Psyllid ID: psy8448

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
Protein Sequence
SISENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHcccEEEEEEEcccHHHHHHHcccccEEEEEEcccccEEEccccccccccccEEEccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccEEEEEEccccccEEEEEcccccEEEEEccccEEEEEcccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccccccccccEEccccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEccccEEEcEEEEEEEEcccEEEEEEcccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccEEEEEcccccEEEEccccEEEEEccccccHHHHcccccccEEEEEEcccccEEEEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEcccccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccHHEEccccccccEEEEEcccccccccccEEEEccccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEccccEEEEEEccccccccccEEEEEEcccccEEEEEccccEEEEc
Coil and Loop (DISEMBL)
sisenllarsyfdpreaypegqskEKRRNAIAHALVgevsvvppSRLLALLGQALKWQqhqgllppgttidlfrgkaamkdqeeekyptqlskqikfgskshvecarfspdgqylitgsVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYsrdsemlasgsqsgkvKIWKIATGQCLRKLEKAHSLGVTciqfsrdnsqilTASFDTYVRIhglksgkmlkefrghssfvnditftadghsvlsassdgtVKMWNLKTTECTStfkslgasdiavnsihllpkntehfVVCNKTNTVVIMNMQGQIVRSlssgkreggdflccttsprgewiycvGEDMVLVVRLIQQYLKESNLMKTLQCLQEEtgvslntvdsvdGFIADINNGHWDTVLKSVqslklpekkLIDLYEQVVLELIELRELGAARSLlrqtdpmifmkqhepeVHEKLVIGLthhphqnllgtysedgllrfs
Flexible Loop (DISEMBL)
sisenllarsyfdpreaypegqskeKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPtqlskqikfgsKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLasgsqsgkvkIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSlssgkreggDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHhphqnllgtysedgllrfs
Low Complexity Region (SEG)
SISENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS
Disordered region (IsUnstruct)
*****************************AIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFR**************************SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY*************GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTY*********
Disordered Region (DISOPRED)
*ISENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS
Disordered Region (DISEMBL)
SISENLLARSYFDPREA*********RRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAA*************SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR*************VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS
Disordered Region (DISPRO)
***ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SISENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	482	2.2.26 [Sep-21-2011]
Q6NRT3	513	WD40 repeat-containing pr	N/A	N/A	0.717	0.674	0.805	1e-176
Q99M63	513	WD40 repeat-containing pr	yes	N/A	0.717	0.674	0.802	1e-176
Q3UKJ7	513	WD40 repeat-containing pr	yes	N/A	0.717	0.674	0.802	1e-175
Q2TAY7	513	WD40 repeat-containing pr	yes	N/A	0.717	0.674	0.802	1e-175
Q76B40	513	WD40 repeat-containing pr	yes	N/A	0.717	0.674	0.802	1e-175
Q2TBS9	513	WD40 repeat-containing pr	yes	N/A	0.717	0.674	0.802	1e-175
Q5ZME8	513	WD40 repeat-containing pr	yes	N/A	0.717	0.674	0.802	1e-175
Q6P4J8	513	WD40 repeat-containing pr	yes	N/A	0.717	0.674	0.799	1e-175
Q7ZVA0	513	WD40 repeat-containing pr	yes	N/A	0.717	0.674	0.796	1e-174
Q54Y96	530	WD40 repeat-containing pr	yes	N/A	0.713	0.649	0.468	4e-86

>sp|Q6NRT3|SMU1_XENLA WD40 repeat-containing protein SMU1 OS=Xenopus laevis GN=smu1 PE=2 SV=1

 Score =  619 bits (1596), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 281/349 (80%), Positives = 319/349 (91%), Gaps = 3/349 (0%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRTAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct: 298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCN 300
           T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG+   +DI VNS+ LLPKN EHFVVCN
Sbjct: 358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CCT SPRGEWIYCVGED VL
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVL 466

Xenopus laevis (taxid: 8355)

>sp|Q99M63|SMU1_RAT WD40 repeat-containing protein SMU1 OS=Rattus norvegicus GN=Smu1 PE=2 SV=1

 Score =  616 bits (1589), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 280/349 (80%), Positives = 318/349 (91%), Gaps = 3/349 (0%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct: 298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCN 300
           T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG+   +DI VNS+ LLPKN EHFVVCN
Sbjct: 358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

Rattus norvegicus (taxid: 10116)

>sp|Q3UKJ7|SMU1_MOUSE WD40 repeat-containing protein SMU1 OS=Mus musculus GN=Smu1 PE=2 SV=2

 Score =  616 bits (1589), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 280/349 (80%), Positives = 318/349 (91%), Gaps = 3/349 (0%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct: 298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCN 300
           T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG+   +DI VNS+ LLPKN EHFVVCN
Sbjct: 358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

Mus musculus (taxid: 10090)

>sp|Q2TAY7|SMU1_HUMAN WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2

 Score =  616 bits (1589), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 280/349 (80%), Positives = 318/349 (91%), Gaps = 3/349 (0%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct: 298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCN 300
           T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG+   +DI VNS+ LLPKN EHFVVCN
Sbjct: 358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

Homo sapiens (taxid: 9606)

>sp|Q76B40|SMU1_CRIGR WD40 repeat-containing protein SMU1 OS=Cricetulus griseus GN=SMU1 PE=2 SV=1

 Score =  616 bits (1589), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 280/349 (80%), Positives = 318/349 (91%), Gaps = 3/349 (0%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct: 298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCN 300
           T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG+   +DI VNS+ LLPKN EHFVVCN
Sbjct: 358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

Cricetulus griseus (taxid: 10029)

>sp|Q2TBS9|SMU1_BOVIN WD40 repeat-containing protein SMU1 OS=Bos taurus GN=SMU1 PE=2 SV=1

 Score =  616 bits (1589), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 280/349 (80%), Positives = 318/349 (91%), Gaps = 3/349 (0%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct: 298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCN 300
           T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG+   +DI VNS+ LLPKN EHFVVCN
Sbjct: 358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

Bos taurus (taxid: 9913)

>sp|Q5ZME8|SMU1_CHICK WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1

 Score =  616 bits (1588), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 280/349 (80%), Positives = 318/349 (91%), Gaps = 3/349 (0%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct: 298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCN 300
           T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG+   +DI VNS+ LLPKN EHFVVCN
Sbjct: 358 TQDGHYIISASSDGTVKVWNVKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

Gallus gallus (taxid: 9031)

>sp|Q6P4J8|SMU1_XENTR WD40 repeat-containing protein SMU1 OS=Xenopus tropicalis GN=smu1 PE=2 SV=1

 Score =  613 bits (1582), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 279/349 (79%), Positives = 317/349 (90%), Gaps = 3/349 (0%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG  IDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMIIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D SQIL+ASFD  +R+HGLKSGK LKEFRGHSSFVN+ TF
Sbjct: 298 CLRRFERAHSKGVTCLSFSKDCSQILSASFDQTIRVHGLKSGKTLKEFRGHSSFVNEATF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCN 300
           T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG+   +DI VNS+ LLPKN EHFVVCN
Sbjct: 358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CCT SPRGEWIYCVGED VL
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVL 466

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZVA0|SMU1_DANRE WD40 repeat-containing protein SMU1 OS=Danio rerio GN=smu1 PE=2 SV=1

 Score =  612 bits (1577), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 278/349 (79%), Positives = 317/349 (90%), Gaps = 3/349 (0%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQ+LKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG TIDLFRGKAA+KD EEE++PTQL++ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMTIDLFRGKAAVKDVEEERFPTQLARHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ +++SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMSFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D++QIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ T 
Sbjct: 298 CLRRYERAHSKGVTCLSFSKDSTQILSASFDQTIRIHGLKSGKCLKEFRGHSSFVNEATL 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS---DIAVNSIHLLPKNTEHFVVCN 300
           T DGH  +SASSDGTVK+WN+KTTECTSTFKSLG S   DI VN++ LLPKN EHFVVCN
Sbjct: 358 TPDGHHAISASSDGTVKVWNMKTTECTSTFKSLGTSAGTDITVNNVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CCT SPRGEWIYCVGED VL
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDYVL 466

Danio rerio (taxid: 7955)

>sp|Q54Y96|SMU1_DICDI WD40 repeat-containing protein smu1 OS=Dictyostelium discoideum GN=smu1 PE=3 SV=2

 Score =  319 bits (817), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 165/352 (46%), Positives = 235/352 (66%), Gaps = 8/352 (2%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           EN L R Y D  + Y  G + EKRR  +   L  E+  VP SRLL+LL Q+L WQ+HQG+
Sbjct: 126 ENHLQREYIDLGDFYKYGITTEKRRKQLIEQLNNEIITVPSSRLLSLLSQSLHWQKHQGI 185

Query: 64  LPPGTT-IDLFRGKAAMK--DQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSV 120
           +P      DLF+G+   K  + EEE+  T L K IKF +K+  E  +FSPD +YL+TGS+
Sbjct: 186 IPDDCMEFDLFKGEVPFKKIESEEEQITTVLDKTIKFNNKNKPETIKFSPDSKYLLTGSM 245

Query: 121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180
           DGFIEVW++ TGK+ K L YQ+ D+FM+ ++A++ +A+S+D E LA+GS   K+K+W+I 
Sbjct: 246 DGFIEVWDYNTGKLSKSLAYQSNDDFMMHDDAILCIAFSKDGEFLATGSLDNKIKVWQIK 305

Query: 181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND 240
           +G+CLRK E AH+ GVTC+QFSR+++QIL+ SFD+ ++IHGLKSGK LK FRGH SFVND
Sbjct: 306 SGKCLRKFEPAHTNGVTCLQFSRNSTQILSGSFDSSLKIHGLKSGKALKIFRGHQSFVND 365

Query: 241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS---LGASDIAVNSIHLLPKNTEHFV 297
             F  D   V+S SSDG +K+W+ K+++C  T      +   DI++ SI +L KN E  +
Sbjct: 366 CCFNHDEDRVISCSSDGKIKIWDAKSSDCLQTITPTSVVTVRDISIRSITILLKNPEFLL 425

Query: 298 VCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           VCN ++ + I++M+ Q + S +        FL CT SP   ++Y V ED +L
Sbjct: 426 VCN-SSQISIVSMKSQTI-SKTFTSENSKTFLVCTLSPLQNYLYAVDEDNIL 475

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
351699731	564	WD40 repeat-containing protein SMU1 [Het	0.908	0.776	0.662	0.0
48139204	510	PREDICTED: WD40 repeat-containing protei	0.703	0.664	0.817	1e-176
340726098	510	PREDICTED: WD40 repeat-containing protei	0.703	0.664	0.817	1e-176
383851711	510	PREDICTED: WD40 repeat-containing protei	0.703	0.664	0.815	1e-176
242011854	408	WD-repeat protein, putative [Pediculus h	0.703	0.830	0.823	1e-176
156542064	510	PREDICTED: WD40 repeat-containing protei	0.701	0.662	0.806	1e-175
307201743	510	WD40 repeat-containing protein SMU1 [Har	0.703	0.664	0.812	1e-175
307175816	510	WD40 repeat-containing protein SMU1 [Cam	0.703	0.664	0.812	1e-175
322786616	510	hypothetical protein SINV_13164 [Solenop	0.695	0.656	0.812	1e-175
148234016	513	WD40 repeat-containing protein SMU1 [Xen	0.717	0.674	0.805	1e-174

>gi|351699731|gb|EHB02650.1| WD40 repeat-containing protein SMU1 [Heterocephalus glaber]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/480 (66%), Positives = 364/480 (75%), Gaps = 42/480 (8%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct: 298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCN 300
           T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG+   +DI VNS+ LLPKN EHFVVCN
Sbjct: 358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKE 360
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL           
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLY---------- 467

Query: 361 SNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLY-EQ 419
                   C    TG    T+  V  F +    G  D V  ++     P  + I    E 
Sbjct: 468 --------CFSTVTGKLERTLTIVRSFSSGKREGG-DFVCCALS----PRGEWIYCVGED 514

Query: 420 VVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLL 479
            VL           R+L                VHEK VIG+ HHPHQNL+ TYSEDGLL
Sbjct: 515 FVLYCFSTVTGKLERTL---------------TVHEKDVIGIAHHPHQNLIATYSEDGLL 559

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|48139204|ref|XP_393446.1| PREDICTED: WD40 repeat-containing protein SMU1-like isoform 1 [Apis mellifera] gi|380024792|ref|XP_003696175.1| PREDICTED: WD40 repeat-containing protein SMU1-like [Apis florea]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 283/346 (81%), Positives = 320/346 (92%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G +KEKRR  IA AL GEVSVVP SRLLALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSTKEKRRAYIATALAGEVSVVPSSRLLALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPGTTIDLFRGKAA++DQE+EKYPTQLSKQIKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGTTIDLFRGKAAVRDQEDEKYPTQLSKQIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+ME+AV+S+A+SRDSEMLA G Q GK+K+W++ +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMEQAVLSMAFSRDSEMLAGGGQDGKIKVWRVQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ EKAHS GVTC+QFSRDNSQIL+ASFDT +RIHGLKSGK LKEFRGH+SFVN++ F
Sbjct: 298 CLRRFEKAHSKGVTCLQFSRDNSQILSASFDTTIRIHGLKSGKTLKEFRGHASFVNEVVF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
             DGH+++SASSDGTVK+W+LKTTEC  T+KSLGA+D+ VNSIHLLP+N EHFVVCN++N
Sbjct: 358 APDGHNLISASSDGTVKVWSLKTTECIGTYKSLGAADLTVNSIHLLPRNPEHFVVCNRSN 417

Query: 304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           TVVIMNMQGQIVRS SSGKREGGDF+C   SPRGE+IYCVGED+VL
Sbjct: 418 TVVIMNMQGQIVRSFSSGKREGGDFVCTVVSPRGEFIYCVGEDLVL 463

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726098|ref|XP_003401399.1| PREDICTED: WD40 repeat-containing protein SMU1-like [Bombus terrestris] gi|350425929|ref|XP_003494276.1| PREDICTED: WD40 repeat-containing protein SMU1-like [Bombus impatiens]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 283/346 (81%), Positives = 320/346 (92%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G +KEKRR  IA AL GEVSVVP SRLLALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSTKEKRRAYIATALAGEVSVVPSSRLLALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPGTTIDLFRGKAA++DQE+EKYPTQLSKQIKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGTTIDLFRGKAAVRDQEDEKYPTQLSKQIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+ME+AV+S+A+SRDSEMLA G Q GK+K+W++ +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMEQAVLSMAFSRDSEMLAGGGQDGKIKVWRVQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ EKAHS GVTC+QFSRDNSQIL+ASFDT +RIHGLKSGK LKEFRGH+SFVN++ F
Sbjct: 298 CLRRFEKAHSKGVTCLQFSRDNSQILSASFDTTIRIHGLKSGKTLKEFRGHASFVNEVVF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
             DGH+V+SASSDGTVK+W+LKTTEC  T+KSLGA+D+ VNSIH+LP+N EHFVVCN++N
Sbjct: 358 APDGHNVISASSDGTVKVWSLKTTECIGTYKSLGAADLTVNSIHVLPRNPEHFVVCNRSN 417

Query: 304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           TVVIMNMQGQIVRS SSGKREGGDF+C   SPRGE+IYCVGED+VL
Sbjct: 418 TVVIMNMQGQIVRSFSSGKREGGDFVCTVVSPRGEFIYCVGEDLVL 463

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851711|ref|XP_003701375.1| PREDICTED: WD40 repeat-containing protein SMU1-like [Megachile rotundata]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 282/346 (81%), Positives = 321/346 (92%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G +KEKRR  IA AL GEVSVVP SRLLALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSTKEKRRAYIATALAGEVSVVPSSRLLALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPGTTIDLFRGKAA++DQE+EKYPTQLSKQIKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGTTIDLFRGKAAVRDQEDEKYPTQLSKQIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+ME+AV+S+++SRDSEMLA G Q GK+K+W++ +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMEQAVLSMSFSRDSEMLAGGGQDGKIKVWRVQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ EKAHS GVTC+QFSRDNSQIL+ASFDT +RIHGLKSGK LKEFRGH+SFVN++ F
Sbjct: 298 CLRRFEKAHSKGVTCLQFSRDNSQILSASFDTTIRIHGLKSGKTLKEFRGHASFVNEVVF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
           + DGH+++SASSDGTVK+W+LKTTEC  T+KSLGA+D+ VNSIHLLP+N EHFVVCN++N
Sbjct: 358 SPDGHNIISASSDGTVKVWSLKTTECIGTYKSLGAADLTVNSIHLLPRNPEHFVVCNRSN 417

Query: 304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           TVVIMNMQGQIVRS SSGKREGGDF+C   SPRGE+IYCVGED+VL
Sbjct: 418 TVVIMNMQGQIVRSFSSGKREGGDFVCTVVSPRGEFIYCVGEDLVL 463

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011854|ref|XP_002426659.1| WD-repeat protein, putative [Pediculus humanus corporis] gi|212510823|gb|EEB13921.1| WD-repeat protein, putative [Pediculus humanus corporis]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 285/346 (82%), Positives = 320/346 (92%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVP SRLLALLGQALKWQQHQGL
Sbjct: 16  ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPSSRLLALLGQALKWQQHQGL 75

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPGTTIDLFRGKAAM+DQE+EK+PTQLSKQIKFG KSHVECA+FSPDGQYLITGS DGF
Sbjct: 76  LPPGTTIDLFRGKAAMRDQEDEKFPTQLSKQIKFGQKSHVECAKFSPDGQYLITGSFDGF 135

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+MEEAV+ +++SRDSEMLA+GSQ GK+K+W+I TGQ
Sbjct: 136 IEVWNFTTGKIRKDLKYQAQDNFMMMEEAVLCMSFSRDSEMLATGSQEGKIKVWRIQTGQ 195

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLRK EKAH+ G+TC+QFSRDNSQIL+ASFDT +RIHGLKSGK LKEFRGH+SFVN++ F
Sbjct: 196 CLRKFEKAHTKGITCLQFSRDNSQILSASFDTTIRIHGLKSGKTLKEFRGHASFVNEVVF 255

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
           T DGH +LSASSDGTVK W++K+TECT+TFKSLG+ DI VN+I  LPKN EHFVVC+++N
Sbjct: 256 TPDGHYLLSASSDGTVKYWSIKSTECTNTFKSLGSGDITVNTIIPLPKNPEHFVVCSRSN 315

Query: 304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           TVVIMNMQGQIVRS SSGKREGGDF+C T SPRG+WIYCVGED+VL
Sbjct: 316 TVVIMNMQGQIVRSFSSGKREGGDFVCATISPRGDWIYCVGEDLVL 361

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542064|ref|XP_001601359.1| PREDICTED: WD40 repeat-containing protein SMU1-like [Nasonia vitripennis]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 279/346 (80%), Positives = 321/346 (92%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G +KEKRR  IA +L GEVSVVP SRLLALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSTKEKRRAYIATSLSGEVSVVPSSRLLALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPGTTIDLFRGKAA++DQE+EKYPTQLSKQIKFG+KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGTTIDLFRGKAAVRDQEDEKYPTQLSKQIKFGTKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+ME+AV+S+A+SRDSEMLA G+Q GK+KIWK+ +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMEQAVLSMAFSRDSEMLAGGAQDGKIKIWKVQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ EKAHS GVTC+QFSRDNSQ+L+ASFD  +RIHGLKSGK LKEFRGH+S+VN++ F
Sbjct: 298 CLRRFEKAHSKGVTCLQFSRDNSQVLSASFDATIRIHGLKSGKTLKEFRGHTSYVNEVIF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
           ++D HS++SASSDGTVK+W+LK+TECT T+KSLGA+D+ VNS+H LPKN EHFVVCN++N
Sbjct: 358 SSDAHSIISASSDGTVKVWSLKSTECTGTYKSLGAADLTVNSVHSLPKNPEHFVVCNRSN 417

Query: 304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           TVVIMNMQGQIVRS SSGKREGGDF+C   SP+GE+IYCVGED VL
Sbjct: 418 TVVIMNMQGQIVRSFSSGKREGGDFVCAVVSPKGEYIYCVGEDFVL 463

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201743|gb|EFN81422.1| WD40 repeat-containing protein SMU1 [Harpegnathos saltator]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 281/346 (81%), Positives = 319/346 (92%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G +KEKRR  IA AL GEVSVVP SRLLALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSTKEKRRAYIATALAGEVSVVPSSRLLALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPGTTIDLFRGKAA++DQE+EKYPTQLSKQIKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGTTIDLFRGKAAVRDQEDEKYPTQLSKQIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+ME+AV+S+++SRDSEMLA G Q GK+K+W++ +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMEQAVLSMSFSRDSEMLAGGGQDGKIKVWRVQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ EKAHS GVTC+QFSRDNSQIL+ASFDT +RIHGLKSGK LKEFRGH SFVN++ F
Sbjct: 298 CLRRFEKAHSKGVTCLQFSRDNSQILSASFDTTIRIHGLKSGKTLKEFRGHGSFVNEVVF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
           + DGH+++SASSDGTVK+W+LKTTEC  T+KSLGA+D+ VNSIH LP+N EHFVVCN++N
Sbjct: 358 SPDGHNLISASSDGTVKIWSLKTTECIGTYKSLGAADLTVNSIHSLPRNPEHFVVCNRSN 417

Query: 304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           TVVIMNMQGQIVRS SSGKREGGDF+C   SPRGE+IYCVGED+VL
Sbjct: 418 TVVIMNMQGQIVRSFSSGKREGGDFVCTVVSPRGEFIYCVGEDLVL 463

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175816|gb|EFN65631.1| WD40 repeat-containing protein SMU1 [Camponotus floridanus]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 281/346 (81%), Positives = 318/346 (91%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G +KEKRR  IA AL GEVSVVP SRLLALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSTKEKRRAYIATALAGEVSVVPSSRLLALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPGTTIDLFRGKAA++DQE+EKYPTQLSKQIKFG KSHVECARFSPDGQ+L+TGSVDGF
Sbjct: 178 LPPGTTIDLFRGKAAVRDQEDEKYPTQLSKQIKFGQKSHVECARFSPDGQFLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+ME+AV+S+++SRDSEMLA G Q GK+K+WK+  GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMEQAVLSMSFSRDSEMLAGGGQDGKIKVWKVQNGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           C R+ EKAHS GVTC+QFSRDNSQIL+ASFDT VRIHGLKSGK LKEFRGH+SFVN++ F
Sbjct: 298 CARRFEKAHSKGVTCLQFSRDNSQILSASFDTTVRIHGLKSGKTLKEFRGHTSFVNEVVF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
           + DGH+++SASSDGTVK+W+LKTTEC  T+KSLGA+D+ VNSIH LP+N EHFVVCN++N
Sbjct: 358 SPDGHNIISASSDGTVKIWSLKTTECIGTYKSLGAADLTVNSIHPLPRNPEHFVVCNRSN 417

Query: 304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           TVVIMNMQGQIVRS SSGKREGGDF+C   SPRGE+IYCVGED+VL
Sbjct: 418 TVVIMNMQGQIVRSFSSGKREGGDFVCTVVSPRGEFIYCVGEDLVL 463

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786616|gb|EFZ13011.1| hypothetical protein SINV_13164 [Solenopsis invicta]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 281/346 (81%), Positives = 318/346 (91%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G +KEKRR  IA AL GEVSVVP SRLLALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSTKEKRRAYIATALAGEVSVVPSSRLLALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPGTTIDLFRGKAA++DQE+EKYPTQLSKQIKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGTTIDLFRGKAAVRDQEDEKYPTQLSKQIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+ME+AV+S+A+SRDSEMLA G Q GK+K+W++ +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMEQAVLSMAFSRDSEMLAGGGQDGKIKVWRVQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ EKAHS GVTC+QFSRDNSQIL+ SFDT +RIHGLKSGK LKEFRGHSSFVN++ F
Sbjct: 298 CLRRFEKAHSKGVTCLQFSRDNSQILSTSFDTTIRIHGLKSGKTLKEFRGHSSFVNEVIF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
           + DGH+++SASSDGTVK+W+LKTTEC  T+KSLGA+D+ VNSIH LP+N EHFVVCN++N
Sbjct: 358 SPDGHNIISASSDGTVKIWSLKTTECIGTYKSLGAADLTVNSIHALPRNPEHFVVCNRSN 417

Query: 304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           TVVIMNMQGQIVRS SSGKREGGDF+    SPRGE+IYCVGED+VL
Sbjct: 418 TVVIMNMQGQIVRSFSSGKREGGDFVTTVVSPRGEFIYCVGEDLVL 463

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148234016|ref|NP_001084865.1| WD40 repeat-containing protein SMU1 [Xenopus laevis] gi|82237138|sp|Q6NRT3.1|SMU1_XENLA RecName: Full=WD40 repeat-containing protein SMU1; AltName: Full=Smu-1 suppressor of mec-8 and unc-52 protein homolog gi|47123903|gb|AAH70636.1| MGC81475 protein [Xenopus laevis]

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 281/349 (80%), Positives = 319/349 (91%), Gaps = 3/349 (0%)

Query: 4   ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
           ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct: 118 ENLLARSYFDPREAYPDGSSKEKRRTAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query: 64  LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
           LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct: 178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
           CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct: 298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query: 244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCN 300
           T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG+   +DI VNS+ LLPKN EHFVVCN
Sbjct: 358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query: 301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           ++NTVVIMNMQGQIVRS SSGKREGGDF+CCT SPRGEWIYCVGED VL
Sbjct: 418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVL 466

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
UNIPROTKB|Q2TBS9	513	SMU1 "WD40 repeat-containing p	0.717	0.674	0.802	4.4e-167
UNIPROTKB|Q2TAY7	513	SMU1 "WD40 repeat-containing p	0.717	0.674	0.802	4.4e-167
MGI|MGI:1915546	513	Smu1 "smu-1 suppressor of mec-	0.717	0.674	0.802	4.4e-167
RGD|620694	513	Smu1 "smu-1 suppressor of mec-	0.717	0.674	0.802	4.4e-167
UNIPROTKB|Q5ZME8	513	SMU1 "WD40 repeat-containing p	0.717	0.674	0.802	5.6e-167
ZFIN|ZDB-GENE-040426-916	513	smu1 "smu-1 suppressor of mec-	0.717	0.674	0.796	1.2e-166
FB|FBgn0038666	509	Smu1 "SMU1 ortholog" [Drosophi	0.715	0.677	0.783	1.1e-161
TAIR|locus:2027749	511	SMU1 "AT1G73720" [Arabidopsis	0.713	0.673	0.624	3.3e-130
WB|WBGene00004895	510	smu-1 [Caenorhabditis elegans	0.748	0.707	0.535	4.7e-118
DICTYBASE|DDB_G0278353	530	smu1 "suppressor of mec-8 and	0.713	0.649	0.468	4.4e-90

UNIPROTKB|Q2TBS9 SMU1 "WD40 repeat-containing protein SMU1" [Bos taurus (taxid:9913)]

 Score = 1522 (540.8 bits), Expect = 4.4e-167, Sum P(2) = 4.4e-167
 Identities = 280/349 (80%), Positives = 318/349 (91%)

Query:     4 ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
             ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct:   118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query:    64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
             LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct:   178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query:   124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
             IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct:   238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query:   184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
             CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct:   298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query:   244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS---DIAVNSIHLLPKNTEHFVVCN 300
             T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG++   DI VNS+ LLPKN EHFVVCN
Sbjct:   358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query:   301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
             ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct:   418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q2TAY7 SMU1 "WD40 repeat-containing protein SMU1" [Homo sapiens (taxid:9606)]

 Score = 1522 (540.8 bits), Expect = 4.4e-167, Sum P(2) = 4.4e-167
 Identities = 280/349 (80%), Positives = 318/349 (91%)

Query:     4 ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
             ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct:   118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query:    64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
             LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct:   178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query:   124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
             IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct:   238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query:   184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
             CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct:   298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query:   244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS---DIAVNSIHLLPKNTEHFVVCN 300
             T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG++   DI VNS+ LLPKN EHFVVCN
Sbjct:   358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query:   301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
             ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct:   418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1915546 Smu1 "smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 1522 (540.8 bits), Expect = 4.4e-167, Sum P(2) = 4.4e-167
 Identities = 280/349 (80%), Positives = 318/349 (91%)

Query:     4 ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
             ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct:   118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query:    64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
             LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct:   178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query:   124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
             IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct:   238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query:   184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
             CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct:   298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query:   244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS---DIAVNSIHLLPKNTEHFVVCN 300
             T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG++   DI VNS+ LLPKN EHFVVCN
Sbjct:   358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query:   301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
             ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct:   418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|620694 Smu1 "smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 1522 (540.8 bits), Expect = 4.4e-167, Sum P(2) = 4.4e-167
 Identities = 280/349 (80%), Positives = 318/349 (91%)

Query:     4 ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
             ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct:   118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query:    64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
             LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct:   178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query:   124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
             IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct:   238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query:   184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
             CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct:   298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query:   244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS---DIAVNSIHLLPKNTEHFVVCN 300
             T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG++   DI VNS+ LLPKN EHFVVCN
Sbjct:   358 TQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query:   301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
             ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct:   418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZME8 SMU1 "WD40 repeat-containing protein SMU1" [Gallus gallus (taxid:9031)]

 Score = 1521 (540.5 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
 Identities = 280/349 (80%), Positives = 318/349 (91%)

Query:     4 ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
             ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQALKWQQHQGL
Sbjct:   118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGL 177

Query:    64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
             LPPG TIDLFRGKAA+KD EEEK+PTQLS+ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct:   178 LPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query:   124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
             IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ + +SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct:   238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query:   184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
             CLR+ E+AHS GVTC+ FS+D+SQIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ TF
Sbjct:   298 CLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATF 357

Query:   244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS---DIAVNSIHLLPKNTEHFVVCN 300
             T DGH ++SASSDGTVK+WN+KTTEC++TFKSLG++   DI VNS+ LLPKN EHFVVCN
Sbjct:   358 TQDGHYIISASSDGTVKVWNVKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCN 417

Query:   301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
             ++NTVVIMNMQGQIVRS SSGKREGGDF+CC  SPRGEWIYCVGED VL
Sbjct:   418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVL 466

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-916 smu1 "smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 1512 (537.3 bits), Expect = 1.2e-166, Sum P(2) = 1.2e-166
 Identities = 278/349 (79%), Positives = 317/349 (90%)

Query:     4 ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
             ENLLARSYFDPREAYP+G SKEKRR AIA AL GEVSVVPPSRL+ALLGQ+LKWQQHQGL
Sbjct:   118 ENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGL 177

Query:    64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
             LPPG TIDLFRGKAA+KD EEE++PTQL++ IKFG KSHVECARFSPDGQYL+TGSVDGF
Sbjct:   178 LPPGMTIDLFRGKAAVKDVEEERFPTQLARHIKFGQKSHVECARFSPDGQYLVTGSVDGF 237

Query:   124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
             IEVWNFTTGKIRKDLKYQAQDNFM+M++AV+ +++SRD+EMLA+G+Q GK+K+WKI +GQ
Sbjct:   238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMSFSRDTEMLATGAQDGKIKVWKIQSGQ 297

Query:   184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
             CLR+ E+AHS GVTC+ FS+D++QIL+ASFD  +RIHGLKSGK LKEFRGHSSFVN+ T 
Sbjct:   298 CLRRYERAHSKGVTCLSFSKDSTQILSASFDQTIRIHGLKSGKCLKEFRGHSSFVNEATL 357

Query:   244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS---DIAVNSIHLLPKNTEHFVVCN 300
             T DGH  +SASSDGTVK+WN+KTTECTSTFKSLG S   DI VN++ LLPKN EHFVVCN
Sbjct:   358 TPDGHHAISASSDGTVKVWNMKTTECTSTFKSLGTSAGTDITVNNVILLPKNPEHFVVCN 417

Query:   301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
             ++NTVVIMNMQGQIVRS SSGKREGGDF+CCT SPRGEWIYCVGED VL
Sbjct:   418 RSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDYVL 466

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0038666 Smu1 "SMU1 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 1466 (521.1 bits), Expect = 1.1e-161, Sum P(2) = 1.1e-161
 Identities = 271/346 (78%), Positives = 311/346 (89%)

Query:     4 ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
             EN+L R+YFDPREAY EG SKEKRR  IA  L GEV VVP SRLLALLGQALKWQQHQGL
Sbjct:   118 ENMLQRAYFDPREAYAEGSSKEKRRTVIAQELSGEVHVVPSSRLLALLGQALKWQQHQGL 177

Query:    64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
             LPPGTTIDLFRGKAAMKDQEEE YPTQL +QIKFG KSHVECA+FSPDGQYLITGSVDGF
Sbjct:   178 LPPGTTIDLFRGKAAMKDQEEEMYPTQLFRQIKFGQKSHVECAQFSPDGQYLITGSVDGF 237

Query:   124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
             +EVWNFTTGK+RKDLKYQAQD FM+ME+AV++L +SRDSEM+ASG+Q G++K+W+I TGQ
Sbjct:   238 LEVWNFTTGKVRKDLKYQAQDQFMMMEQAVLALNFSRDSEMVASGAQDGQIKVWRIITGQ 297

Query:   184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
             CLRK EKAH+ G+TC+QFSRDNSQ+L+ASFD  VR+HGLKSGKMLKEF+GHSSFVN+ TF
Sbjct:   298 CLRKFEKAHTKGITCLQFSRDNSQVLSASFDYTVRLHGLKSGKMLKEFKGHSSFVNEATF 357

Query:   244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN 303
             T DGHSVLSASSDGTVK+W+LKTTEC +T+K LG +++AVN++ +LPKN EHF+VCN++N
Sbjct:   358 TPDGHSVLSASSDGTVKVWSLKTTECVATYKPLG-NELAVNTVLILPKNPEHFIVCNRSN 416

Query:   304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
             TVVIMNMQGQIVRS SSGKREGG F+  T SPRGE+IYC GED VL
Sbjct:   417 TVVIMNMQGQIVRSFSSGKREGGAFISATLSPRGEFIYCAGEDQVL 462

GO:0003674 "molecular_function" evidence=ND

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0072553 "terminal button organization" evidence=IMP

TAIR|locus:2027749 SMU1 "AT1G73720" [Arabidopsis thaliana (taxid:3702)]

 Score = 1183 (421.5 bits), Expect = 3.3e-130, Sum P(2) = 3.3e-130
 Identities = 218/349 (62%), Positives = 276/349 (79%)

Query:     4 ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
             E+LL RSYFDP EAY +  +KE++R  IA A+  EV+VVPPSRL+AL+GQALKWQQHQGL
Sbjct:   118 EHLLVRSYFDPHEAYGDS-TKERKRAQIAQAVAAEVTVVPPSRLMALIGQALKWQQHQGL 176

Query:    64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
             LPPGT  DLFRG AAMK   E+ +P  L+  IKFG KSH ECARFSPDGQ+L + SVDGF
Sbjct:   177 LPPGTQFDLFRGTAAMKQDVEDTHPNVLTHTIKFGKKSHAECARFSPDGQFLASSSVDGF 236

Query:   124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
             IEVW++ +GK++KDL+YQA ++FM+ ++ V+ + +SRDSEMLASGSQ GK+KIW+I TG 
Sbjct:   237 IEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGV 296

Query:   184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
             C+R+ + AHS GVT + FSRD SQ+L+ SFD   RIHGLKSGK+LKEFRGH+S+VN   F
Sbjct:   297 CIRRFD-AHSQGVTSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLKEFRGHTSYVNHAIF 355

Query:   244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKS---LGASDIAVNSIHLLPKNTEHFVVCN 300
             T+DG  +++ASSD TVK+W+ KTT+C  TFK    L  +D +VNSIHL PKNTEH VVCN
Sbjct:   356 TSDGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGTDASVNSIHLFPKNTEHIVVCN 415

Query:   301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
             KT+++ IM +QGQ+V+S SSG REGGDF+    S +G+WIYC+GED  L
Sbjct:   416 KTSSIYIMTLQGQVVKSFSSGNREGGDFVAACVSTKGDWIYCIGEDKKL 464

GO:0000166 "nucleotide binding" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0008380 "RNA splicing" evidence=IMP

WB|WBGene00004895 smu-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 1074 (383.1 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
 Identities = 195/364 (53%), Positives = 274/364 (75%)

Query:     4 ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
             E+L+ R YFD +E Y +  SKEKRR+ IA  L  EV VV PSRLL+LLGQ+LKWQ HQGL
Sbjct:   119 ESLINRPYFDGQEVYGD-VSKEKRRSVIAQTLSSEVHVVAPSRLLSLLGQSLKWQLHQGL 177

Query:    64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGF 123
             LPPGT IDLFRGKAA K+Q EE+YPT +++ IKF +KS+ E A FSPD  YL++GS DGF
Sbjct:   178 LPPGTAIDLFRGKAAQKEQIEERYPTMMARSIKFSTKSYPESAVFSPDANYLVSGSKDGF 237

Query:   124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
             IEVWN+  GK+RKDLKYQAQDN M+M+ AV  +++SRDSEMLA+GS  GK+K+WK+ TG 
Sbjct:   238 IEVWNYMNGKLRKDLKYQAQDNLMMMDAAVRCISFSRDSEMLATGSIDGKIKVWKVETGD 297

Query:   184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF 243
             CLR+ ++AH+ GV  ++FS+DNS IL+   D  VR+HG+KSGK LKE RGHSS++ D+ +
Sbjct:   298 CLRRFDRAHTKGVCAVRFSKDNSHILSGGNDHVVRVHGMKSGKCLKEMRGHSSYITDVRY 357

Query:   244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTE-HFVVCNKT 302
             + +G+ ++S S+DG++++W+ K+ EC STF+ +G+ D  + ++  +PK+     +VCN++
Sbjct:   358 SDEGNHIISCSTDGSIRVWHGKSGECLSTFR-VGSEDYPILNVIPIPKSDPPQMIVCNRS 416

Query:   303 NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESN 362
             NT+ ++N+ GQ+VR+++SGKRE GDF+ C  SP+GEW Y + ED V+   ++     E+ 
Sbjct:   417 NTLYVVNISGQVVRTMTSGKREKGDFINCILSPKGEWAYAIAEDGVMYCFMVLSGTLETT 476

Query:   363 LMKT 366
             L  T
Sbjct:   477 LPVT 480

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI;IMP

GO:0007638 "mechanosensory behavior" evidence=IGI

GO:0048666 "neuron development" evidence=IGI

GO:0002119 "nematode larval development" evidence=IGI

GO:0040011 "locomotion" evidence=IGI

GO:0048644 "muscle organ morphogenesis" evidence=IGI

DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 843 (301.8 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
 Identities = 165/352 (46%), Positives = 233/352 (66%)

Query:     4 ENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGL 63
             EN L R Y D  + Y  G + EKRR  +   L  E+  VP SRLL+LL Q+L WQ+HQG+
Sbjct:   126 ENHLQREYIDLGDFYKYGITTEKRRKQLIEQLNNEIITVPSSRLLSLLSQSLHWQKHQGI 185

Query:    64 LPPGTT-IDLFRGKAAMK--DQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSV 120
             +P      DLF+G+   K  + EEE+  T L K IKF +K+  E  +FSPD +YL+TGS+
Sbjct:   186 IPDDCMEFDLFKGEVPFKKIESEEEQITTVLDKTIKFNNKNKPETIKFSPDSKYLLTGSM 245

Query:   121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA 180
             DGFIEVW++ TGK+ K L YQ+ D+FM+ ++A++ +A+S+D E LA+GS   K+K+W+I 
Sbjct:   246 DGFIEVWDYNTGKLSKSLAYQSNDDFMMHDDAILCIAFSKDGEFLATGSLDNKIKVWQIK 305

Query:   181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND 240
             +G+CLRK E AH+ GVTC+QFSR+++QIL+ SFD+ ++IHGLKSGK LK FRGH SFVND
Sbjct:   306 SGKCLRKFEPAHTNGVTCLQFSRNSTQILSGSFDSSLKIHGLKSGKALKIFRGHQSFVND 365

Query:   241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFV 297
               F  D   V+S SSDG +K+W+ K+++C  T          DI++ SI +L KN E  +
Sbjct:   366 CCFNHDEDRVISCSSDGKIKIWDAKSSDCLQTITPTSVVTVRDISIRSITILLKNPEFLL 425

Query:   298 VCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
             VCN +  + I++M+ Q + S +        FL CT SP   ++Y V ED +L
Sbjct:   426 VCNSSQ-ISIVSMKSQTI-SKTFTSENSKTFLVCTLSPLQNYLYAVDEDNIL 475

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NRT3	SMU1_XENLA	No assigned EC number	0.8051	0.7178	0.6744	N/A	N/A
Q5ZME8	SMU1_CHICK	No assigned EC number	0.8022	0.7178	0.6744	yes	N/A
Q6P4J8	SMU1_XENTR	No assigned EC number	0.7994	0.7178	0.6744	yes	N/A
Q99M63	SMU1_RAT	No assigned EC number	0.8022	0.7178	0.6744	yes	N/A
Q7ZVA0	SMU1_DANRE	No assigned EC number	0.7965	0.7178	0.6744	yes	N/A
Q2TAY7	SMU1_HUMAN	No assigned EC number	0.8022	0.7178	0.6744	yes	N/A
Q54Y96	SMU1_DICDI	No assigned EC number	0.4687	0.7136	0.6490	yes	N/A
Q76B40	SMU1_CRIGR	No assigned EC number	0.8022	0.7178	0.6744	yes	N/A
Q2TBS9	SMU1_BOVIN	No assigned EC number	0.8022	0.7178	0.6744	yes	N/A
Q3UKJ7	SMU1_MOUSE	No assigned EC number	0.8022	0.7178	0.6744	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	482
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-43
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-42
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-40
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-35
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-33
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-20
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-10
smart00320	40	smart00320, WD40, WD40 repeats	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-08
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	4e-05
smart00320	40	smart00320, WD40, WD40 repeats	5e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	6e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  154 bits (390), Expect = 3e-43
 Identities = 83/257 (32%), Positives = 132/257 (51%), Gaps = 18/257 (7%)

Query: 91  LSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME 150
           L + +K G    V C  FSPDG+ L TGS DG I+VW+  TG++ + LK           
Sbjct: 1   LRRTLK-GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------GHT 51

Query: 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT 210
             V  +A S D   LASGS    +++W + TG+C+R L   H+  V+ + FS D   + +
Sbjct: 52  GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSS 110

Query: 211 ASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECT 270
           +S D  +++  +++GK L   RGH+ +VN + F+ DG  V S+S DGT+K+W+L+T +C 
Sbjct: 111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170

Query: 271 STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFL 329
           +T          VNS+   P   E  +  +   T+ + ++  G+ + +L  G   G    
Sbjct: 171 ATLT---GHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCLGTL-RGHENG--VN 223

Query: 330 CCTTSPRGEWIYCVGED 346
               SP G  +    ED
Sbjct: 224 SVAFSPDGYLLASGSED 240

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  150 bits (382), Expect = 4e-42
 Identities = 72/245 (29%), Positives = 124/245 (50%), Gaps = 17/245 (6%)

Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
           V     S DG YL +GS D  I +W+  TG+  + L              V S+A+S D 
Sbjct: 54  VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT--------GHTSYVSSVAFSPDG 105

Query: 163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL 222
            +L+S S+   +K+W + TG+CL  L + H+  V  + FS D + + ++S D  +++  L
Sbjct: 106 RILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
           ++GK +    GH+  VN + F+ DG  +LS+SSDGT+K+W+L T +C  T +     +  
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG---HENG 221

Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIY 341
           VNS+   P +       ++  T+ + +++ G+ V++LS              SP G+ + 
Sbjct: 222 VNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHT---NSVTSLAWSPDGKRLA 277

Query: 342 CVGED 346
               D
Sbjct: 278 SGSAD 282

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  146 bits (371), Expect = 2e-40
 Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 12/196 (6%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G  S+V    FSPDG+ L + S D  I+VW+  TGK    L+           + V S+A
Sbjct: 91  GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH--------TDWVNSVA 142

Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
           +S D   +AS SQ G +K+W + TG+C+  L   H+  V  + FS D  ++L++S D  +
Sbjct: 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTI 201

Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
           ++  L +GK L   RGH + VN + F+ DG+ + S S DGT+++W+L+T EC  T     
Sbjct: 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--- 258

Query: 278 ASDIAVNSIHLLPKNT 293
               +V S+   P   
Sbjct: 259 GHTNSVTSLAWSPDGK 274

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  133 bits (336), Expect = 1e-35
 Identities = 61/199 (30%), Positives = 111/199 (55%), Gaps = 11/199 (5%)

Query: 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS 212
           V  +A+S D ++LA+GS  G +K+W + TG+ LR L K H+  V  +  S D + + + S
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASADGTYLASGS 70

Query: 213 FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTST 272
            D  +R+  L++G+ ++   GH+S+V+ + F+ DG  + S+S D T+K+W+++T +C +T
Sbjct: 71  SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT 130

Query: 273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKTN-TVVIMNM-QGQIVRSLSSGKREGGDFLC 330
            +  G +D  VNS+   P  T  FV  +  + T+ + ++  G+ V +L+      G+   
Sbjct: 131 LR--GHTD-WVNSVAFSPDGT--FVASSSQDGTIKLWDLRTGKCVATLTGHT---GEVNS 182

Query: 331 CTTSPRGEWIYCVGEDMVL 349
              SP GE +     D  +
Sbjct: 183 VAFSPDGEKLLSSSSDGTI 201

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  127 bits (322), Expect = 2e-33
 Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 9/161 (5%)

Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
           V    FSPDG ++ + S DG I++W+  TGK                   V S+A+S D 
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA--------TLTGHTGEVNSVAFSPDG 189

Query: 163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL 222
           E L S S  G +K+W ++TG+CL  L   H  GV  + FS D   + + S D  +R+  L
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248

Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
           ++G+ ++   GH++ V  + ++ DG  + S S+DGT+++W+
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  111 bits (277), Expect = 2e-26
 Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 19/275 (6%)

Query: 98  GSKSHVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSL 156
           G    V    FSPDG  LI +GS DG I +W+ +TGK+ +       D+ +         
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-------- 247

Query: 157 AYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTY 216
           ++S D  +LASGS  G +++W + +   L +    HS  V  + FS D   + + S D  
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307

Query: 217 VRIHGLKSGK--MLKEFRGHSSFVNDITFTADGHSVLSA-SSDGTVKMWNLKTTECTSTF 273
           VR+  L++GK       +GH   V+ ++F+ DG  ++S  S DGT+++W+L+T +   T 
Sbjct: 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367

Query: 274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTT 333
           +        V S+   P +       +   TV + ++    +     G            
Sbjct: 368 EGHS----NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDF 420

Query: 334 SPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQ 368
           SP G+ +     D  + +  ++  LK  +     +
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGK 455

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  101 bits (251), Expect = 4e-23
 Identities = 85/344 (24%), Positives = 150/344 (43%), Gaps = 34/344 (9%)

Query: 84  EEKYPTQLSKQIKFGSKSHVECARF-SPDGQYLIT--GSVDGFIEVWNFTTGKIRKDLKY 140
           +     +L K ++    S V      SPDG  ++    S+DG +++W+ +T         
Sbjct: 93  DLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL----- 147

Query: 141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-GKVKIWKIATGQCLRKLEKAHSLGVTCI 199
                     E+V SLA+S D ++LASGS   G +K+W + TG+ L  L   H+  V+ +
Sbjct: 148 --IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSL 204

Query: 200 QFSRDNS-QILTASFDTYVRIHGLKSGKMLK-EFRGHSSFVNDITFTADGHSVLSASSDG 257
            FS D    I + S D  +R+  L +GK+L+    GHS      +F+ DG  + S SSDG
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SVVSSFSPDGSLLASGSSDG 263

Query: 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRS 317
           T+++W+L+++   S  ++L     +V S+   P + +     +   TV + +++   + S
Sbjct: 264 TIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLS 320

Query: 318 LSSGKREGGDFLCCTTSPRGEWIY-CVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGV 376
             + K   G     + SP G  +     +D  + +      L+    +KTL+       V
Sbjct: 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL----WDLRTGKPLKTLEGHSNVLSV 376

Query: 377 SLN------TVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLI 414
           S +      +  S DG +       WD    S+          +
Sbjct: 377 SFSPDGRVVSSGSTDGTV-----RLWDLSTGSLLRNLDGHTSRV 415

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  100 bits (249), Expect = 9e-23
 Identities = 81/399 (20%), Positives = 157/399 (39%), Gaps = 22/399 (5%)

Query: 90  QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM 149
            LS  +  G +  +    FSPDG+ L++GS DG I++W+   G+       ++ +     
Sbjct: 55  DLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----LIKSLEGLHDS 110

Query: 150 EEAVMSLAYSRDSEMLASGSQS-GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQI 208
             + ++L+    + +L + S   G VK+W ++T   L +  + HS  VT + FS D   +
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 209 LTAS-FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS-VLSASSDGTVKMWNLKT 266
            + S  D  +++  L++GK L    GH+  V+ + F+ DG   + S SSDGT+++W+L T
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGG 326
            +   +  S G SD  V+S      +       +   T+ + +++      L +      
Sbjct: 231 GKLLRSTLS-GHSDSVVSSFS---PDGSLLASGSSDGTIRLWDLRSS-SSLLRTLSGHSS 285

Query: 327 DFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDG 386
             L    SP G+ +     D  + +  +                 +     ++++     
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDL------ETGKLLSSLTLKGHEGPVSSLSFSPD 339

Query: 387 FIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQV----VLELIELRELGAARSLLRQTDP 442
               ++ G  D  ++          K ++ +  V          +   G+    +R  D 
Sbjct: 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399

Query: 443 MIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRF 481
                    + H   V  L   P    L + S D  +R 
Sbjct: 400 STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 90.5 bits (225), Expect = 3e-20
 Identities = 67/294 (22%), Positives = 117/294 (39%), Gaps = 56/294 (19%)

Query: 190 KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS 249
           K H+ GVTC+ FS D   + T S D  +++  L++G++L+  +GH+  V D+  +ADG  
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVV-CNKTNTVVIM 308
           + S SSD T+++W+L+T EC  T    G +   V+S+   P      +   ++  T+ + 
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLT--GHTS-YVSSVAFSPDG--RILSSSSRDKTIKVW 120

Query: 309 NM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTL 367
           ++  G+ + +L  G            SP G ++    +D    ++L    L+    + TL
Sbjct: 121 DVETGKCLTTL-RGHT--DWVNSVAFSPDGTFVASSSQDG--TIKLWD--LRTGKCVATL 173

Query: 368 QCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIEL 427
                                     GH   V     S     +KL+             
Sbjct: 174 T-------------------------GHTGEVNSVAFSPD--GEKLL------------- 193

Query: 428 RELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRF 481
               ++   ++  D            HE  V  +   P   LL + SEDG +R 
Sbjct: 194 --SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245

Length = 289

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 36/210 (17%)

Query: 70  IDLFRGKAAMKDQEEEKYPT-QLSKQIKFGS-------KSHVECARFSPDGQYLITGSVD 121
           I +F  ++ +KD  +  YP  +L+ + K          KS V  + F            +
Sbjct: 507 IKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNF------------E 554

Query: 122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKIA 180
           G ++VW+    ++  ++K          E+ V S+ YS  D  +LASGS  G VK+W I 
Sbjct: 555 GVVQVWDVARSQLVTEMKEH--------EKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606

Query: 181 TGQCLRKLE-KAHSLGVTCIQFSRDNSQILT-ASFDTYVRIHGLKSGKM-LKEFRGHSSF 237
            G  +  ++ KA+   + C+QF  ++ + L   S D  V  + L++ K+ L    GHS  
Sbjct: 607 QGVSIGTIKTKAN---ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663

Query: 238 VNDITFTADGHSVLSASSDGTVKMWNLKTT 267
           V+ + F  D  +++S+S+D T+K+W+L  +
Sbjct: 664 VSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 17/40 (42%), Positives = 27/40 (67%)

Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
           SG++LK  +GH+  V  + F+ DG  + S S DGT+K+W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 225 GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
           GK+L+  +GH+  V  + F+ DG+ + S S DGTV++W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 17/171 (9%)

Query: 118 GSVDGFIE----VWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK 173
           G +D F+E      +F+  +++ DLK   Q + +     V ++ + RD E  A+   + K
Sbjct: 450 GWIDPFLEGLCKYLSFSKLRVKADLK---QGDLLNSSNLVCAIGFDRDGEFFATAGVNKK 506

Query: 174 VKIWK----IATGQCLR----KLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG 225
           +KI++    I  G+ +     +L     L   C   S   SQ+ +++F+  V++  +   
Sbjct: 507 IKIFECESIIKDGRDIHYPVVELASRSKLSGICWN-SYIKSQVASSNFEGVVQVWDVARS 565

Query: 226 KMLKEFRGHSSFVNDITF-TADGHSVLSASSDGTVKMWNLKTTECTSTFKS 275
           +++ E + H   V  I + +AD   + S S DG+VK+W++       T K+
Sbjct: 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 616

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWN 128
           G    V    FSPDG+YL +GS DG I++W+
Sbjct: 10  GHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 14/187 (7%)

Query: 162 SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG 221
            +  ++ S++    + K   G  L  L       +  +  S     +L    D+ V +  
Sbjct: 2   VDNSSTSSENKSKLLKKSELGPSLNSLS------LLSLGSSESGILLLALLSDSLVSLPD 55

Query: 222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI 281
           L S       RGH   +  I F+ DG  +LS SSDGT+K+W+L   E        G  D 
Sbjct: 56  LSSL----LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLE-GLHDS 110

Query: 282 AVNSIHLLPKNTEHFVVCNKT--NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEW 339
           +V+ + L   +    ++ + +   TV + ++     + + + +           SP G+ 
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP-GKLIRTLEGHSESVTSLAFSPDGKL 169

Query: 340 IYCVGED 346
           +      
Sbjct: 170 LASGSSL 176

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220
           +G+ L+ L K H+  VT + FS D   + + S D  +++ 
Sbjct: 1   SGELLKTL-KGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWN 128
           G    V    FSPDG  L +GS DG + VW+
Sbjct: 9   GHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 182 GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI 219
           G+ LR L K H+  VT + FS D + + + S D  VR+
Sbjct: 1   GKLLRTL-KGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 380 TVDSVDGFIADINNGHWDTVLKSVQSLKLPEKK-----LIDLYEQVVLELIELREL 430
             D        I  G WD  L+ + SLK P  +       +L +Q  LEL+   +L
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWK 178
              V S+A+S D + LASGS  G +K+W 
Sbjct: 12  TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWK 178
              V S+A+S D  +LASGS  G V++W 
Sbjct: 11  TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 349 LVVRLIQQYLKESNLMKTLQCLQEETGVSL 378
            + RLI +YL  +   +T + LQ+E+G+SL
Sbjct: 5   ELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWN 128
           G  + V    +SPDG+ L +GS DG I +W+
Sbjct: 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	482
KOG0275|consensus	508		100.0
KOG0271|consensus	480		100.0
KOG0286|consensus	343		100.0
KOG0272|consensus	459		100.0
KOG0293|consensus	519		100.0
KOG0272|consensus	459		100.0
KOG0279|consensus	315		100.0
KOG0271|consensus	480		100.0
KOG0265|consensus	338		100.0
KOG0284|consensus	464		100.0
KOG0645|consensus	312		100.0
KOG0315|consensus	311		100.0
KOG0285|consensus	460		100.0
KOG0279|consensus	315		100.0
KOG0295|consensus	406		100.0
KOG0273|consensus	524		100.0
KOG0273|consensus	524		100.0
KOG0286|consensus	343		100.0
KOG0266|consensus	456		100.0
KOG0284|consensus	464		100.0
KOG0282|consensus	503		100.0
KOG0318|consensus	603		100.0
KOG0263|consensus	707		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291|consensus	893		100.0
KOG0296|consensus	399		100.0
KOG0316|consensus	307		100.0
KOG0291|consensus	893		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0643|consensus	327		100.0
KOG0315|consensus	311		100.0
KOG0263|consensus	707		100.0
KOG0319|consensus	775		100.0
KOG0278|consensus	334		100.0
KOG0276|consensus	794		100.0
KOG0318|consensus	603		100.0
KOG0640|consensus	430		100.0
KOG0276|consensus	794		100.0
KOG0295|consensus	406		100.0
KOG0283|consensus	712		100.0
KOG0319|consensus	775		100.0
KOG0281|consensus	499		100.0
KOG0306|consensus	888		100.0
KOG1407|consensus	313		100.0
KOG0645|consensus	312		100.0
KOG1446|consensus	311		100.0
KOG0296|consensus	399		100.0
KOG0292|consensus	1202		100.0
KOG0306|consensus	888		100.0
KOG0265|consensus	338		100.0
KOG0266|consensus	456		100.0
KOG0316|consensus	307		100.0
KOG0285|consensus	460		100.0
KOG0277|consensus	311		100.0
KOG0305|consensus	484		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0313|consensus	423		100.0
KOG0281|consensus	499		100.0
KOG0293|consensus	519		100.0
KOG0292|consensus	1202		100.0
KOG0772|consensus	641		100.0
KOG0288|consensus	459		100.0
KOG0268|consensus	433		100.0
KOG0282|consensus	503		100.0
KOG0299|consensus	479		100.0
KOG0277|consensus	311		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0310|consensus	487		100.0
KOG0289|consensus	506		100.0
KOG0305|consensus	484		99.98
KOG0313|consensus	423		99.98
PTZ00421	493	coronin; Provisional	99.98
KOG2096|consensus	420		99.98
KOG0973|consensus	942		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0973|consensus	942		99.97
KOG0643|consensus	327		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1407|consensus	313		99.97
KOG0264|consensus	422		99.97
KOG0294|consensus	362		99.97
KOG0647|consensus	347		99.97
KOG0283|consensus	712		99.97
KOG0641|consensus	350		99.97
KOG0278|consensus	334		99.97
KOG0275|consensus	508		99.97
KOG0641|consensus	350		99.97
KOG1446|consensus	311		99.97
KOG0289|consensus	506		99.97
KOG0310|consensus	487		99.97
KOG0274|consensus	537		99.97
KOG1408|consensus	1080		99.97
KOG1036|consensus	323		99.97
KOG0772|consensus	641		99.97
KOG0301|consensus	745		99.97
KOG0288|consensus	459		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0640|consensus	430		99.97
KOG0639|consensus	705		99.97
KOG0300|consensus	481		99.96
KOG0274|consensus	537		99.96
KOG0308|consensus	735		99.96
KOG1539|consensus	910		99.96
KOG0294|consensus	362		99.96
KOG1274|consensus	933		99.96
KOG1332|consensus	299		99.96
KOG0650|consensus	733		99.96
KOG2106|consensus	626		99.96
KOG4283|consensus	397		99.96
KOG2055|consensus	514		99.96
KOG0299|consensus	479		99.96
KOG1273|consensus	405		99.96
KOG0264|consensus	422		99.96
KOG0300|consensus	481		99.96
KOG0647|consensus	347		99.96
KOG0646|consensus	476		99.95
KOG2445|consensus	361		99.95
KOG0268|consensus	433		99.95
KOG2048|consensus	691		99.95
KOG0639|consensus	705		99.95
KOG0308|consensus	735		99.95
KOG2445|consensus	361		99.95
KOG0269|consensus	839		99.95
KOG2106|consensus	626		99.95
KOG1332|consensus	299		99.95
KOG0269|consensus	839		99.94
KOG1539|consensus	910		99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG1036|consensus	323		99.94
KOG0321|consensus	720		99.94
KOG2055|consensus	514		99.94
KOG1063|consensus	764		99.94
KOG2048|consensus	691		99.94
KOG0301|consensus	745		99.94
KOG1063|consensus	764		99.94
KOG4328|consensus	498		99.94
KOG1408|consensus	1080		99.94
KOG0270|consensus	463		99.93
KOG0267|consensus	825		99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0646|consensus	476		99.93
KOG0302|consensus	440		99.93
KOG4378|consensus	673		99.92
KOG1034|consensus	385		99.92
KOG0267|consensus	825		99.92
KOG2919|consensus	406		99.92
KOG4283|consensus	397		99.92
KOG1445|consensus	1012		99.92
KOG1538|consensus	1081		99.91
KOG4227|consensus	609		99.91
KOG1274|consensus	933		99.91
KOG1273|consensus	405		99.91
KOG0302|consensus	440		99.91
KOG1009|consensus	434		99.9
KOG0307|consensus	1049		99.9
KOG1188|consensus	376		99.9
KOG0303|consensus	472		99.9
KOG0270|consensus	463		99.9
KOG0650|consensus	733		99.9
KOG1007|consensus	370		99.89
KOG2096|consensus	420		99.89
KOG0307|consensus	1049		99.89
KOG0321|consensus	720		99.89
KOG4328|consensus	498		99.89
KOG1587|consensus	555		99.88
KOG1538|consensus	1081		99.88
KOG1963|consensus	792		99.87
KOG1240|consensus	1431		99.87
KOG4378|consensus	673		99.87
KOG1007|consensus	370		99.86
KOG2110|consensus	391		99.86
KOG0290|consensus	364		99.86
KOG0649|consensus	325		99.86
KOG2919|consensus	406		99.86
KOG1517|consensus	1387		99.86
KOG1009|consensus	434		99.86
KOG1034|consensus	385		99.86
KOG0642|consensus	577		99.86
KOG0290|consensus	364		99.86
KOG0642|consensus	577		99.86
KOG0303|consensus	472		99.86
KOG0322|consensus	323		99.85
KOG1524|consensus	737		99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG1310|consensus	758		99.85
KOG1188|consensus	376		99.84
KOG1587|consensus	555		99.83
KOG1523|consensus	361		99.83
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
KOG1334|consensus	559		99.83
KOG0649|consensus	325		99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG1445|consensus	1012		99.81
KOG1517|consensus	1387		99.8
KOG0644|consensus	1113		99.8
KOG0771|consensus	398		99.8
KOG4227|consensus	609		99.8
KOG2110|consensus	391		99.8
KOG1524|consensus	737		99.8
KOG0771|consensus	398		99.78
KOG1310|consensus	758		99.77
KOG1963|consensus	792		99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG2139|consensus	445		99.75
KOG4497|consensus	447		99.74
KOG2111|consensus	346		99.74
KOG1523|consensus	361		99.74
KOG4497|consensus	447		99.74
KOG0644|consensus	1113		99.74
KOG2139|consensus	445		99.73
KOG2321|consensus	703		99.73
KOG1272|consensus	545		99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG2394|consensus	636		99.71
KOG1334|consensus	559		99.69
KOG1272|consensus	545		99.68
KOG0322|consensus	323		99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
KOG2111|consensus	346		99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
KOG2394|consensus	636		99.65
KOG1354|consensus	433		99.62
KOG1240|consensus	1431		99.6
KOG3881|consensus	412		99.6
KOG3881|consensus	412		99.6
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.6
KOG2315|consensus	566		99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.59
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.58
KOG4547|consensus	541		99.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.57
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.56
PRK00178	430	tolB translocation protein TolB; Provisional	99.55
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.54
KOG2041|consensus	1189		99.54
KOG0974|consensus	967		99.54
KOG0280|consensus	339		99.54
PRK00178	430	tolB translocation protein TolB; Provisional	99.53
PRK04792	448	tolB translocation protein TolB; Provisional	99.53
PRK01029	428	tolB translocation protein TolB; Provisional	99.53
KOG1409|consensus	404		99.51
KOG2321|consensus	703		99.51
KOG0280|consensus	339		99.51
KOG2314|consensus	698		99.5
KOG2041|consensus	1189		99.49
COG4946	668	Uncharacterized protein related to the periplasmic	99.47
PRK01029	428	tolB translocation protein TolB; Provisional	99.47
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.45
KOG0974|consensus	967		99.44
KOG4190|consensus	1034		99.44
KOG0309|consensus	1081		99.43
KOG2315|consensus	566		99.42
KOG1409|consensus	404		99.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.39
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.36
KOG4547|consensus	541		99.36
COG4946	668	Uncharacterized protein related to the periplasmic	99.35
KOG1354|consensus	433		99.35
KOG1064|consensus	2439		99.34
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.32
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.27
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.27
PRK04043	419	tolB translocation protein TolB; Provisional	99.27
KOG0309|consensus	1081		99.25
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.25
KOG1064|consensus	2439		99.25
KOG4714|consensus	319		99.21
KOG3914|consensus	390		99.19
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.19
PRK04043	419	tolB translocation protein TolB; Provisional	99.19
KOG4532|consensus	344		99.16
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.12
KOG1912|consensus	1062		99.1
KOG4532|consensus	344		99.07
KOG4190|consensus	1034		99.06
KOG2314|consensus	698		99.05
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.05
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.04
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.04
KOG1275|consensus	1118		99.02
KOG2695|consensus	425		99.01
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.01
KOG3914|consensus	390		99.0
KOG1912|consensus	1062		98.95
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.95
KOG2066|consensus	846		98.95
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.94
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.94
KOG4714|consensus	319		98.92
KOG2695|consensus	425		98.9
KOG1832|consensus	1516		98.84
KOG3617|consensus	1416		98.83
KOG3617|consensus	1416		98.82
KOG4649|consensus	354		98.82
PRK02888	635	nitrous-oxide reductase; Validated	98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.78
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.76
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.76
KOG1920|consensus	1265		98.75
KOG0882|consensus	558		98.75
KOG1008|consensus	783		98.71
KOG1832|consensus	1516		98.71
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.7
KOG1920|consensus	1265		98.7
KOG1275|consensus	1118		98.69
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.69
KOG4649|consensus	354		98.65
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.6
KOG2114|consensus	933		98.57
PRK02888	635	nitrous-oxide reductase; Validated	98.55
KOG0882|consensus	558		98.54
KOG1645|consensus	463		98.53
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.53
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.53
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.53
KOG2066|consensus	846		98.53
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.53
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.48
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.4
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.39
COG3391	381	Uncharacterized conserved protein [Function unknow	98.38
KOG3621|consensus	726		98.38
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.36
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.36
KOG1008|consensus	783		98.34
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.34
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.33
KOG1645|consensus	463		98.32
COG3391	381	Uncharacterized conserved protein [Function unknow	98.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.24
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.22
KOG2114|consensus	933		98.2
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.16
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.14
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.12
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.09
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.09
KOG3621|consensus	726		98.08
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.06
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.05
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.03
KOG4640|consensus	665		98.01
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.97
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.97
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.96
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.93
KOG4640|consensus	665		97.9
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.86
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.83
PRK13616	591	lipoprotein LpqB; Provisional	97.76
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.76
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.75
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.7
PRK13616	591	lipoprotein LpqB; Provisional	97.67
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.65
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.63
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.62
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.57
KOG4441|consensus	571		97.56
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.52
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.51
KOG2079|consensus	1206		97.37
KOG2395|consensus	644		97.33
PHA02713	557	hypothetical protein; Provisional	97.33
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.3
KOG2395|consensus	644		97.26
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.24
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.24
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.23
KOG2079|consensus	1206		97.23
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.22
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.2
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.13
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.06
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.02
KOG4441|consensus	571		97.02
KOG2444|consensus	238		96.97
PHA02713	557	hypothetical protein; Provisional	96.96
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.86
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.81
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.79
KOG3630|consensus	1405		96.79
PHA03098	534	kelch-like protein; Provisional	96.76
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.64
KOG3630|consensus	1405		96.58
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.57
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.54
KOG2444|consensus	238		96.53
KOG4499|consensus	310		96.53
KOG1916|consensus	1283		96.53
KOG4499|consensus	310		96.46
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.41
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.37
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.27
PHA03098	534	kelch-like protein; Provisional	96.24
PRK13684	334	Ycf48-like protein; Provisional	96.16
PRK10115	686	protease 2; Provisional	96.03
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.0
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.92
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.92
PHA02790	480	Kelch-like protein; Provisional	95.9
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.81
PRK10115	686	protease 2; Provisional	95.81
KOG2280|consensus	829		95.74
KOG1897|consensus	1096		95.55
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.48
PRK13684	334	Ycf48-like protein; Provisional	95.46
PHA02790	480	Kelch-like protein; Provisional	95.44
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.39
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.38
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.37
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.37
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.97
KOG1897|consensus	1096		94.91
PLN02153	341	epithiospecifier protein	94.79
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.74
COG5167	776	VID27 Protein involved in vacuole import and degra	94.64
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.61
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.49
KOG2377|consensus	657		94.38
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.21
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.19
KOG2377|consensus	657		94.15
COG5167	776	VID27 Protein involved in vacuole import and degra	94.14
KOG1916|consensus	1283		93.95
COG3292	671	Predicted periplasmic ligand-binding sensor domain	93.8
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.31
KOG2247|consensus	615		93.15
KOG1896|consensus	1366		93.15
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.12
KOG4460|consensus	741		93.11
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.11
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.0
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.9
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.85
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.84
KOG2247|consensus	615		92.66
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.42
KOG2280|consensus	829		92.41
COG4590	733	ABC-type uncharacterized transport system, permeas	92.2
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.42
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.27
PLN02193	470	nitrile-specifier protein	91.14
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.08
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.91
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.72
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.66
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.48
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.38
PLN02153	341	epithiospecifier protein	90.3
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.16
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.02
COG5276	370	Uncharacterized conserved protein [Function unknow	89.99
COG4590	733	ABC-type uncharacterized transport system, permeas	89.99
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	89.73
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.52
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.36
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	89.33
KOG1900|consensus	1311		88.85
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.85
PLN02193	470	nitrile-specifier protein	88.76
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.51
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.48
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.41
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.18
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.17
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.84
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.54
KOG1900|consensus	1311		87.48
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	87.28
KOG4659|consensus	1899		87.04
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	86.62
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.33
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.15
KOG3616|consensus	1636		85.91
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.89
KOG2063|consensus	877		85.84
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.99
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	84.66
KOG4460|consensus	741		84.33
KOG1983|consensus	993		83.83

>KOG0275|consensus

Probab=100.00  E-value=4.1e-70  Score=448.36  Aligned_cols=390  Identities=76%  Similarity=1.228  Sum_probs=378.8

Q ss_pred             hHhhhhccCCCCCCCCCCCCCHHHHHHHHHHhhcccceeeChhHHHHHHHhHhhhhhccCCCCCCceeeccCCccccccc
Q psy8448           3 SENLLARSYFDPREAYPEGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQ   82 (482)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   82 (482)
                      +|+|+.++||||.|+|.+ .++||+|..+++++.+++...|++||+++++|+++||++.|++|+|..+.+++|.....+.
T Consensus       117 lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~VVppSRLlaLlGQaLKWQqHQGLLPPGt~iDLFRGkAA~K~~  195 (508)
T KOG0275|consen  117 LENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQ  195 (508)
T ss_pred             HHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEEcChHHHHHHHHHHhhhHhhcCCCCCCceeeeccchhhhhhh
Confidence            689999999999999987 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCC
Q psy8448          83 EEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS  162 (482)
Q Consensus        83 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~  162 (482)
                      .++.+|.++.+++.++.++.+.|..|||||++|++|+.||.|.+||..+|+..+.++......+.-|+.+|.|+.|+.|.
T Consensus       196 ~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs  275 (508)
T KOG0275|consen  196 EEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS  275 (508)
T ss_pred             HhhhchHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEE
Q psy8448         163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDIT  242 (482)
Q Consensus       163 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~  242 (482)
                      ..+++|+.||.|++|.+++|.+++.+...|...|+|+.|+.|+..+++++.|.++++.-+++|++++++++|.+.|+...
T Consensus       276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc
Q psy8448         243 FTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK  322 (482)
Q Consensus       243 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  322 (482)
                      |.++|..+++++.||+|++|+.++.+|..+++.. +.+.+|+++...|.++..+++|...+++++.++.|+.++.+..++
T Consensus       356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk  434 (508)
T KOG0275|consen  356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK  434 (508)
T ss_pred             EcCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCC
Confidence            9999999999999999999999999999999866 467899999999999999999999999999999999999999998


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcc
Q psy8448         323 REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKS  402 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (482)
                      ...+...+++.+|.|.++++.++|+.++                  +|...+|                           
T Consensus       435 REgGdFi~~~lSpkGewiYcigED~vlY------------------CF~~~sG---------------------------  469 (508)
T KOG0275|consen  435 REGGDFINAILSPKGEWIYCIGEDGVLY------------------CFSVLSG---------------------------  469 (508)
T ss_pred             ccCCceEEEEecCCCcEEEEEccCcEEE------------------EEEeecC---------------------------
Confidence            8899999999999999999999999999                  9999999                           


Q ss_pred             ccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         403 VQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                          ++                             ..          ++..|+..|..++.+|..++|||-++||.+++|
T Consensus       470 ----~L-----------------------------E~----------tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW  506 (508)
T KOG0275|consen  470 ----KL-----------------------------ER----------TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW  506 (508)
T ss_pred             ----ce-----------------------------ee----------eeecccccccccccCcccchhhhhcccchhhhc
Confidence                66                             55          888999999999999999999999999999999

>KOG0271|consensus

Probab=100.00  E-value=2.5e-51  Score=344.39  Aligned_cols=317  Identities=23%  Similarity=0.320  Sum_probs=274.5

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      ..||.++|.|++|+|+|..||+|+.|.++++||+.+.....        .+.+|...|.|++|+|||+.||+|+.||+|+
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~--------t~KgH~~WVlcvawsPDgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF--------TCKGHKNWVLCVAWSPDGKKIASGSKDGSIR  182 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce--------eecCCccEEEEEEECCCcchhhccccCCeEE
Confidence            34999999999999999999999999999999999865443        4455789999999999999999999999999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEcc-----CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSR-----DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  250 (482)
                      +||.++++++..-..+|...|++++|.|     ..++|++++.||.|+|||+..++++..+.+|..+|+|++|--+ .+|
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gli  261 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLI  261 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceE
Confidence            9999999888766689999999999977     5678999999999999999999999999999999999999765 579


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC-----------------------------------CCCE
Q psy8448         251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK-----------------------------------NTEH  295 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----------------------------------~~~~  295 (482)
                      ++|+.|++|++|+...|.+.+.++   +|...|+.++.+.+                                   +++.
T Consensus       262 ySgS~DrtIkvw~a~dG~~~r~lk---GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er  338 (480)
T KOG0271|consen  262 YSGSQDRTIKVWRALDGKLCRELK---GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER  338 (480)
T ss_pred             EecCCCceEEEEEccchhHHHhhc---ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence            999999999999999999988888   99999999988721                                   2357


Q ss_pred             EEEEeCCCeEEEEEc--CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeec
Q psy8448         296 FVVCNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEE  373 (482)
Q Consensus       296 l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  373 (482)
                      +++|+.|.++.+|+.  ..+++..+.+|   ..-|+.+.|+||++++++++.|..|+                  +|+..
T Consensus       339 lVSgsDd~tlflW~p~~~kkpi~rmtgH---q~lVn~V~fSPd~r~IASaSFDkSVk------------------LW~g~  397 (480)
T KOG0271|consen  339 LVSGSDDFTLFLWNPFKSKKPITRMTGH---QALVNHVSFSPDGRYIASASFDKSVK------------------LWDGR  397 (480)
T ss_pred             eEEecCCceEEEecccccccchhhhhch---hhheeeEEECCCccEEEEeeccccee------------------eeeCC
Confidence            999999999999998  34566666655   78899999999999999999999999                  88899


Q ss_pred             ccceeecccccccceeccCC---------CcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCccc
Q psy8448         374 TGVSLNTVDSVDGFIADINN---------GHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMI  444 (482)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (482)
                      +|+.+.++.+|-+.+..+++         ++.|.++++|.-                           ..+.+.+     
T Consensus       398 tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V---------------------------~tkKl~~-----  445 (480)
T KOG0271|consen  398 TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV---------------------------RTKKLKQ-----  445 (480)
T ss_pred             CcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe---------------------------eeeeecc-----
Confidence            99999999888777765544         444555544411                           0111244     


Q ss_pred             ccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         445 FMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       445 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                           .++||.++|.++.|+|||+.+++|+.|..+++|
T Consensus       446 -----DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  446 -----DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             -----cCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence                 899999999999999999999999999999999

>KOG0286|consensus

Probab=100.00  E-value=2.6e-47  Score=309.37  Aligned_cols=286  Identities=23%  Similarity=0.367  Sum_probs=257.9

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      .++.||.+.|.++.|++|.++|++++.||.+.|||.-+....+-++.+        ...|..++|+|.|+++|+|+.|..
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~--------s~WVMtCA~sPSg~~VAcGGLdN~  120 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP--------SSWVMTCAYSPSGNFVACGGLDNK  120 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC--------ceeEEEEEECCCCCeEEecCcCce
Confidence            667799999999999999999999999999999999888777777766        578999999999999999999999


Q ss_pred             EEEEEcCCC------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC-C
Q psy8448         174 VKIWKIATG------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-D  246 (482)
Q Consensus       174 i~iwd~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~-~  246 (482)
                      ..||++.+.      ...+.+ .+|.+.+.|+.|-+| ..|++++.|.++.+||+++++.+..|.+|.+.|.+++++| +
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l-~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~  198 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSREL-AGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD  198 (343)
T ss_pred             eEEEecccccccccceeeeee-cCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence            999999755      233445 799999999999875 5799999999999999999999999999999999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccC
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREG  325 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~  325 (482)
                      ++.+++|+.|+..++||++.+.+.+.|.   +|+..|+++.|.|+| .-|++|+.|++.++||++ .+.+..+.. ....
T Consensus       199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~---ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys~-~~~~  273 (343)
T KOG0286|consen  199 GNTFVSGGCDKSAKLWDVRSGQCVQTFE---GHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELAVYSH-DSII  273 (343)
T ss_pred             CCeEEecccccceeeeeccCcceeEeec---ccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEeeecc-Cccc
Confidence            9999999999999999999999999999   999999999999999 899999999999999995 666666653 3347


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccc
Q psy8448         326 GDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQS  405 (482)
Q Consensus       326 ~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (482)
                      .+|++++|+..|++|++|..|..+.                  +||.-.+                              
T Consensus       274 ~gitSv~FS~SGRlLfagy~d~~c~------------------vWDtlk~------------------------------  305 (343)
T KOG0286|consen  274 CGITSVAFSKSGRLLFAGYDDFTCN------------------VWDTLKG------------------------------  305 (343)
T ss_pred             CCceeEEEcccccEEEeeecCCcee------------------Eeecccc------------------------------
Confidence            8899999999999999999999999                  5665555                              


Q ss_pred             cCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         406 LKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       406 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                       +.                             ..          .+.+|.+.|+++..+|||.-|+|||.|.++|||
T Consensus       306 -e~-----------------------------vg----------~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  306 -ER-----------------------------VG----------VLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             -ce-----------------------------EE----------EeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence             11                             22          778999999999999999999999999999999

>KOG0272|consensus

Probab=100.00  E-value=5.6e-49  Score=334.44  Aligned_cols=281  Identities=23%  Similarity=0.324  Sum_probs=257.1

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC--CCEEEEEeCCCcEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD--SEMLASGSQSGKVK  175 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--~~~l~~~~~dg~i~  175 (482)
                      |-+.+|..+.||+|++.||||+.+|.+++|+..+...+.+        +.+|.+.+.++.|+|.  +..+++|+.||+++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~--------l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk  244 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQT--------LRGHTSRVGAAVFHPVDSDLNLATASADGTVK  244 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEE--------EeccccceeeEEEccCCCccceeeeccCCcee
Confidence            7788999999999999999999999999999988755544        4456899999999996  66899999999999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS  255 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~  255 (482)
                      +|++.+...+..+ .+|...|..++|+|+|++|++++.|.+-++||+++++.+....+|...|.+++|.|||.++++|+.
T Consensus       245 lw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl  323 (459)
T KOG0272|consen  245 LWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL  323 (459)
T ss_pred             eeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc
Confidence            9999998999999 799999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEc
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      |..-+|||++++.++..+.   +|..+|.+++|+|+| ..+++|+.|++++|||++ ...+..+..|   ..-|+.+.|+
T Consensus       324 D~~~RvWDlRtgr~im~L~---gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ly~ipAH---~nlVS~Vk~~  396 (459)
T KOG0272|consen  324 DSLGRVWDLRTGRCIMFLA---GHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSELYTIPAH---SNLVSQVKYS  396 (459)
T ss_pred             cchhheeecccCcEEEEec---ccccceeeEeECCCc-eEEeecCCCCcEEEeeecccccceecccc---cchhhheEec
Confidence            9999999999999999998   899999999999999 899999999999999995 4456666655   7889999999


Q ss_pred             C-CCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhh
Q psy8448         335 P-RGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKL  413 (482)
Q Consensus       335 ~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  413 (482)
                      | .|.+|++++.|++++                  +|...+.                               .+     
T Consensus       397 p~~g~fL~TasyD~t~k------------------iWs~~~~-------------------------------~~-----  422 (459)
T KOG0272|consen  397 PQEGYFLVTASYDNTVK------------------IWSTRTW-------------------------------SP-----  422 (459)
T ss_pred             ccCCeEEEEcccCccee------------------eecCCCc-------------------------------cc-----
Confidence            8 789999999999999                  5555554                               22     


Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         414 IDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                              ..          .+.||++.|.+++.+||++.++|++.|.++++|
T Consensus       423 ------------------------~k----------sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  423 ------------------------LK----------SLAGHEGKVISLDISPDSQAIATSSFDRTIKLW  457 (459)
T ss_pred             ------------------------ch----------hhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence                                    33          888999999999999999999999999999999

>KOG0293|consensus

Probab=100.00  E-value=7.3e-45  Score=308.41  Aligned_cols=343  Identities=20%  Similarity=0.302  Sum_probs=280.4

Q ss_pred             cccceeeChhHHHHHHHhHhhhhhccCCCCCCce-eeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCE
Q psy8448          36 VGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTT-IDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQY  114 (482)
Q Consensus        36 ~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  114 (482)
                      ..+-.+.|..||+.++.++++.|+..++....-. +.+..+..+    .....|.+.. +++..|++.|..+.||++|++
T Consensus       164 i~p~illP~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~Dh~c----~~~qip~qt~-qil~~htdEVWfl~FS~nGky  238 (519)
T KOG0293|consen  164 IPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLSDHFC----GRLQIPSQTW-QILQDHTDEVWFLQFSHNGKY  238 (519)
T ss_pred             CCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccchhhhhhhccc----CcccCCchhh-hhHhhCCCcEEEEEEcCCCee
Confidence            3344589999999999999999999998765321 222222211    2233444443 566799999999999999999


Q ss_pred             EEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCC
Q psy8448         115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSL  194 (482)
Q Consensus       115 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  194 (482)
                      ||+++.|.+..||.+.....     ......+.+|..+|..+.|+||.++|++|+.|..+.+||+.+|.....+..++..
T Consensus       239 LAsaSkD~Taiiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~  313 (519)
T KOG0293|consen  239 LASASKDSTAIIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGF  313 (519)
T ss_pred             EeeccCCceEEEEEEecCcc-----eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCC
Confidence            99999999999999876543     2334466778999999999999999999999999999999999999988777778


Q ss_pred             CeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccc-cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q psy8448         195 GVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS-SFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF  273 (482)
Q Consensus       195 ~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  273 (482)
                      .+.+++|.|||..+++|+.|+.+..||++ |......++-. ..|.+++..+||+++++.+.|..|++|+.++......+
T Consensus       314 S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li  392 (519)
T KOG0293|consen  314 SVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI  392 (519)
T ss_pred             CcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc
Confidence            99999999999999999999999999985 44445554433 45899999999999999999999999999887665544


Q ss_pred             eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       274 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                          ....+|+++..+.++ +++++.-.+..+.+||+ +.+.+..+.+++....-|.++-=..+..++++|++|+.|+  
T Consensus       393 ----se~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy--  465 (519)
T KOG0293|consen  393 ----SEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY--  465 (519)
T ss_pred             ----cccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEE--
Confidence                456799999999998 89999999999999999 5677777777765444455444445668999999999999  


Q ss_pred             eehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhh
Q psy8448         353 LIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGA  432 (482)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  432 (482)
                                      +|+..+|                               ++                        
T Consensus       466 ----------------IWhr~sg-------------------------------kl------------------------  474 (519)
T KOG0293|consen  466 ----------------IWHRISG-------------------------------KL------------------------  474 (519)
T ss_pred             ----------------EEEccCC-------------------------------ce------------------------
Confidence                            7777777                               44                        


Q ss_pred             hhhhccccCcccccccCcceecccceeeccccCCc-ceEEEEecCceeecC
Q psy8448         433 ARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQ-NLLGTYSEDGLLRFS  482 (482)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~~~Dg~i~iW  482 (482)
                           ..          ++.||...|++++|+|.. .++||||+||+||||
T Consensus       475 -----l~----------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW  510 (519)
T KOG0293|consen  475 -----LA----------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW  510 (519)
T ss_pred             -----eE----------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence                 44          889999999999999975 589999999999999

>KOG0272|consensus

Probab=100.00  E-value=9.8e-44  Score=302.55  Aligned_cols=269  Identities=23%  Similarity=0.318  Sum_probs=240.5

Q ss_pred             CCCceee--ccCCccccccccccccccccceeeecCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEecCCCceeecccc
Q psy8448          65 PPGTTID--LFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPD--GQYLITGSVDGFIEVWNFTTGKIRKDLKY  140 (482)
Q Consensus        65 ~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  140 (482)
                      .++..++  .++|...+|....-     ...+.+.||+..|.++.|+|.  +..||+|+.||++++|++++...+..   
T Consensus       185 ~ds~~laT~swsG~~kvW~~~~~-----~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~---  256 (459)
T KOG0272|consen  185 RDSKHLATGSWSGLVKVWSVPQC-----NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD---  256 (459)
T ss_pred             cCCCeEEEeecCCceeEeecCCc-----ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh---
Confidence            4444443  36788888886543     233456699999999999995  67899999999999999987654444   


Q ss_pred             ccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448         141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH  220 (482)
Q Consensus       141 ~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~  220 (482)
                           +.+|...|..++|+|+|++|++++.|.+-++||++++..+... .+|..+|.+++|++||..+++|+.|..-+||
T Consensus       257 -----l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW  330 (459)
T KOG0272|consen  257 -----LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGSLAATGGLDSLGRVW  330 (459)
T ss_pred             -----hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCceeeccCccchhhee
Confidence                 4456789999999999999999999999999999998877766 7999999999999999999999999999999


Q ss_pred             eCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448         221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       221 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      |++++.++..+.+|..+|.+++|+|+|..|++|+.|++++|||++...++..+.   +|.+-|+.+.|.|+.+.+|++++
T Consensus       331 DlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip---AH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  331 DLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP---AHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             ecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc---cccchhhheEecccCCeEEEEcc
Confidence            999999999999999999999999999999999999999999999998877777   99999999999997779999999


Q ss_pred             CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         301 KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       301 ~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      .|+++++|.. .+.+++.+.+|   .+.|.++.+++|++++++++.|.++++|.
T Consensus       408 yD~t~kiWs~~~~~~~ksLaGH---e~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  408 YDNTVKIWSTRTWSPLKSLAGH---EGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCcceeeecCCCcccchhhcCC---ccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999 68888888877   88999999999999999999999999773

>KOG0279|consensus

Probab=100.00  E-value=1.1e-41  Score=275.14  Aligned_cols=248  Identities=22%  Similarity=0.324  Sum_probs=214.5

Q ss_pred             ceeeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC
Q psy8448          92 SKQIKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ  170 (482)
Q Consensus        92 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~  170 (482)
                      .+.++.+|++.|+.++..+. .+.+++++.|.++.+|++.....   ........+.+|+..|..+..+++|++.++++.
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~---~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI---KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc---ccCceeeeeeccceEecceEEccCCceEEeccc
Confidence            34556799999999999985 67889999999999999986632   223445677889999999999999999999999


Q ss_pred             CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc--ccceeEEEEcCC--
Q psy8448         171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH--SSFVNDITFTAD--  246 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~l~~~~~--  246 (482)
                      |+++++||+.+++..+.| .+|...|.+++|++|++.|++|+.|.+|++|++... +..++..+  .+.|.|+.|+|+  
T Consensus        84 D~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             cceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCC
Confidence            999999999999998888 799999999999999999999999999999998644 44444433  788999999997  


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccC
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREG  325 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~  325 (482)
                      ..+|++++.|++|++||+++.+....+.   +|...++.++++||| .++++|+.||.+.+||+ +++.++.+..    .
T Consensus       162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~---gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl~a----~  233 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNLRNCQLRTTFI---GHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSLEA----F  233 (315)
T ss_pred             CcEEEEccCCceEEEEccCCcchhhccc---cccccEEEEEECCCC-CEEecCCCCceEEEEEccCCceeEeccC----C
Confidence            7899999999999999999998888877   899999999999999 89999999999999999 6777777764    6


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         326 GDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       326 ~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ..|.+++|+|+.-+|+.+.. ..|+||+
T Consensus       234 ~~v~sl~fspnrywL~~at~-~sIkIwd  260 (315)
T KOG0279|consen  234 DIVNSLCFSPNRYWLCAATA-TSIKIWD  260 (315)
T ss_pred             CeEeeEEecCCceeEeeccC-CceEEEe
Confidence            78999999999877765554 4588443

>KOG0271|consensus

Probab=100.00  E-value=9.6e-43  Score=292.83  Aligned_cols=272  Identities=24%  Similarity=0.418  Sum_probs=234.5

Q ss_pred             CCCCCceeeccCCc--cccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccc
Q psy8448          63 LLPPGTTIDLFRGK--AAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY  140 (482)
Q Consensus        63 ~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  140 (482)
                      +.|+|..++..+|+  +.+|+...+.+-     ....+|++.|.|++|+|||+.||+|+.||+|++||..+|+.+.    
T Consensus       123 fsp~g~~l~tGsGD~TvR~WD~~TeTp~-----~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g----  193 (480)
T KOG0271|consen  123 FSPTGSRLVTGSGDTTVRLWDLDTETPL-----FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG----  193 (480)
T ss_pred             ecCCCceEEecCCCceEEeeccCCCCcc-----eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc----
Confidence            34777777776665  677876554432     3334999999999999999999999999999999999987542    


Q ss_pred             ccccccccccccEEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC
Q psy8448         141 QAQDNFMLMEEAVMSLAYSR-----DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT  215 (482)
Q Consensus       141 ~~~~~~~~h~~~i~~l~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg  215 (482)
                         ..+.+|...|++++|.|     ..++|++++.||.|+|||+..+.++..+ .+|..+|+|+.|--+| +|++|+.|+
T Consensus       194 ---~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG~g-liySgS~Dr  268 (480)
T KOG0271|consen  194 ---RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGGEG-LIYSGSQDR  268 (480)
T ss_pred             ---ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEEEEcCCc-eEEecCCCc
Confidence               34567899999999987     5679999999999999999999999988 7999999999997554 899999999


Q ss_pred             eEEEEeCCCCceEEEeeccccceeEEEEc-----------CCC-------------------------CEEEEEeCCCcE
Q psy8448         216 YVRIHGLKSGKMLKEFRGHSSFVNDITFT-----------ADG-------------------------HSVLSASSDGTV  259 (482)
Q Consensus       216 ~i~i~d~~~~~~~~~~~~~~~~i~~l~~~-----------~~~-------------------------~~l~~~~~dg~i  259 (482)
                      +|++|+...|.+..++++|...|+.++.+           |.+                         ..|++|+.|.++
T Consensus       269 tIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl  348 (480)
T KOG0271|consen  269 TIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL  348 (480)
T ss_pred             eEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence            99999999999999999999999999887           223                         359999999999


Q ss_pred             EEEECCCC-ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         260 KMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       260 ~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      .+|+.... +++..+.   +|..-|+.+.|+|++ .++++++-|..|++|+. +|+.+..+.+|   -..|+.++|+.|.
T Consensus       349 flW~p~~~kkpi~rmt---gHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~lasfRGH---v~~VYqvawsaDs  421 (480)
T KOG0271|consen  349 FLWNPFKSKKPITRMT---GHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFLASFRGH---VAAVYQVAWSADS  421 (480)
T ss_pred             EEecccccccchhhhh---chhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchhhhhhhc---cceeEEEEeccCc
Confidence            99997643 3555555   999999999999999 89999999999999999 79988888876   7899999999999


Q ss_pred             CEEEEEeCCcEEEEEeeh
Q psy8448         338 EWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       338 ~~l~~~~~dg~i~iw~~~  355 (482)
                      ++|++|+.|.++++|+++
T Consensus       422 RLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  422 RLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             cEEEEcCCCceEEEEEee
Confidence            999999999999966554

>KOG0265|consensus

Probab=100.00  E-value=5.5e-41  Score=273.74  Aligned_cols=286  Identities=21%  Similarity=0.314  Sum_probs=247.8

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      ..+.||++.|+.+.|+|+|.+||+|+.|..|.+|++....       +....+.+|.+.|..+.|.++++.+++++.|.+
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT  113 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-------cceeeeccccceeEeeeeccCCCEEEEecCCce
Confidence            3455999999999999999999999999999999965432       222344578999999999999999999999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      ++.||.++|+..+++ +.|..-|+.+.-+.-| .++.+++.|+++++||+++.+.++++. .+..++++.|..++..+.+
T Consensus       114 v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~s  191 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVIS  191 (338)
T ss_pred             EEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceee
Confidence            999999999999999 7899999998855545 456788999999999999999888876 4677999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC----CcE-EEEecCCccc--C
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ----GQI-VRSLSSGKRE--G  325 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~----~~~-~~~~~~~~~~--~  325 (482)
                      |+-|+.|++||++.......+.   +|..+|+.+..+|+| ..+.+-+.|.++++||++    ++. +..+.++ .|  .
T Consensus       192 ggIdn~ikvWd~r~~d~~~~ls---Gh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~-~hnfe  266 (338)
T KOG0265|consen  192 GGIDNDIKVWDLRKNDGLYTLS---GHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH-IHNFE  266 (338)
T ss_pred             ccccCceeeeccccCcceEEee---cccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecc-hhhhh
Confidence            9999999999999999888888   999999999999999 899999999999999994    333 5555443 22  3


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccc
Q psy8448         326 GDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQS  405 (482)
Q Consensus       326 ~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (482)
                      .....++|+|++..+.+|+.|..++                  +|+..+.                              
T Consensus       267 knlL~cswsp~~~~i~ags~dr~vy------------------vwd~~~r------------------------------  298 (338)
T KOG0265|consen  267 KNLLKCSWSPNGTKITAGSADRFVY------------------VWDTTSR------------------------------  298 (338)
T ss_pred             hhcceeeccCCCCccccccccceEE------------------Eeecccc------------------------------
Confidence            3456899999999999999999999                  6666554                              


Q ss_pred             cCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeec
Q psy8448         406 LKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRF  481 (482)
Q Consensus       406 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~i  481 (482)
                       .+                             ++          .++||.+.|++++|+|..++|.+++.|.+|++
T Consensus       299 -~~-----------------------------ly----------klpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  299 -RI-----------------------------LY----------KLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             -cE-----------------------------EE----------EcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence             33                             66          89999999999999999999999999999975

>KOG0284|consensus

Probab=100.00  E-value=4.3e-42  Score=291.23  Aligned_cols=293  Identities=22%  Similarity=0.382  Sum_probs=248.4

Q ss_pred             cccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE
Q psy8448          87 YPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA  166 (482)
Q Consensus        87 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  166 (482)
                      +..++.+.-...-+-+|..+.|.|+|+.|++|+..|.+.+|+...        +.....+..|+++|.++.|++++.+++
T Consensus        83 ~~tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--------fnFEtilQaHDs~Vr~m~ws~~g~wmi  154 (464)
T KOG0284|consen   83 FTTKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--------FNFETILQAHDSPVRTMKWSHNGTWMI  154 (464)
T ss_pred             cccceEeccccccccceeeEEEcCCCceeEeecccccEEEecCce--------eeHHHHhhhhcccceeEEEccCCCEEE
Confidence            344444433334456899999999999999999999999999743        233334556899999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCC
Q psy8448         167 SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD  246 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~  246 (482)
                      +|+.+|.|++|+.... .+..+...|...|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.+++|+|.
T Consensus       155 SgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~  233 (464)
T KOG0284|consen  155 SGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT  233 (464)
T ss_pred             EcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc
Confidence            9999999999997544 344443566689999999999999999999999999999999998999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccC
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREG  325 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~  325 (482)
                      ..++++++.|..|++||.+++.++.++.   .|...|..+.|.|++ ++|++++.|..++++|++ -+.+..+..|   .
T Consensus       234 kgLiasgskDnlVKlWDprSg~cl~tlh---~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~H---k  306 (464)
T KOG0284|consen  234 KGLIASGSKDNLVKLWDPRSGSCLATLH---GHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGH---K  306 (464)
T ss_pred             cceeEEccCCceeEeecCCCcchhhhhh---hccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcc---h
Confidence            9999999999999999999999999988   999999999999999 999999999999999996 5556666554   7


Q ss_pred             cCEEEEEEcCCC-CEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccc
Q psy8448         326 GDFLCCTTSPRG-EWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQ  404 (482)
Q Consensus       326 ~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (482)
                      ..++++.|+|-. .++.+|+.||.|..|.+.                .+..                             
T Consensus       307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~----------------~~~p-----------------------------  341 (464)
T KOG0284|consen  307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVG----------------LEEP-----------------------------  341 (464)
T ss_pred             hhheeeccccccccceeeccCCCceEEEecc----------------cccc-----------------------------
Confidence            889999999964 567789999999966432                1111                             


Q ss_pred             ccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         405 SLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       405 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                         +                             ..          .-.+|...|.+++|+|-|.+|+||+.|.++++|
T Consensus       342 ---~-----------------------------~~----------i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw  377 (464)
T KOG0284|consen  342 ---L-----------------------------GE----------IPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW  377 (464)
T ss_pred             ---c-----------------------------cC----------CCcccccceeeeeccccceeEeecCCCcceeee
Confidence               1                             11          345899999999999999999999999999998

>KOG0645|consensus

Probab=100.00  E-value=1.9e-39  Score=260.96  Aligned_cols=291  Identities=23%  Similarity=0.342  Sum_probs=236.0

Q ss_pred             eeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          94 QIKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      +.+.+|++.|..++|+|- |..||+|+.|+.|+||+...+....   .... .-.+|+..|.+++|+|.|++|++++.|.
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~---ck~v-ld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT---CKTV-LDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE---EEEe-ccccchheeeeeeecCCCcEEEEeeccc
Confidence            455699999999999997 8999999999999999988533211   1100 0124789999999999999999999999


Q ss_pred             cEEEEEcCCC--eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC---ceEEEeeccccceeEEEEcCCC
Q psy8448         173 KVKIWKIATG--QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG---KMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       173 ~i~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      ++.||.-..+  +++..+ .+|...|.|++|+++|.+||+++.|+.|-||.+...   ++...+++|...|..+.|+|..
T Consensus        84 t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~  162 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE  162 (312)
T ss_pred             eEEEeecCCCceeEEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence            9999986544  567777 699999999999999999999999999999998744   5678899999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCC---CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCccc
Q psy8448         248 HSVLSASSDGTVKMWNLKT---TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE  324 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  324 (482)
                      .+|++++.|.+|++|+-..   -++..++.   +|...|.+++|.+.| ..+++++.|++++||-..    ..+  ...+
T Consensus       163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~---g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~----~~~--~~~~  232 (312)
T KOG0645|consen  163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLD---GHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLY----TDL--SGMH  232 (312)
T ss_pred             ceeEEeccCCeEEEEeecCCCCeeEEEEec---CccceEEEEEecCCC-ceEEEecCCcceEeeeec----cCc--chhc
Confidence            9999999999999998773   34566666   888899999999999 899999999999999753    111  1223


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccc
Q psy8448         325 GGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQ  404 (482)
Q Consensus       325 ~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (482)
                      ...+..++|.  ...|++++.|+.|+                  +|....+                             
T Consensus       233 sr~~Y~v~W~--~~~IaS~ggD~~i~------------------lf~~s~~-----------------------------  263 (312)
T KOG0645|consen  233 SRALYDVPWD--NGVIASGGGDDAIR------------------LFKESDS-----------------------------  263 (312)
T ss_pred             ccceEeeeec--ccceEeccCCCEEE------------------EEEecCC-----------------------------
Confidence            6788999998  55899999999999                  4444433                             


Q ss_pred             ccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCC-cceEEEEecCceeecC
Q psy8448         405 SLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPH-QNLLGTYSEDGLLRFS  482 (482)
Q Consensus       405 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~s~~~Dg~i~iW  482 (482)
                          ++++.+...                    ..          .-..|...|++++|.|. .++|++|++||.|++|
T Consensus       264 ----~d~p~~~l~--------------------~~----------~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W  308 (312)
T KOG0645|consen  264 ----PDEPSWNLL--------------------AK----------KEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFW  308 (312)
T ss_pred             ----CCCchHHHH--------------------Hh----------hhcccccccceEEEcCCCCCceeecCCCceEEEE
Confidence                111111111                    11          33479999999999996 6799999999999998

>KOG0315|consensus

Probab=100.00  E-value=2.9e-40  Score=262.46  Aligned_cols=269  Identities=20%  Similarity=0.345  Sum_probs=232.2

Q ss_pred             CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE--eEEeec
Q psy8448         113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC--LRKLEK  190 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~  190 (482)
                      -+|++++.|.+|++|...+|.+..+++..        ++.|+.+...|+++.||+++.. .|++||++++..  +..+ .
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~--------dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~-e   80 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHP--------DSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATF-E   80 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecC--------ccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEE-e
Confidence            47899999999999999999999888766        5789999999999999998764 899999988764  6667 6


Q ss_pred             ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q psy8448         191 AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECT  270 (482)
Q Consensus       191 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  270 (482)
                      +|...|+++.|..+|+++++|++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+.+..+.
T Consensus        81 ~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   81 GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence            899999999999999999999999999999999987777776 7799999999999999999999999999999988776


Q ss_pred             eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-C---cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         271 STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-G---QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       271 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~---~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      ..+.+  ....+|.+++..|+| .+++++...|..++|++. .   ..+..+.....|.+.+..+.+|||+++|++++.|
T Consensus       160 ~~liP--e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  160 HELIP--EDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             cccCC--CCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            66543  456789999999999 899999999999999993 2   2333344444568889999999999999999999


Q ss_pred             cEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHH
Q psy8448         347 MVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIE  426 (482)
Q Consensus       347 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  426 (482)
                      .+++||..+                  +..                              ++                  
T Consensus       237 ktv~iwn~~------------------~~~------------------------------kl------------------  250 (311)
T KOG0315|consen  237 KTVKIWNTD------------------DFF------------------------------KL------------------  250 (311)
T ss_pred             ceEEEEecC------------------Cce------------------------------ee------------------
Confidence            999966543                  220                              11                  


Q ss_pred             HHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         427 LRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                 ..          .+.+|...+...+||.||++|+||+.|+.+|+|
T Consensus       251 -----------e~----------~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  251 -----------EL----------VLTGHQRWVWDCAFSADGEYLVTASSDHTARLW  285 (311)
T ss_pred             -----------EE----------EeecCCceEEeeeeccCccEEEecCCCCceeec
Confidence                       22          778999999999999999999999999999999

>KOG0285|consensus

Probab=100.00  E-value=2.7e-40  Score=275.79  Aligned_cols=248  Identities=21%  Similarity=0.395  Sum_probs=222.5

Q ss_pred             cccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE
Q psy8448          89 TQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG  168 (482)
Q Consensus        89 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~  168 (482)
                      -++. .+..+|.+.|.|+++.|...+|++|+.|++++|||+.+|++..++..        |-..|..+++++...|++++
T Consensus       141 wKl~-rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG--------hi~~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  141 WKLY-RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG--------HIETVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             ceeh-hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc--------hhheeeeeeecccCceEEEe
Confidence            3444 34459999999999999999999999999999999999998776654        46789999999999999999


Q ss_pred             eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         169 SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      +.|+.|+.||++.++.++.+ .+|-..|.|++.+|.-..|++|+.|..+++||+++...+..+.+|..+|..+.+.|...
T Consensus       212 gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp  290 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP  290 (460)
T ss_pred             cCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC
Confidence            99999999999999999999 79999999999999999999999999999999999999999999999999999999888


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcC
Q psy8448         249 SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGD  327 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~  327 (482)
                      .+++|+.|++|++||++.++....+.   .|+..+.+++.+|.. ..|++++.| .|+-|++ .|..+..+..+   ...
T Consensus       291 qvit~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh---~~i  362 (460)
T KOG0285|consen  291 QVITGSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGH---NAI  362 (460)
T ss_pred             ceEEecCCceEEEeeeccCceeEeee---cccceeeEEecCCch-hhhhccCCc-cceeccCCccchhhccccc---cce
Confidence            89999999999999999999888887   899999999999986 667776666 6899999 67777776554   778


Q ss_pred             EEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         328 FLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       328 v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +.+++.+.|| ++++|+++|.+.+||++
T Consensus       363 intl~~nsD~-v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  363 INTLSVNSDG-VLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             eeeeeeccCc-eEEEcCCceEEEEEecC
Confidence            8999998876 78899999999966554

>KOG0279|consensus

Probab=100.00  E-value=1.7e-39  Score=262.42  Aligned_cols=267  Identities=23%  Similarity=0.389  Sum_probs=224.3

Q ss_pred             CccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE
Q psy8448          75 GKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM  154 (482)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~  154 (482)
                      -.+..|.....+.+.......+.||...|..+..++||++.++++.|+++++||+.+++....+        .+|...|.
T Consensus        38 k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f--------~GH~~dVl  109 (315)
T KOG0279|consen   38 KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF--------VGHTKDVL  109 (315)
T ss_pred             eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE--------EecCCceE
Confidence            3456677777777776667777899999999999999999999999999999999998755544        44678999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448         155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       155 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~  232 (482)
                      +++|++|++.+++|+.|.+|++|++............+..-|.|+.|+|+  ..+|++++.|++|++||+++.+....+.
T Consensus       110 sva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~  189 (315)
T KOG0279|consen  110 SVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI  189 (315)
T ss_pred             EEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence            99999999999999999999999986554443332233778999999997  7899999999999999999999999999


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-
Q psy8448         233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-  311 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-  311 (482)
                      +|.+.++.++++|||...++|+.||.+.+||++.+++...+    .+...|.+++|+|+.  +.++...+..|+|||+. 
T Consensus       190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl----~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL----EAFDIVNSLCFSPNR--YWLCAATATSIKIWDLES  263 (315)
T ss_pred             cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec----cCCCeEeeEEecCCc--eeEeeccCCceEEEeccc
Confidence            99999999999999999999999999999999999998887    778899999999984  55556666679999994 


Q ss_pred             CcEEEEecCCc------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         312 GQIVRSLSSGK------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       312 ~~~~~~~~~~~------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +..+..+....      .......+++|++||..|++|..|+.|++|.+.
T Consensus       264 ~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  264 KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            55544443211      113345679999999999999999999977653

>KOG0295|consensus

Probab=100.00  E-value=9.1e-40  Score=273.30  Aligned_cols=293  Identities=23%  Similarity=0.379  Sum_probs=260.5

Q ss_pred             cccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE
Q psy8448          87 YPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA  166 (482)
Q Consensus        87 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  166 (482)
                      .|..-..+-+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...        +.+|.+.+..++|+..|++|+
T Consensus        95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~--------LrGHt~sv~di~~~a~Gk~l~  166 (406)
T KOG0295|consen   95 IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERS--------LRGHTDSVFDISFDASGKYLA  166 (406)
T ss_pred             CCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhh--------hhccccceeEEEEecCccEEE
Confidence            344333344558999999999999999999999999999999999987444        445678899999999999999


Q ss_pred             EEeCCCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC
Q psy8448         167 SGSQSGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA  245 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~  245 (482)
                      +++.|-.+++||..+ .++++.+ .+|.-.|.+++|-|.|.+|++++.|.+|+.|++.++-++.++.+|...|..+..+.
T Consensus       167 tcSsDl~~~LWd~~~~~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~  245 (406)
T KOG0295|consen  167 TCSSDLSAKLWDFDTFFRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ  245 (406)
T ss_pred             ecCCccchhheeHHHHHHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence            999998899999877 3445555 68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC--------------CCEEEEEeCCCeEEEEEc-
Q psy8448         246 DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN--------------TEHFVVCNKTNTVVIMNM-  310 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--------------~~~l~~~~~d~~i~i~d~-  310 (482)
                      ||..+++++.|.+|++|-+.++++...++   .|+.+|.+++|.|..              ..++.+++.|++|++||+ 
T Consensus       246 DGti~As~s~dqtl~vW~~~t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~  322 (406)
T KOG0295|consen  246 DGTIIASCSNDQTLRVWVVATKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS  322 (406)
T ss_pred             CeeEEEecCCCceEEEEEeccchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc
Confidence            99999999999999999999998888888   899999999998742              258999999999999999 


Q ss_pred             CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceec
Q psy8448         311 QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIAD  390 (482)
Q Consensus       311 ~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (482)
                      .+..+.++.++   ...|..++|+|.|+||+++.+|++++                  +|+++++.++            
T Consensus       323 tg~cL~tL~gh---dnwVr~~af~p~Gkyi~ScaDDktlr------------------vwdl~~~~cm------------  369 (406)
T KOG0295|consen  323 TGMCLFTLVGH---DNWVRGVAFSPGGKYILSCADDKTLR------------------VWDLKNLQCM------------  369 (406)
T ss_pred             CCeEEEEEecc---cceeeeeEEcCCCeEEEEEecCCcEE------------------EEEeccceee------------
Confidence            79999999887   88999999999999999999999999                  6666666222            


Q ss_pred             cCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceE
Q psy8448         391 INNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLL  470 (482)
Q Consensus       391 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l  470 (482)
                                                                      .          ++..|+.-|++++|+.+..++
T Consensus       370 ------------------------------------------------k----------~~~ah~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  370 ------------------------------------------------K----------TLEAHEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             ------------------------------------------------e----------ccCCCcceeEEEecCCCCceE
Confidence                                                            2          566888889999999999999


Q ss_pred             EEEecCceeecC
Q psy8448         471 GTYSEDGLLRFS  482 (482)
Q Consensus       471 ~s~~~Dg~i~iW  482 (482)
                      +||+-|-++++|
T Consensus       392 vTGsVdqt~Kvw  403 (406)
T KOG0295|consen  392 VTGSVDQTVKVW  403 (406)
T ss_pred             Eeccccceeeee
Confidence            999999999998

>KOG0273|consensus

Probab=100.00  E-value=6e-39  Score=277.04  Aligned_cols=276  Identities=22%  Similarity=0.375  Sum_probs=243.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      +..|++++|+.+|.+||+|+.||.++||+.. |.+..++.        .|.++|.++.|+..|.||++++.|+++.+||.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~--------~HkgPI~slKWnk~G~yilS~~vD~ttilwd~  305 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLG--------QHKGPIFSLKWNKKGTYILSGGVDGTTILWDA  305 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhh--------ccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence            4679999999999999999999999999964 44444433        35899999999999999999999999999999


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcE
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV  259 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i  259 (482)
                      .+++..+.+ ..|..+...+.|-.+ ..+++++.|+.|+++.+....++.++.+|.++|.+|.|+|.+.+|++++.|+++
T Consensus       306 ~~g~~~q~f-~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tl  383 (524)
T KOG0273|consen  306 HTGTVKQQF-EFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTL  383 (524)
T ss_pred             cCceEEEee-eeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCee
Confidence            999998888 578877788899754 568999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCceeeeeeccCCCccceeEEEEcCCC--------CCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEE
Q psy8448         260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN--------TEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLC  330 (482)
Q Consensus       260 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--------~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~  330 (482)
                      +||.+....+...+.   .|...|..+.|+|.|        +..+++++.|++|++||+ .+.++..+..|   ..+|.+
T Consensus       384 kiWs~~~~~~~~~l~---~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH---~~pVys  457 (524)
T KOG0273|consen  384 KIWSMGQSNSVHDLQ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH---QEPVYS  457 (524)
T ss_pred             EeeecCCCcchhhhh---hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC---CCceEE
Confidence            999999888887777   899999999999976        357899999999999999 79999998876   789999


Q ss_pred             EEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCc
Q psy8448         331 CTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPE  410 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  410 (482)
                      ++|+|+|+++++|+.||.|.                  +|+.+++                               ++  
T Consensus       458 vafS~~g~ylAsGs~dg~V~------------------iws~~~~-------------------------------~l--  486 (524)
T KOG0273|consen  458 VAFSPNGRYLASGSLDGCVH------------------IWSTKTG-------------------------------KL--  486 (524)
T ss_pred             EEecCCCcEEEecCCCCeeE------------------eccccch-------------------------------he--
Confidence            99999999999999999999                  6777777                               33  


Q ss_pred             hhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeec
Q psy8448         411 KKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRF  481 (482)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~i  481 (482)
                                                 ..          .+ ...+.|..+.|+.+|..|..+-.||.+++
T Consensus       487 ---------------------------~~----------s~-~~~~~Ifel~Wn~~G~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  487 ---------------------------VK----------SY-QGTGGIFELCWNAAGDKLGACASDGSVCV  519 (524)
T ss_pred             ---------------------------eE----------ee-cCCCeEEEEEEcCCCCEEEEEecCCCceE
Confidence                                       22          23 33455999999999999998888998875

>KOG0273|consensus

Probab=100.00  E-value=2.7e-39  Score=279.21  Aligned_cols=287  Identities=21%  Similarity=0.338  Sum_probs=244.9

Q ss_pred             CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCC--ceeecccccccc----ccccccccEEEEEEcCCCCEEEEEeC
Q psy8448          98 GSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTG--KIRKDLKYQAQD----NFMLMEEAVMSLAYSRDSEMLASGSQ  170 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~----~~~~h~~~i~~l~~~~~~~~l~~~~~  170 (482)
                      .|+.+|.+.+|+|-.. .|++|+.|-..++|++...  ............    .-......|++++|+.+|..||+|+.
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            4999999999999555 8999999999999998751  111111111100    11112468999999999999999999


Q ss_pred             CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448         171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  250 (482)
                      ||.+++|+. .|..+..+ ..|.++|.++.|+..|.+|++++.|+++.+||..+++..+.+..|..+-..+.|-.+ ..+
T Consensus       256 ~G~~riw~~-~G~l~~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F  332 (524)
T KOG0273|consen  256 DGEARIWNK-DGNLISTL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEF  332 (524)
T ss_pred             CcEEEEEec-Cchhhhhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceE
Confidence            999999995 57777777 789999999999999999999999999999999999999999989988788999755 569


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448         251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~  329 (482)
                      ++.+.|+.|+++.+....++.++.   +|.++|.++.|+|.+ .+|++++.|++++||.+ ++.....+..|   ...|.
T Consensus       333 ~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~H---skei~  405 (524)
T KOG0273|consen  333 ATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAH---SKEIY  405 (524)
T ss_pred             eecCCCceEEEEEecCCCcceeee---cccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhh---cccee
Confidence            999999999999999999999998   899999999999999 89999999999999998 67777777665   77899


Q ss_pred             EEEEcCCC---------CEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchh
Q psy8448         330 CCTTSPRG---------EWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVL  400 (482)
Q Consensus       330 ~~~~~~~g---------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (482)
                      .+.|+|+|         ..+++++.|++++                  +|++..|                         
T Consensus       406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~------------------lwdv~~g-------------------------  442 (524)
T KOG0273|consen  406 TIKWSPTGPVTSNPNMNLMLASASFDSTVK------------------LWDVESG-------------------------  442 (524)
T ss_pred             eEeecCCCCccCCCcCCceEEEeecCCeEE------------------EEEccCC-------------------------
Confidence            99999975         4789999999999                  6677666                         


Q ss_pred             ccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceee
Q psy8448         401 KSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLR  480 (482)
Q Consensus       401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~  480 (482)
                                                                   .|++++..|..+|.+++|+|+|++||+|+.||.|.
T Consensus       443 ---------------------------------------------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~  477 (524)
T KOG0273|consen  443 ---------------------------------------------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVH  477 (524)
T ss_pred             ---------------------------------------------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence                                                         23337789999999999999999999999999999


Q ss_pred             cC
Q psy8448         481 FS  482 (482)
Q Consensus       481 iW  482 (482)
                      ||
T Consensus       478 iw  479 (524)
T KOG0273|consen  478 IW  479 (524)
T ss_pred             ec
Confidence            99

>KOG0286|consensus

Probab=100.00  E-value=7.4e-39  Score=260.32  Aligned_cols=265  Identities=18%  Similarity=0.309  Sum_probs=233.8

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      +|...+|+.........+.     -....|..++|+|.|+++|+|+-|+...||++.+.+....  ......+.+|++.+
T Consensus        76 DGklIvWDs~TtnK~haip-----l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~--~~v~r~l~gHtgyl  148 (343)
T KOG0286|consen   76 DGKLIVWDSFTTNKVHAIP-----LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN--VRVSRELAGHTGYL  148 (343)
T ss_pred             CCeEEEEEcccccceeEEe-----cCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc--ceeeeeecCcccee
Confidence            8888999975544332222     4467899999999999999999999999999986532211  22334577899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  232 (482)
                      .|+.|-+|+ .|++++.|.++.+||+++++....| .+|.+.|.+++++| +++.+++|+-|+..++||++.+.++++|.
T Consensus       149 ScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~  226 (343)
T KOG0286|consen  149 SCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE  226 (343)
T ss_pred             EEEEEcCCC-ceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec
Confidence            999999854 6999999999999999999999999 79999999999999 89999999999999999999999999999


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C
Q psy8448         233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q  311 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~  311 (482)
                      +|...|++++|.|+|.-+++|+.|++.++||++..+.+..+... ....+|++++|+..| ++|++|..|.++.+||. .
T Consensus       227 ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk  304 (343)
T KOG0286|consen  227 GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLK  304 (343)
T ss_pred             ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCCceeEEEcccc-cEEEeeecCCceeEeeccc
Confidence            99999999999999999999999999999999999888887632 445789999999999 89999999999999999 7


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      ++.+..+.+|   ...|.++..+|||.-|++|+.|..++||
T Consensus       305 ~e~vg~L~GH---eNRvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  305 GERVGVLAGH---ENRVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             cceEEEeecc---CCeeEEEEECCCCcEEEecchhHheeec
Confidence            8888888866   8899999999999999999999999977

>KOG0266|consensus

Probab=100.00  E-value=6.9e-38  Score=295.72  Aligned_cols=292  Identities=29%  Similarity=0.501  Sum_probs=250.1

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      .+...|...|.|+.|+++|+.+++++.|+.+++|+..+.+.      .....+.+|...|..++|+|+++++++++.|++
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~t  226 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKT  226 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecCCce
Confidence            33334588999999999999999999999999999966552      112223567899999999999999999999999


Q ss_pred             EEEEEc-CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         174 VKIWKI-ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       174 i~iwd~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      |++||+ ..+..++.+ .+|...|++++|+|+++++++|+.|++|++||+++++++..+.+|.+.|++++|++++++|++
T Consensus       227 iriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s  305 (456)
T KOG0266|consen  227 LRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS  305 (456)
T ss_pred             EEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence            999999 445777888 699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCc--eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448         253 ASSDGTVKMWNLKTTE--CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~  329 (482)
                      ++.|+.|++||+.++.  +...+....... +++++.|+|++ .++++++.|+.+++||+ .+..+..+..+......+.
T Consensus       306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~  383 (456)
T KOG0266|consen  306 ASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF  383 (456)
T ss_pred             cCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence            9999999999999998  455555322223 69999999999 89999999999999999 4777777777653223555


Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCC
Q psy8448         330 CCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLP  409 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  409 (482)
                      +...++.+.++++|+.|+.|+                  +|+..++                               .. 
T Consensus       384 ~~~~~~~~~~i~sg~~d~~v~------------------~~~~~s~-------------------------------~~-  413 (456)
T KOG0266|consen  384 SPTLSTGGKLIYSGSEDGSVY------------------VWDSSSG-------------------------------GI-  413 (456)
T ss_pred             cccccCCCCeEEEEeCCceEE------------------EEeCCcc-------------------------------ch-
Confidence            666788999999999999999                  6666665                               22 


Q ss_pred             chhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceec-ccceeeccccCCcceEEEEe--cCceeecC
Q psy8448         410 EKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVH-EKLVIGLTHHPHQNLLGTYS--EDGLLRFS  482 (482)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~~--~Dg~i~iW  482 (482)
                                                  +.          .+.+| ...+..++++|..+++++++  .|+.|++|
T Consensus       414 ----------------------------~~----------~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w  451 (456)
T KOG0266|consen  414 ----------------------------LQ----------RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW  451 (456)
T ss_pred             ----------------------------hh----------hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence                                        33          67788 88899999999999999998  79999998

>KOG0284|consensus

Probab=100.00  E-value=2e-40  Score=281.19  Aligned_cols=267  Identities=20%  Similarity=0.346  Sum_probs=233.6

Q ss_pred             ccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          72 LFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      ..+|...+|+...-.     ...++..|.++|+++.|+++|.++++|+.+|.|++|+.+-.... .+..+       |..
T Consensus       115 s~SGEFtLWNg~~fn-----FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk-~~~ah-------h~e  181 (464)
T KOG0284|consen  115 SQSGEFTLWNGTSFN-----FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK-IIQAH-------HAE  181 (464)
T ss_pred             cccccEEEecCceee-----HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH-HhhHh-------hhh
Confidence            347778888763222     22455699999999999999999999999999999997644322 22222       458


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF  231 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  231 (482)
                      .|++++|+|+...+++|+.||+|+|||....+....+ .+|.-.|.+++|+|.-..|++++.|..|++||.++++++.++
T Consensus       182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl  260 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL  260 (464)
T ss_pred             hhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence            9999999999999999999999999999988888888 799999999999999999999999999999999999999999


Q ss_pred             eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         232 RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       232 ~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      .+|+..|..+.|+|++++|++++.|..+++||+++.+.+..++   +|...+++++|+|-...+|.+|+.||.|..|.+.
T Consensus       261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceeeccCCCceEEEecc
Confidence            9999999999999999999999999999999999888888887   9999999999999998999999999999999995


Q ss_pred             -CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhh
Q psy8448         312 -GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       312 -~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                       .+++..+...  |...|++++|+|-|..|++|+.|.++++|.-...
T Consensus       338 ~~~p~~~i~~A--Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  338 LEEPLGEIPPA--HDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             ccccccCCCcc--cccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence             5555555433  4889999999999999999999999999865533

>KOG0282|consensus

Probab=100.00  E-value=9.1e-40  Score=283.16  Aligned_cols=288  Identities=23%  Similarity=0.379  Sum_probs=246.5

Q ss_pred             eeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCC-CceeeccccccccccccccccEEEEEEcCCCCEEEEEeC
Q psy8448          93 KQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ  170 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~  170 (482)
                      .+...||+..|+++.|.| .+.+|++++.|+.|+||++.. ++++.        .+.+|..+|..++|+++|..+++++.
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr--------tf~gH~k~Vrd~~~s~~g~~fLS~sf  278 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR--------TFKGHRKPVRDASFNNCGTSFLSASF  278 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh--------hhhcchhhhhhhhccccCCeeeeeec
Confidence            345569999999999999 899999999999999999986 44444        44557899999999999999999999


Q ss_pred             CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      |+.+++||+++|+++..+.  ....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++++..|-+.|..+.|-++|+.
T Consensus       279 D~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r  356 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR  356 (503)
T ss_pred             ceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce
Confidence            9999999999999999985  45568999999988 78899999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC----CcEEEEecCCcccC
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ----GQIVRSLSSGKREG  325 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~  325 (482)
                      +++.+.|+.++||+.+.+-.+.....  .......++..+|++ ..+++-+.|+.|.++...    ...-+.+.++. ..
T Consensus       357 FissSDdks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-va  432 (503)
T KOG0282|consen  357 FISSSDDKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-VA  432 (503)
T ss_pred             EeeeccCccEEEEEcCCCccchhhcc--hhhccCcceecCCCC-CeehhhccCceEEEEecccccccCHhhhhccee-cc
Confidence            99999999999999998876665543  334566789999999 899999999999999873    22233444443 35


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccc
Q psy8448         326 GDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQS  405 (482)
Q Consensus       326 ~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (482)
                      +.-..+.|||||.+|++|+.||.+.+||++                  +-                              
T Consensus       433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwk------------------t~------------------------------  464 (503)
T KOG0282|consen  433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWK------------------TT------------------------------  464 (503)
T ss_pred             CceeeEEEcCCCCeEEeecCCccEEEeech------------------hh------------------------------
Confidence            666789999999999999999999966543                  33                              


Q ss_pred             cCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCc-ceEEEEecCceeecC
Q psy8448         406 LKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQ-NLLGTYSEDGLLRFS  482 (482)
Q Consensus       406 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~~~Dg~i~iW  482 (482)
                       ++                             ..          .+.+|.+++..+.|+|.. ..+|||+.||.|++|
T Consensus       465 -kl-----------------------------~~----------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  465 -KL-----------------------------VS----------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             -hh-----------------------------hh----------ccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence             33                             33          778999999999999985 489999999999999

>KOG0318|consensus

Probab=100.00  E-value=2.7e-37  Score=270.38  Aligned_cols=299  Identities=18%  Similarity=0.285  Sum_probs=240.6

Q ss_pred             ccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE
Q psy8448          88 PTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS  167 (482)
Q Consensus        88 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~  167 (482)
                      |.++.... ..|..-|+|++|+|||.++|+.+.||+|.+||-.+++.+..+..     -.+|++.|.+++|+||+..+++
T Consensus       179 PFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-----~~aHkGsIfalsWsPDs~~~~T  252 (603)
T KOG0318|consen  179 PFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-----SDAHKGSIFALSWSPDSTQFLT  252 (603)
T ss_pred             Ceeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-----CCCccccEEEEEECCCCceEEE
Confidence            33443333 38899999999999999999999999999999999998776654     2358999999999999999999


Q ss_pred             EeCCCcEEEEEcCCCeEeEEeecccC--CCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC
Q psy8448         168 GSQSGKVKIWKIATGQCLRKLEKAHS--LGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA  245 (482)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~  245 (482)
                      ++.|.+++|||+.++++++++..+..  ..-..+.|-  +..|++.+.+|.|.+++...+..+..+.+|...|+++..+|
T Consensus       253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~  330 (603)
T KOG0318|consen  253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP  330 (603)
T ss_pred             ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence            99999999999999999988854333  233344554  66899999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeee-----------ec-----------------c---------------------
Q psy8448         246 DGHSVLSASSDGTVKMWNLKTTECTSTF-----------KS-----------------L---------------------  276 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~-----------------~---------------------  276 (482)
                      ++++|++|+.||.|.-||..++..-+..           ..                 .                     
T Consensus       331 d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~  410 (603)
T KOG0318|consen  331 DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKG  410 (603)
T ss_pred             CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCcee
Confidence            9999999999999999998654321110           00                 0                     


Q ss_pred             ---------------------C--------CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcC
Q psy8448         277 ---------------------G--------ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGD  327 (482)
Q Consensus       277 ---------------------~--------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  327 (482)
                                           .        .-.....+++++|++ ..+++|+.|+.+++|.+.|..+........|..+
T Consensus       411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~  489 (603)
T KOG0318|consen  411 LAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA  489 (603)
T ss_pred             EEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCC
Confidence                                 0        001123467778877 8999999999999999976554444333445899


Q ss_pred             EEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccC
Q psy8448         328 FLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLK  407 (482)
Q Consensus       328 v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (482)
                      |++++++||+.+|+++...+.+.                  +|+..+.+.                             +
T Consensus       490 iT~vaySpd~~yla~~Da~rkvv------------------~yd~~s~~~-----------------------------~  522 (603)
T KOG0318|consen  490 ITDVAYSPDGAYLAAGDASRKVV------------------LYDVASREV-----------------------------K  522 (603)
T ss_pred             ceEEEECCCCcEEEEeccCCcEE------------------EEEcccCce-----------------------------e
Confidence            99999999999999999999999                  555554410                             0


Q ss_pred             CCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         408 LPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       408 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                    ..          .+.-|+..|++++|+|+..+|||||-|-.|.||
T Consensus       523 ------------------------------~~----------~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  523 ------------------------------TN----------RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             ------------------------------cc----------eeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence                                          00          444599999999999999999999999999998

>KOG0263|consensus

Probab=100.00  E-value=2.7e-38  Score=290.20  Aligned_cols=261  Identities=25%  Similarity=0.392  Sum_probs=231.5

Q ss_pred             cccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCcee--------ecc---------------ccccc
Q psy8448          87 YPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIR--------KDL---------------KYQAQ  143 (482)
Q Consensus        87 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~--------~~~---------------~~~~~  143 (482)
                      .|.-..-++. .-...++|..|++|+.+||.|..|..|++|.+...++.        ..+               .....
T Consensus       366 lpSic~YT~~-nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~  444 (707)
T KOG0263|consen  366 LPSICMYTFH-NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS  444 (707)
T ss_pred             CCcEEEEEEE-EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence            3333343433 33467999999999999999999999999998743211        111               11122


Q ss_pred             cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC
Q psy8448         144 DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK  223 (482)
Q Consensus       144 ~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~  223 (482)
                      ..+.+|.++|....|+|+.++|++|+.|+++++|.+.+...+..+ .+|..+|..+.|+|.|-++|+++.|++-++|...
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            347899999999999999999999999999999999999999999 6999999999999999999999999999999999


Q ss_pred             CCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC
Q psy8448         224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN  303 (482)
Q Consensus       224 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  303 (482)
                      ...+++.+.+|-+.|.|+.|+|+..++++|+.|.+|++||+.+|..++.|.   +|..+|.+++|+|.| .+|++|+.|+
T Consensus       524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~---GH~~~V~al~~Sp~G-r~LaSg~ed~  599 (707)
T KOG0263|consen  524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT---GHKGPVTALAFSPCG-RYLASGDEDG  599 (707)
T ss_pred             cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec---CCCCceEEEEEcCCC-ceEeecccCC
Confidence            999999999999999999999999999999999999999999999999998   999999999999999 9999999999


Q ss_pred             eEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         304 TVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       304 ~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      .|.+||+ .+..+..+..|   .+.|.++.|+.+|..|++|+.|..|++||+..
T Consensus       600 ~I~iWDl~~~~~v~~l~~H---t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  600 LIKIWDLANGSLVKQLKGH---TGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             cEEEEEcCCCcchhhhhcc---cCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9999999 67888888776   78999999999999999999999999888764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.2e-37  Score=275.87  Aligned_cols=282  Identities=33%  Similarity=0.560  Sum_probs=244.2

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .+|.++|++++|+|++++|++++.||.|++|++.+++....+.        .|...+..+.|+|+++++++++.||.|++
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i   77 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------GHTGPVRDVAASADGTYLASGSSDKTIRL   77 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--------cCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence            3899999999999999999999999999999998876443333        34678899999999999999999999999


Q ss_pred             EEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC
Q psy8448         177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD  256 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d  256 (482)
                      ||+.+++....+ ..|...+.++.|++++.++++++.++.|.+||+++++....+..|...+.+++|+|++.++++++.+
T Consensus        78 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          78 WDLETGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             EEcCcccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence            999988777777 5788899999999998888888889999999999999888888899999999999998988888889


Q ss_pred             CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcC
Q psy8448         257 GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       257 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~  335 (482)
                      +.|++||+++++....+.   .+...+.++.|+|++ ..+++++.++.+++||+. ++.+..+..+   ...+.+++|+|
T Consensus       157 ~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~  229 (289)
T cd00200         157 GTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCLGTLRGH---ENGVNSVAFSP  229 (289)
T ss_pred             CcEEEEEccccccceeEe---cCccccceEEECCCc-CEEEEecCCCcEEEEECCCCceecchhhc---CCceEEEEEcC
Confidence            999999999888877776   777799999999998 788888889999999995 5666655443   56899999999


Q ss_pred             CCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhh
Q psy8448         336 RGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLID  415 (482)
Q Consensus       336 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  415 (482)
                      ++.++++++.||.+++|                  +..++                               ..       
T Consensus       230 ~~~~~~~~~~~~~i~i~------------------~~~~~-------------------------------~~-------  253 (289)
T cd00200         230 DGYLLASGSEDGTIRVW------------------DLRTG-------------------------------EC-------  253 (289)
T ss_pred             CCcEEEEEcCCCcEEEE------------------EcCCc-------------------------------ee-------
Confidence            99999988889999954                  44433                               11       


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         416 LYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                            ..          .+..|...|.+++|+|++++|++++.||.|++|
T Consensus       254 ----------------------~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         254 ----------------------VQ----------TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             ----------------------EE----------EccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence                                  22          455788889999999999999999999999999

>KOG0291|consensus

Probab=100.00  E-value=4.2e-37  Score=280.12  Aligned_cols=274  Identities=20%  Similarity=0.395  Sum_probs=234.3

Q ss_pred             CCCceeeccCC---ccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448          65 PPGTTIDLFRG---KAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ  141 (482)
Q Consensus        65 ~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  141 (482)
                      ..|..+++...   +..+|+...+.+-.+..     ||...++|++++|||+++|+|+.||.|+|||..++-+..++.. 
T Consensus       317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-----gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-  390 (893)
T KOG0291|consen  317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-----GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-  390 (893)
T ss_pred             ccCCEEEEcCCccceEEEEEeeccceeeecc-----ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc-
Confidence            44666666543   57788887777765554     9999999999999999999999999999999999988877765 


Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC-eEEEE
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-YVRIH  220 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~i~i~  220 (482)
                             |++.|+.+.|+..++.+++.+.||+|+.||+...+..+++..+......|++..|.|..+++|+.|. .|.+|
T Consensus       391 -------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvW  463 (893)
T KOG0291|consen  391 -------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVW  463 (893)
T ss_pred             -------CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEE
Confidence                   4789999999999999999999999999999999999999777777789999999999999998887 69999


Q ss_pred             eCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448         221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       221 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                      ++++|+.+..+.+|.++|.+++|+|++..|++++.|.+|++||+-.. ..+.++    .....+..++|.|+| +.++++
T Consensus       464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~vsfrPdG-~elaVa  538 (893)
T KOG0291|consen  464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAVSFRPDG-KELAVA  538 (893)
T ss_pred             EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE----eeccceeEEEEcCCC-CeEEEE
Confidence            99999999999999999999999999999999999999999998654 334455    456789999999999 899999


Q ss_pred             eCCCeEEEEEc-CCcEEEEecC-----------------CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         300 NKTNTVVIMNM-QGQIVRSLSS-----------------GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       300 ~~d~~i~i~d~-~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      +.||.|.+||. .+..+..+.+                 .......++.+++++||..|++|+....|.||+++.
T Consensus       539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence            99999999998 3433322221                 111246788999999999999999999999877663

>KOG0296|consensus

Probab=100.00  E-value=1.4e-37  Score=260.42  Aligned_cols=303  Identities=19%  Similarity=0.283  Sum_probs=255.9

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      ++...+|+......+..+.     +|++.|+|+.||.+|.+||||+.+|.|+||+..++.....+...        -+.+
T Consensus        85 DD~AflW~~~~ge~~~elt-----gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e--------~~di  151 (399)
T KOG0296|consen   85 DDLAFLWDISTGEFAGELT-----GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE--------VEDI  151 (399)
T ss_pred             CceEEEEEccCCcceeEec-----CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc--------cCce
Confidence            4456677777666554444     99999999999999999999999999999999999887776533        3679


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  233 (482)
                      .-|.|+|.+..|++|+.||.+.+|.+.++...+.+ .+|..++++=.|.|+|+.++++..||+|++|++.+++++..+..
T Consensus       152 eWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~  230 (399)
T KOG0296|consen  152 EWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQ  230 (399)
T ss_pred             EEEEecccccEEEeecCCCcEEEEECCCcceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecc
Confidence            99999999999999999999999999887666666 78999999999999999999999999999999999999888763


Q ss_pred             -cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeecc-----CCCccceeEEEEcCCCC--CEEEEEeCCCeE
Q psy8448         234 -HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSL-----GASDIAVNSIHLLPKNT--EHFVVCNKTNTV  305 (482)
Q Consensus       234 -~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~--~~l~~~~~d~~i  305 (482)
                       ......++.++..+..++.|+.++.+++-+..+++.+......     ..+...+.++.+.|...  .++++|+.||+|
T Consensus       231 ~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i  310 (399)
T KOG0296|consen  231 AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTI  310 (399)
T ss_pred             cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceE
Confidence             3445788999999999999999999999999888877665520     12344455555555432  578899999999


Q ss_pred             EEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccc
Q psy8448         306 VIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVD  385 (482)
Q Consensus       306 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (482)
                      .|||+....++..-.+   ...|+.+.|-+ ..+|++++.+|.|+                  .||.++|          
T Consensus       311 ~iyD~a~~~~R~~c~h---e~~V~~l~w~~-t~~l~t~c~~g~v~------------------~wDaRtG----------  358 (399)
T KOG0296|consen  311 AIYDLAASTLRHICEH---EDGVTKLKWLN-TDYLLTACANGKVR------------------QWDARTG----------  358 (399)
T ss_pred             EEEecccchhheeccC---CCceEEEEEcC-cchheeeccCceEE------------------eeecccc----------
Confidence            9999976666666555   67799999998 78999999999999                  8889999          


Q ss_pred             cceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccC
Q psy8448         386 GFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHP  465 (482)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  465 (482)
                                           .+                             ..          ++.||...|.+++++|
T Consensus       359 ---------------------~l-----------------------------~~----------~y~GH~~~Il~f~ls~  378 (399)
T KOG0296|consen  359 ---------------------QL-----------------------------KF----------TYTGHQMGILDFALSP  378 (399)
T ss_pred             ---------------------ce-----------------------------EE----------EEecCchheeEEEEcC
Confidence                                 55                             55          8899999999999999


Q ss_pred             CcceEEEEecCceeecC
Q psy8448         466 HQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       466 ~~~~l~s~~~Dg~i~iW  482 (482)
                      ++++++|+|.|++.+||
T Consensus       379 ~~~~vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  379 QKRLVVTVSDDNTALVF  395 (399)
T ss_pred             CCcEEEEecCCCeEEEE
Confidence            99999999999998875

>KOG0316|consensus

Probab=100.00  E-value=3.1e-37  Score=243.28  Aligned_cols=242  Identities=21%  Similarity=0.364  Sum_probs=216.2

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      .++..|.++|..+.|+-||+|.++++.|.+|++|+...+.+++++..+        ..+|..++.+.|+..|++|+.|..
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh--------G~EVlD~~~s~Dnskf~s~GgDk~   82 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH--------GHEVLDAALSSDNSKFASCGGDKA   82 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC--------CceeeeccccccccccccCCCCce
Confidence            455689999999999999999999999999999999999988877655        578999999999999999999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC--ceEEEeeccccceeEEEEcCCCCEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG--KMLKEFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      +.+||+.+|+..+++ .+|.+.|+.++|+.+...+++|+.|..+++||.++.  ++++.+......|.++..+  +..|+
T Consensus        83 v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv  159 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV  159 (307)
T ss_pred             EEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence            999999999999999 799999999999999999999999999999999865  6788888888899999885  56799


Q ss_pred             EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEE
Q psy8448         252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLC  330 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~  330 (482)
                      +|+.||+++.||++.|+....+     ...+|+++.|++++ +..++++.|+++++.|. +|+.+..+.++.. ...-..
T Consensus       160 aGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn-~eykld  232 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKN-MEYKLD  232 (307)
T ss_pred             eeccCCcEEEEEeecceeehhh-----cCCcceeEEecCCC-CEEEEeeccceeeecccchhHHHHHhccccc-ceeeee
Confidence            9999999999999999866554     35689999999999 89999999999999999 7888888887765 334456


Q ss_pred             EEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         331 CTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ++++.....+++|++||.+++||
T Consensus       233 c~l~qsdthV~sgSEDG~Vy~wd  255 (307)
T KOG0316|consen  233 CCLNQSDTHVFSGSEDGKVYFWD  255 (307)
T ss_pred             eeecccceeEEeccCCceEEEEE
Confidence            77888889999999999999444

>KOG0291|consensus

Probab=100.00  E-value=1e-35  Score=271.23  Aligned_cols=361  Identities=14%  Similarity=0.166  Sum_probs=282.9

Q ss_pred             CCCCCCceeeccCCc-ccccccccc---ccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeec
Q psy8448          62 GLLPPGTTIDLFRGK-AAMKDQEEE---KYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD  137 (482)
Q Consensus        62 ~~~~~g~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~  137 (482)
                      .+.|+|..+++..++ +.+|.....   .++....+....||-..|.++.|+.|.++|++|+.|-++++|.++..+... 
T Consensus       103 ~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-  181 (893)
T KOG0291|consen  103 KFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-  181 (893)
T ss_pred             EECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-
Confidence            345888888776665 456664332   355555566667999999999999999999999999999999998765422 


Q ss_pred             cccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----------------------CeE-----e----
Q psy8448         138 LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT-----------------------GQC-----L----  185 (482)
Q Consensus       138 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-----------------------~~~-----~----  185 (482)
                           ...+.+|.+.|.+.-|..+...+++.+.||.+.+|....                       ++.     .    
T Consensus       182 -----~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~  256 (893)
T KOG0291|consen  182 -----TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT  256 (893)
T ss_pred             -----eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE
Confidence                 234556899999999999999999999999999998751                       111     0    


Q ss_pred             -EEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC-CcEEEEE
Q psy8448         186 -RKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD-GTVKMWN  263 (482)
Q Consensus       186 -~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-g~i~i~d  263 (482)
                       +.+.......+++.+|++....|++|-..|...+|++.....++.+.-...+|..++|+..|.+|+.|+.. |.+.||+
T Consensus       257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe  336 (893)
T KOG0291|consen  257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE  336 (893)
T ss_pred             EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence             11112334779999999999999999999999999999999999998778899999999999999998764 8999999


Q ss_pred             CCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEE
Q psy8448         264 LKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYC  342 (482)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~  342 (482)
                      ..+..-+...+   +|-..+++++++||| .++++|+.||.|++||. .|-+..++..|   ...|+.+.|+..|+.|++
T Consensus       337 WqsEsYVlKQQ---gH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteH---ts~Vt~v~f~~~g~~lls  409 (893)
T KOG0291|consen  337 WQSESYVLKQQ---GHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEH---TSGVTAVQFTARGNVLLS  409 (893)
T ss_pred             eeccceeeecc---ccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccC---CCceEEEEEEecCCEEEE
Confidence            99877666665   899999999999999 89999999999999999 68899999887   788999999999999999


Q ss_pred             EeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccc-eeccCCCcccchh--ccccccCCCchhhhhhhHH
Q psy8448         343 VGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGF-IADINNGHWDTVL--KSVQSLKLPEKKLIDLYEQ  419 (482)
Q Consensus       343 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~  419 (482)
                      .+-||+++.||+.                  .....+++.+|... ..+++.......+  ...+.+.+           
T Consensus       410 sSLDGtVRAwDlk------------------RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~I-----------  460 (893)
T KOG0291|consen  410 SSLDGTVRAWDLK------------------RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI-----------  460 (893)
T ss_pred             eecCCeEEeeeec------------------ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEE-----------
Confidence            9999999966655                  33333333322211 1111111000000  00011122           


Q ss_pred             HHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         420 VVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                        ..|.-.+|+.+..+.||+++|.+++|+|+++.|||+|.|.+||+|
T Consensus       461 ------------------fvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  461 ------------------FVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW  505 (893)
T ss_pred             ------------------EEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence                              345666778888999999999999999999999999999999999

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.2e-35  Score=301.59  Aligned_cols=247  Identities=17%  Similarity=0.234  Sum_probs=203.0

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVK  175 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~  175 (482)
                      ..|.+.|.+++|+|+|++||+|+.|+.|+||++............+... ..+...+.+++|+| ++.+|++++.||.|+
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVE-LASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEE-ecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            3699999999999999999999999999999976421100000000001 11246799999998 578999999999999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEc-CCCCEEEEE
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFT-ADGHSVLSA  253 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~~~  253 (482)
                      +||+.+++.+..+ ..|...|.+++|+| ++.+|++|+.|+.|++||+++++.+..+..+ ..+.++.|+ +++.+|++|
T Consensus       559 lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        559 VWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             EEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence            9999999888888 68999999999997 7889999999999999999999988888754 679999995 578999999


Q ss_pred             eCCCcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-------CcEEEEecCCcccC
Q psy8448         254 SSDGTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-------GQIVRSLSSGKREG  325 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~  325 (482)
                      +.||.|++||+++.+ ....+.   +|...|.++.|. ++ ..+++++.|+.|++||+.       ...+..+..+   .
T Consensus       637 s~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh---~  708 (793)
T PLN00181        637 SADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH---T  708 (793)
T ss_pred             eCCCeEEEEECCCCCccceEec---CCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC---C
Confidence            999999999998765 344444   788999999997 44 689999999999999984       2455566554   6


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         326 GDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       326 ~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ..+.+++|+|++.+|++|+.|+.+++|+.
T Consensus       709 ~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        709 NVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             CCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            77889999999999999999999997764

>KOG0643|consensus

Probab=100.00  E-value=2.4e-35  Score=236.93  Aligned_cols=295  Identities=16%  Similarity=0.266  Sum_probs=240.6

Q ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448          95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      ++.||..+++.+.|+.+|.+|.+++.|.+..+|-..+|+.+-++        .+|++.|.|++...+.+++++|+.|.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty--------~GHtGavW~~Did~~s~~liTGSAD~t~   76 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY--------DGHTGAVWCCDIDWDSKHLITGSADQTA   76 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee--------cCCCceEEEEEecCCcceeeecccccee
Confidence            34599999999999999999999999999999988788766554        4568999999999999999999999999


Q ss_pred             EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-----CeEEEEeCC-------CCceEEEeeccccceeEEE
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-----TYVRIHGLK-------SGKMLKEFRGHSSFVNDIT  242 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~-------~~~~~~~~~~~~~~i~~l~  242 (482)
                      ++||+++|+++..+.  ...+|..+.|+++|.+++....+     +.|.++|++       ..++...+..+.+.++.+-
T Consensus        77 kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~  154 (327)
T KOG0643|consen   77 KLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL  154 (327)
T ss_pred             EEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee
Confidence            999999999999984  67789999999999888776543     579999998       4556777888889999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCcee-eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecC
Q psy8448         243 FTADGHSVLSASSDGTVKMWNLKTTECT-STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSS  320 (482)
Q Consensus       243 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~  320 (482)
                      |.|-++.|++|..||.|.+||.++++.. ...+   .|...|+.++++++. .++++++.|.+-++||. +-..++++..
T Consensus       155 Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~---~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~t  230 (327)
T KOG0643|consen  155 WGPLGETIIAGHEDGSISIYDARTGKELVDSDE---EHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTT  230 (327)
T ss_pred             ecccCCEEEEecCCCcEEEEEcccCceeeechh---hhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeee
Confidence            9999999999999999999999998543 3333   788899999999999 89999999999999999 5666777765


Q ss_pred             CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchh
Q psy8448         321 GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVL  400 (482)
Q Consensus       321 ~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (482)
                          ..++++.+++|...+++.|+.....-+=                --..+.|                         
T Consensus       231 ----e~PvN~aaisP~~d~VilgGGqeA~dVT----------------TT~~r~G-------------------------  265 (327)
T KOG0643|consen  231 ----ERPVNTAAISPLLDHVILGGGQEAMDVT----------------TTSTRAG-------------------------  265 (327)
T ss_pred             ----cccccceecccccceEEecCCceeeeee----------------eeccccc-------------------------
Confidence                6789999999998888877654332200                1111112                         


Q ss_pred             ccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceee
Q psy8448         401 KSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLR  480 (482)
Q Consensus       401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~  480 (482)
                            +...+..-.+.                           -+++..+++|-++|++++|+|+|+..+||++||.||
T Consensus       266 ------KFEArFyh~i~---------------------------eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR  312 (327)
T KOG0643|consen  266 ------KFEARFYHLIF---------------------------EEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR  312 (327)
T ss_pred             ------chhhhHHHHHH---------------------------HHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence                  11111111111                           122337889999999999999999999999999999


Q ss_pred             c
Q psy8448         481 F  481 (482)
Q Consensus       481 i  481 (482)
                      +
T Consensus       313 ~  313 (327)
T KOG0643|consen  313 L  313 (327)
T ss_pred             E
Confidence            7

>KOG0315|consensus

Probab=100.00  E-value=7.9e-36  Score=237.25  Aligned_cols=262  Identities=18%  Similarity=0.316  Sum_probs=215.6

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      ++-.+++|......    ..+++. ...+.|+.+...|+++.||+++. ..|++||++++..      .+...+.+|+..
T Consensus        18 YDhTIRfWqa~tG~----C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np------~Pv~t~e~h~kN   85 (311)
T KOG0315|consen   18 YDHTIRFWQALTGI----CSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP------NPVATFEGHTKN   85 (311)
T ss_pred             CcceeeeeehhcCe----EEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC------CceeEEeccCCc
Confidence            35556667654433    333343 44678999999999999999985 5699999998763      244456668899


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  232 (482)
                      |+++.|..+|+.+++|+.||+++|||++...+.+.+  .|.++|+++..+|+...|++|..+|.|++||+.+..+...+.
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence            999999999999999999999999999997777776  477999999999999999999999999999999887766654


Q ss_pred             -ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee---eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448         233 -GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF---KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM  308 (482)
Q Consensus       233 -~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~  308 (482)
                       ....+|.++...|||.+++.+...|..++|++-+.+....+   ..+..|+..+..+.++|++ ++|++++.|.+++||
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iw  242 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIW  242 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEE
Confidence             34568999999999999999999999999999775433222   2233889999999999999 999999999999999


Q ss_pred             EcCCc--EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         309 NMQGQ--IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       309 d~~~~--~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      +.++-  .-..+..   +...+..++||.||+||++|+.|+..++|
T Consensus       243 n~~~~~kle~~l~g---h~rWvWdc~FS~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  243 NTDDFFKLELVLTG---HQRWVWDCAFSADGEYLVTASSDHTARLW  285 (311)
T ss_pred             ecCCceeeEEEeec---CCceEEeeeeccCccEEEecCCCCceeec
Confidence            99655  2223333   36789999999999999999999999943

>KOG0263|consensus

Probab=100.00  E-value=1.4e-36  Score=279.01  Aligned_cols=208  Identities=21%  Similarity=0.390  Sum_probs=195.9

Q ss_pred             cceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC
Q psy8448          91 LSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ  170 (482)
Q Consensus        91 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~  170 (482)
                      .....+.||.++|..+.|+|+.++|++++.|++|++|.+.+......+.        +|..+|..+.|+|.|-|+|+++.
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~--------GH~~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK--------GHLAPVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec--------CCCcceeeEEecCCceEEEecCC
Confidence            3344577999999999999999999999999999999999887766555        35789999999999999999999


Q ss_pred             CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448         171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  250 (482)
                      |++.++|......+++.+ .+|.+.|.|+.|+|+..++++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|
T Consensus       514 D~tArLWs~d~~~PlRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  514 DQTARLWSTDHNKPLRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL  592 (707)
T ss_pred             CceeeeeecccCCchhhh-cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence            999999999998898888 7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      ++|+.||.|.+||+.+++.+..+.   +|.+.|.++.|+.+| .+|++++.|++|++||+.
T Consensus       593 aSg~ed~~I~iWDl~~~~~v~~l~---~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  593 ASGDEDGLIKIWDLANGSLVKQLK---GHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLT  649 (707)
T ss_pred             eecccCCcEEEEEcCCCcchhhhh---cccCceeEEEEecCC-CEEEecCCCCeEEEEEch
Confidence            999999999999999999998888   889999999999999 899999999999999983

>KOG0319|consensus

Probab=100.00  E-value=9.4e-36  Score=270.94  Aligned_cols=338  Identities=21%  Similarity=0.276  Sum_probs=267.6

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDG--QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      ++.+.+|+....     ...+.+.||.+.|.++.|+|+-  ..|++|..|+++++||++++..       ....+..|.+
T Consensus       126 D~~v~VWdi~~~-----~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-------cl~~~~~H~S  193 (775)
T KOG0319|consen  126 DGRVKVWDIKNG-----YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-------CLHTMILHKS  193 (775)
T ss_pred             cceEEEEEeeCC-----EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-------HHHHHHhhhh
Confidence            667888886544     4455566999999999999965  4589999999999999997654       2233445788


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe-------------------------------------------
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL-------------------------------------------  188 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------------------------------  188 (482)
                      .|++++|++++..+++++.|..+.+||+.+-+....+                                           
T Consensus       194 ~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~  273 (775)
T KOG0319|consen  194 AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCV  273 (775)
T ss_pred             heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhh
Confidence            9999999999999999999999999986431110000                                           


Q ss_pred             --------------------------------------------------------------------------------
Q psy8448         189 --------------------------------------------------------------------------------  188 (482)
Q Consensus       189 --------------------------------------------------------------------------------  188 (482)
                                                                                                      
T Consensus       274 ~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~  353 (775)
T KOG0319|consen  274 YKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL  353 (775)
T ss_pred             hhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEec
Confidence                                                                                            


Q ss_pred             -------ecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc----eEEEeeccccceeEEEEcCCC-CEEEEEeCC
Q psy8448         189 -------EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK----MLKEFRGHSSFVNDITFTADG-HSVLSASSD  256 (482)
Q Consensus       189 -------~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~d  256 (482)
                             ..+|...|.++....+|.+|++|+.|.++++|.++++.    ++....+|.+.|.+++++..+ ..|++++.|
T Consensus       354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D  433 (775)
T KOG0319|consen  354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD  433 (775)
T ss_pred             CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence                   02677777788755677799999999999999874443    455667899999999997644 678999999


Q ss_pred             CcEEEEECCCCceeee---e---eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448         257 GTVKMWNLKTTECTST---F---KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       257 g~i~i~d~~~~~~~~~---~---~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~  329 (482)
                      +++++|++...+....   +   .....|+..|++++++|+. .++++|+.|.+.++|++ +...+..+.+|   ...+.
T Consensus       434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH---~RGvw  509 (775)
T KOG0319|consen  434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGH---TRGVW  509 (775)
T ss_pred             ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCC---ccceE
Confidence            9999999986322111   1   0122789999999999998 89999999999999999 56777777776   77899


Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccccccccee---------ccCCCcccchh
Q psy8448         330 CCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIA---------DINNGHWDTVL  400 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  400 (482)
                      ++.|+|..+.++++|.|++|+                  +|.+.+..++.++.+|...+.         .+.+++.++.+
T Consensus       510 ~V~Fs~~dq~laT~SgD~TvK------------------IW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGli  571 (775)
T KOG0319|consen  510 CVSFSKNDQLLATCSGDKTVK------------------IWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLI  571 (775)
T ss_pred             EEEeccccceeEeccCCceEE------------------EEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcE
Confidence            999999999999999999999                  777778888888888877765         34455555555


Q ss_pred             ccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceee
Q psy8448         401 KSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLR  480 (482)
Q Consensus       401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~  480 (482)
                      +.                                     |+-.+..|..++.+|++.|.+++.+|.+.+++||+.||.|.
T Consensus       572 Kl-------------------------------------Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~  614 (775)
T KOG0319|consen  572 KL-------------------------------------WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRII  614 (775)
T ss_pred             EE-------------------------------------EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEE
Confidence            44                                     44456677779999999999999999999999999999999


Q ss_pred             cC
Q psy8448         481 FS  482 (482)
Q Consensus       481 iW  482 (482)
                      +|
T Consensus       615 ~w  616 (775)
T KOG0319|consen  615 FW  616 (775)
T ss_pred             Ee
Confidence            98

>KOG0278|consensus

Probab=100.00  E-value=7.7e-37  Score=243.16  Aligned_cols=279  Identities=24%  Similarity=0.347  Sum_probs=243.8

Q ss_pred             cCCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          97 FGSKSHVECARFSP---DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        97 ~~h~~~v~~~~~s~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      .||+.+|-.++|||   +|-+|++++.||.-.+-+-++|.-+.+        +.+|.+.|.+...+.+....++++.|-+
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt--------feghkgavw~~~l~~na~~aasaaadft   82 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT--------FEGHKGAVWSATLNKNATRAASAAADFT   82 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe--------eeccCcceeeeecCchhhhhhhhcccch
Confidence            49999999999987   888999999999888777777665544        4556899999999998888999999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc-eEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK-MLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      -++||.-+|..+..+.  |.--|..++|+.|..+|++|+.+..++|||++..+ +..++.+|.+.|..+-|....+.|++
T Consensus        83 akvw~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS  160 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS  160 (334)
T ss_pred             hhhhhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence            9999999999999985  77779999999999999999999999999998765 56788999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEE
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCC  331 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~  331 (482)
                      .+.|++|++||.+++..++++    ..+.+|+++.++++|  .+++....+.|.+||. .-..++.+..    ...|.+.
T Consensus       161 Sadd~tVRLWD~rTgt~v~sL----~~~s~VtSlEvs~dG--~ilTia~gssV~Fwdaksf~~lKs~k~----P~nV~SA  230 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQSL----EFNSPVTSLEVSQDG--RILTIAYGSSVKFWDAKSFGLLKSYKM----PCNVESA  230 (334)
T ss_pred             eccCCceEEEEeccCcEEEEE----ecCCCCcceeeccCC--CEEEEecCceeEEeccccccceeeccC----ccccccc
Confidence            999999999999999999998    457799999999997  4666677889999999 4566666654    5678999


Q ss_pred             EEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCch
Q psy8448         332 TTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEK  411 (482)
Q Consensus       332 ~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  411 (482)
                      .++|+...+++|++|+.++                  .||..+|+.+                                 
T Consensus       231 SL~P~k~~fVaGged~~~~------------------kfDy~TgeEi---------------------------------  259 (334)
T KOG0278|consen  231 SLHPKKEFFVAGGEDFKVY------------------KFDYNTGEEI---------------------------------  259 (334)
T ss_pred             cccCCCceEEecCcceEEE------------------EEeccCCcee---------------------------------
Confidence            9999999999999999999                  7888888211                                 


Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         412 KLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                ..          ..++|.++|.++.|+|||...|+||+||+||||
T Consensus       260 --------------------------~~----------~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  260 --------------------------GS----------YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             --------------------------ee----------cccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence                                      10          236899999999999999999999999999999

>KOG0276|consensus

Probab=100.00  E-value=4.2e-35  Score=261.77  Aligned_cols=244  Identities=19%  Similarity=0.333  Sum_probs=224.8

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      .|+..|.++.|+|....++++-.+|.|.|||.++......+...        +-+|.+..|-+..+++++|+.|..|++|
T Consensus        11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~--------~~PvRa~kfiaRknWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS--------EVPVRAAKFIARKNWIVTGSDDMQIRVF   82 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec--------ccchhhheeeeccceEEEecCCceEEEE
Confidence            58899999999999999999999999999999999988887766        5789999999999999999999999999


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcC-CCCEEEEEeC
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTA-DGHSVLSASS  255 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~  255 (482)
                      +..+++.+..+ ..|...|++++.+|...++++++.|-.|++||.+.. .+.+++.+|...|.+++|+| |.+.+++++-
T Consensus        83 nynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   83 NYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             ecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            99999999999 699999999999999999999999999999999754 67889999999999999999 6788999999


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC-CCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEE
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN-TEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTT  333 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~  333 (482)
                      |++|++|.+.+..+..++.   +|...|+++.+.+.| ..++++|+.|.++++||. +..++.++.+|   ...|..+.|
T Consensus       162 DrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH---t~Nvs~v~f  235 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH---TNNVSFVFF  235 (794)
T ss_pred             cccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc---cccceEEEe
Confidence            9999999999999999988   999999999998865 358999999999999999 56777888776   778999999


Q ss_pred             cCCCCEEEEEeCCcEEEEEeehh
Q psy8448         334 SPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       334 ~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      +|.-..+++|++||+++||.-..
T Consensus       236 hp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  236 HPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             cCCCcEEEEecCCccEEEecCcc
Confidence            99999999999999999775543

>KOG0318|consensus

Probab=100.00  E-value=1.1e-33  Score=247.96  Aligned_cols=316  Identities=22%  Similarity=0.345  Sum_probs=259.7

Q ss_pred             CCCCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          63 LLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        63 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      .-|.|..+.+..|...+...-+.    .....+..+|..+++-.+|||.|-|+|+|...|.|+|||....+.+.......
T Consensus        26 ~dpkgd~ilY~nGksv~ir~i~~----~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v  101 (603)
T KOG0318|consen   26 GDPKGDNILYTNGKSVIIRNIDN----PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQV  101 (603)
T ss_pred             cCCCCCeEEEeCCCEEEEEECCC----ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeee
Confidence            34677778887777554432211    12245566999999999999999999999999999999987654333222222


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeE
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQS----GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYV  217 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i  217 (482)
                            ..++|..++|++++++|++.+..    |.+.+||  +|..+..+ .+|...|.+++|-|... ++++|+.|+.|
T Consensus       102 ------~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei-~GhSr~ins~~~KpsRPfRi~T~sdDn~v  172 (603)
T KOG0318|consen  102 ------LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEI-TGHSRRINSVDFKPSRPFRIATGSDDNTV  172 (603)
T ss_pred             ------cccccccceeCCCCcEEEEEecCccceeEEEEec--CCCcccee-eccceeEeeeeccCCCceEEEeccCCCeE
Confidence                  36899999999999999988743    4556665  67778888 79999999999999654 58999999999


Q ss_pred             EEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEE
Q psy8448         218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFV  297 (482)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~  297 (482)
                      .+|+-...+-..+++.|...|.|+.|+|||..+++++.||++.+||=.+++.+..+....+|.+.|.++.|+||+ ..++
T Consensus       173 ~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-~~~~  251 (603)
T KOG0318|consen  173 AFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-TQFL  251 (603)
T ss_pred             EEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-ceEE
Confidence            999977777778888999999999999999999999999999999999999999998777999999999999999 8999


Q ss_pred             EEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccc
Q psy8448         298 VCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGV  376 (482)
Q Consensus       298 ~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  376 (482)
                      +++.|.+++|||. .++...++.....-......+.|-  +..|++.+.+|.|.                  .++...+ 
T Consensus       252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in------------------~ln~~d~-  310 (603)
T KOG0318|consen  252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTIN------------------YLNPSDP-  310 (603)
T ss_pred             EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEE------------------EecccCC-
Confidence            9999999999999 677778777654333445566675  66899999999999                  6666655 


Q ss_pred             eeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccc
Q psy8448         377 SLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEK  456 (482)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  456 (482)
                                                    +.                             ..          .+.||..
T Consensus       311 ------------------------------~~-----------------------------~~----------~i~GHnK  321 (603)
T KOG0318|consen  311 ------------------------------SV-----------------------------LK----------VISGHNK  321 (603)
T ss_pred             ------------------------------Ch-----------------------------hh----------eeccccc
Confidence                                          22                             23          7789999


Q ss_pred             ceeeccccCCcceEEEEecCceeecC
Q psy8448         457 LVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       457 ~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      .|+++..+||+++|.||+.||.|.-|
T Consensus       322 ~ITaLtv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  322 SITALTVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             ceeEEEEcCCCCEEEeeccCceEEEE
Confidence            99999999999999999999999877

>KOG0640|consensus

Probab=100.00  E-value=9.8e-35  Score=238.31  Aligned_cols=306  Identities=19%  Similarity=0.282  Sum_probs=243.0

Q ss_pred             ccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCC----ceeeccc------cccccccccccccEEEEE
Q psy8448          88 PTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTG----KIRKDLK------YQAQDNFMLMEEAVMSLA  157 (482)
Q Consensus        88 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~------~~~~~~~~~h~~~i~~l~  157 (482)
                      |.......+..|++++.+.+|+|||.++|+|+.|-.|+|.|++.-    +......      -+....+..|.++|+++.
T Consensus       100 ~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~  179 (430)
T KOG0640|consen  100 PSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD  179 (430)
T ss_pred             CcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence            444455556699999999999999999999999999999998711    1111111      112245677899999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe---ec
Q psy8448         158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF---RG  233 (482)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~  233 (482)
                      |+|....|++++.|++|+++|+......+.+. .....+|.++.|+|.|.+|++|.....+++||+.+.++...-   ..
T Consensus       180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q  259 (430)
T KOG0640|consen  180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ  259 (430)
T ss_pred             ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence            99999999999999999999987654333221 124567999999999999999999999999999999886554   35


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CC
Q psy8448         234 HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QG  312 (482)
Q Consensus       234 ~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~  312 (482)
                      |.+.|+++.+++.+++.++++.||.|++||--+++|+.++.... ....|.+..|..++ +++++.+.|..+++|.+ ++
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCC-eEEeecCCcceeeeeeecCC
Confidence            88999999999999999999999999999999999999887532 24678888999988 89999999999999999 78


Q ss_pred             cEEEEecCCccc--CcCEEEEEEcCCCCEEEEEeC-CcEEEEEeehhhhhhhcccccceeeeecccceeeccccccccee
Q psy8448         313 QIVRSLSSGKRE--GGDFLCCTTSPRGEWIYCVGE-DMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIA  389 (482)
Q Consensus       313 ~~~~~~~~~~~~--~~~v~~~~~~~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (482)
                      +.+..+.+....  ..--+...|+....+++.-.+ .+.+.                  .|+.+++...           
T Consensus       338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slc------------------sWdaRtadr~-----------  388 (430)
T KOG0640|consen  338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLC------------------SWDARTADRV-----------  388 (430)
T ss_pred             ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCcee------------------eccccchhhh-----------
Confidence            988888764211  111245677777778776554 35566                  7887776100           


Q ss_pred             ccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcce
Q psy8448         390 DINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNL  469 (482)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  469 (482)
                                       .+                                         .-.+|.+.+..+.-||.+.-
T Consensus       389 -----------------~l-----------------------------------------~slgHn~a~R~i~HSP~~p~  410 (430)
T KOG0640|consen  389 -----------------AL-----------------------------------------LSLGHNGAVRWIVHSPVEPA  410 (430)
T ss_pred             -----------------hh-----------------------------------------cccCCCCCceEEEeCCCCCc
Confidence                             11                                         23489999999999999999


Q ss_pred             EEEEecCceeecC
Q psy8448         470 LGTYSEDGLLRFS  482 (482)
Q Consensus       470 l~s~~~Dg~i~iW  482 (482)
                      ++|||+|-++|+|
T Consensus       411 FmTcsdD~raRFW  423 (430)
T KOG0640|consen  411 FMTCSDDFRARFW  423 (430)
T ss_pred             eeeecccceeeee
Confidence            9999999999999

>KOG0276|consensus

Probab=100.00  E-value=9.2e-35  Score=259.58  Aligned_cols=284  Identities=21%  Similarity=0.305  Sum_probs=241.3

Q ss_pred             HHHHHHHhhcccceeeChhHHHHHHHhHhhhhhccCCCCCCceeeccCCccccccccccccccccceeeecCCCCcEEEE
Q psy8448          27 RRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECA  106 (482)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  106 (482)
                      |+..-.++.+..+.+.|.....                    ..++++|.+.+|+.+.......+.     -..-+|.+.
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~--------------------la~LynG~V~IWnyetqtmVksfe-----V~~~PvRa~   61 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWI--------------------LAALYNGDVQIWNYETQTMVKSFE-----VSEVPVRAA   61 (794)
T ss_pred             hHhhccCCceeeeecCCCCceE--------------------EEeeecCeeEEEecccceeeeeee-----ecccchhhh
Confidence            3334455556677777765332                    456789999999976654433332     346789999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE-e
Q psy8448         107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC-L  185 (482)
Q Consensus       107 ~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~  185 (482)
                      +|-+..+++++|+.|..|+||+.++++.+..+..        |.+-|.+++.+|...++++++.|-.|++||.+.+-. .
T Consensus        62 kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeA--------H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~  133 (794)
T KOG0276|consen   62 KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA--------HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE  133 (794)
T ss_pred             eeeeccceEEEecCCceEEEEecccceeeEEeec--------cccceeeeeecCCCCeEEecCCccEEEEeeccCceeee
Confidence            9999999999999999999999999987776654        478999999999999999999999999999987754 4


Q ss_pred             EEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC--CCCEEEEEeCCCcEEEE
Q psy8448         186 RKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA--DGHSVLSASSDGTVKMW  262 (482)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~dg~i~i~  262 (482)
                      +.+ .+|.-.|.+++|+| |.+.+++++.|++|++|.+.+..+..++.+|...|+|+++-+  |..+|++|+.|.+|+||
T Consensus       134 qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW  212 (794)
T KOG0276|consen  134 QTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW  212 (794)
T ss_pred             eEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence            555 79999999999999 678899999999999999999999999999999999999987  44699999999999999


Q ss_pred             ECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEE
Q psy8448         263 NLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIY  341 (482)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~  341 (482)
                      |..+..|++++.   +|...|..+.|+|.- .++++|+.||+++||.. +-+....+.-+   ..+++|++-.+.++.++
T Consensus       213 DyQtk~CV~TLe---GHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~g---leRvW~I~~~k~~~~i~  285 (794)
T KOG0276|consen  213 DYQTKSCVQTLE---GHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYG---LERVWCIAAHKGDGKIA  285 (794)
T ss_pred             ecchHHHHHHhh---cccccceEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcC---CceEEEEeecCCCCeEE
Confidence            999999999998   999999999999988 79999999999999998 44444444443   67899999999999999


Q ss_pred             EEeCCcEEEE
Q psy8448         342 CVGEDMVLVV  351 (482)
Q Consensus       342 ~~~~dg~i~i  351 (482)
                      .|.+.|.+.+
T Consensus       286 vG~Deg~i~v  295 (794)
T KOG0276|consen  286 VGFDEGSVTV  295 (794)
T ss_pred             EeccCCcEEE
Confidence            9999998874

>KOG0295|consensus

Probab=100.00  E-value=3.2e-34  Score=240.18  Aligned_cols=260  Identities=22%  Similarity=0.326  Sum_probs=232.7

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      .+.+.+|+..+....     .-+.||++.|..++|+..|++||+++.|=.+.+||..+.       ......+.+|+..|
T Consensus       129 d~tikv~D~~tg~~e-----~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-------~~c~ks~~gh~h~v  196 (406)
T KOG0295|consen  129 DATIKVFDTETGELE-----RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-------FRCIKSLIGHEHGV  196 (406)
T ss_pred             CceEEEEEccchhhh-----hhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-------HHHHHHhcCcccce
Confidence            566777777666552     233499999999999999999999999999999998752       22333455678899


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  233 (482)
                      .++.|-|.|.++++++.|.+|+.|++.++.++.++ .+|..-|..++.+.||..+++++.|.+|++|-+.++++...++.
T Consensus       197 S~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~  275 (406)
T KOG0295|consen  197 SSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE  275 (406)
T ss_pred             eeEEEEecCCeeeecccccceeEEecccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc
Confidence            99999999999999999999999999999999999 79999999999999999999999999999999999999999999


Q ss_pred             cccceeEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEE
Q psy8448         234 HSSFVNDITFTAD---------------GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVV  298 (482)
Q Consensus       234 ~~~~i~~l~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  298 (482)
                      |..+|.|++|.|.               +.++.+++.|++|++||+.++.++.++.   +|...|..++|+|.| +++++
T Consensus       276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~---ghdnwVr~~af~p~G-kyi~S  351 (406)
T KOG0295|consen  276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV---GHDNWVRGVAFSPGG-KYILS  351 (406)
T ss_pred             cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe---cccceeeeeEEcCCC-eEEEE
Confidence            9999999999872               2589999999999999999999999998   999999999999998 99999


Q ss_pred             EeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         299 CNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       299 ~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      +..|+++++||+ +++....+..+   ..-++++.|+.+-.++++|+-|..+++|.
T Consensus       352 caDDktlrvwdl~~~~cmk~~~ah---~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  352 CADDKTLRVWDLKNLQCMKTLEAH---EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EecCCcEEEEEeccceeeeccCCC---cceeEEEecCCCCceEEeccccceeeeee
Confidence            999999999999 57777777754   77899999999999999999999999774

>KOG0283|consensus

Probab=100.00  E-value=2.6e-34  Score=266.42  Aligned_cols=262  Identities=18%  Similarity=0.365  Sum_probs=214.4

Q ss_pred             ceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCce-------------------------------------
Q psy8448          92 SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKI-------------------------------------  134 (482)
Q Consensus        92 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~-------------------------------------  134 (482)
                      .+.+..+|++.|.++.||+||+|||+||.|+.|+||.+...+.                                     
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            3344458999999999999999999999999999998765100                                     


Q ss_pred             ---------------eeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEE
Q psy8448         135 ---------------RKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI  199 (482)
Q Consensus       135 ---------------~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i  199 (482)
                                     ...+...+...+.||.+.|..+.|+.+ ++|++++.|.+|++|++...+++..|.  |...|+|+
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcV  415 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCV  415 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe--cCCeeEEE
Confidence                           000111223457889999999999976 489999999999999999999999984  99999999


Q ss_pred             EEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC-
Q psy8448         200 QFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG-  277 (482)
Q Consensus       200 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-  277 (482)
                      +|+| |.+++++|+.||.|+||++...+.+.-.. -..-|++++|.|||+..++|+.+|.+++|+.+..+....+.... 
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence            9999 78999999999999999997776655444 45789999999999999999999999999999877665543211 


Q ss_pred             ----CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         278 ----ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       278 ----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                          .....|+.+.|.|.....+++.+.|..|+|||. +..++..+.+.+. ...-....|+.||++|+++++|..|+||
T Consensus       495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEE
Confidence                112379999999988788999999999999999 4666677776554 3334568899999999999999999999


Q ss_pred             eehhhh
Q psy8448         353 LIQQYL  358 (482)
Q Consensus       353 ~~~~~~  358 (482)
                      +++...
T Consensus       574 ~~~~~~  579 (712)
T KOG0283|consen  574 KNDSFN  579 (712)
T ss_pred             eCCCCc
Confidence            986443

>KOG0319|consensus

Probab=100.00  E-value=8.8e-35  Score=264.63  Aligned_cols=329  Identities=20%  Similarity=0.289  Sum_probs=252.0

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC--EEEE
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE--MLAS  167 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~--~l~~  167 (482)
                      .+.+....-|+.||.-++|+|.+.+|++|+.||.|++||+..+.+...+..        |.+.|.++.|+|+-+  .|++
T Consensus        95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG--------~gGvVssl~F~~~~~~~lL~s  166 (775)
T KOG0319|consen   95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG--------HGGVVSSLLFHPHWNRWLLAS  166 (775)
T ss_pred             hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC--------CCceEEEEEeCCccchhheee
Confidence            344444445999999999999999999999999999999998887766654        468999999999654  5889


Q ss_pred             EeCCCcEEEEEcCCCeE-eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE------------------
Q psy8448         168 GSQSGKVKIWKIATGQC-LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML------------------  228 (482)
Q Consensus       168 ~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------  228 (482)
                      |..|+++++||+.+... +..+ ..|.+.|++++|.+++..+++++.|..+.+||+.+.+..                  
T Consensus       167 g~~D~~v~vwnl~~~~tcl~~~-~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~  245 (775)
T KOG0319|consen  167 GATDGTVRVWNLNDKRTCLHTM-ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREE  245 (775)
T ss_pred             cCCCceEEEEEcccCchHHHHH-HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechh
Confidence            99999999999986554 5555 679999999999999888888888888888876310000                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy8448         229 --------------------------------------------------------------------------------  228 (482)
Q Consensus       229 --------------------------------------------------------------------------------  228 (482)
                                                                                                      
T Consensus       246 ~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE  325 (775)
T KOG0319|consen  246 LGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE  325 (775)
T ss_pred             cCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchh
Confidence                                                                                            


Q ss_pred             ---------------------------------EEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeee
Q psy8448         229 ---------------------------------KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC-TSTFK  274 (482)
Q Consensus       229 ---------------------------------~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~  274 (482)
                                                       ..+.+|...|.++....+|-+|++++.|.++++|.++++.. ...+.
T Consensus       326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a  405 (775)
T KOG0319|consen  326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA  405 (775)
T ss_pred             heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence                                             00135667777777556778899999999999998854332 12222


Q ss_pred             ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-c------EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         275 SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG-Q------IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       275 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-~------~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      ...+|.+.|.+++++..+..+|++++.|+++++|++.. +      .+..-.....|...|++++++|+.+++++||.|.
T Consensus       406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk  485 (775)
T KOG0319|consen  406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK  485 (775)
T ss_pred             hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc
Confidence            23389999999999999989999999999999999954 1      1111112344688999999999999999999999


Q ss_pred             EEEEEeehhhhhhhcccccceeeeecccceeecccccccceec---------cCCCcccchhccccccCCCchhhhhhhH
Q psy8448         348 VLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIAD---------INNGHWDTVLKSVQSLKLPEKKLIDLYE  418 (482)
Q Consensus       348 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~  418 (482)
                      +.+||+++                  ......++.+|..-+-+         +++.+.|.+++.                
T Consensus       486 taKiW~le------------------~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI----------------  531 (775)
T KOG0319|consen  486 TAKIWDLE------------------QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI----------------  531 (775)
T ss_pred             ceeeeccc------------------CceEEEEeeCCccceEEEEeccccceeEeccCCceEEE----------------
Confidence            99966544                  44444444444443332         344444555544                


Q ss_pred             HHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         419 QVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                           |...++.|+.++.||+..|..++|-.+|+.|+||+.||.|++|
T Consensus       532 ---------------------W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW  574 (775)
T KOG0319|consen  532 ---------------------WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW  574 (775)
T ss_pred             ---------------------EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence                                 4445667778999999999999999999999999999999999

>KOG0281|consensus

Probab=100.00  E-value=1.2e-35  Score=247.26  Aligned_cols=275  Identities=21%  Similarity=0.323  Sum_probs=230.4

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      ....|+|+.+.  ...+++|..|++|+|||.++..+..        .+.||++.|.|+.|.  .+.+++|+.|.+|++||
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~--------~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWD  263 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK--------ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWD  263 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHH--------hhhcCCCcEEeeecc--ceEEEecCCCceEEEEe
Confidence            45689999996  5578999999999999988755443        455678999999996  56999999999999999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc---eEEEeeccccceeEEEEcCCCCEEEEEeC
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK---MLKEFRGHSSFVNDITFTADGHSVLSASS  255 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~~  255 (482)
                      +++++++.++ .+|...|..+.|+  +.++++++.|.++.+||+.+..   +...+.+|...|+.+.|+  .+++++++.
T Consensus       264 v~tge~l~tl-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg  338 (499)
T KOG0281|consen  264 VNTGEPLNTL-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG  338 (499)
T ss_pred             ccCCchhhHH-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC
Confidence            9999999998 6899999999996  5699999999999999998765   345678999999999996  469999999


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEc
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      |.+|++|++.++++++++.   +|...|.|+.+..   +++++|+.|.+|++||+ .|..++.+.+|   ..-|.++.|+
T Consensus       339 DRTikvW~~st~efvRtl~---gHkRGIAClQYr~---rlvVSGSSDntIRlwdi~~G~cLRvLeGH---EeLvRciRFd  409 (499)
T KOG0281|consen  339 DRTIKVWSTSTCEFVRTLN---GHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVRCIRFD  409 (499)
T ss_pred             CceEEEEeccceeeehhhh---cccccceehhccC---eEEEecCCCceEEEEeccccHHHHHHhch---HHhhhheeec
Confidence            9999999999999999988   8999998888753   89999999999999999 68888888876   7789999995


Q ss_pred             CCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhh
Q psy8448         335 PRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLI  414 (482)
Q Consensus       335 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  414 (482)
                        .+.+++|+.||.|+                  +|++..+..-+                                   
T Consensus       410 --~krIVSGaYDGkik------------------vWdl~aaldpr-----------------------------------  434 (499)
T KOG0281|consen  410 --NKRIVSGAYDGKIK------------------VWDLQAALDPR-----------------------------------  434 (499)
T ss_pred             --CceeeeccccceEE------------------EEecccccCCc-----------------------------------
Confidence              67999999999999                  55555441000                                   


Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         415 DLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                .+....|+..+..|++.|..+.|.  ...+++++.|.+|.||
T Consensus       435 --------------------------a~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiW  474 (499)
T KOG0281|consen  435 --------------------------APASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIW  474 (499)
T ss_pred             --------------------------ccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEE
Confidence                                      011223344777899999999995  5589999999999998

>KOG0306|consensus

Probab=100.00  E-value=7.8e-34  Score=258.80  Aligned_cols=281  Identities=20%  Similarity=0.284  Sum_probs=246.7

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      --..||.+.|.++++|.+...+++|+ .+.++||+..+.+++.++..          +.+.+..|.|.++++++|...|.
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~----------~y~l~~~Fvpgd~~Iv~G~k~Ge  435 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC----------GYILASKFVPGDRYIVLGTKNGE  435 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc----------ccEEEEEecCCCceEEEeccCCc
Confidence            34459999999999999998888876 57899999999999887764          46899999999999999999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC-----CceE--------EEeeccccceeE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS-----GKML--------KEFRGHSSFVND  240 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~--------~~~~~~~~~i~~  240 (482)
                      +.+||+.+...+..+ ..|.+.|.+++.+||+..+++|+.|.+|++||..-     +...        .++ .-...|.|
T Consensus       436 l~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~  513 (888)
T KOG0306|consen  436 LQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLC  513 (888)
T ss_pred             eEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEE
Confidence            999999998888887 69999999999999999999999999999999741     1111        112 24567999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEec
Q psy8448         241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLS  319 (482)
Q Consensus       241 l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~  319 (482)
                      +.++||+++|+++--|.++++|-+++.+....+.   +|.-||.++.++|++ .++++|+.|.+|++|-++ |.+-+.+.
T Consensus       514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY---GHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~f  589 (888)
T KOG0306|consen  514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY---GHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFF  589 (888)
T ss_pred             EEEcCCCcEEEEEeccCeEEEEEecceeeeeeec---ccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhh
Confidence            9999999999999999999999999988777777   999999999999999 899999999999999995 77777777


Q ss_pred             CCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccch
Q psy8448         320 SGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTV  399 (482)
Q Consensus       320 ~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (482)
                      .|   ...|.++.|.|+..+++++|.|+.++                  .||...-                        
T Consensus       590 AH---dDSvm~V~F~P~~~~FFt~gKD~kvK------------------qWDg~kF------------------------  624 (888)
T KOG0306|consen  590 AH---DDSVMSVQFLPKTHLFFTCGKDGKVK------------------QWDGEKF------------------------  624 (888)
T ss_pred             cc---cCceeEEEEcccceeEEEecCcceEE------------------eechhhh------------------------
Confidence            65   78999999999999999999999999                  6655443                        


Q ss_pred             hccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCcee
Q psy8448         400 LKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLL  479 (482)
Q Consensus       400 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i  479 (482)
                             ..                             .+          .+.+|...|.+++.+|+|.+++|+|.|.+|
T Consensus       625 -------e~-----------------------------iq----------~L~~H~~ev~cLav~~~G~~vvs~shD~sI  658 (888)
T KOG0306|consen  625 -------EE-----------------------------IQ----------KLDGHHSEVWCLAVSPNGSFVVSSSHDKSI  658 (888)
T ss_pred             -------hh-----------------------------he----------eeccchheeeeeEEcCCCCeEEeccCCcee
Confidence                   22                             33          888999999999999999999999999999


Q ss_pred             ecC
Q psy8448         480 RFS  482 (482)
Q Consensus       480 ~iW  482 (482)
                      |+|
T Consensus       659 Rlw  661 (888)
T KOG0306|consen  659 RLW  661 (888)
T ss_pred             Eee
Confidence            999

>KOG1407|consensus

Probab=100.00  E-value=2.1e-33  Score=225.05  Aligned_cols=245  Identities=21%  Similarity=0.313  Sum_probs=214.0

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVK  175 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~  175 (482)
                      .+|...|.+++|+.+|..|++|+.|+++.+|++...+.....      ...+|.+.|-.++|+| +...|++++.|.+|+
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~------~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL------VYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh------cccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            489999999999999999999999999999999877543332      3456788999999998 667899999999999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS  255 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~  255 (482)
                      +||++.+++...+.  ....=.-+.|+|+|.+++++..|..|.+.|.++.+.+...+ ....+..++|+-++.+++....
T Consensus        91 ~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~G  167 (313)
T KOG1407|consen   91 IWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNG  167 (313)
T ss_pred             EEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecC
Confidence            99999999998874  33334568899999999999999999999999988877665 4566888999988888888888


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEc
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      .|.|.|......+++..++   .|.....||.|+|+| ++|++|+.|..+.+||+ +--.++.+...   ..+|+.+.|+
T Consensus       168 lG~v~ILsypsLkpv~si~---AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC~R~isRl---dwpVRTlSFS  240 (313)
T KOG1407|consen  168 LGCVEILSYPSLKPVQSIK---AHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELICERCISRL---DWPVRTLSFS  240 (313)
T ss_pred             CceEEEEeccccccccccc---cCCcceEEEEECCCC-ceEeeccccceeeccChhHhhhheeeccc---cCceEEEEec
Confidence            8999999999988888888   999999999999999 99999999999999999 45566666655   7899999999


Q ss_pred             CCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeeccc
Q psy8448         335 PRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETG  375 (482)
Q Consensus       335 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  375 (482)
                      .||++||+|++|..|-                  +-++++|
T Consensus       241 ~dg~~lASaSEDh~ID------------------IA~vetG  263 (313)
T KOG1407|consen  241 HDGRMLASASEDHFID------------------IAEVETG  263 (313)
T ss_pred             cCcceeeccCccceEE------------------eEecccC
Confidence            9999999999999999                  7788888

>KOG0645|consensus

Probab=100.00  E-value=4.9e-33  Score=224.17  Aligned_cols=205  Identities=20%  Similarity=0.336  Sum_probs=179.7

Q ss_pred             ccccccccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCC---CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448         145 NFMLMEEAVMSLAYSRD-SEMLASGSQSGKVKIWKIAT---GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH  220 (482)
Q Consensus       145 ~~~~h~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~  220 (482)
                      .+.+|.+.+..++|+|. |..|++|+.|+.|++|+...   -.+...+..+|...|++++|+|.|++|++|+.|.++.||
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw   88 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW   88 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence            44567889999999997 88999999999999999874   344555666899999999999999999999999999999


Q ss_pred             eCCCC--ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEE
Q psy8448         221 GLKSG--KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVV  298 (482)
Q Consensus       221 d~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  298 (482)
                      .-..+  +++.++.+|...|.|++|+++|++|++++.|..|-||.+..+........++.|...|..+.|+|.. .+|++
T Consensus        89 ~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S  167 (312)
T KOG0645|consen   89 KKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFS  167 (312)
T ss_pred             ecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEE
Confidence            86543  6889999999999999999999999999999999999998776665555566999999999999987 89999


Q ss_pred             EeCCCeEEEEEcC-C---cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         299 CNKTNTVVIMNMQ-G---QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       299 ~~~d~~i~i~d~~-~---~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ++.|++|++|+.. +   ....++..+   ...|.+++|++.|..|+++++|++++||.
T Consensus       168 ~SYDnTIk~~~~~~dddW~c~~tl~g~---~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  168 CSYDNTIKVYRDEDDDDWECVQTLDGH---ENTVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             eccCCeEEEEeecCCCCeeEEEEecCc---cceEEEEEecCCCceEEEecCCcceEeee
Confidence            9999999999874 3   456666665   66899999999999999999999999653

>KOG1446|consensus

Probab=100.00  E-value=4.3e-32  Score=224.09  Aligned_cols=240  Identities=18%  Similarity=0.297  Sum_probs=207.3

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC--CCcEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ--SGKVKI  176 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~--dg~i~i  176 (482)
                      -...|+++.|+++|.+|++++.|.+++|||..+++...++..+        ...+..++|....+.++.++.  |.+|+.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk--------kyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK--------KYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc--------cccccEEEEecCCceEEEccCCCCCceEE
Confidence            4678999999999999999999999999999999988887765        356888888887777777765  889999


Q ss_pred             EEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC
Q psy8448         177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD  256 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d  256 (482)
                      .++.+++.++-+ .+|...|.+++.+|-+..+++++.|++|++||++..++...+.....+  .++|+|+|-++|++...
T Consensus        85 Lsl~dNkylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   85 LSLHDNKYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGS  161 (311)
T ss_pred             EEeecCceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCC
Confidence            999999999999 899999999999998899999999999999999988887777654444  48899999999999888


Q ss_pred             CcEEEEECCCC--ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEE
Q psy8448         257 GTVKMWNLKTT--ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTT  333 (482)
Q Consensus       257 g~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~  333 (482)
                      ..|++||++.-  .+..++..........+.+.|+|+| +.++.++..+.+++.|. +|.....+........--...+|
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence            89999999974  3445555333557788999999999 88999999999999999 89988888876554444468999


Q ss_pred             cCCCCEEEEEeCCcEEE
Q psy8448         334 SPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       334 ~~~g~~l~~~~~dg~i~  350 (482)
                      +||++++++|+.||+|.
T Consensus       241 tPds~Fvl~gs~dg~i~  257 (311)
T KOG1446|consen  241 TPDSKFVLSGSDDGTIH  257 (311)
T ss_pred             CCCCcEEEEecCCCcEE
Confidence            99999999999999999

>KOG0296|consensus

Probab=100.00  E-value=6.1e-33  Score=232.70  Aligned_cols=287  Identities=22%  Similarity=0.288  Sum_probs=240.9

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      +....|+.+|.+++.+|+.++++||+.|..-.+|++.+++....        +.+|.+.|+++.|+.+|.+||+|+.+|.
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--------ltgHKDSVt~~~FshdgtlLATGdmsG~  129 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--------LTGHKDSVTCCSFSHDGTLLATGDMSGK  129 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--------ecCCCCceEEEEEccCceEEEecCCCcc
Confidence            44559999999999999999999999999999999999885443        3456899999999999999999999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~  253 (482)
                      |+||+..++.....+. ..-..+.=+.|+|.+..|+.|+.||.+.+|.+.+....+.+.+|..++++=.|.|+|+.++++
T Consensus       130 v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tg  208 (399)
T KOG0296|consen  130 VLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTG  208 (399)
T ss_pred             EEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEE
Confidence            9999999999888873 455667888999999999999999999999999988889999999999999999999999999


Q ss_pred             eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecC--------Cccc
Q psy8448         254 SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSS--------GKRE  324 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~--------~~~~  324 (482)
                      ..||+|++||+.++++...+...  ......++.++..+ ..++.|+.++.+++-+. .|+.+.....        ....
T Consensus       209 y~dgti~~Wn~ktg~p~~~~~~~--e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  209 YDDGTIIVWNPKTGQPLHKITQA--EGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             ecCceEEEEecCCCceeEEeccc--ccCcCCcccccccc-ceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence            99999999999999988887642  24556778888777 78999999999999887 6777666652        1111


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccc
Q psy8448         325 GGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQ  404 (482)
Q Consensus       325 ~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (482)
                      ...|-.+.++..=.+.|+|+-||+|.|||+.                  ..                             
T Consensus       286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a------------------~~-----------------------------  318 (399)
T KOG0296|consen  286 DESVESIPSSSKLPLAACGSVDGTIAIYDLA------------------AS-----------------------------  318 (399)
T ss_pred             hhhhhhcccccccchhhcccccceEEEEecc------------------cc-----------------------------
Confidence            2334456666677889999999999966543                  22                             


Q ss_pred             ccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         405 SLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       405 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                        ++                             +           ..-.|...|+.+.|-+ ..+|++++.||.|+.|
T Consensus       319 --~~-----------------------------R-----------~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~w  353 (399)
T KOG0296|consen  319 --TL-----------------------------R-----------HICEHEDGVTKLKWLN-TDYLLTACANGKVRQW  353 (399)
T ss_pred             --hh-----------------------------h-----------eeccCCCceEEEEEcC-cchheeeccCceEEee
Confidence              11                             1           3336888899999999 6799999999999998

>KOG0292|consensus

Probab=100.00  E-value=1.5e-33  Score=261.30  Aligned_cols=247  Identities=22%  Similarity=0.348  Sum_probs=219.5

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      .+..|..++|+|...+++++-..|.|++||.+-+.++..+..        |+++|..++|+|+..++++|+.|..|++|+
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde--------HdGpVRgv~FH~~qplFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE--------HDGPVRGVDFHPTQPLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc--------cCCccceeeecCCCCeEEecCCccEEEEEe
Confidence            467899999999999999999999999999998887766554        589999999999999999999999999999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCc
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGT  258 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~  258 (482)
                      ..+.+++.++ .+|-..|+.+.|++.-.+|++++.|.+|+||+..+++++..+.+|...|.|..|+|....+++++-|.+
T Consensus        80 Yk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT  158 (1202)
T KOG0292|consen   80 YKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT  158 (1202)
T ss_pred             cccceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence            9999999999 799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCceee--------------------------eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q psy8448         259 VKMWNLKTTECTS--------------------------TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG  312 (482)
Q Consensus       259 i~i~d~~~~~~~~--------------------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~  312 (482)
                      |++||+...+...                          .-..+.+|+..|+-++|+|.- .++++|+.|+.|++|.++.
T Consensus       159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEecc
Confidence            9999985321100                          001234899999999999988 7999999999999999966


Q ss_pred             cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         313 QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       313 ~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ........-.+|...|.++-|+|..+++++.|+|+.|++||+.
T Consensus       238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence            5555555556668999999999999999999999999966654

>KOG0306|consensus

Probab=100.00  E-value=6.1e-33  Score=253.05  Aligned_cols=312  Identities=21%  Similarity=0.295  Sum_probs=237.4

Q ss_pred             eeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc-------
Q psy8448          69 TIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ-------  141 (482)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-------  141 (482)
                      .+.+.+|.+.+|+......+..     +.||+..|+++.|+..|..||+|+.|+.|.+||+-.......+..+       
T Consensus        81 AVGYaDGsVqif~~~s~~~~~t-----fngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~  155 (888)
T KOG0306|consen   81 AVGYADGSVQIFSLESEEILIT-----FNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQA  155 (888)
T ss_pred             EEEecCceEEeeccCCCceeee-----ecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHH
Confidence            4667799999999886644333     3499999999999999999999999999999998654433333221       


Q ss_pred             ---------------------------cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------------
Q psy8448         142 ---------------------------AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT-------------  181 (482)
Q Consensus       142 ---------------------------~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-------------  181 (482)
                                                 .......|++.+.++++.+  +.+++++.|+.+++|++..             
T Consensus       156 ~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~  233 (888)
T KOG0306|consen  156 LFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYIST  233 (888)
T ss_pred             hccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccccccccee
Confidence                                       1112234556666666654  4566666666666666510             


Q ss_pred             ---C--------eEeEEe--------------------------------------------------------------
Q psy8448         182 ---G--------QCLRKL--------------------------------------------------------------  188 (482)
Q Consensus       182 ---~--------~~~~~~--------------------------------------------------------------  188 (482)
                         |        +.+...                                                              
T Consensus       234 ~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r  313 (888)
T KOG0306|consen  234 KLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKR  313 (888)
T ss_pred             eccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHH
Confidence               0        000000                                                              


Q ss_pred             -------------------------------------------------------ecccCCCeEEEEEccCCCEEEEEEC
Q psy8448         189 -------------------------------------------------------EKAHSLGVTCIQFSRDNSQILTASF  213 (482)
Q Consensus       189 -------------------------------------------------------~~~~~~~v~~i~~~~~~~~l~~~~~  213 (482)
                                                                             ..+|...|.+++++.+...+++|+ 
T Consensus       314 ~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-  392 (888)
T KOG0306|consen  314 LETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-  392 (888)
T ss_pred             HHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-
Confidence                                                                   025667788888887776666655 


Q ss_pred             CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC
Q psy8448         214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT  293 (482)
Q Consensus       214 dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  293 (482)
                      .+.+++|+..+.++++++..  +.+.+..|.|.++++++|...|.+.+||+.+...+.+++   .|++.|.+++..|++ 
T Consensus       393 ~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~---AHdgaIWsi~~~pD~-  466 (888)
T KOG0306|consen  393 GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR---AHDGAIWSISLSPDN-  466 (888)
T ss_pred             CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh---ccccceeeeeecCCC-
Confidence            77899999999999999874  388999999999999999999999999999998888887   999999999999999 


Q ss_pred             CEEEEEeCCCeEEEEEcC------CcEEEEecCCc----ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcc
Q psy8448         294 EHFVVCNKTNTVVIMNMQ------GQIVRSLSSGK----REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNL  363 (482)
Q Consensus       294 ~~l~~~~~d~~i~i~d~~------~~~~~~~~~~~----~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~  363 (482)
                      ..+++++.|.+|++||..      |...+.+.-.+    .-...|.|+.+||||++|+++=-|+++.||.          
T Consensus       467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf----------  536 (888)
T KOG0306|consen  467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF----------  536 (888)
T ss_pred             CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE----------
Confidence            899999999999999973      11111111111    1256799999999999999999999999653          


Q ss_pred             cccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcc
Q psy8448         364 MKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPM  443 (482)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (482)
                              +.+-                               +.                             ..    
T Consensus       537 --------lDtl-------------------------------KF-----------------------------fl----  544 (888)
T KOG0306|consen  537 --------LDTL-------------------------------KF-----------------------------FL----  544 (888)
T ss_pred             --------ecce-------------------------------ee-----------------------------ee----
Confidence                    3332                               22                             22    


Q ss_pred             cccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         444 IFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       444 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                            .+.||.-||.++..|||+++++|||.|..|+||
T Consensus       545 ------sLYGHkLPV~smDIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  545 ------SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             ------eecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence                  778999999999999999999999999999999

>KOG0265|consensus

Probab=100.00  E-value=4.3e-33  Score=227.72  Aligned_cols=205  Identities=22%  Similarity=0.362  Sum_probs=181.8

Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG-QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH  220 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~  220 (482)
                      +...+.+|++.|+.+.|+|+|.+|++|+.|..|.+|++... +....+ ++|.+.|..+.|.+|+..|++++.|.+|+.|
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            33456789999999999999999999999999999996443 444555 7999999999999999999999999999999


Q ss_pred             eCCCCceEEEeeccccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448         221 GLKSGKMLKEFRGHSSFVNDITFTADGH-SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       221 d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                      |+++++..+.+++|...++++.-+.-|. ++.+++.|+++++||+++.++++++    ....+++++.|..++ ..+++|
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~----~~kyqltAv~f~d~s-~qv~sg  192 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF----ENKYQLTAVGFKDTS-DQVISG  192 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc----ccceeEEEEEecccc-cceeec
Confidence            9999999999999999999998555454 4567888999999999999998888    457789999999988 789999


Q ss_pred             eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         300 NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       300 ~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +-|+.|++||+ ++..+..+.++   ..+|+.+..+|+|.++.+-+.|.++++||++
T Consensus       193 gIdn~ikvWd~r~~d~~~~lsGh---~DtIt~lsls~~gs~llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  193 GIDNDIKVWDLRKNDGLYTLSGH---ADTITGLSLSRYGSFLLSNSMDNTVRVWDVR  246 (338)
T ss_pred             cccCceeeeccccCcceEEeecc---cCceeeEEeccCCCccccccccceEEEEEec
Confidence            99999999999 56777777776   7899999999999999999999999988776

>KOG0266|consensus

Probab=100.00  E-value=1.9e-32  Score=258.87  Aligned_cols=273  Identities=29%  Similarity=0.487  Sum_probs=225.0

Q ss_pred             CCCCceeecc--CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecC-CCceeecccc
Q psy8448          64 LPPGTTIDLF--RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFT-TGKIRKDLKY  140 (482)
Q Consensus        64 ~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~  140 (482)
                      .++|..+...  ++.+.+|.......  .+.+. +.+|...|++++|+|+++++++++.|++|+|||+. .+..+.++  
T Consensus       168 s~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~-l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l--  242 (456)
T KOG0266|consen  168 SPDGRALAAASSDGLIRIWKLEGIKS--NLLRE-LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL--  242 (456)
T ss_pred             cCCCCeEEEccCCCcEEEeecccccc--hhhcc-ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe--
Confidence            4566654443  44455555532221  22222 26999999999999999999999999999999994 33444444  


Q ss_pred             ccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448         141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH  220 (482)
Q Consensus       141 ~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~  220 (482)
                            .+|...|++++|+|+++++++|+.|++|+|||++++++...+ ..|...|++++|++++.+|++++.|+.|++|
T Consensus       243 ------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw  315 (456)
T KOG0266|consen  243 ------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVW  315 (456)
T ss_pred             ------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence                  346899999999999999999999999999999999999999 7999999999999999999999999999999


Q ss_pred             eCCCCc--eEEEeeccccc--eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc---ceeEEEEcCCCC
Q psy8448         221 GLKSGK--MLKEFRGHSSF--VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI---AVNSIHLLPKNT  293 (482)
Q Consensus       221 d~~~~~--~~~~~~~~~~~--i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~  293 (482)
                      |+.++.  ++..+.++...  +++++|+|++.++++++.|+.+++||+..+.....+.   +|..   .+.+...++.+ 
T Consensus       316 d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-  391 (456)
T KOG0266|consen  316 DLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT---GHSNLVRCIFSPTLSTGG-  391 (456)
T ss_pred             ECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec---ccCCcceeEecccccCCC-
Confidence            999999  56777766555  9999999999999999999999999999999888887   4444   34444556666 


Q ss_pred             CEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe--CCcEEEEEee
Q psy8448         294 EHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG--EDMVLVVRLI  354 (482)
Q Consensus       294 ~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~--~dg~i~iw~~  354 (482)
                      .++++++.|+.|++|+. .+..+..+..+.  ...+..++++|..+++++++  .|+.+++|..
T Consensus       392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~--~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHS--KAAVSDLSSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             CeEEEEeCCceEEEEeCCccchhhhhcCCC--CCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence            89999999999999999 466666666653  67789999999999999998  7888997754

>KOG0316|consensus

Probab=100.00  E-value=4e-33  Score=220.09  Aligned_cols=236  Identities=23%  Similarity=0.343  Sum_probs=207.7

Q ss_pred             ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc
Q psy8448         147 MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK  226 (482)
Q Consensus       147 ~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  226 (482)
                      ..++++|.++.|+-+|+|.++|+.|.+|++|+...+..++++ .+|...|..++.+.|+..+++|+.|..+.+||+.+|+
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence            446789999999999999999999999999999999999999 7999999999999999999999999999999999999


Q ss_pred             eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCe
Q psy8448         227 MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT--ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT  304 (482)
Q Consensus       227 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  304 (482)
                      ..+.+++|.+.|+.+.|+.+...+++|+.|..+++||.++.  ++++.+.   .....|.++....   ..+++|+.||+
T Consensus        93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild---ea~D~V~Si~v~~---heIvaGS~DGt  166 (307)
T KOG0316|consen   93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD---EAKDGVSSIDVAE---HEIVAGSVDGT  166 (307)
T ss_pred             eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh---hhcCceeEEEecc---cEEEeeccCCc
Confidence            99999999999999999999999999999999999999874  4555554   5667889998876   67999999999


Q ss_pred             EEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccc
Q psy8448         305 VVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDS  383 (482)
Q Consensus       305 i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (482)
                      ++.||+ .|+......     ..+|+++.|++|++.+++++-|++++                  +.|-.+|        
T Consensus       167 vRtydiR~G~l~sDy~-----g~pit~vs~s~d~nc~La~~l~stlr------------------LlDk~tG--------  215 (307)
T KOG0316|consen  167 VRTYDIRKGTLSSDYF-----GHPITSVSFSKDGNCSLASSLDSTLR------------------LLDKETG--------  215 (307)
T ss_pred             EEEEEeecceeehhhc-----CCcceeEEecCCCCEEEEeeccceee------------------ecccchh--------
Confidence            999999 466555554     56899999999999999999999999                  8888888        


Q ss_pred             cccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccce--eec
Q psy8448         384 VDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLV--IGL  461 (482)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~  461 (482)
                                             ++                             ..          .+++|...=  ...
T Consensus       216 -----------------------kl-----------------------------L~----------sYkGhkn~eykldc  233 (307)
T KOG0316|consen  216 -----------------------KL-----------------------------LK----------SYKGHKNMEYKLDC  233 (307)
T ss_pred             -----------------------HH-----------------------------HH----------Hhcccccceeeeee
Confidence                                   44                             44          666776543  234


Q ss_pred             cccCCcceEEEEecCceeecC
Q psy8448         462 THHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       462 ~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      .++.....+++||+||.|++|
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFW  254 (307)
T ss_pred             eecccceeEEeccCCceEEEE
Confidence            566667799999999999998

>KOG0285|consensus

Probab=100.00  E-value=6.8e-33  Score=231.71  Aligned_cols=295  Identities=16%  Similarity=0.275  Sum_probs=253.2

Q ss_pred             eeeChhHHHHHHHhHhhhhhccCCCCCCceeeccC--CccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEE
Q psy8448          40 SVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFR--GKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLIT  117 (482)
Q Consensus        40 ~~~p~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  117 (482)
                      .|.++=+|.+++..-+-|-+...+-|....+...+  ..+.+|+.........     +.||...|..+++|+-..||++
T Consensus       136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt-----ltGhi~~vr~vavS~rHpYlFs  210 (460)
T KOG0285|consen  136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT-----LTGHIETVRGVAVSKRHPYLFS  210 (460)
T ss_pred             cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe-----ecchhheeeeeeecccCceEEE
Confidence            46666678888888888888888888888877754  4477888765544333     3499999999999999999999


Q ss_pred             EeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeE
Q psy8448         118 GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVT  197 (482)
Q Consensus       118 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  197 (482)
                      ++.|+.|+.||++..+.+..+.        +|-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+ .+|..+|.
T Consensus       211 ~gedk~VKCwDLe~nkvIR~Yh--------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~  281 (460)
T KOG0285|consen  211 AGEDKQVKCWDLEYNKVIRHYH--------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVA  281 (460)
T ss_pred             ecCCCeeEEEechhhhhHHHhc--------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcce
Confidence            9999999999999888766554        35689999999999999999999999999999999999999 79999999


Q ss_pred             EEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC
Q psy8448         198 CIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG  277 (482)
Q Consensus       198 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  277 (482)
                      .+.+.|-+..+++|+.|++|++||++.++.+.++..|...+.+++.+|....+++++.|. |+-|++..+.....+.   
T Consensus       282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls---  357 (460)
T KOG0285|consen  282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS---  357 (460)
T ss_pred             eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc---
Confidence            999999888999999999999999999999999999999999999999999999998875 9999999998777765   


Q ss_pred             CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecC-----CcccCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448         278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSS-----GKREGGDFLCCTTSPRGEWIYCVGEDMVLVV  351 (482)
Q Consensus       278 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-----~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~i  351 (482)
                      +|+..|++++...++  ++++|+..|.+.+||. .|...+....     .......|.+.+|...|..|++|..|.+|.+
T Consensus       358 gh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~  435 (460)
T KOG0285|consen  358 GHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKM  435 (460)
T ss_pred             cccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEE
Confidence            899999999999885  8999999999999999 4443333321     1112456889999999999999999999997


Q ss_pred             Eee
Q psy8448         352 RLI  354 (482)
Q Consensus       352 w~~  354 (482)
                      |.-
T Consensus       436 ~ke  438 (460)
T KOG0285|consen  436 YKE  438 (460)
T ss_pred             Eec
Confidence            743

>KOG0277|consensus

Probab=100.00  E-value=8.4e-33  Score=220.76  Aligned_cols=279  Identities=18%  Similarity=0.257  Sum_probs=223.7

Q ss_pred             EEEEEcC-CCCEEEEE-------eCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcE
Q psy8448         104 ECARFSP-DGQYLITG-------SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKV  174 (482)
Q Consensus       104 ~~~~~s~-~~~~l~s~-------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i  174 (482)
                      .++.||| -.++||.+       ...|++.|.++...+.+.....-.      -++.+..++|++ ..+.+++++.||++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d------~~D~LfdV~Wse~~e~~~~~a~GDGSL   85 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD------TEDGLFDVAWSENHENQVIAASGDGSL   85 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee------cccceeEeeecCCCcceEEEEecCceE
Confidence            5788999 33344333       246899999997444333222111      147899999999 45688899999999


Q ss_pred             EEEEcCCC-eEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC-CCCEEE
Q psy8448         175 KIWKIATG-QCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-DGHSVL  251 (482)
Q Consensus       175 ~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~  251 (482)
                      ++||+... .++..+ +.|...|.++.|++ ++..+++++.|++|++|+...++.+.++.+|...|...+|+| ..+.++
T Consensus        86 rl~d~~~~s~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa  164 (311)
T KOG0277|consen   86 RLFDLTMPSKPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFA  164 (311)
T ss_pred             EEeccCCCCcchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEE
Confidence            99997544 456666 78999999999999 567788899999999999999999999999999999999999 678899


Q ss_pred             EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEE
Q psy8448         252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~  329 (482)
                      +++.|+++++||++.......+.   .|...+.++.|+.-+..++++|+.|+.|+.||++  ..++..+.+|   ...|+
T Consensus       165 s~Sgd~~l~lwdvr~~gk~~~i~---ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh---~~AVR  238 (311)
T KOG0277|consen  165 SASGDGTLRLWDVRSPGKFMSIE---AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH---GLAVR  238 (311)
T ss_pred             EccCCceEEEEEecCCCceeEEE---eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC---ceEEE
Confidence            99999999999999765444465   8889999999999988999999999999999995  4455666544   88999


Q ss_pred             EEEEcCCC-CEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCC
Q psy8448         330 CCTTSPRG-EWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKL  408 (482)
Q Consensus       330 ~~~~~~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  408 (482)
                      .+.|||.. ..|++++.|-+++||                  +...+.                              .+
T Consensus       239 kvk~Sph~~~lLaSasYDmT~riw------------------~~~~~d------------------------------s~  270 (311)
T KOG0277|consen  239 KVKFSPHHASLLASASYDMTVRIW------------------DPERQD------------------------------SA  270 (311)
T ss_pred             EEecCcchhhHhhhccccceEEec------------------ccccch------------------------------hh
Confidence            99999974 578899999999955                  444330                              01


Q ss_pred             CchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCC-cceEEEEecCceeecC
Q psy8448         409 PEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPH-QNLLGTYSEDGLLRFS  482 (482)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~s~~~Dg~i~iW  482 (482)
                                                   +.          +...|+.-|..+.||+- +.++|+++.|+.++||
T Consensus       271 -----------------------------~e----------~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw  306 (311)
T KOG0277|consen  271 -----------------------------IE----------TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVW  306 (311)
T ss_pred             -----------------------------hh----------hhhccceEEeccccccccCceeeecccccceeee
Confidence                                         11          55678888999999985 6699999999999998

>KOG0305|consensus

Probab=100.00  E-value=1.3e-32  Score=248.77  Aligned_cols=273  Identities=21%  Similarity=0.303  Sum_probs=233.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG  182 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  182 (482)
                      .+-++|+ ..+.||.|. ...|++|+..+++........        ++.|+++.|+++|.+|++|..+|.|.|||..+.
T Consensus       180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~--------~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~  249 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFG--------EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ  249 (484)
T ss_pred             hhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecC--------CCceEEEEECCCCCEEEEeecCCeEEEEehhhc
Confidence            3446677 455777775 457999999999866555443        478999999999999999999999999999999


Q ss_pred             eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE-eeccccceeEEEEcCCCCEEEEEeCCCcEEE
Q psy8448         183 QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTADGHSVLSASSDGTVKM  261 (482)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i  261 (482)
                      +.+..+...|...|.+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..++|++|++++++|+.|+.+.|
T Consensus       250 k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I  327 (484)
T KOG0305|consen  250 KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI  327 (484)
T ss_pred             cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEe
Confidence            99988854499999999997  66799999999999999998877655 8899999999999999999999999999999


Q ss_pred             EECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe--CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCC
Q psy8448         262 WNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN--KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGE  338 (482)
Q Consensus       262 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~  338 (482)
                      ||....++...+.   .|...|..++|+|-...+|++|+  .|+.|++||. .+..+..+..    ...|.++.|++..+
T Consensus       328 wd~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt----gsQVcsL~Wsk~~k  400 (484)
T KOG0305|consen  328 WDGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT----GSQVCSLIWSKKYK  400 (484)
T ss_pred             ccCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc----CCceeeEEEcCCCC
Confidence            9998878777777   89999999999999888999864  6899999999 6887777776    57899999999987


Q ss_pred             EEEE--EeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhh
Q psy8448         339 WIYC--VGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL  416 (482)
Q Consensus       339 ~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  416 (482)
                      -|++  |..++.|.||                  +..+.                               +.        
T Consensus       401 Ei~sthG~s~n~i~lw------------------~~ps~-------------------------------~~--------  423 (484)
T KOG0305|consen  401 ELLSTHGYSENQITLW------------------KYPSM-------------------------------KL--------  423 (484)
T ss_pred             EEEEecCCCCCcEEEE------------------ecccc-------------------------------ce--------
Confidence            7765  4557788855                  44333                               22        


Q ss_pred             hHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         417 YEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                           ..          .+.+|...|..++++|||..++||+.|.++++|
T Consensus       424 ---------------------~~----------~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw  458 (484)
T KOG0305|consen  424 ---------------------VA----------ELLGHTSRVLYLALSPDGETIVTGAADETLRFW  458 (484)
T ss_pred             ---------------------ee----------eecCCcceeEEEEECCCCCEEEEecccCcEEec
Confidence                                 33          778999999999999999999999999999999

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.1e-31  Score=237.93  Aligned_cols=259  Identities=29%  Similarity=0.511  Sum_probs=223.1

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      ++.+.+|+......     .....+|...+.++.|+|++++|++++.||.|++|++.+++....+.        .|...+
T Consensus        30 ~g~i~i~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--------~~~~~i   96 (289)
T cd00200          30 DGTIKVWDLETGEL-----LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT--------GHTSYV   96 (289)
T ss_pred             CcEEEEEEeeCCCc-----EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe--------ccCCcE
Confidence            56777887654432     22334788999999999999999999999999999999875544443        346789


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  233 (482)
                      .++.|+|+++++++++.+|.+.+||+.+++....+ ..|...+.+++|+|++.++++++.++.|++||+++++.+..+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~  175 (289)
T cd00200          97 SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG  175 (289)
T ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec
Confidence            99999999888888888999999999988888887 57888999999999988888888899999999999999889998


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-C
Q psy8448         234 HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-G  312 (482)
Q Consensus       234 ~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~  312 (482)
                      |...+.+++|+|+++.+++++.++.|++||++.++....+.   .+...+.++.|+|++ .++++++.++.+++|++. +
T Consensus       176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCc
Confidence            99999999999999999999999999999999988777775   667799999999995 788888889999999994 6


Q ss_pred             cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         313 QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       313 ~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      +....+..+   ...+.+++|+|++++|++++.||.+++|+
T Consensus       252 ~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         252 ECVQTLSGH---TNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eeEEEcccc---CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            666666643   67899999999999999999999999774

>KOG0313|consensus

Probab=100.00  E-value=5.7e-32  Score=227.96  Aligned_cols=276  Identities=20%  Similarity=0.329  Sum_probs=226.1

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC---EEEEEeCCCcE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE---MLASGSQSGKV  174 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~---~l~~~~~dg~i  174 (482)
                      .|.+.|.++...  ++.+++|++||.+++||.. |+....+        .+|.++|.+++|.-.+.   .|++++.|.++
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~--------~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl  171 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTI--------VGHTGPIKSVAWVIKNSSSCLFVSASMDQTL  171 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEE--------ecCCcceeeeEEEecCCccceEEEecCCceE
Confidence            689999999888  7899999999999999964 5544443        34688999888865433   59999999999


Q ss_pred             EEEEcCCCeEeEEe---ecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC-------------------------CCc
Q psy8448         175 KIWKIATGQCLRKL---EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK-------------------------SGK  226 (482)
Q Consensus       175 ~iwd~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~-------------------------~~~  226 (482)
                      ++|.++.++.....   ..+|...|.++...++|.++++|+.|.+|.+|+..                         ++.
T Consensus       172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            99999877543221   14899999999999999999999999999999932                         123


Q ss_pred             eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         227 MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       227 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                      ++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.+...+    ..+..++++..+|.. .++++|+.|..|+
T Consensus       252 P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~----~~~ksl~~i~~~~~~-~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL----TTNKSLNCISYSPLS-KLLASGSSDRHIR  325 (423)
T ss_pred             ceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee----ecCcceeEeeccccc-ceeeecCCCCcee
Confidence            5667889999999999997 677999999999999999999988888    456789999999987 8999999999999


Q ss_pred             EEEcC---CcEE-EEecCCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecc
Q psy8448         307 IMNMQ---GQIV-RSLSSGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV  381 (482)
Q Consensus       307 i~d~~---~~~~-~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +||.+   +..+ .++.+|   ...|.++.|+|... .|++|+.|+++++                  ||+++.      
T Consensus       326 l~DPR~~~gs~v~~s~~gH---~nwVssvkwsp~~~~~~~S~S~D~t~kl------------------WDvRS~------  378 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGH---KNWVSSVKWSPTNEFQLVSGSYDNTVKL------------------WDVRST------  378 (423)
T ss_pred             ecCCCCCCCceeEEeeecc---hhhhhheecCCCCceEEEEEecCCeEEE------------------EEeccC------
Confidence            99994   3333 334443   67999999999865 4668999999995                  555444      


Q ss_pred             cccccceeccCCCcccchhccccccC-CCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceee
Q psy8448         382 DSVDGFIADINNGHWDTVLKSVQSLK-LPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIG  460 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  460 (482)
                                               + .                             .+          .+.+|.+.|.+
T Consensus       379 -------------------------k~p-----------------------------ly----------dI~~h~DKvl~  394 (423)
T KOG0313|consen  379 -------------------------KAP-----------------------------LY----------DIAGHNDKVLS  394 (423)
T ss_pred             -------------------------CCc-----------------------------ce----------eeccCCceEEE
Confidence                                     1 1                             44          77899999999


Q ss_pred             ccccCCcceEEEEecCceeecC
Q psy8448         461 LTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       461 ~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      +.|. ++.+++|||.|.+|+|+
T Consensus       395 vdW~-~~~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  395 VDWN-EGGLIVSGGADNKLRIF  415 (423)
T ss_pred             Eecc-CCceEEeccCcceEEEe
Confidence            9998 45689999999999985

>KOG0281|consensus

Probab=100.00  E-value=3.5e-33  Score=232.62  Aligned_cols=253  Identities=19%  Similarity=0.350  Sum_probs=208.0

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      +..+.+|+....     ....++.||++.|.|+.|.  .+.+++|+.|.+|+|||+++++.+.++..        |.+.|
T Consensus       216 DnTikiWD~n~~-----~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih--------HceaV  280 (499)
T KOG0281|consen  216 DNTIKIWDKNSL-----ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH--------HCEAV  280 (499)
T ss_pred             cCceEEeccccH-----HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh--------hccee
Confidence            334566664433     3344566999999999996  56999999999999999999987766543        57899


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE--eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQC--LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF  231 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  231 (482)
                      ..+.|+  +.++++++.|.++.+||+.....  ++....+|...|+.+.|+  .++|++++.|.+|++|++.+++.+.++
T Consensus       281 Lhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl  356 (499)
T KOG0281|consen  281 LHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTL  356 (499)
T ss_pred             EEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhh
Confidence            999997  55999999999999999976642  222237899999999995  569999999999999999999999999


Q ss_pred             eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         232 RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       232 ~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      .+|...|-|+.+  .++++++|+.|.+|++||+..|.+++.++   +|+.-|.++.|..   +.+++|..||.|++||+.
T Consensus       357 ~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRFd~---krIVSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  357 NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQ  428 (499)
T ss_pred             hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheeecC---ceeeeccccceEEEEecc
Confidence            999999999887  57899999999999999999999999888   9999999999976   679999999999999994


Q ss_pred             CcEEE-------EecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         312 GQIVR-------SLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       312 ~~~~~-------~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ...-.       .+.....|.+.|..+.|  |...+++++.|.+|.||++.
T Consensus       429 aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  429 AALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             cccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence            22111       11112234778999998  46789999999999966643

>KOG0293|consensus

Probab=100.00  E-value=2.6e-32  Score=232.36  Aligned_cols=278  Identities=17%  Similarity=0.248  Sum_probs=220.4

Q ss_pred             CCCCCceeeccC--CccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccc
Q psy8448          63 LLPPGTTIDLFR--GKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY  140 (482)
Q Consensus        63 ~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  140 (482)
                      +.+.|..++..+  -...+|....... ..+ ...+.+|..+|..+.||||.++|++|+.|..+.+||+.+|.....+..
T Consensus       232 FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl-~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~  309 (519)
T KOG0293|consen  232 FSHNGKYLASASKDSTAIIWIVVYDVH-FKL-KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS  309 (519)
T ss_pred             EcCCCeeEeeccCCceEEEEEEecCcc-eee-eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence            446666655543  3345555443333 333 344559999999999999999999999999999999999998766654


Q ss_pred             ccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448         141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH  220 (482)
Q Consensus       141 ~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~  220 (482)
                      .       |...+.+++|.|||..+++|+.|+++..||+.. ..+...+......|.+++..+||+++++.+.|..|+++
T Consensus       310 ~-------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~  381 (519)
T KOG0293|consen  310 G-------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLY  381 (519)
T ss_pred             C-------cCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeee
Confidence            3       246799999999999999999999999999864 44444433344569999999999999999999999999


Q ss_pred             eCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448         221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       221 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      +.++......+. ...+|++++.+.+++++++.-.+..+++||++....++.+...... .-+-.-+|-..+..++++|+
T Consensus       382 ~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~-~fiIrSCFgg~~~~fiaSGS  459 (519)
T KOG0293|consen  382 NREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG-HFIIRSCFGGGNDKFIASGS  459 (519)
T ss_pred             chhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc-ceEEEeccCCCCcceEEecC
Confidence            998776655444 4678999999999999999999999999999988877777632222 22333455554557999999


Q ss_pred             CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEeeh
Q psy8448         301 KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       301 ~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~~  355 (482)
                      .|+.|+||+. +|+++..+.+|   ...|.+++|+|.. ..+|++++||+|+||-..
T Consensus       460 ED~kvyIWhr~sgkll~~LsGH---s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  460 EDSKVYIWHRISGKLLAVLSGH---SKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CCceEEEEEccCCceeEeecCC---cceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            9999999999 79999999887   7889999999975 567899999999988654

>KOG0292|consensus

Probab=100.00  E-value=2.3e-32  Score=253.46  Aligned_cols=242  Identities=19%  Similarity=0.319  Sum_probs=216.0

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      +..+.+++|+|...+++++-..|.|++||.+.+..+..| ..|.++|+.++|+|.+..+++|+.|-.|++|+.++.+++.
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf   87 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF   87 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccceehh
Confidence            578999999999999999999999999999999999999 7999999999999999999999999999999999999999


Q ss_pred             EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         230 EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       230 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                      ++.+|-+.|..+.|++.-.++++++.|.+|+||+..+++++..+.   +|+..|.|..|+|.. .++++++-|.+|++||
T Consensus        88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt---GHnHYVMcAqFhptE-DlIVSaSLDQTVRVWD  163 (1202)
T KOG0292|consen   88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT---GHNHYVMCAQFHPTE-DLIVSASLDQTVRVWD  163 (1202)
T ss_pred             hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe---cCceEEEeeccCCcc-ceEEEecccceEEEEe
Confidence            999999999999999999999999999999999999999999998   999999999999987 8999999999999999


Q ss_pred             cCCcEEEEecC---------------------------CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhc
Q psy8448         310 MQGQIVRSLSS---------------------------GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESN  362 (482)
Q Consensus       310 ~~~~~~~~~~~---------------------------~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~  362 (482)
                      +.|-.......                           -.+|...|+-++|+|.-..+++|++|..|++|.+..      
T Consensus       164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne------  237 (1202)
T KOG0292|consen  164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE------  237 (1202)
T ss_pred             ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc------
Confidence            85421111110                           112467788999999999999999999999775541      


Q ss_pred             ccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCc
Q psy8448         363 LMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDP  442 (482)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (482)
                          .+.|...                                                                     
T Consensus       238 ----tKaWEvD---------------------------------------------------------------------  244 (1202)
T KOG0292|consen  238 ----TKAWEVD---------------------------------------------------------------------  244 (1202)
T ss_pred             ----ccceeeh---------------------------------------------------------------------
Confidence                1133322                                                                     


Q ss_pred             ccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         443 MIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       443 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                             +..+|.+.|+++-|+|...+++|.|+|++||||
T Consensus       245 -------tcrgH~nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  245 -------TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             -------hhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence                   667999999999999999999999999999999

>KOG0772|consensus

Probab=100.00  E-value=1e-31  Score=235.03  Aligned_cols=243  Identities=19%  Similarity=0.282  Sum_probs=186.2

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .+|+..|.++++.|.|-.|++|+.|.+|++||+......... +.......  ...|.++.|++.+..|++.+.....++
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~P~E--~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQLQPCE--THQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-hhccCccc--ccccceeeecCCCCeEEEEecCcceeE
Confidence            488899999999999999999999999999999754322111 11111111  357999999999999999988889999


Q ss_pred             EEcCCCeEeEEe------------ecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCce-EEEee-----ccccc
Q psy8448         177 WKIATGQCLRKL------------EKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKM-LKEFR-----GHSSF  237 (482)
Q Consensus       177 wd~~~~~~~~~~------------~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~-----~~~~~  237 (482)
                      +|- .|..+..+            .++|...++|.+|+|.. ..+++++.||++++||+...+. ...++     +..-+
T Consensus       241 ~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  241 LDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             Ecc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence            995 44333322            26788999999999954 5789999999999999987653 23332     34457


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc--ceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--Cc
Q psy8448         238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI--AVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQ  313 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~  313 (482)
                      ++.++|++++++|++|+.||.|.+|+..+......+..-..|..  .|++|.|+++| ++|++-+.|+++++||++  .+
T Consensus       320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeecccccc
Confidence            89999999999999999999999999866543333333335655  89999999999 899999999999999994  44


Q ss_pred             EEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      ++....... ...+-+.++|||+.++|++|+.
T Consensus       399 pL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  399 PLNVRTGLP-TPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             chhhhcCCC-ccCCCCccccCCCceEEEeccc
Confidence            554444322 2455678999999999999863

>KOG0288|consensus

Probab=100.00  E-value=8.5e-33  Score=235.34  Aligned_cols=285  Identities=18%  Similarity=0.291  Sum_probs=235.1

Q ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448          95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      .+..|.+.|..+.|-++...|++|+.|..|++|++...+.      .....+.+-.++|+.+.|.++++++++++.|+.+
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~  243 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL  243 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh------hhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence            3458999999999999989999999999999999876651      1122233335789999999999999999999999


Q ss_pred             EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      ++|++...+...++ .+|...|+++.|......+++|+.|.+|+.||+....+.+++. ....+..|+.+  ...+++|-
T Consensus       244 r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH  319 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGH  319 (459)
T ss_pred             eeeeccchhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecc
Confidence            99999999999998 6899999999998877679999999999999999988877765 34556677765  45688899


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc--ccCcCEEEEE
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK--REGGDFLCCT  332 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~  332 (482)
                      .|++|++||.++..+.....    ..+.|+++..++++ ..+++++.|.++.+.|+++..+.......  ......+.+.
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv~----~gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSVP----LGGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             cccceEEEeccCCceeeEee----cCcceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence            99999999999999888885    34599999999999 77888899999999999765544443221  1245678899


Q ss_pred             EcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchh
Q psy8448         333 TSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKK  412 (482)
Q Consensus       333 ~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  412 (482)
                      |||++.|+++||.||.|+                  +|++.++                               ++    
T Consensus       395 fSpd~~YvaAGS~dgsv~------------------iW~v~tg-------------------------------Kl----  421 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVY------------------IWSVFTG-------------------------------KL----  421 (459)
T ss_pred             ECCCCceeeeccCCCcEE------------------EEEccCc-------------------------------eE----
Confidence            999999999999999999                  7777777                               33    


Q ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCccee-c-ccceeeccccCCcceEEEEecCceeecC
Q psy8448         413 LIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEV-H-EKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h-~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                               ..          .+.. + ...|++++|+|.|..|++++.++.+.+|
T Consensus       422 -------------------------E~----------~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  422 -------------------------EK----------VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -------------------------EE----------EeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence                                     11          2222 2 2269999999999999999999999999

>KOG0268|consensus

Probab=100.00  E-value=1.2e-32  Score=230.61  Aligned_cols=276  Identities=17%  Similarity=0.232  Sum_probs=223.6

Q ss_pred             cCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          97 FGSKSHVECARFSPDG-QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      .||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..        |.+.|..+++..  ..+++++.|.+|+
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A--------H~G~V~Gi~v~~--~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA--------HEGLVRGICVTQ--TSFFTVGDDKTVK  132 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec--------ccCceeeEEecc--cceEEecCCccee
Confidence            5999999999999976 7899999999999999998776665554        478999999986  5789999999999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC-CEEEEEe
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG-HSVLSAS  254 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~  254 (482)
                      .|.+.. ..+.++.  ....+..+.-+..+..+++++.  .|.|||.+...++..+.-....|.++.|+|.. ..|+++.
T Consensus       133 ~wk~~~-~p~~til--g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~  207 (433)
T KOG0268|consen  133 QWKIDG-PPLHTIL--GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA  207 (433)
T ss_pred             eeeccC-Ccceeee--ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence            999865 4566652  4556777777767777888874  59999999999999998778889999999965 4566777


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEE
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCT  332 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~  332 (482)
                      .|+.|.+||++.+.++..+    .....-+.|+|+|.. ..|++++.|..++.||++  ..++....   .|...|.++.
T Consensus       208 sDrsIvLyD~R~~~Pl~KV----i~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~---dhvsAV~dVd  279 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKV----ILTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHK---DHVSAVMDVD  279 (433)
T ss_pred             cCCceEEEecccCCcccee----eeeccccceecCccc-cceeeccccccceehhhhhhcccchhhc---ccceeEEEec
Confidence            9999999999999988877    345566899999955 889999999999999995  34444443   4488999999


Q ss_pred             EcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchh
Q psy8448         333 TSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKK  412 (482)
Q Consensus       333 ~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  412 (482)
                      |+|.|+-+++||.|.+|+                  +|....+                               ..  +-
T Consensus       280 fsptG~EfvsgsyDksIR------------------If~~~~~-------------------------------~S--Rd  308 (433)
T KOG0268|consen  280 FSPTGQEFVSGSYDKSIR------------------IFPVNHG-------------------------------HS--RD  308 (433)
T ss_pred             cCCCcchhccccccceEE------------------EeecCCC-------------------------------cc--hh
Confidence            999999999999999999                  6666655                               11  00


Q ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         413 LIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                               .+           ...--+.|.++.||-|.++++|||+|+.||+|
T Consensus       309 -------------------------iY-----------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW  342 (433)
T KOG0268|consen  309 -------------------------IY-----------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLW  342 (433)
T ss_pred             -------------------------hh-----------hHhhhheeeEEEEeccccEEEecCCCcceeee
Confidence                                     00           00111349999999999999999999999999

>KOG0282|consensus

Probab=100.00  E-value=9.7e-33  Score=239.71  Aligned_cols=206  Identities=20%  Similarity=0.414  Sum_probs=182.0

Q ss_pred             cccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeE
Q psy8448         140 YQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV  217 (482)
Q Consensus       140 ~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i  217 (482)
                      ......+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++ .+|..+|..++|+.+|..+++++.|+.|
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccccCCeeeeeecceee
Confidence            334456788999999999999 899999999999999999977 7888888 7999999999999999999999999999


Q ss_pred             EEEeCCCCceEEEeeccccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEE
Q psy8448         218 RIHGLKSGKMLKEFRGHSSFVNDITFTADG-HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHF  296 (482)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  296 (482)
                      ++||+++|+++..+. ....++|+.|.|++ +.+++|+.|+.|+.||+++++.++.+.   .|-..|..+.|.+++ ..+
T Consensus       283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---~hLg~i~~i~F~~~g-~rF  357 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---RHLGAILDITFVDEG-RRF  357 (503)
T ss_pred             eeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---hhhhheeeeEEccCC-ceE
Confidence            999999999999987 46678999999998 889999999999999999999888887   788999999999999 899


Q ss_pred             EEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         297 VVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       297 ~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ++++.|++++||+.. .-.+.......  .....++..+|+++++++-+.|+.|.++.
T Consensus       358 issSDdks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  358 ISSSDDKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFS  413 (503)
T ss_pred             eeeccCccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEe
Confidence            999999999999994 44444443333  34557899999999999999999999554

>KOG0299|consensus

Probab=100.00  E-value=8.9e-31  Score=226.21  Aligned_cols=252  Identities=19%  Similarity=0.303  Sum_probs=214.1

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeec-ccc--------cccccc-ccccccEEEEEEcCCCC
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD-LKY--------QAQDNF-MLMEEAVMSLAYSRDSE  163 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~--------~~~~~~-~~h~~~i~~l~~~~~~~  163 (482)
                      .....|.-+|.|++++|++++.++++.+|+|.=|++.+++.... ++.        .+.... .+|...+.+++.++|++
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            44458999999999999999999999999999999998884411 111        111111 37889999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEE
Q psy8448         164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF  243 (482)
Q Consensus       164 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~  243 (482)
                      ||++|+.|..|.||+.++.+.+..+ .+|.+.|.+++|-.....+++++.|+.|++|+++....+.++.+|.+.|.+|..
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida  294 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA  294 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence            9999999999999999999999998 799999999999988888999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCc
Q psy8448         244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGK  322 (482)
Q Consensus       244 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~  322 (482)
                      ..-++.+.+|+.|+++++|++... ....+.   ++...+-|++|-.+  ..|++|+.+|.|.+|++ +.+++......+
T Consensus       295 L~reR~vtVGgrDrT~rlwKi~ee-sqlifr---g~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AH  368 (479)
T KOG0299|consen  295 LSRERCVTVGGRDRTVRLWKIPEE-SQLIFR---GGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAH  368 (479)
T ss_pred             hcccceEEeccccceeEEEecccc-ceeeee---CCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccc
Confidence            888888888889999999999543 233444   77888999999887  68999999999999999 667766665433


Q ss_pred             cc---------CcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         323 RE---------GGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       323 ~~---------~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      .-         ...|++++..|..+++++|+.+|.|++|
T Consensus       369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW  407 (479)
T KOG0299|consen  369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW  407 (479)
T ss_pred             cccCCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence            21         1278999999999999999999999944

>KOG0277|consensus

Probab=100.00  E-value=3.6e-31  Score=211.48  Aligned_cols=244  Identities=15%  Similarity=0.220  Sum_probs=203.9

Q ss_pred             ecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCc
Q psy8448          96 KFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGK  173 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~  173 (482)
                      .+.-.+.+..++|+++ .+.+++++.||+++|||+...       ..+...++.|..+|.++.|++ .++.+++++.|++
T Consensus        56 s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T  128 (311)
T KOG0277|consen   56 SYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT  128 (311)
T ss_pred             eeecccceeEeeecCCCcceEEEEecCceEEEeccCCC-------CcchhHHHhhhhheEEeccccccceeEEeeccCCc
Confidence            3456789999999994 577888999999999995432       234456667899999999999 6667888899999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC-CCCEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-DGHSVL  251 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~  251 (482)
                      |++|+...+..+.++ .+|...|...+|+| ....+++++.|+.+++||++..-....+..|...|.++.|+. +.+.++
T Consensus       129 iKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~  207 (311)
T KOG0277|consen  129 IKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA  207 (311)
T ss_pred             eEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence            999999999999998 78999999999999 567899999999999999997655555889999999999997 567788


Q ss_pred             EEeCCCcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-C-cEEEEecCCcccCcCE
Q psy8448         252 SASSDGTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-G-QIVRSLSSGKREGGDF  328 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~~~~~~~~v  328 (482)
                      +|+.|+.|+.||+++.+ ++..+   .+|...|..+.|+|....+|++++.|-+++|||.. + ..+.+...|   ..-+
T Consensus       208 Tg~vd~~vr~wDir~~r~pl~eL---~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H---tEFv  281 (311)
T KOG0277|consen  208 TGGVDNLVRGWDIRNLRTPLFEL---NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH---TEFV  281 (311)
T ss_pred             ecCCCceEEEEehhhccccceee---cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc---ceEE
Confidence            99999999999999865 33344   49999999999999988999999999999999994 3 333444432   5667


Q ss_pred             EEEEEcC-CCCEEEEEeCCcEEEEEe
Q psy8448         329 LCCTTSP-RGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       329 ~~~~~~~-~g~~l~~~~~dg~i~iw~  353 (482)
                      ..+.|++ ++.++|+.+.|+.++||+
T Consensus       282 ~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  282 CGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             eccccccccCceeeecccccceeeec
Confidence            7788876 467999999999999765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3e-30  Score=262.31  Aligned_cols=277  Identities=20%  Similarity=0.294  Sum_probs=215.6

Q ss_pred             CCCCCceeec--cCCcccccccccccccccc--ceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeec
Q psy8448          63 LLPPGTTIDL--FRGKAAMKDQEEEKYPTQL--SKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKD  137 (482)
Q Consensus        63 ~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~  137 (482)
                      +.++|..++.  .++.+.+|+..........  .......+...|.+++|+| ++.+|++++.||+|++||+.+++....
T Consensus       491 fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~  570 (793)
T PLN00181        491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE  570 (793)
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            3456655443  3566788875431110000  0011123457899999988 578999999999999999998776544


Q ss_pred             cccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCC
Q psy8448         138 LKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDT  215 (482)
Q Consensus       138 ~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg  215 (482)
                      +.        +|...|++++|+| ++.+|++|+.||.|++||+.++..+..+.  +...+.++.|++ ++.+|++|+.||
T Consensus       571 ~~--------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg  640 (793)
T PLN00181        571 MK--------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADH  640 (793)
T ss_pred             ec--------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCC
Confidence            43        4678999999997 78899999999999999999998888773  346799999954 789999999999


Q ss_pred             eEEEEeCCCCc-eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC------ceeeeeeccCCCccceeEEEE
Q psy8448         216 YVRIHGLKSGK-MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT------ECTSTFKSLGASDIAVNSIHL  288 (482)
Q Consensus       216 ~i~i~d~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~v~~i~~  288 (482)
                      .|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.|+.|++||++.+      .++..+.   +|...+..+.|
T Consensus       641 ~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~---gh~~~i~~v~~  716 (793)
T PLN00181        641 KVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM---GHTNVKNFVGL  716 (793)
T ss_pred             eEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---CCCCCeeEEEE
Confidence            99999998876 567788999999999997 6789999999999999999753      3445554   78889999999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecC----------CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         289 LPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSS----------GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       289 ~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~----------~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      +|++ .++++|+.|+.|++|+.. ...+..+..          ...+...|.+++|+|++..|++|+.||.|+||++
T Consensus       717 s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        717 SVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            9998 899999999999999983 332222110          0112456999999999999999999999998764

>KOG0310|consensus

Probab=100.00  E-value=9.9e-31  Score=227.64  Aligned_cols=237  Identities=23%  Similarity=0.375  Sum_probs=193.3

Q ss_pred             CCcEEEEEEcCCCCE-EEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         100 KSHVECARFSPDGQY-LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      .+.|.+++|+|...+ +|+.+ .-.+.||+..+.....++.-        ....+.+++|..||++|++|...|.|+++|
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~sr--------Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD   96 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSR--------FKDVVYSVDFRSDGRLLAAGDESGHVKVFD   96 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHh--------hccceeEEEeecCCeEEEccCCcCcEEEec
Confidence            468999999995433 44443 35699999877655443321        257899999999999999999999999999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCC-CCEEEEEeCC
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD-GHSVLSASSD  256 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d  256 (482)
                      +.+...++.+ ..|+.++..+.|+| ++..+++|+.|+.+++||+.+......+.+|++.|.|.+|+|. +..+++|+.|
T Consensus        97 ~k~r~iLR~~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD  175 (487)
T KOG0310|consen   97 MKSRVILRQL-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD  175 (487)
T ss_pred             cccHHHHHHH-hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence            7766666777 79999999999999 4567788999999999999988876789999999999999995 4578899999


Q ss_pred             CcEEEEECCCC-ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEc
Q psy8448         257 GTVKMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       257 g~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      |.|++||++.. ..+..+    .|..+|..+.+.|.| .++++++ .+.+++||+. |..+......  |...|+|+++.
T Consensus       176 g~vrl~DtR~~~~~v~el----nhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~qll~~~~~--H~KtVTcL~l~  247 (487)
T KOG0310|consen  176 GKVRLWDTRSLTSRVVEL----NHGCPVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQLLTSMFN--HNKTVTCLRLA  247 (487)
T ss_pred             ceEEEEEeccCCceeEEe----cCCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCceehhhhhc--ccceEEEEEee
Confidence            99999999987 555666    789999999999998 5666554 5689999994 5444333322  37889999999


Q ss_pred             CCCCEEEEEeCCcEEEEEee
Q psy8448         335 PRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       335 ~~g~~l~~~~~dg~i~iw~~  354 (482)
                      .++..|++|+-|+.+++|+.
T Consensus       248 s~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  248 SDSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             cCCceEeecccccceEEEEc
Confidence            99999999999999995554

>KOG0289|consensus

Probab=100.00  E-value=2.9e-30  Score=221.35  Aligned_cols=282  Identities=17%  Similarity=0.289  Sum_probs=240.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ...+.++...|..+.+++|+.|..+.++|..+++.+..++.        |...|+.+.++|+...+++++.|..|+||..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G--------h~kki~~v~~~~~~~~v~~aSad~~i~vws~  290 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG--------HTKKITSVKFHKDLDTVITASADEIIRVWSV  290 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC--------cceEEEEEEeccchhheeecCCcceEEeecc
Confidence            45788999998878999999999999999998887776654        4788999999999999999999999999998


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec--cccceeEEEEcCCCCEEEEEeCCC
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG--HSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      ......... ..|..+|+.+..+|.|.||++++.|++..+.|++++..+.....  ..-.+++.+|+|||..|.+|..||
T Consensus       291 ~~~s~~~~~-~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~  369 (506)
T KOG0289|consen  291 PLSSEPTSS-RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG  369 (506)
T ss_pred             ccccCcccc-ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc
Confidence            777665555 78999999999999999999999999999999999998776653  234589999999999999999999


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPR  336 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~  336 (482)
                      .|++||+.++.....|.   +|..+|..+.|+.+| .++++++.|+.|++||++ .+...++....  ...+.++.|++.
T Consensus       370 ~vkiwdlks~~~~a~Fp---ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~--~~~v~s~~fD~S  443 (506)
T KOG0289|consen  370 VVKIWDLKSQTNVAKFP---GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDE--KKEVNSLSFDQS  443 (506)
T ss_pred             eEEEEEcCCccccccCC---CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccc--cccceeEEEcCC
Confidence            99999999999888887   899999999999999 899999999999999994 44455554332  347899999999


Q ss_pred             CCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhh
Q psy8448         337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDL  416 (482)
Q Consensus       337 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  416 (482)
                      |.+|+.++.|=.|+                  ++.-.+.                                         
T Consensus       444 Gt~L~~~g~~l~Vy------------------~~~k~~k-----------------------------------------  464 (506)
T KOG0289|consen  444 GTYLGIAGSDLQVY------------------ICKKKTK-----------------------------------------  464 (506)
T ss_pred             CCeEEeecceeEEE------------------EEecccc-----------------------------------------
Confidence            99999998776666                  3332222                                         


Q ss_pred             hHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         417 YEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                 .|.++..+..|.+..+.+.|..+.++|+++|-|..++++
T Consensus       465 ---------------------------~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  465 ---------------------------SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             ---------------------------cceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence                                       233333777898899999999999999999999988874

>KOG0305|consensus

Probab=99.98  E-value=1.2e-30  Score=236.07  Aligned_cols=259  Identities=22%  Similarity=0.281  Sum_probs=219.4

Q ss_pred             CccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE
Q psy8448          75 GKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM  154 (482)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~  154 (482)
                      ..+.+|+......     ..+..-+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+...       |...|-
T Consensus       197 ~~vylW~~~s~~v-----~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-------h~~rvg  264 (484)
T KOG0305|consen  197 QSVYLWSASSGSV-----TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-------HASRVG  264 (484)
T ss_pred             ceEEEEecCCCce-----EEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-------cCceeE
Confidence            3566777655442     1122233889999999999999999999999999999887766665553       678999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc
Q psy8448         155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH  234 (482)
Q Consensus       155 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  234 (482)
                      +++|+  +..+.+|+.|+.|..+|++..+.......+|...|..++|++++.++++|+.|+.+.|||....+++..+..|
T Consensus       265 ~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H  342 (484)
T KOG0305|consen  265 SLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH  342 (484)
T ss_pred             EEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc
Confidence            99998  6689999999999999999887665534789999999999999999999999999999999888999999999


Q ss_pred             ccceeEEEEcC-CCCEEEEEe--CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEE-EeCCCeEEEEEc
Q psy8448         235 SSFVNDITFTA-DGHSVLSAS--SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVV-CNKTNTVVIMNM  310 (482)
Q Consensus       235 ~~~i~~l~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~-~~~d~~i~i~d~  310 (482)
                      ...|.+++|+| ....||+|+  .|+.|++||..++..+..+    .....|.++.|++...+++.+ |..++.|.||+.
T Consensus       343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY  418 (484)
T ss_pred             ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence            99999999999 556777764  5999999999999988887    568899999999998555554 556789999999


Q ss_pred             -CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         311 -QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       311 -~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                       .-+.+..+..|   ...|..++++|||..+++|+.|.++++|.+
T Consensus       419 ps~~~~~~l~gH---~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  419 PSMKLVAELLGH---TSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             cccceeeeecCC---cceeEEEEECCCCCEEEEecccCcEEeccc
Confidence             55666666665   788999999999999999999999998874

>KOG0313|consensus

Probab=99.98  E-value=4.8e-30  Score=216.43  Aligned_cols=266  Identities=19%  Similarity=0.298  Sum_probs=219.9

Q ss_pred             eccCCccccccccccccccccceeeecCCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEecCCCceeeccccccccccc
Q psy8448          71 DLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDG---QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM  147 (482)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  147 (482)
                      ..++|...+|+.....      ..+..||.++|.+++|....   ..|++++.|.++++|.++.++.....    .....
T Consensus       121 gsYDg~~riWd~~Gk~------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~----~~~~~  190 (423)
T KOG0313|consen  121 GSYDGTSRIWDLKGKS------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA----LKVCR  190 (423)
T ss_pred             eecCCeeEEEecCCce------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH----HhHhc
Confidence            3458888899876442      23344999999988885533   45999999999999999887754332    22334


Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------------------------CeEeEEeecccCCCeEEEEEc
Q psy8448         148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT-------------------------GQCLRKLEKAHSLGVTCIQFS  202 (482)
Q Consensus       148 ~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~~v~~i~~~  202 (482)
                      ||...|.+++..+++..+++|+.|.+|.||+..+                         +.++..+ .+|..+|.++.|+
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~w~  269 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVVWS  269 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEEEc
Confidence            8999999999999999999999999999999321                         1233444 6899999999999


Q ss_pred             cCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccc
Q psy8448         203 RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA  282 (482)
Q Consensus       203 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  282 (482)
                      + ...+++++.|.+|+.||+.++....++.+ ...++++..+|..++|++|+.|..+++||.+++.-...-..+.+|.+.
T Consensus       270 d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw  347 (423)
T KOG0313|consen  270 D-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW  347 (423)
T ss_pred             C-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence            7 66899999999999999999999888874 567899999999999999999999999999987543333334499999


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       283 v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      |.++.|+|....+|++++.|+++++||.+  ..++..+..+   ...|.++.|+ ++..|++|+.|..|+|+.
T Consensus       348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h---~DKvl~vdW~-~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH---NDKVLSVDWN-EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC---CceEEEEecc-CCceEEeccCcceEEEec
Confidence            99999999998999999999999999994  4478888776   7899999997 567999999999999653

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=3.2e-29  Score=235.60  Aligned_cols=250  Identities=12%  Similarity=0.168  Sum_probs=195.4

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccc-----ccccccccccccEEEEEEcC-CCCEEEEEeCCC
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY-----QAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSG  172 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg  172 (482)
                      |-..|+....++++..+++++.+.....|+...+..+..+..     .....+.+|.+.|++++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            345566777778877778888888888888665543221111     11234678999999999999 888999999999


Q ss_pred             cEEEEEcCCCe-------EeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEc
Q psy8448         173 KVKIWKIATGQ-------CLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFT  244 (482)
Q Consensus       173 ~i~iwd~~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~  244 (482)
                      +|++||+.++.       .+..+ .+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+.+|...|.+++|+
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s  177 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN  177 (493)
T ss_pred             EEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence            99999997652       34555 6899999999999975 689999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccc-eeEEEEcCCCCCEEEEEe----CCCeEEEEEcC--CcEEEE
Q psy8448         245 ADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA-VNSIHLLPKNTEHFVVCN----KTNTVVIMNMQ--GQIVRS  317 (482)
Q Consensus       245 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~~~~----~d~~i~i~d~~--~~~~~~  317 (482)
                      |++++|++++.|+.|++||+++++.+..+.   .|... ...+.|.+++ ..+++++    .|+.|++||++  ...+..
T Consensus       178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~  253 (493)
T PTZ00421        178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPYST  253 (493)
T ss_pred             CCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence            999999999999999999999998887776   55543 4567888887 4555433    47999999994  233333


Q ss_pred             ecCCcccCcCEEEEEEcCCCCEEEEEe-CCcEEEEEeeh
Q psy8448         318 LSSGKREGGDFLCCTTSPRGEWIYCVG-EDMVLVVRLIQ  355 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~~~  355 (482)
                      ...+.  ...+....|++++++|++++ .|+.|++|++.
T Consensus       254 ~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        254 VDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             eccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence            32221  34566678999999999887 59999977664

>KOG2096|consensus

Probab=99.98  E-value=7.4e-30  Score=210.52  Aligned_cols=308  Identities=19%  Similarity=0.253  Sum_probs=223.1

Q ss_pred             cccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEE
Q psy8448          79 MKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY  158 (482)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~  158 (482)
                      -|...+..+-..+....+.+|.+.|++++|+.||++||+++.|++|+||++++-.....-.... ...   -+..+.+.|
T Consensus        65 ~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve---~dhpT~V~F  140 (420)
T KOG2096|consen   65 QWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVE---YDHPTRVVF  140 (420)
T ss_pred             hhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-ccc---CCCceEEEE
Confidence            3444445555566667788999999999999999999999999999999998743221100000 000   135788999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEEcCCC---eEe--------EEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc
Q psy8448         159 SRDSEMLASGS-QSGKVKIWKIATG---QCL--------RKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK  226 (482)
Q Consensus       159 ~~~~~~l~~~~-~dg~i~iwd~~~~---~~~--------~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  226 (482)
                      .||.+-++... ...++++|.+...   ...        ..+...|...+..+-...++.+|++++.|..|.+|+++ |+
T Consensus       141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence            99887666554 4558999976432   111        12334566677777777788999999999999999998 99


Q ss_pred             eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC---Cc--eeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         227 MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT---TE--CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       227 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~---~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      .+..+......-+..+.+|+|+++++++..-.|++|.+--   |.  .+...-.+.+|...|..++|+++. ..+++.+.
T Consensus       220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSk  298 (420)
T KOG2096|consen  220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSK  298 (420)
T ss_pred             eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEec
Confidence            8988887777778889999999999999999999998632   21  222222344999999999999998 89999999


Q ss_pred             CCeEEEEEcC-----CcEEEEecCC----cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeee
Q psy8448         302 TNTVVIMNMQ-----GQIVRSLSSG----KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQE  372 (482)
Q Consensus       302 d~~i~i~d~~-----~~~~~~~~~~----~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  372 (482)
                      ||.+++||.+     ++-.+.+..+    +...+....++++|+|+.|+.+. ...+.                  ++..
T Consensus       299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~------------------~~~s  359 (420)
T KOG2096|consen  299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLK------------------VFAS  359 (420)
T ss_pred             CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceE------------------EEEc
Confidence            9999999984     2222222221    11133445899999999888544 45566                  6666


Q ss_pred             cccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcce
Q psy8448         373 ETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPE  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (482)
                      ++|+                              .+                             ..          .-.
T Consensus       360 e~g~------------------------------~~-----------------------------~~----------~e~  370 (420)
T KOG2096|consen  360 EDGK------------------------------DY-----------------------------PE----------LED  370 (420)
T ss_pred             ccCc------------------------------cc-----------------------------hh----------HHH
Confidence            6661                              01                             00          223


Q ss_pred             ecccceeeccccCCcceEEEEecCceeec
Q psy8448         453 VHEKLVIGLTHHPHQNLLGTYSEDGLLRF  481 (482)
Q Consensus       453 ~h~~~v~~~~~sp~~~~l~s~~~Dg~i~i  481 (482)
                      .|+..|++++|+|+|+++||++ |..+++
T Consensus       371 ~h~~~Is~is~~~~g~~~atcG-dr~vrv  398 (420)
T KOG2096|consen  371 IHSTTISSISYSSDGKYIATCG-DRYVRV  398 (420)
T ss_pred             hhcCceeeEEecCCCcEEeeec-ceeeee
Confidence            6999999999999999999999 777775

>KOG0973|consensus

Probab=99.97  E-value=7.3e-30  Score=243.09  Aligned_cols=250  Identities=22%  Similarity=0.296  Sum_probs=198.4

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEecCCCc----eeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448          98 GSKSHVECARFSPDGQYLITGS--VDGFIEVWNFTTGK----IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~--~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      .+...|.+++.+|||..+|||+  .||.++||+.+.--    ...............|.+.|+|+.|+|||++||+|+.|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            4566799999999999999999  89999999865311    11111112223455689999999999999999999999


Q ss_pred             CcEEEEEcCC------------------CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec
Q psy8448         172 GKVKIWKIAT------------------GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       172 g~i~iwd~~~------------------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  233 (482)
                      +.|.||....                  .+....+ .+|...|..++|+|++.++++++.|++|.+|+.++.+.+..+++
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~  169 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG  169 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence            9999999762                  1234455 68999999999999999999999999999999999999999999


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC---CCccceeEEEEcCCCCCEEEEEe----CCCeEE
Q psy8448         234 HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCN----KTNTVV  306 (482)
Q Consensus       234 ~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~----~d~~i~  306 (482)
                      |.+.|..+.|+|-|++|++-+.|++|++|++.+....+.+..+-   ....-+..+.|+|+| .+|++..    ...++.
T Consensus       170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~  248 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIA  248 (942)
T ss_pred             ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc-CeecchhhccCCcceeE
Confidence            99999999999999999999999999999977755555543221   234567889999999 7777643    234677


Q ss_pred             EEEc-CCcEEEEecCCcccCcCEEEEEEcCC-------------CC----EEEEEeCCcEEEEE
Q psy8448         307 IMNM-QGQIVRSLSSGKREGGDFLCCTTSPR-------------GE----WIYCVGEDMVLVVR  352 (482)
Q Consensus       307 i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~-------------g~----~l~~~~~dg~i~iw  352 (482)
                      |.+. +.+.-..+.+|   ..++.+++|+|.             ..    .+|+|+.|+.|-||
T Consensus       249 IieR~tWk~~~~LvGH---~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW  309 (942)
T KOG0973|consen  249 IIERGTWKVDKDLVGH---SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW  309 (942)
T ss_pred             EEecCCceeeeeeecC---CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence            7777 34445566665   679999999972             11    57789999999944

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.9e-29  Score=234.35  Aligned_cols=236  Identities=16%  Similarity=0.267  Sum_probs=185.3

Q ss_pred             eecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCC-CEEEEEeCCC
Q psy8448          95 IKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS-EMLASGSQSG  172 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~~~~~dg  172 (482)
                      ++.+|.+.|++++|+| ++++|++|+.|++|++||+.++...... ......+.+|...|.+++|+|++ ++|++++.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            3459999999999999 8899999999999999999875432111 12233566789999999999975 6999999999


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccc-eeEEEEcCCCCEEE
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSF-VNDITFTADGHSVL  251 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~l~~~~~~~~l~  251 (482)
                      .|++||+.+++....+ ..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..++
T Consensus       149 tVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv  227 (493)
T PTZ00421        149 VVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII  227 (493)
T ss_pred             EEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence            9999999999888887 678999999999999999999999999999999999999999888765 45678899888887


Q ss_pred             EEe----CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEc-CCcEEEEecCCcccC
Q psy8448         252 SAS----SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNM-QGQIVRSLSSGKREG  325 (482)
Q Consensus       252 ~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~-~~~~~~~~~~~~~~~  325 (482)
                      +++    .|+.|++||+++.......... .....+....|++++ .++++++ .|+.|++||+ +++........  ..
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~~--s~  303 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPYSTVDL-DQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSYS--SV  303 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCceeEecc-CCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeecc--CC
Confidence            654    4789999999876532222111 223455666788888 6777666 6999999999 45555443322  24


Q ss_pred             cCEEEEEEcCC
Q psy8448         326 GDFLCCTTSPR  336 (482)
Q Consensus       326 ~~v~~~~~~~~  336 (482)
                      .++..++|.|.
T Consensus       304 ~~~~g~~~~pk  314 (493)
T PTZ00421        304 EPHKGLCMMPK  314 (493)
T ss_pred             CCCcceEeccc
Confidence            56677888875

>KOG0973|consensus

Probab=99.97  E-value=4.4e-30  Score=244.59  Aligned_cols=303  Identities=19%  Similarity=0.303  Sum_probs=232.1

Q ss_pred             ccceeeChhHHHHHHHhHhhhhhccCCCCCCceeeccCCccccccccccc--cccccceeeecCCCCcEEEEEEcCCCCE
Q psy8448          37 GEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEK--YPTQLSKQIKFGSKSHVECARFSPDGQY  114 (482)
Q Consensus        37 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~  114 (482)
                      -++..+|++...+..+++.          +|+.. +|+-.....+.....  .|..+.  ....|.+.|+|+.|+|||++
T Consensus        17 fSIdv~pdg~~~aTgGq~~----------d~~~~-iW~~~~vl~~~~~~~~~l~k~l~--~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   17 FSIDVHPDGVKFATGGQVL----------DGGIV-IWSQDPVLDEKEEKNENLPKHLC--TMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             EEEEecCCceeEecCCccc----------cccce-eeccccccchhhhhhcccchhhe--eeccccCceeEEEECCCCCe
Confidence            3667788887777776643          11111 222222221211111  233332  33489999999999999999


Q ss_pred             EEEEeCCCeEEEEecCC----------CceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE
Q psy8448         115 LITGSVDGFIEVWNFTT----------GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC  184 (482)
Q Consensus       115 l~s~~~dg~v~iwd~~~----------~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~  184 (482)
                      ||+|+.|+.|.||+...          |.....-.......+.+|+..|..++|+|++.+|++++.|++|.+||..+.+.
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee
Confidence            99999999999999773          11222223334456788999999999999999999999999999999999988


Q ss_pred             eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc------ccceeEEEEcCCCCEEEEEeC---
Q psy8448         185 LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH------SSFVNDITFTADGHSVLSASS---  255 (482)
Q Consensus       185 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~l~~~~~~~~l~~~~~---  255 (482)
                      +..+ .+|.+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+      ......+.|+|||.+|++...   
T Consensus       164 ~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  164 LKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             eeee-ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence            8888 799999999999999999999999999999998887777666543      335788999999999998642   


Q ss_pred             -CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC--------C----CC----EEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448         256 -DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK--------N----TE----HFVVCNKTNTVVIMNM-QGQIVRS  317 (482)
Q Consensus       256 -dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~--------~----~~----~l~~~~~d~~i~i~d~-~~~~~~~  317 (482)
                       -..+.|.+-.+.+.-..+-   +|..++.++.|+|.        |    ..    .+++|+.|++|.||.. .-+++..
T Consensus       243 ~~~~~~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v  319 (942)
T KOG0973|consen  243 GKSTIAIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV  319 (942)
T ss_pred             CcceeEEEecCCceeeeeee---cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence             3468888877776666666   99999999999983        1    11    6788999999999998 4455544


Q ss_pred             ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhh
Q psy8448         318 LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYL  358 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~  358 (482)
                      ....  ....|..++|+|||..|+++|.||+|.+..+++..
T Consensus       320 i~~l--f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  320 IHNL--FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             hhhh--hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence            4333  26789999999999999999999999999887543

>KOG0643|consensus

Probab=99.97  E-value=1.1e-29  Score=204.56  Aligned_cols=241  Identities=22%  Similarity=0.320  Sum_probs=201.0

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-----C
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-----S  171 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-----d  171 (482)
                      .||++.|.|++.+.+.+.|++|+.|.++++||+++|+.+..++..         .+|..+.|+++|++++.+..     .
T Consensus        49 ~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---------~~Vk~~~F~~~gn~~l~~tD~~mg~~  119 (327)
T KOG0643|consen   49 DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN---------SPVKRVDFSFGGNLILASTDKQMGYT  119 (327)
T ss_pred             cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC---------CeeEEEeeccCCcEEEEEehhhcCcc
Confidence            499999999999999999999999999999999999999888765         68999999999998888753     4


Q ss_pred             CcEEEEEcC-------CCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce-EEEeeccccceeEEEE
Q psy8448         172 GKVKIWKIA-------TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM-LKEFRGHSSFVNDITF  243 (482)
Q Consensus       172 g~i~iwd~~-------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~l~~  243 (482)
                      +.|.++|++       ..++...+ ..+...++.+-|.|-++.|++|..||.|.+||+++++. +...+.|...|+.|++
T Consensus       120 ~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~  198 (327)
T KOG0643|consen  120 CFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF  198 (327)
T ss_pred             eEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccc
Confidence            689999997       44556666 56778999999999999999999999999999999854 5566789999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC---C--------
Q psy8448         244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ---G--------  312 (482)
Q Consensus       244 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~---~--------  312 (482)
                      +++..++++++.|.+-++||+++.++++++.    ...||++.+++|-. ..++.|+.....-+-...   |        
T Consensus       199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----te~PvN~aaisP~~-d~VilgGGqeA~dVTTT~~r~GKFEArFyh  273 (327)
T KOG0643|consen  199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----TERPVNTAAISPLL-DHVILGGGQEAMDVTTTSTRAGKFEARFYH  273 (327)
T ss_pred             cCCcceEEecccCccceeeeccceeeEEEee----ecccccceeccccc-ceEEecCCceeeeeeeecccccchhhhHHH
Confidence            9999999999999999999999999999994    57799999999987 445444433222221111   1        


Q ss_pred             ----cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         313 ----QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       313 ----~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                          +.+..+   +.|-++|++++|+|+|+..++|++||.|++.-++
T Consensus       274 ~i~eEEigrv---kGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  274 LIFEEEIGRV---KGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             HHHHHHhccc---cccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence                122233   3458999999999999999999999999987554

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.1e-28  Score=232.97  Aligned_cols=238  Identities=15%  Similarity=0.188  Sum_probs=182.7

Q ss_pred             eecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCE-EEEEeCCC
Q psy8448          95 IKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM-LASGSQSG  172 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~-l~~~~~dg  172 (482)
                      .+.+|.+.|.+++|+|+ +++||+|+.||+|+|||+.++.............+.+|...|.+++|+|++.. |++++.|+
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence            44599999999999996 78999999999999999986532111001122345678899999999998875 56889999


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEE-----EEcCCC
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDI-----TFTADG  247 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l-----~~~~~~  247 (482)
                      +|++||+++++....+.  +...|.+++|+|+|.+|++++.|+.|++||+++++.+.++.+|.+.+.+.     .|++++
T Consensus       149 tIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~  226 (568)
T PTZ00420        149 FVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD  226 (568)
T ss_pred             eEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence            99999999998777663  56789999999999999999999999999999999999999998765433     345888


Q ss_pred             CEEEEEeCCC----cEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc
Q psy8448         248 HSVLSASSDG----TVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK  322 (482)
Q Consensus       248 ~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  322 (482)
                      .+|++++.++    .|+|||+++ .+++..+. ...+...+. ..+.++.+.++++|+.|+.|++|++....+..+....
T Consensus       227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~  304 (568)
T PTZ00420        227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDNASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK  304 (568)
T ss_pred             CEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecCCccceE-EeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc
Confidence            9999988764    799999996 44554442 112222322 3344544488999999999999999655555555433


Q ss_pred             ccCcCEEEEEEcCCC
Q psy8448         323 REGGDFLCCTTSPRG  337 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g  337 (482)
                       +..+..+++|.|+.
T Consensus       305 -s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        305 -SCSPFRSFGFLPKQ  318 (568)
T ss_pred             -cCCCccceEEcccc
Confidence             36778899999974

>KOG1407|consensus

Probab=99.97  E-value=2.8e-29  Score=201.51  Aligned_cols=251  Identities=17%  Similarity=0.306  Sum_probs=217.8

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      +..+.+|..........   -...+|.+.|-.++|+| ..++|++++.|.+|++||++.++....+...         ..
T Consensus        41 dktv~v~n~e~~r~~~~---~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~---------~e  108 (313)
T KOG1407|consen   41 DKTVSVWNLERDRFRKE---LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK---------GE  108 (313)
T ss_pred             CCceEEEEecchhhhhh---hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc---------Cc
Confidence            66677777766633333   33459999999999999 6788999999999999999999988877655         23


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  232 (482)
                      =.-+.|+|+|.++++++.|..|.+.|.++.+.....+  ....+..++|+-++.+++.....|.|.|......+++..++
T Consensus       109 ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~  186 (313)
T KOG1407|consen  109 NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK  186 (313)
T ss_pred             ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc
Confidence            3457899999999999999999999999888777653  55568889999878888777778999999999999999999


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C
Q psy8448         233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q  311 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~  311 (482)
                      .|.....|+.|+|+|++|++|+.|..+.+||+...-|.+.+.   .++-+|..+.|+.+| ++|++++.|..|-|-+. +
T Consensus       187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vet  262 (313)
T KOG1407|consen  187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVET  262 (313)
T ss_pred             cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccCc-ceeeccCccceEEeEeccc
Confidence            999999999999999999999999999999999998888887   788999999999999 99999999999999988 7


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      |..+..+.-    .++...++|+|...+||.++.|
T Consensus       263 Gd~~~eI~~----~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  263 GDRVWEIPC----EGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             CCeEEEeec----cCCceeEEecCCCceeeEEecC
Confidence            888887764    6778999999999999987765

>KOG0264|consensus

Probab=99.97  E-value=9.1e-30  Score=219.98  Aligned_cols=265  Identities=17%  Similarity=0.268  Sum_probs=212.7

Q ss_pred             ccceeeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeecc--ccccccccccccccEEEEEEcCC-CCEE
Q psy8448          90 QLSKQIKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDL--KYQAQDNFMLMEEAVMSLAYSRD-SEML  165 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~h~~~i~~l~~~~~-~~~l  165 (482)
                      .........|.+.|+.+++-|. ...+|+++..+.|.|||..+-.-....  ...+...+.+|+..-++|+|++. .-.|
T Consensus       114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L  193 (422)
T KOG0264|consen  114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL  193 (422)
T ss_pred             ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence            3344455689999999999995 566677888899999998765433322  34555678889998899999994 4479


Q ss_pred             EEEeCCCcEEEEEcCCCeE------eEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCC--CCceEEEeecccc
Q psy8448         166 ASGSQSGKVKIWKIATGQC------LRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLK--SGKMLKEFRGHSS  236 (482)
Q Consensus       166 ~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~  236 (482)
                      ++++.|++|++||+.....      ......+|...|..++|++ +...+++++.|+.+.|||+|  +.++.....+|.+
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            9999999999999965432      2333478999999999999 55678899999999999999  5666777889999


Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--Cc
Q psy8448         237 FVNDITFTA-DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQ  313 (482)
Q Consensus       237 ~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~  313 (482)
                      .|.|++|+| ++..||+|+.|++|.+||+|+...  .+..+.+|...|.++.|+|....+|++++.|+.+.+||+.  +.
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence            999999999 556788899999999999998653  3333339999999999999998999999999999999993  22


Q ss_pred             ----------EEEEecCCcccCcCEEEEEEcCCCCEEE-EEeCCcEEEEEeehh
Q psy8448         314 ----------IVRSLSSGKREGGDFLCCTTSPRGEWIY-CVGEDMVLVVRLIQQ  356 (482)
Q Consensus       314 ----------~~~~~~~~~~~~~~v~~~~~~~~g~~l~-~~~~dg~i~iw~~~~  356 (482)
                                +...+..|.+|...|..+.|+|+..+++ +.++|+.+.||.+..
T Consensus       352 eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  352 EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                      2233445666789999999999988755 788999999887753

>KOG0294|consensus

Probab=99.97  E-value=5.5e-29  Score=205.16  Aligned_cols=267  Identities=21%  Similarity=0.328  Sum_probs=209.7

Q ss_pred             EEEEEeCCCeEEEEecCCCc----eeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee
Q psy8448         114 YLITGSVDGFIEVWNFTTGK----IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE  189 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  189 (482)
                      .+++|++...|.=+++.-..    ...+....+.-.+..|...|++++.+  +.++++|+.|-+|+|||++....+..+ 
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-
Confidence            36778877777766654322    11222233334556789999999996  889999999999999999999988888 


Q ss_pred             cccCCCeEEEEEccCCC--EEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy8448         190 KAHSLGVTCIQFSRDNS--QILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT  267 (482)
Q Consensus       190 ~~~~~~v~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~  267 (482)
                      ..|.+.|+++.|.+.-.  .|++|+.||.|.+|+....+++..+++|.+.|+.++.+|.+++-++.+.|+.+++||+-+|
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G  159 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG  159 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence            68999999999998664  8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         268 ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ-IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       268 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      +.....+.    ...-..+.|+|.| .+|+++..+ .|-+|.+... ....+..    ...+.++.|. ++..|++|++|
T Consensus       160 r~a~v~~L----~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~  228 (362)
T KOG0294|consen  160 RVAFVLNL----KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDN  228 (362)
T ss_pred             ccceeecc----CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCC
Confidence            86555532    2223449999999 666666655 5888988543 3333322    2446667665 56789999999


Q ss_pred             cEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHH
Q psy8448         347 MVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIE  426 (482)
Q Consensus       347 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  426 (482)
                      +.|.                  .||..++                               ..                  
T Consensus       229 ~~i~------------------~~D~ds~-------------------------------~~------------------  241 (362)
T KOG0294|consen  229 EWIS------------------LKDTDSD-------------------------------TP------------------  241 (362)
T ss_pred             ceEE------------------EeccCCC-------------------------------cc------------------
Confidence            9999                  5555544                               11                  


Q ss_pred             HHhhhhhhhhccccCcccccccCcceecccceeeccc--cCCcceEEEEecCceeecC
Q psy8448         427 LRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTH--HPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~l~s~~~Dg~i~iW  482 (482)
                                 ..          .+.+|..+|-++.+  .|++.+|+|+|.||.|+||
T Consensus       242 -----------~~----------~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vW  278 (362)
T KOG0294|consen  242 -----------LT----------EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVW  278 (362)
T ss_pred             -----------ce----------eeecchhheeeeEEEecCCceEEEEeccCceEEEE
Confidence                       22          67799999999985  4668899999999999999

>KOG0647|consensus

Probab=99.97  E-value=8.3e-29  Score=202.90  Aligned_cols=243  Identities=15%  Similarity=0.238  Sum_probs=190.5

Q ss_pred             ecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCC-ceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          96 KFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTG-KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      .....+.|.+|+||| ...++++|+.||+|++|+++.. ....       .....|+++|.+++|+.+|..+++|+.|+.
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~   95 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ   95 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-------hhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence            345678899999999 5566778999999999999874 3322       223346899999999999999999999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCC--EEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS--QILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      +++||+.+++... + ..|..+|.++.|-+...  .|++|+.|++|++||.++..++.++. ....+.++..  ....++
T Consensus        96 ~k~wDL~S~Q~~~-v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv--~~pm~v  170 (347)
T KOG0647|consen   96 AKLWDLASGQVSQ-V-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV--LYPMAV  170 (347)
T ss_pred             eEEEEccCCCeee-e-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc--cCceeE
Confidence            9999999996544 4 57999999999987554  79999999999999999999998887 4555666665  346788


Q ss_pred             EEeCCCcEEEEECCCCceeee-eeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-C--cEEEEecCCcc----
Q psy8448         252 SASSDGTVKMWNLKTTECTST-FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-G--QIVRSLSSGKR----  323 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~--~~~~~~~~~~~----  323 (482)
                      ++..+..|.+|+++++..... ...  ..+..+.+|+..++. ..++.|+-+|.+.+..++ +  +.-..+.-|..    
T Consensus       171 Vata~r~i~vynL~n~~te~k~~~S--pLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~  247 (347)
T KOG0647|consen  171 VATAERHIAVYNLENPPTEFKRIES--PLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV  247 (347)
T ss_pred             EEecCCcEEEEEcCCCcchhhhhcC--cccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence            899999999999987653322 221  345678999999988 667999999999999884 3  22222222221    


Q ss_pred             --cCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         324 --EGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       324 --~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                        .-..|.+++|+|.-..|++++.||++.+||
T Consensus       248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             CCceEEecceEeecccceEEEecCCceEEEec
Confidence              124577899999999999999999999664

>KOG0283|consensus

Probab=99.97  E-value=7.4e-30  Score=236.94  Aligned_cols=199  Identities=20%  Similarity=0.337  Sum_probs=163.8

Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------------------------------------------
Q psy8448         148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG---------------------------------------------  182 (482)
Q Consensus       148 ~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~---------------------------------------------  182 (482)
                      .|.+.|.++.|++||+|||+||.|+.|+||.+...                                             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            68999999999999999999999999999987550                                             


Q ss_pred             ---------------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC-C
Q psy8448         183 ---------------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-D  246 (482)
Q Consensus       183 ---------------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~-~  246 (482)
                                     ++++.+ .+|.+.|..+.|+.+ .+|++++.|.+|++|++...+++..|. |...|+|++|+| |
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD  421 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD  421 (712)
T ss_pred             CccccCCCccccccccchhhh-hccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence                           011112 579999999999965 589999999999999999999999998 999999999999 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecC-C----
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSS-G----  321 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~----  321 (482)
                      .++|++|+-||.|+||++...+.+.-.    ....-|++++|.|+| +..++|+.+|..++|+..+..+..-.. .    
T Consensus       422 DryFiSGSLD~KvRiWsI~d~~Vv~W~----Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~  496 (712)
T KOG0283|consen  422 DRYFISGSLDGKVRLWSISDKKVVDWN----DLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK  496 (712)
T ss_pred             CCcEeecccccceEEeecCcCeeEeeh----hhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence            899999999999999999887655544    445789999999998 899999999999999996544332211 1    


Q ss_pred             -cccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEee
Q psy8448         322 -KREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       322 -~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~  354 (482)
                       +.....|+.+.|.|.. ..|++.+.|..|+|+|.
T Consensus       497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             ccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence             1113379999999754 35888999999994443

>KOG0641|consensus

Probab=99.97  E-value=9.4e-28  Score=188.80  Aligned_cols=295  Identities=16%  Similarity=0.270  Sum_probs=229.3

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCC------ceeeccc-cccccccccccccEEEEEEcCCCCEEEEEeC
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTG------KIRKDLK-YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ  170 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~-~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~  170 (482)
                      ..+..|.+++|+|.|.+.+.|+..++.+|.....-      ......+ ......-..|.+.|.|.+|+|+|.+|++|+.
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence            56788999999999999999999999998754321      1111111 1111234568899999999999999999999


Q ss_pred             CCcEEEEEcCCCeEe-----EEeecccCCCeEEEEEccC----CCEEEEEE-CCCeEEEEeCCCCceEEEeeccccceeE
Q psy8448         171 SGKVKIWKIATGQCL-----RKLEKAHSLGVTCIQFSRD----NSQILTAS-FDTYVRIHGLKSGKMLKEFRGHSSFVND  240 (482)
Q Consensus       171 dg~i~iwd~~~~~~~-----~~~~~~~~~~v~~i~~~~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~  240 (482)
                      |.+|++..+....+.     ..+ .-|.+.|..++|..+    +..|++++ .|..|++-|...++..+.+.+|.+.|.+
T Consensus       110 dk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila  188 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA  188 (350)
T ss_pred             CceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence            999999877543321     233 458899999999653    44566544 4667888899999999999999999988


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC----CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEE
Q psy8448         241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIV  315 (482)
Q Consensus       241 l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~  315 (482)
                      +. +-++-.+++|+.|.+|++||++-..++.++....    -....|.+++..|.| +++++|-.|....+||++ ++.+
T Consensus       189 ly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~i  266 (350)
T KOG0641|consen  189 LY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI  266 (350)
T ss_pred             EE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCcee
Confidence            74 3467889999999999999999988887764321    223689999999999 899999999999999996 5667


Q ss_pred             EEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCc
Q psy8448         316 RSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGH  395 (482)
Q Consensus       316 ~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (482)
                      +.+..+   ...|.|+.|+|...++++++.|..|++                  -+++..                    
T Consensus       267 q~f~ph---sadir~vrfsp~a~yllt~syd~~ikl------------------tdlqgd--------------------  305 (350)
T KOG0641|consen  267 QRFHPH---SADIRCVRFSPGAHYLLTCSYDMKIKL------------------TDLQGD--------------------  305 (350)
T ss_pred             eeeCCC---ccceeEEEeCCCceEEEEecccceEEE------------------eecccc--------------------
Confidence            777655   789999999999999999999999994                  444322                    


Q ss_pred             ccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEec
Q psy8448         396 WDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSE  475 (482)
Q Consensus       396 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~  475 (482)
                                  +                                  ..-.++.....|.+.+..+.|+|..--+++.+.
T Consensus       306 ------------l----------------------------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssa  339 (350)
T KOG0641|consen  306 ------------L----------------------------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSA  339 (350)
T ss_pred             ------------h----------------------------------hhcCceEEEEeccCceEEEEecCccceeeeccC
Confidence                        0                                  000111155679999999999999988999999


Q ss_pred             CceeecC
Q psy8448         476 DGLLRFS  482 (482)
Q Consensus       476 Dg~i~iW  482 (482)
                      |.++.+|
T Consensus       340 dkt~tlw  346 (350)
T KOG0641|consen  340 DKTATLW  346 (350)
T ss_pred             cceEEEe
Confidence            9999998

>KOG0278|consensus

Probab=99.97  E-value=2.5e-30  Score=206.19  Aligned_cols=238  Identities=23%  Similarity=0.369  Sum_probs=209.8

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .||++.|.....+.+....|+++.|=+-+|||.-+|..+..+.         |..-|.+++|+.|.++|++|+.+..++|
T Consensus        56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~---------hkhivk~~af~~ds~~lltgg~ekllrv  126 (334)
T KOG0278|consen   56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE---------HKHIVKAVAFSQDSNYLLTGGQEKLLRV  126 (334)
T ss_pred             eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh---------hhheeeeEEecccchhhhccchHHHhhh
Confidence            3999999999999999999999999999999999998877765         4567999999999999999999999999


Q ss_pred             EEcCCCeE-eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC
Q psy8448         177 WKIATGQC-LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS  255 (482)
Q Consensus       177 wd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~  255 (482)
                      ||++..+. ...+ .+|.+.|..+.|....+.|++++.|++|++||.++++.++++. ...+|+++.++++|++|.++ .
T Consensus       127 fdln~p~App~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~  203 (334)
T KOG0278|consen  127 FDLNRPKAPPKEI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-Y  203 (334)
T ss_pred             hhccCCCCCchhh-cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-c
Confidence            99987654 4445 7899999999999988999999999999999999999999988 57789999999999966554 5


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEc
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      .+.|.+||..+...++.++    ....|.+...+|+. ..+++|+.|..++.||. +|..+..+.  ++|.++|.|+.|+
T Consensus       204 gssV~Fwdaksf~~lKs~k----~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~n--kgh~gpVhcVrFS  276 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLKSYK----MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYN--KGHFGPVHCVRFS  276 (334)
T ss_pred             CceeEEeccccccceeecc----CccccccccccCCC-ceEEecCcceEEEEEeccCCceeeecc--cCCCCceEEEEEC
Confidence            6779999999998888874    45678999999998 89999999999999999 687777753  3348999999999


Q ss_pred             CCCCEEEEEeCCcEEEEEe
Q psy8448         335 PRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       335 ~~g~~l~~~~~dg~i~iw~  353 (482)
                      |+|...++|++||+|++|.
T Consensus       277 PdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  277 PDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             CCCceeeccCCCceEEEEE
Confidence            9999999999999999553

>KOG0275|consensus

Probab=99.97  E-value=1.6e-30  Score=215.08  Aligned_cols=277  Identities=23%  Similarity=0.339  Sum_probs=234.4

Q ss_pred             CCCCceeec--cCCccccccccccccccccce---eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecc
Q psy8448          64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSK---QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDL  138 (482)
Q Consensus        64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  138 (482)
                      .|+|..+..  .+|.+.+|+....+....+.-   .-..-|..+|.|+.||.|...||+|+.||.|++|.+.+|.++..+
T Consensus       222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF  301 (508)
T KOG0275|consen  222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF  301 (508)
T ss_pred             CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh
Confidence            466665544  367788888765544332221   122367899999999999999999999999999999999998877


Q ss_pred             ccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEE
Q psy8448         139 KYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVR  218 (482)
Q Consensus       139 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~  218 (482)
                      ...       |+..|+|+.|+.|+..+++++.|.++++.-+++|+++..+ .+|.+.|+...|.++|.++++++.||+|+
T Consensus       302 drA-------HtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvk  373 (508)
T KOG0275|consen  302 DRA-------HTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVK  373 (508)
T ss_pred             hhh-------hccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEE
Confidence            644       6889999999999999999999999999999999999999 79999999999999999999999999999


Q ss_pred             EEeCCCCceEEEeec--cccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCE
Q psy8448         219 IHGLKSGKMLKEFRG--HSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       219 i~d~~~~~~~~~~~~--~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  295 (482)
                      +|+.++.+++.+++.  ...+|+++-.-| +...++++...++|.+.++. |+.++.+..-....+...+...+|.| .+
T Consensus       374 vW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG-ew  451 (508)
T KOG0275|consen  374 VWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG-EW  451 (508)
T ss_pred             EecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC-cE
Confidence            999999999998874  345677887777 44678888899999999975 67788876544556677788899999 89


Q ss_pred             EEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         296 FVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       296 l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      +.+.+.|+.++.|.. .|+.-.++..+   ...+..++-+|..+.|++-++||.+++|.
T Consensus       452 iYcigED~vlYCF~~~sG~LE~tl~Vh---EkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  452 IYCIGEDGVLYCFSVLSGKLERTLPVH---EKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEccCcEEEEEEeecCceeeeeecc---cccccccccCcccchhhhhcccchhhhcC
Confidence            999999999999999 77777777765   67788999999999999999999999763

>KOG0641|consensus

Probab=99.97  E-value=6.2e-28  Score=189.83  Aligned_cols=260  Identities=18%  Similarity=0.310  Sum_probs=210.9

Q ss_pred             ccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC----C
Q psy8448          86 KYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR----D  161 (482)
Q Consensus        86 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~----~  161 (482)
                      .+|..........|++.|.|.+|+|+|+++++|+.|++|++..++......   ......+.-|.+.|..++|-.    .
T Consensus        75 ~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~---~g~dle~nmhdgtirdl~fld~~~s~  151 (350)
T KOG0641|consen   75 KQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA---TGHDLEFNMHDGTIRDLAFLDDPESG  151 (350)
T ss_pred             cCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc---cCcceeeeecCCceeeeEEecCCCcC
Confidence            344333333445899999999999999999999999999998877544322   122234555789999999975    3


Q ss_pred             CCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec-------
Q psy8448         162 SEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG-------  233 (482)
Q Consensus       162 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------  233 (482)
                      +..|++++ .|..|++-|...++....+ .+|.+-|.++ ++-++-++++|+.|.+|++||++-..++.++..       
T Consensus       152 ~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl  229 (350)
T KOG0641|consen  152 GAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL  229 (350)
T ss_pred             ceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence            45677765 5778888899999999988 7899988876 333688999999999999999999988877642       


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q psy8448         234 HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ  313 (482)
Q Consensus       234 ~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~  313 (482)
                      ....|.+++..|.|++|++|-.|....+||++.++.++.+.   .|...|.++.|+|.. .++++++.|..|++-|+.|.
T Consensus       230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadir~vrfsp~a-~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccceeEEEeCCCc-eEEEEecccceEEEeecccc
Confidence            23579999999999999999999999999999999999988   899999999999987 89999999999999999775


Q ss_pred             EEEEecCC--cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         314 IVRSLSSG--KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       314 ~~~~~~~~--~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ....+...  ..|...+..+.|+|..-.+++.+.|.++.+|-+
T Consensus       306 la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  306 LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            44333211  123677889999999999999999999998854

>KOG1446|consensus

Probab=99.97  E-value=2.9e-28  Score=201.50  Aligned_cols=201  Identities=20%  Similarity=0.387  Sum_probs=174.9

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCce
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKM  227 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~  227 (482)
                      ...|+++.|+++|.++++++.|.++++||..+++.+..+ ..+...+..+.|......++.++.  |.+|+..++.+.+.
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            578999999999999999999999999999999999998 567778999999887777777766  88999999999999


Q ss_pred             EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEE
Q psy8448         228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI  307 (482)
Q Consensus       228 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i  307 (482)
                      ++.|.||...|.+++.+|-+..+++++.|++|++||++..++...+.   ..  .-..++|.|+| -+++++...+.|++
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~--~~pi~AfDp~G-LifA~~~~~~~IkL  166 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LS--GRPIAAFDPEG-LIFALANGSELIKL  166 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cC--CCcceeECCCC-cEEEEecCCCeEEE
Confidence            99999999999999999999999999999999999999888776665   22  22357899998 78888888789999


Q ss_pred             EEcC---CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeeccc
Q psy8448         308 MNMQ---GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETG  375 (482)
Q Consensus       308 ~d~~---~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  375 (482)
                      ||++   ..+...+............+.|+|||++|+.++..+.++                  +.+.-+|
T Consensus       167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~------------------~lDAf~G  219 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIY------------------LLDAFDG  219 (311)
T ss_pred             EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEE------------------EEEccCC
Confidence            9994   456666655544577889999999999999999999999                  7888887

>KOG0289|consensus

Probab=99.97  E-value=9.6e-29  Score=212.05  Aligned_cols=252  Identities=22%  Similarity=0.279  Sum_probs=214.0

Q ss_pred             cceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC
Q psy8448          91 LSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ  170 (482)
Q Consensus        91 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~  170 (482)
                      ..-.++.||+..|+.+.|+|+...+++++.|..|+||.........        ....|+++|+.+..+|.|.||++++.
T Consensus       252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~--------~~~~h~~~V~~ls~h~tgeYllsAs~  323 (506)
T KOG0289|consen  252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT--------SSRPHEEPVTGLSLHPTGEYLLSASN  323 (506)
T ss_pred             hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--------ccccccccceeeeeccCCcEEEEecC
Confidence            3335566999999999999999999999999999999987655332        23346899999999999999999999


Q ss_pred             CCcEEEEEcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         171 SGKVKIWKIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      ||...+.|++++..+...... ..-.+++.+|+|||..+.+|..|+.|+|||+.++..+..|.+|.++|..++|+.+|-+
T Consensus       324 d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~  403 (506)
T KOG0289|consen  324 DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYW  403 (506)
T ss_pred             CceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceE
Confidence            999999999999988776421 3356999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEE
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~  329 (482)
                      |+++++|+.|++||+|..+...++..  .....+.++.|.+.| .+++.++.+=.|++++...+....+.....+.+..+
T Consensus       404 Lat~add~~V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st  480 (506)
T KOG0289|consen  404 LATAADDGSVKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLST  480 (506)
T ss_pred             EEEEecCCeEEEEEehhhcccceeec--cccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccc
Confidence            99999999999999999888877764  334579999999999 788888888777777764443334433333467888


Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         330 CCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ++.|....+++++++.|..++++.
T Consensus       481 ~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  481 GVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             eeeecccceEEeeccchhheEEee
Confidence            999999999999999999988653

>KOG0310|consensus

Probab=99.97  E-value=1.5e-28  Score=214.15  Aligned_cols=236  Identities=23%  Similarity=0.352  Sum_probs=200.5

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKI  176 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~i  176 (482)
                      ..+..|.++.|-.||++||+|+..|.|+|||..+...+..        +.+|+.++....|+| ++..|++|+.|+.+++
T Consensus        66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~--------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~  137 (487)
T KOG0310|consen   66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ--------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY  137 (487)
T ss_pred             hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH--------HhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence            4578899999999999999999999999999665333333        334689999999999 4557778888999999


Q ss_pred             EEcCCCeEeEEeecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         177 WKIATGQCLRKLEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      ||+.+......+ .+|...|.|.+|+|. +.++++|+.||.|++||++.. ..+.++. |..+|..+.+-|.|..+++++
T Consensus       138 ~d~s~a~v~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg  215 (487)
T KOG0310|consen  138 WDLSTAYVQAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG  215 (487)
T ss_pred             EEcCCcEEEEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC
Confidence            999988874455 799999999999995 558899999999999999987 5666666 999999999999999998887


Q ss_pred             CCCcEEEEECCCCce-eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEE
Q psy8448         255 SDGTVKMWNLKTTEC-TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCT  332 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~  332 (482)
                      . ..|++||+.+|.. +..+.   .|...|+|+.+..++ ..|++++-|+.+++||. +-+.+..+..    .++|.+++
T Consensus       216 G-n~vkVWDl~~G~qll~~~~---~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~pvLsia  286 (487)
T KOG0310|consen  216 G-NSVKVWDLTTGGQLLTSMF---NHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKVVHSWKY----PGPVLSIA  286 (487)
T ss_pred             C-CeEEEEEecCCceehhhhh---cccceEEEEEeecCC-ceEeecccccceEEEEccceEEEEeeec----ccceeeEE
Confidence            5 4699999996653 33333   589999999999988 89999999999999997 5666666664    68999999


Q ss_pred             EcCCCCEEEEEeCCcEEEEE
Q psy8448         333 TSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       333 ~~~~g~~l~~~~~dg~i~iw  352 (482)
                      .+|+++.++.|..||.+.+-
T Consensus       287 vs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  287 VSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ecCCCceEEEecccceeeee
Confidence            99999999999999999866

>KOG0274|consensus

Probab=99.97  E-value=2.1e-28  Score=230.17  Aligned_cols=229  Identities=21%  Similarity=0.408  Sum_probs=200.3

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      .|...+.|..|.  ..++++++.|++|++||..++..+..       .+.+|.+.|.++++...+.+|++|+.|.++++|
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~-------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW  276 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT-------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW  276 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe-------eccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence            367788999998  56899999999999999998876544       234578999999999878899999999999999


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      |..++++...+ .+|...+.++...  ...+++|+.|.+|++|++.++..+..+.+|.++|.++..+  +.++++|+.|+
T Consensus       277 d~~sg~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~  351 (537)
T KOG0274|consen  277 DCSTGECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDG  351 (537)
T ss_pred             ecCCCcEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCc
Confidence            99999999999 6999999999884  4578888999999999999999999999999999999997  78999999999


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-C-cEEEEecCCcccCcCEEEEEEcC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-G-QIVRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~~~~~~~~v~~~~~~~  335 (482)
                      +|++||+.+++++..+.   +|...|.++.+.+.  ..+++|+.|+.|++||++ . +.+..+..+   ..-+..+.+  
T Consensus       352 ~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h---~~~v~~l~~--  421 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLS---GHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH---TSLVSSLLL--  421 (537)
T ss_pred             eEEEEEhhhceeeeeec---CCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCC---ccccccccc--
Confidence            99999999999999998   89999999988775  689999999999999995 4 466666655   444544444  


Q ss_pred             CCCEEEEEeCCcEEE
Q psy8448         336 RGEWIYCVGEDMVLV  350 (482)
Q Consensus       336 ~g~~l~~~~~dg~i~  350 (482)
                      .+++|++++.|+.|+
T Consensus       422 ~~~~Lvs~~aD~~Ik  436 (537)
T KOG0274|consen  422 RDNFLVSSSADGTIK  436 (537)
T ss_pred             ccceeEeccccccEE
Confidence            578999999999999

>KOG1408|consensus

Probab=99.97  E-value=7.7e-29  Score=225.20  Aligned_cols=319  Identities=18%  Similarity=0.268  Sum_probs=251.4

Q ss_pred             ccCCccccccccccccccccceeeecCCCCcEEEEEEcCC-----------CCEEEEEeCCCeEEEEecCCCceeeccc-
Q psy8448          72 LFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPD-----------GQYLITGSVDGFIEVWNFTTGKIRKDLK-  139 (482)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----------~~~l~s~~~dg~v~iwd~~~~~~~~~~~-  139 (482)
                      +.+-...+|+......+.+....+  -|...|+.+.--|.           ..-++|++.|++|++||+..+.--..+. 
T Consensus       343 YndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR  420 (1080)
T KOG1408|consen  343 YNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR  420 (1080)
T ss_pred             EcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence            345567889988777776665433  58888998887661           1347899999999999987632111100 


Q ss_pred             -----------ccc-----------------ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc
Q psy8448         140 -----------YQA-----------------QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA  191 (482)
Q Consensus       140 -----------~~~-----------------~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  191 (482)
                                 ...                 .....+-...+.+++.+|++++||+|..-|.++||++.+-+....+ ..
T Consensus       421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eA  499 (1080)
T KOG1408|consen  421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EA  499 (1080)
T ss_pred             ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ec
Confidence                       000                 0011122457999999999999999999999999999988888777 68


Q ss_pred             cCCCeEEEEEcc---CCCEEEEEECCCeEEEEeCCC-CceEEEeeccccceeEEEEcCCC--CEEEEEeCCCcEEEEECC
Q psy8448         192 HSLGVTCIQFSR---DNSQILTASFDTYVRIHGLKS-GKMLKEFRGHSSFVNDITFTADG--HSVLSASSDGTVKMWNLK  265 (482)
Q Consensus       192 ~~~~v~~i~~~~---~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~l~~~~~~--~~l~~~~~dg~i~i~d~~  265 (482)
                      |...|.|+.|+.   ..++|++++.|..|.+||+.. ..+++++.+|...|+++.|.-.|  ..+++++.|..|.+--..
T Consensus       500 HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~q  579 (1080)
T KOG1408|consen  500 HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ  579 (1080)
T ss_pred             ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhc
Confidence            999999999985   457899999999999999864 45678899999999999998877  678899988876543322


Q ss_pred             CCceeeeee--ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEE
Q psy8448         266 TTECTSTFK--SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYC  342 (482)
Q Consensus       266 ~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~  342 (482)
                      .......+.  ........+..++..|.. .++++++.|..|+||++ .|+..+.|.+.+.+.+....+...|.|.||++
T Consensus       580 k~~~g~~f~r~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~at  658 (1080)
T KOG1408|consen  580 KASSGRLFPRHTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLAT  658 (1080)
T ss_pred             cccCceeccccccccccceEEEeeeCCCc-ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEE
Confidence            111111111  111234678899999988 89999999999999999 79999999999988899999999999999999


Q ss_pred             EeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHH
Q psy8448         343 VGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVL  422 (482)
Q Consensus       343 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  422 (482)
                      .+.|.++.                  ++|..+|                               ++              
T Consensus       659 Scsdktl~------------------~~Df~sg-------------------------------Ec--------------  675 (1080)
T KOG1408|consen  659 SCSDKTLC------------------FVDFVSG-------------------------------EC--------------  675 (1080)
T ss_pred             eecCCceE------------------EEEeccc-------------------------------hh--------------
Confidence            99999999                  7777777                               33              


Q ss_pred             HHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         423 ELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                     +.          .+.||...|+.+.|.+|-+.|++.+.||.|+||
T Consensus       676 ---------------vA----------~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  676 ---------------VA----------QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             ---------------hh----------hhcCcchheeeeeecccchhheeecCCceEEEE
Confidence                           22          788999999999999999999999999999999

>KOG1036|consensus

Probab=99.97  E-value=6.4e-28  Score=198.52  Aligned_cols=238  Identities=16%  Similarity=0.308  Sum_probs=189.6

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      .....|..+.|+|.++.|++++.||++++||+........+.         |..++.+++|.++ ..+++|+.||.|+.+
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~---------~~~plL~c~F~d~-~~~~~G~~dg~vr~~   80 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK---------HGAPLLDCAFADE-STIVTGGLDGQVRRY   80 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee---------cCCceeeeeccCC-ceEEEeccCceEEEE
Confidence            446789999999999999999999999999998875544443         4689999999974 569999999999999


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      |+.++.....  ..|..++.|+.+++....+++|+.|+.|++||.+.......+. ....|.++...  ++.|++|+.+.
T Consensus        81 Dln~~~~~~i--gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r  155 (323)
T KOG1036|consen   81 DLNTGNEDQI--GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDR  155 (323)
T ss_pred             EecCCcceee--ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCc
Confidence            9998876554  4699999999999988899999999999999999865555555 34478888764  67899999999


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----cEEEEecCCc------ccCc
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG-----QIVRSLSSGK------REGG  326 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~------~~~~  326 (482)
                      .+.+||+++.......+ ...-+..+.++++.|.+ .-+++++-||.|.+=.++.     ..-..+.-|.      ....
T Consensus       156 ~v~iyDLRn~~~~~q~r-eS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  156 KVLIYDLRNLDEPFQRR-ESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             eEEEEEcccccchhhhc-cccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            99999999876544222 11456789999999966 6789999999988766532     1222222221      1245


Q ss_pred             CEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         327 DFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       327 ~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      +|.+++|+|--..+++|+.||.|.+|
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~W  259 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIW  259 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEc
Confidence            78999999999999999999999944

>KOG0772|consensus

Probab=99.97  E-value=8.6e-29  Score=216.80  Aligned_cols=288  Identities=16%  Similarity=0.201  Sum_probs=222.6

Q ss_pred             CCCCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccc
Q psy8448          62 GLLPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK  139 (482)
Q Consensus        62 ~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  139 (482)
                      ++-|.|..+..  ++..+.+|+...++...+..+++.-.....|++++|++.|..|++.+.....+|+|-...+......
T Consensus       174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~K  253 (641)
T KOG0772|consen  174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSK  253 (641)
T ss_pred             eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeec
Confidence            33455554443  3677899999998887777777777777899999999999999888888899999965444433332


Q ss_pred             cc----cccccccccccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEe-EEee----cccCCCeEEEEEccCCCEEE
Q psy8448         140 YQ----AQDNFMLMEEAVMSLAYSRD-SEMLASGSQSGKVKIWKIATGQCL-RKLE----KAHSLGVTCIQFSRDNSQIL  209 (482)
Q Consensus       140 ~~----~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~-~~~~----~~~~~~v~~i~~~~~~~~l~  209 (482)
                      ..    ...+..+|...++|.+|+|. ...+++++.||++++||+...+.. ..+.    .+..-+++.++|+++++.||
T Consensus       254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA  333 (641)
T KOG0772|consen  254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA  333 (641)
T ss_pred             cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence            22    22456789999999999994 458999999999999999765432 2221    23345689999999999999


Q ss_pred             EEECCCeEEEEeCCCCce---EEEeecccc--ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeeeeccCCCccce
Q psy8448         210 TASFDTYVRIHGLKSGKM---LKEFRGHSS--FVNDITFTADGHSVLSASSDGTVKMWNLKTTE-CTSTFKSLGASDIAV  283 (482)
Q Consensus       210 ~~~~dg~i~i~d~~~~~~---~~~~~~~~~--~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v  283 (482)
                      +|+.||.|.+|+......   ...-.+|..  .|+|+.|+++|++|++-+.|+++++||+++.+ ++.....+ ....+-
T Consensus       334 agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~  412 (641)
T KOG0772|consen  334 AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL-PTPFPG  412 (641)
T ss_pred             hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCC-CccCCC
Confidence            999999999999755432   233346766  89999999999999999999999999999854 34443322 344567


Q ss_pred             eEEEEcCCCCCEEEEEeC------CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         284 NSIHLLPKNTEHFVVCNK------TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       284 ~~i~~~~~~~~~l~~~~~------d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      +.++|+|+. +++++|+.      .|.+.+||. +-..+..+...   ...|..+.|+|.=+.|++|+.||.+++|--
T Consensus       413 tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  413 TDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---TASVVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             CccccCCCc-eEEEecccccCCCCCceEEEEeccceeeEEEecCC---CceEEEEeecchhhheeeecCCCceEEEEC
Confidence            889999998 88888764      478999998 56666666654   667889999999999999999999998743

>KOG0301|consensus

Probab=99.97  E-value=1.6e-28  Score=222.50  Aligned_cols=241  Identities=19%  Similarity=0.369  Sum_probs=205.4

Q ss_pred             ceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEE-EEEcC-CCCEEEEEe
Q psy8448          92 SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMS-LAYSR-DSEMLASGS  169 (482)
Q Consensus        92 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~-l~~~~-~~~~l~~~~  169 (482)
                      ..+.+.||+..|..+++.+.. .++++++||++++|+-..++.+.....      .+|.+.|.. +++-+ ++-.+++|+
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~------~~~~g~i~~~i~y~e~~~~~l~~g~   78 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAF------EGPKGFIANSICYAESDKGRLVVGG   78 (745)
T ss_pred             eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceec------ccCcceeeccceeccccCcceEeec
Confidence            345566999999999887654 788999999999999766654443322      234566666 77776 455699999


Q ss_pred             CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         170 QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      .|..|.+|.+.+..++..+ .+|...|.+++...++. +++|+.|.++++|-.  +++...+.+|...|.+++.-|++ .
T Consensus        79 ~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~  153 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-T  153 (745)
T ss_pred             ccceEEEEecCCCCchhhh-hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-c
Confidence            9999999999999999998 79999999999887776 999999999999975  66677799999999999999987 7


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEE
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~  329 (482)
                      +++|+.|.+|++|.-  ++.++++.   +|...|..+++.+++  .|++++.||.|++|+++|..+..+.+|   ..-+.
T Consensus       154 ~vTgsaDKtIklWk~--~~~l~tf~---gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~ge~l~~~~gh---tn~vY  223 (745)
T KOG0301|consen  154 YVTGSADKTIKLWKG--GTLLKTFS---GHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDGEVLLEMHGH---TNFVY  223 (745)
T ss_pred             EEeccCcceeeeccC--Cchhhhhc---cchhheeeeEEecCC--CeEeecCCceEEEEeccCceeeeeecc---ceEEE
Confidence            999999999999985  66777777   999999999999984  699999999999999999999988877   77889


Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         330 CCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ++....++..++++++|++++||..
T Consensus       224 sis~~~~~~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  224 SISMALSDGLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             EEEecCCCCeEEEecCCceEEEeec
Confidence            9998888899999999999996653

>KOG0288|consensus

Probab=99.97  E-value=5.4e-29  Score=212.30  Aligned_cols=261  Identities=20%  Similarity=0.303  Sum_probs=217.5

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      +-.+.+|+...+.   ......+.|..++|+.+.|.++++.+++++.|+.+++|++...+...++..        |++.|
T Consensus       196 Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG--------HtdkV  264 (459)
T KOG0288|consen  196 DRIIKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG--------HTDKV  264 (459)
T ss_pred             hhhhhhhhcccch---hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc--------cccce
Confidence            5556777765555   223344568889999999999999999999999999999998877666554        58999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  233 (482)
                      +++.|......+++|+.|.+|++||+....+..++.  ..+.+..|..+  ...+++|..|+.|++||+++..+..+...
T Consensus       265 t~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~  340 (459)
T KOG0288|consen  265 TAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL  340 (459)
T ss_pred             eeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEec--ceeeeecccccceEEEeccCCceeeEeec
Confidence            999999877779999999999999999988888764  34556667665  55788999999999999999999998886


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC-CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C
Q psy8448         234 HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG-ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q  311 (482)
Q Consensus       234 ~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~  311 (482)
                      +. .|+++..++++..+++++.|.++.+.|+++.+....+.-.. ......+.+.|+|++ .++++|+.||.|+||+. .
T Consensus       341 gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  341 GG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             Cc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccC
Confidence            55 89999999999999999999999999999988777775332 123458899999999 89999999999999999 5


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      ++....+..... ...|++++|+|.|..|++++.++.+.+|
T Consensus       419 gKlE~~l~~s~s-~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  419 GKLEKVLSLSTS-NAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ceEEEEeccCCC-CcceEEEEEcCCCchhhcccCCcceEec
Confidence            666666655432 3379999999999999999999999976

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.7e-27  Score=221.86  Aligned_cols=223  Identities=16%  Similarity=0.199  Sum_probs=173.0

Q ss_pred             EeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCe--------EeEEe
Q psy8448         118 GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQSGKVKIWKIATGQ--------CLRKL  188 (482)
Q Consensus       118 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~  188 (482)
                      |+.++.|++|+......        ...+.+|.+.|.+++|+|+ +++|++|+.||.|++||+.++.        .+..+
T Consensus        50 GG~~gvI~L~~~~r~~~--------v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L  121 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPP--------VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL  121 (568)
T ss_pred             CCceeEEEeeecCCCce--------EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence            55678899998765432        2234567899999999996 7899999999999999997642        22344


Q ss_pred             ecccCCCeEEEEEccCCCEE-EEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy8448         189 EKAHSLGVTCIQFSRDNSQI-LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT  267 (482)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~  267 (482)
                       .+|...|.+++|+|++..+ ++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||++++
T Consensus       122 -~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        122 -KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             -ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence             6789999999999988764 688999999999999998877776 6678999999999999999999999999999999


Q ss_pred             ceeeeeeccCCCccceeE-----EEEcCCCCCEEEEEeCC----CeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCC
Q psy8448         268 ECTSTFKSLGASDIAVNS-----IHLLPKNTEHFVVCNKT----NTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPR  336 (482)
Q Consensus       268 ~~~~~~~~~~~~~~~v~~-----i~~~~~~~~~l~~~~~d----~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~  336 (482)
                      +.+..+.   +|...+..     ..|++++ .++++++.+    +.|++||++  ++++..+... ...+.+......++
T Consensus       200 ~~i~tl~---gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~t  274 (568)
T PTZ00420        200 EIASSFH---IHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDEST  274 (568)
T ss_pred             cEEEEEe---cccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CCccceEEeeeCCC
Confidence            9888776   66655433     2345776 677777665    479999995  4555544322 22344444444566


Q ss_pred             CCEEEEEeCCcEEEEEeeh
Q psy8448         337 GEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       337 g~~l~~~~~dg~i~iw~~~  355 (482)
                      |.++++|+.|+.|++|++.
T Consensus       275 g~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        275 GLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             CCEEEEEECCCeEEEEEcc
Confidence            8999999999999987764

>KOG0640|consensus

Probab=99.97  E-value=1.5e-28  Score=202.09  Aligned_cols=284  Identities=20%  Similarity=0.314  Sum_probs=219.1

Q ss_pred             cCCCCCCceeeccCCcccccccccc---------------ccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q psy8448          61 QGLLPPGTTIDLFRGKAAMKDQEEE---------------KYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIE  125 (482)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~  125 (482)
                      ..+.++|..++..+.+..+.-...+               ..........++.|.++|+++.|+|....|++|+.|++|+
T Consensus       118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvK  197 (430)
T KOG0640|consen  118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVK  197 (430)
T ss_pred             eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEE
Confidence            3456888888887666554433221               1122234456779999999999999999999999999999


Q ss_pred             EEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee--cccCCCeEEEEEcc
Q psy8448         126 VWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE--KAHSLGVTCIQFSR  203 (482)
Q Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~  203 (482)
                      ++|+.+.....-++.-.      ...+|.++.|+|.|.+|++|..-.++++||+.+-++...-.  ..|.+.|+++.+++
T Consensus       198 lFDfsK~saKrA~K~~q------d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~  271 (430)
T KOG0640|consen  198 LFDFSKTSAKRAFKVFQ------DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS  271 (430)
T ss_pred             EEecccHHHHHHHHHhh------ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence            99998654433332221      14689999999999999999999999999999988765432  46889999999999


Q ss_pred             CCCEEEEEECCCeEEEEeCCCCceEEEee-ccc-cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCc-
Q psy8448         204 DNSQILTASFDTYVRIHGLKSGKMLKEFR-GHS-SFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASD-  280 (482)
Q Consensus       204 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-  280 (482)
                      .+++.++++.||.|++||--+++++.++. .|. ..|.+..|..+++++++.+.|..+++|.+.+++++..+....... 
T Consensus       272 t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgr  351 (430)
T KOG0640|consen  272 TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGR  351 (430)
T ss_pred             CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccc
Confidence            99999999999999999999999998875 454 469999999999999999999999999999999998887432111 


Q ss_pred             -cceeEEEEcCCCCCEEEE-EeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         281 -IAVNSIHLLPKNTEHFVV-CNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       281 -~~v~~i~~~~~~~~~l~~-~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                       .--+...|+... .+++. --..+.++-||.+ +..+..+..+  |.+.++.+.-+|.+.-+++++.|-.+++|-
T Consensus       352 q~~rtqAvFNhtE-dyVl~pDEas~slcsWdaRtadr~~l~slg--Hn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  352 QKHRTQAVFNHTE-DYVLFPDEASNSLCSWDARTADRVALLSLG--HNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             hhhhhhhhhcCcc-ceEEccccccCceeeccccchhhhhhcccC--CCCCceEEEeCCCCCceeeecccceeeeee
Confidence             112334455544 34433 3455789999994 4444444333  488999999999999999999999999774

>KOG0639|consensus

Probab=99.97  E-value=6e-29  Score=217.09  Aligned_cols=249  Identities=18%  Similarity=0.285  Sum_probs=207.9

Q ss_pred             cccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc---eeeccccccccccccccccEEEEEEcCCCC
Q psy8448          87 YPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGK---IRKDLKYQAQDNFMLMEEAVMSLAYSRDSE  163 (482)
Q Consensus        87 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~  163 (482)
                      .|....+.....|..-|.++.+|...+.+.||+. |.|+|||+....   .+..+...      .-...|.++...|||+
T Consensus       406 IPrharq~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl------~rdnyiRSckL~pdgr  478 (705)
T KOG0639|consen  406 IPRHARQINTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL------NRDNYIRSCKLLPDGR  478 (705)
T ss_pred             CCchHHhhhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccccc------CcccceeeeEecCCCc
Confidence            3444444445589999999999999999999985 789999997432   11222211      1256799999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEE
Q psy8448         164 MLASGSQSGKVKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDIT  242 (482)
Q Consensus       164 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~  242 (482)
                      .|++|+.-.++.|||+.........+ ....-.+.+++.+||.+..++++.||.|.|||+.+...++.|.+|.+.+.||.
T Consensus       479 tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId  558 (705)
T KOG0639|consen  479 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  558 (705)
T ss_pred             eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence            99999999999999997765433321 22234577899999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc
Q psy8448         243 FTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK  322 (482)
Q Consensus       243 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  322 (482)
                      +++||..|-+|+-|.+|+.||+++++.....    .....|.++..+|.+ ..+++|-..+.+.+...++.....+..+ 
T Consensus       559 is~dGtklWTGGlDntvRcWDlregrqlqqh----dF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~kyqlhlh-  632 (705)
T KOG0639|consen  559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQH----DFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEKYQLHLH-  632 (705)
T ss_pred             ecCCCceeecCCCccceeehhhhhhhhhhhh----hhhhhheecccCCCc-cceeeecccCcEEEEecCCccceeeccc-
Confidence            9999999999999999999999998876665    456789999999999 8999999999999998877766666655 


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         323 REGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                        ...|.++.|.+.|+++++.+.|+.+-
T Consensus       633 --eScVLSlKFa~cGkwfvStGkDnlLn  658 (705)
T KOG0639|consen  633 --ESCVLSLKFAYCGKWFVSTGKDNLLN  658 (705)
T ss_pred             --ccEEEEEEecccCceeeecCchhhhh
Confidence              78899999999999999999999999

>KOG0300|consensus

Probab=99.96  E-value=2.5e-28  Score=201.45  Aligned_cols=242  Identities=17%  Similarity=0.249  Sum_probs=209.0

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      +.||++.|..++-......+.+++.|.+.+||.+++++++..+..        |.+.|+++.|++.+.++++++.|++-.
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G--------H~GSVNsikfh~s~~L~lTaSGD~taH  215 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG--------HTGSVNSIKFHNSGLLLLTASGDETAH  215 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc--------cccceeeEEeccccceEEEccCCcchH
Confidence            459999999999998888999999999999999999998876654        579999999999999999999999999


Q ss_pred             EEEc------CC------------------------------C----eEeEEeecccCCCeEEEEEccCCCEEEEEECCC
Q psy8448         176 IWKI------AT------------------------------G----QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT  215 (482)
Q Consensus       176 iwd~------~~------------------------------~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg  215 (482)
                      ||..      ..                              +    .++..+ .+|...|.+..|-..|+.+++++.|.
T Consensus       216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-eccccceEehhhhcCcceeeeeeccc
Confidence            9961      10                              0    123344 57889999999999999999999999


Q ss_pred             eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCE
Q psy8448         216 YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       216 ~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  295 (482)
                      +-.+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.++||++.  .+.....+.+|...|+++.|..+  ..
T Consensus       295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~d--d~  370 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTD--DR  370 (481)
T ss_pred             cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecC--Cc
Confidence            999999999999999999999999999999999999999999999999984  34444445599999999999987  47


Q ss_pred             EEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         296 FVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       296 l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      +++|+.|.+|++||++  ..++.++..    ..++..++.+..+..|+.--++..|++||+
T Consensus       371 vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDL  427 (481)
T ss_pred             eeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEec
Confidence            9999999999999995  345666654    677889999988889999999999995544

>KOG0274|consensus

Probab=99.96  E-value=9.4e-28  Score=225.85  Aligned_cols=242  Identities=27%  Similarity=0.476  Sum_probs=210.9

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS  169 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~  169 (482)
                      .....-+.||.+.|.++++..-+.+|++|+.|.++++||..+|++...+..        |.+.+.++...  ..++++|+
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g--------h~stv~~~~~~--~~~~~sgs  308 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG--------HTSSVRCLTID--PFLLVSGS  308 (537)
T ss_pred             eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC--------CCceEEEEEcc--CceEeecc
Confidence            344443569999999999998888999999999999999999998887764        46788888875  44788899


Q ss_pred             CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         170 QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      .|.+|++|++.++..+..+ .+|..+|.++..+  +.++++|+.|+.|++||+.++++++++.+|...|.++.+.+. ..
T Consensus       309 ~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~  384 (537)
T KOG0274|consen  309 RDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NR  384 (537)
T ss_pred             CCceEEEEeccCcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ce
Confidence            9999999999999999998 5699999999997  789999999999999999999999999999999999988765 88


Q ss_pred             EEEEeCCCcEEEEECCCC-ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcC
Q psy8448         250 VLSASSDGTVKMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGD  327 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~  327 (482)
                      +++|+.|+.|++||+++. +++..+.   +|..-+..+.+..   .++++++.|+.|++||. +++.++.+...  +...
T Consensus       385 ~~Sgs~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~  456 (537)
T KOG0274|consen  385 LLSGSLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGG  456 (537)
T ss_pred             EEeeeeccceEeecCCchhhhhhhhc---CCccccccccccc---ceeEeccccccEEEeecccCceeeeeccC--Cccc
Confidence            999999999999999999 8888887   7887787666654   78999999999999999 68888888874  3577


Q ss_pred             EEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         328 FLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       328 v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +..+++.  ...+++++.||.+++||++
T Consensus       457 v~~l~~~--~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  457 VSALALG--KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             EEEeecC--cceEEEEecCCeeEEEecc
Confidence            8888776  5689999999999955444

>KOG0308|consensus

Probab=99.96  E-value=8.8e-29  Score=222.60  Aligned_cols=248  Identities=15%  Similarity=0.351  Sum_probs=208.3

Q ss_pred             CCCCcEE---EEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          98 GSKSHVE---CARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        98 ~h~~~v~---~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      .|...|.   .+..+. .+++|++|+.||.|++|++.......  .......+..|.+.|+.+....+++.|++++.|-+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~--s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT   96 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP--STPYIASMEHHSDWVNDIILCGNGKTLISASSDTT   96 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce
Confidence            3455555   555554 67789999999999999987543221  11134456778999999999999999999999999


Q ss_pred             EEEEEcCCC--eEeEEeecccCCCeEEEEE-ccCCCEEEEEECCCeEEEEeCCCCc--eEE--------Eee-cccccee
Q psy8448         174 VKIWKIATG--QCLRKLEKAHSLGVTCIQF-SRDNSQILTASFDTYVRIHGLKSGK--MLK--------EFR-GHSSFVN  239 (482)
Q Consensus       174 i~iwd~~~~--~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~~--------~~~-~~~~~i~  239 (482)
                      |++|+...+  -++..+ ..|...|.|+++ .++...+++|+.|+.|.+||+.++.  .+.        .+. ++..+|.
T Consensus        97 VK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY  175 (735)
T KOG0308|consen   97 VKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY  175 (735)
T ss_pred             EEEeecccCcchhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence            999998776  456666 789999999999 7788899999999999999999772  222        222 7888999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448         240 DITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL  318 (482)
Q Consensus       240 ~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~  318 (482)
                      +++.++.|..|++|+.++.+++||.++.+.+..++   +|...|..+..+++| ..+++++.||+|++||+ ..+.+.++
T Consensus       176 SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             eeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeE
Confidence            99999999999999999999999999999988888   999999999999999 89999999999999999 56777777


Q ss_pred             cCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         319 SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       319 ~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ..|   ...++++..+|+=..+++|+.||.|+.=+++
T Consensus       252 ~vH---~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  252 IVH---KEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             Eec---cCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            766   5569999999999999999999999944443

>KOG1539|consensus

Probab=99.96  E-value=2e-27  Score=219.80  Aligned_cols=351  Identities=19%  Similarity=0.222  Sum_probs=256.2

Q ss_pred             eccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccc
Q psy8448          71 DLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME  150 (482)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~  150 (482)
                      ....|...+|+....+.-.     ...++.+.|+++.=+|--+.+|.|..+|+|.|+|++.++.+..++..        .
T Consensus       178 Gs~~G~lql~Nvrt~K~v~-----~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d--------~  244 (910)
T KOG1539|consen  178 GSSQGRLQLWNVRTGKVVY-----TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD--------W  244 (910)
T ss_pred             eecCCcEEEEEeccCcEEE-----EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc--------c
Confidence            3457888888876554433     33478899999999998889999999999999999999998887754        3


Q ss_pred             ccEEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC----
Q psy8448         151 EAVMSLAYSRDSEM-LASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG----  225 (482)
Q Consensus       151 ~~i~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~----  225 (482)
                      +.|+.++|.-||+. +++|+..|.+.+||++..+.+..+...|.+.+....|.|....+++++.|+.+++|=.+++    
T Consensus       245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p  324 (910)
T KOG1539|consen  245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP  324 (910)
T ss_pred             cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence            78999999999875 5556677999999999999888887789999999999999999999999998888865543    


Q ss_pred             ceEEEeeccccceeEEEEc-CCCCEEEEEeCCCcEEEEECCCC-------c--------ee-------------ee----
Q psy8448         226 KMLKEFRGHSSFVNDITFT-ADGHSVLSASSDGTVKMWNLKTT-------E--------CT-------------ST----  272 (482)
Q Consensus       226 ~~~~~~~~~~~~i~~l~~~-~~~~~l~~~~~dg~i~i~d~~~~-------~--------~~-------------~~----  272 (482)
                      +.++.-.+|..+..|+.|. .++..+.+++.|++++.+++...       +        ..             ..    
T Consensus       325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~  404 (910)
T KOG1539|consen  325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE  404 (910)
T ss_pred             hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence            3455566899999999987 57788888888887777764210       0        00             00    


Q ss_pred             ----------------------------------ee--ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEE
Q psy8448         273 ----------------------------------FK--SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIV  315 (482)
Q Consensus       273 ----------------------------------~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~  315 (482)
                                                        +.  ........+++++.++-| ++.+.|+..|.|-+|++ .|-..
T Consensus       405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r  483 (910)
T KOG1539|consen  405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHR  483 (910)
T ss_pred             cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeee
Confidence                                              00  000123567888888888 89999999999999999 46556


Q ss_pred             EEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCc
Q psy8448         316 RSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGH  395 (482)
Q Consensus       316 ~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (482)
                      ..+.....|..+|+.++.+.-++.+++++.+|.+.+|++.......       -|++...  +..+..+ .....++..+
T Consensus       484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-------~l~l~~~--~~~iv~h-r~s~l~a~~~  553 (910)
T KOG1539|consen  484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-------SLRLGSS--ITGIVYH-RVSDLLAIAL  553 (910)
T ss_pred             cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-------eeccCCC--cceeeee-ehhhhhhhhc
Confidence            6665555668999999999999999999999999988776433111       1111111  0000000 0000122222


Q ss_pred             ccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEec
Q psy8448         396 WDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSE  475 (482)
Q Consensus       396 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~  475 (482)
                      .+-.++..                                     |..|...+..+.||.+.|++++|||||++|++++-
T Consensus       554 ddf~I~vv-------------------------------------D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm  596 (910)
T KOG1539|consen  554 DDFSIRVV-------------------------------------DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM  596 (910)
T ss_pred             CceeEEEE-------------------------------------EchhhhhhHHhhccccceeeeEeCCCCcEEEEeec
Confidence            22222221                                     11222223388899999999999999999999999


Q ss_pred             CceeecC
Q psy8448         476 DGLLRFS  482 (482)
Q Consensus       476 Dg~i~iW  482 (482)
                      |++||+|
T Consensus       597 D~tIr~w  603 (910)
T KOG1539|consen  597 DSTIRTW  603 (910)
T ss_pred             CCcEEEE
Confidence            9999999

>KOG0294|consensus

Probab=99.96  E-value=3.2e-27  Score=194.79  Aligned_cols=239  Identities=16%  Similarity=0.252  Sum_probs=198.8

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC--EEEEEeCCCcE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE--MLASGSQSGKV  174 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~--~l~~~~~dg~i  174 (482)
                      ..|.++|++++.+  +.++|+|+.|-+|+|||+.+......+.        .|.+.|+++.|.+...  .|++|+.||.|
T Consensus        40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll--------~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL--------SHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             cccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee--------ccccceEEEEecCCcchhheeeecCCCcE
Confidence            4899999999996  8999999999999999999866554443        3578999999999664  89999999999


Q ss_pred             EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      .+|+......+..+ ++|...|+.++.+|.++..++.+.|+.++.||+-.|+.-..++ -....+.+.|+|.|.+++.+.
T Consensus       110 ~iw~~~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  110 IIWRVGSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             EEEEcCCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEe
Confidence            99999999888888 7999999999999999999999999999999999988665554 233345599999999999888


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEE
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTT  333 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~  333 (482)
                      .++ |-+|.+.+......+.    ....+.++.|...  ..+++|..++.|.+||.+ ..++..+..|   ..+|-.+.+
T Consensus       188 ~~~-i~i~q~d~A~v~~~i~----~~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~~~~~~~AH---~~RVK~i~~  257 (362)
T KOG0294|consen  188 RNK-IDIYQLDNASVFREIE----NPKRILCATFLDG--SELLVGGDNEWISLKDTDSDTPLTEFLAH---ENRVKDIAS  257 (362)
T ss_pred             ccE-EEEEecccHhHhhhhh----ccccceeeeecCC--ceEEEecCCceEEEeccCCCccceeeecc---hhheeeeEE
Confidence            765 9999998876655553    2345667776654  689999999999999995 6666666665   677887773


Q ss_pred             --cCCCCEEEEEeCCcEEEEEeehhh
Q psy8448         334 --SPRGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       334 --~~~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                        .|++.+|++++.||.|++||++..
T Consensus       258 ~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  258 YTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EecCCceEEEEeccCceEEEEEcccc
Confidence              567899999999999999998744

>KOG1274|consensus

Probab=99.96  E-value=7.4e-27  Score=218.41  Aligned_cols=247  Identities=22%  Similarity=0.324  Sum_probs=206.1

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCC-ceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTG-KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      .++|+..-+.++|.|+|++|.+++.||.|++|+..+. +....+..        +...|.+++..  +.+|++|+.+++|
T Consensus         9 Ryaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--------~g~~v~~ia~~--s~~f~~~s~~~tv   78 (933)
T KOG1274|consen    9 RYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--------SGELVSSIACY--SNHFLTGSEQNTV   78 (933)
T ss_pred             hhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc--------cCceeEEEeec--ccceEEeeccceE
Confidence            3589999999999999999999999999999998765 33222221        34667777664  5599999999999


Q ss_pred             EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      .+|.+.+++.-..+ ....-++++++|+.+|++++.|+.|-.|++.+..+......+++|.++|.++.|+|++++|++.+
T Consensus        79 ~~y~fps~~~~~iL-~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss  157 (933)
T KOG1274|consen   79 LRYKFPSGEEDTIL-ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS  157 (933)
T ss_pred             EEeeCCCCCcccee-eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe
Confidence            99999887655444 34567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCC-----ccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCE
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGAS-----DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDF  328 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v  328 (482)
                      .||.|++||+.++.+..++......     ...+..++|+|++ ..+++.+.|+.|++|+. .+.....+..... ...+
T Consensus       158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~-ss~~  235 (933)
T KOG1274|consen  158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRDKLS-SSKF  235 (933)
T ss_pred             cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeeccccc-ccce
Confidence            9999999999998877766543321     3556789999998 67788888999999999 4566666654433 3448


Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         329 LCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       329 ~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      .+++|+|+|+|||+++.||.|.||+++
T Consensus       236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  236 SDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             EEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            999999999999999999999977665

>KOG1332|consensus

Probab=99.96  E-value=3.5e-28  Score=193.33  Aligned_cols=252  Identities=21%  Similarity=0.270  Sum_probs=201.1

Q ss_pred             eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeC
Q psy8448          93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQ  170 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~  170 (482)
                      +.+...|.+-|..+...-.|++|||++.|++|+|+.+++...     ......+.+|+++|..++|..  .|.+||++++
T Consensus         4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY   78 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSY   78 (299)
T ss_pred             eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----ceeeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence            445568999999998888899999999999999999987653     233456778999999999976  8999999999


Q ss_pred             CCcEEEEEcCCCeEeE--EeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCC---ceEEEeeccccceeEEEE
Q psy8448         171 SGKVKIWKIATGQCLR--KLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSG---KMLKEFRGHSSFVNDITF  243 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~l~~  243 (482)
                      ||.|.||.-++++-.+  .. ..|...|++++|.|.  |-.|++++.||.|.|.+.++.   ...+....|.-.|++++|
T Consensus        79 DgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   79 DGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             CceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence            9999999987774322  23 568999999999995  578899999999999988765   223445679999999999


Q ss_pred             cCC---C-----------CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC---CCEEEEEeCCCeEE
Q psy8448         244 TAD---G-----------HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN---TEHFVVCNKTNTVV  306 (482)
Q Consensus       244 ~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d~~i~  306 (482)
                      .|-   |           +.|++|+.|..|+||+..+++-+.. ..+.+|...|+.++|.|.-   ...+++++.||++.
T Consensus       158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi  236 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI  236 (299)
T ss_pred             cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence            984   4           5699999999999999988632211 1133899999999999964   35789999999999


Q ss_pred             EEEcCC--cE-EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         307 IMNMQG--QI-VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       307 i~d~~~--~~-~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ||..+.  .. ..++...  -...+..+.|+..|+.|+.++.|+.+.+|.
T Consensus       237 Iwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             EEEecCccCccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            998842  11 1111111  256789999999999999999999999663

>KOG0650|consensus

Probab=99.96  E-value=9.3e-28  Score=214.01  Aligned_cols=291  Identities=20%  Similarity=0.304  Sum_probs=227.1

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC--EEEEEeCC
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE--MLASGSQS  171 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~--~l~~~~~d  171 (482)
                      .+..||++.|.|+...|.|.+||+|+.||+|+||.+.+|.++..+...         +.|.|++|+|.++  .||++- .
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---------~~I~~vaw~P~~~~~vLAvA~-~  463 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---------SEIRSVAWNPLSDLCVLAVAV-G  463 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---------ceeEEEEecCCCCceeEEEEe-c
Confidence            445699999999999999999999999999999999999999888765         6799999999654  344433 3


Q ss_pred             CcEEEEEcCCC------------------------------------e-EeEEeecccCCCeEEEEEccCCCEEEEEECC
Q psy8448         172 GKVKIWKIATG------------------------------------Q-CLRKLEKAHSLGVTCIQFSRDNSQILTASFD  214 (482)
Q Consensus       172 g~i~iwd~~~~------------------------------------~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d  214 (482)
                      ..+.|.+..-|                                    + .++. ...|...|..+.|+..|.||++...+
T Consensus       464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~-~I~~~k~i~~vtWHrkGDYlatV~~~  542 (733)
T KOG0650|consen  464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI-VIKHPKSIRQVTWHRKGDYLATVMPD  542 (733)
T ss_pred             CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE-EEecCCccceeeeecCCceEEEeccC
Confidence            33444442111                                    0 0111 13577889999999999999987654


Q ss_pred             ---CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC
Q psy8448         215 ---TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK  291 (482)
Q Consensus       215 ---g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~  291 (482)
                         ..|.|+++...+....|+...+.|.++.|+|...+|++++. ..|++||+...+.++.+.   .....|..++++|.
T Consensus       543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~---tg~kwiS~msihp~  618 (733)
T KOG0650|consen  543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL---TGSKWISSMSIHPN  618 (733)
T ss_pred             CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh---cCCeeeeeeeecCC
Confidence               47999999887777777767888999999999999988876 569999999887777765   55678999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhccccccee
Q psy8448         292 NTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQC  369 (482)
Q Consensus       292 ~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  369 (482)
                      | ..+++++.|+.+..+|+.  .++.+++..|   ...+++++|++.-.++++|+.||.+.|+--.             +
T Consensus       619 G-Dnli~gs~d~k~~WfDldlsskPyk~lr~H---~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~-------------V  681 (733)
T KOG0650|consen  619 G-DNLILGSYDKKMCWFDLDLSSKPYKTLRLH---EKAVRSVAFHKRYPLFASGSDDGTVIVFHGM-------------V  681 (733)
T ss_pred             C-CeEEEecCCCeeEEEEcccCcchhHHhhhh---hhhhhhhhhccccceeeeecCCCcEEEEeee-------------e
Confidence            9 789999999999999994  4566666554   7789999999999999999999999964221             2


Q ss_pred             eeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccC
Q psy8448         370 LQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (482)
                      ++-                                   +..++++                               .++.
T Consensus       682 Y~D-----------------------------------l~qnpli-------------------------------VPlK  695 (733)
T KOG0650|consen  682 YND-----------------------------------LLQNPLI-------------------------------VPLK  695 (733)
T ss_pred             ehh-----------------------------------hhcCCce-------------------------------Eeee
Confidence            211                                   1011110                               1222


Q ss_pred             cceecccc----eeeccccCCcceEEEEecCceeecC
Q psy8448         450 EPEVHEKL----VIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       450 ~~~~h~~~----v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      .+.+|...    |..+.|+|...+|.|++.||+||+|
T Consensus       696 ~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  696 RLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            67788766    8899999999999999999999998

>KOG2106|consensus

Probab=99.96  E-value=4.2e-26  Score=199.54  Aligned_cols=355  Identities=17%  Similarity=0.179  Sum_probs=248.3

Q ss_pred             eeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccc
Q psy8448          69 TIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML  148 (482)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  148 (482)
                      .+...++....|..+........- .+....+..|.|++|.++|+ +++|..+|.|.||+..+.+..+...        .
T Consensus       216 iit~Gk~H~~Fw~~~~~~l~k~~~-~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~--------a  285 (626)
T KOG2106|consen  216 IITCGKGHLYFWTLRGGSLVKRQG-IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH--------A  285 (626)
T ss_pred             EEEeCCceEEEEEccCCceEEEee-ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee--------e
Confidence            455668888888776655433221 12223347899999999996 6889999999999987666544433        3


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE------------eEE----------------------------e
Q psy8448         149 MEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC------------LRK----------------------------L  188 (482)
Q Consensus       149 h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~----------------------------~  188 (482)
                      |++.|.+++...+|. |++|+.|..|..||-. -+.            ++.                            .
T Consensus       286 H~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~  363 (626)
T KOG2106|consen  286 HDGGVFSLCMLRDGT-LLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT  363 (626)
T ss_pred             cCCceEEEEEecCcc-EeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence            789999999999997 5559999999999821 100            000                            0


Q ss_pred             ecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy8448         189 EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE  268 (482)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~  268 (482)
                      ..+|......++.+|+...+++++.|+.+++|+  ..++..+.. ...+..|+.|+|.| .++.|+..|...+.|.++..
T Consensus       364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence            136777888999999999999999999999999  455554443 46778999999999 89999999999999999965


Q ss_pred             eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         269 CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       269 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      .+..-    ..+.+++.+.|+|+| .+|++|+.|+.|++|.+  +|.........+  ..+|+.+.|++|+++|.+-+.|
T Consensus       440 lv~~~----~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~--gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  440 LVTIH----TDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCS--GSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             eEEEE----ecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeec--CceeEEeeecCCCceEEeccCc
Confidence            55444    338899999999999 89999999999999998  466666665554  4899999999999999999999


Q ss_pred             cEEEEEeehhhhhhhcccccceeeeecccce-eecccccccce-e---------ccCCCcccchhccccccCCCchhhhh
Q psy8448         347 MVLVVRLIQQYLKESNLMKTLQCLQEETGVS-LNTVDSVDGFI-A---------DINNGHWDTVLKSVQSLKLPEKKLID  415 (482)
Q Consensus       347 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~l~~~~~~~  415 (482)
                      -.|..| .....+.......+ -|-..+-.. ....-+.++.. .         .++.|-..+.++..            
T Consensus       513 ~eiLyW-~~~~~~~~ts~kDv-kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf------------  578 (626)
T KOG2106|consen  513 YEILYW-KPSECKQITSVKDV-KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLF------------  578 (626)
T ss_pred             eEEEEE-ccccCcccceecce-eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEE------------
Confidence            999988 33222222211111 111111100 00000111110 0         11122222222111            


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         416 LYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                            .+....-..+.+.+.+|++-|++++|.-+.+.|++.+.|.+|..|
T Consensus       579 ----------------------~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW  623 (626)
T KOG2106|consen  579 ----------------------SYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQW  623 (626)
T ss_pred             ----------------------ccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEE
Confidence                                  222222334455788999999999999998988888899999988

>KOG4283|consensus

Probab=99.96  E-value=5.4e-27  Score=191.64  Aligned_cols=215  Identities=20%  Similarity=0.323  Sum_probs=175.4

Q ss_pred             ecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCcee-------eccccccccccccccccEEEEEEcC-CCCEEE
Q psy8448          96 KFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIR-------KDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLA  166 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~  166 (482)
                      ...|.+.|+++...+ .|+++++|+.||.|.+||+++....       +....-..+...+|.-.|..+.|-| |.-.+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            347899999999999 7899999999999999999865411       1111112234456888999999999 666888


Q ss_pred             EEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc---CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEE
Q psy8448         167 SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR---DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF  243 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~  243 (482)
                      +++.|.++++||..+-+....|.  .++.|.+-+++|   ...++++|..+-.|++.|+.+|..-..+.+|.+.|.++.|
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             cccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence            89999999999999988887774  667788889988   3457888999999999999999999999999999999999


Q ss_pred             cCCCCE-EEEEeCCCcEEEEECCCC-ceeeeee-----------ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         244 TADGHS-VLSASSDGTVKMWNLKTT-ECTSTFK-----------SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       244 ~~~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~~-----------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                      +|...+ |++|+.||.|++||++.. .+...+.           ....|.+.++.++|..++ .++++++.|..+++|+.
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNM  275 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeec
Confidence            998776 568899999999999864 2322221           223677889999999999 89999999999999999


Q ss_pred             -CCc
Q psy8448         311 -QGQ  313 (482)
Q Consensus       311 -~~~  313 (482)
                       .|.
T Consensus       276 ~~G~  279 (397)
T KOG4283|consen  276 ESGR  279 (397)
T ss_pred             ccCc
Confidence             443

>KOG2055|consensus

Probab=99.96  E-value=3.5e-27  Score=204.13  Aligned_cols=236  Identities=13%  Similarity=0.263  Sum_probs=190.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc--eeeccccccccccccccccEEEEEEcCCCC-EEEEEeCCCcEEE
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGK--IRKDLKYQAQDNFMLMEEAVMSLAYSRDSE-MLASGSQSGKVKI  176 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~~~~~dg~i~i  176 (482)
                      .+.|+++.|+|....|++++.||+++||.+....  .++.+...        ..+|.+.+|.|+|. .+++++....++.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--------~fPi~~a~f~p~G~~~i~~s~rrky~ys  284 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--------KFPIQKAEFAPNGHSVIFTSGRRKYLYS  284 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--------cCccceeeecCCCceEEEecccceEEEE
Confidence            4689999999999999999999999999986433  22333322        56899999999998 8999999999999


Q ss_pred             EEcCCCeEeEEee-ccc-CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         177 WKIATGQCLRKLE-KAH-SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       177 wd~~~~~~~~~~~-~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      ||+.+.+....-. .++ ...+.....+|++++|+..+..|.|.+....+++.+.+++ ..+.|..++|+.+++.|++.+
T Consensus       285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~  363 (514)
T KOG2055|consen  285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASG  363 (514)
T ss_pred             eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEc
Confidence            9998876543211 122 3457788899999999999999999999999999998888 577899999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-------CcEEEEecCCcccCcC
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-------GQIVRSLSSGKREGGD  327 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~  327 (482)
                      .+|.|.+||++...++..+....+  -.=++++.++++ .+|++|+..|.|.|||.+       -+++..+...   ...
T Consensus       364 ~~GeV~v~nl~~~~~~~rf~D~G~--v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL---tt~  437 (514)
T KOG2055|consen  364 GTGEVYVWNLRQNSCLHRFVDDGS--VHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL---TTA  437 (514)
T ss_pred             CCceEEEEecCCcceEEEEeecCc--cceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhh---hee
Confidence            999999999999999998864221  223567777888 799999999999999963       1233333332   577


Q ss_pred             EEEEEEcCCCCEEEEEeC--CcEEE
Q psy8448         328 FLCCTTSPRGEWIYCVGE--DMVLV  350 (482)
Q Consensus       328 v~~~~~~~~g~~l~~~~~--dg~i~  350 (482)
                      |++++|++|++.|+.+|.  +..++
T Consensus       438 Itsl~Fn~d~qiLAiaS~~~knalr  462 (514)
T KOG2055|consen  438 ITSLQFNHDAQILAIASRVKKNALR  462 (514)
T ss_pred             eeeeeeCcchhhhhhhhhccccceE
Confidence            999999999999997775  45555

>KOG0299|consensus

Probab=99.96  E-value=2.3e-27  Score=205.27  Aligned_cols=200  Identities=23%  Similarity=0.322  Sum_probs=171.6

Q ss_pred             ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeE-Eee----------------cccCCCeEEEEEccCCCEEE
Q psy8448         147 MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR-KLE----------------KAHSLGVTCIQFSRDNSQIL  209 (482)
Q Consensus       147 ~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~----------------~~~~~~v~~i~~~~~~~~l~  209 (482)
                      ..|.-++++++++|++++.++++.+|+|.-|++.+++... .+.                ..|...+.+++.++||++|+
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla  218 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA  218 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence            3467899999999999999999999999999998876431 110                25777899999999999999


Q ss_pred             EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEc
Q psy8448         210 TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLL  289 (482)
Q Consensus       210 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  289 (482)
                      +|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|+.|++|++.....+.++.   +|...|.+|...
T Consensus       219 tgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly---GHqd~v~~IdaL  295 (479)
T KOG0299|consen  219 TGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY---GHQDGVLGIDAL  295 (479)
T ss_pred             ecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh---CCccceeeechh
Confidence            99999999999999999999999999999999999888899999999999999999888777777   999999999988


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         290 PKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       290 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ..+ ..+.+|+.|+++++|++.......+..+   .+.+-|++|-.+ ..+++|+.||.|.+|++
T Consensus       296 ~re-R~vtVGgrDrT~rlwKi~eesqlifrg~---~~sidcv~~In~-~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  296 SRE-RCVTVGGRDRTVRLWKIPEESQLIFRGG---EGSIDCVAFIND-EHFVSGSDNGSIALWSL  355 (479)
T ss_pred             ccc-ceEEeccccceeEEEeccccceeeeeCC---CCCeeeEEEecc-cceeeccCCceEEEeee
Confidence            876 6777788999999999954444444444   667889999754 57889999999996554

>KOG1273|consensus

Probab=99.96  E-value=1.6e-26  Score=190.63  Aligned_cols=249  Identities=20%  Similarity=0.341  Sum_probs=185.6

Q ss_pred             ccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE
Q psy8448          86 KYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML  165 (482)
Q Consensus        86 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  165 (482)
                      .+|..+..++..+|   -.|+.|++.|.+||+|+.||.|.|||+.+...-        ..+.+|..+|++++|+++|+.|
T Consensus        12 ~~PEel~~tld~~~---a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--------r~lsaH~~pi~sl~WS~dgr~L   80 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL---AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--------RMLSAHVRPITSLCWSRDGRKL   80 (405)
T ss_pred             cChHhhceeccCCc---cceEEeccCcceeeeeccCCcEEEEEccccchh--------hhhhccccceeEEEecCCCCEe
Confidence            57888887776555   789999999999999999999999999886533        3445578899999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEeecc----ccceeE
Q psy8448         166 ASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEFRGH----SSFVND  240 (482)
Q Consensus       166 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~i~~  240 (482)
                      ++++.|..|.+||+..|.++..+.  ..++|..+.|+|.. +..++.-.+..-.+.++..++...--...    .....+
T Consensus        81 ltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~  158 (405)
T KOG1273|consen   81 LTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASH  158 (405)
T ss_pred             eeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccc
Confidence            999999999999999999998885  77899999999944 33334434444455555443221111111    111234


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-----CcEE
Q psy8448         241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-----GQIV  315 (482)
Q Consensus       241 l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~  315 (482)
                      ..|.+.|+++++|...|.+.++|..+.+++..++..  ....|.++.++..| +.|+.-+.|+.|+.|++.     |+-.
T Consensus       159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit--s~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~  235 (405)
T KOG1273|consen  159 GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT--SVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDG  235 (405)
T ss_pred             ccccCCCCEEEEecCcceEEEEecchheeeeeeeec--hheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccC
Confidence            468899999999999999999999999999888732  23688999999988 899999999999999984     1111


Q ss_pred             EEecCCc----ccCcCEEEEEEcCCCCEEEEEeC-CcEEE
Q psy8448         316 RSLSSGK----REGGDFLCCTTSPRGEWIYCVGE-DMVLV  350 (482)
Q Consensus       316 ~~~~~~~----~~~~~v~~~~~~~~g~~l~~~~~-dg~i~  350 (482)
                      ..-..++    .....-.+++|+.+|.++++++. ...++
T Consensus       236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY  275 (405)
T KOG1273|consen  236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY  275 (405)
T ss_pred             CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence            1110000    01334468999999999998774 34566

>KOG0264|consensus

Probab=99.96  E-value=3.2e-27  Score=204.32  Aligned_cols=255  Identities=18%  Similarity=0.284  Sum_probs=197.3

Q ss_pred             ccccccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEe----------EEeecccCCCeEEEEEccC-CCEEEEEECC
Q psy8448         147 MLMEEAVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCL----------RKLEKAHSLGVTCIQFSRD-NSQILTASFD  214 (482)
Q Consensus       147 ~~h~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d  214 (482)
                      ..|.+.|+.+.+.|+.. .+++.+..+.+.|||..+....          .++ .+|...-..++|++. ...+++++.|
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL-KGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE-EeecccccccccccccceeEeeccCC
Confidence            34789999999999654 5666778899999997543211          144 578777788999984 4579999999


Q ss_pred             CeEEEEeCCCCc-------eEEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCC--CceeeeeeccCCCcccee
Q psy8448         215 TYVRIHGLKSGK-------MLKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKT--TECTSTFKSLGASDIAVN  284 (482)
Q Consensus       215 g~i~i~d~~~~~-------~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~v~  284 (482)
                      +.|.+||+....       +...+.+|...|..++|++ +...|++++.|+.+.|||+|+  .++.....   +|..+|+
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~---ah~~~vn  276 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK---AHSAEVN  276 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc---ccCCcee
Confidence            999999997543       3466789999999999999 556788999999999999995  33333333   8999999


Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEeehhhhhhh
Q psy8448         285 SIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRLIQQYLKES  361 (482)
Q Consensus       285 ~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~~~~~~~~  361 (482)
                      +++|+|.+..+|++|+.|++|.+||++  .+++..+..+   ...|.++.|+|.. ..|++++.|+.+.+||+.+.....
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H---~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH---EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC---CcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            999999998999999999999999995  4566667665   8899999999984 577889999999988876321111


Q ss_pred             cccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccC
Q psy8448         362 NLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTD  441 (482)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (482)
                      .                 .-++.++..                  .+                             .+  
T Consensus       354 ~-----------------~eda~dgpp------------------El-----------------------------lF--  367 (422)
T KOG0264|consen  354 S-----------------PEDAEDGPP------------------EL-----------------------------LF--  367 (422)
T ss_pred             C-----------------hhhhccCCc------------------ce-----------------------------eE--
Confidence            0                 000000000                  11                             34  


Q ss_pred             cccccccCcceecccceeeccccCCcc-eEEEEecCceeecC
Q psy8448         442 PMIFMKQHEPEVHEKLVIGLTHHPHQN-LLGTYSEDGLLRFS  482 (482)
Q Consensus       442 ~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~i~iW  482 (482)
                              .-.||...|+.+.|+|... .++|.++|+.+.||
T Consensus       368 --------~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  368 --------IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW  401 (422)
T ss_pred             --------EecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence                    6779999999999999987 56688999999999

>KOG0300|consensus

Probab=99.96  E-value=4.1e-27  Score=194.38  Aligned_cols=269  Identities=19%  Similarity=0.315  Sum_probs=217.3

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEec------CCCceee-----------
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNF------TTGKIRK-----------  136 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~------~~~~~~~-----------  136 (482)
                      +-...+|..+....-.++     .||.+.|+|++|++.+.++++++.|++-+||..      .......           
T Consensus       169 DhTA~iWs~Esg~CL~~Y-----~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s  243 (481)
T KOG0300|consen  169 DHTARIWSLESGACLATY-----TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS  243 (481)
T ss_pred             ccceeEEeeccccceeee-----cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence            334455665544443333     399999999999999999999999999999972      1100000           


Q ss_pred             ----------------ccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEE
Q psy8448         137 ----------------DLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ  200 (482)
Q Consensus       137 ----------------~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~  200 (482)
                                      ++ -.+...+.+|...|.+..|-..|+.+++++.|.+..+||+++++.+..+ .+|....+.++
T Consensus       244 De~~~d~d~~~~sD~~ti-RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~L-tGHd~ELtHcs  321 (481)
T KOG0300|consen  244 DEHNRDTDSSEKSDGHTI-RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNIL-TGHDSELTHCS  321 (481)
T ss_pred             cccccccccccccCCcee-eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccc-cCcchhccccc
Confidence                            00 0122356789999999999999999999999999999999999999998 79999999999


Q ss_pred             EccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeeeeccCC
Q psy8448         201 FSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE-CTSTFKSLGA  278 (482)
Q Consensus       201 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~  278 (482)
                      -+|..+++++++.|.+.++||.+.. ..+..|.+|...|++..|..+.+ +++|+.|.+|++||+++.+ ++.++    .
T Consensus       322 tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATI----R  396 (481)
T KOG0300|consen  322 THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATI----R  396 (481)
T ss_pred             cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceee----e
Confidence            9999999999999999999999843 45678999999999999997654 9999999999999999865 44555    3


Q ss_pred             CccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEec--CCcccCcCEEEEEEcCCC--CEEEEEeCCcEEEEEee
Q psy8448         279 SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS--SGKREGGDFLCCTTSPRG--EWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       279 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~g--~~l~~~~~dg~i~iw~~  354 (482)
                      ...+++.++.+..+ .+++.--.+..|++||++|..+..+.  ....|..-|.|++|..+.  .-|++++.|..+.-|.+
T Consensus       397 tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  397 TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             cCCccceeEeecCC-ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence            46788999998866 78888888899999999999888877  334467789999998653  46889999999996654


Q ss_pred             h
Q psy8448         355 Q  355 (482)
Q Consensus       355 ~  355 (482)
                      .
T Consensus       476 n  476 (481)
T KOG0300|consen  476 N  476 (481)
T ss_pred             c
Confidence            3

>KOG0647|consensus

Probab=99.96  E-value=1.1e-26  Score=190.60  Aligned_cols=198  Identities=20%  Similarity=0.322  Sum_probs=160.9

Q ss_pred             cccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce
Q psy8448         150 EEAVMSLAYSR-DSEMLASGSQSGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM  227 (482)
Q Consensus       150 ~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~  227 (482)
                      ++.|.+|+||| ....+++++.||+|++|+++. +....+....|.++|.+++|+.+|..+++|+.|+.+++||+.+++ 
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-  105 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-  105 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-
Confidence            57899999999 556677899999999999987 455555556799999999999999999999999999999999996 


Q ss_pred             EEEeeccccceeEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         228 LKEFRGHSSFVNDITFTADGH--SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       228 ~~~~~~~~~~i~~l~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                      +..+..|.++|.++.|-+...  .|++|+-|.+|+.||++...++.++.    -...+.++..-.   .+++++..++.|
T Consensus       106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~----LPeRvYa~Dv~~---pm~vVata~r~i  178 (347)
T KOG0647|consen  106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ----LPERVYAADVLY---PMAVVATAERHI  178 (347)
T ss_pred             eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee----ccceeeehhccC---ceeEEEecCCcE
Confidence            455667999999999988655  89999999999999999998888874    345666665543   689999999999


Q ss_pred             EEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         306 VIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       306 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      .+|++++.+...-.........++|++..+|.+..+.|+-+|.+.|..++
T Consensus       179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence            99999543322221111225678999999998888999999999965443

>KOG0646|consensus

Probab=99.95  E-value=6.8e-27  Score=202.75  Aligned_cols=276  Identities=16%  Similarity=0.205  Sum_probs=207.0

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEE
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ  200 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~  200 (482)
                      ..+.+||+.+|....+++....  ..+|    ..-+.  .+.+++++. ....+.+|.+......... .--.+++.+++
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~--a~~~----sl~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~   88 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYL--AQAA----SLTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALA   88 (476)
T ss_pred             cceeEEecCCCceeEEecCccc--ccch----hhhhh--chhheeeecccCccccccccCchhhhhhh-cccccceeeee
Confidence            4599999999988776665421  0001    11111  235666665 4458899998765554422 23567899999


Q ss_pred             EccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC------Cceeeeee
Q psy8448         201 FSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT------TECTSTFK  274 (482)
Q Consensus       201 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~  274 (482)
                      -+|+|.+++.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|++..      ......+.
T Consensus        89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~  168 (476)
T KOG0646|consen   89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH  168 (476)
T ss_pred             cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence            999999999998999999999999999999999999999999999999999999999999998742      11222333


Q ss_pred             ccCCCccceeEEEEcCCC-CCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         275 SLGASDIAVNSIHLLPKN-TEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       275 ~~~~~~~~v~~i~~~~~~-~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      .+..|.-+|+++...+.+ ...+++++.|.++++||+ .|..+.++..    ...+.+++.+|-++.+++|+.+|.|.+.
T Consensus       169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----p~si~av~lDpae~~~yiGt~~G~I~~~  244 (476)
T KOG0646|consen  169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----PSSIKAVALDPAERVVYIGTEEGKIFQN  244 (476)
T ss_pred             eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----CCcceeEEEcccccEEEecCCcceEEee
Confidence            334899999999988763 368999999999999999 6777777765    5789999999999999999999999965


Q ss_pred             eehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhh
Q psy8448         353 LIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGA  432 (482)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  432 (482)
                      .+........... .+.+                                                              
T Consensus       245 ~~~~~~~~~~~v~-~k~~--------------------------------------------------------------  261 (476)
T KOG0646|consen  245 LLFKLSGQSAGVN-QKGR--------------------------------------------------------------  261 (476)
T ss_pred             ehhcCCccccccc-cccc--------------------------------------------------------------
Confidence            5432111000000 0000                                                              


Q ss_pred             hhhhccccCcccccccCcceeccc--ceeeccccCCcceEEEEecCceeecC
Q psy8448         433 ARSLLRQTDPMIFMKQHEPEVHEK--LVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                               ......+..+.||.+  +|++++.+-||.+|++|+.||.|+||
T Consensus       262 ---------~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  262 ---------HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW  304 (476)
T ss_pred             ---------ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence                     001111227779988  89999999999999999999999999

>KOG2445|consensus

Probab=99.95  E-value=1.1e-25  Score=185.25  Aligned_cols=256  Identities=16%  Similarity=0.205  Sum_probs=196.8

Q ss_pred             eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeC
Q psy8448          93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQ  170 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~  170 (482)
                      +.+..+|++-|.|+.|.+.|+.+|+|+.|++|+|||.++...    ..........|.+.|..+.|.+  -|+.+|+++.
T Consensus         6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~----~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~   81 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG----TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY   81 (361)
T ss_pred             cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC----ceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence            345569999999999999999999999999999999765443    2333445666899999999977  6899999999


Q ss_pred             CCcEEEEEcCCC---------eEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEeCCCCc------eEEEee-
Q psy8448         171 SGKVKIWKIATG---------QCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLKSGK------MLKEFR-  232 (482)
Q Consensus       171 dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~-  232 (482)
                      |+++.||.-...         ....++ ......|+.+.|.|  -|-.+++++.||.++||+.-..-      ...++. 
T Consensus        82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   82 DRTVSIWEEQEKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             CCceeeeeecccccccccceeEEEEEe-ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence            999999974211         112233 55678899999999  57789999999999999875432      222232 


Q ss_pred             ------ccccceeEEEEcCC---CCEEEEEeCC-----CcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCC---C
Q psy8448         233 ------GHSSFVNDITFTAD---GHSVLSASSD-----GTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNT---E  294 (482)
Q Consensus       233 ------~~~~~i~~l~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~---~  294 (482)
                            .+..+..|+.|+|.   ..+|++|+.+     +.+.||...... .-.....+..+..+|+.++|.|.-+   .
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~  240 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH  240 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence                  35667889999983   4678888766     478899876543 3344444558999999999999743   5


Q ss_pred             EEEEEeCCCeEEEEEcCCc------------------EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         295 HFVVCNKTNTVVIMNMQGQ------------------IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       295 ~l~~~~~d~~i~i~d~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ++++++.|| |+||.+...                  .+..+.....|.+.|..+.|+-.|..|++.|.||.+++|.-
T Consensus       241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            789999999 999998521                  23344445556899999999999999999999999998854

>KOG0268|consensus

Probab=99.95  E-value=2.3e-27  Score=199.17  Aligned_cols=259  Identities=12%  Similarity=0.189  Sum_probs=206.2

Q ss_pred             ccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          72 LFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      .++|.+.+|+..+.....     ....|.+.|..|++..  ..+++++.|++|+.|.++.. ...++..         ..
T Consensus        86 s~DG~VkiWnlsqR~~~~-----~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~tilg---------~s  148 (433)
T KOG0268|consen   86 SCDGEVKIWNLSQRECIR-----TFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTILG---------KS  148 (433)
T ss_pred             ccCceEEEEehhhhhhhh-----eeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeeec---------cc
Confidence            458999999987654333     3348999999999987  67888999999999997652 3333322         35


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEE
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~  230 (482)
                      .+..+.-+..++.+++||.  .|.|||.....++..+ .-....|.++.|+|.. ..|+++..|+.|.+||++++.+++.
T Consensus       149 ~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sm-swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K  225 (433)
T KOG0268|consen  149 VYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSM-SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK  225 (433)
T ss_pred             cccccccccccccccccCc--eeeecccccCCcccee-ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccce
Confidence            6778888888888999987  5999999888888888 4556679999999954 5677777999999999999998877


Q ss_pred             eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                      +. ..-..+.|+|+|++-.+++++.|..++.||++..+  ..+....+|.+.|.++.|+|.| .-|++|+.|.+|+||..
T Consensus       226 Vi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  226 VI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             ee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCc-chhccccccceEEEeec
Confidence            65 34456889999988889999999999999999754  2233333899999999999999 88999999999999999


Q ss_pred             CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         311 QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       311 ~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +...-+.+...+ ....|.|+.|+.|.+++++||+|+.|++|.-.
T Consensus       302 ~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  302 NHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             CCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            533322222111 15678999999999999999999999977543

>KOG2048|consensus

Probab=99.95  E-value=2.1e-25  Score=202.05  Aligned_cols=238  Identities=18%  Similarity=0.305  Sum_probs=197.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ..+|.+++|+.+.+.||.+-.+|.|.||++..+=.....-..+      -+..|.+++|++. ..|++.+.+|.|.-||+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~------~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP------EDRSIESLAWAEG-GRLFSSGLSGSITEWDL   97 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecC------CCCceeeEEEccC-CeEEeecCCceEEEEec
Confidence            5689999999999999999999999999998754333222111      1578999999954 56889899999999999


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE--EeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      .+.+....+ ....+.|.+++.+|.+..+++|+.||.+..++...++...  .+...++.|.+++|+|++..+++|+.||
T Consensus        98 ~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen   98 HTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG  176 (691)
T ss_pred             ccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence            999999888 5788899999999999999999999988888887776543  3445678999999999999999999999


Q ss_pred             cEEEEECCCCceeeeee----cc-CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEE
Q psy8448         258 TVKMWNLKTTECTSTFK----SL-GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCC  331 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~----~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~  331 (482)
                      .|++||..++.......    .. .....-|+++.+..+  ..+++|...|+|.+||. .+..+..+..+   ...|.++
T Consensus       177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~~~h---~adVl~L  251 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSHSCH---DADVLAL  251 (691)
T ss_pred             eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhhhhh---hcceeEE
Confidence            99999999987766211    11 124456888888876  48999999999999999 56666555544   8899999


Q ss_pred             EEcCCCCEEEEEeCCcEEE
Q psy8448         332 TTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       332 ~~~~~g~~l~~~~~dg~i~  350 (482)
                      +..++++++++++.|+.+.
T Consensus       252 av~~~~d~vfsaGvd~~ii  270 (691)
T KOG2048|consen  252 AVADNEDRVFSAGVDPKII  270 (691)
T ss_pred             EEcCCCCeEEEccCCCceE
Confidence            9999999999999999999

>KOG0639|consensus

Probab=99.95  E-value=5.8e-27  Score=204.79  Aligned_cols=265  Identities=19%  Similarity=0.325  Sum_probs=218.1

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++-+.+|+...........+---....+.|.++...|||+.|++|+.-.++.|||+..............      .-.
T Consensus       438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltss------apa  511 (705)
T KOG0639|consen  438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS------APA  511 (705)
T ss_pred             CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCc------chh
Confidence            36778899976543222222111113567899999999999999999999999999986554332222211      235


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  232 (482)
                      +.+++.+||.+..++|+.||.|.|||+.+...++.+ .+|...+.||.++++|..|.+|+.|++|+.||+++++.+....
T Consensus       512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd  590 (705)
T KOG0639|consen  512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD  590 (705)
T ss_pred             hhhhhcCCccceeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh
Confidence            788999999999999999999999999999999999 7999999999999999999999999999999999998776554


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C
Q psy8448         233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q  311 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~  311 (482)
                       ....|.++.++|++.++++|-.++.+.+......+. ..+.   .|+..|.++.|.+.| +++++.+.|+.+..|.. -
T Consensus       591 -F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlh---lheScVLSlKFa~cG-kwfvStGkDnlLnawrtPy  664 (705)
T KOG0639|consen  591 -FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLH---LHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPY  664 (705)
T ss_pred             -hhhhheecccCCCccceeeecccCcEEEEecCCccc-eeec---ccccEEEEEEecccC-ceeeecCchhhhhhccCcc
Confidence             567899999999999999999999998888765543 3333   789999999999999 89999999999999999 5


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      |..+.....    ...|.++.++.|.++|++|+.|....+|.+
T Consensus       665 GasiFqskE----~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  665 GASIFQSKE----SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccceeeccc----cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            776666654    678999999999999999999998886654

>KOG0308|consensus

Probab=99.95  E-value=1.1e-26  Score=209.30  Aligned_cols=267  Identities=19%  Similarity=0.321  Sum_probs=217.2

Q ss_pred             CCcccccccccccc-ccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKY-PTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        74 ~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      +|.+..|....... |..........|.+.|+.+....+++.|++++.|-+|++|+...+..      -....+..|.+.
T Consensus        46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------~c~stir~H~DY  119 (735)
T KOG0308|consen   46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------FCMSTIRTHKDY  119 (735)
T ss_pred             CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc------hhHhhhhcccch
Confidence            66677777654433 22221222348999999999999999999999999999999887641      112234457899


Q ss_pred             EEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCeE--eE--------EeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe
Q psy8448         153 VMSLAY-SRDSEMLASGSQSGKVKIWKIATGQC--LR--------KLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG  221 (482)
Q Consensus       153 i~~l~~-~~~~~~l~~~~~dg~i~iwd~~~~~~--~~--------~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d  221 (482)
                      |.|+++ .++...+|+||-|+.|.+||+.++..  +.        .+..++..+|.+++-++.|..|++|+..+.+++||
T Consensus       120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD  199 (735)
T KOG0308|consen  120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD  199 (735)
T ss_pred             heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence            999999 77888999999999999999987722  22        22236778899999999999999999999999999


Q ss_pred             CCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      .++.+.+..+++|...|.++..++||+.+++++.||+|++||+...+|+.++.   .|...|.++..+|+- ..+++|+.
T Consensus       200 prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---vH~e~VWaL~~~~sf-~~vYsG~r  275 (735)
T KOG0308|consen  200 PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---VHKEGVWALQSSPSF-THVYSGGR  275 (735)
T ss_pred             cccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---eccCceEEEeeCCCc-ceEEecCC
Confidence            99999999999999999999999999999999999999999999999999988   888889999999877 89999999


Q ss_pred             CCeEEEEEcCC--cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         302 TNTVVIMNMQG--QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       302 d~~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ||.|..-|+..  +....+..    ..++..+..+...+-+-+++.|+.|.-|..
T Consensus       276 d~~i~~Tdl~n~~~~tlick~----daPv~~l~~~~~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  276 DGNIYRTDLRNPAKSTLICKE----DAPVLKLHLHEHDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             CCcEEecccCCchhheEeecC----CCchhhhhhccccCCceeeeccccceecCC
Confidence            99999999954  22222222    556777888766666678899999995433

>KOG2445|consensus

Probab=99.95  E-value=5.5e-25  Score=181.07  Aligned_cols=265  Identities=17%  Similarity=0.190  Sum_probs=192.3

Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe----EeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEe
Q psy8448         148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ----CLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHG  221 (482)
Q Consensus       148 ~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d  221 (482)
                      +|.+-|.++.|.+.|+.+|+|+.|++++|||.+...    +.... +.|.+.|..+.|.+  -|+.+++++.|+++.||.
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            467889999999999999999999999999975442    34445 67999999999966  589999999999999998


Q ss_pred             CC---------CCceEEEeeccccceeEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeee------e----ccCCCc
Q psy8448         222 LK---------SGKMLKEFRGHSSFVNDITFTA--DGHSVLSASSDGTVKMWNLKTTECTSTF------K----SLGASD  280 (482)
Q Consensus       222 ~~---------~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~----~~~~~~  280 (482)
                      -.         ......++....+.|+.++|.|  -|-.|++++.||.++||+.-..-....+      .    ++..+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            52         1223456677888999999999  4678899999999999987653322221      1    222456


Q ss_pred             cceeEEEEcCCC--CCEEEEEeCC-----CeEEEEEc--CCcEEEEecCCcccCcCEEEEEEcCC----CCEEEEEeCCc
Q psy8448         281 IAVNSIHLLPKN--TEHFVVCNKT-----NTVVIMNM--QGQIVRSLSSGKREGGDFLCCTTSPR----GEWIYCVGEDM  347 (482)
Q Consensus       281 ~~v~~i~~~~~~--~~~l~~~~~d-----~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~----g~~l~~~~~dg  347 (482)
                      .+..|+.|+|..  ..+|++|+.+     +.++||..  .++..........+..+|+.++|.|+    -..||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            677899999753  3578888766     57888887  35455555544456899999999997    35789999999


Q ss_pred             EEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHH
Q psy8448         348 VLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIEL  427 (482)
Q Consensus       348 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  427 (482)
                       |+||.+......-...+               +.+++...                  ++                   
T Consensus       250 -v~I~~v~~~~s~i~~ee---------------~~~~~~~~------------------~l-------------------  276 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEE---------------VLAPDLMT------------------DL-------------------  276 (361)
T ss_pred             -EEEEEEeeccchhhhhc---------------ccCCCCcc------------------cc-------------------
Confidence             99776552111100000               00000000                  00                   


Q ss_pred             HhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         428 RELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                .      -..+..+.+|.+.|..+.|+-.|..|+|.|+||+||+|
T Consensus       277 ----------~------v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  277 ----------P------VEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             ----------c------eEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence                      0      01112677899999999999999999999999999999

>KOG0269|consensus

Probab=99.95  E-value=5.8e-27  Score=215.03  Aligned_cols=242  Identities=15%  Similarity=0.297  Sum_probs=195.9

Q ss_pred             cEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q psy8448         102 HVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       102 ~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~  179 (482)
                      .+..++|+. +.++||+++..|.|.+||+...-     .......+..|+..++++.|++ ..++|++|+.||.|++||+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl  163 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL  163 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccc-----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence            355678876 67899999999999999998621     1222234455789999999999 5678999999999999999


Q ss_pred             CCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCc-eEEEeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGK-MLKEFRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      +..+....+ .+....|+.++|+| .+..++++...|.+++||+|... +...+.+|.++|.|+.|+|++.+|++|+.|+
T Consensus       164 R~~~S~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK  242 (839)
T KOG0269|consen  164 RSKKSKSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK  242 (839)
T ss_pred             ecccccccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc
Confidence            998888888 56788899999999 56789999999999999999764 5677889999999999999999999999999


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC--CCeEEEEEcCC--cEEEEecCCcccCcCEEEEEE
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK--TNTVVIMNMQG--QIVRSLSSGKREGGDFLCCTT  333 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--d~~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~  333 (482)
                      .|+|||+.+.+.......  ....++..+.|-|..+.+|++++.  |-.|++||++.  -+..++..|   ...++.++|
T Consensus       243 ~vkiWd~t~~~~~~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH---~~~vt~i~W  317 (839)
T KOG0269|consen  243 MVKIWDMTDSRAKPKHTI--NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH---TDSVTGIAW  317 (839)
T ss_pred             cEEEEeccCCCccceeEE--eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc---Cccccceec
Confidence            999999987554333221  446789999999999888888774  67899999953  344455544   677888999


Q ss_pred             cC-CCCEEEEEeCCcEEEEEee
Q psy8448         334 SP-RGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       334 ~~-~g~~l~~~~~dg~i~iw~~  354 (482)
                      .. |...+.+++.||.+....+
T Consensus       318 ~~~d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  318 DSGDRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             cCCCceeeEeecCccHHHHhhh
Confidence            65 4567889999999875443

>KOG2106|consensus

Probab=99.95  E-value=1.8e-24  Score=189.49  Aligned_cols=236  Identities=18%  Similarity=0.324  Sum_probs=187.5

Q ss_pred             CCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          99 SKSHVECARFSPDG-QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        99 h~~~v~~~~~s~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      .+..|....|+|.+ +++++++ .|.+..|+.+.+.+.++...-....    ...|.|++|.++|+ +++|..+|.|.||
T Consensus       199 sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~e----kk~Vl~v~F~engd-viTgDS~G~i~Iw  272 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKRE----KKFVLCVTFLENGD-VITGDSGGNILIW  272 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeecccccc----ceEEEEEEEcCCCC-EEeecCCceEEEE
Confidence            35678899999954 5556655 6889999999887665433222111    36799999999997 8899999999999


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE-----------------------------
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML-----------------------------  228 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------  228 (482)
                      +..+.+..+... .|.+.|.+++...+|. |++|+.|..|..||-. -+.+                             
T Consensus       273 ~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN  349 (626)
T KOG2106|consen  273 SKGTNRISKQVH-AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRN  349 (626)
T ss_pred             eCCCceEEeEee-ecCCceEEEEEecCcc-EeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence            998888877774 8999999999999886 5559999999999832 1100                             


Q ss_pred             ------------EEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEE
Q psy8448         229 ------------KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHF  296 (482)
Q Consensus       229 ------------~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  296 (482)
                                  ....+|......++.+|+.+.+++++.|+.+++|+  ..+...+.    ....+..++.|+|.|  .+
T Consensus       350 ~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~----~~~d~~~~~~fhpsg--~v  421 (626)
T KOG2106|consen  350 FILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK----IIEDPAECADFHPSG--VV  421 (626)
T ss_pred             eEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE----EecCceeEeeccCcc--eE
Confidence                        01135777888999999999999999999999999  33444433    335688999999997  89


Q ss_pred             EEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         297 VVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       297 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ++|+..|...+.|.+.+.+.++...   ..++++++|+|+|.+||.|+.|+.|+||.+
T Consensus       422 a~Gt~~G~w~V~d~e~~~lv~~~~d---~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V  476 (626)
T KOG2106|consen  422 AVGTATGRWFVLDTETQDLVTIHTD---NEQLSVVRYSPDGAFLAVGSHDNHIYIYRV  476 (626)
T ss_pred             EEeeccceEEEEecccceeEEEEec---CCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence            9999999999999977666666544   678999999999999999999999996543

>KOG1332|consensus

Probab=99.95  E-value=2.3e-26  Score=183.09  Aligned_cols=203  Identities=23%  Similarity=0.266  Sum_probs=163.3

Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---EeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEeC
Q psy8448         148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ---CLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGL  222 (482)
Q Consensus       148 ~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d~  222 (482)
                      .|++.|..+...-.|++|++|+.|++|+|+..+.+.   .+..+ .+|.++|..++|..  -|..|++++.||.|.||.-
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAEL-TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEe-cCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            467778887777789999999999999999998664   45566 79999999999965  7899999999999999998


Q ss_pred             CCCc--eEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC---C---
Q psy8448         223 KSGK--MLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK---N---  292 (482)
Q Consensus       223 ~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~---  292 (482)
                      .+++  .......|...|++++|.|.  |-.|++++.||.|.|.+.++...-..-+....|...|+++.|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            8774  34456689999999999995  567899999999999998865211111222388999999999996   2   


Q ss_pred             -------CCEEEEEeCCCeEEEEEcCC---cEEEEecCCcccCcCEEEEEEcCCC----CEEEEEeCCcEEEEEee
Q psy8448         293 -------TEHFVVCNKTNTVVIMNMQG---QIVRSLSSGKREGGDFLCCTTSPRG----EWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       293 -------~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~v~~~~~~~~g----~~l~~~~~dg~i~iw~~  354 (482)
                             .+.|++|+.|+.|+||+.+.   ..-.++..   |..-|+.++|.|.-    ..|++++.||++.||..
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~---H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG---HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhh---cchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence                   24699999999999999954   22333444   47889999999974    57999999999997743

>KOG0269|consensus

Probab=99.94  E-value=2e-26  Score=211.62  Aligned_cols=245  Identities=15%  Similarity=0.304  Sum_probs=187.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEE
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd  178 (482)
                      +...++|..+++-..++.++. ..+.||.++............... ..-...+..+.|+. +.++||+++..|.|.+||
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~k-qn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTK-QNKFYSAADVKWGQLYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccc-cceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence            455677888898888888875 468888776433221111110000 00013466777876 678999999999999999


Q ss_pred             cCC---CeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC-CCCEEEEE
Q psy8448         179 IAT---GQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-DGHSVLSA  253 (482)
Q Consensus       179 ~~~---~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~  253 (482)
                      +..   .+.+..+ ..|...+.++.|++ ...+|++|+.||.|++||++..+...++.+....|..++|+| .+..++++
T Consensus       117 lnk~~rnk~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~  195 (839)
T KOG0269|consen  117 LNKSIRNKLLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI  195 (839)
T ss_pred             cCccccchhhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence            976   4445556 78999999999998 456789999999999999999999999999999999999999 67889999


Q ss_pred             eCCCcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC---cEEEEecCCcccCcCEE
Q psy8448         254 SSDGTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG---QIVRSLSSGKREGGDFL  329 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~v~  329 (482)
                      .+.|.+++||++... +...+.   .|.++|.++.|+|++ .+|++|+.|+.|+|||+++   +...++..    ..++.
T Consensus       196 ~dsG~lqlWDlRqp~r~~~k~~---AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~tInT----iapv~  267 (839)
T KOG0269|consen  196 HDSGYLQLWDLRQPDRCEKKLT---AHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKHTINT----IAPVG  267 (839)
T ss_pred             cCCceEEEeeccCchhHHHHhh---cccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccceeEEee----cceee
Confidence            999999999999754 334444   999999999999976 9999999999999999953   33444443    57889


Q ss_pred             EEEEcCCCCE-EEEEe--CCcEEEEEeeh
Q psy8448         330 CCTTSPRGEW-IYCVG--EDMVLVVRLIQ  355 (482)
Q Consensus       330 ~~~~~~~g~~-l~~~~--~dg~i~iw~~~  355 (482)
                      ++.|-|...+ |++++  .|-.|+|||++
T Consensus       268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  268 RVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             eeeeccCccchhhhhhccccceEEEEeec
Confidence            9999998765 44443  57788966654

>KOG1539|consensus

Probab=99.94  E-value=3.5e-25  Score=205.04  Aligned_cols=303  Identities=18%  Similarity=0.316  Sum_probs=226.2

Q ss_pred             eeccCCccccccccccccccccceeeecCC-CCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeeccccccccccc
Q psy8448          70 IDLFRGKAAMKDQEEEKYPTQLSKQIKFGS-KSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM  147 (482)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  147 (482)
                      +...+|.+.+.+......-      +.+.| .++|+.++|..||..+ |+|+..|.+.+||++..+........      
T Consensus       219 iG~~~G~ViifNlK~dkil------~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na------  286 (910)
T KOG1539|consen  219 IGLENGTVIIFNLKFDKIL------MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA------  286 (910)
T ss_pred             EeccCceEEEEEcccCcEE------EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc------
Confidence            3445666666665443322      22345 4899999999998655 66777799999999988766554422      


Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE-----------------e-------------------------
Q psy8448         148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC-----------------L-------------------------  185 (482)
Q Consensus       148 ~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------------~-------------------------  185 (482)
                       |.+.|....|.|....+++++.|..+++|-..++..                 +                         
T Consensus       287 -h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~  365 (910)
T KOG1539|consen  287 -HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVI  365 (910)
T ss_pred             -ccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhh
Confidence             334555555555555555555555544442221000                 0                         


Q ss_pred             -----------------------------------------------------------------------EEee----c
Q psy8448         186 -----------------------------------------------------------------------RKLE----K  190 (482)
Q Consensus       186 -----------------------------------------------------------------------~~~~----~  190 (482)
                                                                                             ..+.    +
T Consensus       366 ~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~  445 (910)
T KOG1539|consen  366 SESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK  445 (910)
T ss_pred             HHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccc
Confidence                                                                                   0000    0


Q ss_pred             ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe---eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy8448         191 AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF---RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT  267 (482)
Q Consensus       191 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~  267 (482)
                      .....+++++.++.|++.+.|...|.|-+|++++|-....+   ..|.++|++++.+.-++.+++++.+|.+++||..+.
T Consensus       446 ~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  446 KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK  525 (910)
T ss_pred             ccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc
Confidence            12245788889999999999999999999999999888888   579999999999999999999999999999999998


Q ss_pred             ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         268 ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       268 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      .....+.    -...+..+..+... .+++++..|-.|+++|. +.+.++.+.+|   ...|++++|||||++|++++.|
T Consensus       526 ~l~~~l~----l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD  597 (910)
T KOG1539|consen  526 VLKKSLR----LGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKVVREFWGH---GNRITDMTFSPDGRWLISASMD  597 (910)
T ss_pred             ceeeeec----cCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecC
Confidence            8777774    35567778887776 78999999999999999 66777777766   8899999999999999999999


Q ss_pred             cEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHH
Q psy8448         347 MVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIE  426 (482)
Q Consensus       347 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  426 (482)
                      +.|+                  +||+.++                               .+                  
T Consensus       598 ~tIr------------------~wDlpt~-------------------------------~l------------------  610 (910)
T KOG1539|consen  598 STIR------------------TWDLPTG-------------------------------TL------------------  610 (910)
T ss_pred             CcEE------------------EEeccCc-------------------------------ce------------------
Confidence            9999                  6777777                               22                  


Q ss_pred             HHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecC-ceeecC
Q psy8448         427 LRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSED-GLLRFS  482 (482)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D-g~i~iW  482 (482)
                                 .           -...-..+++++.|||+|.+|||...| .-|++|
T Consensus       611 -----------I-----------D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  611 -----------I-----------DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             -----------e-----------eeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence                       1           111235678899999999999999987 678877

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=5.2e-24  Score=193.83  Aligned_cols=225  Identities=16%  Similarity=0.221  Sum_probs=164.3

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      ++.+++++.|+.|++||+.+++....+...         ..+.+++|+|+++.+ ++++.++.|++||..+++....+. 
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~---------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-   70 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG---------QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-   70 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECC---------CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-
Confidence            357889999999999999988876655432         346789999999876 556788999999999988777663 


Q ss_pred             ccCCCeEEEEEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC-cEEEEECCCCc
Q psy8448         191 AHSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG-TVKMWNLKTTE  268 (482)
Q Consensus       191 ~~~~~v~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg-~i~i~d~~~~~  268 (482)
                      .+ ..+..++|+|+++.++++ ..++.|++||+++.+.+..+.. ...+.+++|+|+++++++++.++ .+.+||.++++
T Consensus        71 ~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~  148 (300)
T TIGR03866        71 SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE  148 (300)
T ss_pred             CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence            33 335678999999877655 5689999999998887777653 34568899999999999888765 46778998877


Q ss_pred             eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCc----ccCcCEEEEEEcCCCCEEEEE
Q psy8448         269 CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGK----REGGDFLCCTTSPRGEWIYCV  343 (482)
Q Consensus       269 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~----~~~~~v~~~~~~~~g~~l~~~  343 (482)
                      ......    .......+.|+|++..+++++..++.|++||+ +++.+..+....    ........++|+|++++++++
T Consensus       149 ~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       149 IVDNVL----VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             EEEEEE----cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence            655443    12345779999998434455567999999999 455555443211    011223568899999986654


Q ss_pred             -eCCcEEEEE
Q psy8448         344 -GEDMVLVVR  352 (482)
Q Consensus       344 -~~dg~i~iw  352 (482)
                       +.++.+.+|
T Consensus       225 ~~~~~~i~v~  234 (300)
T TIGR03866       225 LGPANRVAVV  234 (300)
T ss_pred             cCCCCeEEEE
Confidence             556678833

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036|consensus

Probab=99.94  E-value=1e-24  Score=179.68  Aligned_cols=194  Identities=20%  Similarity=0.272  Sum_probs=158.9

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      ++.|..+.|+|.++.|++++.||.+++||+........+  .|..++.+++|.+ ...+++|+.||.|+.+|+.+++...
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence            478999999999999999999999999999888666666  4889999999986 4579999999999999998887544


Q ss_pred             EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         230 EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       230 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                       +..|..+|.||.+++....+++|+.|++|++||.+.......+.    ....|.++....   +.|++|+.+..+.+||
T Consensus        90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v~g---~~LvVg~~~r~v~iyD  161 (323)
T KOG1036|consen   90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDVSG---NRLVVGTSDRKVLIYD  161 (323)
T ss_pred             -eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc----cCceEEEEeccC---CEEEEeecCceEEEEE
Confidence             45599999999999988899999999999999999865555553    344788877654   6899999999999999


Q ss_pred             cCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         310 MQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ++............-...++|+++-|++.-.++++-||++.+=.+
T Consensus       162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~  206 (323)
T KOG1036|consen  162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYF  206 (323)
T ss_pred             cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEcc
Confidence            953222222222223677899999999999999999999995433

>KOG0321|consensus

Probab=99.94  E-value=3.4e-25  Score=199.25  Aligned_cols=286  Identities=16%  Similarity=0.215  Sum_probs=203.5

Q ss_pred             EEEcC---CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy8448         106 ARFSP---DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG  182 (482)
Q Consensus       106 ~~~s~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  182 (482)
                      ..|++   ....|+.+.+||.|.++|.......  +.......+..|...|..+.|.|....|++++.|.++++||++++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcc--hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            45555   3467889999999999997654322  222223456678999999999997788999999999999999998


Q ss_pred             eEeEE-eecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCc--------------------eE-------EEeec
Q psy8448         183 QCLRK-LEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGK--------------------ML-------KEFRG  233 (482)
Q Consensus       183 ~~~~~-~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~--------------------~~-------~~~~~  233 (482)
                      +.... +..+|...|.+++|.|.+ ..|++|+.||.|.|||++...                    +.       .....
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            87765 227999999999999954 568899999999999997432                    00       01122


Q ss_pred             cccceeE---EEEcCCCCEEEEEeC-CCcEEEEECCCCceeeeeeccC-----CC---ccceeEEEEcCCCCCEEEEEeC
Q psy8448         234 HSSFVND---ITFTADGHSVLSASS-DGTVKMWNLKTTECTSTFKSLG-----AS---DIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       234 ~~~~i~~---l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-----~~---~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      +...|.+   +.+..|...|++++. |+.|++||++............     .+   ...+.++.....| .++++.+.
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCt  291 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCT  291 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEec
Confidence            3444444   455568888998887 9999999999765443322211     12   3456777777778 55555566


Q ss_pred             CCeEEEEEcCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeeccccee
Q psy8448         302 TNTVVIMNMQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSL  378 (482)
Q Consensus       302 d~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (482)
                      |+.|++|++.+.   ++..+... ........-..+|++.+|++|+.|...++|                  .+.+.   
T Consensus       292 D~sIy~ynm~s~s~sP~~~~sg~-~~~sf~vks~lSpd~~~l~SgSsd~~ayiw------------------~vs~~---  349 (720)
T KOG0321|consen  292 DNSIYFYNMRSLSISPVAEFSGK-LNSSFYVKSELSPDDCSLLSGSSDEQAYIW------------------VVSSP---  349 (720)
T ss_pred             CCcEEEEeccccCcCchhhccCc-ccceeeeeeecCCCCceEeccCCCcceeee------------------eecCc---
Confidence            999999999532   22222222 112222345678999999999999999955                  44433   


Q ss_pred             ecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccce
Q psy8448         379 NTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLV  458 (482)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  458 (482)
                                                  .+                                      ....+.+|...|
T Consensus       350 ----------------------------e~--------------------------------------~~~~l~Ght~eV  363 (720)
T KOG0321|consen  350 ----------------------------EA--------------------------------------PPALLLGHTREV  363 (720)
T ss_pred             ----------------------------cC--------------------------------------ChhhhhCcceEE
Confidence                                        11                                      011567999999


Q ss_pred             eeccccCCc-ceEEEEecCceeecC
Q psy8448         459 IGLTHHPHQ-NLLGTYSEDGLLRFS  482 (482)
Q Consensus       459 ~~~~~sp~~-~~l~s~~~Dg~i~iW  482 (482)
                      ++++|.|.. .-+||+++|-+++||
T Consensus       364 t~V~w~pS~~t~v~TcSdD~~~kiW  388 (720)
T KOG0321|consen  364 TTVRWLPSATTPVATCSDDFRVKIW  388 (720)
T ss_pred             EEEeeccccCCCceeeccCcceEEE
Confidence            999998863 357788999999999

>KOG2055|consensus

Probab=99.94  E-value=3.1e-25  Score=192.10  Aligned_cols=269  Identities=16%  Similarity=0.278  Sum_probs=212.0

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      +++...++......-+  ..+.+. --..+|.+.+|.|+|. .+++++....++.||+.+.+....-......     +.
T Consensus       233 ~d~~lrifqvDGk~N~--~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e-----~~  304 (514)
T KOG2055|consen  233 LDGTLRIFQVDGKVNP--KLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE-----EK  304 (514)
T ss_pred             CCCcEEEEEecCccCh--hheeee-eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc-----cc
Confidence            4566666665554444  222222 3467999999999998 8999999999999999988865433322211     34


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF  231 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  231 (482)
                      .+.....+|++++|+..+..|.|.+....+++.+..+.  ..+.|..++|+.+++.|++++.+|.|.+||++...++..+
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf  382 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF  382 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence            67788899999999999999999999999999998884  5678999999999999999999999999999999999888


Q ss_pred             ecccc-ceeEEEEcCCCCEEEEEeCCCcEEEEECCC------CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC--C
Q psy8448         232 RGHSS-FVNDITFTADGHSVLSASSDGTVKMWNLKT------TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK--T  302 (482)
Q Consensus       232 ~~~~~-~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--d  302 (482)
                      ....+ .-+++|.++++.+|++|+..|.|.|||..+      .+++..+.   .-...|+++.|+|+. .+|+.++.  +
T Consensus       383 ~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~Itsl~Fn~d~-qiLAiaS~~~k  458 (514)
T KOG2055|consen  383 VDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAITSLQFNHDA-QILAIASRVKK  458 (514)
T ss_pred             eecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheeeeeeeeCcch-hhhhhhhhccc
Confidence            74322 235778889999999999999999999764      23333333   556789999999998 78887764  5


Q ss_pred             CeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         303 NTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       303 ~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ..+++-.+. ......+......-+.++|++|+|.|.+|+.|..+|.+.+|.+.
T Consensus       459 nalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  459 NALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             cceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            778888873 44445555554456789999999999999999999999988764

>KOG1063|consensus

Probab=99.94  E-value=1.4e-25  Score=203.65  Aligned_cols=344  Identities=15%  Similarity=0.189  Sum_probs=236.7

Q ss_pred             ecCCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEecCCCceee-----------------------ccccccccccccc
Q psy8448          96 KFGSKSHVECARFSPDG---QYLITGSVDGFIEVWNFTTGKIRK-----------------------DLKYQAQDNFMLM  149 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~---~~l~s~~~dg~v~iwd~~~~~~~~-----------------------~~~~~~~~~~~~h  149 (482)
                      +.||.+.|.+++|...+   -+||+++.|..|+||.+.-+....                       .+.......+.||
T Consensus       187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH  266 (764)
T KOG1063|consen  187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH  266 (764)
T ss_pred             eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence            45999999999998844   478999999999999875332110                       1112222345699


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeE--Eee----cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR--KLE----KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK  223 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~  223 (482)
                      ++.|.++.|+|.+..|++++.|.++.+|...+..-+.  ...    .+.........|+|++..+++-+..|..++|-.+
T Consensus       267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~  346 (764)
T KOG1063|consen  267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK  346 (764)
T ss_pred             ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence            9999999999999999999999999999876653221  111    2334568889999999999999999999999833


Q ss_pred             CC---ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448         224 SG---KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK-TTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       224 ~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                      ..   .....+.+|.+.|+.++|+|.|.+|++.+.|.+-|+|-.- ....-..+..++.|...++|+++-+.. ..|++|
T Consensus       347 d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSg  425 (764)
T KOG1063|consen  347 DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED-LQFVSG  425 (764)
T ss_pred             CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC-ceeeec
Confidence            32   2334567899999999999999999999999999998754 112233444455889999999999863 788889


Q ss_pred             eCCCeEEEEEcC-----------Cc----------------------EEE---E---------ecC--------------
Q psy8448         300 NKTNTVVIMNMQ-----------GQ----------------------IVR---S---------LSS--------------  320 (482)
Q Consensus       300 ~~d~~i~i~d~~-----------~~----------------------~~~---~---------~~~--------------  320 (482)
                      ..+..+|+|+..           +.                      ...   +         ...              
T Consensus       426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~  505 (764)
T KOG1063|consen  426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT  505 (764)
T ss_pred             ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence            888999998652           10                      000   0         000              


Q ss_pred             ---------------CcccCcCEEEEEEcCCCCEEEEEeCCc-----EEEEEeehhhhhhhcccccceeeeecccceeec
Q psy8448         321 ---------------GKREGGDFLCCTTSPRGEWIYCVGEDM-----VLVVRLIQQYLKESNLMKTLQCLQEETGVSLNT  380 (482)
Q Consensus       321 ---------------~~~~~~~v~~~~~~~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                                     -.+|...|.+++.+|+|+++|+++...     .|+                  +|+..+-.....
T Consensus       506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~------------------lw~t~~W~~~~~  567 (764)
T KOG1063|consen  506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIR------------------LWNTANWLQVQE  567 (764)
T ss_pred             HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEE------------------EEeccchhhhhe
Confidence                           112578899999999999999998654     455                  444444444444


Q ss_pred             ccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceee
Q psy8448         381 VDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIG  460 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  460 (482)
                      +..|+-.+..+..+-.+..+...     .-++...++....        ...+    .       ......+.|+..|.+
T Consensus       568 L~~HsLTVT~l~FSpdg~~LLsv-----sRDRt~sl~~~~~--------~~~~----e-------~~fa~~k~HtRIIWd  623 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDGRYLLSV-----SRDRTVSLYEVQE--------DIKD----E-------FRFACLKAHTRIIWD  623 (764)
T ss_pred             ecccceEEEEEEECCCCcEEEEe-----ecCceEEeeeeec--------ccch----h-------hhhccccccceEEEE
Confidence            44554444444433322222111     1111111111100        0000    0       001147789999999


Q ss_pred             ccccCCcceEEEEecCceeecC
Q psy8448         461 LTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       461 ~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      ..|+|++.++||+|.|.+|+||
T Consensus       624 csW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  624 CSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             cccCcccceeEEecCCceEEEE
Confidence            9999999999999999999998

>KOG2048|consensus

Probab=99.94  E-value=3.6e-24  Score=194.15  Aligned_cols=263  Identities=17%  Similarity=0.242  Sum_probs=208.7

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      .|.+-+|+.....+...   .+..+-...|.+++|++. ..|++.+.+|.|.-||+.+++....+...        .+.|
T Consensus        46 ~g~IEiwN~~~~w~~~~---vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~--------gg~I  113 (691)
T KOG2048|consen   46 DGNIEIWNLSNNWFLEP---VIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNIDSN--------GGAI  113 (691)
T ss_pred             CCcEEEEccCCCceeeE---EEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeEEecCC--------Ccce
Confidence            77888898877554332   333355678999999954 46778888999999999999887776655        4789


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  232 (482)
                      .+++.+|.+..++.|+.||.+..++...+....... .-..+.|.+++|+|++..|+.|+.||.|++||...+..+....
T Consensus       114 Wsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~  193 (691)
T KOG2048|consen  114 WSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIIT  193 (691)
T ss_pred             eEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEee
Confidence            999999999999999999988888887776543322 3345889999999999999999999999999999988766221


Q ss_pred             --------ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCe
Q psy8448         233 --------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT  304 (482)
Q Consensus       233 --------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~  304 (482)
                              ....-|.++.|-.++ .|++|...|+|.+||...+..++.+.   .|...|.+++..+++ ..+++++.|+.
T Consensus       194 ~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~~~-d~vfsaGvd~~  268 (691)
T KOG2048|consen  194 MQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVADNE-DRVFSAGVDPK  268 (691)
T ss_pred             ecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcCCC-CeEEEccCCCc
Confidence                    123346778877654 59999999999999999999988888   889999999999998 78999999999


Q ss_pred             EEEEEcCCc--EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         305 VVIMNMQGQ--IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       305 i~i~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      |..|...+.  ..........|...+.+++..++  .+++|+.|..+.+-...
T Consensus       269 ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  269 IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR  319 (691)
T ss_pred             eEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence            988888432  22223333345778999999877  89999999999965443

>KOG0301|consensus

Probab=99.94  E-value=1.6e-24  Score=196.80  Aligned_cols=253  Identities=23%  Similarity=0.363  Sum_probs=207.5

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEE-EEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVEC-ARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      ++.+.+|......+   +..+...+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|........        ..+.+|+.
T Consensus        34 d~t~~vw~~~~~~~---l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--------~~LkgH~s  102 (745)
T KOG0301|consen   34 DGTVKVWAKKGKQY---LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--------YTLKGHKS  102 (745)
T ss_pred             CCceeeeeccCccc---ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch--------hhhhcccc
Confidence            55677777654443   222344578888887 88886 5556999999999999998876544        44556789


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF  231 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  231 (482)
                      .|.+++...++. +++|+.|.++++|..  +++...+ .+|...|.+++.-|++ .+++|+.|.+|++|.-  ++.+++|
T Consensus       103 nVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l-~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf  175 (745)
T KOG0301|consen  103 NVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSL-QGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTF  175 (745)
T ss_pred             ceeeeecCCcCc-eEecccccceEEecc--hhhhccc-CCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhh
Confidence            999999888877 999999999999975  4555556 7999999999999988 7999999999999984  8889999


Q ss_pred             eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         232 RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       232 ~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      .+|.+.|..+++-+++. |++++.||.|++|++ +++++..+.   +|..-+.++...+++ ..+++++.|++++||+..
T Consensus       176 ~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  176 SGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEEEEecCCC-CeEEEecCCceEEEeecC
Confidence            99999999999998754 899999999999999 677777777   999999999976666 799999999999999985


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                       ...+.+.-.   ...++++.+-++|. +++|+.||.||||..+
T Consensus       250 -e~~q~I~lP---ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  250 -ECVQVITLP---TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             -ceEEEEecC---ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence             444444432   55788888888886 6679999999999765

>KOG1063|consensus

Probab=99.94  E-value=3.4e-24  Score=194.69  Aligned_cols=265  Identities=17%  Similarity=0.238  Sum_probs=201.6

Q ss_pred             ceeeecCCCCcEEEEEEcCCCC---EEEEEeCCCeEEEEecCCCceeecccc----------------------------
Q psy8448          92 SKQIKFGSKSHVECARFSPDGQ---YLITGSVDGFIEVWNFTTGKIRKDLKY----------------------------  140 (482)
Q Consensus        92 ~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~----------------------------  140 (482)
                      ....+.||.++|+|+.|-|+.+   ++++|+.||.|.+|.++..........                            
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v  125 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSV  125 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEE
Confidence            4455669999999999999877   899999999999998762111100000                            


Q ss_pred             --------------------------------------------------------ccccccccccccEEEEEEcCCC--
Q psy8448         141 --------------------------------------------------------QAQDNFMLMEEAVMSLAYSRDS--  162 (482)
Q Consensus       141 --------------------------------------------------------~~~~~~~~h~~~i~~l~~~~~~--  162 (482)
                                                                              .....+.||.+.|.+++|...+  
T Consensus       126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~  205 (764)
T KOG1063|consen  126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD  205 (764)
T ss_pred             eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence                                                                    0012345789999999998744  


Q ss_pred             -CEEEEEeCCCcEEEEEcCCCe------------------------EeE------EeecccCCCeEEEEEccCCCEEEEE
Q psy8448         163 -EMLASGSQSGKVKIWKIATGQ------------------------CLR------KLEKAHSLGVTCIQFSRDNSQILTA  211 (482)
Q Consensus       163 -~~l~~~~~dg~i~iwd~~~~~------------------------~~~------~~~~~~~~~v~~i~~~~~~~~l~~~  211 (482)
                       -+|++++.|..|+||.+.-+.                        .+.      .+..+|..-|.++.|+|.+..|+++
T Consensus       206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA  285 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA  285 (764)
T ss_pred             cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence             388899999999999874322                        011      1124899999999999999999999


Q ss_pred             ECCCeEEEEeCCCCceE-------EEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcccee
Q psy8448         212 SFDTYVRIHGLKSGKML-------KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVN  284 (482)
Q Consensus       212 ~~dg~i~i~d~~~~~~~-------~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  284 (482)
                      +.|.++.+|...+..-+       ..+.+........-|+|+++.+++-+..|..++|-......-.....+.+|-..|.
T Consensus       286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~  365 (764)
T KOG1063|consen  286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK  365 (764)
T ss_pred             ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence            99999999987665321       22233445578899999999999999999999999444332233334459999999


Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhh
Q psy8448         285 SIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       285 ~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                      .++|.|.| +++++.+.|-+-|+|-.-  ......+.....|...++|+++-+....+++|.+...+|+|+.++.
T Consensus       366 dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~  439 (764)
T KOG1063|consen  366 DVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKS  439 (764)
T ss_pred             eeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHH
Confidence            99999999 899999999999999873  3345666667777899999999886677888999999999988744

>KOG4328|consensus

Probab=99.94  E-value=4.6e-25  Score=190.89  Aligned_cols=250  Identities=16%  Similarity=0.241  Sum_probs=187.8

Q ss_pred             ecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCC
Q psy8448          96 KFGSKSHVECARFSPDG--QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSG  172 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg  172 (482)
                      ..-|..+|++++|+|..  +++|+|..-|+|-+||+.+.+.    .......+..|..+|.+|.|+| +-..+++.++||
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----ccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            33578899999999944  6889999999999999963221    1222234455789999999999 556899999999


Q ss_pred             cEEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce-EEEeeccccceeEEEEcCCC-CE
Q psy8448         173 KVKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM-LKEFRGHSSFVNDITFTADG-HS  249 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~l~~~~~~-~~  249 (482)
                      +|++-|++.+..-..+. ......+..+.|+.+...++.+..=|...+||++++.. ...+.-|...|.+++++|.. .+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            99999998764322221 12445577888988888888888888999999998765 66677788899999999955 56


Q ss_pred             EEEEeCCCcEEEEECCCCceeee-eeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC----C-cEEEEecCCcc
Q psy8448         250 VLSASSDGTVKMWNLKTTECTST-FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ----G-QIVRSLSSGKR  323 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~----~-~~~~~~~~~~~  323 (482)
                      |++++.|++.+|||++....... +-....|...|.+..|+|.+.. +++.+.|+.|+|||..    . .++..+.....
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~  416 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR  416 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCc
Confidence            88999999999999997544332 2222378999999999999955 9999999999999983    1 22222221111


Q ss_pred             cCc--CEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         324 EGG--DFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       324 ~~~--~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +..  .....+|.|+..++++|-.-..|-
T Consensus       417 t~RwlT~fKA~W~P~~~li~vg~~~r~ID  445 (498)
T KOG4328|consen  417 TGRWLTPFKAAWDPDYNLIVVGRYPRPID  445 (498)
T ss_pred             ccccccchhheeCCCccEEEEeccCccee
Confidence            111  234578999999999998877777

>KOG1408|consensus

Probab=99.94  E-value=6.5e-25  Score=199.90  Aligned_cols=246  Identities=15%  Similarity=0.268  Sum_probs=209.2

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC---CCCEEEEEeCCCcE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR---DSEMLASGSQSGKV  174 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~---~~~~l~~~~~dg~i  174 (482)
                      +.+..|.+++.||+|++||+|..-|.++||++.+.+....+.        .|+.+|.|+.|+.   ..++||+++.|..|
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--------AHesEilcLeyS~p~~~~kLLASasrdRlI  528 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME--------AHESEILCLEYSFPVLTNKLLASASRDRLI  528 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee--------cccceeEEEeecCchhhhHhhhhccCCceE
Confidence            556789999999999999999999999999998766544433        4689999999986   45789999999999


Q ss_pred             EEEEcCCCeE-eEEeecccCCCeEEEEEccCC--CEEEEEECCCeEEEEeCCCCceEEEeec-----cccceeEEEEcCC
Q psy8448         175 KIWKIATGQC-LRKLEKAHSLGVTCIQFSRDN--SQILTASFDTYVRIHGLKSGKMLKEFRG-----HSSFVNDITFTAD  246 (482)
Q Consensus       175 ~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~l~~~~~  246 (482)
                      .|||+..+-. +.++ .+|...|+++.|..+|  ..+++++.|..|.+--.+.......+..     ....+..|+..|.
T Consensus       529 HV~Dv~rny~l~qtl-d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~  607 (1080)
T KOG1408|consen  529 HVYDVKRNYDLVQTL-DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT  607 (1080)
T ss_pred             EEEecccccchhhhh-cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence            9999976644 4445 7899999999998877  6789999999887644332111122221     2346889999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccC
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREG  325 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~  325 (482)
                      .+++++++.|..|+|||+.+++..+.|+....|++....+...|.| .++++.+.|.++.++|+ .|+.+.++.+|   .
T Consensus       608 ~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEcvA~m~GH---s  683 (1080)
T KOG1408|consen  608 SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGECVAQMTGH---S  683 (1080)
T ss_pred             cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchhhhhhcCc---c
Confidence            9999999999999999999999999999888888888999999999 89999999999999999 89998888876   7


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         326 GDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       326 ~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      ..|+.+.|.+|-+.|++.+.||.|.||.++.
T Consensus       684 E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  684 EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hheeeeeecccchhheeecCCceEEEEECch
Confidence            8899999999999999999999999998874

>KOG0270|consensus

Probab=99.93  E-value=5.9e-25  Score=189.60  Aligned_cols=248  Identities=20%  Similarity=0.332  Sum_probs=190.8

Q ss_pred             EEEEEEcC-------CCCEEEEEeCCCeEEEEecCCCcee-ecccc------------ccccccccccccEEEEEEcCC-
Q psy8448         103 VECARFSP-------DGQYLITGSVDGFIEVWNFTTGKIR-KDLKY------------QAQDNFMLMEEAVMSLAYSRD-  161 (482)
Q Consensus       103 v~~~~~s~-------~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~------------~~~~~~~~h~~~i~~l~~~~~-  161 (482)
                      -.|+.|..       .|+++|.|+.|..|.|||+.--... ..+..            .......+|++.|..|+|+.. 
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            35666643       3689999999999999998622110 00000            011123468999999999984 


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeE
Q psy8448         162 SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND  240 (482)
Q Consensus       162 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  240 (482)
                      .+.||+|+.|.+|++||+.++++...+ ..|...|.++.|+| ....|++|+.|++|.+.|+|........-...+.|-.
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk  334 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK  334 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence            568999999999999999999999998 68999999999999 5678999999999999999954332222224677999


Q ss_pred             EEEcCCC-CEEEEEeCCCcEEEEECCCC-ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEe
Q psy8448         241 ITFTADG-HSVLSASSDGTVKMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL  318 (482)
Q Consensus       241 l~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  318 (482)
                      ++|.|.. ..+++++.||+|+-+|+|+. +++.+++   .|..+|.++++++..+.++++++.|+.+++|++.+......
T Consensus       335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v  411 (463)
T KOG0270|consen  335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV  411 (463)
T ss_pred             EEecCCCceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence            9999954 56778889999999999986 7788887   99999999999999999999999999999999954433333


Q ss_pred             cCCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEee
Q psy8448         319 SSGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLI  354 (482)
Q Consensus       319 ~~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~  354 (482)
                      ..+...-+...|+++.|+-. +++.|+..+.++||++
T Consensus       412 ~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  412 KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             ccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence            33322245567888888854 5667888888996654

>KOG0267|consensus

Probab=99.93  E-value=2.9e-26  Score=208.94  Aligned_cols=236  Identities=22%  Similarity=0.396  Sum_probs=210.1

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      .|...|.|+..-..++.+++|+.|..+-+|.+..-..+.        .+.+|+.+|.++.|++...+|++|+.+|+|++|
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------S~~~hespIeSl~f~~~E~LlaagsasgtiK~w   97 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------SLTGHESPIESLTFDTSERLLAAGSASGTIKVW   97 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--------eeeccCCcceeeecCcchhhhcccccCCceeee
Confidence            688899999997788999999999999999876543332        356789999999999999999999999999999


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      |++.++.++.+ .+|...+.++.|+|-+.+.+.|+.|+.+.+||++...+...+.+|...+..+.|+|+|++++.++.|.
T Consensus        98 DleeAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen   98 DLEEAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             ehhhhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence            99999999988 79999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPR  336 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~  336 (482)
                      .++|||...|+....|.   .|...+..+.|+|.. .+++.|+.|+++++||++ -..+.....   ....|.+.+|+|+
T Consensus       177 tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~---~~~~v~~~~fn~~  249 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSGKP---ETDGVRSLAFNPD  249 (825)
T ss_pred             eeeeecccccccccccc---cccccccccccCchh-hhhccCCCCceeeeeccceeEEeeccCC---ccCCceeeeecCC
Confidence            99999999999998887   889999999999987 788999999999999995 333333333   2678999999999


Q ss_pred             CCEEEEEeCCcEE
Q psy8448         337 GEWIYCVGEDMVL  349 (482)
Q Consensus       337 g~~l~~~~~dg~i  349 (482)
                      +..+++|......
T Consensus       250 ~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  250 GKIVLSGEQISLS  262 (825)
T ss_pred             ceeeecCchhhhh
Confidence            9999988765443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=9.8e-23  Score=185.42  Aligned_cols=258  Identities=17%  Similarity=0.192  Sum_probs=184.0

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      ++.+.+|+.....    ....+ .+| ..+.+++|+|+++.+ ++++.++.|++||+.+++....+...         ..
T Consensus        10 d~~v~~~d~~t~~----~~~~~-~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~   74 (300)
T TIGR03866        10 DNTISVIDTATLE----VTRTF-PVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG---------PD   74 (300)
T ss_pred             CCEEEEEECCCCc----eEEEE-ECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC---------CC
Confidence            4556666654322    12222 233 346789999999876 56678899999999988766544322         23


Q ss_pred             EEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC-eEEEEeCCCCceEEE
Q psy8448         153 VMSLAYSRDSEMLASG-SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-YVRIHGLKSGKMLKE  230 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~  230 (482)
                      +..++|+|+++.++++ +.++.+++||+.+.+.+..+.  +...+.+++|+|++.+++++..++ .+.+||.++++....
T Consensus        75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~  152 (300)
T TIGR03866        75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN  152 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence            5678999999977665 468999999999888777663  234468899999999999888765 577789988877655


Q ss_pred             eeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeeeccC--C--CccceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         231 FRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTECTSTFKSLG--A--SDIAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~--~--~~~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                      +. ....+.+++|+|++++|++++ .++.|.+||+++++....+....  .  .......++|+|++..++++...++.+
T Consensus       153 ~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i  231 (300)
T TIGR03866       153 VL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV  231 (300)
T ss_pred             EE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence            44 234567899999999886554 58999999999988766554210  0  112234688999994445555667789


Q ss_pred             EEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEE-eCCcEEEEEe
Q psy8448         306 VIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV-GEDMVLVVRL  353 (482)
Q Consensus       306 ~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~-~~dg~i~iw~  353 (482)
                      .+||.. ++....+..    ...+.+++|+|+|++|+++ +.+|.|.+||
T Consensus       232 ~v~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       232 AVVDAKTYEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             EEEECCCCcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            999994 555444432    3467899999999999886 4689999443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646|consensus

Probab=99.93  E-value=1.8e-24  Score=187.87  Aligned_cols=228  Identities=24%  Similarity=0.347  Sum_probs=189.5

Q ss_pred             CEEEEEe-CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc
Q psy8448         113 QYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA  191 (482)
Q Consensus       113 ~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  191 (482)
                      .+++++. .-..|.+|.+...........-        .++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+ ..
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~--------Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~a  121 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVL--------PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SA  121 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhccc--------ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-Hh
Confidence            4666664 3457999998766544422222        478999999999999999999999999999999999888 78


Q ss_pred             cCCCeEEEEEccCCCEEEEEECCCeEEEEeCC---------CCceEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEE
Q psy8448         192 HSLGVTCIQFSRDNSQILTASFDTYVRIHGLK---------SGKMLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVK  260 (482)
Q Consensus       192 ~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~  260 (482)
                      |-..|+|+.|+-||.+|++|+.||.|.+|++-         +.+++..+..|.-+|+++...+.  ..++++++.|.+++
T Consensus       122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k  201 (476)
T KOG0646|consen  122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK  201 (476)
T ss_pred             hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence            99999999999999999999999999999863         34678889999999999998764  46799999999999


Q ss_pred             EEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-----------------EEEEecCCcc
Q psy8448         261 MWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ-----------------IVRSLSSGKR  323 (482)
Q Consensus       261 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------------~~~~~~~~~~  323 (482)
                      +||+..+..+.++    ..+..+.+++..|.+ ..+++|+.+|.|.+.++.+-                 ....+.++. 
T Consensus       202 ~wdlS~g~LLlti----~fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~-  275 (476)
T KOG0646|consen  202 LWDLSLGVLLLTI----TFPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE-  275 (476)
T ss_pred             EEEeccceeeEEE----ecCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecccc-
Confidence            9999999988888    557789999999988 89999999999998887311                 122223332 


Q ss_pred             cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       324 ~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ....|+|++++-||..|++|+.||.+.|||+.
T Consensus       276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             CCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            13499999999999999999999999977765

>KOG0302|consensus

Probab=99.93  E-value=4.7e-24  Score=180.27  Aligned_cols=250  Identities=21%  Similarity=0.304  Sum_probs=191.2

Q ss_pred             cCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEecCC--------CceeeccccccccccccccccEEEEEEcC-CCCEE
Q psy8448          97 FGSKSHVECARFSPDG--QYLITGSVDGFIEVWNFTT--------GKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEML  165 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~--~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l  165 (482)
                      .+|.+.++.+.-++-+  .+.|+=+..|.|.||++..        +-........+...+.+|...=++|+||| ....|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            4788999999888855  4455557889999999752        11222233445566778899999999999 22358


Q ss_pred             EEEeCCCcEEEEEcCCCeEe---EEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCc---eEEEeeccccce
Q psy8448         166 ASGSQSGKVKIWKIATGQCL---RKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGK---MLKEFRGHSSFV  238 (482)
Q Consensus       166 ~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i  238 (482)
                      ++|..-+.|++|...++...   ..+ .+|...|-.++|+| ....|++|+.||+|+|||+|.+.   ++.+ +.|.+.|
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV  305 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV  305 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccc-cccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence            88888889999998887543   233 46999999999999 45689999999999999999883   3333 7899999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--Cc
Q psy8448         239 NDITFTADGHSVLSASSDGTVKMWNLKTT---ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQ  313 (482)
Q Consensus       239 ~~l~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~  313 (482)
                      +.|.|+....+|++|+.||+++|||+++.   +++..|+   .|..+|++|.|+|.....+++++.|.+|.+||+.  ..
T Consensus       306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk---~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK---YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE---eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            99999998889999999999999999874   4556666   8999999999999988999999999999999983  11


Q ss_pred             -------EEEE-------ecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEE
Q psy8448         314 -------IVRS-------LSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVV  351 (482)
Q Consensus       314 -------~~~~-------~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~i  351 (482)
                             ....       +...+.....+..+.|+++- .+|++.+.||.-.+
T Consensus       383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf  435 (440)
T KOG0302|consen  383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF  435 (440)
T ss_pred             hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence                   1111       11111124567788998873 46777777776553

>KOG4378|consensus

Probab=99.92  E-value=6.1e-24  Score=185.77  Aligned_cols=271  Identities=17%  Similarity=0.216  Sum_probs=202.3

Q ss_pred             eeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeeccccccccccc
Q psy8448          69 TIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM  147 (482)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  147 (482)
                      .++...+.+.+|+............+.. .|  .+.++.|+....++ ++.+.|..|++|.-. |+ ...++.-  ....
T Consensus         6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~-~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~-~~~Vp~~--~k~~   78 (673)
T KOG4378|consen    6 HVASTGDKTKLSDFSDLETKSEYVHQTA-EP--GDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GK-TPEVPRV--RKLT   78 (673)
T ss_pred             eeeccCCceEEeecccccCccccccCCC-CC--cceeeeccccceEEEeecCCceeEEEeccc-CC-CCcccee--eccc
Confidence            3445566778888776655555544332 23  39999999866422 334578899999743 33 1111110  0111


Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce
Q psy8448         148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM  227 (482)
Q Consensus       148 ~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~  227 (482)
                        .+.-.|++......|+++|+..+.|+|||++...+.+.+ +.|...|+++.++-...+|++++..|.|.|..+.++..
T Consensus        79 --gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l-kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~  155 (673)
T KOG4378|consen   79 --GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFL-KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK  155 (673)
T ss_pred             --cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhc-cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence              123445555555689999999999999999855444555 89999999999999999999999999999999999887


Q ss_pred             EEEeecc-ccceeEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         228 LKEFRGH-SSFVNDITFTADGHS-VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       228 ~~~~~~~-~~~i~~l~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                      ..+|... ...|.-+.|+|..+. |.+++.+|.|.+||+....++..+..  .|..+...|+|+|....+|++.+.|..|
T Consensus       156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~Dkki  233 (673)
T KOG4378|consen  156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEALLVSVGYDKKI  233 (673)
T ss_pred             ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh--hccCCcCcceecCCccceEEEecccceE
Confidence            7777744 345668999997665 55688999999999998777666543  8899999999999998999999999999


Q ss_pred             EEEEcCCc-EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         306 VIMNMQGQ-IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       306 ~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      .+||...+ ....+..    ..+...++|+++|.+|++|+..|.|+.||++
T Consensus       234 ~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  234 NIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             EEeecccccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            99999543 3333333    5678999999999999999999999965554

>KOG1034|consensus

Probab=99.92  E-value=1.6e-23  Score=174.09  Aligned_cols=262  Identities=18%  Similarity=0.274  Sum_probs=194.1

Q ss_pred             ccccccceeeecCCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC
Q psy8448          86 KYPTQLSKQIKFGSKSHVECARFSP-----DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR  160 (482)
Q Consensus        86 ~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~  160 (482)
                      +.+..+..+++.+|+.+|..++|++     ....+|+.+ ...+.+|+......+..++.-.   -..|++....++|+-
T Consensus        24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~---D~d~~Esfytcsw~y   99 (385)
T KOG1034|consen   24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYA---DEDHDESFYTCSWSY   99 (385)
T ss_pred             ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeecc---CCCCCcceEEEEEEe
Confidence            4667778888889999999999986     234566665 4679999876543222222111   113567788888876


Q ss_pred             C----CCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEe---e
Q psy8448         161 D----SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEF---R  232 (482)
Q Consensus       161 ~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~  232 (482)
                      +    ..++|+++.-|.|+|.|+.+++....+ .+|...|+.+.++|+. +++++++.|..|++|++++..++..+   .
T Consensus       100 d~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e  178 (385)
T KOG1034|consen  100 DSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE  178 (385)
T ss_pred             cCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence            4    458999999999999999999999888 7999999999999954 78899999999999999999999887   4


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee-------------------------eeccCCCccceeEEE
Q psy8448         233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTST-------------------------FKSLGASDIAVNSIH  287 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------------~~~~~~~~~~v~~i~  287 (482)
                      +|.+.|.++.|++++.+|++++.|..|++|++...+....                         +.....|...|-|+.
T Consensus       179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr  258 (385)
T KOG1034|consen  179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR  258 (385)
T ss_pred             cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence            6999999999999999999999999999999984321111                         111124556666666


Q ss_pred             EcCCCCCEEEEEeCCCeEEEEEc-C-CcEEEEe----------cCCcccCcCEE--EEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         288 LLPKNTEHFVVCNKTNTVVIMNM-Q-GQIVRSL----------SSGKREGGDFL--CCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       288 ~~~~~~~~l~~~~~d~~i~i~d~-~-~~~~~~~----------~~~~~~~~~v~--~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      |.-   +++++-+-++.|..|.. + ++.+...          .........++  ..+|+|-++.||.|...|.+++|+
T Consensus       259 w~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwd  335 (385)
T KOG1034|consen  259 WFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWD  335 (385)
T ss_pred             HHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEE
Confidence            654   68888889999999987 2 1111111          11111234444  456677799999999999999665


Q ss_pred             eh
Q psy8448         354 IQ  355 (482)
Q Consensus       354 ~~  355 (482)
                      ++
T Consensus       336 L~  337 (385)
T KOG1034|consen  336 LD  337 (385)
T ss_pred             CC
Confidence            54

>KOG0267|consensus

Probab=99.92  E-value=1.4e-25  Score=204.56  Aligned_cols=221  Identities=19%  Similarity=0.377  Sum_probs=194.2

Q ss_pred             CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeeccc
Q psy8448         113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAH  192 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  192 (482)
                      .+++....+-.+++||.+..              ..|...+.++..-..++.+++|+.|..+-+|.+.....+..+ .+|
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~~--------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~h   69 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTREF--------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGH   69 (825)
T ss_pred             cccceeeeeeccccccchhh--------------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-ecc
Confidence            34455555556777875532              225677888888778889999999999999998777777777 799


Q ss_pred             CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q psy8448         193 SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTST  272 (482)
Q Consensus       193 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  272 (482)
                      ..+|.++.|++....|++|+.+|+|++||++..+.++++.+|...+.++.|+|-+.+++.|+.|+.+.+||.+...|...
T Consensus        70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~  149 (825)
T KOG0267|consen   70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT  149 (825)
T ss_pred             CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448         273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV  351 (482)
Q Consensus       273 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~i  351 (482)
                      +.   +|...+..+.|+|+| .+++.++.|..+++||. .|+....|..+   .+.+..+.|+|..-+++.|+.|+++++
T Consensus       150 ~~---s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~~ef~~~---e~~v~sle~hp~e~Lla~Gs~d~tv~f  222 (825)
T KOG0267|consen  150 YK---SHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLSKEFKSH---EGKVQSLEFHPLEVLLAPGSSDRTVRF  222 (825)
T ss_pred             ec---CCcceeEEEeecCCC-ceeeccCCcceeeeecccccccccccccc---cccccccccCchhhhhccCCCCceeee
Confidence            88   788899999999999 89999999999999999 68888888876   788899999999999999999999996


Q ss_pred             Eeeh
Q psy8448         352 RLIQ  355 (482)
Q Consensus       352 w~~~  355 (482)
                      ||++
T Consensus       223 ~dle  226 (825)
T KOG0267|consen  223 WDLE  226 (825)
T ss_pred             eccc
Confidence            6654

>KOG2919|consensus

Probab=99.92  E-value=3.6e-23  Score=171.58  Aligned_cols=247  Identities=15%  Similarity=0.276  Sum_probs=182.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeec------cccccccccccccccEEEEEEc-------CCCCEEEEE
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD------LKYQAQDNFMLMEEAVMSLAYS-------RDSEMLASG  168 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~~~h~~~i~~l~~~-------~~~~~l~~~  168 (482)
                      -...+.|+|||.-|++-+.|..+.+|++...-.-..      +..+..... .....|...+|-       |+.+++++.
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeec
Confidence            345678999999999999999999999863221111      111100000 013457777775       567899999


Q ss_pred             eCCCcEEEEEcCCCeEeEEeec-ccC---CCeEEEEEccCCCEEEEEECCCeEEEEeC-CCCceEE--E-e----ecccc
Q psy8448         169 SQSGKVKIWKIATGQCLRKLEK-AHS---LGVTCIQFSRDNSQILTASFDTYVRIHGL-KSGKMLK--E-F----RGHSS  236 (482)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~~~~~-~~~---~~v~~i~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~--~-~----~~~~~  236 (482)
                      +.+.-|++||.-+|+....+.. .|.   ....+++|+|||.+|++|. ...|+++|+ +.|....  . +    .+..+
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            9999999999999987766521 122   2457899999999998876 789999999 5554221  1 1    23467


Q ss_pred             ceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE-eCCCeEEEEEcC--C
Q psy8448         237 FVNDITFTADG-HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC-NKTNTVVIMNMQ--G  312 (482)
Q Consensus       237 ~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~d~~i~i~d~~--~  312 (482)
                      -|.+++|+|.. ..+++++....+-||.-..+.+...+.   +|.+.|+.+.|.++|. .|++| -.+..|..||++  .
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhcc
Confidence            78999999954 488999999999999988888877776   9999999999999995 55555 467899999994  5


Q ss_pred             cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         313 QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       313 ~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      .++..+..+......-.-+...|+|++|++|+.||.|++||+
T Consensus       285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl  326 (406)
T KOG2919|consen  285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL  326 (406)
T ss_pred             chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence            667777766543334445777899999999999999995544

>KOG4283|consensus

Probab=99.92  E-value=4.1e-23  Score=169.10  Aligned_cols=266  Identities=22%  Similarity=0.318  Sum_probs=203.7

Q ss_pred             CCccccccccccccc--------cc--cceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          74 RGKAAMKDQEEEKYP--------TQ--LSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~--------~~--~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      ++.+.+|+.++...-        ..  ..++-..+|+-.|..+.|-| |...+.+++.|.++++||.++.+....+..+ 
T Consensus        65 dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-  143 (397)
T KOG4283|consen   65 DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-  143 (397)
T ss_pred             CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC-
Confidence            666777776544311        01  12233458899999999999 7778899999999999999998887777654 


Q ss_pred             ccccccccccEEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCE-EEEEECCCeEE
Q psy8448         143 QDNFMLMEEAVMSLAYSR---DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQ-ILTASFDTYVR  218 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~  218 (482)
                              +.|.+-+++|   ..-++|+|..|-.|++.|+.+|.....+ .+|...|.++.|+|...+ |++|+.||.|+
T Consensus       144 --------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~ir  214 (397)
T KOG4283|consen  144 --------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIR  214 (397)
T ss_pred             --------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-ccccCceEEEEeccCceeEEEecCCCceEE
Confidence                    6788889998   3447788888999999999999999999 799999999999997765 67899999999


Q ss_pred             EEeCCCC-ceEEEe--------------eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc--
Q psy8448         219 IHGLKSG-KMLKEF--------------RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI--  281 (482)
Q Consensus       219 i~d~~~~-~~~~~~--------------~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--  281 (482)
                      +||++.. .+...+              ..|.+.+..++|..++.++++.+.|..+++|+..+|+....-.....++.  
T Consensus       215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~  294 (397)
T KOG4283|consen  215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT  294 (397)
T ss_pred             EEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence            9999854 232222              35778899999999999999999999999999998864322111111111  


Q ss_pred             -ceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         282 -AVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       282 -~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                       .-..+. +.+. ..++.--.++.+.++++ .+..++.+..+   ...+.|.++.|+=+...+|..|+.++.|..
T Consensus       295 ~~~~~~~-~~~s-~vfv~~p~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  295 SFAVHIQ-SMDS-DVFVLFPNDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             cceEEEe-eccc-ceEEEEecCCeEEEEEccCceEEEeeecc---cceeeEEeecCchhhhhccccCCccccccc
Confidence             111122 2222 44555556689999998 78888888876   678899999999999999999999997754

>KOG1445|consensus

Probab=99.92  E-value=2.3e-23  Score=187.53  Aligned_cols=170  Identities=19%  Similarity=0.263  Sum_probs=132.8

Q ss_pred             eeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          94 QIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      -++.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+-....  ..+...+.+.+-.+.++.|+|...-|+..+..|
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L--Sape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL--SAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc--CCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            45669999999999999 667899999999999999985543221  111112222345788999999766677777789


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC-CceEEEeeccccc-eeEEEEcCCCCEE
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS-GKMLKEFRGHSSF-VNDITFTADGHSV  250 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~-i~~l~~~~~~~~l  250 (482)
                      .++|||+.+++.+..+ .+|...|.++.|+.||..+++++.|..|+|||.+. ++.++...+|.+. =..+.|.-+-..|
T Consensus       151 ~v~i~D~stqk~~~el-~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl  229 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVEL-SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL  229 (1012)
T ss_pred             eEEEEEcccCceeecc-cCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence            9999999999999988 79999999999999999999999999999999985 5677777877663 2346676554466


Q ss_pred             EEEeCC----CcEEEEECCC
Q psy8448         251 LSASSD----GTVKMWNLKT  266 (482)
Q Consensus       251 ~~~~~d----g~i~i~d~~~  266 (482)
                      ++.+.+    ..|++||.+.
T Consensus       230 isTGF~~~R~reV~~~Dtr~  249 (1012)
T KOG1445|consen  230 ISTGFTTKRIREVRAYDTRK  249 (1012)
T ss_pred             hhcccchhhheeeeeeeccc
Confidence            665543    5689999876

>KOG1538|consensus

Probab=99.91  E-value=5.9e-23  Score=185.93  Aligned_cols=232  Identities=23%  Similarity=0.338  Sum_probs=188.0

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT  181 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~  181 (482)
                      .|..++|-|||..|+.+. +..+.+||.+.|..+.+++        +|.+.|++++|+.+|+.+++|+.|..|.+|+.+-
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLK--------gHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLK--------GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL   84 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccc--------cccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence            799999999999888775 4569999999988776655        4589999999999999999999999999998543


Q ss_pred             CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEE
Q psy8448         182 GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM  261 (482)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i  261 (482)
                       +  ..+...|...|.|+.|+|-...+++++.+ ..-+|....... ...+ ....+.+.+|..||++++.|-.+|+|.+
T Consensus        85 -E--G~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsi  158 (1081)
T KOG1538|consen   85 -E--GILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISI  158 (1081)
T ss_pred             -c--ceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEe
Confidence             2  22334699999999999988889988744 466787654432 2222 3456889999999999999999999998


Q ss_pred             EECCCCceeeeeeccCCCccceeEEEEcCCCC----CEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         262 WNLKTTECTSTFKSLGASDIAVNSIHLLPKNT----EHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       262 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      -+ .+++....+....+.+.+|.+++|+|..+    ..+++.....++.+|.+.|+.+..-..-   .....|+.+.++|
T Consensus       159 RN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L---~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  159 RN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL---NFDPCCISYFTNG  234 (1081)
T ss_pred             ec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC---CCCchhheeccCC
Confidence            86 45666666776778899999999999742    5788888889999999988877644333   4556899999999


Q ss_pred             CEEEEEeCCcEEEEE
Q psy8448         338 EWIYCVGEDMVLVVR  352 (482)
Q Consensus       338 ~~l~~~~~dg~i~iw  352 (482)
                      .++..|+.|+.+.+|
T Consensus       235 Ey~LiGGsdk~L~~f  249 (1081)
T KOG1538|consen  235 EYILLGGSDKQLSLF  249 (1081)
T ss_pred             cEEEEccCCCceEEE
Confidence            999999999999954

>KOG4227|consensus

Probab=99.91  E-value=5.7e-23  Score=174.72  Aligned_cols=319  Identities=14%  Similarity=0.134  Sum_probs=220.1

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      +.+|.+.|+++.|+.++++||+|+.|..+++|++...-...+ +.+-...-..|...|.|++|...+..+++|+.+++|.
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-CCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            349999999999999999999999999999999864321111 1111112233678999999999999999999999999


Q ss_pred             EEEcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc-eE--EEeeccccceeEEEEcCCC-CEE
Q psy8448         176 IWKIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK-ML--KEFRGHSSFVNDITFTADG-HSV  250 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~--~~~~~~~~~i~~l~~~~~~-~~l  250 (482)
                      ..|+++.+.+..+... ..+.|..+..+|..+.+++.+.++.|.+||.+... +.  ..+.........+.|+|.. .+|
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI  210 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence            9999999888876321 23489999999988899999999999999998765 22  2222345567788999954 567


Q ss_pred             EEEeCCCcEEEEECCCCce-ee---eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCccc--
Q psy8448         251 LSASSDGTVKMWNLKTTEC-TS---TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE--  324 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~~-~~---~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--  324 (482)
                      ++.+..+-+.+||.+.... +.   .+..+........++.|+|.| ..|++--....-.+||+-.+.+..+...+.+  
T Consensus       211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            7788888899999986432 11   112121223344678999999 5666666666667888855444444433222  


Q ss_pred             ---CcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhc
Q psy8448         325 ---GGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLK  401 (482)
Q Consensus       325 ---~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (482)
                         ...+.+++|..|- -+++|+.+-.|++|.++......             |              ....|....   
T Consensus       290 Y~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~-------------G--------------~~~IG~~~~---  338 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSY-------------G--------------FTQIGHDEE---  338 (609)
T ss_pred             ceeeeeeeeeeeecce-eeeccCcccceEEEecCCCcccc-------------C--------------ccccCcchh---
Confidence               2345577887554 48999999999988765211100             0              000000000   


Q ss_pred             cccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeec
Q psy8448         402 SVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRF  481 (482)
Q Consensus       402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~i  481 (482)
                           .++..-.                              .-.....++||..-++.+.|+|...+|++.+-...++|
T Consensus       339 -----~~~~~~~------------------------------i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl  383 (609)
T KOG4227|consen  339 -----EMPSEIF------------------------------IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKL  383 (609)
T ss_pred             -----hCchhhe------------------------------ecceeEEEecccccccceeecCCcceEeccchhhheec
Confidence                 0000000                              00111278899999999999999999999999999999


Q ss_pred             C
Q psy8448         482 S  482 (482)
Q Consensus       482 W  482 (482)
                      |
T Consensus       384 W  384 (609)
T KOG4227|consen  384 W  384 (609)
T ss_pred             c
Confidence            9

>KOG1274|consensus

Probab=99.91  E-value=1.3e-22  Score=190.38  Aligned_cols=200  Identities=18%  Similarity=0.241  Sum_probs=166.0

Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc
Q psy8448         148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG-QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK  226 (482)
Q Consensus       148 ~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  226 (482)
                      .|...-+.++|.|+|+.|++|+.||.|++|+.... +....+ ..+...|.+++..  +.+|++|+.+++|.+|.+.+++
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            47788999999999999999999999999997665 333333 2266777777764  5589999999999999999988


Q ss_pred             eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         227 MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       227 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                      .-..+....-++.+++|+.+|++++.|+.|-.|++-++........++   +|+.+|.++.|+|++ .+|++.+.||.|+
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr---gh~apVl~l~~~p~~-~fLAvss~dG~v~  163 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR---GHDAPVLQLSYDPKG-NFLAVSSCDGKVQ  163 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec---ccCCceeeeeEcCCC-CEEEEEecCceEE
Confidence            766666677889999999999999999999999999999988888888   999999999999999 9999999999999


Q ss_pred             EEEcC-CcEEEEecCCcc-----cCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         307 IMNMQ-GQIVRSLSSGKR-----EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       307 i~d~~-~~~~~~~~~~~~-----~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      +|+++ +....++.....     ....+..++|+|+|..++..+.|+.|.+|+.
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r  217 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR  217 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc
Confidence            99994 444444432211     1344567999999999999999999995543

>KOG1273|consensus

Probab=99.91  E-value=2.1e-22  Score=166.48  Aligned_cols=263  Identities=15%  Similarity=0.229  Sum_probs=199.1

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .+|.+.+|+.....     ...++.+|..+|++++||+||+.|+|++.|..|.+||+..|...+.+.+.         ++
T Consensus        43 ~nG~vvI~D~~T~~-----iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~---------sp  108 (405)
T KOG1273|consen   43 ANGRVVIYDFDTFR-----IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---------SP  108 (405)
T ss_pred             cCCcEEEEEccccc-----hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc---------Cc
Confidence            38889999976554     33455699999999999999999999999999999999999988887765         78


Q ss_pred             EEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEeEEee-ccc----CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc
Q psy8448         153 VMSLAYSRDS-EMLASGSQSGKVKIWKIATGQCLRKLE-KAH----SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK  226 (482)
Q Consensus       153 i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~----~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  226 (482)
                      |+...|+|.. +..+++-.+..-.+.++..+.  ..+. ...    .....+..|.+.|++|++|...|.+.++|..+.+
T Consensus       109 v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e  186 (405)
T KOG1273|consen  109 VWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE  186 (405)
T ss_pred             cceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhe
Confidence            9999999943 344444445455566655432  2221 111    1123344688999999999999999999999999


Q ss_pred             eEEEeeccc-cceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-------c--eeeeeeccCCCccceeEEEEcCCCCCEE
Q psy8448         227 MLKEFRGHS-SFVNDITFTADGHSVLSASSDGTVKMWNLKTT-------E--CTSTFKSLGASDIAVNSIHLLPKNTEHF  296 (482)
Q Consensus       227 ~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~-------~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l  296 (482)
                      ++..++-.. ..|..+.++..|+.|+..+.|..|+.|+++.-       +  +...++.. ....+-.+++|+.+| .++
T Consensus       187 ~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~~Wk~ccfs~dg-eYv  264 (405)
T KOG1273|consen  187 CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKLQWKKCCFSGDG-EYV  264 (405)
T ss_pred             eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-HhhhhhhheeecCCc-cEE
Confidence            999888655 78999999999999999999999999998731       1  11222111 223456788999988 455


Q ss_pred             EE-EeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         297 VV-CNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       297 ~~-~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      ++ ......++||.. .|..++.+.+.+  ......+.|+|-...+++. ..|.++||....
T Consensus       265 ~a~s~~aHaLYIWE~~~GsLVKILhG~k--gE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  265 CAGSARAHALYIWEKSIGSLVKILHGTK--GEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             EeccccceeEEEEecCCcceeeeecCCc--hhheeecccccceeeeeec-cCCceEEEEeec
Confidence            44 445678999999 688888887764  3567889999998888877 789999996543

>KOG0302|consensus

Probab=99.91  E-value=1.2e-22  Score=171.94  Aligned_cols=207  Identities=21%  Similarity=0.324  Sum_probs=163.6

Q ss_pred             ecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCc
Q psy8448          96 KFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGK  173 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~  173 (482)
                      ..+|+..=+.++||| ....|++|..-+.|++|...++.-..     ....+.+|+..|..|+|+| ....|++|+.||+
T Consensus       207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             ecccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCce
Confidence            348999999999999 33358888888899999998876322     2234566999999999999 4568999999999


Q ss_pred             EEEEEcCCCe-EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC---CceEEEeeccccceeEEEEcCC-CC
Q psy8448         174 VKIWKIATGQ-CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS---GKMLKEFRGHSSFVNDITFTAD-GH  248 (482)
Q Consensus       174 i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~i~~l~~~~~-~~  248 (482)
                      |+|||++.+. ....+.+.|.+.|+.|.|+.+-.+|++|+.||+++|||+++   ++++..++-|..+|+++.|+|. ..
T Consensus       282 IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  282 IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             EEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence            9999999882 23333378999999999999888999999999999999986   4678899999999999999994 56


Q ss_pred             EEEEEeCCCcEEEEECCCCce--------eee-------eeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEE
Q psy8448         249 SVLSASSDGTVKMWNLKTTEC--------TST-------FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI  307 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~~--------~~~-------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i  307 (482)
                      .|++++.|..|.+||+....-        ...       +-........+..+.|+++-+.++++.+.||.-.+
T Consensus       362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf  435 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF  435 (440)
T ss_pred             eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence            788889999999999863211        111       11111234567889999999899999998885433

>KOG1009|consensus

Probab=99.90  E-value=5.7e-22  Score=169.45  Aligned_cols=171  Identities=23%  Similarity=0.365  Sum_probs=143.3

Q ss_pred             CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeec-cccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          98 GSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKD-LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      ....+|..+.|.++.. .||||+.|..|+||-++.+..-.. ........+..|...|+++.|+|+|..|++|+.+|.|.
T Consensus        11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            3457899999999766 999999999999999876553321 23334456777999999999999999999999999999


Q ss_pred             EEEcC--------C-----C--eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeE
Q psy8448         176 IWKIA--------T-----G--QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND  240 (482)
Q Consensus       176 iwd~~--------~-----~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  240 (482)
                      +|...        +     .  ........+|...|..++|+|++.++++++.|+.+++||+..|+....+..|...+..
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg  170 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG  170 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence            99765        2     1  1223333679999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy8448         241 ITFTADGHSVLSASSDGTVKMWNLKTTE  268 (482)
Q Consensus       241 l~~~~~~~~l~~~~~dg~i~i~d~~~~~  268 (482)
                      ++|.|-++++++-+.|...+.+.+...+
T Consensus       171 vawDpl~qyv~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  171 VAWDPLNQYVASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             eecchhhhhhhhhccCcccceeeeeeee
Confidence            9999999999999988877777765433

>KOG0307|consensus

Probab=99.90  E-value=4.1e-23  Score=198.35  Aligned_cols=252  Identities=16%  Similarity=0.270  Sum_probs=199.4

Q ss_pred             CCCCcEEEEEEcCCCCE----EEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCC
Q psy8448          98 GSKSHVECARFSPDGQY----LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSG  172 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg  172 (482)
                      .-....+.++|.+.|..    ||.|..||.|.+||...-  +.............|++.|..+.|++ .++.||+|+.||
T Consensus        62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g  139 (1049)
T KOG0307|consen   62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG  139 (1049)
T ss_pred             cccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence            34567899999997765    888899999999997652  11122223334455899999999999 455999999999


Q ss_pred             cEEEEEcCCCeEeEEe-ecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEeecccc--ceeEEEEcCCC-
Q psy8448         173 KVKIWKIATGQCLRKL-EKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEFRGHSS--FVNDITFTADG-  247 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~l~~~~~~-  247 (482)
                      .|.|||+...+..... .....+.|.+++|+..- ..|++++.+|.+.|||++..+.+-.+..+.+  .+..++|+|+. 
T Consensus       140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a  219 (1049)
T KOG0307|consen  140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA  219 (1049)
T ss_pred             cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence            9999999876554443 12345679999999854 4577888899999999999988877775554  47789999976 


Q ss_pred             CEEEEEeCC---CcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCc
Q psy8448         248 HSVLSASSD---GTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGK  322 (482)
Q Consensus       248 ~~l~~~~~d---g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~  322 (482)
                      ..+++++.|   -.|.+||+|... +.+.++   +|...|.++.|++.+..++++++.|+.|.+|+. +++.+..+... 
T Consensus       220 Tql~~As~dd~~PviqlWDlR~assP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-  295 (1049)
T KOG0307|consen  220 TQLLVASGDDSAPVIQLWDLRFASSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-  295 (1049)
T ss_pred             eeeeeecCCCCCceeEeecccccCCchhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-
Confidence            456666654   359999998753 344444   899999999999999899999999999999999 68888888764 


Q ss_pred             ccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEeehhh
Q psy8448         323 REGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~  357 (482)
                        ...+..+.|+|... .+++++-||.|-||.+...
T Consensus       296 --~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  296 --GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             --CcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence              67789999999876 7778999999999988643

>KOG1188|consensus

Probab=99.90  E-value=4.5e-22  Score=166.40  Aligned_cols=198  Identities=18%  Similarity=0.304  Sum_probs=154.0

Q ss_pred             CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      ..+|++...|.|++||..+++.+..+...        +..++.+.|..  ....+.+|+.||+|++||++.......+..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~--------~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP--------PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCC--------CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec
Confidence            56888888999999999998877776655        46677888876  466899999999999999998766544432


Q ss_pred             -ccC-CCeEEEEEccCCCEEEEEE----CCCeEEEEeCCCCce-EEEe-eccccceeEEEEcC-CCCEEEEEeCCCcEEE
Q psy8448         191 -AHS-LGVTCIQFSRDNSQILTAS----FDTYVRIHGLKSGKM-LKEF-RGHSSFVNDITFTA-DGHSVLSASSDGTVKM  261 (482)
Q Consensus       191 -~~~-~~v~~i~~~~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~-~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i  261 (482)
                       .+. .+..|++.+.++..+++|.    .+-.|.+||+|..+. +..+ ..|...|++++|+| +.+.|++|+.||.|.+
T Consensus       113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl  192 (376)
T KOG1188|consen  113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL  192 (376)
T ss_pred             cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe
Confidence             233 4678888877788888775    356899999998876 4444 57999999999999 5678999999999999


Q ss_pred             EECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448         262 WNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL  318 (482)
Q Consensus       262 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~  318 (482)
                      ||++....-..+...-.+...|..+.|..++.+.+.+-+...+..+|++ ++.....+
T Consensus       193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            9998654322222222667789999999988778999999999999999 45543333

>KOG0303|consensus

Probab=99.90  E-value=3.5e-22  Score=170.02  Aligned_cols=235  Identities=19%  Similarity=0.289  Sum_probs=186.5

Q ss_pred             cCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcE
Q psy8448          97 FGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKV  174 (482)
Q Consensus        97 ~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i  174 (482)
                      .||+++|..++|+| +...+|+|+.|.+|.||.+..+.+...+. ++...+.+|...|--++|+| ..+.|++++.|.+|
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-cceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            39999999999999 77889999999999999998877666554 55668889999999999999 55789999999999


Q ss_pred             EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccc-eeEEEEcCCCCEEEEE
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSF-VNDITFTADGHSVLSA  253 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~l~~~~~~~~l~~~  253 (482)
                      .+||+.+++.+..+.  |...|.++.|+.+|.+|++++.|..|+|||.++++.+.+-.+|.+. -..+-|-.++..+.+|
T Consensus       157 ~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            999999999988874  9999999999999999999999999999999999999988777663 4456677788844444


Q ss_pred             e---CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcE--EEEecCCcccCcCE
Q psy8448         254 S---SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI--VRSLSSGKREGGDF  328 (482)
Q Consensus       254 ~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~v  328 (482)
                      -   .+..+.+||..+.+....+..+ ...+.|.---|.++..-++++|-.|+.|+.|.++...  +..+..... ..+-
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S-~epQ  312 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS-KEPQ  312 (472)
T ss_pred             cccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc-CCcc
Confidence            3   4678999998876554444433 3345667777888885566677789999999996443  333332221 3344


Q ss_pred             EEEEEcCC
Q psy8448         329 LCCTTSPR  336 (482)
Q Consensus       329 ~~~~~~~~  336 (482)
                      ..+.|-|.
T Consensus       313 RG~g~mPK  320 (472)
T KOG0303|consen  313 RGMGFMPK  320 (472)
T ss_pred             cccccccc
Confidence            56667665

>KOG0270|consensus

Probab=99.90  E-value=1.3e-21  Score=169.21  Aligned_cols=239  Identities=15%  Similarity=0.265  Sum_probs=176.0

Q ss_pred             EEEEEEcCCCCEEEEEeCC---C--eEEEEecCCCceeeccccccccccccccccEEEEEEcC-------CCCEEEEEeC
Q psy8448         103 VECARFSPDGQYLITGSVD---G--FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-------DSEMLASGSQ  170 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-------~~~~l~~~~~  170 (482)
                      .-.+..-|+.++++++-.+   .  .|+||+-......    .+....+   .....|++|..       .|+++|.|+.
T Consensus       128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlY----vHHD~il---pafPLC~ewld~~~~~~~~gNyvAiGtm  200 (463)
T KOG0270|consen  128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLY----VHHDFIL---PAFPLCIEWLDHGSKSGGAGNYVAIGTM  200 (463)
T ss_pred             cccceeccCCcEEEEeeccCCceEEEEEEEcCCCccee----Eecceec---cCcchhhhhhhcCCCCCCCcceEEEecc
Confidence            3455667766677766432   2  3555553321111    1100000   23456666643       3689999999


Q ss_pred             CCcEEEEEcCCCeE---eEEe-----------------ecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         171 SGKVKIWKIATGQC---LRKL-----------------EKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       171 dg~i~iwd~~~~~~---~~~~-----------------~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      |..|.|||+.-...   ...+                 ..+|...|..++|+.. ...|++|+.|.+|++||+.++++..
T Consensus       201 dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~  280 (463)
T KOG0270|consen  201 DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS  280 (463)
T ss_pred             CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce
Confidence            99999999742110   0000                 1357778889999875 3578999999999999999999999


Q ss_pred             EeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCce-eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEE
Q psy8448         230 EFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTTEC-TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI  307 (482)
Q Consensus       230 ~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i  307 (482)
                      ++..|.+.|.++.|+| ....|++|+.|++|.+.|.|.... -..+    ...+.|-.++|.|.....+++++.||+++-
T Consensus       281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w----k~~g~VEkv~w~~~se~~f~~~tddG~v~~  356 (463)
T KOG0270|consen  281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW----KFDGEVEKVAWDPHSENSFFVSTDDGTVYY  356 (463)
T ss_pred             ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE----EeccceEEEEecCCCceeEEEecCCceEEe
Confidence            9999999999999999 457889999999999999995322 2233    335689999999999889999999999999


Q ss_pred             EEcC--CcEEEEecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEeeh
Q psy8448         308 MNMQ--GQIVRSLSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       308 ~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~~  355 (482)
                      +|++  ++++.++..|   ..+|.++++++.- .++++++.|+.+.+|++.
T Consensus       357 ~D~R~~~~~vwt~~AH---d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  357 FDIRNPGKPVWTLKAH---DDEISGLSVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             eecCCCCCceeEEEec---cCCcceEEecCCCCcceeeccccceEEEEeec
Confidence            9994  6788888776   7899999998764 568899999999977543

>KOG0650|consensus

Probab=99.90  E-value=7e-22  Score=176.86  Aligned_cols=253  Identities=21%  Similarity=0.289  Sum_probs=193.4

Q ss_pred             CceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC--EEE
Q psy8448         132 GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS--QIL  209 (482)
Q Consensus       132 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~  209 (482)
                      .+.+.-+.......+.+|++.|.+++..|.|.+|++|+.||+|+||.+.++.+++.+.  ..+.|.|++|+|.+.  .|+
T Consensus       382 p~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLA  459 (733)
T KOG0650|consen  382 PKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLA  459 (733)
T ss_pred             hhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEE
Confidence            3334445555556788999999999999999999999999999999999999999984  567899999999654  344


Q ss_pred             EEECCCeEEEEeCCCCc-------------------------------------eEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         210 TASFDTYVRIHGLKSGK-------------------------------------MLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       210 ~~~~dg~i~i~d~~~~~-------------------------------------~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      ++. +..+.|.+..-|.                                     -+...-.|...|..+.|+..|.+|++
T Consensus       460 vA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlat  538 (733)
T KOG0650|consen  460 VAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLAT  538 (733)
T ss_pred             EEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEE
Confidence            444 3335554432110                                     01122247788999999999999998


Q ss_pred             EeCC---CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCE
Q psy8448         253 ASSD---GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDF  328 (482)
Q Consensus       253 ~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v  328 (482)
                      ...+   ..|.|+++........|.   -..+.+.++.|+|.. .+|++++ ...|++||+ ....++.+..+   ...|
T Consensus       539 V~~~~~~~~VliHQLSK~~sQ~PF~---kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvKkL~tg---~kwi  610 (733)
T KOG0650|consen  539 VMPDSGNKSVLIHQLSKRKSQSPFR---KSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVKKLLTG---SKWI  610 (733)
T ss_pred             eccCCCcceEEEEecccccccCchh---hcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHHHHhcC---Ceee
Confidence            7653   469999998877666665   556788999999998 4555554 457999999 55555555554   5678


Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCC
Q psy8448         329 LCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKL  408 (482)
Q Consensus       329 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  408 (482)
                      ..++.+|.|..|+.|+.|+.+..+|++                +.+                                +.
T Consensus       611 S~msihp~GDnli~gs~d~k~~WfDld----------------lss--------------------------------kP  642 (733)
T KOG0650|consen  611 SSMSIHPNGDNLILGSYDKKMCWFDLD----------------LSS--------------------------------KP  642 (733)
T ss_pred             eeeeecCCCCeEEEecCCCeeEEEEcc----------------cCc--------------------------------ch
Confidence            899999999999999999999955543                111                                11


Q ss_pred             CchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         409 PEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                   .+          ++..|...|++++|++.-.++|||++||++.|+
T Consensus       643 -----------------------------yk----------~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  643 -----------------------------YK----------TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             -----------------------------hH----------HhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence                                         23          677899999999999999999999999999874

>KOG1007|consensus

Probab=99.89  E-value=3.2e-21  Score=157.68  Aligned_cols=224  Identities=18%  Similarity=0.319  Sum_probs=167.2

Q ss_pred             CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCC-------CcEEEEEcCCC---------
Q psy8448         120 VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQS-------GKVKIWKIATG---------  182 (482)
Q Consensus       120 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~d-------g~i~iwd~~~~---------  182 (482)
                      .|+.|.+.++.......     ....+..|.+.|..++-+| +.+.|+++..+       -.+.||.+...         
T Consensus        38 ~dNqVhll~~d~e~s~l-----~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl  112 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSEL-----LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL  112 (370)
T ss_pred             CcceeEEEEecCccchh-----hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh
Confidence            46778887776543211     1123334578999999999 45566666542       24779988643         


Q ss_pred             eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce-EEEee-----ccccceeEEEEcC--CCCEEEEEe
Q psy8448         183 QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM-LKEFR-----GHSSFVNDITFTA--DGHSVLSAS  254 (482)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~-----~~~~~i~~l~~~~--~~~~l~~~~  254 (482)
                      +++..+...+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+.     .+....++-+|+|  +++.+++. 
T Consensus       113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-  190 (370)
T KOG1007|consen  113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-  190 (370)
T ss_pred             hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-
Confidence            233444345556899999999998888876 88999999988765 33332     3456678889999  67766654 


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEE
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCT  332 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~  332 (482)
                      .|+++..||+++.++...+..  .|...|..+.|+|+...++++|+.||.|++||.+  ..++..+..|   ...+.++.
T Consensus       191 ~d~tl~~~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H---sHWvW~VR  265 (370)
T KOG1007|consen  191 SDSTLQFWDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH---SHWVWAVR  265 (370)
T ss_pred             CCCcEEEEEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC---ceEEEEEE
Confidence            578999999999887777765  7888999999999998899999999999999994  4556666554   78999999


Q ss_pred             EcCC-CCEEEEEeCCcEEEEEeeh
Q psy8448         333 TSPR-GEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       333 ~~~~-g~~l~~~~~dg~i~iw~~~  355 (482)
                      |+|. .++|++|+.|..+.+|...
T Consensus       266 fn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  266 FNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             ecCccceEEEecCCCceeEEEecc
Confidence            9997 4677799999999977543

>KOG2096|consensus

Probab=99.89  E-value=5.8e-21  Score=158.27  Aligned_cols=280  Identities=15%  Similarity=0.277  Sum_probs=196.8

Q ss_pred             hccCCCCCCceeeccCCc--cccccccccccccccc----eeeecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEecCC
Q psy8448          59 QHQGLLPPGTTIDLFRGK--AAMKDQEEEKYPTQLS----KQIKFGSKSHVECARFSPDGQYLITG-SVDGFIEVWNFTT  131 (482)
Q Consensus        59 ~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~v~iwd~~~  131 (482)
                      ...++..+|..++...++  +.+|+...  +..+..    ..+..+   .-+.+.|+||-+-++.. -...++++|.+.+
T Consensus        90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~D--F~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K  164 (420)
T KOG2096|consen   90 TDVAFSSDGKKLATISGDRSIRLWDVRD--FENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK  164 (420)
T ss_pred             eeeEEcCCCceeEEEeCCceEEEEecch--hhhhhhhHhhccccCC---CceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence            344566788887776554  55555433  322222    223334   46788999988766554 4556899998754


Q ss_pred             Cce---eec-cccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCE
Q psy8448         132 GKI---RKD-LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQ  207 (482)
Q Consensus       132 ~~~---~~~-~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  207 (482)
                      .+.   ... ...........|+-.+..+-...++.+|++++.|..|.+|+++ |+.+..+ ......-...+.+|+|++
T Consensus       165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i-dtnq~~n~~aavSP~GRF  242 (420)
T KOG2096|consen  165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI-DTNQSSNYDAAVSPDGRF  242 (420)
T ss_pred             cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee-ccccccccceeeCCCCcE
Confidence            331   111 1111111223356778888888889999999999999999998 8888887 455566778899999999


Q ss_pred             EEEEECCCeEEEEeCC---CC-----ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC----Cceeeeeec
Q psy8448         208 ILTASFDTYVRIHGLK---SG-----KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT----TECTSTFKS  275 (482)
Q Consensus       208 l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~  275 (482)
                      +++++.--.|++|.+-   .|     ..+..+++|...|..++|+++...+++.+.||++++||.+-    ++-...++.
T Consensus       243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~  322 (420)
T KOG2096|consen  243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE  322 (420)
T ss_pred             EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc
Confidence            9999999999999873   22     23557889999999999999999999999999999999753    221122211


Q ss_pred             ----cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         276 ----LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       276 ----~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                          +......-..+..+|.+ ..|++ +....+.+|.. +|+....+...  |...|.+++|+++|++++++++ ..++
T Consensus       323 g~~pl~aag~~p~RL~lsP~g-~~lA~-s~gs~l~~~~se~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcGd-r~vr  397 (420)
T KOG2096|consen  323 GSAPLHAAGSEPVRLELSPSG-DSLAV-SFGSDLKVFASEDGKDYPELEDI--HSTTISSISYSSDGKYIATCGD-RYVR  397 (420)
T ss_pred             CCcchhhcCCCceEEEeCCCC-cEEEe-ecCCceEEEEcccCccchhHHHh--hcCceeeEEecCCCcEEeeecc-eeee
Confidence                11223333489999998 55544 44567999988 67776666654  3789999999999999998875 4555

>KOG0307|consensus

Probab=99.89  E-value=5.4e-23  Score=197.57  Aligned_cols=283  Identities=15%  Similarity=0.276  Sum_probs=209.5

Q ss_pred             EEEEEcCCCC-EEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCE----EEEE
Q psy8448         104 ECARFSPDGQ-YLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM----LASG  168 (482)
Q Consensus       104 ~~~~~s~~~~-~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~----l~~~  168 (482)
                      ..++|+|.+. ++|+|.          .+.++-||.+........+.....   ..-....+.|+|.+.+..    |+.|
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s---~~s~~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGS---LQSSNRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccc---ccccccceeeeecccCCCccceeecc
Confidence            3468999876 556543          245566665543221111110000   001467899999997765    8888


Q ss_pred             eCCCcEEEEEcCC---C---eEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEee--cccccee
Q psy8448         169 SQSGKVKIWKIAT---G---QCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEFR--GHSSFVN  239 (482)
Q Consensus       169 ~~dg~i~iwd~~~---~---~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~  239 (482)
                      ..||.|.+||...   +   ..+.+. ..|.+.|..+.|++.. ..|++|+.||.|.|||+...+.-....  ...+.|.
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~  165 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK  165 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence            8999999999754   2   223344 6799999999999955 599999999999999998765544432  2456799


Q ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC---eEEEEEcC--Cc
Q psy8448         240 DITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN---TVVIMNMQ--GQ  313 (482)
Q Consensus       240 ~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~i~d~~--~~  313 (482)
                      +++|+.. .+.|++++.+|.+.|||++..+.+..+.... ....+..++|+|+....+++++.|.   .|.+||++  ..
T Consensus       166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass  244 (1049)
T KOG0307|consen  166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS  244 (1049)
T ss_pred             EeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence            9999974 4567888899999999999988777765332 2245889999999988888888764   69999984  55


Q ss_pred             EEEEecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccC
Q psy8448         314 IVRSLSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADIN  392 (482)
Q Consensus       314 ~~~~~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (482)
                      +++.+..|   ...|.++.|++.+ .+|++++.|+.+.                  +|+.++|                 
T Consensus       245 P~k~~~~H---~~GilslsWc~~D~~lllSsgkD~~ii------------------~wN~~tg-----------------  286 (1049)
T KOG0307|consen  245 PLKILEGH---QRGILSLSWCPQDPRLLLSSGKDNRII------------------CWNPNTG-----------------  286 (1049)
T ss_pred             chhhhccc---ccceeeeccCCCCchhhhcccCCCCee------------------EecCCCc-----------------
Confidence            66666544   7789999999987 8889999999999                  8999988                 


Q ss_pred             CCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcc-eEE
Q psy8448         393 NGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQN-LLG  471 (482)
Q Consensus       393 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~  471 (482)
                                    ++                             +.          .+....+.+..+.|+|... +++
T Consensus       287 --------------Ev-----------------------------l~----------~~p~~~nW~fdv~w~pr~P~~~A  313 (1049)
T KOG0307|consen  287 --------------EV-----------------------------LG----------ELPAQGNWCFDVQWCPRNPSVMA  313 (1049)
T ss_pred             --------------eE-----------------------------ee----------ecCCCCcceeeeeecCCCcchhh
Confidence                          33                             33          5556667789999999876 777


Q ss_pred             EEecCceeecC
Q psy8448         472 TYSEDGLLRFS  482 (482)
Q Consensus       472 s~~~Dg~i~iW  482 (482)
                      .++-||.|-|+
T Consensus       314 ~asfdgkI~I~  324 (1049)
T KOG0307|consen  314 AASFDGKISIY  324 (1049)
T ss_pred             hheeccceeee
Confidence            88899998774

>KOG0321|consensus

Probab=99.89  E-value=2.4e-21  Score=174.69  Aligned_cols=275  Identities=15%  Similarity=0.237  Sum_probs=189.3

Q ss_pred             cCCccccccccccccc-cccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYP-TQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      -+|.+.+.+.....+. ......-...|.+.|..+.|-|....|++++.|.++++||++.+++...      ..+.+|..
T Consensus        72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------~~~~GH~~  145 (720)
T KOG0321|consen   72 EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------RLNLGHTG  145 (720)
T ss_pred             CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------eeeccccc
Confidence            3455555554433333 1111122338999999999999777889999999999999998875432      24567899


Q ss_pred             cEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeE---------------------------eEEeecccCCCeEE---EE
Q psy8448         152 AVMSLAYSR-DSEMLASGSQSGKVKIWKIATGQC---------------------------LRKLEKAHSLGVTC---IQ  200 (482)
Q Consensus       152 ~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~v~~---i~  200 (482)
                      .|.+++|.| +...|++|+.||.|.|||++....                           +... ..+...|.+   +.
T Consensus       146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv  224 (720)
T KOG0321|consen  146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVV  224 (720)
T ss_pred             ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc-ccccCceeeeeEEE
Confidence            999999999 556889999999999999864320                           0000 123333444   55


Q ss_pred             EccCCCEEEEEEC-CCeEEEEeCCCCceEEE--------eecc---ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy8448         201 FSRDNSQILTASF-DTYVRIHGLKSGKMLKE--------FRGH---SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE  268 (482)
Q Consensus       201 ~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--------~~~~---~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~  268 (482)
                      +..|...|++++. |+.|+|||++.......        +..|   ...+.++..+..|.+|++.+.|+.|.+|++.+..
T Consensus       225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s  304 (720)
T KOG0321|consen  225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS  304 (720)
T ss_pred             EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence            5567888998887 99999999997654322        1223   3357888888889999999999999999998743


Q ss_pred             e--eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCC-CEEEEE
Q psy8448         269 C--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRG-EWIYCV  343 (482)
Q Consensus       269 ~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g-~~l~~~  343 (482)
                      .  +..+.........+ .-..+|++ ..+++|+.|...++|.+.  ......+.++   ...|++++|.|.. .-++++
T Consensus       305 ~sP~~~~sg~~~~sf~v-ks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh---t~eVt~V~w~pS~~t~v~Tc  379 (720)
T KOG0321|consen  305 ISPVAEFSGKLNSSFYV-KSELSPDD-CSLLSGSSDEQAYIWVVSSPEAPPALLLGH---TREVTTVRWLPSATTPVATC  379 (720)
T ss_pred             cCchhhccCcccceeee-eeecCCCC-ceEeccCCCcceeeeeecCccCChhhhhCc---ceEEEEEeeccccCCCceee
Confidence            2  22222110111112 23457888 899999999999999994  2333333333   7789999998753 346667


Q ss_pred             eCCcEEEEEeehhhhh
Q psy8448         344 GEDMVLVVRLIQQYLK  359 (482)
Q Consensus       344 ~~dg~i~iw~~~~~~~  359 (482)
                      ++|..++||++.....
T Consensus       380 SdD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  380 SDDFRVKIWRLSNGLE  395 (720)
T ss_pred             ccCcceEEEeccCchh
Confidence            9999999888754433

>KOG4328|consensus

Probab=99.89  E-value=2.5e-21  Score=167.96  Aligned_cols=267  Identities=16%  Similarity=0.175  Sum_probs=195.7

Q ss_pred             CCcccccccc--ccccccccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeecccccccccccccc
Q psy8448          74 RGKAAMKDQE--EEKYPTQLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME  150 (482)
Q Consensus        74 ~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~  150 (482)
                      .|++.+|+..  +++.+..   .....|..+|.++.|+| +...+++.+.||+|++-|++++.....+....      -.
T Consensus       209 ~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~------d~  279 (498)
T KOG4328|consen  209 GGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT------DN  279 (498)
T ss_pred             CCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCc------cc
Confidence            7889999985  3333332   23448999999999999 56788899999999999999876444443321      13


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCce--
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGKM--  227 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--  227 (482)
                      ..+..+.|+.+...++++..=|...+||++++........-|...|.+++++|- ..+|++++.|++.+|||++....  
T Consensus       280 ~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~  359 (498)
T KOG4328|consen  280 IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA  359 (498)
T ss_pred             eeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence            567888899888888888877899999999876533222568889999999994 56789999999999999986432  


Q ss_pred             --EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECC----CCceeeeeeccCCCc--cceeEEEEcCCCCCEEEEE
Q psy8448         228 --LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK----TTECTSTFKSLGASD--IAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       228 --~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~  299 (482)
                        ......|...|.+..|+|.+-.|++.+.|..|+|||..    ...+...+.....+.  -......|.|+. .++++|
T Consensus       360 sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~-~li~vg  438 (498)
T KOG4328|consen  360 SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY-NLIVVG  438 (498)
T ss_pred             CcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc-cEEEEe
Confidence              23334699999999999988889999999999999983    333344443211111  123456899987 899999


Q ss_pred             eCCCeEEEEEcCCcE-EEEecCCcccCcCEEE-EEEcCCCC-EEEEEeCCcEEEEE
Q psy8448         300 NKTNTVVIMNMQGQI-VRSLSSGKREGGDFLC-CTTSPRGE-WIYCVGEDMVLVVR  352 (482)
Q Consensus       300 ~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~-~~~~~~g~-~l~~~~~dg~i~iw  352 (482)
                      ..-..|-++|-+++. +..+....  ...|.+ ..|+|-+. +++.++..|.|+||
T Consensus       439 ~~~r~IDv~~~~~~q~v~el~~P~--~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  439 RYPRPIDVFDGNGGQMVCELHDPE--SSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             ccCcceeEEcCCCCEEeeeccCcc--ccccccceeecccccceeccCCccceEEEE
Confidence            999999999996554 55544332  223443 58999988 44455567888855

>KOG1587|consensus

Probab=99.88  E-value=8.2e-21  Score=177.61  Aligned_cols=270  Identities=16%  Similarity=0.178  Sum_probs=197.0

Q ss_pred             ccccccccccccccccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE
Q psy8448          76 KAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM  154 (482)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~  154 (482)
                      ...+|+......|....     .-...|+|++|+| +..+||.|+.+|.|.+||++.+.....  .........|..+++
T Consensus       223 ~~~vW~~~~p~~Pe~~~-----~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~--s~ls~~~~sh~~~v~  295 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVL-----ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP--SGLSALEVSHSEPVT  295 (555)
T ss_pred             eEEEEecCCCCCceEEE-----ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC--cccccccccCCcCeE
Confidence            57778877664444333     4578999999999 778888999999999999998775221  111122344789999


Q ss_pred             EEEEcCCC--CEEEEEeCCCcEEEEEcCCCeEeE------Ee-----ecccCCCeEEEEEcc-CCCEEEEEECCCeEEEE
Q psy8448         155 SLAYSRDS--EMLASGSQSGKVKIWKIATGQCLR------KL-----EKAHSLGVTCIQFSR-DNSQILTASFDTYVRIH  220 (482)
Q Consensus       155 ~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~------~~-----~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~  220 (482)
                      .+.|..+.  .-+++++.||.|..|+++.-....      ..     .......+++++|.+ +...+++|+.+|.|.--
T Consensus       296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~  375 (555)
T KOG1587|consen  296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG  375 (555)
T ss_pred             EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence            99998744  449999999999999876432211      00     012234689999988 55679999999998874


Q ss_pred             eCCCCc--------eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeeeeccCCCccceeEEEEcCC
Q psy8448         221 GLKSGK--------MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK-TTECTSTFKSLGASDIAVNSIHLLPK  291 (482)
Q Consensus       221 d~~~~~--------~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~i~~~~~  291 (482)
                      +-...+        ....+..|.++|.++.++|-+..++..+.|.+++||... ...++..+.   .+...+++++|+|.
T Consensus       376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPT  452 (555)
T ss_pred             eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcCc
Confidence            433222        133455688999999999977766666669999999987 555555554   55666999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         292 NTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       292 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      .+.+|+++..+|.+.+||+....................+.|+++|+.|++|...|.+.+|++.
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            9899999999999999999433222222222225566788999999999999999999977664

>KOG1538|consensus

Probab=99.88  E-value=6.7e-21  Score=172.80  Aligned_cols=267  Identities=17%  Similarity=0.281  Sum_probs=201.5

Q ss_pred             cCCCCCCceeeccCC-ccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccc
Q psy8448          61 QGLLPPGTTIDLFRG-KAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK  139 (482)
Q Consensus        61 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  139 (482)
                      .++-|+|+.+.+..| ...+++......     -+.+.+|++.|+|++|+.||+.+|+|+.|+.|.+|+-.-   ...+.
T Consensus        18 ~afkPDGsqL~lAAg~rlliyD~ndG~l-----lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk   89 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAAGSRLLVYDTSDGTL-----LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK   89 (1081)
T ss_pred             eEECCCCceEEEecCCEEEEEeCCCccc-----ccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence            345566665444333 344444433322     233459999999999999999999999999999997542   22223


Q ss_pred             cccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448         140 YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI  219 (482)
Q Consensus       140 ~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i  219 (482)
                      ..       |.+.|.||.|+|-...|++|+-. ..-+|.........   ......+.+++|..||++++.|-.+|+|.+
T Consensus        90 YS-------H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsi  158 (1081)
T KOG1538|consen   90 YS-------HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISI  158 (1081)
T ss_pred             ec-------cCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEe
Confidence            33       68899999999998899999865 56788865443322   224567899999999999999999999999


Q ss_pred             EeCCCCceEEEee---ccccceeEEEEcCCC-----CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC
Q psy8448         220 HGLKSGKMLKEFR---GHSSFVNDITFTADG-----HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK  291 (482)
Q Consensus       220 ~d~~~~~~~~~~~---~~~~~i~~l~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~  291 (482)
                      -+- ++++...+.   +...+|.+++|+|..     ..+++..-..++.+|.+. |+.+..-+   .-+....|+.+.++
T Consensus       159 RNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r---~L~FdP~CisYf~N  233 (1081)
T KOG1538|consen  159 RNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR---ALNFDPCCISYFTN  233 (1081)
T ss_pred             ecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc---cCCCCchhheeccC
Confidence            874 455444443   467899999999953     467788888888888876 33333322   33445678999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         292 NTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       292 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      | ++++.|+.|+.+.+|..+|-.+-++...   ...|+.++..|+++.++.|+.||+|.-|.+-
T Consensus       234 G-Ey~LiGGsdk~L~~fTR~GvrLGTvg~~---D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  234 G-EYILLGGSDKQLSLFTRDGVRLGTVGEQ---DSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             C-cEEEEccCCCceEEEeecCeEEeecccc---ceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            9 8999999999999999988888887764   7889999999999999999999999977653

>KOG1963|consensus

Probab=99.87  E-value=1e-19  Score=170.60  Aligned_cols=257  Identities=15%  Similarity=0.228  Sum_probs=185.4

Q ss_pred             ccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCC--CceeeccccccccccccccccEEEEEEcCCCCEE
Q psy8448          88 PTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT--GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML  165 (482)
Q Consensus        88 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  165 (482)
                      .....+.+...|...++|.++||+++++|+|..||.|.+|.--.  +...      ....+.-|.+.|++++|+++|.+|
T Consensus       193 ~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~------t~t~lHWH~~~V~~L~fS~~G~~L  266 (792)
T KOG1963|consen  193 KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE------TCTLLHWHHDEVNSLSFSSDGAYL  266 (792)
T ss_pred             eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc------cceEEEecccccceeEEecCCceE
Confidence            33444445557888899999999999999999999999997433  1111      112233367899999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec-----------c
Q psy8448         166 ASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG-----------H  234 (482)
Q Consensus       166 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~  234 (482)
                      ++|+..|.+.+|.+.+++  +++..--.++|..+.++||+.+.+....|+.|.+....+.+...++.+           .
T Consensus       267 lSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~  344 (792)
T KOG1963|consen  267 LSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRP  344 (792)
T ss_pred             eecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccc
Confidence            999999999999999988  555456678999999999999999999999999998866654444332           2


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC--------CCccceeEEEEcCCCCCEEEEEe------
Q psy8448         235 SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG--------ASDIAVNSIHLLPKNTEHFVVCN------  300 (482)
Q Consensus       235 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~v~~i~~~~~~~~~l~~~~------  300 (482)
                      .+-.+.++++|..+.++-.+..|.|.+||+-+.+.+..+....        .+...++.++.+..| .++++.-      
T Consensus       345 ~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g-s~maT~E~~~d~~  423 (792)
T KOG1963|consen  345 QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG-SWMATLEARIDKF  423 (792)
T ss_pred             cccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc-eEEEEeeeeehhh
Confidence            4456788999977778888999999999999887766654321        123456677777776 6777653      


Q ss_pred             --CC--CeEEEEEcCCc-----EEEEecCCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEee
Q psy8448         301 --KT--NTVVIMNMQGQ-----IVRSLSSGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLI  354 (482)
Q Consensus       301 --~d--~~i~i~d~~~~-----~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~  354 (482)
                        .|  -.+++|-..+.     ....+...+. ...+..+..++... ..++++.||.++||.+
T Consensus       424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~-~~~vat~~~~~~rs~~~vta~~dg~~KiW~~  486 (792)
T KOG1963|consen  424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHG-NAFVATIFLNPTRSVRCVTASVDGDFKIWVF  486 (792)
T ss_pred             hccCceEEEEEEEEcCCcceeEEEEEEecCCC-ceeEEEEEecCcccceeEEeccCCeEEEEEE
Confidence              22  35788987422     2233333332 22233333444433 8899999999998754

>KOG1240|consensus

Probab=99.87  E-value=8.2e-20  Score=176.55  Aligned_cols=259  Identities=15%  Similarity=0.168  Sum_probs=180.9

Q ss_pred             eeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          94 QIKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      .-+..|...|..++.++. +.++++|+.||+|++||..+-.... ........+..-...+.++...+.++.+|+++.||
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence            334589999999998875 4999999999999999987533210 00111111111257899999999999999999999


Q ss_pred             cEEEEEcCCCe-------EeEEeecccCCC-eEEEEEcc-CCC-EEEEEECCCeEEEEeCCCCceEEEee--ccccceeE
Q psy8448         173 KVKIWKIATGQ-------CLRKLEKAHSLG-VTCIQFSR-DNS-QILTASFDTYVRIHGLKSGKMLKEFR--GHSSFVND  240 (482)
Q Consensus       173 ~i~iwd~~~~~-------~~~~~~~~~~~~-v~~i~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~  240 (482)
                      .|.+.++....       ..+.......+. +..-+|.. .+. .++.+...+.|..||++.......++  ...+.|++
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence            99999987521       111111112223 33334443 334 68888889999999999876655443  34678999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC--CEEEE-Ee-CCCeEEEEEc-CCcEE
Q psy8448         241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT--EHFVV-CN-KTNTVVIMNM-QGQIV  315 (482)
Q Consensus       241 l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~~-~~-~d~~i~i~d~-~~~~~  315 (482)
                      ++.+|.++++++|+..|.+.+||++-+.++..+..  ++..+++.+..+|-.+  ...++ ++ ..+.|.+|++ .|...
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence            99999999999999999999999999998888865  4557888888887654  34444 44 5788999999 45444


Q ss_pred             EEecCC-c---------------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         316 RSLSSG-K---------------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       316 ~~~~~~-~---------------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ..+... .               .+......+++...+.++.+|+.|..|+.||..
T Consensus      1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            443322 0               111223345555567799999999999977654

>KOG4378|consensus

Probab=99.87  E-value=7.5e-21  Score=166.63  Aligned_cols=220  Identities=15%  Similarity=0.241  Sum_probs=180.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT  181 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~  181 (482)
                      .-.|++......++++|+..+.|+|||++...+.        ..+.+|++.|+++.++-...|||+++..|.|.|..+.+
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h--------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t  152 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH--------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT  152 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh--------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence            4455555555689999999999999999843332        23445789999999999999999999999999999999


Q ss_pred             CeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCCceEEEe-eccccceeEEEEcCCC-CEEEEEeCCCc
Q psy8448         182 GQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKMLKEF-RGHSSFVNDITFTADG-HSVLSASSDGT  258 (482)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~l~~~~~~-~~l~~~~~dg~  258 (482)
                      +.....+..+....|+-+.|+|..+ +|.+++.+|.|.+||+....++..+ ..|..+...++|+|.. .+|++.+.|..
T Consensus       153 ~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk  232 (673)
T KOG4378|consen  153 KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK  232 (673)
T ss_pred             CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce
Confidence            9888888655566788999999665 4568899999999999877776554 5799999999999954 56788999999


Q ss_pred             EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCC
Q psy8448         259 VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPR  336 (482)
Q Consensus       259 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~  336 (482)
                      |.+||.+.......+    ....+...++|.++| .+|++|+..|.|..||++  ..++..+..+   ...|++++|-|.
T Consensus       233 i~~yD~~s~~s~~~l----~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah---~~sVt~vafq~s  304 (673)
T KOG4378|consen  233 INIYDIRSQASTDRL----TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTKAPVAVRSAH---DASVTRVAFQPS  304 (673)
T ss_pred             EEEeeccccccccee----eecCCcceeeecCCc-eEEEeecCCceEEEEecccCCCCceEeeec---ccceeEEEeeec
Confidence            999999987776666    446789999999999 899999999999999995  4456666555   667999999776


Q ss_pred             C
Q psy8448         337 G  337 (482)
Q Consensus       337 g  337 (482)
                      .
T Consensus       305 ~  305 (673)
T KOG4378|consen  305 P  305 (673)
T ss_pred             c
Confidence            4

>KOG1007|consensus

Probab=99.86  E-value=1.7e-20  Score=153.48  Aligned_cols=230  Identities=19%  Similarity=0.297  Sum_probs=178.3

Q ss_pred             cccccccccccc-----cccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCce-eecccccccccccccc
Q psy8448          77 AAMKDQEEEKYP-----TQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKI-RKDLKYQAQDNFMLME  150 (482)
Q Consensus        77 ~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~h~  150 (482)
                      ..+|...++.-+     ......+-..+-+.|.|+.|.|++..|++-. |..|.+|++..+.. ...+.....   .+|+
T Consensus        95 aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s---~e~~  170 (370)
T KOG1007|consen   95 AAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES---AEMR  170 (370)
T ss_pred             EEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccc---cccc
Confidence            456666554433     3344444445667999999999999998876 78899999998765 333332222   2256


Q ss_pred             ccEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCC-c
Q psy8448         151 EAVMSLAYSR--DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSG-K  226 (482)
Q Consensus       151 ~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~-~  226 (482)
                      ...++-+|+|  +++.+++. .|+++..||+++......+...|...|..+.|+|+-+ +|++|+.||.|++||.+.. .
T Consensus       171 ~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~  249 (370)
T KOG1007|consen  171 HSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF  249 (370)
T ss_pred             ceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc
Confidence            7789999999  77777765 5789999999999988888889999999999999765 5788999999999999865 4


Q ss_pred             eEEEeeccccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCc---------------------ee-----eeeeccCCC
Q psy8448         227 MLKEFRGHSSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTE---------------------CT-----STFKSLGAS  279 (482)
Q Consensus       227 ~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~---------------------~~-----~~~~~~~~~  279 (482)
                      +++++.+|...|.++.|+|. .+++++|+.|..|.+|...+-.                     ..     ..+.....|
T Consensus       250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh  329 (370)
T KOG1007|consen  250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH  329 (370)
T ss_pred             cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence            78899999999999999994 5678899999999999753211                     00     011223378


Q ss_pred             ccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         280 DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       280 ~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      +..|.+++|+...+-+|++-+.||.+.|-.+.
T Consensus       330 EDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  330 EDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            89999999999998899999999999887653

>KOG2110|consensus

Probab=99.86  E-value=1.1e-18  Score=147.90  Aligned_cols=238  Identities=13%  Similarity=0.221  Sum_probs=188.5

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC--CcEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS--GKVKI  176 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d--g~i~i  176 (482)
                      ....+..+.|+.+...|..|+.|| .++|+.+...........        ...|.-+-|+  ..++|..+.+  +.+++
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~--------~~~IvEmLFS--SSLvaiV~~~qpr~Lkv   72 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTE--------GVSIVEMLFS--SSLVAIVSIKQPRKLKV   72 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCC--------CeEEEEeecc--cceeEEEecCCCceEEE
Confidence            345677888999999999999998 788887654431111111        2356666776  4466666654  45999


Q ss_pred             EEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec---cccceeEEEEcCCCCEEEEE
Q psy8448         177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG---HSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~~  253 (482)
                      ++++.+..+..+.  ...+|.++.++.  +.|+++-.+ .|+|||+++.+.+.++..   +...+.++.+++.+.+++.-
T Consensus        73 ~~~Kk~~~ICe~~--fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp  147 (391)
T KOG2110|consen   73 VHFKKKTTICEIF--FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP  147 (391)
T ss_pred             EEcccCceEEEEe--cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEec
Confidence            9999888888874  566799999964  467776644 499999999999887753   45557777777777788753


Q ss_pred             --eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCe-EEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448         254 --SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT-VVIMNM-QGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       254 --~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-i~i~d~-~~~~~~~~~~~~~~~~~v~  329 (482)
                        ...|.|.+||..+.+.+..+.   .|++++.+++|+++| .++++++..|+ ||++.+ +|+.+..+..+.. ...|.
T Consensus       148 ~s~t~GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~Iy  222 (391)
T KOG2110|consen  148 GSTTSGDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIY  222 (391)
T ss_pred             CCCCCceEEEEEcccceeeeEEE---ecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEE
Confidence              346899999999999999988   999999999999999 89999999987 689999 7999999998766 67889


Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEEeehhh
Q psy8448         330 CCTTSPRGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                      +++|+|++++|++.++.++|.|+.+++.
T Consensus       223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9999999999999999999998877643

>KOG0290|consensus

Probab=99.86  E-value=3.1e-19  Score=146.28  Aligned_cols=246  Identities=20%  Similarity=0.291  Sum_probs=184.6

Q ss_pred             CCCCcEEEEEEcC---CCCEEEEEe----CCCeEEEEecC--CCceeeccccccccccccccccEEEEEEcCCC-----C
Q psy8448          98 GSKSHVECARFSP---DGQYLITGS----VDGFIEVWNFT--TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS-----E  163 (482)
Q Consensus        98 ~h~~~v~~~~~s~---~~~~l~s~~----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-----~  163 (482)
                      ...-++.++.|+.   .+.+||.|+    ..+.|.|-.+.  +++....-.       ..|.-+++.+.|.|+.     +
T Consensus        42 ~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g~~pd  114 (364)
T KOG0290|consen   42 NAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-------FDHPYPVTKLMWIPDSKGVYPD  114 (364)
T ss_pred             cCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-------CCCCCCccceEecCCccccCcc
Confidence            3445788899984   345788887    34566666554  344333322       3367899999999976     3


Q ss_pred             EEEEEeCCCcEEEEEcCCCeEeE----Ee----ecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCce---EEEe
Q psy8448         164 MLASGSQSGKVKIWKIATGQCLR----KL----EKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKM---LKEF  231 (482)
Q Consensus       164 ~l~~~~~dg~i~iwd~~~~~~~~----~~----~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~  231 (482)
                      +||+++ | .+++|.+...+...    .+    ...+..++++..|+. +.++|.+++-|-+..|||++++..   ...+
T Consensus       115 lLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  115 LLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             hhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence            455543 3 89999986322111    11    134667899999998 678899999999999999998743   5567


Q ss_pred             eccccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-CeEEEEE
Q psy8448         232 RGHSSFVNDITFTADG-HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-NTVVIMN  309 (482)
Q Consensus       232 ~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~i~d  309 (482)
                      -.|...|..++|...+ +.+++.+.||.+++||++..+.-..+........+...++|+++..+++++-..| ..|.+.|
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            7899999999999854 5788999999999999998876555543334467889999999998888886655 5789999


Q ss_pred             cC--CcEEEEecCCcccCcCEEEEEEcCC-CCEEEEEeCCcEEEEEeeh
Q psy8448         310 MQ--GQIVRSLSSGKREGGDFLCCTTSPR-GEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       310 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~-g~~l~~~~~dg~i~iw~~~  355 (482)
                      ++  ..++..+..|   ...|..++|.|. ...|.++++|..+.|||+.
T Consensus       273 iR~P~tpva~L~~H---~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  273 IRVPCTPVARLRNH---QASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             ecCCCcceehhhcC---cccccceEecCCCCceeeecCCcceEEEEecc
Confidence            94  6777777776   789999999997 5688899999999977765

>KOG0649|consensus

Probab=99.86  E-value=2.7e-19  Score=143.00  Aligned_cols=245  Identities=14%  Similarity=0.255  Sum_probs=177.8

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCcee----e--ccccccccccccccccEEEEEEcCCCC
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIR----K--DLKYQAQDNFMLMEEAVMSLAYSRDSE  163 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~----~--~~~~~~~~~~~~h~~~i~~l~~~~~~~  163 (482)
                      +.......+|.++|+.++|.  ..+|++|+ ||.|+=|..+.....    .  ....+.+.. ..---.|++|...|..+
T Consensus        52 k~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~-~~evPeINam~ldP~en  127 (325)
T KOG0649|consen   52 KLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVD-AVEVPEINAMWLDPSEN  127 (325)
T ss_pred             CcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccC-cccCCccceeEeccCCC
Confidence            33333336999999999998  44777776 699999987643220    0  011110000 00023689999999888


Q ss_pred             EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc---------
Q psy8448         164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH---------  234 (482)
Q Consensus       164 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------  234 (482)
                      -+++++.|+.++-||+++|+..+.+ ++|...+.+++--.....+++|++||++++||.++++++..+...         
T Consensus       128 Si~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~  206 (325)
T KOG0649|consen  128 SILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD  206 (325)
T ss_pred             cEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcc
Confidence            7888889999999999999999999 799999999998666667999999999999999999998876432         


Q ss_pred             -ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q psy8448         235 -SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ  313 (482)
Q Consensus       235 -~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~  313 (482)
                       ...|-+++.  +..++++|+ ...+.+|.+++.++...+.    -..++..+.|..   +.+++++..+.+.-|.+.|.
T Consensus       207 ~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp----ipa~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  207 WGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP----IPARVHLVDFVD---DCVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             cCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe----cccceeEeeeec---ceEEEeccccceeeeeeccE
Confidence             223555554  456777765 4579999999999988884    456788888876   57888888999999999887


Q ss_pred             EEEEecCCcccCcCEEEEEEcCC-CCEEEEEeCCcEEEEE
Q psy8448         314 IVRSLSSGKREGGDFLCCTTSPR-GEWIYCVGEDMVLVVR  352 (482)
Q Consensus       314 ~~~~~~~~~~~~~~v~~~~~~~~-g~~l~~~~~dg~i~iw  352 (482)
                      ........   ....++..|+.. -++|-.++..+.+.|+
T Consensus       277 l~a~ip~~---s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  277 LQANIPVE---STACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             EEEeccCC---ccceeeecccCCceEEEEecccceeeeee
Confidence            76666544   233444555433 3455567777777754

>KOG2919|consensus

Probab=99.86  E-value=1.1e-19  Score=151.00  Aligned_cols=241  Identities=17%  Similarity=0.270  Sum_probs=182.5

Q ss_pred             eecCCCCcEEEEEEc-------CCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc---cEEEEEEcCCCCE
Q psy8448          95 IKFGSKSHVECARFS-------PDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE---AVMSLAYSRDSEM  164 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s-------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~---~i~~l~~~~~~~~  164 (482)
                      +.......|...+|-       |+..++|+.+.+.-|++||.-+|+....+..-.      |.+   ...+++|+|||.+
T Consensus        99 ~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~yd------h~de~taAhsL~Fs~DGeq  172 (406)
T KOG2919|consen   99 YRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYD------HQDEYTAAHSLQFSPDGEQ  172 (406)
T ss_pred             EEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhh------hHHhhhhheeEEecCCCCe
Confidence            334445678888875       677899999999999999999999876655432      222   4568999999999


Q ss_pred             EEEEeCCCcEEEEEc-CCCeEe---EEee---cccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCceEEEeecccc
Q psy8448         165 LASGSQSGKVKIWKI-ATGQCL---RKLE---KAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGKMLKEFRGHSS  236 (482)
Q Consensus       165 l~~~~~dg~i~iwd~-~~~~~~---~~~~---~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  236 (482)
                      |++|. ...|+++|+ +.|..-   .++.   .+..+-+.|++|+|. .+.+++|+....+-||.-..+.++..+-+|.+
T Consensus       173 lfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g  251 (406)
T KOG2919|consen  173 LFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG  251 (406)
T ss_pred             Eeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC
Confidence            98875 569999998 444321   1111   233567899999994 55899999999999999889999999999999


Q ss_pred             ceeEEEEcCCCCEEEEEeC-CCcEEEEECCCC-ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--C
Q psy8448         237 FVNDITFTADGHSVLSASS-DGTVKMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--G  312 (482)
Q Consensus       237 ~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~  312 (482)
                      .|+.++|.++|+.|++|+. +-.|..||++.- .++..+.........-.-....|.+ ++|++|+.||.|++||+.  +
T Consensus       252 GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  252 GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             CeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCC
Confidence            9999999999999999885 678999999874 3344443222212222235567777 899999999999999994  5


Q ss_pred             cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         313 QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       313 ~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      ..+..+..+   ...+..++++|--..+++++..
T Consensus       331 n~~sv~~~~---sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  331 NEVSVTGNY---SDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             Ccccccccc---cccccceecCcccceeeeccCc
Confidence            655555443   6778899999998888877654

>KOG1517|consensus

Probab=99.86  E-value=6.1e-20  Score=174.80  Aligned_cols=247  Identities=13%  Similarity=0.253  Sum_probs=180.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeCCCcEEEE
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQSGKVKIW  177 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~dg~i~iw  177 (482)
                      ..+-..+.|+|=...++++...-.|+|||.+.++....+......     ...|+.+.+-.  |..++++|+.||.|+||
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-----~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP-----DTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC-----CCccceeeeecccchhheeeeccCceEEEe
Confidence            335667788998888998887778999999999987766554322     46799998876  56689999999999999


Q ss_pred             EcCCC-----eEeEEee------cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee-ccccceeEEEEcC
Q psy8448         178 KIATG-----QCLRKLE------KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-GHSSFVNDITFTA  245 (482)
Q Consensus       178 d~~~~-----~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~l~~~~  245 (482)
                      +-...     +.+..+.      .+..+.-.-+.|.....+|++++.-..|+|||....+.+..+. +....|+++.-+.
T Consensus      1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred             cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc
Confidence            74221     2222211      1111112446787776778777778899999998887777665 3445677776554


Q ss_pred             -CCCEEEEEeCCCcEEEEECCCCce---eeeeeccCCCccc--eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEec
Q psy8448         246 -DGHSVLSASSDGTVKMWNLKTTEC---TSTFKSLGASDIA--VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS  319 (482)
Q Consensus       246 -~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~--v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  319 (482)
                       .|+.+++|..||.|++||.+....   +...+   .|...  |..+.+.+.|-..+++|+.+|.|++||++......+.
T Consensus      1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR---EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred             cCCceEEEeecCCceEEeecccCCccccceeec---ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence             469999999999999999987544   33344   55555  9999999988778999999999999999763322222


Q ss_pred             ---CCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         320 ---SGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       320 ---~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                         .+....+..+++..+++...+|+|+. +.|.||+..
T Consensus      1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred             eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence               22111335899999999999999999 999976553

>KOG1009|consensus

Probab=99.86  E-value=6.1e-20  Score=157.15  Aligned_cols=276  Identities=18%  Similarity=0.225  Sum_probs=191.6

Q ss_pred             CCcccccccccccccc----ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCcee------e--ccccc
Q psy8448          74 RGKAAMKDQEEEKYPT----QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIR------K--DLKYQ  141 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~------~--~~~~~  141 (482)
                      +.++.+|.........    -.....+..|...|+++.|+|+|+.||+|+.+|.|.+|....-...      .  .-...
T Consensus        35 D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~  114 (434)
T KOG1009|consen   35 DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWV  114 (434)
T ss_pred             ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceE
Confidence            6667778765443322    2333556699999999999999999999999999999986631110      0  00122


Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG  221 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d  221 (482)
                      -...+.+|...|..++|+|+++++++++.|..+++||+..|.....+ ..|...+..++|.|-++++++-+.|...+.+.
T Consensus       115 v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~  193 (434)
T KOG1009|consen  115 VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS  193 (434)
T ss_pred             EEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec-cccccccceeecchhhhhhhhhccCcccceee
Confidence            23456678999999999999999999999999999999999998888 78999999999999999999988888777766


Q ss_pred             CCCCceEEEee-------------------cc----ccceeEEEEcCCCCEEEEEeC----CCc-----EEEEECCCC-c
Q psy8448         222 LKSGKMLKEFR-------------------GH----SSFVNDITFTADGHSVLSASS----DGT-----VKMWNLKTT-E  268 (482)
Q Consensus       222 ~~~~~~~~~~~-------------------~~----~~~i~~l~~~~~~~~l~~~~~----dg~-----i~i~d~~~~-~  268 (482)
                      +...+.+....                   -|    ......++|+|+|.++++.+.    .+.     .++|+-... +
T Consensus       194 ~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r  273 (434)
T KOG1009|consen  194 AKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR  273 (434)
T ss_pred             eeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC
Confidence            54332221110                   01    122456789999999887542    222     344443321 2


Q ss_pred             eeeeeeccCCCccceeEEEEcCCC----------------CCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEE
Q psy8448         269 CTSTFKSLGASDIAVNSIHLLPKN----------------TEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCC  331 (482)
Q Consensus       269 ~~~~~~~~~~~~~~v~~i~~~~~~----------------~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~  331 (482)
                      +...+.   ....+...+.++|--                .+++++....+.+++||. .-.++......  |-..++.+
T Consensus       274 P~~~lp---~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni--hy~~iTDi  348 (434)
T KOG1009|consen  274 PAARLP---SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI--HYSAITDI  348 (434)
T ss_pred             ceeecC---CCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeee--eeeeecce
Confidence            222222   334455555555410                123444445568999998 44555555544  37789999


Q ss_pred             EEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         332 TTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       332 ~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +|++||..|+..+.||..-+-.++
T Consensus       349 aws~dg~~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  349 AWSDDGSVLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             eecCCCcEEEEeccCCceEEEEEc
Confidence            999999999999999988755444

>KOG1034|consensus

Probab=99.86  E-value=3e-20  Score=154.71  Aligned_cols=245  Identities=17%  Similarity=0.284  Sum_probs=182.6

Q ss_pred             CCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC-CCEEEEEeCCC
Q psy8448          98 GSKSHVECARFSPD----GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQSG  172 (482)
Q Consensus        98 ~h~~~v~~~~~s~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg  172 (482)
                      .|......++|+-+    ..+||.|+.-|.|+|.|+.+++....+        .+|...|+.+.++|+ .+++++++.|.
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~--------~ghG~sINeik~~p~~~qlvls~SkD~  158 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY--------RGHGGSINEIKFHPDRPQLVLSASKDH  158 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce--------eccCccchhhhcCCCCCcEEEEecCCc
Confidence            47788888888753    458899999999999999987765444        446789999999995 47899999999


Q ss_pred             cEEEEEcCCCeEeEEee--cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE---------------------
Q psy8448         173 KVKIWKIATGQCLRKLE--KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK---------------------  229 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---------------------  229 (482)
                      .|++|++++..++..+-  .+|...|.++.|+++|.+|++++.|..|++|++...+...                     
T Consensus       159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~  238 (385)
T KOG1034|consen  159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK  238 (385)
T ss_pred             eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence            99999999999988773  4689999999999999999999999999999997322100                     


Q ss_pred             -------EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcee----------eeeeccCCCccceeEE--EEc
Q psy8448         230 -------EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK-TTECT----------STFKSLGASDIAVNSI--HLL  289 (482)
Q Consensus       230 -------~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~----------~~~~~~~~~~~~v~~i--~~~  289 (482)
                             +-.-|...|.|+.|-  |+++++-+-++.|..|..- -.+.+          ..+.........+.-+  +|.
T Consensus       239 ~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d  316 (385)
T KOG1034|consen  239 THFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD  316 (385)
T ss_pred             cccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec
Confidence                   112366667777775  5789998889999999872 12211          1111111223334444  455


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCc-E-EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         290 PKNTEHFVVCNKTNTVVIMNMQGQ-I-VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       290 ~~~~~~l~~~~~d~~i~i~d~~~~-~-~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      |-. ++++.|...|.+.+||++.. + ..+...+......|...+|+.||..|+..++|+.|.-||
T Consensus       317 ~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  317 PWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             HHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            655 78999999999999999432 2 111122223367899999999999999999999998554

>KOG0642|consensus

Probab=99.86  E-value=4.2e-21  Score=170.98  Aligned_cols=255  Identities=16%  Similarity=0.248  Sum_probs=192.3

Q ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448          95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      .+..|.+.|+.++|.|....|++++.||++.+|++++...-......+...+.+|.++|.|+++.+++..+++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            44579999999999999999999999999999999664444445566777889999999999999999999999999999


Q ss_pred             EEEEcCCC---------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec--cccceeEEEE
Q psy8448         175 KIWKIATG---------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG--HSSFVNDITF  243 (482)
Q Consensus       175 ~iwd~~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~l~~  243 (482)
                      +.|++..+         ..+.....+|...++.+++++....|++++.||+++.|+.....+ .++..  ..+...++++
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence            99965421         122222368999999999999988999999999999999876655 33322  2233456666


Q ss_pred             cCCC-CEEEEEeCCCcEEEEECCCCceeeeeeccC----CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448         244 TADG-HSVLSASSDGTVKMWNLKTTECTSTFKSLG----ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS  317 (482)
Q Consensus       244 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  317 (482)
                      -... ...++...-+.-.++++........+....    .....+..+.++|.. .+.+++..|+.|+++|. ++..+..
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s  526 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHS  526 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceecccccccccchh
Confidence            4432 222222233333444444444444433211    112457778888988 89999999999999999 6887777


Q ss_pred             ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         318 LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ...+   ...++++++.|+|.+|++++.|+.+++|.+
T Consensus       527 ~~a~---~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  527 MVAH---KDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             eeec---cceecceeecCCCceEEeecCCceeehhhc
Confidence            7665   678999999999999999999999996654

>KOG0290|consensus

Probab=99.86  E-value=8.2e-20  Score=149.63  Aligned_cols=274  Identities=17%  Similarity=0.262  Sum_probs=192.8

Q ss_pred             CCCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCC-----CEEEEEeCCCeEEEEecCC--Cceee
Q psy8448          64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDG-----QYLITGSVDGFIEVWNFTT--GKIRK  136 (482)
Q Consensus        64 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-----~~l~s~~~dg~v~iwd~~~--~~~~~  136 (482)
                      ++.|..+..+.+.+.+-....+.-.....  -.+.|.-+++.+.|.|+.     ++||+++  -.+++|.+..  .+...
T Consensus        62 la~gS~~Ee~~Nkvqiv~ld~~s~e~~~~--a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~  137 (364)
T KOG0290|consen   62 LAVGSFIEEYNNKVQIVQLDEDSGELVED--ANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL  137 (364)
T ss_pred             EEEeeeccccCCeeEEEEEccCCCceecc--CCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh
Confidence            34555666666666665554332222222  225899999999999976     3566654  4699999874  22221


Q ss_pred             ccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeE---eEEeecccCCCeEEEEEccCC-CEEEEE
Q psy8448         137 DLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKIATGQC---LRKLEKAHSLGVTCIQFSRDN-SQILTA  211 (482)
Q Consensus       137 ~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~-~~l~~~  211 (482)
                      ...... .+-..+..++++..|+. +-++|.+++-|-+..|||++++..   ...+ ..|...|..++|...+ +.+++.
T Consensus       138 ~~~L~~-~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL-IAHDKEV~DIaf~~~s~~~FASv  215 (364)
T KOG0290|consen  138 QSVLNN-NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL-IAHDKEVYDIAFLKGSRDVFASV  215 (364)
T ss_pred             hhhhcc-CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE-EecCcceeEEEeccCccceEEEe
Confidence            111111 12234568999999998 778999999999999999998733   3344 6899999999999854 578899


Q ss_pred             ECCCeEEEEeCCCCceEEEee---ccccceeEEEEcCC-CCEEEEEeC-CCcEEEEECCCCc-eeeeeeccCCCccceeE
Q psy8448         212 SFDTYVRIHGLKSGKMLKEFR---GHSSFVNDITFTAD-GHSVLSASS-DGTVKMWNLKTTE-CTSTFKSLGASDIAVNS  285 (482)
Q Consensus       212 ~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~l~~~~~-~~~l~~~~~-dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~  285 (482)
                      +.||.+++||++..+.-..+.   ....+...++|+++ -+++++-.. ...|.|.|++... ++..++   +|...|+.
T Consensus       216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~---~H~a~VNg  292 (364)
T KOG0290|consen  216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR---NHQASVNG  292 (364)
T ss_pred             cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh---cCcccccc
Confidence            999999999999876544332   23567889999984 466666554 4569999999753 455555   99999999


Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecC---CcccCcCEEEEEEcCC-CCEEEEEeCC
Q psy8448         286 IHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSS---GKREGGDFLCCTTSPR-GEWIYCVGED  346 (482)
Q Consensus       286 i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~-g~~l~~~~~d  346 (482)
                      ++|.|.....+++++.|....+||+..........   .-...+.|..+.|++. +.+++.+...
T Consensus       293 IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  293 IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence            99999999999999999999999994221111100   0112678999999964 6677766543

>KOG0642|consensus

Probab=99.86  E-value=6.9e-21  Score=169.59  Aligned_cols=247  Identities=19%  Similarity=0.293  Sum_probs=187.5

Q ss_pred             ccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC--------CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCe
Q psy8448         145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT--------GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTY  216 (482)
Q Consensus       145 ~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~  216 (482)
                      .+..|.+.|..+.|.|....|++++.||.+.+|+++.        -+++.++ .+|.++|.|+++.+++..+++|+.||+
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCceEEEeeccCce
Confidence            5566889999999999999999999999999999932        2456777 799999999999999999999999999


Q ss_pred             EEEEeCCCC----------ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEE
Q psy8448         217 VRIHGLKSG----------KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSI  286 (482)
Q Consensus       217 i~i~d~~~~----------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  286 (482)
                      |+.|++...          .....+.||.+.++.+++++....|++++.||+++.|+.....+ .++.....+. .-.++
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g-~Plsv  445 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG-YPLSV  445 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC-CcceE
Confidence            999965421          12346779999999999999999999999999999999877665 3343222222 23455


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcc----cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhh
Q psy8448         287 HLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR----EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKES  361 (482)
Q Consensus       287 ~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~----~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~  361 (482)
                      .+-.....+.++...-+.-.++++ ....+..+.....    ....+..+.++|.+.+.+++..|+.|+           
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir-----------  514 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR-----------  514 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee-----------
Confidence            554433233333333333344444 2333333332211    124567889999999999999999999           


Q ss_pred             cccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccC
Q psy8448         362 NLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTD  441 (482)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (482)
                             +++..++                               ++                             ..  
T Consensus       515 -------~~dn~~~-------------------------------~~-----------------------------l~--  525 (577)
T KOG0642|consen  515 -------FFDNKTG-------------------------------KI-----------------------------LH--  525 (577)
T ss_pred             -------ccccccc-------------------------------cc-----------------------------ch--
Confidence                   7777777                               44                             33  


Q ss_pred             cccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         442 PMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       442 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                              ....|...++++++.|+|.+|++++.||+|++|
T Consensus       526 --------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~  558 (577)
T KOG0642|consen  526 --------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLW  558 (577)
T ss_pred             --------heeeccceecceeecCCCceEEeecCCceeehh
Confidence                    777899999999999999999999999999998

>KOG0303|consensus

Probab=99.86  E-value=2.6e-19  Score=152.78  Aligned_cols=203  Identities=19%  Similarity=0.275  Sum_probs=162.0

Q ss_pred             cccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCe-------EeEEeecccCCCeEEEEEccC-CCEEEEEECC
Q psy8448         144 DNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKIATGQ-------CLRKLEKAHSLGVTCIQFSRD-NSQILTASFD  214 (482)
Q Consensus       144 ~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d  214 (482)
                      ..+.+|+++|..++|+| +.+.||+|+.|.+|.||++..+.       .+..+ .+|...|..++|+|. .+.|++++.|
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccchhhHhhccCC
Confidence            35678999999999999 66789999999999999986553       34455 689999999999994 4678899999


Q ss_pred             CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCc-cceeEEEEcCCCC
Q psy8448         215 TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASD-IAVNSIHLLPKNT  293 (482)
Q Consensus       215 g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~  293 (482)
                      ..|.+|++.+++.+.++. |...|.+++|+.+|.+|++++.|..|+|||.++++.+..-.   .|. ..-..+.|..++ 
T Consensus       154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl~~g-  228 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFLASG-  228 (472)
T ss_pred             ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc---cccCCCcceeEEeccC-
Confidence            999999999999998888 99999999999999999999999999999999999887764   333 233456677777 


Q ss_pred             CEEEEEe---CCCeEEEEEcC----CcEEEEecCCcccCcCEEEEEEcCCCCEEE-EEeCCcEEEEEeehh
Q psy8448         294 EHFVVCN---KTNTVVIMNMQ----GQIVRSLSSGKREGGDFLCCTTSPRGEWIY-CVGEDMVLVVRLIQQ  356 (482)
Q Consensus       294 ~~l~~~~---~d~~i~i~d~~----~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~-~~~~dg~i~iw~~~~  356 (482)
                      .++.+|-   .+..+-+||.+    .-.+..+..    ...|.---|.+|...|+ +|-.|+.|+.|.+..
T Consensus       229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt----SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDT----SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             ceeeeccccccccceeccCcccccCcceeEEecc----CCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            5444443   46789999983    222333433    44566667888988887 455799999887763

>KOG0322|consensus

Probab=99.85  E-value=1.2e-20  Score=152.31  Aligned_cols=284  Identities=15%  Similarity=0.168  Sum_probs=192.6

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      +.+|.+.|+++.|..++. |.+|..-|.|++|++++.+....+...       |...|+.+.--|+ ..+.+-+.|+.+.
T Consensus        10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~-------g~~~it~lq~~p~-d~l~tqgRd~~L~   80 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLF-------GRLFITNLQSIPN-DSLDTQGRDPLLI   80 (323)
T ss_pred             eccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhh-------ccceeeceeecCC-cchhhcCCCceEE
Confidence            348999999999998775 889999999999999988766665533       3678999999987 4688999999999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEcc-----CCC----EEEEEECCC-eEEEEeCCCCceEEEe----eccccceeEE
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSR-----DNS----QILTASFDT-YVRIHGLKSGKMLKEF----RGHSSFVNDI  241 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~-----~~~----~l~~~~~dg-~i~i~d~~~~~~~~~~----~~~~~~i~~l  241 (482)
                      +|++..+..+.    .|.-.++++.|.+     +++    .++.-+... .+.+-|......+...    .+..+.+.|.
T Consensus        81 lw~ia~s~~i~----i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   81 LWTIAYSAFIS----IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EEEccCcceEE----EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence            99997654432    2334444554433     211    111111110 1222222111111111    1234556666


Q ss_pred             EEcC-CCC--EEEEEeCCCcEEEEECCCCceeeeee-------ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         242 TFTA-DGH--SVLSASSDGTVKMWNLKTTECTSTFK-------SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       242 ~~~~-~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      .+.- ++.  ++++|.++|.+.+||+.++..+..++       ....|..+|.++.+.+.. ..=++++.+..+..|+++
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~  235 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLN  235 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeec
Confidence            6543 232  45678889999999999975443332       122678899999998765 455777778888999884


Q ss_pred             ---CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccce
Q psy8448         312 ---GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFI  388 (482)
Q Consensus       312 ---~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (482)
                         +...... ........+..+..-||++.+|+++.|++|+||                  .-++.             
T Consensus       236 ~s~gslq~~~-e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVy------------------swrtl-------------  283 (323)
T KOG0322|consen  236 HSTGSLQIRK-EITLKNPGVSGVRIRPDGKILATAGWDHRIRVY------------------SWRTL-------------  283 (323)
T ss_pred             cccCcccccc-eEEecCCCccceEEccCCcEEeecccCCcEEEE------------------EeccC-------------
Confidence               2211111 111114457788999999999999999999955                  44444             


Q ss_pred             eccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcc
Q psy8448         389 ADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQN  468 (482)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  468 (482)
                                        ..                             ..          .+.-|++.|++++|+|+.+
T Consensus       284 ------------------~p-----------------------------LA----------VLkyHsagvn~vAfspd~~  306 (323)
T KOG0322|consen  284 ------------------NP-----------------------------LA----------VLKYHSAGVNAVAFSPDCE  306 (323)
T ss_pred             ------------------Cc-----------------------------hh----------hhhhhhcceeEEEeCCCCc
Confidence                              11                             22          7778999999999999999


Q ss_pred             eEEEEecCceeecC
Q psy8448         469 LLGTYSEDGLLRFS  482 (482)
Q Consensus       469 ~l~s~~~Dg~i~iW  482 (482)
                      ++|.||.|++|-+|
T Consensus       307 lmAaaskD~rISLW  320 (323)
T KOG0322|consen  307 LMAAASKDARISLW  320 (323)
T ss_pred             hhhhccCCceEEee
Confidence            99999999999998

>KOG1524|consensus

Probab=99.85  E-value=4.7e-20  Score=163.21  Aligned_cols=227  Identities=15%  Similarity=0.192  Sum_probs=170.4

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-------CCCEEEEEeC
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-------DSEMLASGSQ  170 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-------~~~~l~~~~~  170 (482)
                      .|...|.|+.|+.+...+.+++ |..+.+|.--+............       .-.+.+..-+       ....|+.++.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~d-------f~pt~~h~~~rs~~~g~~~d~~~i~s~   83 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDD-------FVPTDMHLGGRSSGGGKGSDTLLICSN   83 (737)
T ss_pred             ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcc-------cCCccccccccccCCCCCcceEEEEcC
Confidence            5777788999998887776665 55565555433332222222211       0111111111       2357899999


Q ss_pred             CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448         171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  250 (482)
                      ||.+.+.+ +.++.-+.+ ..|.+.+.+-.|+|+|.-|+++++||.|++|. ++|....++.....+|.|++|.|+.+.+
T Consensus        84 DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~v  160 (737)
T KOG1524|consen   84 DGRFVILN-KSARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSI  160 (737)
T ss_pred             CceEEEec-ccchhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCce
Confidence            99999998 566666666 68999999999999999999999999999999 5776666666677899999999988776


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEE
Q psy8448         251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLC  330 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~  330 (482)
                      +.+. .+.+.|=.+.....+..++   .|++-|.++.|++.. +++++|+.|-..++||..|..+..-..+   ..+|++
T Consensus       161 l~c~-g~h~~IKpL~~n~k~i~Wk---AHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~Lf~S~~~---ey~ITS  232 (737)
T KOG1524|consen  161 VFCQ-GGHISIKPLAANSKIIRWR---AHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGANLFTSAAE---EYAITS  232 (737)
T ss_pred             EEec-CCeEEEeecccccceeEEe---ccCcEEEEeecCccc-cceeecCCceeEEeecccCcccccCChh---ccceee
Confidence            6554 3567777777666666777   999999999999998 8999999999999999999887766654   889999


Q ss_pred             EEEcCCCCEEEEEe
Q psy8448         331 CTTSPRGEWIYCVG  344 (482)
Q Consensus       331 ~~~~~~g~~l~~~~  344 (482)
                      ++|.|+ ..++.++
T Consensus       233 va~npd-~~~~v~S  245 (737)
T KOG1524|consen  233 VAFNPE-KDYLLWS  245 (737)
T ss_pred             eeeccc-cceeeee
Confidence            999999 4444443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=6.9e-18  Score=161.83  Aligned_cols=242  Identities=29%  Similarity=0.530  Sum_probs=193.9

Q ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc-eeeccccccccccccccccEEEEEE-cCCCC-EEEEEeC-
Q psy8448          95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGK-IRKDLKYQAQDNFMLMEEAVMSLAY-SRDSE-MLASGSQ-  170 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~h~~~i~~l~~-~~~~~-~l~~~~~-  170 (482)
                      ....|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+....       ...+..+.+ ++++. .++..+. 
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  132 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH-------DSSVSKLALSSPDGNSILLASSSL  132 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccC-------CCceeeEEEECCCcceEEeccCCC
Confidence            445899999999999999999999999999999998876 333333321       135666666 78777 5555444 


Q ss_pred             CCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         171 SGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       171 dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      |+.+.+|+... ......+ ..|...|..++|+|++..+++++. |+.+++|++..+..+..+.+|...+.+++|+|++.
T Consensus       133 d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  211 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG  211 (466)
T ss_pred             CccEEEEEecCCCeEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence            99999999987 5666666 689999999999999998888885 99999999999888999999999999999999998


Q ss_pred             -EEEEEeCCCcEEEEECCCCceee-eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcE-EEEecCCccc
Q psy8448         249 -SVLSASSDGTVKMWNLKTTECTS-TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQI-VRSLSSGKRE  324 (482)
Q Consensus       249 -~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~-~~~~~~~~~~  324 (482)
                       .+++++.|+.|++||...+.... .+.   .|.... -..|+|++ ..+++++.++.+++|+.. ... +..+   ..+
T Consensus       212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~  283 (466)
T COG2319         212 LLIASGSSDGTIRLWDLSTGKLLRSTLS---GHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTL---SGH  283 (466)
T ss_pred             eEEEEecCCCcEEEEECCCCcEEeeecC---CCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEE---ecC
Confidence             55555899999999988777666 344   555553 33899998 788899999999999994 332 3444   223


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         325 GGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       325 ~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      ...+.++.|+|++..+++++.|+.+.+|
T Consensus       284 ~~~v~~~~~~~~~~~~~~~~~d~~~~~~  311 (466)
T COG2319         284 SSSVLSVAFSPDGKLLASGSSDGTVRLW  311 (466)
T ss_pred             CccEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            7889999999999999999999888844

>KOG1310|consensus

Probab=99.85  E-value=1.1e-19  Score=161.49  Aligned_cols=206  Identities=17%  Similarity=0.278  Sum_probs=152.1

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeCCCc
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQSGK  173 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~dg~  173 (482)
                      +.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+..       +|...|.++.|-|  +.+.+++|..|..
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccCCCeEEEeccCcce
Confidence            459999999999999999999999999999999987777666554       4789999999999  5668889999999


Q ss_pred             EEEEEcCCC----------eEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceE----------EEee
Q psy8448         174 VKIWKIATG----------QCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKML----------KEFR  232 (482)
Q Consensus       174 i~iwd~~~~----------~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----------~~~~  232 (482)
                      |+++|+...          +....+ ..|...|..++-.|++ ..+.++++||+|+-+|++.....          ..+.
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             EEEEecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence            999999742          223333 5788889999999988 67889999999999999874211          1111


Q ss_pred             ccccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCC--------c----------eeeeeeccC-----C-Cc---ccee
Q psy8448         233 GHSSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTT--------E----------CTSTFKSLG-----A-SD---IAVN  284 (482)
Q Consensus       233 ~~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~--------~----------~~~~~~~~~-----~-~~---~~v~  284 (482)
                      ..--...|+.++|. ..+|++|+.|-..++||.+..        .          ++..+..-.     + ..   ..++
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t  277 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT  277 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence            22234678899995 467889999999999995421        1          122221100     0 01   1256


Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         285 SIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       285 ~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                      -++|+|+|.++|+. -....|+++|+
T Consensus       278 ~vtfnpNGtElLvs-~~gEhVYlfdv  302 (758)
T KOG1310|consen  278 YVTFNPNGTELLVS-WGGEHVYLFDV  302 (758)
T ss_pred             EEEECCCCcEEEEe-eCCeEEEEEee
Confidence            78899999555554 44457888887

>KOG1188|consensus

Probab=99.84  E-value=1.1e-19  Score=152.20  Aligned_cols=270  Identities=19%  Similarity=0.315  Sum_probs=193.8

Q ss_pred             eeeccCCccccccccccccccccceeeecCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeecccccccccc
Q psy8448          69 TIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP--DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNF  146 (482)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  146 (482)
                      .+.+..+.+.+++.....+-..+     .+|...++.++|..  ....+.+|+.||+|++||++.......+......  
T Consensus        44 av~lSngsv~lyd~~tg~~l~~f-----k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--  116 (376)
T KOG1188|consen   44 AVSLSNGSVRLYDKGTGQLLEEF-----KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS--  116 (376)
T ss_pred             EEEecCCeEEEEeccchhhhhee-----cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC--
Confidence            44555777777776654333333     27888888999977  5678899999999999999988776666555421  


Q ss_pred             ccccccEEEEEEcCCCCEEEEEe----CCCcEEEEEcCCCeE-eEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEE
Q psy8448         147 MLMEEAVMSLAYSRDSEMLASGS----QSGKVKIWKIATGQC-LRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIH  220 (482)
Q Consensus       147 ~~h~~~i~~l~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~  220 (482)
                         ..+..+++.+..++.+++|+    .+-.|.+||++..+. ++.+...|...|+++.|+| +..+|++|+.||.|.+|
T Consensus       117 ---~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf  193 (376)
T KOG1188|consen  117 ---GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF  193 (376)
T ss_pred             ---CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence               25778888887888888875    456899999998877 7888788999999999999 56789999999999999


Q ss_pred             eCCCCce----EEEeeccccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeccCC----------CccceeE
Q psy8448         221 GLKSGKM----LKEFRGHSSFVNDITFTADG-HSVLSASSDGTVKMWNLKTTECTSTFKSLGA----------SDIAVNS  285 (482)
Q Consensus       221 d~~~~~~----~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~  285 (482)
                      |++....    +.++ .|...|.++.|..++ +.|.+-+..+...+|+++.+.+...+.....          ...-|. 
T Consensus       194 D~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-  271 (376)
T KOG1188|consen  194 DTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-  271 (376)
T ss_pred             ecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-
Confidence            9975532    2333 377889999999876 4588889999999999998876555432110          011111 


Q ss_pred             EEEcCCCCCEEEEEeC-CCeEEEEEcC----C---cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         286 IHLLPKNTEHFVVCNK-TNTVVIMNMQ----G---QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       286 i~~~~~~~~~l~~~~~-d~~i~i~d~~----~---~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                       ..+|.+...+++++. -+...++-+.    +   +.+..+.++  +..-|+++.|...+.++++|++||.+.+|.
T Consensus       272 -~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~--~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  272 -EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG--HEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             -cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC--cHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence             122444455555544 5555555442    2   233333333  366788899999999999999999999775

>KOG1587|consensus

Probab=99.83  E-value=2.3e-18  Score=161.29  Aligned_cols=222  Identities=19%  Similarity=0.224  Sum_probs=158.0

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeE-----eEEeecccCCC
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKIATGQC-----LRKLEKAHSLG  195 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~  195 (482)
                      +.+.||++.+.... .+....       ...|+++.|+| +.++++.|+.+|+|.+||++.+..     +......|..+
T Consensus       222 ~~~~vW~~~~p~~P-e~~~~~-------~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~  293 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTP-ELVLES-------PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP  293 (555)
T ss_pred             ceEEEEecCCCCCc-eEEEec-------CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence            47999999876222 222222       47899999999 667888888999999999987654     23333578899


Q ss_pred             eEEEEEccCC--CEEEEEECCCeEEEEeCCCCceEE------Eee------ccccceeEEEEcC-CCCEEEEEeCCCcEE
Q psy8448         196 VTCIQFSRDN--SQILTASFDTYVRIHGLKSGKMLK------EFR------GHSSFVNDITFTA-DGHSVLSASSDGTVK  260 (482)
Q Consensus       196 v~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~------~~~------~~~~~i~~l~~~~-~~~~l~~~~~dg~i~  260 (482)
                      +..+.|..+-  .-+++++.||.|..|+++.-....      ...      .....+++++|.+ +...+++|+.+|.|.
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~  373 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY  373 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence            9999997643  449999999999999987543211      111      1234578999988 456789999999887


Q ss_pred             EEECCCCceee-----eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEE
Q psy8448         261 MWNLKTTECTS-----TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTT  333 (482)
Q Consensus       261 i~d~~~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~  333 (482)
                      --+....+...     .......|.++|.++.++|-+..+|++++ |.+++||...  ..++..+...   ...+++++|
T Consensus       374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~---~~~v~~vaW  449 (555)
T KOG1587|consen  374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSS---PDYVTDVAW  449 (555)
T ss_pred             EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhc---cceeeeeEE
Confidence            74333222111     12233378899999999999966666666 9999999974  4455555443   456999999


Q ss_pred             cCCCC-EEEEEeCCcEEEEEeeh
Q psy8448         334 SPRGE-WIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       334 ~~~g~-~l~~~~~dg~i~iw~~~  355 (482)
                      ||... .++++..||.+.|||+.
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhh
Confidence            99875 45577779999977653

>KOG1523|consensus

Probab=99.83  E-value=2.6e-18  Score=142.85  Aligned_cols=233  Identities=12%  Similarity=0.226  Sum_probs=178.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ..+|+|.+|++|+..+|.+.....|.||.....+.     ......+..|...|++++|+|..+.|++|+.|..-++|..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----ceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            57899999999999999999999999999877652     2233345557899999999999999999999999999998


Q ss_pred             -CCCeE--eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE----EEeeccccceeEEEEcCCCCEEEE
Q psy8448         180 -ATGQC--LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML----KEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       180 -~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                       ..++-  ...+ ..++..++++.|+|.++.|++|+....|.||-.+...--    ..-+.+.+.|++++|+|++-+|++
T Consensus        85 ~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   85 PSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence             44432  2233 457888999999999999999999999999887654432    223456788999999999999999


Q ss_pred             EeCCCcEEEEECC-----C-------------CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-
Q psy8448         253 ASSDGTVKMWNLK-----T-------------TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ-  313 (482)
Q Consensus       253 ~~~dg~i~i~d~~-----~-------------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-  313 (482)
                      |+.|+..++|..-     .             |+.+..+.   ...+.+..+.|+|+| ..|+-.+.|..+.+-|..+. 
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCc
Confidence            9999999999742     1             11122221   446789999999999 88999999999999998654 


Q ss_pred             -EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         314 -IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       314 -~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                       .+......   ..+..++.|-.+.. ++.++.|
T Consensus       240 ~~v~~~~~~---~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  240 ERVQSVATA---QLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             hhccchhhc---cCCceeeEeecCCc-eeecCCC
Confidence             34444433   46677777765543 3344444

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=2.3e-17  Score=151.45  Aligned_cols=224  Identities=15%  Similarity=0.219  Sum_probs=146.9

Q ss_pred             EEEeCCCeEEEEecCC-Cce--eeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC-CeE--eEEe
Q psy8448         116 ITGSVDGFIEVWNFTT-GKI--RKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIAT-GQC--LRKL  188 (482)
Q Consensus       116 ~s~~~dg~v~iwd~~~-~~~--~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~  188 (482)
                      ++...++.|.+|++.+ ++.  +..+..         ......++++|++++|++++ .++.|.+|++.. ++.  ....
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~---------~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~   76 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDV---------PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES   76 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEec---------CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee
Confidence            4446789999999964 332  222211         24577889999999887765 578999999863 332  2222


Q ss_pred             ecccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCC-c---eEEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEE
Q psy8448         189 EKAHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSG-K---MLKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMW  262 (482)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~-~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~  262 (482)
                        ........++|+|+++++++++. ++.|.+|++++. .   .+..+. +...+.+++++|+++++++++ .++.|.+|
T Consensus        77 --~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~  153 (330)
T PRK11028         77 --PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLF  153 (330)
T ss_pred             --cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence              23345678999999999888764 789999999642 2   222222 233467889999999886655 56899999


Q ss_pred             ECCCCceeee-----eeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEcC---Cc--EEEEecCCc---ccCcCE
Q psy8448         263 NLKTTECTST-----FKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNMQ---GQ--IVRSLSSGK---REGGDF  328 (482)
Q Consensus       263 d~~~~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~~---~~--~~~~~~~~~---~~~~~v  328 (482)
                      |+.+...+..     ...  ........++|+|++ ++++++. .++.|.+|+++   +.  .+..+....   ......
T Consensus       154 d~~~~g~l~~~~~~~~~~--~~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  230 (330)
T PRK11028        154 TLSDDGHLVAQEPAEVTT--VEGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA  230 (330)
T ss_pred             EECCCCcccccCCCceec--CCCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence            9986332211     111  123345789999999 5555555 48999999994   22  222222110   011223


Q ss_pred             EEEEEcCCCCEEEEEeC-CcEEEEEee
Q psy8448         329 LCCTTSPRGEWIYCVGE-DMVLVVRLI  354 (482)
Q Consensus       329 ~~~~~~~~g~~l~~~~~-dg~i~iw~~  354 (482)
                      ..+.++|+|++++++.. ++.|.+|++
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            46889999999998864 688996554

>KOG1334|consensus

Probab=99.83  E-value=1.7e-19  Score=157.94  Aligned_cols=290  Identities=17%  Similarity=0.258  Sum_probs=217.0

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeCCCc
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQSGK  173 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~dg~  173 (482)
                      +.+|.+.|+.+.|+..|..|++|+.|..|.+||...++....+...       |...|....|-|  +.+.+++++.||.
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SG-------H~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESG-------HCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccc-------cccchhhhhccCCCCCcCceeccccCc
Confidence            4599999999999999999999999999999999988766555433       677888888888  4567999999999


Q ss_pred             EEEEEcCCCeE---eEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEee---cccc---ceeEEEE
Q psy8448         174 VKIWKIATGQC---LRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEFR---GHSS---FVNDITF  243 (482)
Q Consensus       174 i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~---~i~~l~~  243 (482)
                      +++=.+.....   ...+ ..|.++|..++.-|+. ..|.+++.|+.+.-+|+++..+...+.   .+..   ....++.
T Consensus       211 vr~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~  289 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV  289 (559)
T ss_pred             eeeeeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence            99887644322   2233 6799999999999965 558899999999999999876543332   2233   4678888


Q ss_pred             cCCCC-EEEEEeCCCcEEEEECCCCcee------eeeec---cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--
Q psy8448         244 TADGH-SVLSASSDGTVKMWNLKTTECT------STFKS---LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--  311 (482)
Q Consensus       244 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~------~~~~~---~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--  311 (482)
                      +|-.. .+++++.|..+++||.+.-...      ..+..   .......|++++|+.++. -++++..|-.|+++...  
T Consensus       290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~  368 (559)
T KOG1334|consen  290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS-ELLASYNDEDIYLFNKSMG  368 (559)
T ss_pred             CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc-ceeeeecccceEEeccccc
Confidence            98654 7899999999999998763321      22211   113345789999998884 45556667788998652  


Q ss_pred             -C----------cEEEEecCCcccCcCEEEEE-EcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceee
Q psy8448         312 -G----------QIVRSLSSGKREGGDFLCCT-TSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN  379 (482)
Q Consensus       312 -~----------~~~~~~~~~~~~~~~v~~~~-~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (482)
                       |          ..+.....++.....|..+- |-|...|+++|++-|.|.                  +|+-.++    
T Consensus       369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF------------------iW~K~t~----  426 (559)
T KOG1334|consen  369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF------------------IWDKKTG----  426 (559)
T ss_pred             cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE------------------EEecchh----
Confidence             3          23333223333345577765 468889999999999999                  6666666    


Q ss_pred             cccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccccee
Q psy8448         380 TVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVI  459 (482)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  459 (482)
                                                 ++                             +.          .+.+...-|+
T Consensus       427 ---------------------------ei-----------------------------i~----------~MegDr~VVN  440 (559)
T KOG1334|consen  427 ---------------------------EI-----------------------------IR----------FMEGDRHVVN  440 (559)
T ss_pred             ---------------------------HH-----------------------------HH----------HhhcccceEe
Confidence                                       33                             22          4555555899


Q ss_pred             eccccCCcceEEEEecCceeecC
Q psy8448         460 GLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       460 ~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      |+.-+|--..|||+|-|..|+||
T Consensus       441 CLEpHP~~PvLAsSGid~DVKIW  463 (559)
T KOG1334|consen  441 CLEPHPHLPVLASSGIDHDVKIW  463 (559)
T ss_pred             ccCCCCCCchhhccCCccceeee
Confidence            99999999999999999999999

>KOG0649|consensus

Probab=99.83  E-value=8.3e-18  Score=134.54  Aligned_cols=241  Identities=18%  Similarity=0.282  Sum_probs=172.5

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc--cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ--AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      .|.+-+++|.+++|++|..+|.|.+..+++..........  ..-...+|+.+|+.++|.  ..+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            4666689999999999999999999998753211111110  111236789999999998  44666665 599999987


Q ss_pred             CCCeE------eEEee-ccc-----CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448         180 ATGQC------LRKLE-KAH-----SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       180 ~~~~~------~~~~~-~~~-----~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      +....      +.... ..+     -..|+++-..|....++.++.|+.++-||+++|+...++++|++.|.++.-....
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence            54322      11111 111     2358899999977777777789999999999999999999999999999986666


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeccCC-------CccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEec
Q psy8448         248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGA-------SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLS  319 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~  319 (482)
                      ..+++|+.||++++||+++++++..+.....       -...|.+++.+.   . .++|+....+.+|.++ ......+.
T Consensus       169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---d-WlvCGgGp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---D-WLVCGGGPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---c-eEEecCCCceeEEeccCCCceEEEe
Confidence            6799999999999999999999988865431       123355555443   3 3455566789999995 44444444


Q ss_pred             CCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         320 SGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       320 ~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      .    ..++..+.|..  +.+++++..+.+.-|.+.
T Consensus       245 i----pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  245 I----PARVHLVDFVD--DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             c----ccceeEeeeec--ceEEEeccccceeeeeec
Confidence            3    45677788854  478888888888855443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=1.7e-16  Score=152.09  Aligned_cols=266  Identities=30%  Similarity=0.510  Sum_probs=195.3

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEE-cCCCC-EEEEEeC-CCeEEEEecCC-Cceeeccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARF-SPDGQ-YLITGSV-DGFIEVWNFTT-GKIRKDLKYQAQDNFMLM  149 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~-~l~s~~~-dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h  149 (482)
                      ++.+.+|+.....   .....+...+...+..+.+ ++++. .++..+. |+.+.+|+... ......+        ..|
T Consensus        86 d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~  154 (466)
T COG2319          86 DGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL--------EGH  154 (466)
T ss_pred             CCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE--------ecC
Confidence            4556666655443   1222222123247777777 88887 5555444 89999999987 3333333        335


Q ss_pred             cccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCCce
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQ-SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKM  227 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~  227 (482)
                      ...|..++|+|++..+++++. |+.+++|++..+.....+ ..|...+.+++|+|++. .+++++.|+.|++||...+..
T Consensus       155 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~  233 (466)
T COG2319         155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL  233 (466)
T ss_pred             cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE
Confidence            788999999999998888885 999999999987777777 56899999999999988 555558999999999988887


Q ss_pred             EE-EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         228 LK-EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC-TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       228 ~~-~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                      .. .+..|.... ...|+|++..+++++.|+.+++|+++.... ...+   ..|...+.++.|.|++ ..+++++.|+.+
T Consensus       234 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~-~~~~~~~~d~~~  308 (466)
T COG2319         234 LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDG-KLLASGSSDGTV  308 (466)
T ss_pred             EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCC-CEEEEeeCCCcE
Confidence            77 688888775 448999998899999999999999997665 3333   2678899999999977 566668888889


Q ss_pred             EEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEE-eCCcEEEEEeehhh
Q psy8448         306 VIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV-GEDMVLVVRLIQQY  357 (482)
Q Consensus       306 ~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~-~~dg~i~iw~~~~~  357 (482)
                      .+|+.. ........ ...+...+..+.+.+++..++.+ ..|+.+.+|+....
T Consensus       309 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  361 (466)
T COG2319         309 RLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG  361 (466)
T ss_pred             EEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence            999885 33333333 11224468888884343566655 68889998877643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=4.4e-17  Score=149.58  Aligned_cols=267  Identities=14%  Similarity=0.241  Sum_probs=170.9

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEecCC-Cceeeccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGS-VDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~  151 (482)
                      ++.+.+|+..... .......+  .+.+....++++|++++|++++ .++.|.+|++.. ++....-...       ...
T Consensus        11 ~~~I~~~~~~~~g-~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-------~~~   80 (330)
T PRK11028         11 SQQIHVWNLNHEG-ALTLLQVV--DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-------LPG   80 (330)
T ss_pred             CCCEEEEEECCCC-ceeeeeEE--ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-------CCC
Confidence            4556666664221 22233333  2345677899999999987764 578899999973 3321111111       123


Q ss_pred             cEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCe----EeEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCC
Q psy8448         152 AVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQ----CLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSG  225 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~  225 (482)
                      ....++++|++++|++++ .++.|.+|++.+..    ....+  .+.....+++++|+++++++++ .++.|.+||+++.
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            467899999999888876 47899999996432    22222  2334567789999999886655 5689999999764


Q ss_pred             ceEEE-----ee-ccccceeEEEEcCCCCEEEEEeC-CCcEEEEECCC--Cc--eeeeeeccCC---CccceeEEEEcCC
Q psy8448         226 KMLKE-----FR-GHSSFVNDITFTADGHSVLSASS-DGTVKMWNLKT--TE--CTSTFKSLGA---SDIAVNSIHLLPK  291 (482)
Q Consensus       226 ~~~~~-----~~-~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~~~---~~~~v~~i~~~~~  291 (482)
                      ..+..     .. ........+.|+|++++++++.. ++.|.+|+++.  ++  .+..+.....   .......+.++|+
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd  238 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD  238 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence            32211     11 12344678999999999988876 89999999973  22  2333321111   1122346889999


Q ss_pred             CCCEEEEEe-CCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC-CcEEEEEee
Q psy8448         292 NTEHFVVCN-KTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE-DMVLVVRLI  354 (482)
Q Consensus       292 ~~~~l~~~~-~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~-dg~i~iw~~  354 (482)
                      + ++++++. .++.|.+|++.  +..+.... ..........++++|+|++|++++. ++.|.+|++
T Consensus       239 g-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~-~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        239 G-RHLYACDRTASLISVFSVSEDGSVLSFEG-HQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             C-CEEEEecCCCCeEEEEEEeCCCCeEEEeE-EEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            8 5666654 57899999983  32222221 1111223457899999999998775 889996654

>KOG1445|consensus

Probab=99.81  E-value=9e-19  Score=158.25  Aligned_cols=238  Identities=16%  Similarity=0.240  Sum_probs=168.6

Q ss_pred             EcCCCCEEEE--EeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCe-
Q psy8448         108 FSPDGQYLIT--GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKIATGQ-  183 (482)
Q Consensus       108 ~s~~~~~l~s--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~-  183 (482)
                      |..+.+++|.  .+..|.|-||+++....+..-.....    .....|+.+.|.| |...|++++.||.|++|.+..+. 
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l----~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl  662 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL  662 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc----ccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence            3334555553  34578999999975332211111110    0135799999999 78899999999999999986542 


Q ss_pred             ------EeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC
Q psy8448         184 ------CLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD  256 (482)
Q Consensus       184 ------~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d  256 (482)
                            ....+ ..|...|+++.|+| -...|++++.|.+|++||+++++....+.+|.+.|..++|+|+|+.+++.+.|
T Consensus       663 ~e~~~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD  741 (1012)
T KOG1445|consen  663 PENEMTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD  741 (1012)
T ss_pred             CcccCCcceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecC
Confidence                  22334 67999999999999 55689999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEECCCCce-eeeeeccCCCccceeEEEEcCCCCCEEEEEeCC----CeEEEEEcC---CcEEEEecCCcccCcCE
Q psy8448         257 GTVKMWNLKTTEC-TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT----NTVVIMNMQ---GQIVRSLSSGKREGGDF  328 (482)
Q Consensus       257 g~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d----~~i~i~d~~---~~~~~~~~~~~~~~~~v  328 (482)
                      |+|++|+.++++. +..-+.  .-...-..|.|..+| +++++.+.|    ..|.+||..   +..+.+..-..  ...+
T Consensus       742 g~~rVy~Prs~e~pv~Eg~g--pvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--aps~  816 (1012)
T KOG1445|consen  742 GTLRVYEPRSREQPVYEGKG--PVGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--APSP  816 (1012)
T ss_pred             ceEEEeCCCCCCCccccCCC--CccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhccCCcceeeeecc--cCcc
Confidence            9999999988653 222111  112233468888888 666665544    568888873   34444333221  1112


Q ss_pred             EEEEEcCCCC-EEEEEeCCcEEEEEeeh
Q psy8448         329 LCCTTSPRGE-WIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       329 ~~~~~~~~g~-~l~~~~~dg~i~iw~~~  355 (482)
                      .--.+.+|.. .+++|-.|..|++|.+-
T Consensus       817 LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  817 LVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             ccccccCCCceEEEecCCCceEEEEEec
Confidence            2234556655 45578889999988763

>KOG1517|consensus

Probab=99.80  E-value=7.5e-18  Score=160.84  Aligned_cols=275  Identities=15%  Similarity=0.238  Sum_probs=196.8

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEecCCC-----ceeecccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP--DGQYLITGSVDGFIEVWNFTTG-----KIRKDLKYQAQDNF  146 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~  146 (482)
                      +..+.+|+.+....-..+...-  .....|+.+.+-.  |..++++|+.||.|+||+--..     +++.-.. ......
T Consensus      1085 r~~i~vwd~e~~~~l~~F~n~~--~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~-~Ls~~~ 1161 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGA--FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS-SLSDQL 1161 (1387)
T ss_pred             cceEEEEecccCceeccccCCC--CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec-cccccC
Confidence            5667888876655433333221  3356799999876  5678999999999999974322     1111111 111111


Q ss_pred             ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCC
Q psy8448         147 MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSG  225 (482)
Q Consensus       147 ~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~  225 (482)
                      .+-.+.=.-++|.....+|+++|.-..|+|||.........+..+....++++.-+- .|+.+++|..||.|++||.+..
T Consensus      1162 ~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1162 PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred             ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccC
Confidence            111222256678887677777777889999999988888877666666777776554 5789999999999999999865


Q ss_pred             c---eEEEeeccccc--eeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeeeeccCCC---ccceeEEEEcCCCCCEE
Q psy8448         226 K---MLKEFRGHSSF--VNDITFTADGH-SVLSASSDGTVKMWNLKTTECTSTFKSLGAS---DIAVNSIHLLPKNTEHF  296 (482)
Q Consensus       226 ~---~~~~~~~~~~~--i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~~l  296 (482)
                      .   .+...+.|...  |..+.+.+.|- .|++|+.+|.|++||++.......+. ...|   .+..+++..++.. .++
T Consensus      1242 ~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-iv~~~~yGs~lTal~VH~ha-pii 1319 (1387)
T KOG1517|consen 1242 PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-IVAHWEYGSALTALTVHEHA-PII 1319 (1387)
T ss_pred             CccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-eeeccccCccceeeeeccCC-Cee
Confidence            3   45667788887  99999998664 49999999999999999852222221 1121   2358999999987 788


Q ss_pred             EEEeCCCeEEEEEcCCcEEEEecCCc----ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         297 VVCNKTNTVVIMNMQGQIVRSLSSGK----REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       297 ~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ++|+. +.|+||++.|+.+..+....    ...+.+.|++|+|-.-.+++|+.|..|.||..
T Consensus      1320 AsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1320 ASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             eecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence            88888 99999999887766655321    12466789999999999999999999996643

>KOG0644|consensus

Probab=99.80  E-value=1.6e-19  Score=167.83  Aligned_cols=233  Identities=22%  Similarity=0.364  Sum_probs=182.7

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      +.||.+.|+|+.|...|.++++|+.|..|+||...++.+.....        ||++.|+.++.+.++..+++++.|..|+
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r--------Ghs~ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR--------GHSGDITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC--------CCccccchhccchhhhhhhhcccCceEE
Confidence            34999999999999999999999999999999998887665544        4689999999999999999999999999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe----e-ccccceeEEEEcCCCCEE
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF----R-GHSSFVNDITFTADGHSV  250 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~-~~~~~i~~l~~~~~~~~l  250 (482)
                      +|.+.++.++..+ .+|.+.|++++|+|-.    +.+.||++++||.+ ..+....    . .....+.++.|...+..+
T Consensus       258 vWrl~~~~pvsvL-rghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVL-RGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             EEecCCCchHHHH-hccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccc
Confidence            9999999999888 7999999999999954    67789999999987 2221111    1 123456778888888889


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448         251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~  329 (482)
                      ++++.|+.-..|.+....         .+...+.-+..+.+-..+.+++-.+-.+++|++ +|.....+..+   ...+.
T Consensus       332 ~Tgs~d~ea~n~e~~~l~---------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh---sd~~y  399 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLA---------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH---SDEVY  399 (1113)
T ss_pred             ccccCCcccccchhhHhh---------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc---cccee
Confidence            999999988888765422         122222223333333356677777888999999 77777766655   67788


Q ss_pred             EEEEcCCCCEEE-EEeCCcEEEEEee
Q psy8448         330 CCTTSPRGEWIY-CVGEDMVLVVRLI  354 (482)
Q Consensus       330 ~~~~~~~g~~l~-~~~~dg~i~iw~~  354 (482)
                      .+.++|-...++ +++.||...|||+
T Consensus       400 vLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  400 VLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             eeeecCCCcHhhhhccCCCceEeeec
Confidence            899999776665 8999999996663

>KOG0771|consensus

Probab=99.80  E-value=1.6e-17  Score=143.50  Aligned_cols=155  Identities=17%  Similarity=0.222  Sum_probs=116.6

Q ss_pred             EEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeecc
Q psy8448         197 TCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSL  276 (482)
Q Consensus       197 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  276 (482)
                      .+++|+.+|..+++++.||++|+|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++.++....+.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            679999999999999999999999988888888888899999999999999999999999 8999999999766655422


Q ss_pred             CCCccceeEEEEcCCC--CC-EEEE-EeCCCeEEEEEcC---CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE
Q psy8448         277 GASDIAVNSIHLLPKN--TE-HFVV-CNKTNTVVIMNMQ---GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL  349 (482)
Q Consensus       277 ~~~~~~v~~i~~~~~~--~~-~l~~-~~~d~~i~i~d~~---~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i  349 (482)
                       ..+.....+.|+.++  .. ++++ ....+.|+.|++.   +...............|++++.++||++++.|+.||.|
T Consensus       227 -~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  227 -SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             -ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence             334455667776654  12 2332 2334567777762   21111111111114578999999999999999999999


Q ss_pred             EEEe
Q psy8448         350 VVRL  353 (482)
Q Consensus       350 ~iw~  353 (482)
                      -|++
T Consensus       306 ai~~  309 (398)
T KOG0771|consen  306 AIYD  309 (398)
T ss_pred             EEEE
Confidence            9554

>KOG4227|consensus

Probab=99.80  E-value=2.6e-18  Score=146.62  Aligned_cols=207  Identities=14%  Similarity=0.186  Sum_probs=163.6

Q ss_pred             cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC------CCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeE
Q psy8448         144 DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA------TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV  217 (482)
Q Consensus       144 ~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i  217 (482)
                      ..+.+|.+.|+++.|+.++++|++|+.|..+++|++.      +.+++......|...|.|++|+..+.++++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            4567789999999999999999999999999999974      3466666666788999999999999999999999999


Q ss_pred             EEEeCCCCceEEEeec--cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCE
Q psy8448         218 RIHGLKSGKMLKEFRG--HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       218 ~i~d~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  295 (482)
                      ...|+++.+.+..+..  ..+.|..+..+|..+.|++.+.++.|.+||.+..........+.........+.|+|..+.+
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            9999999998877752  34589999999999999999999999999998765222222222455678899999999999


Q ss_pred             EEEEeCCCeEEEEEcCCcE--EEEecCCcc---cCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         296 FVVCNKTNTVVIMNMQGQI--VRSLSSGKR---EGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       296 l~~~~~d~~i~i~d~~~~~--~~~~~~~~~---~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +++.+..+-+-+||.+.+.  +........   ....-....|+|+|..+.+.-....-.
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~  269 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL  269 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence            9999999999999995332  222221111   122336789999999888765544444

>KOG2110|consensus

Probab=99.80  E-value=1.9e-16  Score=134.45  Aligned_cols=194  Identities=15%  Similarity=0.267  Sum_probs=158.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCC--CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         102 HVECARFSPDGQYLITGSVD--GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      .|--+-|+.+  ++|..+.+  ..+++.+++.+..+..+.+.         .+|.++.++.  ++|+++-.+ .|+|||+
T Consensus        48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---------t~IL~VrmNr--~RLvV~Lee-~IyIydI  113 (391)
T KOG2110|consen   48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP---------TSILAVRMNR--KRLVVCLEE-SIYIYDI  113 (391)
T ss_pred             EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC---------CceEEEEEcc--ceEEEEEcc-cEEEEec
Confidence            4566667754  55555443  46999999998888877765         5799999974  467777665 5999999


Q ss_pred             CCCeEeEEeecc--cCCCeEEEEEccCCCEEEEE--ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC
Q psy8448         180 ATGQCLRKLEKA--HSLGVTCIQFSRDNSQILTA--SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS  255 (482)
Q Consensus       180 ~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~  255 (482)
                      ++.+.+.++...  +...+.++.+++.+.+++.=  ...|.|.+||..+-+.+..+..|++.+-+++|+++|.+|++++.
T Consensus       114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe  193 (391)
T KOG2110|consen  114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE  193 (391)
T ss_pred             ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc
Confidence            999998887544  55567777777777788853  34689999999999999999999999999999999999999999


Q ss_pred             CCc-EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         256 DGT-VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       256 dg~-i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      .|+ ||||.+.+|+.+..|+.-. ....|.+++|+|++ .+|.+.+..++|++|.+.
T Consensus       194 KGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  194 KGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDS-QFLAASSNTETVHIFKLE  248 (391)
T ss_pred             CceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCC-CeEEEecCCCeEEEEEec
Confidence            987 7999999999999887422 25678999999999 799999999999999874

>KOG1524|consensus

Probab=99.80  E-value=4.1e-18  Score=151.13  Aligned_cols=208  Identities=19%  Similarity=0.342  Sum_probs=162.7

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA  191 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  191 (482)
                      ...|+.++.||.+.|.+ +.++....+        ..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-....+ ..
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv--------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl-~Q  143 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSI--------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTV-VQ  143 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhh--------hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHH-hh
Confidence            35788888999999987 344443333        34678999999999999999999999999998 455433333 45


Q ss_pred             cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q psy8448         192 HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS  271 (482)
Q Consensus       192 ~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  271 (482)
                      ...+|.|++|.|+...++.+. .+.+.|=-+.....+-..+.|.+-|.++.|++..+.+++|+.|-..++||-. |..+.
T Consensus       144 ~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf  221 (737)
T KOG1524|consen  144 NEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLF  221 (737)
T ss_pred             cCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Ccccc
Confidence            678899999999887776654 5667777777777777889999999999999999999999999999999965 33333


Q ss_pred             eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448         272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV  351 (482)
Q Consensus       272 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~i  351 (482)
                      .-.   .|+.+|++++|.|+  ..++.++.. +++           +...  ..+.|..++|++||..+++|+..|.+.+
T Consensus       222 ~S~---~~ey~ITSva~npd--~~~~v~S~n-t~R-----------~~~p--~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  222 TSA---AEEYAITSVAFNPE--KDYLLWSYN-TAR-----------FSSP--RVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             cCC---hhccceeeeeeccc--cceeeeeee-eee-----------ecCC--CccceEEEEEcCCCceeeccccCceEEE
Confidence            333   88999999999998  466665532 333           2222  2678999999999999999999988764

>KOG0771|consensus

Probab=99.78  E-value=9e-18  Score=145.02  Aligned_cols=195  Identities=20%  Similarity=0.291  Sum_probs=150.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe
Q psy8448         104 ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ  183 (482)
Q Consensus       104 ~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  183 (482)
                      .+++|+.+|..|++|+.||++|||+..+...+....        .|...|.++.|+|||+.|++.+.| ..+||+.+++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence            789999999999999999999999977655433322        357899999999999999999999 99999999997


Q ss_pred             EeEEee-cccCCCeEEEEEccCC---CEE--EEEECCCeEEEEeCCCCce-----EEEeeccccceeEEEEcCCCCEEEE
Q psy8448         184 CLRKLE-KAHSLGVTCIQFSRDN---SQI--LTASFDTYVRIHGLKSGKM-----LKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       184 ~~~~~~-~~~~~~v~~i~~~~~~---~~l--~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      .+.... .........+.|+.++   .+.  +.....+.|+.||+....-     ..+...-...|.+++.+++|++++.
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            766653 2334456777887766   222  2333445677766543221     1111122346999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                      |+.||.|.|++..+.+.....+.  .|...|+.+.|+|+. +.++..+.+....+..+
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKL  353 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeehh--hheeeeeeEEEcCCc-CcccccccCCceeEEEE
Confidence            99999999999998887777665  788999999999998 78888888888888766

>KOG1310|consensus

Probab=99.77  E-value=1.4e-17  Score=148.16  Aligned_cols=216  Identities=19%  Similarity=0.319  Sum_probs=168.8

Q ss_pred             ccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEE
Q psy8448         141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVR  218 (482)
Q Consensus       141 ~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~  218 (482)
                      .....+.||++.|+++.|+.+|.+|++|+.|-.+.|||....+.+..+..+|...|.++.|-|  ++..+++|..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            344577889999999999999999999999999999999999999999999999999999999  567889999999999


Q ss_pred             EEeCCCC----------ceEEEeeccccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCce-------eeeeeccCCCc
Q psy8448         219 IHGLKSG----------KMLKEFRGHSSFVNDITFTADG-HSVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASD  280 (482)
Q Consensus       219 i~d~~~~----------~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~  280 (482)
                      ++|+...          +....+..|...|..++-.|++ +.+.+++.||+|+-||++....       ...+......-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            9999742          2344556788999999999988 7889999999999999987321       11111111223


Q ss_pred             cceeEEEEcCCCCCEEEEEeCCCeEEEEEcC---------Cc----------EEEEecCCcc-c-----C---cCEEEEE
Q psy8448         281 IAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ---------GQ----------IVRSLSSGKR-E-----G---GDFLCCT  332 (482)
Q Consensus       281 ~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~---------~~----------~~~~~~~~~~-~-----~---~~v~~~~  332 (482)
                      -...+++++|..+.+|++|+.|...++||.+         +.          .+..+...+. .     .   ..++-+.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            4567999999999999999999999999942         11          1222221111 0     1   1245688


Q ss_pred             EcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         333 TSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       333 ~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      |+|+|.-|+..-....|+++++..
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecC
Confidence            999999988888888899887763

>KOG1963|consensus

Probab=99.77  E-value=3.5e-16  Score=147.24  Aligned_cols=235  Identities=14%  Similarity=0.199  Sum_probs=174.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT-  181 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-  181 (482)
                      -.++.+++.|.+.+..-. ..+.+|+..++. ..   ......-..|.-.+++.+++|++++++++..||.|.+|.--. 
T Consensus       163 ~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~-~~---~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~  237 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHT-KH---TSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS  237 (792)
T ss_pred             CccEEEcCCceEEEEEEe-eeEEEEEecccc-ee---eccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc
Confidence            456788888877776654 458999988755 11   111222334667799999999999999999999999996322 


Q ss_pred             --CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcE
Q psy8448         182 --GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV  259 (482)
Q Consensus       182 --~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i  259 (482)
                        .....++..-|...|.+++|+++|.+|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+....|+.|
T Consensus       238 ~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI  316 (792)
T KOG1963|consen  238 SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQI  316 (792)
T ss_pred             ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence              122233336788999999999999999999999999999999998 44455678899999999999999999999999


Q ss_pred             EEEECCCCceeeeeeccCCC--------ccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCC---c-----
Q psy8448         260 KMWNLKTTECTSTFKSLGAS--------DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSG---K-----  322 (482)
Q Consensus       260 ~i~d~~~~~~~~~~~~~~~~--------~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~---~-----  322 (482)
                      .+....+.+...++..+...        ..-.+.++++|.. +.++..+..+.|.+||+ +...+..+...   .     
T Consensus       317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~  395 (792)
T KOG1963|consen  317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDV  395 (792)
T ss_pred             EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcc
Confidence            99988665554444332222        3446778888854 67888999999999999 55444444321   0     


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEe
Q psy8448         323 REGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      .....++.++.+..|.++++.-
T Consensus       396 n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  396 NIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             eeEEeeeeehhhccceEEEEee
Confidence            1233567778888899998764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=1.2e-16  Score=151.10  Aligned_cols=209  Identities=19%  Similarity=0.157  Sum_probs=140.8

Q ss_pred             CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEeEEeecccCCCeE
Q psy8448         121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---GKVKIWKIATGQCLRKLEKAHSLGVT  197 (482)
Q Consensus       121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~  197 (482)
                      +..|.+||...... ..+        ..|...+...+|+|+|+.|+.++.+   ..|++||+.+++.....  .......
T Consensus       183 ~~~i~i~d~dg~~~-~~l--------t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~  251 (429)
T PRK01742        183 PYEVRVADYDGFNQ-FIV--------NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNG  251 (429)
T ss_pred             eEEEEEECCCCCCc-eEe--------ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccC
Confidence            46899999865442 222        2235679999999999999988754   36999999887543221  1222345


Q ss_pred             EEEEccCCCEEEEEE-CCCeEE--EEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCc-eeee
Q psy8448         198 CIQFSRDNSQILTAS-FDTYVR--IHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTE-CTST  272 (482)
Q Consensus       198 ~i~~~~~~~~l~~~~-~dg~i~--i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~  272 (482)
                      .++|+|||+.|+.+. .+|.+.  +||+.+++. ..+..+...+....|+|||+.|+.++ .+|...||++.... ....
T Consensus       252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~  330 (429)
T PRK01742        252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL  330 (429)
T ss_pred             ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence            789999999888764 577554  557666654 45555677788999999999877655 57888888765422 2222


Q ss_pred             eeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       273 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      +    .+..  ....|+|++ +.++..+.++ +.+||+.......+....    ....+.|+|||++|+.++.++...+|
T Consensus       331 l----~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l  398 (429)
T PRK01742        331 V----GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTEVLSSTF----LDESPSISPNGIMIIYSSTQGLGKVL  398 (429)
T ss_pred             e----cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeEEecCCC----CCCCceECCCCCEEEEEEcCCCceEE
Confidence            2    2222  357899999 6666666654 556898533333333221    22467899999999999999988855


Q ss_pred             e
Q psy8448         353 L  353 (482)
Q Consensus       353 ~  353 (482)
                      .
T Consensus       399 ~  399 (429)
T PRK01742        399 Q  399 (429)
T ss_pred             E
Confidence            3

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=8.9e-17  Score=152.01  Aligned_cols=217  Identities=18%  Similarity=0.197  Sum_probs=151.5

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CC
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVD---GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QS  171 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~d  171 (482)
                      +..|...+.+.+|||||+.|+..+.+   ..|++||+.+++.......         ......++|+|||+.|+.++ .+
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~---------~g~~~~~~wSPDG~~La~~~~~~  269 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF---------RGHNGAPAFSPDGSRLAFASSKD  269 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC---------CCccCceeECCCCCEEEEEEecC
Confidence            34678889999999999999987643   4799999988764322111         12234689999999888865 67


Q ss_pred             CcEEEE--EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCC-ceEEEeeccccceeEEEEcCCC
Q psy8448         172 GKVKIW--KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       172 g~i~iw--d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      |.+.||  |+.++.. ..+ ..+...+....|+|+|+.|+.++ .++...+|++... .....+ .+..  .+..|+|+|
T Consensus       270 g~~~Iy~~d~~~~~~-~~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG  344 (429)
T PRK01742        270 GVLNIYVMGANGGTP-SQL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADG  344 (429)
T ss_pred             CcEEEEEEECCCCCe-Eee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCC
Confidence            766555  6655553 444 34566788999999999877655 5677788876432 222222 3333  457899999


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc---CCcEEEEecCCccc
Q psy8448         248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM---QGQIVRSLSSGKRE  324 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~  324 (482)
                      ++|+..+.++ +.+||+.+++......   .  .....+.|+|++ ++++.++.++...+|++   +|+....+..+   
T Consensus       345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~--~~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~---  414 (429)
T PRK01742        345 KTLVMINGDN-VVKQDLTSGSTEVLSS---T--FLDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGRFKARLPGS---  414 (429)
T ss_pred             CEEEEEcCCC-EEEEECCCCCeEEecC---C--CCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCceEEccCC---
Confidence            9998887765 6669999887543222   1  123567899999 78888888887776654   68888878654   


Q ss_pred             CcCEEEEEEcCC
Q psy8448         325 GGDFLCCTTSPR  336 (482)
Q Consensus       325 ~~~v~~~~~~~~  336 (482)
                      .+.+...+|+|-
T Consensus       415 ~g~~~~p~wsp~  426 (429)
T PRK01742        415 DGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCcccCCC
Confidence            556778899874

>KOG2139|consensus

Probab=99.75  E-value=1.6e-15  Score=128.47  Aligned_cols=287  Identities=18%  Similarity=0.211  Sum_probs=179.2

Q ss_pred             hHhhhhhccCCCCCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCC
Q psy8448          53 QALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTT  131 (482)
Q Consensus        53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~  131 (482)
                      +++.|++|.-.++.+.    .++.+.+++... ..|..+.    ......|+|++|-| .++.|+.|+..| |.||....
T Consensus       102 r~~aWhqH~~~fava~----nddvVriy~kss-t~pt~Lk----s~sQrnvtclawRPlsaselavgCr~g-IciW~~s~  171 (445)
T KOG2139|consen  102 RGVAWHQHIIAFAVAT----NDDVVRIYDKSS-TCPTKLK----SVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSR  171 (445)
T ss_pred             eeEeechhhhhhhhhc----cCcEEEEeccCC-CCCceec----chhhcceeEEEeccCCcceeeeeecce-eEEEEcCc
Confidence            3456776554443333    255555655544 3333332    24467899999999 567888888765 99998653


Q ss_pred             Cceeec----cccccc--cccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccC
Q psy8448         132 GKIRKD----LKYQAQ--DNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD  204 (482)
Q Consensus       132 ~~~~~~----~~~~~~--~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  204 (482)
                      .-....    ...+..  -.-.+| .+|++|.|++||..+++++ .|..|.|||..++..+... ....+.+.-+.|+||
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPd  249 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPD  249 (445)
T ss_pred             ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCC
Confidence            211111    011110  111233 7899999999999999988 5678999999988776654 345667899999999


Q ss_pred             CCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce---------------
Q psy8448         205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC---------------  269 (482)
Q Consensus       205 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------  269 (482)
                      +.+|++++-|+..++|............-..+.|...+|+|+|+.|+.+.. |.-++|.+.....               
T Consensus       250 gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ll  328 (445)
T KOG2139|consen  250 GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLL  328 (445)
T ss_pred             CCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeee
Confidence            999999999999999965433222222223458999999999998776543 3334554422110               


Q ss_pred             eeeeec------cCCCccceeEEEEcCCCCCEEEEEeCCC--------eEEEEEcCCcEEEEec--CCcccCcCEEEEEE
Q psy8448         270 TSTFKS------LGASDIAVNSIHLLPKNTEHFVVCNKTN--------TVVIMNMQGQIVRSLS--SGKREGGDFLCCTT  333 (482)
Q Consensus       270 ~~~~~~------~~~~~~~v~~i~~~~~~~~~l~~~~~d~--------~i~i~d~~~~~~~~~~--~~~~~~~~v~~~~~  333 (482)
                      +..+..      ..-..+...+++|.|.| .++++.-..+        .|.+||....+...+.  +... ......++|
T Consensus       329 iaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~-ge~P~~IsF  406 (445)
T KOG2139|consen  329 IADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIG-GEYPAYISF  406 (445)
T ss_pred             eccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccccc-CCCCceEEe
Confidence            000000      00124577899999999 7777765543        3677887544433332  1111 112334555


Q ss_pred             cC---CCCEEEEEeCCcEEEEEee
Q psy8448         334 SP---RGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       334 ~~---~g~~l~~~~~dg~i~iw~~  354 (482)
                      +|   +|.+|..+=..|.+.-|.+
T Consensus       407 ~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  407 GPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             eecccCCcEEEEEeccCceEeeee
Confidence            54   5777777878888885544

>KOG4497|consensus

Probab=99.74  E-value=9e-16  Score=128.40  Aligned_cols=188  Identities=18%  Similarity=0.292  Sum_probs=135.5

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCe
Q psy8448         105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGKVKIWKIATGQ  183 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~  183 (482)
                      -++|||+|+++|+++. ..+.|-|.++-+..+.+..-         +.|.-+.|..+.-+++. ...++.|.+|++...+
T Consensus        13 ~c~fSp~g~yiAs~~~-yrlviRd~~tlq~~qlf~cl---------dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe   82 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSR-YRLVIRDSETLQLHQLFLCL---------DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE   82 (447)
T ss_pred             ceeECCCCCeeeeeee-eEEEEeccchhhHHHHHHHH---------HHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence            4679999999999985 48999998887766555432         46888999988776555 4678899999999999


Q ss_pred             EeEEeecccCCCeEEEEEccCCCEE-EEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC------
Q psy8448         184 CLRKLEKAHSLGVTCIQFSRDNSQI-LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD------  256 (482)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d------  256 (482)
                      -..++ .....++.++.|+|+|+.| .+...+-.|.+|.+.+.+.... .-.+..+..++|+|||++.+..+.-      
T Consensus        83 w~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv  160 (447)
T KOG4497|consen   83 WYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYV  160 (447)
T ss_pred             eEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHH
Confidence            88888 5677889999999999655 5667788999999987765432 2234456778888888876655431      


Q ss_pred             ------------------------------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         257 ------------------------------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       257 ------------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                                                    ..+.+||.--.-.+..+    ...-.+..+.|+|.+ +++++|+.|+.++
T Consensus       161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY----e~~lG~k~v~wsP~~-qflavGsyD~~lr  235 (447)
T KOG4497|consen  161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY----ERGLGLKFVEWSPCN-QFLAVGSYDQMLR  235 (447)
T ss_pred             HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee----eeccceeEEEecccc-ceEEeeccchhhh
Confidence                                          12333332111111111    123467889999988 8999999999887


Q ss_pred             EEE
Q psy8448         307 IMN  309 (482)
Q Consensus       307 i~d  309 (482)
                      +.+
T Consensus       236 vln  238 (447)
T KOG4497|consen  236 VLN  238 (447)
T ss_pred             hhc
Confidence            754

>KOG2111|consensus

Probab=99.74  E-value=1.5e-14  Score=120.78  Aligned_cols=236  Identities=17%  Similarity=0.299  Sum_probs=166.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCC------CcE
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQS------GKV  174 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~d------g~i  174 (482)
                      ....++|+.|..-++.|..+| .+||+.+--+..........      .-.+.-|-|  ..++|+.. +.+      ..+
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~------G~~~veMLf--R~N~laLVGGg~~pky~pNkv   77 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG------GFKIVEMLF--RSNYLALVGGGSRPKYPPNKV   77 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccC------chhhhhHhh--hhceEEEecCCCCCCCCCceE
Confidence            345599999999999998777 99999875332221111110      011222222  23455543 322      479


Q ss_pred             EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC-CCceEEEeecc--ccceeEEEEcCCCCEEE
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK-SGKMLKEFRGH--SSFVNDITFTADGHSVL  251 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~--~~~i~~l~~~~~~~~l~  251 (482)
                      .|||=...+++..+  ....+|.++.+.++  .|++.- .+.|++|... +.+.+..+...  .....+++-..+..+|+
T Consensus        78 iIWDD~k~~~i~el--~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La  152 (346)
T KOG2111|consen   78 IIWDDLKERCIIEL--SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA  152 (346)
T ss_pred             EEEecccCcEEEEE--EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence            99996666677666  37788999999765  566665 7789999987 45555555422  22244444333444444


Q ss_pred             E-EeCCCcEEEEECCCCce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCe-EEEEEc-CCcEEEEecCCcccCc
Q psy8448         252 S-ASSDGTVKMWNLKTTEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT-VVIMNM-QGQIVRSLSSGKREGG  326 (482)
Q Consensus       252 ~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-i~i~d~-~~~~~~~~~~~~~~~~  326 (482)
                      . |-.-|.|+|-|+...+.  ...+.   .|...|.+++.+.+| .++++++..|+ |+|||. +|..+..+..+.. ..
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~---AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-~A  227 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIIN---AHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGVD-RA  227 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEE---cccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-hh
Confidence            4 44568999999987654  24444   999999999999999 89999999987 799999 7899999887754 57


Q ss_pred             CEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         327 DFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       327 ~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      .|.+++|+|+..+|+++|+.|++.|+.++.
T Consensus       228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            899999999999999999999999776653

>KOG1523|consensus

Probab=99.74  E-value=1.3e-16  Score=132.99  Aligned_cols=161  Identities=14%  Similarity=0.150  Sum_probs=130.6

Q ss_pred             cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc---eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy8448         192 HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK---MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE  268 (482)
Q Consensus       192 ~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~  268 (482)
                      ...+|+|.+|++|...++++.....|.||.....+   ...++..|...|++++|+|..+.|++++.|..-++|....+.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            45789999999999999999999999999887654   677888999999999999999999999999999999994433


Q ss_pred             eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEec--CCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         269 CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS--SGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       269 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      .-.....+..++...+++.|+|.+ +.|++|+....|.+|-++++.---..  ..+.....|+++.|+|++-+|++|+.|
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence            222111222678899999999998 89999999999999988543322111  122236789999999999999999999


Q ss_pred             cEEEEEe
Q psy8448         347 MVLVVRL  353 (482)
Q Consensus       347 g~i~iw~  353 (482)
                      +..+++.
T Consensus       168 ~k~rVfS  174 (361)
T KOG1523|consen  168 GKCRVFS  174 (361)
T ss_pred             cceeEEE
Confidence            9999654

>KOG4497|consensus

Probab=99.74  E-value=8.8e-16  Score=128.45  Aligned_cols=269  Identities=16%  Similarity=0.263  Sum_probs=183.8

Q ss_pred             hhhhhccCCCCCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCc
Q psy8448          55 LKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGK  133 (482)
Q Consensus        55 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~  133 (482)
                      ++|.-..++...+   ++-++.+.+|+..++..-.++.     .-..++.+++|||||+.+ .+...+-.|.+|.+.+.+
T Consensus        54 ieW~ads~~ilC~---~yk~~~vqvwsl~Qpew~ckId-----eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~  125 (447)
T KOG4497|consen   54 IEWKADSCHILCV---AYKDPKVQVWSLVQPEWYCKID-----EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK  125 (447)
T ss_pred             eeeeccceeeeee---eeccceEEEEEeecceeEEEec-----cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence            4565555444433   3456788899887665544333     446789999999999655 566678899999998876


Q ss_pred             eeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC------------------------------------cEEEE
Q psy8448         134 IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG------------------------------------KVKIW  177 (482)
Q Consensus       134 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg------------------------------------~i~iw  177 (482)
                      ....-..         ...+..++|+|+|++.+.++.-.                                    .+.+|
T Consensus       126 ~~~~~~p---------K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw  196 (447)
T KOG4497|consen  126 GYLLPHP---------KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW  196 (447)
T ss_pred             eEEeccc---------ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe
Confidence            5432211         24567788888888777665321                                    13334


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE-----------------------------
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML-----------------------------  228 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------  228 (482)
                      |---.-.+..+  ...-++..++|+|.+++|++|+.|+.+++.+--+.+..                             
T Consensus       197 d~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~  274 (447)
T KOG4497|consen  197 DNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLH  274 (447)
T ss_pred             cchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcc
Confidence            32111112222  23457899999999999999999999888543211100                             


Q ss_pred             -------------------------------EEee------ccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCce
Q psy8448         229 -------------------------------KEFR------GHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTEC  269 (482)
Q Consensus       229 -------------------------------~~~~------~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~  269 (482)
                                                     ..++      .....+.-++|++|..++++-.+  -+.+-+||+++.+.
T Consensus       275 ~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l  354 (447)
T KOG4497|consen  275 HCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL  354 (447)
T ss_pred             cccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh
Confidence                                           0111      12234667899999998887654  35699999998776


Q ss_pred             eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE
Q psy8448         270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL  349 (482)
Q Consensus       270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i  349 (482)
                      ...+    ....+|....|.|.. ..++.+.....+++|...|.........   ...|..+.|.-+|..++..+.|..-
T Consensus       355 ~avL----iQk~piraf~WdP~~-prL~vctg~srLY~W~psg~~~V~vP~~---GF~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  355 HAVL----IQKHPIRAFEWDPGR-PRLVVCTGKSRLYFWAPSGPRVVGVPKK---GFNIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             hhhh----hhccceeEEEeCCCC-ceEEEEcCCceEEEEcCCCceEEecCCC---CceeeeEEecCCCcEEEEEcCCceE
Confidence            5555    557799999999988 5677777777899999988555444433   5789999999999999999998765


Q ss_pred             E
Q psy8448         350 V  350 (482)
Q Consensus       350 ~  350 (482)
                      .
T Consensus       427 ~  427 (447)
T KOG4497|consen  427 V  427 (447)
T ss_pred             E
Confidence            4

>KOG0644|consensus

Probab=99.74  E-value=2.3e-18  Score=160.33  Aligned_cols=163  Identities=25%  Similarity=0.423  Sum_probs=135.6

Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG  221 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d  221 (482)
                      ....+.+|.+.|+|+.|...|.++++|+.|..++||.++++.++... .+|.+.|+.++.+.++.++++++.|..|++|.
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            34567789999999999999999999999999999999999999999 79999999999999999999999999999999


Q ss_pred             CCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC-CCccceeEEEEcCCCCCEEEEEe
Q psy8448         222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG-ASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      +.++.++..+.+|++.|++++|+|-.    +.+.||++++||.+-.-.+..-.... ....-+.++.|...+ .-+++++
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~-~~f~Tgs  335 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG-DRFLTGS  335 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccc-ccccccc
Confidence            99999999999999999999999954    77889999999998211111111111 223445566666666 6788888


Q ss_pred             CCCeEEEEEc
Q psy8448         301 KTNTVVIMNM  310 (482)
Q Consensus       301 ~d~~i~i~d~  310 (482)
                      .|+.-..|.+
T Consensus       336 ~d~ea~n~e~  345 (1113)
T KOG0644|consen  336 RDGEARNHEF  345 (1113)
T ss_pred             CCcccccchh
Confidence            8888777765

>KOG2139|consensus

Probab=99.73  E-value=1.3e-15  Score=129.11  Aligned_cols=237  Identities=16%  Similarity=0.271  Sum_probs=167.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQSGKVKIWK  178 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd  178 (482)
                      .-.+..++|++.-.-+|++..|-.|++||-+. +....++...       +..|+|++|-|. +..|+.|+.. -|.+|.
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s-------QrnvtclawRPlsaselavgCr~-gIciW~  168 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS-------QRNVTCLAWRPLSASELAVGCRA-GICIWS  168 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh-------hcceeEEEeccCCcceeeeeecc-eeEEEE
Confidence            45688899999766788899999999999766 4444444332       467999999994 4567777765 589997


Q ss_pred             cCCC----e--------EeEEeecccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCceEEEeeccccceeEEEEcC
Q psy8448         179 IATG----Q--------CLRKLEKAHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA  245 (482)
Q Consensus       179 ~~~~----~--------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~  245 (482)
                      ....    .        ....+......+|++++|++||..+++++. |..|.|||..++..+.......+.+.-+.|+|
T Consensus       169 ~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP  248 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP  248 (445)
T ss_pred             cCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence            5421    1        111222223368999999999999998875 46899999999887655544566788999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEE--------
Q psy8448         246 DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRS--------  317 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------  317 (482)
                      |+.+|++++-|+..++|+...........   ...+.|....|+|.|..+|++++....++-....++....        
T Consensus       249 dgd~lfaAt~davfrlw~e~q~wt~erw~---lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~  325 (445)
T KOG2139|consen  249 DGDVLFAATCDAVFRLWQENQSWTKERWI---LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKR  325 (445)
T ss_pred             CCCEEEEecccceeeeehhcccceeccee---ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCccccee
Confidence            99999999999999999655433222332   2344899999999998778887776655544332221110        


Q ss_pred             ------ec------CCcccCcCEEEEEEcCCCCEEEEEeCCcE
Q psy8448         318 ------LS------SGKREGGDFLCCTTSPRGEWIYCVGEDMV  348 (482)
Q Consensus       318 ------~~------~~~~~~~~v~~~~~~~~g~~l~~~~~dg~  348 (482)
                            +.      ....-.++..+++|+|.|.+|++.-..+.
T Consensus       326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence                  00      11112467789999999999998765544

>KOG2321|consensus

Probab=99.73  E-value=8.3e-16  Score=137.82  Aligned_cols=253  Identities=15%  Similarity=0.239  Sum_probs=189.9

Q ss_pred             CCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeeccccc--------------------cccccccc-------
Q psy8448          98 GSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQ--------------------AQDNFMLM-------  149 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~--------------------~~~~~~~h-------  149 (482)
                      +|...-+.|..+|||+|+ |+|..--.|++||+.+-.+...-...                    ......-|       
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            677888999999999997 56677889999998764322110000                    00000001       


Q ss_pred             ----cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC
Q psy8448         150 ----EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG  225 (482)
Q Consensus       150 ----~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  225 (482)
                          ...-..|+++.-..-|+.++....|+-++++.|..+..+ ....+.++++..++-..+|++|+.+|.|..||.++.
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccc-ccccccceeeeecCccceEEecccCceEEEecchhh
Confidence                122334555543333555555668999999999999888 456688999999999899999999999999999988


Q ss_pred             ceEEEeec------ccc-----ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCC
Q psy8448         226 KMLKEFRG------HSS-----FVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTE  294 (482)
Q Consensus       226 ~~~~~~~~------~~~-----~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  294 (482)
                      ..+..+..      |.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-..  ....+|..+.|.+.+..
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--~~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--GYELPIKKLDWQDTDQQ  285 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--CCccceeeecccccCCC
Confidence            76665532      333     399999999999999999999999999999887655432  55678999999887655


Q ss_pred             EEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhh
Q psy8448         295 HFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       295 ~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                      --++......++|||- +|+....+..    ...+..+++-|++.+++++-+++.+..|-++..
T Consensus       286 ~~v~S~Dk~~~kiWd~~~Gk~~asiEp----t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  286 NKVVSMDKRILKIWDECTGKPMASIEP----TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             ceEEecchHHhhhcccccCCceeeccc----cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence            5566666778999999 7888777765    556899999999999999999999988876633

>KOG1272|consensus

Probab=99.72  E-value=3.1e-17  Score=143.10  Aligned_cols=230  Identities=14%  Similarity=0.236  Sum_probs=192.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ...-..+.++.+|..|+.|+..|.|-.+|..++++...+...         ..|..+.|-.+.+++|++- ...+.||| 
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-  197 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------ETVRDVTFLHNEQFFAVAQ-KKYVYVYD-  197 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh---------hhhhhhhhhcchHHHHhhh-hceEEEec-
Confidence            345677899999999999999999999999999988777654         5799999998888887774 56899999 


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcE
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV  259 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i  259 (482)
                      ..|..+..+.  ....|..+.|-|..-+|++++..|.+..-|+.+|+.+..+..-.+.+..|+-+|-+..+-+|...|+|
T Consensus       198 ~~GtElHClk--~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtV  275 (545)
T KOG1272|consen  198 NNGTELHCLK--RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTV  275 (545)
T ss_pred             CCCcEEeehh--hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceE
Confidence            5677777773  34568999999998889999999999999999999999999888999999999999999999999999


Q ss_pred             EEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cEEEEecCCcccCcCEEEEEEcCCCC
Q psy8448         260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG-QIVRSLSSGKREGGDFLCCTTSPRGE  338 (482)
Q Consensus       260 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~g~  338 (482)
                      .+|.....+++..+.   .|.++|.+|++.++| .++++++.|..++|||++. ..+.++..    ..+...+++|..| 
T Consensus       276 SlWSP~skePLvKiL---cH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~Sqkg-  346 (545)
T KOG1272|consen  276 SLWSPNSKEPLVKIL---CHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQKG-  346 (545)
T ss_pred             EecCCCCcchHHHHH---hcCCCcceEEECCCC-cEEeecccccceeEeeeccccccceeec----CCCcccccccccc-
Confidence            999999988877776   899999999999999 8999999999999999953 33444433    3455678887655 


Q ss_pred             EEEEEeCCcEEEEE
Q psy8448         339 WIYCVGEDMVLVVR  352 (482)
Q Consensus       339 ~l~~~~~dg~i~iw  352 (482)
                       +++.+....+.||
T Consensus       347 -lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  347 -LLALSYGDHVQIW  359 (545)
T ss_pred             -ceeeecCCeeeee
Confidence             4445566677755

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=6.8e-15  Score=138.85  Aligned_cols=217  Identities=17%  Similarity=0.207  Sum_probs=151.5

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCC-
Q psy8448          98 GSKSHVECARFSPDGQYLITGS---VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSG-  172 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg-  172 (482)
                      .+...+.+.+|||||+.|+..+   .+..|.+|++.+++.......         ...+..+.|+|||+.|+.. +.+| 
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---------~~~~~~~~~SPDG~~La~~~~~~g~  266 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---------PRHNGAPAFSPDGSKLAFALSKTGS  266 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC---------CCCcCCeEECCCCCEEEEEEcCCCC
Confidence            4567899999999999998754   245799999988764432222         1234568999999988865 3444 


Q ss_pred             -cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-C--eEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         173 -KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-T--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       173 -~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                       .|.+||+.+++.....  .+...+....|+|+|+.|+..+.+ +  .|+++|+.+++. ..+...........|+|||+
T Consensus       267 ~~I~~~d~~tg~~~~lt--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~  343 (429)
T PRK03629        267 LNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK  343 (429)
T ss_pred             cEEEEEECCCCCEEEcc--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCC
Confidence             5889999887654433  334567889999999988877654 3  566667776654 33343444566789999999


Q ss_pred             EEEEEeCC---CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC---eEEEEEcCCcEEEEecCCc
Q psy8448         249 SVLSASSD---GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN---TVVIMNMQGQIVRSLSSGK  322 (482)
Q Consensus       249 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~  322 (482)
                      +|+..+.+   ..|.+||+.+++.. .+.   . ........|+|+| ..++.++.++   .+.+++++|.....+..+ 
T Consensus       344 ~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt---~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~-  416 (429)
T PRK03629        344 FMVMVSSNGGQQHIAKQDLATGGVQ-VLT---D-TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARLPAT-  416 (429)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-EeC---C-CCCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEECccC-
Confidence            99876643   35888999887643 332   1 1123467899999 6666666554   367788888887777654 


Q ss_pred             ccCcCEEEEEEcC
Q psy8448         323 REGGDFLCCTTSP  335 (482)
Q Consensus       323 ~~~~~v~~~~~~~  335 (482)
                        .+.+...+|+|
T Consensus       417 --~~~~~~p~Wsp  427 (429)
T PRK03629        417 --DGQVKFPAWSP  427 (429)
T ss_pred             --CCCcCCcccCC
Confidence              55677788887

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.4e-14  Score=136.71  Aligned_cols=208  Identities=15%  Similarity=0.102  Sum_probs=139.2

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeEeEEeecccCCCeEE
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---SGKVKIWKIATGQCLRKLEKAHSLGVTC  198 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~  198 (482)
                      ..|.++|........ +..        +...+...+|+|||+.|+..+.   +..+.+|++.+++.....  .....+..
T Consensus       179 ~~l~~~d~dg~~~~~-lt~--------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~  247 (429)
T PRK03629        179 YELRVSDYDGYNQFV-VHR--------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGA  247 (429)
T ss_pred             eeEEEEcCCCCCCEE-eec--------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCC
Confidence            368888877544322 111        2467899999999999987652   457999999887643322  23334557


Q ss_pred             EEEccCCCEEEEE-ECCC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCceeee
Q psy8448         199 IQFSRDNSQILTA-SFDT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD-GT--VKMWNLKTTECTST  272 (482)
Q Consensus       199 i~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~  272 (482)
                      ++|+|||+.|+.. +.+|  .|++||+++++... +..+...+....|+|||+.|+..+.+ +.  |.++|+.+++.. .
T Consensus       248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~  325 (429)
T PRK03629        248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R  325 (429)
T ss_pred             eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E
Confidence            8999999988865 3344  59999998877544 33345567889999999988877654 44  555577666543 3


Q ss_pred             eeccCCCccceeEEEEcCCCCCEEEEEe-CC--CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE
Q psy8448         273 FKSLGASDIAVNSIHLLPKNTEHFVVCN-KT--NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL  349 (482)
Q Consensus       273 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i  349 (482)
                      +.   ..........|+|+| +.++..+ .+  ..|.+||+.+.....+...    .......|+|||++|+.++.++..
T Consensus       326 lt---~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~----~~~~~p~~SpDG~~i~~~s~~~~~  397 (429)
T PRK03629        326 IT---WEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQVLTDT----FLDETPSIAPNGTMVIYSSSQGMG  397 (429)
T ss_pred             ee---cCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeEEeCCC----CCCCCceECCCCCEEEEEEcCCCc
Confidence            32   223345678899999 5555443 33  3588889855445555432    123467899999999998887653


Q ss_pred             E
Q psy8448         350 V  350 (482)
Q Consensus       350 ~  350 (482)
                      .
T Consensus       398 ~  398 (429)
T PRK03629        398 S  398 (429)
T ss_pred             e
Confidence            3

>KOG2394|consensus

Probab=99.71  E-value=3.5e-16  Score=139.10  Aligned_cols=174  Identities=15%  Similarity=0.273  Sum_probs=135.1

Q ss_pred             cCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCC------
Q psy8448         109 SPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKIAT------  181 (482)
Q Consensus       109 s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~------  181 (482)
                      .|++--|+.|-..|.|.+.|....+....+......    .+..|+|+.|-| +...++++-.+|.+.+||..-      
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i----~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~  257 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLI----NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA  257 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccc----cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence            345666777888899999987763332222222111    247899999999 445666777899999997531      


Q ss_pred             --------Ce--------------EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecccccee
Q psy8448         182 --------GQ--------------CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVN  239 (482)
Q Consensus       182 --------~~--------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  239 (482)
                              +.              ++..+ ......|...+|+|||++||+.+.||.++|+|..+.+.+..++..-+...
T Consensus       258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL  336 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILTSKSKKTRNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL  336 (636)
T ss_pred             CcccccCCCCeeEEeeeeccccCCcccee-EeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE
Confidence                    11              11111 12334788999999999999999999999999999988888887788899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC
Q psy8448         240 DITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP  290 (482)
Q Consensus       240 ~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~  290 (482)
                      |++|+|||++|++|++|..|.||.+..++.+..=+   +|+..|..++|.|
T Consensus       337 CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq---GHkSWVs~VaFDp  384 (636)
T KOG2394|consen  337 CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ---GHKSWVSVVAFDP  384 (636)
T ss_pred             EEEEcCCccEEEecCCcceEEEEEeccceEEEecc---ccccceeeEeecc
Confidence            99999999999999999999999999988887766   9999999999984

>KOG1334|consensus

Probab=99.69  E-value=4.1e-16  Score=137.07  Aligned_cols=211  Identities=19%  Similarity=0.257  Sum_probs=169.6

Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEE
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRI  219 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i  219 (482)
                      ....+..|.+.|..+.|+..|..|++|+.|..|.+||...++....+..+|...|....|-|  +...+++++.||.+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            34556778999999999999999999999999999999999999999899999999999988  4567999999999998


Q ss_pred             EeCCCCce---EEEeeccccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc---ceeEEEEcCCC
Q psy8448         220 HGLKSGKM---LKEFRGHSSFVNDITFTADG-HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI---AVNSIHLLPKN  292 (482)
Q Consensus       220 ~d~~~~~~---~~~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~  292 (482)
                      =.+.....   ...+..|.++|..++.-|+. ..|.+++.|+.+.-+|++...+...+.....+..   ....++..|..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            77654332   23455799999999999865 4688999999999999998876665554334444   67899999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCC---c----EEEEecCCc---ccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         293 TEHFVVCNKTNTVVIMNMQG---Q----IVRSLSSGK---REGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       293 ~~~l~~~~~d~~i~i~d~~~---~----~~~~~~~~~---~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      ...+++++.|-.+++||.+.   +    .+..+..++   .....|++++|+.++.-|.++..|-.|+++
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF  363 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF  363 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence            88999999999999999841   1    122332221   124678999999998888888999999943

>KOG1272|consensus

Probab=99.68  E-value=3.1e-17  Score=143.12  Aligned_cols=231  Identities=17%  Similarity=0.203  Sum_probs=186.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ...|.++.|-.+.+++|++- ...++||| ..|..++.+...         .+|..+.|-|..-+|++++..|.++.-|+
T Consensus       170 ~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~---------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DV  238 (545)
T KOG1272|consen  170 METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH---------IRVARLEFLPYHFLLVAASEAGFLKYQDV  238 (545)
T ss_pred             hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc---------CchhhhcccchhheeeecccCCceEEEee
Confidence            56788889988888888876 56799999 456666555543         57999999999989999999999999999


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcE
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV  259 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i  259 (482)
                      .+|+.+..+ ....+.+..++-+|-+..+-+|..+|+|.+|.....+++..+..|.++|.++++.++|+++++++.|..+
T Consensus       239 S~GklVa~~-~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~  317 (545)
T KOG1272|consen  239 STGKLVASI-RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKV  317 (545)
T ss_pred             chhhhhHHH-HccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccce
Confidence            999999888 4567788999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCc--EEEEecCCcccCcCEEEEEEcC
Q psy8448         260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQ--IVRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       260 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~--~~~~~~~~~~~~~~v~~~~~~~  335 (482)
                      +|||+++...+.++.   . ..+...++++..|   +++.+....+.+|.-  .+.  .-..+-.| ...+.|..+.|+|
T Consensus       318 kIWDlR~~~ql~t~~---t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H-~~~~~V~~l~FcP  389 (545)
T KOG1272|consen  318 KIWDLRNFYQLHTYR---T-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSGHGETPYMNH-RCGGPVEDLRFCP  389 (545)
T ss_pred             eEeeeccccccceee---c-CCCcccccccccc---ceeeecCCeeeeehhhhcCCCCCCcchhhh-ccCcccccceecc
Confidence            999999987666664   2 4567788888765   566666778999964  322  11122222 2356899999999


Q ss_pred             CCCEEEEEeCCcEEE
Q psy8448         336 RGEWIYCVGEDMVLV  350 (482)
Q Consensus       336 ~g~~l~~~~~dg~i~  350 (482)
                      -...|-.|-..|.--
T Consensus       390 ~EDvLGIGH~~G~ts  404 (545)
T KOG1272|consen  390 YEDVLGIGHAGGITS  404 (545)
T ss_pred             HHHeeeccccCCcee
Confidence            877777666655444

>KOG0322|consensus

Probab=99.68  E-value=1e-15  Score=124.12  Aligned_cols=258  Identities=14%  Similarity=0.153  Sum_probs=174.5

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      .|.+.+|....+.....+    ...|...|+.+.--|+ ..|.+-+.|+.+.+|++.-+..+..-           .-.+
T Consensus        34 ~G~V~~w~lqt~r~~~~~----r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~-----------Si~~   97 (323)
T KOG0322|consen   34 VGIVKMWVLQTERDLPLI----RLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIH-----------SIVV   97 (323)
T ss_pred             cceEEEEEeecCccchhh----hhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEe-----------eeec
Confidence            667788887665443322    2257888999999987 56888899999999999875543322           2234


Q ss_pred             EEEEEcCC-----C----CEEEEEeCCC-cEEEEEcCCCeEeEEee---cccCCCeEEEEEcc-CCC--EEEEEECCCeE
Q psy8448         154 MSLAYSRD-----S----EMLASGSQSG-KVKIWKIATGQCLRKLE---KAHSLGVTCIQFSR-DNS--QILTASFDTYV  217 (482)
Q Consensus       154 ~~l~~~~~-----~----~~l~~~~~dg-~i~iwd~~~~~~~~~~~---~~~~~~v~~i~~~~-~~~--~l~~~~~dg~i  217 (482)
                      +++.|.+.     +    ..++.-+... .+.+-|......+....   .+..+.+.|..+.. .++  .+++|.++|.+
T Consensus        98 nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghv  177 (323)
T KOG0322|consen   98 NSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHV  177 (323)
T ss_pred             cccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeE
Confidence            44444431     1    1111111100 12222222111111111   12344566766533 333  46678899999


Q ss_pred             EEEeCCCCce----------EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--ce--eeeeeccCCCccce
Q psy8448         218 RIHGLKSGKM----------LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT--EC--TSTFKSLGASDIAV  283 (482)
Q Consensus       218 ~i~d~~~~~~----------~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~--~~--~~~~~~~~~~~~~v  283 (482)
                      .+||+.++..          ......|..+|.++.+.+....=++|+.+..+..|++...  .+  ...+.   ..+-.|
T Consensus       178 v~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~---lknpGv  254 (323)
T KOG0322|consen  178 VIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT---LKNPGV  254 (323)
T ss_pred             EEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE---ecCCCc
Confidence            9999998733          3334568999999999987666678888888999988643  21  11111   334568


Q ss_pred             eEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         284 NSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       284 ~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ..+.+-||+ +++++++.|+.|++|.. +.+++..+..|   ...|.+++|+|+...+|+++.|++|-+|++
T Consensus       255 ~gvrIRpD~-KIlATAGWD~RiRVyswrtl~pLAVLkyH---sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  255 SGVRIRPDG-KILATAGWDHRIRVYSWRTLNPLAVLKYH---SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cceEEccCC-cEEeecccCCcEEEEEeccCCchhhhhhh---hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            889999999 99999999999999999 67888888776   688999999999999999999999998864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=1.6e-14  Score=119.95  Aligned_cols=158  Identities=17%  Similarity=0.318  Sum_probs=117.4

Q ss_pred             EEEEEEcCCCCEEEEEeC----------CCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEE--ECCCeEEE
Q psy8448         153 VMSLAYSRDSEMLASGSQ----------SGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTA--SFDTYVRI  219 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~~dg~i~i  219 (482)
                      -..+.|+|+|++|+.-..          -+...+|.++. +.....+.....++|.+++|+|+|+.+++.  ..++.|.+
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            356889999988776443          13455665532 233444433455679999999999987654  45679999


Q ss_pred             EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEE
Q psy8448         220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS---DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHF  296 (482)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  296 (482)
                      ||++ ++.+..+.  ...+..+.|+|+|++|++++.   .|.|.+||.++.+.+....    + ..+..++|+|+| +++
T Consensus        88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~-~~~t~~~WsPdG-r~~  158 (194)
T PF08662_consen   88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----H-SDATDVEWSPDG-RYL  158 (194)
T ss_pred             EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----c-CcEEEEEEcCCC-CEE
Confidence            9996 66666664  567789999999999999874   4679999999888777653    2 347899999999 677


Q ss_pred             EEEeC------CCeEEEEEcCCcEEEEec
Q psy8448         297 VVCNK------TNTVVIMNMQGQIVRSLS  319 (482)
Q Consensus       297 ~~~~~------d~~i~i~d~~~~~~~~~~  319 (482)
                      ++++.      |+.++||+..|+.+....
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~G~~l~~~~  187 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQGRLLYKKP  187 (194)
T ss_pred             EEEEeccceeccccEEEEEecCeEeEecc
Confidence            76653      788999999998877665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.1e-14  Score=135.73  Aligned_cols=219  Identities=22%  Similarity=0.222  Sum_probs=144.0

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCc
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVD---GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGK  173 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~  173 (482)
                      .+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.......         ...+...+|+|||+.|+. .+.+|.
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~---------~g~~~~~~~SPDG~~la~~~~~~g~  263 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF---------KGSNSAPAWSPDGRTLAVALSRDGN  263 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC---------CCCccceEECCCCCEEEEEEccCCC
Confidence            567889999999999999887643   4699999998865432211         234568899999998875 567777


Q ss_pred             EEEEE--cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-CCeEEEE--eCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         174 VKIWK--IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-DTYVRIH--GLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       174 i~iwd--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      ..+|.  +..+. ...+ ..+........|+|||+.|+..+. ++...+|  ++.+++.. .+..........+|+|+|+
T Consensus       264 ~~Iy~~d~~~~~-~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~  340 (427)
T PRK02889        264 SQIYTVNADGSG-LRRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGK  340 (427)
T ss_pred             ceEEEEECCCCC-cEEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCC
Confidence            66665  44443 4444 334445667899999998886654 3555555  55555432 2222233345678999999


Q ss_pred             EEEEEeCCC---cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCe--EEEEEcCCcEEEEecCCcc
Q psy8448         249 SVLSASSDG---TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT--VVIMNMQGQIVRSLSSGKR  323 (482)
Q Consensus       249 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~  323 (482)
                      +|+..+.++   .|.+||+.+++.....    . ......+.|+|++..++++....+.  +.+.+.++.....+...  
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt----~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~--  413 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLATGQVTALT----D-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQ--  413 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCCCCeEEcc----C-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecC--
Confidence            998877654   5999999887654322    1 1234678999999545555544443  55556667666656433  


Q ss_pred             cCcCEEEEEEcCC
Q psy8448         324 EGGDFLCCTTSPR  336 (482)
Q Consensus       324 ~~~~v~~~~~~~~  336 (482)
                       .+.+...+|+|-
T Consensus       414 -~g~~~~p~wsp~  425 (427)
T PRK02889        414 -GGDVREPSWGPF  425 (427)
T ss_pred             -CCCCCCCccCCC
Confidence             455666778763

>KOG2111|consensus

Probab=99.67  E-value=9.1e-15  Score=122.01  Aligned_cols=221  Identities=21%  Similarity=0.326  Sum_probs=152.1

Q ss_pred             CCCCHHHHHHHHHHhhcccceeeChhHHHHHHHhHhhhhhccCCCCCCceeeccCCccccccccccccccccceeeecCC
Q psy8448          20 EGQSKEKRRNAIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGS   99 (482)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h   99 (482)
                      ..+-+|..+++....-..-+.|.-...++++++.             |..-.+....+.+||......-..      ...
T Consensus        33 ~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGG-------------g~~pky~pNkviIWDD~k~~~i~e------l~f   93 (346)
T KOG2111|consen   33 CDPFKESASRQFIDGGFKIVEMLFRSNYLALVGG-------------GSRPKYPPNKVIIWDDLKERCIIE------LSF   93 (346)
T ss_pred             cCchhhhhhhccccCchhhhhHhhhhceEEEecC-------------CCCCCCCCceEEEEecccCcEEEE------EEe
Confidence            3334444444443333444555555555555553             333455567788898433322222      245


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecC-CCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCcEEEE
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFT-TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGKVKIW  177 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iw  177 (482)
                      ..+|.++.+.++  .|++.- .+.|.||... +-+.+..+.....      .....+++-+.+..+||. |-.-|.|+|-
T Consensus        94 ~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N------PkGlC~~~~~~~k~~LafPg~k~GqvQi~  164 (346)
T KOG2111|consen   94 NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN------PKGLCSLCPTSNKSLLAFPGFKTGQVQIV  164 (346)
T ss_pred             ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC------CCceEeecCCCCceEEEcCCCccceEEEE
Confidence            789999999876  566554 5789999988 4454444443321      223444443334455555 3466999999


Q ss_pred             EcCCCeE-eEEeecccCCCeEEEEEccCCCEEEEEECCCe-EEEEeCCCCceEEEeec--cccceeEEEEcCCCCEEEEE
Q psy8448         178 KIATGQC-LRKLEKAHSLGVTCIQFSRDNSQILTASFDTY-VRIHGLKSGKMLKEFRG--HSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       178 d~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~  253 (482)
                      |+...+. ...+...|...|.|++.+.+|..+|+++..|+ |+|||.++++.+.+++.  ....|.+|+|+|+..+|+++
T Consensus       165 dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs  244 (346)
T KOG2111|consen  165 DLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS  244 (346)
T ss_pred             EhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE
Confidence            9977665 22333789999999999999999999999996 89999999999999874  34569999999999999999


Q ss_pred             eCCCcEEEEECCCCc
Q psy8448         254 SSDGTVKMWNLKTTE  268 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~  268 (482)
                      ++.|+++||.++...
T Consensus       245 SdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  245 SDKGTLHIFSLRDTE  259 (346)
T ss_pred             cCCCeEEEEEeecCC
Confidence            999999999987643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3e-14  Score=135.16  Aligned_cols=218  Identities=18%  Similarity=0.209  Sum_probs=148.2

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCC-
Q psy8448          98 GSKSHVECARFSPDGQYLITGSV---DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSG-  172 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg-  172 (482)
                      .|...+.+.+|+|||+.|+..+.   +..|++||+.+++.......         .....+..|+|+|+.|+. .+.+| 
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~---------~g~~~~~~~SpDG~~l~~~~s~~g~  271 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF---------RGINGAPSFSPDGRRLALTLSRDGN  271 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC---------CCCccCceECCCCCEEEEEEeCCCC
Confidence            56778999999999999998763   34799999988765332211         233457899999997764 45555 


Q ss_pred             -cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-CC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         173 -KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-DT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       173 -~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                       .|.+||+.+++... + ..+.......+|+|+|+.|+.++. +|  .|+++|+.+++... +..+.......+|+|+|+
T Consensus       272 ~~Iy~~d~~~g~~~~-l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~  348 (433)
T PRK04922        272 PEIYVMDLGSRQLTR-L-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGK  348 (433)
T ss_pred             ceEEEEECCCCCeEE-C-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCC
Confidence             59999998876543 3 234445567899999998887764 34  47777877766433 322334455789999999


Q ss_pred             EEEEEeCCC---cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCcEEEEecCCcc
Q psy8448         249 SVLSASSDG---TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT--NTVVIMNMQGQIVRSLSSGKR  323 (482)
Q Consensus       249 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~  323 (482)
                      +|+..+.++   .|.+||+.+++.. .+.    +........|+|+|..++++....  +.|.+++.++.....+..+  
T Consensus       349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~--  421 (433)
T PRK04922        349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSA--  421 (433)
T ss_pred             EEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccC--
Confidence            998765443   5999999887654 332    122345678999994444444332  4577888877766666543  


Q ss_pred             cCcCEEEEEEcC
Q psy8448         324 EGGDFLCCTTSP  335 (482)
Q Consensus       324 ~~~~v~~~~~~~  335 (482)
                       .+.+...+|+|
T Consensus       422 -~g~~~~p~wsp  432 (433)
T PRK04922        422 -DGEVREPAWSP  432 (433)
T ss_pred             -CCCCCCCccCC
Confidence             34556677776

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.2e-13  Score=131.17  Aligned_cols=204  Identities=15%  Similarity=0.164  Sum_probs=141.0

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeEeEEeecccCCCeEE
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---SGKVKIWKIATGQCLRKLEKAHSLGVTC  198 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~  198 (482)
                      ..|.++|...... ..+.        .|...+...+|+|||+.|+..+.   +..|.+||+.+++... + ..+...+..
T Consensus       182 ~~l~~~d~dg~~~-~~lt--------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l-~~~~g~~~~  250 (435)
T PRK05137        182 KRLAIMDQDGANV-RYLT--------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-V-GNFPGMTFA  250 (435)
T ss_pred             eEEEEECCCCCCc-EEEe--------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-e-ecCCCcccC
Confidence            4788888754332 2222        24568999999999999988763   4689999998876543 3 345566778


Q ss_pred             EEEccCCCEEE-EEECCC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeee
Q psy8448         199 IQFSRDNSQIL-TASFDT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-DG--TVKMWNLKTTECTST  272 (482)
Q Consensus       199 i~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~  272 (482)
                      .+|+|+|+.|+ +.+.++  .|++||+++++. ..+..+........|+|||+.|+..+. +|  .|.++|+..++... 
T Consensus       251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-  328 (435)
T PRK05137        251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-  328 (435)
T ss_pred             cEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-
Confidence            99999998876 445454  488889987765 445556666778999999999887764 33  58888887665433 


Q ss_pred             eeccCCCccceeEEEEcCCCCCEEEEEeC-C--CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         273 FKSLGASDIAVNSIHLLPKNTEHFVVCNK-T--NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       273 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      +.   .....+....|+|+| +.++.... .  ..|.+||..+.....+...    ..+....|+|||+.|+..+.+
T Consensus       329 lt---~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~----~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        329 IS---FGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGERILTSG----FLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             ee---cCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCceEeccCC----CCCCCCeECCCCCEEEEEEcc
Confidence            32   223456678899999 55555443 2  3688888865555544432    245678999999998876543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.67  E-value=2.1e-14  Score=119.26  Aligned_cols=156  Identities=19%  Similarity=0.346  Sum_probs=113.6

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCeEEEEecCCC-ceeeccccccccccccccccEEEEEEcCCCCEEEEEe--C
Q psy8448         104 ECARFSPDGQYLITGSV----------DGFIEVWNFTTG-KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS--Q  170 (482)
Q Consensus       104 ~~~~~s~~~~~l~s~~~----------dg~v~iwd~~~~-~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~--~  170 (482)
                      ..+.|+|+|++|+.-..          -|...+|.++.. .....+...       ..++|.+++|+|+++.|++..  .
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-------~~~~I~~~~WsP~g~~favi~g~~   81 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-------KEGPIHDVAWSPNGNEFAVIYGSM   81 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-------CCCceEEEEECcCCCEEEEEEccC
Confidence            45789999988865432          134555555322 222222222       135799999999999876653  5


Q ss_pred             CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC---CeEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448         171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD---TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      ++.|.+||++ ++.+..+   ....+..+.|+|+|++|++++.+   |.|.+||+++.+.+.+.. |. .++.++|+|+|
T Consensus        82 ~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdG  155 (194)
T PF08662_consen   82 PAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDG  155 (194)
T ss_pred             CcccEEEcCc-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCC
Confidence            6799999996 6666665   35678899999999999998754   679999999888887765 33 47899999999


Q ss_pred             CEEEEEeC------CCcEEEEECCCCceeeee
Q psy8448         248 HSVLSASS------DGTVKMWNLKTTECTSTF  273 (482)
Q Consensus       248 ~~l~~~~~------dg~i~i~d~~~~~~~~~~  273 (482)
                      ++|++++.      |+.++||+.. |+.+...
T Consensus       156 r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  156 RYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             CEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            99998864      6779999985 5554443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=8e-14  Score=131.80  Aligned_cols=205  Identities=16%  Similarity=0.166  Sum_probs=132.8

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEeEEeecccCCCeEE
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---GKVKIWKIATGQCLRKLEKAHSLGVTC  198 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~  198 (482)
                      ..|.++|... .....+.        .+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++.....  .....+..
T Consensus       176 ~~L~~~D~dG-~~~~~l~--------~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~--~~~g~~~~  244 (427)
T PRK02889        176 YQLQISDADG-QNAQSAL--------SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA--NFKGSNSA  244 (427)
T ss_pred             cEEEEECCCC-CCceEec--------cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee--cCCCCccc
Confidence            4677777643 2222221        134678899999999999887643   35999999888654332  23445678


Q ss_pred             EEEccCCCEEEE-EECCCeEEEE--eCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-CCcEEEEEC--CCCceeee
Q psy8448         199 IQFSRDNSQILT-ASFDTYVRIH--GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-DGTVKMWNL--KTTECTST  272 (482)
Q Consensus       199 i~~~~~~~~l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~  272 (482)
                      .+|+|||+.|+. .+.+|...+|  |+..+. ...+..+........|+|||+.|+..+. +|...+|.+  .+++.. .
T Consensus       245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~  322 (427)
T PRK02889        245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-R  322 (427)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-E
Confidence            999999998874 5667765554  555444 4455555555677899999998886654 456666654  444432 2


Q ss_pred             eeccCCCccceeEEEEcCCCCCEEEEEeCCC---eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKTN---TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       273 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      +.   ..........|+|+| +.++..+.++   .|.+||+.+.....+...    .......|+|||+.|+..+.++
T Consensus       323 lt---~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~----~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        323 VT---FTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVTALTDT----TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             Ee---cCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeEEccCC----CCccCceECCCCCEEEEEEecC
Confidence            22   112233467899999 5666555443   699999954444444432    1235679999999999877654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1e-13  Score=131.71  Aligned_cols=217  Identities=16%  Similarity=0.137  Sum_probs=149.0

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCc
Q psy8448          98 GSKSHVECARFSPDGQYLITGSV---DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGK  173 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~  173 (482)
                      .|...+.+.+|+|||+.|+..+.   +..|.+||+.+++......         +.+.+...+|+|+|+.|+. .+.++.
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~---------~~g~~~~~~~SPDG~~la~~~~~~g~  269 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN---------FPGMTFAPRFSPDGRKVVMSLSQGGN  269 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec---------CCCcccCcEECCCCCEEEEEEecCCC
Confidence            67889999999999999988763   4689999998876532211         2346778899999998764 455554


Q ss_pred             --EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-CC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         174 --VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-DT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       174 --i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                        |.+||+.+++.. .+ ..+........|+|||+.|+..+. +|  .|+++|+..++.. .+..+...+....|+|+|+
T Consensus       270 ~~Iy~~d~~~~~~~-~L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~  346 (435)
T PRK05137        270 TDIYTMDLRSGTTT-RL-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGD  346 (435)
T ss_pred             ceEEEEECCCCceE-Ec-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCC
Confidence              777798877654 34 345555677999999999887764 33  6888898766543 3433455567789999999


Q ss_pred             EEEEEeCC---CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEecC
Q psy8448         249 SVLSASSD---GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLSS  320 (482)
Q Consensus       249 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~  320 (482)
                      .|+....+   ..|.+||+..+.. ..+.    ....+..+.|+|+|..++++....     ..+.++|+++.....+..
T Consensus       347 ~ia~~~~~~~~~~i~~~d~~~~~~-~~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~  421 (435)
T PRK05137        347 LIAFTKQGGGQFSIGVMKPDGSGE-RILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT  421 (435)
T ss_pred             EEEEEEcCCCceEEEEEECCCCce-Eecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence            99877643   3588889865543 3332    123467889999994444444333     357888887665555543


Q ss_pred             CcccCcCEEEEEEcC
Q psy8448         321 GKREGGDFLCCTTSP  335 (482)
Q Consensus       321 ~~~~~~~v~~~~~~~  335 (482)
                          ...+...+|+|
T Consensus       422 ----~~~~~~p~Wsp  432 (435)
T PRK05137        422 ----PGDASDPAWSP  432 (435)
T ss_pred             ----CCCccCcccCC
Confidence                23456667776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=7.9e-14  Score=132.31  Aligned_cols=204  Identities=17%  Similarity=0.178  Sum_probs=136.9

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEeEEeecccCCCeEE
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---GKVKIWKIATGQCLRKLEKAHSLGVTC  198 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~  198 (482)
                      ..|.+||....... .+.        .+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++.....  .......+
T Consensus       184 ~~l~i~D~~g~~~~-~lt--------~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~--~~~g~~~~  252 (433)
T PRK04922        184 YALQVADSDGYNPQ-TIL--------RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA--SFRGINGA  252 (433)
T ss_pred             EEEEEECCCCCCce-Eee--------cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec--cCCCCccC
Confidence            46889997644322 221        234678999999999999988743   46999999887654332  23444567


Q ss_pred             EEEccCCCEEEE-EECCC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-CCc--EEEEECCCCceeee
Q psy8448         199 IQFSRDNSQILT-ASFDT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-DGT--VKMWNLKTTECTST  272 (482)
Q Consensus       199 i~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~  272 (482)
                      ++|+|+|+.|+. .+.+|  .|++||+.+++. ..+..+.......+|+|||+.|+.++. +|.  |.++|+.+++... 
T Consensus       253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-  330 (433)
T PRK04922        253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-  330 (433)
T ss_pred             ceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-
Confidence            899999998764 45555  699999988764 345555555678899999998887764 444  6677777665433 


Q ss_pred             eeccCCCccceeEEEEcCCCCCEEEEEeCC-C--eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKT-N--TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       273 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      +.   ........++|+|+| +.++..+.+ +  .|.+||+.+.....+...    .......|+|||++|+..+.+
T Consensus       331 lt---~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~----~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        331 LT---FQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVRTLTPG----SLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             ee---cCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeEECCCC----CCCCCceECCCCCEEEEEEec
Confidence            22   122334568999999 555554433 2  689999954444455432    123457899999998876653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=2.7e-13  Score=124.04  Aligned_cols=245  Identities=19%  Similarity=0.247  Sum_probs=151.7

Q ss_pred             ceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-C
Q psy8448          92 SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-Q  170 (482)
Q Consensus        92 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~  170 (482)
                      ...+..++ ..-..+.|+|||+++++++.||.|.++|+.+++.+.++...         ....++++++||++++++. .
T Consensus        29 ~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G---------~~~~~i~~s~DG~~~~v~n~~   98 (369)
T PF02239_consen   29 VARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG---------GNPRGIAVSPDGKYVYVANYE   98 (369)
T ss_dssp             EEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S---------SEEEEEEE--TTTEEEEEEEE
T ss_pred             EEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC---------CCcceEEEcCCCCEEEEEecC
Confidence            33444333 23345789999999999999999999999999988887765         4578899999999998876 6


Q ss_pred             CCcEEEEEcCCCeEeEEeecc------cCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCceEE-EeeccccceeEEE
Q psy8448         171 SGKVKIWKIATGQCLRKLEKA------HSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKMLK-EFRGHSSFVNDIT  242 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-~~~~~~~~i~~l~  242 (482)
                      .+.+.++|.++.+.+..+...      ....+..+..+|....++..-. .+.|.+.|....+.+. .............
T Consensus        99 ~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~  178 (369)
T PF02239_consen   99 PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG  178 (369)
T ss_dssp             TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred             CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc
Confidence            899999999999988877422      2346778888888876665554 4889999987765432 2223455677899


Q ss_pred             EcCCCCEEEEE-eCCCcEEEEECCCCceeeeeecc-CCCccceeEEEEcCCCC---------CEEEEEeCCCeEEEEEc-
Q psy8448         243 FTADGHSVLSA-SSDGTVKMWNLKTTECTSTFKSL-GASDIAVNSIHLLPKNT---------EHFVVCNKTNTVVIMNM-  310 (482)
Q Consensus       243 ~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~---------~~l~~~~~d~~i~i~d~-  310 (482)
                      |+|++++++++ ..+..|.++|.++++.+..+..- ..|..+...+ .+|..+         ...++.-....+.+||. 
T Consensus       179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~  257 (369)
T PF02239_consen  179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY  257 (369)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred             cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhh
Confidence            99999988775 45678999999998776655421 1223333322 122221         12222222234556776 


Q ss_pred             CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEE----eCCcEEEE
Q psy8448         311 QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV----GEDMVLVV  351 (482)
Q Consensus       311 ~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~----~~dg~i~i  351 (482)
                      ..+.++.+...   ... .-+..+|+++++.+.    ...+.|.+
T Consensus       258 ~wkvv~~I~~~---G~g-lFi~thP~s~~vwvd~~~~~~~~~v~v  298 (369)
T PF02239_consen  258 AWKVVKTIPTQ---GGG-LFIKTHPDSRYVWVDTFLNPDADTVQV  298 (369)
T ss_dssp             BTSEEEEEE-S---SSS---EE--TT-SEEEEE-TT-SSHT-EEE
T ss_pred             cCeEEEEEECC---CCc-ceeecCCCCccEEeeccCCCCCceEEE
Confidence            57788888764   334 668889999999987    44467773

...

>KOG2394|consensus

Probab=99.65  E-value=2.2e-14  Score=127.88  Aligned_cols=220  Identities=14%  Similarity=0.184  Sum_probs=150.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEE-----cCCCCEEEEEeCCCcEEEE
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-----SRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~-----~~~~~~l~~~~~dg~i~iw  177 (482)
                      +....++-.|++|+..- ...+++|+.+.+.....-.....  +.  ....+|-+|     .|.+--++.|-..|.+.+.
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~--y~--gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~i  200 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKRE--YK--GTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLI  200 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhc--cc--CCCCceecccccccCCCCcceEEeeccCceEEe
Confidence            44555555677776653 24588998875332211100000  00  123344444     3456678888889999999


Q ss_pred             EcCCCeEeEEee---cccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCC--------------Cc-------------
Q psy8448         178 KIATGQCLRKLE---KAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKS--------------GK-------------  226 (482)
Q Consensus       178 d~~~~~~~~~~~---~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~--------------~~-------------  226 (482)
                      |....+..+.+.   ......++|+.|-|. ...++++-.+|.+++||..-              +.             
T Consensus       201 dp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r  280 (636)
T KOG2394|consen  201 DPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR  280 (636)
T ss_pred             cchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence            976633222221   123467999999994 45677788899999997631              11             


Q ss_pred             -eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         227 -MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       227 -~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                       ++..+.--.+.|..++|+|||++|++.+.||.++|||+.+.+.+..++   .--....|++|+||| +++++|+.|.-|
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---SYFGGLLCvcWSPDG-KyIvtGGEDDLV  356 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK---SYFGGLLCVCWSPDG-KYIVTGGEDDLV  356 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH---hhccceEEEEEcCCc-cEEEecCCcceE
Confidence             111122234578999999999999999999999999999987776665   445678999999999 999999999999


Q ss_pred             EEEEc-CCcEEEEecCCcccCcCEEEEEEc
Q psy8448         306 VIMNM-QGQIVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       306 ~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      .||.+ +.+.+..-..   |...|..++|+
T Consensus       357 tVwSf~erRVVARGqG---HkSWVs~VaFD  383 (636)
T KOG2394|consen  357 TVWSFEERRVVARGQG---HKSWVSVVAFD  383 (636)
T ss_pred             EEEEeccceEEEeccc---cccceeeEeec
Confidence            99999 4555554444   47889999988

>KOG1354|consensus

Probab=99.62  E-value=1.8e-13  Score=115.49  Aligned_cols=253  Identities=14%  Similarity=0.244  Sum_probs=171.5

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCce-----eeccccccc----cccccccccEEEEEEcCCC--CEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKI-----RKDLKYQAQ----DNFMLMEEAVMSLAYSRDS--EMLAS  167 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~----~~~~~h~~~i~~l~~~~~~--~~l~~  167 (482)
                      ..+-|.++.|..+|.+||+|..+|.|.++.-.....     ...++.+..    .....-...|..+.|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            356789999999999999999999999997443221     011110000    0011124679999999865  46777


Q ss_pred             EeCCCcEEEEEcCCCe-----------------------------------EeEEeecccCCCeEEEEEccCCCEEEEEE
Q psy8448         168 GSQSGKVKIWKIATGQ-----------------------------------CLRKLEKAHSLGVTCIQFSRDNSQILTAS  212 (482)
Q Consensus       168 ~~~dg~i~iwd~~~~~-----------------------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  212 (482)
                      .+.|.+|++|.+....                                   +.+.+...|..-|.++.++.|...++++.
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            8899999999875321                                   11223356777899999999998888876


Q ss_pred             CCCeEEEEeCCCCce---EEEeecc-----ccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCce----eeeeecc---
Q psy8448         213 FDTYVRIHGLKSGKM---LKEFRGH-----SSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTTEC----TSTFKSL---  276 (482)
Q Consensus       213 ~dg~i~i~d~~~~~~---~~~~~~~-----~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~---  276 (482)
                       |=.|.+|+++-...   +..++++     ..-|++..|+| ..+.++-.+..|+|++-|++....    ...+...   
T Consensus       184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence             78899999864322   2222322     34588999999 457788888899999999984321    1111100   


Q ss_pred             ------CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCccc---------Cc---CEEEEEEcCC
Q psy8448         277 ------GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGKRE---------GG---DFLCCTTSPR  336 (482)
Q Consensus       277 ------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~---------~~---~v~~~~~~~~  336 (482)
                            ..--..|..+.|++.| +++++ -.--+|++||+  +.+++.++..+...         ..   .-..++|+-+
T Consensus       263 ~~rsffseiIsSISDvKFs~sG-ryils-RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~  340 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSG-RYILS-RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN  340 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCC-cEEEE-eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence                  0112467889999998 55554 33468999999  46777776654221         11   2246899999


Q ss_pred             CCEEEEEeCCcEEEEEee
Q psy8448         337 GEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       337 g~~l~~~~~dg~i~iw~~  354 (482)
                      +.++++|+..+..++++.
T Consensus       341 ~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  341 DSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             cceEecccccceEEEecC
Confidence            999999999999997663

>KOG1240|consensus

Probab=99.60  E-value=1.8e-13  Score=133.50  Aligned_cols=216  Identities=17%  Similarity=0.176  Sum_probs=151.1

Q ss_pred             cccccccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC-------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeE
Q psy8448         146 FMLMEEAVMSLAYSRDS-EMLASGSQSGKVKIWKIATG-------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV  217 (482)
Q Consensus       146 ~~~h~~~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i  217 (482)
                      +..|+..+..++.++.. .++++|+.||+|++||++.-       +...++ ......+.++...+.+..+|+++.||.|
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            34467888888888755 99999999999999998642       122233 2356789999999999999999999999


Q ss_pred             EEEeCCCCc-------eEEEeecc-cccee-EEEEcC-CCC-EEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEE
Q psy8448         218 RIHGLKSGK-------MLKEFRGH-SSFVN-DITFTA-DGH-SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSI  286 (482)
Q Consensus       218 ~i~d~~~~~-------~~~~~~~~-~~~i~-~l~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  286 (482)
                      .+.+++..+       .......+ .+.+. .-+|.. .+. .++.+...+.|..||+++......++.. ...+.|+++
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~-~~hG~vTSi 1201 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ-LRHGLVTSI 1201 (1431)
T ss_pred             EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC-ccccceeEE
Confidence            999987621       11111111 22232 333332 233 6788888999999999987766665533 345689999


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCC-cEEEEecCCcccCcCEEEEEEcCC---CCEEEEEe--CCcEEEEEeehhhhhh
Q psy8448         287 HLLPKNTEHFVVCNKTNTVVIMNMQG-QIVRSLSSGKREGGDFLCCTTSPR---GEWIYCVG--EDMVLVVRLIQQYLKE  360 (482)
Q Consensus       287 ~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~---g~~l~~~~--~dg~i~iw~~~~~~~~  360 (482)
                      +.+|.+ ..++.|+..|.+.+||++- .++.......  ..++..+..+|-   ....++++  ..+.+.          
T Consensus      1202 ~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs---------- 1268 (1431)
T KOG1240|consen 1202 VIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVS---------- 1268 (1431)
T ss_pred             EecCCc-eEEEEecCCceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCcee----------
Confidence            999998 7999999999999999974 4444444322  467777776654   34555544  456677          


Q ss_pred             hcccccceeeeecccceeeccccc
Q psy8448         361 SNLMKTLQCLQEETGVSLNTVDSV  384 (482)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~  384 (482)
                              .|++.+|.+..+++..
T Consensus      1269 --------~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1269 --------TWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             --------eeecccCcceEEEEcC
Confidence                    7888888666666554

>KOG3881|consensus

Probab=99.60  E-value=1.9e-13  Score=117.40  Aligned_cols=224  Identities=14%  Similarity=0.245  Sum_probs=165.7

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC-EEEEEeCC--CcE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE-MLASGSQS--GKV  174 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~~~~~d--g~i  174 (482)
                      ..+.+|..++..  ...|++|-.+|.+.+|....+.........    +.. -..+..|.-++... .+++|+..  ..+
T Consensus       103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~----la~-g~g~~~~r~~~~~p~Iva~GGke~~n~l  175 (412)
T KOG3881|consen  103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIK----LAT-GPGLYDVRQTDTDPYIVATGGKENINEL  175 (412)
T ss_pred             cccccccchhhc--CCEEEEEecCCcEEEEeccCCcccccccee----eec-CCceeeeccCCCCCceEecCchhcccce
Confidence            445666666655  336788888999999998855422110000    000 13566666677544 45558887  789


Q ss_pred             EEEEcCCCeEeEEeecccC--------CCeEEEEEccC--CCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEE
Q psy8448         175 KIWKIATGQCLRKLEKAHS--------LGVTCIQFSRD--NSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITF  243 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~--------~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~  243 (482)
                      .+||++..+.+..-.....        -.++.+.|-+.  ...|++++.-+.+++||.+.+ +++..+.-...+++++..
T Consensus       176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l  255 (412)
T KOG3881|consen  176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL  255 (412)
T ss_pred             eeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence            9999998866654422111        23677888886  788999999999999999865 477888878899999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeee-eeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cEEEEecCC
Q psy8448         244 TADGHSVLSASSDGTVKMWNLKTTECTST-FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG-QIVRSLSSG  321 (482)
Q Consensus       244 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~  321 (482)
                      .|+++.+++|..-|.+..||++.++.... +.   +..+.|.+|..+|.. .++++++-|+.++|+|+.. +++....- 
T Consensus       256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k---g~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll~kvYv-  330 (412)
T KOG3881|consen  256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK---GITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHKVYV-  330 (412)
T ss_pred             cCCCcEEEEecccchhheecccCceeeccccC---CccCCcceEEEcCCC-ceEEeeccceeEEEeecccchhhhhhhh-
Confidence            99999999999999999999999987766 55   778899999999988 8999999999999999943 44444433 


Q ss_pred             cccCcCEEEEEEcCC
Q psy8448         322 KREGGDFLCCTTSPR  336 (482)
Q Consensus       322 ~~~~~~v~~~~~~~~  336 (482)
                         ...++++.+.++
T Consensus       331 ---Ks~lt~il~~~~  342 (412)
T KOG3881|consen  331 ---KSRLTFILLRDD  342 (412)
T ss_pred             ---hccccEEEecCC
Confidence               345566666554

>KOG3881|consensus

Probab=99.60  E-value=2.7e-13  Score=116.38  Aligned_cols=247  Identities=16%  Similarity=0.237  Sum_probs=177.3

Q ss_pred             CCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          98 GSKSHVECARFSPDG--QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      .-...|..++|..++  ..|...+.+-.+..+.+..........  ..........+|..++..  ...|++|-.+|.+.
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~--~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~  128 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLD--DAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQ  128 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccc--cccccccccccccchhhc--CCEEEEEecCCcEE
Confidence            345678888887654  455555567778887777666544431  001111224667776665  34788899999999


Q ss_pred             EEEcCCCe----EeEEeecccCCCeEEEEEccCCCE-EEEEECC--CeEEEEeCCCCceEEEeecc---------cccee
Q psy8448         176 IWKIATGQ----CLRKLEKAHSLGVTCIQFSRDNSQ-ILTASFD--TYVRIHGLKSGKMLKEFRGH---------SSFVN  239 (482)
Q Consensus       176 iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d--g~i~i~d~~~~~~~~~~~~~---------~~~i~  239 (482)
                      +|..+.+.    .+..+  ....++..+.-++.... +++|+..  ..+.+||+++.+.+.+-+.-         .-.++
T Consensus       129 ~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t  206 (412)
T KOG3881|consen  129 VRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT  206 (412)
T ss_pred             EEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence            99987443    23333  23355667777775554 5568888  78999999988655443321         22467


Q ss_pred             EEEEcCC--CCEEEEEeCCCcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cEE
Q psy8448         240 DITFTAD--GHSVLSASSDGTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG-QIV  315 (482)
Q Consensus       240 ~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~  315 (482)
                      ++.|-+.  ...|++++.-+.+++||.+.++ ++..+.   ..+.+++++...|.+ +++++|..-+.+..||.++ +.+
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~  282 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---FLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLL  282 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCcccCcceeEec---cccCcceeeeecCCC-cEEEEecccchhheecccCceee
Confidence            8889887  8899999999999999998653 455555   668899999999999 8999999999999999964 444


Q ss_pred             EEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         316 RSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       316 ~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      .....+.  .+.++++..+|.+++|+++|-|..++|+|++.
T Consensus       283 g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  283 GCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            4423222  78899999999999999999999999777764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.60  E-value=1.4e-11  Score=113.14  Aligned_cols=230  Identities=20%  Similarity=0.260  Sum_probs=148.6

Q ss_pred             EEEEeCC----CeEEEEec--CCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----CCcEEEEEcCCC--
Q psy8448         115 LITGSVD----GFIEVWNF--TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----SGKVKIWKIATG--  182 (482)
Q Consensus       115 l~s~~~d----g~v~iwd~--~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~--  182 (482)
                      ++.|+..    +.|.+|++  .++++........       ......++++|++++|.++..    ++.|..|++...  
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~-------~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g   74 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE-------GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG   74 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE-------SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC-------CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc
Confidence            4455555    68888888  4444332221111       356778999999999999876    578999988764  


Q ss_pred             eE--eEEeecccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCC-CceEEE---ee----------ccccceeEEEEcC
Q psy8448         183 QC--LRKLEKAHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKS-GKMLKE---FR----------GHSSFVNDITFTA  245 (482)
Q Consensus       183 ~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~---~~----------~~~~~i~~l~~~~  245 (482)
                      +.  +... .........++++|++++|+++.. +|.|.++++.. +.....   +.          .......++.++|
T Consensus        75 ~L~~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p  153 (345)
T PF10282_consen   75 TLTLLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP  153 (345)
T ss_dssp             EEEEEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred             eeEEeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence            32  2333 223455678999999999998874 88999999987 333222   11          1224467899999


Q ss_pred             CCCEEEEEeC-CCcEEEEECCCCc--eee--eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEE--
Q psy8448         246 DGHSVLSASS-DGTVKMWNLKTTE--CTS--TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVR--  316 (482)
Q Consensus       246 ~~~~l~~~~~-dg~i~i~d~~~~~--~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~--  316 (482)
                      +++++++... ...|.+|++....  ...  .+..  ........+.|+|++..++++.-.++.|.++++.  ...+.  
T Consensus       154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~  231 (345)
T PF10282_consen  154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI  231 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence            9998888754 4579999997754  222  2221  3455678999999996666777788999999984  22222  


Q ss_pred             -EecCC---cccCcCEEEEEEcCCCCEEEEEe-CCcEEEEEee
Q psy8448         317 -SLSSG---KREGGDFLCCTTSPRGEWIYCVG-EDMVLVVRLI  354 (482)
Q Consensus       317 -~~~~~---~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~~  354 (482)
                       .+...   .........++++|||++|+++. .++.|.+|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence             22211   11122577899999999998766 4677885543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2315|consensus

Probab=99.59  E-value=9.6e-13  Score=118.36  Aligned_cols=227  Identities=19%  Similarity=0.220  Sum_probs=141.9

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-----eCC----
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-----SQS----  171 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-----~~d----  171 (482)
                      .+.+..++|++|+++|.+. +..++|++..++..+.+...          ..+.++.|+|-+.+|.+-     ..+    
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~----------~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~  103 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL----------KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS  103 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc----------ceeeeeeecccccccccccccccccCCCCC
Confidence            3477888999999888776 57899999988863332221          268999999999988762     122    


Q ss_pred             -CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecccccee-----------
Q psy8448         172 -GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVN-----------  239 (482)
Q Consensus       172 -g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-----------  239 (482)
                       ..+.+|+++++.....+....... ++..|++|..+.+ --..+.+.+|++.+.+.... +-|...|+           
T Consensus       104 ~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~  180 (566)
T KOG2315|consen  104 NPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPP  180 (566)
T ss_pred             CCceeeeeeccceehhheehhhhcC-cccccccchhhhh-hhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCc
Confidence             357799998855444443323322 5666766654322 22244566666544221111 00122233           


Q ss_pred             -----------------------------------------EEEEcCCCCEEE-EE--eCC---------CcEEEEECCC
Q psy8448         240 -----------------------------------------DITFTADGHSVL-SA--SSD---------GTVKMWNLKT  266 (482)
Q Consensus       240 -----------------------------------------~l~~~~~~~~l~-~~--~~d---------g~i~i~d~~~  266 (482)
                                                               .+.|++-|.-|+ .+  .-|         .+++++++..
T Consensus       181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g  260 (566)
T KOG2315|consen  181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG  260 (566)
T ss_pred             eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence                                                     344554443222 11  111         2355555553


Q ss_pred             CceeeeeeccCCCccceeEEEEcCCCCCEEEE-EeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVV-CNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       267 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      ..+.-.+    ...++|.++.|+|++.++.++ |-+-..+.|||++++++..+.     .++-.++-|+|.|++|+.+|.
T Consensus       261 ~s~~V~L----~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-----egpRN~~~fnp~g~ii~lAGF  331 (566)
T KOG2315|consen  261 ESVSVPL----LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-----EGPRNTAFFNPHGNIILLAGF  331 (566)
T ss_pred             ceEEEec----CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-----CCCccceEECCCCCEEEEeec
Confidence            2322222    457899999999999555444 456788999999999999887     456688999999999998876


Q ss_pred             C---cEEE
Q psy8448         346 D---MVLV  350 (482)
Q Consensus       346 d---g~i~  350 (482)
                      +   |.+-
T Consensus       332 GNL~G~mE  339 (566)
T KOG2315|consen  332 GNLPGDME  339 (566)
T ss_pred             CCCCCceE
Confidence            5   5566

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.59  E-value=6e-12  Score=115.30  Aligned_cols=211  Identities=16%  Similarity=0.188  Sum_probs=140.8

Q ss_pred             CEE-EEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc
Q psy8448         113 QYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA  191 (482)
Q Consensus       113 ~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  191 (482)
                      +++ ++-..+|.|.+.|..+.+.+..+....        ..-..+.++||++++++++.||.|.++|+.+++.+.++.  
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~--------~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~--   75 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG--------APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK--   75 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST--------TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCC--------CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe--
Confidence            344 455678999999999999888776542        233457899999999999999999999999999999885  


Q ss_pred             cCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeecc-------ccceeEEEEcCCCCEEEEEeC-CCcEEEE
Q psy8448         192 HSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGH-------SSFVNDITFTADGHSVLSASS-DGTVKMW  262 (482)
Q Consensus       192 ~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~l~~~~~~~~l~~~~~-dg~i~i~  262 (482)
                      -......+++++||++++++. ..+.+.++|.++.+.++.+...       ...+.++..+|....++..-. .+.|.+.
T Consensus        76 ~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV  155 (369)
T PF02239_consen   76 VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV  155 (369)
T ss_dssp             -SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred             cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence            344578899999999998775 6889999999999998887532       345778888888886665554 5888888


Q ss_pred             ECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCc-ccCcCEEEEEEcCC
Q psy8448         263 NLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGK-REGGDFLCCTTSPR  336 (482)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~-~~~~~v~~~~~~~~  336 (482)
                      |....+....-. . ..........|.|++..++++...++.|.++|. +++....+.... .+..+...+ .+|.
T Consensus       156 dy~d~~~~~~~~-i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~  228 (369)
T PF02239_consen  156 DYSDPKNLKVTT-I-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPG  228 (369)
T ss_dssp             ETTTSSCEEEEE-E-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETT
T ss_pred             Eeccccccceee-e-cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCC
Confidence            987764332211 1 234456788999999445555677889999999 455555554332 233444444 3444

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.58  E-value=3.9e-12  Score=121.18  Aligned_cols=205  Identities=18%  Similarity=0.207  Sum_probs=138.8

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEeEEeecccCCCeEE
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---GKVKIWKIATGQCLRKLEKAHSLGVTC  198 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~  198 (482)
                      ..|.++|........ +.        .+...+...+|+|+|++|+.+..+   ..|++||+.+++.....  .+...+.+
T Consensus       170 ~~l~~~d~~g~~~~~-l~--------~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--~~~~~~~~  238 (417)
T TIGR02800       170 YELQVADYDGANPQT-IT--------RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--SFPGMNGA  238 (417)
T ss_pred             ceEEEEcCCCCCCEE-ee--------cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--cCCCCccc
Confidence            368888875433222 21        124568889999999999988654   47999999887654332  34455677


Q ss_pred             EEEccCCCEEEEE-ECCC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeee
Q psy8448         199 IQFSRDNSQILTA-SFDT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD-G--TVKMWNLKTTECTST  272 (482)
Q Consensus       199 i~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~  272 (482)
                      ++|+|+++.|+.. +.++  .|++||+.+++.. .+..+........|+|+++.|+..+.. +  .|.++|+.+++.. .
T Consensus       239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~  316 (417)
T TIGR02800       239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R  316 (417)
T ss_pred             eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence            8999999887654 4343  5999999877543 344454555678999999988776543 3  5888888876643 2


Q ss_pred             eeccCCCccceeEEEEcCCCCCEEEEEeCCC---eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKTN---TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       273 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      +.   .+......+.|+|++ ..++.++.++   .|.+||+.+.....+...    .......|+|||++|+..+.++
T Consensus       317 l~---~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~----~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       317 LT---FRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGERVLTDT----GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             ee---cCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCeEEccCC----CCCCCceECCCCCEEEEEEeCC
Confidence            32   334556788999999 6666666654   788888855444444432    1234568999999998877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547|consensus

Probab=99.57  E-value=1.5e-12  Score=117.89  Aligned_cols=193  Identities=18%  Similarity=0.295  Sum_probs=159.3

Q ss_pred             cCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEc------C--------------CCCEEEEE
Q psy8448         109 SPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS------R--------------DSEMLASG  168 (482)
Q Consensus       109 s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~------~--------------~~~~l~~~  168 (482)
                      .|...++|....||.++||+..+++....+......     ++..++..|.      |              +-..++-|
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~-----s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg   76 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL-----SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG   76 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhc-----cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence            345678999999999999999999877766544322     3445555552      1              22467788


Q ss_pred             eCCCcEEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448         169 SQSGKVKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      ...|.|.+|++..++....+. ..|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+......+.+++.+||+
T Consensus        77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence            899999999999999888876 5789999999999888899999999999999999999999999888899999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC-----CCCEEEEEeCCCeEEEEEcC
Q psy8448         248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK-----NTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~~l~~~~~d~~i~i~d~~  311 (482)
                      ..+++++  +.|++||+++++.+..|.   +|.++|+++.|--.     |..+|.+...+..+.+|-..
T Consensus       157 ~~l~~as--~~ik~~~~~~kevv~~ft---gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIETKEVVITFT---GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             CEEEecc--ceEEEEEccCceEEEEec---CCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            9999887  589999999999999998   99999999999876     53445555566677788763

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.57  E-value=1.7e-12  Score=123.62  Aligned_cols=206  Identities=18%  Similarity=0.200  Sum_probs=140.4

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCC-
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVD---GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSG-  172 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg-  172 (482)
                      .+...+.+.+|+|||++|+.+..+   ..|++||+.+++......         +...+.+++|+|+++.|+.. +.++ 
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~---------~~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS---------FPGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec---------CCCCccceEECCCCCEEEEEECCCCC
Confidence            566779999999999999987643   479999998876433221         13456678999999977654 4443 


Q ss_pred             -cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-C--eEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         173 -KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-T--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       173 -~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                       .|.+||+.++.... + ..+........|+|+++.|+..+.. +  .|+++|+.+++. ..+..+...+....|+|+++
T Consensus       258 ~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~  334 (417)
T TIGR02800       258 PDIYVMDLDGKQLTR-L-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGD  334 (417)
T ss_pred             ccEEEEECCCCCEEE-C-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCC
Confidence             58889988765433 3 2344445577899999988776543 2  688889877664 34444556677889999999


Q ss_pred             EEEEEeCCC---cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcEEEEecC
Q psy8448         249 SVLSASSDG---TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN--TVVIMNMQGQIVRSLSS  320 (482)
Q Consensus       249 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~  320 (482)
                      +++.++.++   .|.+||+.++... .+.   . ........|+|++..++++...++  .+.+.+.+++....+..
T Consensus       335 ~i~~~~~~~~~~~i~~~d~~~~~~~-~l~---~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~  406 (417)
T TIGR02800       335 LIAFVHREGGGFNIAVMDLDGGGER-VLT---D-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPL  406 (417)
T ss_pred             EEEEEEccCCceEEEEEeCCCCCeE-Ecc---C-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence            999888775   7899999876532 222   1 122345689999944444444333  46666667766665543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.5e-12  Score=123.47  Aligned_cols=218  Identities=21%  Similarity=0.209  Sum_probs=142.7

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCc
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVD---GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGK  173 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~  173 (482)
                      .+...+.+..|||||+.|+..+.+   ..|++||+.+++.......         .......+|+|||+.|+.. +.+|.
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---------~g~~~~~~wSPDG~~La~~~~~~g~  285 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---------PGINGAPRFSPDGKKLALVLSKDGQ  285 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---------CCCcCCeeECCCCCEEEEEEeCCCC
Confidence            456788899999999999876532   3689999988764332211         1223467999999988764 55664


Q ss_pred             --EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-CC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         174 --VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-DT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       174 --i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                        |.++|+.+++... + ..+.......+|+|+++.|+..+. ++  .|+++|+.+++... +..........+|+|||+
T Consensus       286 ~~Iy~~dl~tg~~~~-l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~  362 (448)
T PRK04792        286 PEIYVVDIATKALTR-I-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGR  362 (448)
T ss_pred             eEEEEEECCCCCeEE-C-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCC
Confidence              7788887776433 3 234445677899999998876654 33  57778887776533 222223344578999999


Q ss_pred             EEEEEeC-CC--cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCe--EEEEEcCCcEEEEecCCcc
Q psy8448         249 SVLSASS-DG--TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT--VVIMNMQGQIVRSLSSGKR  323 (482)
Q Consensus       249 ~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~  323 (482)
                      +|+..+. ++  .|.++|+.+++... +.   .. .......|+|++..++++...++.  +.+++.+|.....+...  
T Consensus       363 ~l~~~~~~~g~~~I~~~dl~~g~~~~-lt---~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~--  435 (448)
T PRK04792        363 SMIMVNRTNGKFNIARQDLETGAMQV-LT---ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAG--  435 (448)
T ss_pred             EEEEEEecCCceEEEEEECCCCCeEE-cc---CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCC--
Confidence            9887655 33  46667888776432 22   11 112245799999555555555543  67778888777776543  


Q ss_pred             cCcCEEEEEEcC
Q psy8448         324 EGGDFLCCTTSP  335 (482)
Q Consensus       324 ~~~~v~~~~~~~  335 (482)
                       .+.+...+|+|
T Consensus       436 -~g~~~~p~Wsp  446 (448)
T PRK04792        436 -QGEVKSPAWSP  446 (448)
T ss_pred             -CCCcCCCccCC
Confidence             34566777876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.56  E-value=3.1e-11  Score=110.87  Aligned_cols=249  Identities=14%  Similarity=0.211  Sum_probs=162.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEeC----CCeEEEEecCCC--ceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCC
Q psy8448         100 KSHVECARFSPDGQYLITGSV----DGFIEVWNFTTG--KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSG  172 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~----dg~v~iwd~~~~--~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg  172 (482)
                      ......++++|++++|.+...    +|.|..|.+...  ++...-....      .......++++|++++|+++. .+|
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~------~g~~p~~i~~~~~g~~l~vany~~g  109 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS------GGSSPCHIAVDPDGRFLYVANYGGG  109 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE------SSSCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc------CCCCcEEEEEecCCCEEEEEEccCC
Confidence            445677899999999988876    579999998764  3222111111      124567899999999999987 589


Q ss_pred             cEEEEEcCC-CeEeEE---ee---------cccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCc--eE--EEee-c
Q psy8448         173 KVKIWKIAT-GQCLRK---LE---------KAHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGK--ML--KEFR-G  233 (482)
Q Consensus       173 ~i~iwd~~~-~~~~~~---~~---------~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~--~~~~-~  233 (482)
                      .|.++++.. +.....   +.         ........++.|+|+++++++... ...|.+|++....  ..  ..+. .
T Consensus       110 ~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~  189 (345)
T PF10282_consen  110 SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP  189 (345)
T ss_dssp             EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred             eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc
Confidence            999999987 333222   10         012345789999999999888753 3479999987655  21  2222 3


Q ss_pred             cccceeEEEEcCCCCEEEEEeC-CCcEEEEECC--CCc--eeeeeeccC---CCccceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         234 HSSFVNDITFTADGHSVLSASS-DGTVKMWNLK--TTE--CTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       234 ~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~--~~~--~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                      .......+.|+|+++++++..+ ++.|.++++.  ++.  .+..+....   ........|+++|++..++++....+.|
T Consensus       190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence            4556899999999998877654 7789999988  332  222222211   1122578899999995555556677899


Q ss_pred             EEEEcC--CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe-CCcEEEEEee
Q psy8448         306 VIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-EDMVLVVRLI  354 (482)
Q Consensus       306 ~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~~  354 (482)
                      .+|+++  ...+..+..........+.++++|+|++|++++ .++.|.+|++
T Consensus       270 ~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  270 SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            999993  222333322211134478999999999999877 5678886643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=4.4e-12  Score=120.90  Aligned_cols=218  Identities=19%  Similarity=0.244  Sum_probs=143.9

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCC-
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVD---GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSG-  172 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg-  172 (482)
                      .+...+...+|+|||+.|+..+.+   ..|.+||+.+++.......         .+.+....|+|+|+.|+.. ..+| 
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---------~g~~~~~~~SpDG~~la~~~~~~g~  266 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---------EGLNGAPAWSPDGSKLAFVLSKDGN  266 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---------CCCcCCeEECCCCCEEEEEEccCCC
Confidence            567789999999999999876643   3699999988865432221         2334568999999988754 4444 


Q ss_pred             -cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-C--CeEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         173 -KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-D--TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       173 -~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                       .|.+||+.+++... + ..+........|+|+|+.|+..+. +  ..|+++|+.+++... +...........|+|+++
T Consensus       267 ~~Iy~~d~~~~~~~~-l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~  343 (430)
T PRK00178        267 PEIYVMDLASRQLSR-V-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGK  343 (430)
T ss_pred             ceEEEEECCCCCeEE-c-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence             68888998776543 3 234445667899999998876654 2  368888888776433 222223344578999999


Q ss_pred             EEEEEeCC-C--cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcEEEEecCCcc
Q psy8448         249 SVLSASSD-G--TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN--TVVIMNMQGQIVRSLSSGKR  323 (482)
Q Consensus       249 ~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~  323 (482)
                      .|+..+.+ +  .|.++|+.+++... +..    ........|+|+|..++++...++  .+.+++.++.....+...  
T Consensus       344 ~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~----~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~--  416 (430)
T PRK00178        344 TLVMVHRQDGNFHVAAQDLQRGSVRI-LTD----TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTA--  416 (430)
T ss_pred             EEEEEEccCCceEEEEEECCCCCEEE-ccC----CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCC--
Confidence            99877653 3  48889998876433 321    112235689999954444444443  466777777666555532  


Q ss_pred             cCcCEEEEEEcC
Q psy8448         324 EGGDFLCCTTSP  335 (482)
Q Consensus       324 ~~~~v~~~~~~~  335 (482)
                       .+.+...+|+|
T Consensus       417 -~g~~~~p~ws~  427 (430)
T PRK00178        417 -QGEVREPSWSP  427 (430)
T ss_pred             -CCCcCCCccCC
Confidence             34556667776

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.54  E-value=2.9e-11  Score=122.75  Aligned_cols=240  Identities=11%  Similarity=0.132  Sum_probs=162.9

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEE----ecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVW----NFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      ..+.|.++.|-++...++.+..+|.|.+.    +..+......-.         -+..|.+++||||+..|+..+.++++
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---------vd~GI~a~~WSPD~Ella~vT~~~~l  144 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---------VDSGILAASWSPDEELLALVTGEGNL  144 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---------EcCcEEEEEECCCcCEEEEEeCCCEE
Confidence            45789999999999999999999999999    544443222111         14789999999999999999999988


Q ss_pred             EEEEcCCCeEeE------------------------Eee------------c-----------ccCCCeEEEEEccCCCE
Q psy8448         175 KIWKIATGQCLR------------------------KLE------------K-----------AHSLGVTCIQFSRDNSQ  207 (482)
Q Consensus       175 ~iwd~~~~~~~~------------------------~~~------------~-----------~~~~~v~~i~~~~~~~~  207 (482)
                      .+..- +.+.+.                        .|.            .           .....-..++|-.||.+
T Consensus       145 ~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y  223 (928)
T PF04762_consen  145 LLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY  223 (928)
T ss_pred             EEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence            87642 111110                        000            0           02234567889999999


Q ss_pred             EEEEEC---C---CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeeeecc-C
Q psy8448         208 ILTASF---D---TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS---DGTVKMWNLKTTECTSTFKSL-G  277 (482)
Q Consensus       208 l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~-~  277 (482)
                      +|+.+.   .   ..++||+- .|+...+-..-.+--.+++|.|.|++|++...   ...|.+|. ++|..-..|... .
T Consensus       224 FAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~  301 (928)
T PF04762_consen  224 FAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFD  301 (928)
T ss_pred             EEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCC
Confidence            998764   2   47999995 47655554444444567899999999988764   34566776 445444444322 1


Q ss_pred             CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-Cc--EEEEecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEe
Q psy8448         278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQ--IVRSLSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRL  353 (482)
Q Consensus       278 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~--~~~~~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~  353 (482)
                      .....|..+.|++++ .+|++...|. |.+|... ..  .-+.+...  ....+..+.|+|.. ..|...+.+|.+..++
T Consensus       302 ~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  302 PEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             CCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence            456789999999999 7888877555 9999883 22  11222211  13344559999964 4577888878888777


Q ss_pred             e
Q psy8448         354 I  354 (482)
Q Consensus       354 ~  354 (482)
                      +
T Consensus       378 ~  378 (928)
T PF04762_consen  378 F  378 (928)
T ss_pred             E
Confidence            6

>KOG2041|consensus

Probab=99.54  E-value=1e-12  Score=121.32  Aligned_cols=244  Identities=15%  Similarity=0.307  Sum_probs=176.8

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeec-------cccccccccccccccEEEEEEcCCCCEEEEEeC
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD-------LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ  170 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~-------~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~  170 (482)
                      .......|+.|+....++|+|+.||.+++..+.+...-..       ....-.+.+.||.+.|..+.|+.+.+.|-+...
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            4456789999999999999999999999998875432211       122334578899999999999999999999999


Q ss_pred             CCcEEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE-EEeeccccceeEEEEcCCCC
Q psy8448         171 SGKVKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML-KEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~l~~~~~~~  248 (482)
                      +|.|.+|-+-.+.....+. ....+-|.+++|+.+|+.|+....||.|.+=.++..+.. +.++  ......+.|++|.+
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~  169 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLE  169 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHH
Confidence            9999999998876543332 234566899999999999999999999998887654432 1222  22345789999999


Q ss_pred             EEEEEeCCCcEEEEECCCCc-------e-eeeeeccCCCccceeEEEEc--------CCCCCEEEEEeCCCeEEEEEc-C
Q psy8448         249 SVLSASSDGTVKMWNLKTTE-------C-TSTFKSLGASDIAVNSIHLL--------PKNTEHFVVCNKTNTVVIMNM-Q  311 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~-------~-~~~~~~~~~~~~~v~~i~~~--------~~~~~~l~~~~~d~~i~i~d~-~  311 (482)
                      .++.+-.+|.+.+||....-       + +............+..+.|.        |+. ..++++...|.+.+..- +
T Consensus       170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcC
Confidence            88888889999999975321       1 11111111222335566664        344 68999999999988776 3


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV  348 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~  348 (482)
                      ......+..    .-.+....|+++|..|++++.+..
T Consensus       249 D~~Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~d  281 (1189)
T KOG2041|consen  249 DPEPVVVDT----GMKIVGAKWNHNGAVLAVCGNDSD  281 (1189)
T ss_pred             CCCCeEEec----ccEeecceecCCCcEEEEccCccc
Confidence            333333332    356788999999999999987654

>KOG0974|consensus

Probab=99.54  E-value=5.5e-13  Score=128.31  Aligned_cols=199  Identities=14%  Similarity=0.141  Sum_probs=159.5

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCC---eEEEEEccCCCEEEEEECCCeEEEEeCCCCceE
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLG---VTCIQFSRDNSQILTASFDTYVRIHGLKSGKML  228 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  228 (482)
                      .|....+..+...++.++.+..+.+||...+.....+.......   ..-+.++++.-++++|+.-+.|.+|+....+.-
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p  168 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP  168 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence            34444444456778888889999999998887776653221111   122334566678999999999999998744444


Q ss_pred             EEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448         229 KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM  308 (482)
Q Consensus       229 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~  308 (482)
                      ..+.+|.+.|.++.++.+|+++++.++|..+++|++++.+.....  .-+|...+..+.+.|.   .+++++.|.+.++|
T Consensus       169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~--~fgHsaRvw~~~~~~n---~i~t~gedctcrvW  243 (967)
T KOG0974|consen  169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT--GFGHSARVWACCFLPN---RIITVGEDCTCRVW  243 (967)
T ss_pred             ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc--cccccceeEEEEeccc---eeEEeccceEEEEE
Confidence            468899999999999999999999999999999999998766511  1189999999999995   89999999999999


Q ss_pred             EcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhh
Q psy8448         309 NMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       309 d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                      +.++..+..+..|.  ...+..++..++...+++++.|+.+++|++...
T Consensus       244 ~~~~~~l~~y~~h~--g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  244 GVNGTQLEVYDEHS--GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ecccceehhhhhhh--hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            99999888777765  567899999999999999999999999987644

>KOG0280|consensus

Probab=99.54  E-value=2e-12  Score=106.97  Aligned_cols=208  Identities=12%  Similarity=0.195  Sum_probs=149.7

Q ss_pred             CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC---CCC-EEEEEeCCCcEEEEEcCCCeEeEEeeccc---
Q psy8448         120 VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR---DSE-MLASGSQSGKVKIWKIATGQCLRKLEKAH---  192 (482)
Q Consensus       120 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~---~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  192 (482)
                      ..|.+.+|++...+....-.....     ..+.+..+.|..   ++. .++-+-.+|.|.++..........+..-.   
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~-----dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k  118 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCT-----DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK  118 (339)
T ss_pred             eccceEEEeecccccCccceeeee-----cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh
Confidence            347799999887765441111111     135677777865   444 45666778999999876555444442111   


Q ss_pred             --CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce--EEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q psy8448         193 --SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM--LKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTT  267 (482)
Q Consensus       193 --~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~  267 (482)
                        .....++.|++.+..++++..+|.+.+.+......  ++.++.|.-.+....|+. +.+.+.+|+.|+.+..||++..
T Consensus       119 i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  119 ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence              11245778999899999999999998766655543  347889999999999986 4468889999999999999943


Q ss_pred             ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         268 ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       268 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      . ...+.....|...|.+|.-+|..+..+++|+.|..|++||.+  ++++..-..    .+.|+.+.++|.-
T Consensus       199 ~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v----~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  199 K-TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV----GGGVWRIKHHPEI  265 (339)
T ss_pred             c-ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc----ccceEEEEecchh
Confidence            3 233443447888999999999888999999999999999995  565554443    4778999998864

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.3e-11  Score=117.58  Aligned_cols=210  Identities=15%  Similarity=0.119  Sum_probs=135.2

Q ss_pred             eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEeEEeecccCCCeEEE
Q psy8448         123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---GKVKIWKIATGQCLRKLEKAHSLGVTCI  199 (482)
Q Consensus       123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i  199 (482)
                      .|.++|...+.... +.        .+...+....|+|+|+.|+..+.+   ..|.+||+.+++.....  .....+...
T Consensus       180 ~l~~~d~~g~~~~~-l~--------~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--~~~g~~~~~  248 (430)
T PRK00178        180 TLQRSDYDGARAVT-LL--------QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--NFEGLNGAP  248 (430)
T ss_pred             EEEEECCCCCCceE-Ee--------cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--CCCCCcCCe
Confidence            47777876544222 21        124678999999999999887643   36899999887654322  233445678


Q ss_pred             EEccCCCEEEE-EECCC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeeee
Q psy8448         200 QFSRDNSQILT-ASFDT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-DG--TVKMWNLKTTECTSTF  273 (482)
Q Consensus       200 ~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~  273 (482)
                      +|+|+|+.|+. ...+|  .|+++|+.+++.. .+..+........|+||++.|+..+. +|  .|.++|+.+++.....
T Consensus       249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt  327 (430)
T PRK00178        249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT  327 (430)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            99999998874 44444  6888999887653 34445556677899999998876654 33  5777888777643322


Q ss_pred             eccCCCccceeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC-cEEE
Q psy8448         274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTN--TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED-MVLV  350 (482)
Q Consensus       274 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d-g~i~  350 (482)
                      .    .........|+|++..++++...++  .|.++|+.+.....+....    ......|+|||+.++..+.+ |.-.
T Consensus       328 ~----~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~----~~~~p~~spdg~~i~~~~~~~g~~~  399 (430)
T PRK00178        328 F----VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS----LDESPSVAPNGTMLIYATRQQGRGV  399 (430)
T ss_pred             c----CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC----CCCCceECCCCCEEEEEEecCCceE
Confidence            1    1223345789999944444443343  5788888544445444321    11245899999999876653 4444


Q ss_pred             EE
Q psy8448         351 VR  352 (482)
Q Consensus       351 iw  352 (482)
                      +|
T Consensus       400 l~  401 (430)
T PRK00178        400 LM  401 (430)
T ss_pred             EE
Confidence            33

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.6e-11  Score=116.52  Aligned_cols=208  Identities=15%  Similarity=0.135  Sum_probs=130.2

Q ss_pred             eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEeEEeecccCCCeEEE
Q psy8448         123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---GKVKIWKIATGQCLRKLEKAHSLGVTCI  199 (482)
Q Consensus       123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i  199 (482)
                      .|.++|....... .+.        .+...+....|+|||+.|+..+.+   ..|.+||+.+++.....  .........
T Consensus       199 ~l~i~d~dG~~~~-~l~--------~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g~~~~~  267 (448)
T PRK04792        199 QLMIADYDGYNEQ-MLL--------RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT--SFPGINGAP  267 (448)
T ss_pred             EEEEEeCCCCCce-Eee--------cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec--CCCCCcCCe
Confidence            5677776544322 111        124678899999999999887543   25888999887653322  223334578


Q ss_pred             EEccCCCEEEE-EECCC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeeee
Q psy8448         200 QFSRDNSQILT-ASFDT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-DG--TVKMWNLKTTECTSTF  273 (482)
Q Consensus       200 ~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~  273 (482)
                      +|+|||+.|+. ...++  .|+++|+.+++. ..+..+.......+|+||++.|+..+. ++  .|.++|+.+++.... 
T Consensus       268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-  345 (448)
T PRK04792        268 RFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-  345 (448)
T ss_pred             eECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-
Confidence            99999998875 45556  488889887764 344445556678899999998876654 33  467778877764332 


Q ss_pred             eccCCCccceeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC-CcEEE
Q psy8448         274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTN--TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE-DMVLV  350 (482)
Q Consensus       274 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~-dg~i~  350 (482)
                      .   ..........|+|+|..++++...++  .|.++|+.+.....+....    ......|+|||+.|+..+. +|.-.
T Consensus       346 t---~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~  418 (448)
T PRK04792        346 T---FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR----LDESPSVAPNGTMVIYSTTYQGKQV  418 (448)
T ss_pred             e---cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC----CCCCceECCCCCEEEEEEecCCceE
Confidence            2   11222345789999954444444445  4555677544444444321    1124579999998886554 44433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=8.1e-12  Score=117.54  Aligned_cols=223  Identities=14%  Similarity=0.073  Sum_probs=140.5

Q ss_pred             CCCcEEEEEEcCCCCEEE---EEeCC--CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-CC
Q psy8448          99 SKSHVECARFSPDGQYLI---TGSVD--GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-SG  172 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~---s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-dg  172 (482)
                      ....+.+-+|||||+.++   +...+  ..|.+.++.+++.......         .......+|+|||+.|+..+. +|
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---------~g~~~~p~wSPDG~~Laf~s~~~g  253 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---------QGNQLMPTFSPRKKLLAFISDRYG  253 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---------CCCccceEECCCCCEEEEEECCCC
Confidence            455677889999997532   33333  3688889887764433222         234556899999998887653 22


Q ss_pred             ----cEEEEEcCCC--eEeEEeecccCCCeEEEEEccCCCEEEEEE-CCCe--EEEEeCCC-CceEEEeeccccceeEEE
Q psy8448         173 ----KVKIWKIATG--QCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTY--VRIHGLKS-GKMLKEFRGHSSFVNDIT  242 (482)
Q Consensus       173 ----~i~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~~~~~~i~~l~  242 (482)
                          .+..|++..+  .....+...........+|+|||+.|+..+ .+|.  |+++++.. +.....+..+...+....
T Consensus       254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~  333 (428)
T PRK01029        254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA  333 (428)
T ss_pred             CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcccee
Confidence                3444676653  122333222223446789999999888665 4564  55555542 233444544555677899


Q ss_pred             EcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC--CCeEEEEEcCCcEEEE
Q psy8448         243 FTADGHSVLSASSD---GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK--TNTVVIMNMQGQIVRS  317 (482)
Q Consensus       243 ~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~  317 (482)
                      |+|||+.|+..+.+   ..|.+||+.+++.....    .....+....|+|+|..+++++..  ...|.++|+.+.....
T Consensus       334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~  409 (428)
T PRK01029        334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK  409 (428)
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            99999998876543   46999999988764332    223456778999999544445443  3568888886655555


Q ss_pred             ecCCcccCcCEEEEEEcCCC
Q psy8448         318 LSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g  337 (482)
                      +...   .+.+...+|+|-.
T Consensus       410 Lt~~---~g~~~~p~Ws~~~  426 (428)
T PRK01029        410 IVIG---SGEKRFPSWGAFP  426 (428)
T ss_pred             eecC---CCcccCceecCCC
Confidence            5433   4456677888753

>KOG1409|consensus

Probab=99.51  E-value=4.8e-12  Score=107.05  Aligned_cols=242  Identities=20%  Similarity=0.285  Sum_probs=176.4

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecC-CCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFT-TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      .||.+.|++...-|...-+++.+.|.+++||--. .++.-..+...       ...+++++.+.++...|+.|-..|++.
T Consensus        21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-------mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-------MPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-------CCCCceEeeeeccceEEEEEEecceEE
Confidence            4999999999999988889999999999999543 33322222111       257899999999999999999999999


Q ss_pred             EEEcCC----CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448         176 IWKIAT----GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       176 iwd~~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      -+.+..    ...++.+ ..|...+..+.|+....++++.+.|..+.---.+.+..+..+. .....+++.+.-.  +..
T Consensus        94 efs~sedfnkm~~~r~~-~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~f  169 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDY-LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAF  169 (404)
T ss_pred             EEEhhhhhhhcchhhhh-hhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEE
Confidence            886542    3344444 6799999999999888999999999877655555554433222 1111222223222  555


Q ss_pred             EEeCCCcEEEEECCC--CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcE--EEEecCCcccCcC
Q psy8448         252 SASSDGTVKMWNLKT--TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI--VRSLSSGKREGGD  327 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~  327 (482)
                      .|...|.|.+-.+..  ...+.++.   +|...+.++.|.|.. .++++|..|..+.+||+-++.  ...+..+   ...
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~---~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh---~~k  242 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFN---GHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGH---NDK  242 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEc---CcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccc---hhh
Confidence            666777776655543  34455555   899999999999987 899999999999999995433  3333333   667


Q ss_pred             EEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         328 FLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       328 v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      |..+..-+--+.+++++.||.|.+|+++.
T Consensus       243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  243 VQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            77788878888999999999999998873

>KOG2321|consensus

Probab=99.51  E-value=3.6e-12  Score=114.94  Aligned_cols=207  Identities=15%  Similarity=0.207  Sum_probs=145.4

Q ss_pred             cccccEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCeEeEE---------ee------------------ccc-------
Q psy8448         148 LMEEAVMSLAYSRDSEMLAS-GSQSGKVKIWKIATGQCLRK---------LE------------------KAH-------  192 (482)
Q Consensus       148 ~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~---------~~------------------~~~-------  192 (482)
                      .|....+.+..+|||+|+++ |..-..|++||+.+-.....         +.                  .-|       
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            35678899999999998655 55788999999865321110         00                  000       


Q ss_pred             ----CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy8448         193 ----SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE  268 (482)
Q Consensus       193 ----~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~  268 (482)
                          ...-..++++.-..-|++++....|+-++++.|.-+..+....+.++++..++...+|++|+.+|.|..||.+...
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence                0112334444322335555557789999999999998888888999999999999999999999999999999877


Q ss_pred             eeeeeeccC---CCc-----cceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC--C
Q psy8448         269 CTSTFKSLG---ASD-----IAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG--E  338 (482)
Q Consensus       269 ~~~~~~~~~---~~~-----~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g--~  338 (482)
                      .+..+....   .+.     ..|+++.|..+| -.+++|+..|.+.|||++.........| ....+|..+.|.+.+  +
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh-~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDH-GYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeeccc-CCccceeeecccccCCCc
Confidence            665554211   122     349999999987 8899999999999999954433333333 237789999997763  3


Q ss_pred             EEEEEeCCcEEEEEeehhhhhhhcccccceeeeeccc
Q psy8448         339 WIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETG  375 (482)
Q Consensus       339 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  375 (482)
                      .|+ ..+...++                  +|+..+|
T Consensus       287 ~v~-S~Dk~~~k------------------iWd~~~G  304 (703)
T KOG2321|consen  287 KVV-SMDKRILK------------------IWDECTG  304 (703)
T ss_pred             eEE-ecchHHhh------------------hcccccC
Confidence            333 33344555                  7888888

>KOG0280|consensus

Probab=99.51  E-value=4.2e-12  Score=105.17  Aligned_cols=266  Identities=14%  Similarity=0.122  Sum_probs=175.1

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcC---CCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP---DGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM  149 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h  149 (482)
                      .|+..+++........ +. .+..-.++.+..+.|..   +|. .|+-+..+|.|.++..........+..-....+  .
T Consensus        45 ~Gkl~Lys~~d~~~~~-l~-~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki--~  120 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSP-LD-TLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI--S  120 (339)
T ss_pred             ccceEEEeecccccCc-cc-eeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh--h
Confidence            4444555544443332 11 22223456788888865   555 455667789999998665443333222211111  0


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeE--EeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCC-C
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR--KLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKS-G  225 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~-~  225 (482)
                      .....++.|++.+..++++..+|.+.+-+........  .+ +.|..++....|+. +.+.+.+|+.|+.+..||+|. +
T Consensus       121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~  199 (339)
T KOG0280|consen  121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK  199 (339)
T ss_pred             heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence            1236688899999999999999999966654443322  44 68999999999987 446788999999999999993 3


Q ss_pred             ceEEE-eeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC
Q psy8448         226 KMLKE-FRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT  302 (482)
Q Consensus       226 ~~~~~-~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  302 (482)
                      +.+.. .+-|...|.+|.-+| .+.++++|+.|-.|++||.++ ++++..-    .-.+.|..+.++|.-...+++++.-
T Consensus       200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----ccccceEEEEecchhhhHHHHHHHh
Confidence            44433 456888899998886 578999999999999999995 5555544    3347899999999775566677777


Q ss_pred             CeEEEEEcCCcEEE---EecCCcccCcCEEEEEEcCCCCEEEEEe-CCcE
Q psy8448         303 NTVVIMNMQGQIVR---SLSSGKREGGDFLCCTTSPRGEWIYCVG-EDMV  348 (482)
Q Consensus       303 ~~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~  348 (482)
                      +-.++-+.+.+...   .+.....|.+-...-.|.....+|++++ .|..
T Consensus       276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~  325 (339)
T KOG0280|consen  276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK  325 (339)
T ss_pred             cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc
Confidence            77788887533333   3444444444445555544445677755 3444

>KOG2314|consensus

Probab=99.50  E-value=5.7e-12  Score=113.17  Aligned_cols=231  Identities=18%  Similarity=0.228  Sum_probs=144.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-----------C
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-----------S  171 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-----------d  171 (482)
                      =+-+.|||.|.||+|-...| |.+|--.+-...+.+..          ..|.-+.|||..+||++-+.           .
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~H----------p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~  281 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYH----------PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG  281 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccC----------CCceeeecCCccceEEEecCCccccCcccCCC
Confidence            46789999999999998777 99997665554444432          35889999999999999652           1


Q ss_pred             CcEEEEEcCCCeEeEEeecc--cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         172 GKVKIWKIATGQCLRKLEKA--HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      ..+.|||+.+|...+.+...  ....-.-..|+.|++++|.-.. ..|.||+..+..++..-.-.-..|....|+|.++.
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l  360 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL  360 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcce
Confidence            57999999999988887431  1112234689999999987765 56888887654333221122334556666666555


Q ss_pred             EEEEeCC-----Cc----------------------------------------------------EEEEECCCCce-ee
Q psy8448         250 VLSASSD-----GT----------------------------------------------------VKMWNLKTTEC-TS  271 (482)
Q Consensus       250 l~~~~~d-----g~----------------------------------------------------i~i~d~~~~~~-~~  271 (482)
                      |+-=+..     ..                                                    +.|+.++.... +.
T Consensus       361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve  440 (698)
T KOG2314|consen  361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE  440 (698)
T ss_pred             EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence            5421110     11                                                    11222221110 00


Q ss_pred             eeeccCCCccceeEEEEcCCCCCEEEEEeC--CCeEEEEEcC--Cc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448         272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNK--TNTVVIMNMQ--GQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       272 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--d~~i~i~d~~--~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      ..    .....|...+|-|.|.++.+..+.  ..++.+|..+  ..   .+..+.     ....+.+.|+|.|++++.+.
T Consensus       441 ~v----elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-----k~~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  441 VV----ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-----KKFANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             ee----ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-----ccccceEEEcCCCcEEEEEE
Confidence            00    224567788999999555444443  3578888874  22   222222     34457899999999998764


Q ss_pred             ---CCcEEEEEee
Q psy8448         345 ---EDMVLVVRLI  354 (482)
Q Consensus       345 ---~dg~i~iw~~  354 (482)
                         ..|.+.++|.
T Consensus       512 l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  512 LVSRRGDLEFYDT  524 (698)
T ss_pred             ecccccceEEEec
Confidence               4677774443

>KOG2041|consensus

Probab=99.49  E-value=2.5e-12  Score=118.82  Aligned_cols=293  Identities=15%  Similarity=0.195  Sum_probs=206.9

Q ss_pred             HhhhhhccCCCCCCceeeccCC---cccccccccc---ccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy8448          54 ALKWQQHQGLLPPGTTIDLFRG---KAAMKDQEEE---KYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVW  127 (482)
Q Consensus        54 ~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw  127 (482)
                      ...|+...|+++.|+.......   .....+....   ....-.+.+.+.||+..|.-+.|+.+.+.|-+...+|.|.+|
T Consensus        19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW   98 (1189)
T KOG2041|consen   19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW   98 (1189)
T ss_pred             EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence            4679999999987775322211   1111111111   112233446677999999999999999999999999999999


Q ss_pred             ecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCE
Q psy8448         128 NFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQ  207 (482)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  207 (482)
                      -+-+|.-........      ..+.|.+++|+.+|..++....||.|.+=.++.++...+-.  ...-...+.|++|.+.
T Consensus        99 mlykgsW~EEMiNnR------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   99 MLYKGSWCEEMINNR------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLEQ  170 (1189)
T ss_pred             eeecccHHHHHhhCc------CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc--chheccceeecccHHH
Confidence            998887544333222      14679999999999999999999999888876554332211  1222457889999999


Q ss_pred             EEEEECCCeEEEEeCCCCc-------eEEE----eeccccceeEEEEc--------CCCCEEEEEeCCCcEEEEECCCCc
Q psy8448         208 ILTASFDTYVRIHGLKSGK-------MLKE----FRGHSSFVNDITFT--------ADGHSVLSASSDGTVKMWNLKTTE  268 (482)
Q Consensus       208 l~~~~~dg~i~i~d~~~~~-------~~~~----~~~~~~~i~~l~~~--------~~~~~l~~~~~dg~i~i~d~~~~~  268 (482)
                      ++.+-.+|.+.+||.+..-       +...    +......|..+.|.        |+...|+++-.+|.+.+..-.+..
T Consensus       171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~  250 (1189)
T KOG2041|consen  171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP  250 (1189)
T ss_pred             HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence            9999999999999975321       1111    12223346667764        577889999999999988766654


Q ss_pred             eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC---------CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCE
Q psy8448         269 CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT---------NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEW  339 (482)
Q Consensus       269 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~  339 (482)
                      ....+    .....+..+.|+++| ..+++++.+         +.|.+|..-|..+.++...   ...|+.++|-..|-.
T Consensus       251 ~Pvv~----dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvp---g~~It~lsWEg~gLr  322 (1189)
T KOG2041|consen  251 EPVVV----DTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVP---GSCITGLSWEGTGLR  322 (1189)
T ss_pred             CCeEE----ecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEecC---CceeeeeEEcCCceE
Confidence            44444    334678899999999 788887754         4688888888888888876   788999999877766


Q ss_pred             EEEEeCCcEEEEEeehhhhhhhcc
Q psy8448         340 IYCVGEDMVLVVRLIQQYLKESNL  363 (482)
Q Consensus       340 l~~~~~dg~i~iw~~~~~~~~~~~  363 (482)
                      ++. .-|+.|++-.++...+....
T Consensus       323 iA~-AvdsfiyfanIRP~ykWgy~  345 (1189)
T KOG2041|consen  323 IAI-AVDSFIYFANIRPEYKWGYI  345 (1189)
T ss_pred             EEE-EecceEEEEeecccceEEEe
Confidence            654 45788888777755554443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.47  E-value=2e-10  Score=101.55  Aligned_cols=222  Identities=14%  Similarity=0.193  Sum_probs=158.8

Q ss_pred             cCCCCEEEEEeCCCeEEEEecCCCceeeccccc-cc---cccccccccEEEEE-EcC-CCCEEEEEeCCCcEEEEEcCCC
Q psy8448         109 SPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ-AQ---DNFMLMEEAVMSLA-YSR-DSEMLASGSQSGKVKIWKIATG  182 (482)
Q Consensus       109 s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~---~~~~~h~~~i~~l~-~~~-~~~~l~~~~~dg~i~iwd~~~~  182 (482)
                      +.||+.++.. ..|.|.+||..+..+... ... +.   ......-.+..-+. |++ +|++++..+. |...+.+...+
T Consensus       275 nsDGkrIvFq-~~GdIylydP~td~lekl-dI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~  351 (668)
T COG4946         275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKL-DIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG  351 (668)
T ss_pred             CCCCcEEEEe-cCCcEEEeCCCcCcceee-ecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence            4577777754 357899999887664332 111 10   01000111222222 444 6888888875 67888876655


Q ss_pred             eEeEEeecccCCCeEEEEEccCCCEEEEEECCC-eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEE
Q psy8448         183 QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM  261 (482)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i  261 (482)
                      -.++   .++...|.-..+..+++-++.|..|| .+-|+|.++++. +.+...-+.|.++..+++|+.++++.....+.+
T Consensus       352 ~~iq---v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v  427 (668)
T COG4946         352 YSIQ---VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV  427 (668)
T ss_pred             eeEE---cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence            4443   45777798888888888899999999 899999987764 455667788999999999999999999999999


Q ss_pred             EECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC----eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         262 WNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN----TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       262 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      +|+.++.....-+   ....-|+.+.|+|++ ++++-+--+|    .|+++|+.+..+.......   ..=.+-+|.||+
T Consensus       428 ididngnv~~idk---S~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t---a~DfsPaFD~d~  500 (668)
T COG4946         428 IDIDNGNVRLIDK---SEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT---AYDFSPAFDPDG  500 (668)
T ss_pred             EEecCCCeeEecc---cccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEEEecCCc---ccccCcccCCCC
Confidence            9999998654433   556789999999998 7777765554    6899999876666665542   233567899999


Q ss_pred             CEEEEEe
Q psy8448         338 EWIYCVG  344 (482)
Q Consensus       338 ~~l~~~~  344 (482)
                      ++|+.-+
T Consensus       501 ryLYfLs  507 (668)
T COG4946         501 RYLYFLS  507 (668)
T ss_pred             cEEEEEe
Confidence            9988654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=4.2e-11  Score=112.73  Aligned_cols=206  Identities=10%  Similarity=0.088  Sum_probs=124.9

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE---EEeCC--CcEEEEEcCCCeEeEEeecccCCCe
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA---SGSQS--GKVKIWKIATGQCLRKLEKAHSLGV  196 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~---~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v  196 (482)
                      +.|.+.|...+.... +..        ....+..-.|+|||+.++   +...+  ..|.+.++.+++.....  ......
T Consensus       165 ~~l~~~d~dG~~~~~-lt~--------~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~  233 (428)
T PRK01029        165 GELWSVDYDGQNLRP-LTQ--------EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQ  233 (428)
T ss_pred             ceEEEEcCCCCCceE-ccc--------CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCc
Confidence            367777766544322 221        134567789999997532   33333  35788888877654433  234445


Q ss_pred             EEEEEccCCCEEEEEEC-----CCeEEEEeCCCC---ceEEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEE--ECC
Q psy8448         197 TCIQFSRDNSQILTASF-----DTYVRIHGLKSG---KMLKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMW--NLK  265 (482)
Q Consensus       197 ~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~--d~~  265 (482)
                      ...+|+|||+.|+..+.     +..+..|++..+   +...............+|+|||+.|+..+ .+|...+|  ++.
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence            67899999998887653     223444777653   33333333333456789999999888765 45655555  443


Q ss_pred             C-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEE
Q psy8448         266 T-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT--NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYC  342 (482)
Q Consensus       266 ~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~  342 (482)
                      . +.....+.   .....+....|+|+|..++++...+  ..|.+||+.+.....+...   ...+....|+|||+.|+.
T Consensus       314 ~~g~~~~~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f  387 (428)
T PRK01029        314 PEGQSPRLLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVY  387 (428)
T ss_pred             ccccceEEec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEE
Confidence            2 22233332   3344567889999994444444333  4689999965555555433   234567899999998885


Q ss_pred             Ee
Q psy8448         343 VG  344 (482)
Q Consensus       343 ~~  344 (482)
                      .+
T Consensus       388 ~~  389 (428)
T PRK01029        388 SA  389 (428)
T ss_pred             EE
Confidence            44

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.47  E-value=4.4e-11  Score=106.58  Aligned_cols=238  Identities=16%  Similarity=0.180  Sum_probs=162.4

Q ss_pred             CcEEEEEEcCCCCEEEEEeCC---------------CeEEEEecCCCceeeccccccccccccccccEE-EEEEcCCCCE
Q psy8448         101 SHVECARFSPDGQYLITGSVD---------------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM-SLAYSRDSEM  164 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~d---------------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~-~l~~~~~~~~  164 (482)
                      ..|..+.|||.+++|.+=+..               ..+.+||+.++.++..+......      .-.. -+.|+.+.++
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~------~~~Wp~~k~s~~D~y  145 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP------YLGWPVLKFSIDDKY  145 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc------ccccceeeeeecchh
Confidence            469999999999999985432               35999999999998887766432      1133 6778888887


Q ss_pred             EEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC--CEEEE-----EECCCeEEEEeCCCCceEEEeeccccc
Q psy8448         165 LASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN--SQILT-----ASFDTYVRIHGLKSGKMLKEFRGHSSF  237 (482)
Q Consensus       165 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~  237 (482)
                      +|-.. ...+.|+++..+-....+.......|....|+|.+  ..|+.     ....+.+++|.+..+..+.+..-....
T Consensus       146 ~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~  224 (561)
T COG5354         146 VARVV-GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS  224 (561)
T ss_pred             hhhhc-cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec
Confidence            76653 34799999732222222212234568888999953  33443     356778999999877766554433334


Q ss_pred             eeEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEE-EeCCCeE
Q psy8448         238 VNDITFTADGHSVLSAS-----------SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVV-CNKTNTV  305 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~-~~~d~~i  305 (482)
                      =..+.|.+.|++|++-.           .+..+.++++....+.-..    ...++|...+|.|.+.++.++ |..+-.+
T Consensus       225 ~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~  300 (561)
T COG5354         225 GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK----DLKDPVHDFTWEPLSSRFAVISGYMPASV  300 (561)
T ss_pred             ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec----cccccceeeeecccCCceeEEecccccce
Confidence            45788999998876421           1345888888743322221    457899999999998544433 3578899


Q ss_pred             EEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC---cEEEEEee
Q psy8448         306 VIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED---MVLVVRLI  354 (482)
Q Consensus       306 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d---g~i~iw~~  354 (482)
                      .++|++++....+..     ..-..+.|+|.+++++.++-|   |.+.+|+.
T Consensus       301 s~~~lr~Nl~~~~Pe-----~~rNT~~fsp~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         301 SVFDLRGNLRFYFPE-----QKRNTIFFSPHERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             eecccccceEEecCC-----cccccccccCcccEEEEecCCccccceEEecc
Confidence            999999886666553     334678999999999987765   56775543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=5.5e-10  Score=96.01  Aligned_cols=248  Identities=13%  Similarity=0.222  Sum_probs=169.6

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEecCC--CceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-C
Q psy8448          98 GSKSHVECARFSPDGQYLITGSV---DGFIEVWNFTT--GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-S  171 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-d  171 (482)
                      .+.+.++-|+|+|+++.|.++..   +|.|.-|.++.  |++...-.....      ..+.+.+++++++++++++.. .
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~------g~~p~yvsvd~~g~~vf~AnY~~  110 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP------GSPPCYVSVDEDGRFVFVANYHS  110 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC------CCCCeEEEECCCCCEEEEEEccC
Confidence            67788999999999999988754   47788887764  443321111110      234488999999999999874 5


Q ss_pred             CcEEEEEcCC-CeEeEEe-ecccCCC----------eEEEEEccCCCEEEEEECC-CeEEEEeCCCCceEE----Eeecc
Q psy8448         172 GKVKIWKIAT-GQCLRKL-EKAHSLG----------VTCIQFSRDNSQILTASFD-TYVRIHGLKSGKMLK----EFRGH  234 (482)
Q Consensus       172 g~i~iwd~~~-~~~~~~~-~~~~~~~----------v~~i~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~----~~~~~  234 (482)
                      |.|.++-++. |...... ...|.+.          +.+..+.|++++|++.... -.|.+|++..++...    .+ ..
T Consensus       111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~  189 (346)
T COG2706         111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KP  189 (346)
T ss_pred             ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CC
Confidence            8999999865 3322110 0124443          8889999999999887643 369999999776432    22 34


Q ss_pred             ccceeEEEEcCCCCEEEEEeC-CCcEEEEECCCC-ceeeeeeccC------CCccceeEEEEcCCCCCEEEEEe-CCCeE
Q psy8448         235 SSFVNDITFTADGHSVLSASS-DGTVKMWNLKTT-ECTSTFKSLG------ASDIAVNSIHLLPKNTEHFVVCN-KTNTV  305 (482)
Q Consensus       235 ~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~------~~~~~v~~i~~~~~~~~~l~~~~-~d~~i  305 (482)
                      ......|.|+|++++..+.++ +++|.+|..... .....++.+.      ........|.++++| ++|.++. ....|
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI  268 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSI  268 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeE
Confidence            566799999999998877665 889999998873 2222222211      234566789999999 5555554 44678


Q ss_pred             EEEEc--CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc-EEEEEe
Q psy8448         306 VIMNM--QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM-VLVVRL  353 (482)
Q Consensus       306 ~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg-~i~iw~  353 (482)
                      .+|.+  .+..+........+....+.+.+++.|++|+++.+++ .|.+|.
T Consensus       269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~  319 (346)
T COG2706         269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE  319 (346)
T ss_pred             EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence            88888  3455555444333344578899999999999888764 566553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.45  E-value=9.5e-10  Score=98.45  Aligned_cols=260  Identities=15%  Similarity=0.224  Sum_probs=159.0

Q ss_pred             cceeeecCCCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEecCCCceeeccccccccccccccccEEEEEEcC
Q psy8448          91 LSKQIKFGSKSHVECARFSPDGQYLITGSV----------DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR  160 (482)
Q Consensus        91 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~  160 (482)
                      ....+..|.....  + +||||+.|+.+..          +..|.+||..+.+....+.......+. .-.....++++|
T Consensus        39 v~g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-~~~~~~~~~ls~  114 (352)
T TIGR02658        39 VLGMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-VGTYPWMTSLTP  114 (352)
T ss_pred             EEEEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-ccCccceEEECC
Confidence            3344444544333  4 9999999877654          789999999999998887765321111 112345789999


Q ss_pred             CCCEEEEEe-C-CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC-CceE-EE---eec
Q psy8448         161 DSEMLASGS-Q-SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS-GKML-KE---FRG  233 (482)
Q Consensus       161 ~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~-~~---~~~  233 (482)
                      ||++|++.. . +..|.+.|+.+++.+..+..  .....-...+++ ..++ -+.||......+.+ ++.. ..   +..
T Consensus       115 dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~-~~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~  190 (352)
T TIGR02658       115 DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTAND-TFFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHP  190 (352)
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCC-ccEE-EeecCceEEEEecCCCceEEeeeeeecC
Confidence            999998876 3 68999999999999988843  222222222222 2222 22355444433322 2211 11   111


Q ss_pred             ccccee-EEEEcC-CCCEEEEEeCCCcEEEEECCCCc-----eeeeeecc----CCCccceeEEEEcCCCCCEEEEEe--
Q psy8448         234 HSSFVN-DITFTA-DGHSVLSASSDGTVKMWNLKTTE-----CTSTFKSL----GASDIAVNSIHLLPKNTEHFVVCN--  300 (482)
Q Consensus       234 ~~~~i~-~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~~~~--  300 (482)
                      ...++. .-.|.+ +++++.+... |.|.+.|+....     ....+...    .-....+.-++++|++..+++...  
T Consensus       191 ~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~  269 (352)
T TIGR02658       191 EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR  269 (352)
T ss_pred             CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence            000000 003455 7887777666 999999965432     22222110    012233445999999955555332  


Q ss_pred             -------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCC-EEEEEe-CCcEEEEEeehhhhhhhcccccceee
Q psy8448         301 -------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVG-EDMVLVVRLIQQYLKESNLMKTLQCL  370 (482)
Q Consensus       301 -------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~  370 (482)
                             ..+.|.++|. +++.+..+..    ...+..++++|||+ +|++.+ .++.|.                  ++
T Consensus       270 ~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~Vs------------------Vi  327 (352)
T TIGR02658       270 AKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLY------------------IF  327 (352)
T ss_pred             ccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEE------------------EE
Confidence                   2257999999 6777777775    34678999999999 888666 578899                  77


Q ss_pred             eecccceeecc
Q psy8448         371 QEETGVSLNTV  381 (482)
Q Consensus       371 ~~~~~~~~~~~  381 (482)
                      |..+++.+.++
T Consensus       328 D~~t~k~i~~i  338 (352)
T TIGR02658       328 DAETGKELSSV  338 (352)
T ss_pred             ECcCCeEEeee
Confidence            77777666655

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=7.2e-10  Score=95.28  Aligned_cols=225  Identities=16%  Similarity=0.182  Sum_probs=148.3

Q ss_pred             CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCC--CeEeEEee-cccCC
Q psy8448         121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---SGKVKIWKIAT--GQCLRKLE-KAHSL  194 (482)
Q Consensus       121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~~~~~~-~~~~~  194 (482)
                      ++-|++|++.+........     ......+.++-|+|+|+++.|.++-.   +|.|..|.+..  |+....-. .....
T Consensus        15 s~gI~v~~ld~~~g~l~~~-----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~   89 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLL-----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS   89 (346)
T ss_pred             CCceEEEEEeCcccccchh-----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence            4569999988433221111     11113567899999999999998864   47788887764  44322111 12233


Q ss_pred             CeEEEEEccCCCEEEEEECC-CeEEEEeCCC-CceEE--Eeeccccc----------eeEEEEcCCCCEEEEEeC-CCcE
Q psy8448         195 GVTCIQFSRDNSQILTASFD-TYVRIHGLKS-GKMLK--EFRGHSSF----------VNDITFTADGHSVLSASS-DGTV  259 (482)
Q Consensus       195 ~v~~i~~~~~~~~l~~~~~d-g~i~i~d~~~-~~~~~--~~~~~~~~----------i~~l~~~~~~~~l~~~~~-dg~i  259 (482)
                      +-+.+++++++++++++... |.|.++-++. |....  ....|.+.          +....+.|++++|++.+- --.|
T Consensus        90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri  169 (346)
T COG2706          90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI  169 (346)
T ss_pred             CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence            44889999999999988654 6899998865 33211  12224444          788999999999988764 2459


Q ss_pred             EEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC--cEEEEecCC------cccCcCEEEE
Q psy8448         260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG--QIVRSLSSG------KREGGDFLCC  331 (482)
Q Consensus       260 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~------~~~~~~v~~~  331 (482)
                      .+|++..+.....-...-.....-..|.|+|++.-..+++--+++|.+|..+.  ..+..+...      .........+
T Consensus       170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI  249 (346)
T COG2706         170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI  249 (346)
T ss_pred             EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence            99999977654332222234556789999999965566677899999999953  344443322      1124455678


Q ss_pred             EEcCCCCEEEEEeCC-cEEE
Q psy8448         332 TTSPRGEWIYCVGED-MVLV  350 (482)
Q Consensus       332 ~~~~~g~~l~~~~~d-g~i~  350 (482)
                      ..++||++|+++... ..|.
T Consensus       250 his~dGrFLYasNRg~dsI~  269 (346)
T COG2706         250 HISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             EECCCCCEEEEecCCCCeEE
Confidence            999999999987643 3444

>KOG0974|consensus

Probab=99.44  E-value=4.3e-12  Score=122.27  Aligned_cols=202  Identities=17%  Similarity=0.220  Sum_probs=156.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      .+.|....+.-..+.++.++.++.+.+||...+.....+.......+    ....-+-++++.-++++|+.-+.|.+|+.
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l----~~~~~~g~s~~~~~i~~gsv~~~iivW~~  162 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL----YSSLIIGDSAEELYIASGSVFGEIIVWKP  162 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEE----EeEEEEeccCcEEEEEeccccccEEEEec
Confidence            34455566666778889998899999999988776655544322110    12223345666778999999999999998


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE-EeeccccceeEEEEcCCCCEEEEEeCCCc
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK-EFRGHSSFVNDITFTADGHSVLSASSDGT  258 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~dg~  258 (482)
                      ........+ .+|.+.|.++.|+-+|.++++.++|..+++|++++.+... ..-+|...|..++|.|+  .+++++.|.+
T Consensus       163 ~~dn~p~~l-~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct  239 (967)
T KOG0974|consen  163 HEDNKPIRL-KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT  239 (967)
T ss_pred             cccCCccee-cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE
Confidence            744433334 7999999999999999999999999999999999988766 66689999999999988  8999999999


Q ss_pred             EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q psy8448         259 VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG  312 (482)
Q Consensus       259 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~  312 (482)
                      .++|+... .....+..  .....+..++..+.. ...++++.|+.+++|++.+
T Consensus       240 crvW~~~~-~~l~~y~~--h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  240 CRVWGVNG-TQLEVYDE--HSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEEeccc-ceehhhhh--hhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhc
Confidence            99997653 33344442  224568888888876 7899999999999999843

>KOG4190|consensus

Probab=99.44  E-value=8.2e-13  Score=118.56  Aligned_cols=273  Identities=12%  Similarity=0.226  Sum_probs=183.0

Q ss_pred             CCceeeccCCcccccccccccccc-ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc-eeeccccccc
Q psy8448          66 PGTTIDLFRGKAAMKDQEEEKYPT-QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGK-IRKDLKYQAQ  143 (482)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~  143 (482)
                      .|..+++|.............+.. ++.-+-..||+..|..++--.+.+-+++++.|++|++|.++... ...  ....+
T Consensus       700 kGn~lA~W~~ets~~e~dt~~ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~--tsaCQ  777 (1034)
T KOG4190|consen  700 KGNLLAVWCAETSAAECDTDNLNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG--TSACQ  777 (1034)
T ss_pred             ccchHHHHHhhhhHhhcCCcccccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc--cceee
Confidence            455666665555444443333332 23334455999999999888888899999999999999987421 111  11223


Q ss_pred             cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee-cccCCCeEEEEEcc--CCCEEEEE-ECCCeEEE
Q psy8448         144 DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE-KAHSLGVTCIQFSR--DNSQILTA-SFDTYVRI  219 (482)
Q Consensus       144 ~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~--~~~~l~~~-~~dg~i~i  219 (482)
                      -.+..|+.+|..+.|-.+.++++++  ||.|.+||.--++.+..+. ....+.+..+..-+  +...++.+ +...+|++
T Consensus       778 fTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl  855 (1034)
T KOG4190|consen  778 FTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL  855 (1034)
T ss_pred             eEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhee
Confidence            3455688999999999998888776  8899999988777665432 12223333344334  33344444 77889999


Q ss_pred             EeCCCCceEEEee-----ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCC
Q psy8448         220 HGLKSGKMLKEFR-----GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTE  294 (482)
Q Consensus       220 ~d~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  294 (482)
                      +|.+..+...+++     +....+.+++..+.|++++++-.+|.|.+.|.++|+.+..++   ..+-....++- |.. .
T Consensus       856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr---pmecdllqlaa-psd-q  930 (1034)
T KOG4190|consen  856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR---PMECDLLQLAA-PSD-Q  930 (1034)
T ss_pred             eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC---cccchhhhhcC-chh-H
Confidence            9999988766554     345668899999999999999999999999999999888887   33334444443 333 5


Q ss_pred             EEEEEeCCCeEEE-EEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         295 HFVVCNKTNTVVI-MNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       295 ~l~~~~~d~~i~i-~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      .++....|.++.+ |-. +|....+......+..     -.-.-|..|++......+.+|
T Consensus       931 ~L~~saldHslaVnWhaldgimh~q~kpppepah-----flqsvgpSLV~a~~Gn~lgVY  985 (1034)
T KOG4190|consen  931 ALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH-----FLQSVGPSLVTAQNGNILGVY  985 (1034)
T ss_pred             HHHhhcccceeEeeehhcCCeeeeccCCCCcchh-----hhhccCceeEEeccCcEEEEE
Confidence            7777778888888 876 4544444332211111     112236778888877778855

>KOG0309|consensus

Probab=99.43  E-value=2.7e-12  Score=119.02  Aligned_cols=234  Identities=17%  Similarity=0.241  Sum_probs=162.0

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCC--CEEEEEeCC
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS--EMLASGSQS  171 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~--~~l~~~~~d  171 (482)
                      ++...-.+++.++..+|.|+-+|.++.-| +.+-|+...-.....-.+..      .-.|-...|+|..  .+-++....
T Consensus        18 slsl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~t------pw~vad~qws~h~a~~~wiVsts~   90 (1081)
T KOG0309|consen   18 SLSLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHIT------PWQVADVQWSPHPAKPYWIVSTSN   90 (1081)
T ss_pred             eeEEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccC------cchhcceecccCCCCceeEEecCc
Confidence            33345577899999999999999998877 66667654321111111100      1245667787743  344444455


Q ss_pred             CcEEEEEcCCC--eEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCc-eEEEeeccccceeEEEEcCCC
Q psy8448         172 GKVKIWKIATG--QCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGK-MLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       172 g~i~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      ..-.+|++...  ..+.-+..+|...|+.+.|+|+. ..+++++.|-.+..||+++.. ++..+..-...-..++|+-..
T Consensus        91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~  170 (1081)
T KOG0309|consen   91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD  170 (1081)
T ss_pred             chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence            56678987532  33444447899999999999954 578899999999999999865 445555445556789999866


Q ss_pred             CEEEEEeCCCcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---EEEEecCCcc
Q psy8448         248 HSVLSASSDGTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ---IVRSLSSGKR  323 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~  323 (482)
                      ..+++.+....|++||++.+. +...++   +|...|+.+.|.......+.+++.|+++++||....   .-+.+..   
T Consensus       171 p~vlasshg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt---  244 (1081)
T KOG0309|consen  171 PNVLASSHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT---  244 (1081)
T ss_pred             cchhhhccCCceEEEeccCCCcceEEec---ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc---
Confidence            667777788889999999865 445555   678888999998776678899999999999998422   1222222   


Q ss_pred             cCcCEEEEEEcCCCCEEE
Q psy8448         324 EGGDFLCCTTSPRGEWIY  341 (482)
Q Consensus       324 ~~~~v~~~~~~~~g~~l~  341 (482)
                       ..++..-.+-|-|.-.+
T Consensus       245 -~~piw~~r~~Pfg~g~~  261 (1081)
T KOG0309|consen  245 -NFPIWRGRYLPFGEGYC  261 (1081)
T ss_pred             -cCcceeccccccCceeE
Confidence             56777777777665433

>KOG2315|consensus

Probab=99.42  E-value=1.4e-10  Score=104.78  Aligned_cols=230  Identities=15%  Similarity=0.243  Sum_probs=144.6

Q ss_pred             cEEEEEEcCCCCEEEEE-----eC-----CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448         102 HVECARFSPDGQYLITG-----SV-----DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~-----~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      .++++.|||.|++|.+=     ..     .-.+.+|+++++.....+....       +.. .+..|++|..+. +--..
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~-------Q~~-W~~qfs~dEsl~-arlv~  145 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM-------QNG-WVPQFSIDESLA-ARLVS  145 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhh-------hcC-cccccccchhhh-hhhhc
Confidence            78999999999999752     11     2357799999865544444332       122 577787776532 22234


Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC--EEEE-----EECCC-----------------------------
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS--QILT-----ASFDT-----------------------------  215 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~-----~~~dg-----------------------------  215 (482)
                      +.+.+|++.+.+....  .-|...|+.+.++|.+.  .+++     .+.-.                             
T Consensus       146 nev~f~~~~~f~~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm  223 (566)
T KOG2315|consen  146 NEVQFYDLGSFKTIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM  223 (566)
T ss_pred             ceEEEEecCCccceee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEE
Confidence            5677777654322211  12344455555554321  1111     11112                             


Q ss_pred             ----------------------------eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE--EeCCCcEEEEECC
Q psy8448         216 ----------------------------YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS--ASSDGTVKMWNLK  265 (482)
Q Consensus       216 ----------------------------~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~dg~i~i~d~~  265 (482)
                                                  .+++++++...+...+. ..++|.++.|+|+++.+++  |-.-..+.|||++
T Consensus       224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr  302 (566)
T KOG2315|consen  224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR  302 (566)
T ss_pred             EeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC
Confidence                                        34444444222222222 4789999999999988765  4456789999987


Q ss_pred             CCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC---CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEE
Q psy8448         266 TTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK---TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIY  341 (482)
Q Consensus       266 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~  341 (482)
                       +.++..+     .+++-+++-|+|.| ++++.++-   .|.|.+||. +.+.+..+..     ..-+-+.|+|||++++
T Consensus       303 -~~~v~df-----~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----~~tt~~eW~PdGe~fl  370 (566)
T KOG2315|consen  303 -GKPVFDF-----PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----ANTTVFEWSPDGEYFL  370 (566)
T ss_pred             -CCEeEeC-----CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhcccccc-----CCceEEEEcCCCcEEE
Confidence             4455554     35677899999999 66666554   488999999 5555555553     3346789999999999


Q ss_pred             EEeC------CcEEEEEeeh
Q psy8448         342 CVGE------DMVLVVRLIQ  355 (482)
Q Consensus       342 ~~~~------dg~i~iw~~~  355 (482)
                      +++.      |+.++||.+.
T Consensus       371 TATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  371 TATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EEeccccEEecCCeEEEEec
Confidence            8875      5778888776

>KOG1409|consensus

Probab=99.41  E-value=1.6e-11  Score=103.94  Aligned_cols=243  Identities=15%  Similarity=0.213  Sum_probs=178.6

Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI-ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG  221 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d  221 (482)
                      ...+.||.+.++....-|...-+++.+.|.++++|-- ..++.-..+......+++++.+.++...|++|-.+|++.-+.
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence            3455677888999888898888999999999999953 445555555445677899999999999999999999998886


Q ss_pred             CC----CCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEE
Q psy8448         222 LK----SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFV  297 (482)
Q Consensus       222 ~~----~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~  297 (482)
                      +.    .....+....|...+..+-|+....++++.+.|..+.---.+++..+..+...    ..-+++.+.-   .+.+
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~----~~~t~~~~d~---~~~f  169 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE----TPASALQFDA---LYAF  169 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee----ccCCCCceee---EEEE
Confidence            53    33445566679999999999998999999999987765555555443333211    0111111111   1445


Q ss_pred             EEeCCCeEEEEEc---CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecc
Q psy8448         298 VCNKTNTVVIMNM---QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEET  374 (482)
Q Consensus       298 ~~~~d~~i~i~d~---~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  374 (482)
                      .|...|.|..-.+   .-.++.++..+   ...+.+++|.|....|++|..|..+.+||+.                ...
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h---~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig----------------g~~  230 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGH---TGEVTCLKWDPGQRLLFSGASDHSVIMWDIG----------------GRK  230 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCc---ccceEEEEEcCCCcEEEeccccCceEEEecc----------------CCc
Confidence            5666677666555   23455555554   8899999999999999999999999966653                111


Q ss_pred             cceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceec
Q psy8448         375 GVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVH  454 (482)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  454 (482)
                      |                                .                             .+          .+.+|
T Consensus       231 g--------------------------------~-----------------------------~~----------el~gh  239 (404)
T KOG1409|consen  231 G--------------------------------T-----------------------------AY----------ELQGH  239 (404)
T ss_pred             c--------------------------------e-----------------------------ee----------eeccc
Confidence            1                                0                             22          67799


Q ss_pred             ccceeeccccCCcceEEEEecCceeecC
Q psy8448         455 EKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       455 ~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      .+.|..+...+.-+.|.+++.||.|.+|
T Consensus       240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w  267 (404)
T KOG1409|consen  240 NDKVQALSYAQHTRQLISCGEDGGIVVW  267 (404)
T ss_pred             hhhhhhhhhhhhheeeeeccCCCeEEEE
Confidence            9999999999999999999999999988

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.39  E-value=2.6e-09  Score=95.73  Aligned_cols=208  Identities=10%  Similarity=0.070  Sum_probs=125.2

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCeEeEEeecc
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----------SGKVKIWKIATGQCLRKLEKA  191 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~  191 (482)
                      ++|.+.|..+++.+..+....         ....+ ++||++.|+++..          +..|.+||..+.+.+..+..+
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~---------~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p   96 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF---------LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP   96 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC---------CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence            889999999999888777553         22234 9999998888765          679999999999999888532


Q ss_pred             cC------CCeEEEEEccCCCEEEEEE-C-CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         192 HS------LGVTCIQFSRDNSQILTAS-F-DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN  263 (482)
Q Consensus       192 ~~------~~v~~i~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d  263 (482)
                      ..      ..-..++++|||+++++.. . +..|.+.|+.+++.+.++.-.. ...-+..+++.. + +-+.||......
T Consensus        97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~-~~~~Dg~~~~v~  173 (352)
T TIGR02658        97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-F-MHCRDGSLAKVG  173 (352)
T ss_pred             CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCcc-E-EEeecCceEEEE
Confidence            21      2234789999999999876 3 6899999999999988877422 222222222222 1 223455544443


Q ss_pred             CCC-Ccee-eeeeccCCCccce-eEEEEcC-CCCCEEEEEeCCCeEEEEEcCCc------EEEEecCCc----ccCcCEE
Q psy8448         264 LKT-TECT-STFKSLGASDIAV-NSIHLLP-KNTEHFVVCNKTNTVVIMNMQGQ------IVRSLSSGK----REGGDFL  329 (482)
Q Consensus       264 ~~~-~~~~-~~~~~~~~~~~~v-~~i~~~~-~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~----~~~~~v~  329 (482)
                      +.. ++.. ...........++ ..-.+.+ ++ ..+++... |.|.+.|+.+.      ....+....    -..+.+.
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q  251 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ  251 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence            332 1111 1111000100000 0014455 55 66666555 99999996332      222221110    0122333


Q ss_pred             EEEEcCCCCEEEEEe
Q psy8448         330 CCTTSPRGEWIYCVG  344 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~  344 (482)
                      -++++++++.+++..
T Consensus       252 ~ia~~~dg~~lyV~~  266 (352)
T TIGR02658       252 QVAYHRARDRIYLLA  266 (352)
T ss_pred             eEEEcCCCCEEEEEe
Confidence            499999999988854

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.36  E-value=1.4e-09  Score=110.74  Aligned_cols=251  Identities=14%  Similarity=0.130  Sum_probs=168.4

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCcee------------------------eccccccc-----------
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIR------------------------KDLKYQAQ-----------  143 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~------------------------~~~~~~~~-----------  143 (482)
                      -...|.|++||||+..|+..+.++++.+.+-. .+.+                        ..+.....           
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            36789999999999999999989988887421 1111                        11111000           


Q ss_pred             ------cccccccccEEEEEEcCCCCEEEEEeC---C---CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEE
Q psy8448         144 ------DNFMLMEEAVMSLAYSRDSEMLASGSQ---S---GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA  211 (482)
Q Consensus       144 ------~~~~~h~~~i~~l~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  211 (482)
                            ..+. +.+.-..++|-.||.++|+.+.   .   ..++||+- +|...... ..-.+--.+++|.|.|.+||+.
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stS-E~v~gLe~~l~WrPsG~lIA~~  274 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTS-EPVDGLEGALSWRPSGNLIASS  274 (928)
T ss_pred             CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEecc-ccCCCccCCccCCCCCCEEEEE
Confidence                  1111 3456678999999999999874   2   57999994 46654444 2333445678999999999987


Q ss_pred             EC---CCeEEEEeCCCCceEEEee----ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcccee
Q psy8448         212 SF---DTYVRIHGLKSGKMLKEFR----GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVN  284 (482)
Q Consensus       212 ~~---dg~i~i~d~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  284 (482)
                      ..   ...|.+|. ++|-.-..|.    .....|..+.|++|+..|+....|. |.+|-..+..-..+....-.....+.
T Consensus       275 q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~  352 (928)
T PF04762_consen  275 QRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVN  352 (928)
T ss_pred             EEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCC
Confidence            64   34677777 4554433332    3456799999999999999877665 99999888653222211112334455


Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEEcC-----Cc--------EEEEecCC--------------------cccCcCEEEE
Q psy8448         285 SIHLLPKNTEHFVVCNKTNTVVIMNMQ-----GQ--------IVRSLSSG--------------------KREGGDFLCC  331 (482)
Q Consensus       285 ~i~~~~~~~~~l~~~~~d~~i~i~d~~-----~~--------~~~~~~~~--------------------~~~~~~v~~~  331 (482)
                      .+.|+|..+..|.+.+.+|.+..++..     +.        .+..+.+.                    -.-..+|.++
T Consensus       353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v  432 (928)
T PF04762_consen  353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV  432 (928)
T ss_pred             ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence            699999887888888877777655441     10        11111110                    0025678999


Q ss_pred             EEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         332 TTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       332 ~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +|++++..+++-..||.+.+|.+.
T Consensus       433 af~~~~~~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  433 AFSPSNSRFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             EEeCCCCeEEEEECCCCEEEEEec
Confidence            999999889999999999999865

>KOG4547|consensus

Probab=99.36  E-value=1.6e-10  Score=104.99  Aligned_cols=189  Identities=15%  Similarity=0.239  Sum_probs=151.7

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc--cCCCeEEEEEc--------------------cCCCEEEEEECCCeE
Q psy8448         160 RDSEMLASGSQSGKVKIWKIATGQCLRKLEKA--HSLGVTCIQFS--------------------RDNSQILTASFDTYV  217 (482)
Q Consensus       160 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~i~~~--------------------~~~~~l~~~~~dg~i  217 (482)
                      |...++|....||.+++|+...++....+...  -.+..++..|.                    -+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45678999999999999999998877766321  12334444442                    133478889999999


Q ss_pred             EEEeCCCCceEEEee--ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCE
Q psy8448         218 RIHGLKSGKMLKEFR--GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       218 ~i~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  295 (482)
                      .+|++..++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+.   ..+..+.+++++|++ ..
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~D~-~~  158 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISPDG-KI  158 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcCCC-CE
Confidence            999999999887776  689999999999999999999999999999999999888887   677789999999998 77


Q ss_pred             EEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCC-----CCEEEE-EeCCcEEEEEeehhh
Q psy8448         296 FVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR-----GEWIYC-VGEDMVLVVRLIQQY  357 (482)
Q Consensus       296 l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~-----g~~l~~-~~~dg~i~iw~~~~~  357 (482)
                      +++++  +.|++||+ +++.+..|.+|   .++|++++|..+     |.++.+ ...+..+.+|..+..
T Consensus       159 l~~as--~~ik~~~~~~kevv~~ftgh---~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  159 LLTAS--RQIKVLDIETKEVVITFTGH---GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             EEecc--ceEEEEEccCceEEEEecCC---CcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            77766  57999999 67777888776   889999999877     666664 445667778876643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.35  E-value=1.1e-09  Score=97.11  Aligned_cols=149  Identities=17%  Similarity=0.227  Sum_probs=119.6

Q ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          95 IKFGSKSHVECARFSPDGQYLITGSVDG-FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      +..+|...|.-..+.-+++-++.|..|| .+-|+|..+++.......         -+.|.++..+|+|++++.+.....
T Consensus       354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~---------lg~I~av~vs~dGK~~vvaNdr~e  424 (668)
T COG4946         354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD---------LGNIEAVKVSPDGKKVVVANDRFE  424 (668)
T ss_pred             EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC---------ccceEEEEEcCCCcEEEEEcCceE
Confidence            3448899999999999999999999999 999999998875443322         267999999999999999998899


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC----eEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT----YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      +.+.|+.++.... +.+...+-|+.++|+|+++++|.+--+|    .|+++|+..++...... ..+.=.+-+|.|++++
T Consensus       425 l~vididngnv~~-idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ry  502 (668)
T COG4946         425 LWVIDIDNGNVRL-IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRY  502 (668)
T ss_pred             EEEEEecCCCeeE-ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcE
Confidence            9999999887544 3355667899999999999999887776    69999999888765443 3333456688999998


Q ss_pred             EEEEe
Q psy8448         250 VLSAS  254 (482)
Q Consensus       250 l~~~~  254 (482)
                      |.--+
T Consensus       503 LYfLs  507 (668)
T COG4946         503 LYFLS  507 (668)
T ss_pred             EEEEe
Confidence            76544

>KOG1354|consensus

Probab=99.35  E-value=9.7e-11  Score=99.32  Aligned_cols=203  Identities=15%  Similarity=0.290  Sum_probs=139.6

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE----eEEeecccC------------CCeEEEEEccCC--CEEEEEE
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC----LRKLEKAHS------------LGVTCIQFSRDN--SQILTAS  212 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~------------~~v~~i~~~~~~--~~l~~~~  212 (482)
                      +-|.++.|...|.+|++|..+|.|.++.-.....    .......|.            ..|..+.|.+++  ..++..+
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            5689999999999999999999999997433221    111112232            357889998854  4677888


Q ss_pred             CCCeEEEEeCCCCceE-----------------------------------EEe-eccccceeEEEEcCCCCEEEEEeCC
Q psy8448         213 FDTYVRIHGLKSGKML-----------------------------------KEF-RGHSSFVNDITFTADGHSVLSASSD  256 (482)
Q Consensus       213 ~dg~i~i~d~~~~~~~-----------------------------------~~~-~~~~~~i~~l~~~~~~~~l~~~~~d  256 (482)
                      .|.+|++|.+......                                   +.+ .+|...|+++.++.|+..++++. |
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-d  184 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-D  184 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-c
Confidence            8999999987532110                                   011 25778899999999999888765 6


Q ss_pred             CcEEEEECCCCceeeeeeccCCC-----ccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcE-----EEEecCCcc---
Q psy8448         257 GTVKMWNLKTTECTSTFKSLGAS-----DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI-----VRSLSSGKR---  323 (482)
Q Consensus       257 g~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~---  323 (482)
                      =.|.+|+++-...-..+....++     ..-|++..|+|..-.+|+-.+..|+|++-|++...     ...+.....   
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~  264 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS  264 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence            67999998754332222222222     24578899999887889999999999999996221     111111100   


Q ss_pred             ------cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         324 ------EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       324 ------~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                            --..|..+.|+++|+++++-+. -++++||+.
T Consensus       265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence                  1245778999999999986543 678877764

>KOG1064|consensus

Probab=99.34  E-value=5.1e-12  Score=127.91  Aligned_cols=200  Identities=15%  Similarity=0.254  Sum_probs=159.1

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      .|-..|.++.=+|...+.+||+.||.|++|....++.+..+....       +..|+.+.|+.+|+.+..+..||.+.+|
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-------~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-------NSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC-------cchhhhhhhcccCCceeeeccCCceeec
Confidence            456778999999999999999999999999998888776665543       3789999999999999999999999999


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE---CCCeEEEEeCCCCc-eEEEeeccccceeEEEEcCCCCEEEEE
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS---FDTYVRIHGLKSGK-MLKEFRGHSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~  253 (482)
                      ... .+..... +.|........|-.  ..+++++   .++.+.+||.--.. .-..-..|.+.++++++.|..+.|++|
T Consensus      2279 q~~-pk~~~s~-qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2279 QAS-PKPYTSW-QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred             ccC-Ccceecc-ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence            976 4444444 67888888888865  5566654   46789999964221 111227799999999999999999999


Q ss_pred             eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCc
Q psy8448         254 SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGK  322 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~  322 (482)
                      +.+|.|++||++..+.+..++.            +.  ...+|++++..|.++||++. -..+..+...+
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~------------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA------------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh------------hh--hhheeeccCcccceEEEEccccchhhcCchhh
Confidence            9999999999998887777652            22  23789999999999999994 45555555443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.32  E-value=9.4e-10  Score=98.32  Aligned_cols=236  Identities=14%  Similarity=0.188  Sum_probs=159.6

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC------
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG------  172 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg------  172 (482)
                      -.-++..++|||.|.+|++....| |.+|.-..+..+..+..          ..|..+.|+|.++||.+-+..+      
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~----------~~V~~~~fSP~~kYL~tw~~~pi~~pe~   99 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH----------PDVKYLDFSPNEKYLVTWSREPIIEPEI   99 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeeec----------CCceecccCcccceeeeeccCCccChhh
Confidence            466889999999999999887665 99998877664444432          4699999999999999876443      


Q ss_pred             ---------cEEEEEcCCCeEeEEeecccCCC--eE-EEEEccCCCEEEEEECCCeEEEEeCCCCce-EEEeecc-ccce
Q psy8448         173 ---------KVKIWKIATGQCLRKLEKAHSLG--VT-CIQFSRDNSQILTASFDTYVRIHGLKSGKM-LKEFRGH-SSFV  238 (482)
Q Consensus       173 ---------~i~iwd~~~~~~~~~~~~~~~~~--v~-~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~-~~~i  238 (482)
                               .+.+||+.++..+..+. ....+  .. -+.|+.+..+++-. ....++|+++ +... ...+... ...|
T Consensus       100 e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi  176 (561)
T COG5354         100 EISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI  176 (561)
T ss_pred             ccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence                     49999999999988884 33333  33 67888888877655 3557999997 3321 1111111 3568


Q ss_pred             eEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe----------C
Q psy8448         239 NDITFTADG--HSVLS-----ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN----------K  301 (482)
Q Consensus       239 ~~l~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~----------~  301 (482)
                      ....|+|.+  ..|+.     .+..+.+++|.+..+..+.+-.   -.+..-..+.|.+.|..+++..-          .
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~---lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN---LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee---eEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            888999864  33443     4567889999998766554433   12223346788888844443221          1


Q ss_pred             CCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe--CCcEEEEEee
Q psy8448         302 TNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG--EDMVLVVRLI  354 (482)
Q Consensus       302 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~--~dg~i~iw~~  354 (482)
                      ...+++++++++.+......   .++|...+|.|.++.+++.+  .+-.+.++++
T Consensus       254 esnLyl~~~~e~~i~V~~~~---~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         254 ESNLYLLRITERSIPVEKDL---KDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             cceEEEEeecccccceeccc---cccceeeeecccCCceeEEecccccceeeccc
Confidence            35688888875544444322   67899999999988776544  5666664444

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.29  E-value=4.8e-08  Score=85.57  Aligned_cols=221  Identities=16%  Similarity=0.203  Sum_probs=150.2

Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEc-CCCCEEEEEeCCCcEEEEEcCCC
Q psy8448         105 CARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS-RDSEMLASGSQSGKVKIWKIATG  182 (482)
Q Consensus       105 ~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~~~l~~~~~dg~i~iwd~~~~  182 (482)
                      ++.|.+ ++.++++-...+.|+.|+..+++... +..          .....+++. +++ .|+.+... .+.++|+.++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~----------~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL----------PGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTG   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES----------SSEEEEEEECTTS-EEEEEETT-CEEEEETTTT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec----------CCCceEEEEccCC-EEEEEEcC-ceEEEecCCC
Confidence            578998 77777777788999999998876432 111          226777887 564 55555554 4566699888


Q ss_pred             eEeEEeecc----cCCCeEEEEEccCCCEEEEEECC--------CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448         183 QCLRKLEKA----HSLGVTCIQFSRDNSQILTASFD--------TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       183 ~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  250 (482)
                      +........    .....+.+++.|+|...++....        |.|..++.. ++...... .-...+.|+|+|+++.|
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEE
T ss_pred             cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchhe
Confidence            655444321    34568899999999977766543        568888876 55433333 35567899999999977


Q ss_pred             E-EEeCCCcEEEEECCCCce----eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccC
Q psy8448         251 L-SASSDGTVKMWNLKTTEC----TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREG  325 (482)
Q Consensus       251 ~-~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  325 (482)
                      + +-+..+.|..|++.....    ...+..........-.+++..+| +++++....+.|.+++.+|+.+..+...   .
T Consensus       149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~p---~  224 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPDGKLLREIELP---V  224 (246)
T ss_dssp             EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEEE-S---S
T ss_pred             eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCCccEEEEEcCC---C
Confidence            6 456678899999864322    22222222222347789999998 7888888899999999999988888765   3


Q ss_pred             cCEEEEEE-cCCCCEEEEEe
Q psy8448         326 GDFLCCTT-SPRGEWIYCVG  344 (482)
Q Consensus       326 ~~v~~~~~-~~~g~~l~~~~  344 (482)
                      ..+++++| .++.+.|+..+
T Consensus       225 ~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  225 PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSEEEEEEESTTSSEEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEe
Confidence            47899999 46767666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.27  E-value=5.6e-09  Score=97.88  Aligned_cols=218  Identities=14%  Similarity=0.153  Sum_probs=139.8

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      .+..+++++.+|.|..+|..+|+..-.......        .......  ++..+++++.+|.+..+|..+|+.+.....
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--------~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  133 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDER--------LSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL  133 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCC--------cccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence            366888888899999999999998765554421        0111122  466788888999999999999998877632


Q ss_pred             ccCCCeEE-EEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccce-----eEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy8448         191 AHSLGVTC-IQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFV-----NDITFTADGHSVLSASSDGTVKMWNL  264 (482)
Q Consensus       191 ~~~~~v~~-i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-----~~l~~~~~~~~l~~~~~dg~i~i~d~  264 (482)
                        ...+.+ ...  .+..++.++.++.|..+|.++++.+.++......+     .+...  .+..++.+..++.+..+|.
T Consensus       134 --~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~  207 (377)
T TIGR03300       134 --SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDL  207 (377)
T ss_pred             --CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEc
Confidence              222221 111  34577788889999999999999887765332211     11111  1246778888899999999


Q ss_pred             CCCceeeeeeccCCCc-cc------e-eEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcC
Q psy8448         265 KTTECTSTFKSLGASD-IA------V-NSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       265 ~~~~~~~~~~~~~~~~-~~------v-~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~  335 (482)
                      ++++.+.......... ..      + ....+  .+ ..+++++.++.++.+|. +|+.+......     ......  .
T Consensus       208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-----~~~~p~--~  277 (377)
T TIGR03300       208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGRVLWKRDAS-----SYQGPA--V  277 (377)
T ss_pred             cCCCEeeeeccccCCCCCchhhhhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCcEEEeeccC-----CccCce--E
Confidence            9998665432110000 00      0 11111  12 57778888999999999 67766555421     111222  2


Q ss_pred             CCCEEEEEeCCcEEEEEee
Q psy8448         336 RGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       336 ~g~~l~~~~~dg~i~iw~~  354 (482)
                      ++..+++++.+|.++.++.
T Consensus       278 ~~~~vyv~~~~G~l~~~d~  296 (377)
T TIGR03300       278 DDNRLYVTDADGVVVALDR  296 (377)
T ss_pred             eCCEEEEECCCCeEEEEEC
Confidence            4678888899999994443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.27  E-value=2.1e-08  Score=104.37  Aligned_cols=249  Identities=10%  Similarity=0.087  Sum_probs=160.4

Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeecccccccccc------ccccccEEEEEEcCCCCEEEEEe-CCCcEE
Q psy8448         104 ECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNF------MLMEEAVMSLAYSRDSEMLASGS-QSGKVK  175 (482)
Q Consensus       104 ~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~  175 (482)
                      ..++++++ +.++++-+.++.|+++|.. +.....+........      ..+-.....+++.++++.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 6677777788999999975 443332221100000      01113468899999888766665 457899


Q ss_pred             EEEcCCCeEeEEeecc-c---------------CCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeec-----
Q psy8448         176 IWKIATGQCLRKLEKA-H---------------SLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRG-----  233 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~-~---------------~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----  233 (482)
                      ++|+.++.. ..+... .               -..-..++++| ++..+++...++.|++||..++... .+.+     
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            999877643 222110 0               11235789999 5555666677889999998776542 2211     


Q ss_pred             ----------cccceeEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeeeee----------ccCC--------Ccccee
Q psy8448         234 ----------HSSFVNDITFTADGHSVL-SASSDGTVKMWNLKTTECTSTFK----------SLGA--------SDIAVN  284 (482)
Q Consensus       234 ----------~~~~i~~l~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~----------~~~~--------~~~~v~  284 (482)
                                .-.....|+++|+++.|+ +-+.++.|++||+.++.......          ....        .-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      112356799999998554 55567899999998765321110          0000        011235


Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc-----------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         285 SIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK-----------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       285 ~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      .++++++| .++++-+.++.|++||..+..+..+....           ........++++++|+.+++-+.++.|++|+
T Consensus       808 Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            88999998 78888889999999999655555443211           0122467899999999988989999999888


Q ss_pred             ehh
Q psy8448         354 IQQ  356 (482)
Q Consensus       354 ~~~  356 (482)
                      +..
T Consensus       887 ~~~  889 (1057)
T PLN02919        887 LNK  889 (1057)
T ss_pred             CCC
Confidence            754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=7e-09  Score=97.10  Aligned_cols=200  Identities=11%  Similarity=0.035  Sum_probs=129.8

Q ss_pred             cEEEEEEcCCCCE-EEEEeC---CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-C--CCcE
Q psy8448         102 HVECARFSPDGQY-LITGSV---DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-Q--SGKV  174 (482)
Q Consensus       102 ~v~~~~~s~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~--dg~i  174 (482)
                      .+....|+|||+. ++..+.   +..|.++|+.+++.......         .+......|+|||+.++... .  +..|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---------~g~~~~~~~SPDG~~la~~~~~~g~~~I  259 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---------QGMLVVSDVSKDGSKLLLTMAPKGQPDI  259 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC---------CCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence            7789999999985 654433   35799999988875543322         24456678999998776543 2  3568


Q ss_pred             EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-C--eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-T--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      .++|+.+++.. .+ ..+........|+|||+.|+..+.. +  .|++.|+.+++..+.... ...  ...|+|+|+.|+
T Consensus       260 y~~dl~~g~~~-~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia  334 (419)
T PRK04043        260 YLYDTNTKTLT-QI-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIV  334 (419)
T ss_pred             EEEECCCCcEE-Ec-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEE
Confidence            88888777643 33 2233333456899999988776633 2  688889988776443321 111  248999999988


Q ss_pred             EEeCC---------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcEEEEecC
Q psy8448         252 SASSD---------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN--TVVIMNMQGQIVRSLSS  320 (482)
Q Consensus       252 ~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~  320 (482)
                      .....         ..|.+.|+.++... .+.   .. .......|+|+|..++++....+  .+.+.+++|.....+..
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT---~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~  409 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIR-RLT---AN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL  409 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeE-ECC---CC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence            76653         36888898887643 332   11 12335889999954444443333  36677777766665543

>KOG0309|consensus

Probab=99.25  E-value=8.8e-11  Score=109.24  Aligned_cols=294  Identities=18%  Similarity=0.262  Sum_probs=193.6

Q ss_pred             HHHHhhcccceeeChhHHHHHHHhHhhhhhccCCCCCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEc
Q psy8448          30 AIAHALVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFS  109 (482)
Q Consensus        30 ~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  109 (482)
                      .-+....+.+++.|.+|-.++..+.            |.         .+.+...+..|....+++.   .-.|-.+.|+
T Consensus        21 l~v~~~~~a~si~p~grdi~lAsr~------------gl---------~i~dld~p~~ppr~l~h~t---pw~vad~qws   76 (1081)
T KOG0309|consen   21 LKVDGGFNAVSINPSGRDIVLASRQ------------GL---------YIIDLDDPFTPPRWLHHIT---PWQVADVQWS   76 (1081)
T ss_pred             EEecCcccceeeccccchhhhhhhc------------Ce---------EEEeccCCCCCceeeeccC---cchhcceecc
Confidence            3345566788899999888777651            11         1122222333334433322   2346677888


Q ss_pred             CC--CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeE-e
Q psy8448         110 PD--GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQSGKVKIWKIATGQC-L  185 (482)
Q Consensus       110 ~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~-~  185 (482)
                      |.  ..+-++......-.+|++....-..     -.-.+.+|...|+.+-|+|+ ...+++++.|-.+..||+++... +
T Consensus        77 ~h~a~~~wiVsts~qkaiiwnlA~ss~~a-----Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~  151 (1081)
T KOG0309|consen   77 PHPAKPYWIVSTSNQKAIIWNLAKSSSNA-----IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF  151 (1081)
T ss_pred             cCCCCceeEEecCcchhhhhhhhcCCccc-----eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce
Confidence            73  3455555556667889886433111     11123457899999999995 45889999999999999988654 3


Q ss_pred             EEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEE
Q psy8448         186 RKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWN  263 (482)
Q Consensus       186 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d  263 (482)
                      ..+ ..-......++|+.....+.+.+..+.|++||.+.+ .++..+++|...|..++|+. ....+.+.+.||+|+.||
T Consensus       152 ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~  230 (1081)
T KOG0309|consen  152 YST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD  230 (1081)
T ss_pred             eee-ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence            333 344556788999987777777777889999999876 46778888999999999976 334588899999999999


Q ss_pred             CCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCe-EEEEEcC-----------CcEEEEecCCcccCcCEEEE
Q psy8448         264 LKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT-VVIMNMQ-----------GQIVRSLSSGKREGGDFLCC  331 (482)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-i~i~d~~-----------~~~~~~~~~~~~~~~~v~~~  331 (482)
                      ............  ..+.+|..-.+.|-|..+++.-...+. +.+++.+           .+++..+.+|   ...|..+
T Consensus       231 y~kSt~e~~~~v--tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH---~D~V~eF  305 (1081)
T KOG0309|consen  231 YSKSTTESKRTV--TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH---DDVVLEF  305 (1081)
T ss_pred             ccccccccceec--cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc---chHHHHH
Confidence            876433222211  556788888888887555554433333 3333221           3456666655   5555554


Q ss_pred             EEcCC----------CCEEEEEeCCcEEEEEeehhhh
Q psy8448         332 TTSPR----------GEWIYCVGEDMVLVVRLIQQYL  358 (482)
Q Consensus       332 ~~~~~----------g~~l~~~~~dg~i~iw~~~~~~  358 (482)
                      .|-..          .-.|++=+.|..+++|-+....
T Consensus       306 lWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i  342 (1081)
T KOG0309|consen  306 LWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI  342 (1081)
T ss_pred             hhhhcccccCCCCccceeEEEeecCCceEeeeccHHH
Confidence            44322          2368999999999999876443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.25  E-value=3e-08  Score=85.65  Aligned_cols=228  Identities=15%  Similarity=0.224  Sum_probs=161.1

Q ss_pred             EEEEcC-CCCEEEEEeCCC-eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-----CCcEEEE
Q psy8448         105 CARFSP-DGQYLITGSVDG-FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-----SGKVKIW  177 (482)
Q Consensus       105 ~~~~s~-~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-----dg~i~iw  177 (482)
                      .++.+| .+..++.+-.-| ...+||..+++....+.......+.+|      -.|++||++|++.-.     .|.|-||
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            577888 556666676555 578999999999988887777667666      469999999998743     4899999


Q ss_pred             EcC-CCeEeEEeecccCCCeEEEEEccCCCEEEEEE------------------CCCeEEEEeCCCCceEEE--e--ecc
Q psy8448         178 KIA-TGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS------------------FDTYVRIHGLKSGKMLKE--F--RGH  234 (482)
Q Consensus       178 d~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~--~--~~~  234 (482)
                      |.. +-+.+..+ ..+.-.-..+.+.|||+.|+++.                  .+..+.+.|..+++.+..  +  ..|
T Consensus        83 d~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~  161 (305)
T PF07433_consen   83 DAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH  161 (305)
T ss_pred             ECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence            998 55667777 56666677889999998888763                  234677778888887766  4  237


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceeeeeec----cCCCccceeEEEEcCCCCCEEEEEeCCC
Q psy8448         235 SSFVNDITFTADGHSVLSASSDGT-------VKMWNLKTTECTSTFKS----LGASDIAVNSIHLLPKNTEHFVVCNKTN  303 (482)
Q Consensus       235 ~~~i~~l~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~l~~~~~d~  303 (482)
                      .-.|..+++.++|..++..-..|.       |-+++..  +....+..    .......+-+|++++++..+.+++-..+
T Consensus       162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg  239 (305)
T PF07433_consen  162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG  239 (305)
T ss_pred             ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence            778999999999886665544332       3444433  22222221    1134567899999999855556667888


Q ss_pred             eEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         304 TVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       304 ~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      .+.+||. ++..+....     -..+..++-.+++ ++++.+...
T Consensus       240 ~~~~~d~~tg~~~~~~~-----l~D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  240 RVAVWDAATGRLLGSVP-----LPDACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             EEEEEECCCCCEeeccc-----cCceeeeeecCCc-eEEeCCCcc
Confidence            9999998 576666555     3456677777777 666655544

>KOG1064|consensus

Probab=99.25  E-value=4.4e-11  Score=121.41  Aligned_cols=187  Identities=14%  Similarity=0.231  Sum_probs=152.1

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      -..|.++.=+|...+.++|+.||.+++|....++.+..+.......|+.+.|+.+|..+..+..||.+.+|.+. .++..
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence            45688888899889999999999999999999988888876667889999999999999999999999999985 77778


Q ss_pred             EeeccccceeEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         230 EFRGHSSFVNDITFTADGHSVLSAS---SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       230 ~~~~~~~~i~~l~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                      ..+.|......+.|-.  ..+++++   .++.+.+||..-.....-+.  ..|...++++++.|.. .++++|+.+|.|+
T Consensus      2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~-qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKH-QLLISGGRKGEVC 2361 (2439)
T ss_pred             ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcc-eEEEecCCcCcEE
Confidence            8888999888888875  5566654   46889999965432212121  3899999999999998 8999999999999


Q ss_pred             EEEcCCcE-EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         307 IMNMQGQI-VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       307 i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +||++.+. ...+..            ++ ...++++|+..|.++||++.
T Consensus      2362 l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             EeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEcc
Confidence            99995433 333321            44 56789999999999977665

>KOG4714|consensus

Probab=99.21  E-value=3.8e-10  Score=92.12  Aligned_cols=247  Identities=15%  Similarity=0.200  Sum_probs=139.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccc----cccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK----YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      |+.+.++.+ ..|+++..++.+.....-.+.+.....    ......+.-|+++-.+-+.+-.++.+++++.||.+.+++
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            555556543 355666666666555443333222111    111111111222222222333456799999999999999


Q ss_pred             cCCCeE-eEEeecccCCCeEEEEEccCCCEEEEEE-----CCCeEEEEeCCCCceEEEeeccccceeEEEEcCC-CCEEE
Q psy8448         179 IATGQC-LRKLEKAHSLGVTCIQFSRDNSQILTAS-----FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD-GHSVL  251 (482)
Q Consensus       179 ~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~  251 (482)
                      .+.-.. ..++...|.+ -.+.++...+..+.++.     .-+..+.|+++..+.+..-......|.+++-+|. .+.++
T Consensus       118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~  196 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC  196 (319)
T ss_pred             chHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence            765211 1111111111 11222333444444332     1234566666554433222222334899999985 45667


Q ss_pred             EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCccc-----Cc
Q psy8448         252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE-----GG  326 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~  326 (482)
                      +|+.||.+.+||.++......  .+..|+.+++.+.|+|..+..|++++.||.+-.||..+..+..-.....+     ..
T Consensus       197 cgt~dg~~~l~d~rn~~~p~S--~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD  274 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPVS--LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGD  274 (319)
T ss_pred             EecCCCeEEEEEcccccchHH--HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCC
Confidence            888999999999998743322  23389999999999999999999999999999999876554422111000     01


Q ss_pred             CEEE---------------EEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         327 DFLC---------------CTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       327 ~v~~---------------~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ++.+               -.|.--|..|++|+.-+.|++++
T Consensus       275 ~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  275 PVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            1111               12333578899999999998653

>KOG3914|consensus

Probab=99.19  E-value=2.7e-10  Score=98.84  Aligned_cols=163  Identities=19%  Similarity=0.316  Sum_probs=115.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecCCCce-eeccccccccccccccccEEEEEEcCCCCEEEEEeCC---CcEEEEE
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKI-RKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---GKVKIWK  178 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---g~i~iwd  178 (482)
                      +..+..++++++||.+..+....++++..... ........      -....+++.+..+......+..-   ..+.+|.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC------VPKRPTAISFIREDTSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee------cccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence            44556788899999998888877777665432 11111110      02344555565555555555444   4455555


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe-eccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF-RGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      ...+.....  .+|-..++.++|+||+++|+++..|..|++-.....-.+..+ -||+..|..++.-++ ..|++++.|+
T Consensus       139 ~~~~~~~~~--lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~  215 (390)
T KOG3914|consen  139 ADSGRCEPI--LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDK  215 (390)
T ss_pred             ccccCcchh--hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCC
Confidence            544443333  589999999999999999999999999999887666555555 479999999999865 5599999999


Q ss_pred             cEEEEECCCCceeeeee
Q psy8448         258 TVKMWNLKTTECTSTFK  274 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~  274 (482)
                      +|++||+++++++.++.
T Consensus       216 tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  216 TLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cEEEEecccCCcccccc
Confidence            99999999999876654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.19  E-value=1.6e-09  Score=90.78  Aligned_cols=249  Identities=16%  Similarity=0.272  Sum_probs=165.1

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccc------------cccEEEEEEcCCC--CE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM------------EEAVMSLAYSRDS--EM  164 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h------------~~~i~~l~~~~~~--~~  164 (482)
                      ....|+++.|...|.||++|...|.|.+|.-+....-   .......+.+|            ...|..+.|..++  ..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c---eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGC---EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeeccccccc---chhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            3567999999999999999999999999986543310   01111112222            4578889988744  46


Q ss_pred             EEEEeCCCcEEEEEcCCCeE------------------------------------------eEEeecccCCCeEEEEEc
Q psy8448         165 LASGSQSGKVKIWKIATGQC------------------------------------------LRKLEKAHSLGVTCIQFS  202 (482)
Q Consensus       165 l~~~~~dg~i~iwd~~~~~~------------------------------------------~~~~~~~~~~~v~~i~~~  202 (482)
                      ++..+.|.+|++|.+.....                                          .+.+...|..-+.++.|+
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            77778999999998753200                                          011113566678899999


Q ss_pred             cCCCEEEEEECCCeEEEEeCCCCce---EEEeeccc-----cceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCce----
Q psy8448         203 RDNSQILTASFDTYVRIHGLKSGKM---LKEFRGHS-----SFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTEC----  269 (482)
Q Consensus       203 ~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~-----~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~----  269 (482)
                      .|...++++. |=.|.+|+++-...   +..+++|.     .-|++..|+|. ...+.-.+..|.|++-|++....    
T Consensus       182 sD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         182 SDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             Cchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            8888777765 77899998864332   22333333     35888999995 45666778889999999984221    


Q ss_pred             eeeee----c-----cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcc---------cCcCE-
Q psy8448         270 TSTFK----S-----LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKR---------EGGDF-  328 (482)
Q Consensus       270 ~~~~~----~-----~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~---------~~~~v-  328 (482)
                      ...+.    .     ...-...|..+.|++.| ++++ +-.--++++||.+  .+++.++..+..         ....| 
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIl-sRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaif  338 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYIL-SRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIF  338 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEE-EeccceEEEEecccccCCceeechHHHHHHHHHhhhhcccee
Confidence            01110    0     01223567889999997 4544 4455689999993  667777654321         12222 


Q ss_pred             --EEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         329 --LCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       329 --~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                        ..+.|+-|.+.+.+|+..+..-||-
T Consensus       339 dkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         339 DKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             eeEEEEecCCcccccccccccceeeec
Confidence              3578899999999999988888653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=2.8e-08  Score=93.13  Aligned_cols=182  Identities=10%  Similarity=0.080  Sum_probs=120.2

Q ss_pred             cEEEEEEcCCCCE-EEEEeC---CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE-C--CCeEEEEeCCC
Q psy8448         152 AVMSLAYSRDSEM-LASGSQ---SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-F--DTYVRIHGLKS  224 (482)
Q Consensus       152 ~i~~l~~~~~~~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~--dg~i~i~d~~~  224 (482)
                      ......|+|+|+. ++..+.   +..|.++|+.+++.....  ...+......|+|||+.++... .  +..|.++|+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            5778999999985 665443   356899999888765543  2445566788999998776543 2  35788889887


Q ss_pred             CceEEEeeccccceeEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         225 GKMLKEFRGHSSFVNDITFTADGHSVLSASSD-G--TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       225 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      ++. ..+..+........|+|||+.|+..+.. +  .|.++|+.+++..+....  +.  .  ...|+|+|..++++...
T Consensus       267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~--~--~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK--N--NSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC--c--CceECCCCCEEEEEEcC
Confidence            764 3344344334456899999988776642 3  588888888776443321  11  1  24899999544444443


Q ss_pred             C--------CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         302 T--------NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       302 d--------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      .        ..|.+.|+.+.....+....    ......|+|||+.|+..+.+
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~~~----~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYIRRLTANG----VNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCeEECCCCC----CcCCeEECCCCCEEEEEEcc
Confidence            2        36888888655556665431    22358899999988866543

>KOG4532|consensus

Probab=99.16  E-value=1.5e-08  Score=83.38  Aligned_cols=235  Identities=10%  Similarity=0.021  Sum_probs=151.7

Q ss_pred             EEEEEcC-----CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEE-cCCCCEEEEEeCCCcEEEE
Q psy8448         104 ECARFSP-----DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-SRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus       104 ~~~~~s~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~-~~~~~~l~~~~~dg~i~iw  177 (482)
                      +.+.|-|     .-.+||.|+..|...+|...+.+....+--.       |...|+-+.= .-....+..++.|.++++.
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~-------snn~v~~~~r~cd~~~~~~i~sndht~k~~  143 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV-------SNNDVTLVKRYCDLKFPLNIASNDHTGKTM  143 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecc-------cccchhhhhhhcccccceeeccCCcceeEE
Confidence            3455655     3458899999999999999876643322211       1122221111 1122357778889999999


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce-E-E-EeeccccceeEEEEcCCCCEEEEEe
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM-L-K-EFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~-~-~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      ++..+....... ...-.+.+++++++++++++.+....|..|.+..... + . ......+.-.+..|+.....++++.
T Consensus       144 ~~~~~s~~~~~h-~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~  222 (344)
T KOG4532|consen  144 VVSGDSNKFAVH-NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF  222 (344)
T ss_pred             EEecCcccceee-ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe
Confidence            886654443331 1123488999999999999999999999999875432 2 2 2223344456889999999999999


Q ss_pred             CCCcEEEEECCCCceeeeee--ccCCCccceeEEEEcCCCC-CEEEEEeCCCeEEEEEcC-CcEEEEecCC----ccc-C
Q psy8448         255 SDGTVKMWNLKTTECTSTFK--SLGASDIAVNSIHLLPKNT-EHFVVCNKTNTVVIMNMQ-GQIVRSLSSG----KRE-G  325 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~--~~~~~~~~v~~i~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~~----~~~-~  325 (482)
                      .||++.|||++.........  ....|++.+..+.|++.|. .+|+..-.-+.+.+.|++ +...+.+...    ..| .
T Consensus       223 Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~t  302 (344)
T KOG4532|consen  223 QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNT  302 (344)
T ss_pred             cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccc
Confidence            99999999999854332221  1125889999999998664 355555566889999994 4333332211    011 2


Q ss_pred             cCEEEEEEcCCCCEEEEEeCC
Q psy8448         326 GDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       326 ~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      ..+....|+.++..+.+.+++
T Consensus       303 q~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  303 QHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             cccccccccCCCcccccccch
Confidence            336667777777666665554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.14  E-value=3.3e-07  Score=76.84  Aligned_cols=230  Identities=16%  Similarity=0.187  Sum_probs=134.6

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEecCCCc--eeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe
Q psy8448         106 ARFSPDGQYLITGSVDGFIEVWNFTTGK--IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ  183 (482)
Q Consensus       106 ~~~s~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  183 (482)
                      ++.+++|++||.-- |..|.|-..++.-  .+.....+..     -.-.-..++|+||+..||.+...|+|+++|+.. .
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD-----~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~   75 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKD-----PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-S   75 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCC-----CCchheEEEECCCCcEEEEEcCCCeEEEEeccc-c
Confidence            56788999888764 6778777655421  1111111110     023467899999999999999999999999865 3


Q ss_pred             EeEEeeccc------CCCeEEEEEccC------CCEEEEEECCCeEEEEeCCC-----CceEEEee---ccccceeEEEE
Q psy8448         184 CLRKLEKAH------SLGVTCIQFSRD------NSQILTASFDTYVRIHGLKS-----GKMLKEFR---GHSSFVNDITF  243 (482)
Q Consensus       184 ~~~~~~~~~------~~~v~~i~~~~~------~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~---~~~~~i~~l~~  243 (482)
                      .+..+...+      ...|..+.|.+.      ...|++-..+|.++-|-+..     .+...++.   .+...|.++.+
T Consensus        76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence            333432222      245667777542      12466777788888777532     22333333   24668999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeE-------EEEEcCCcEEE
Q psy8448         244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTV-------VIMNMQGQIVR  316 (482)
Q Consensus       244 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i-------~i~d~~~~~~~  316 (482)
                      +|..++|++|+....      +.+.  ..     .....+++-....+.+.+..+.+.+..+       .++.+-...  
T Consensus       156 ~p~h~LLlVgG~~~~------~~~~--s~-----a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~--  220 (282)
T PF15492_consen  156 HPKHRLLLVGGCEQN------QDGM--SK-----ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK--  220 (282)
T ss_pred             cCCCCEEEEeccCCC------CCcc--cc-----ccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee--
Confidence            999898888775432      0000  00     1122233333333332222222221111       233321111  


Q ss_pred             EecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhh
Q psy8448         317 SLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       317 ~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                      .+.........|..|..||||..|++...+|.|.+|+++..
T Consensus       221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  221 FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            11111122667899999999999999999999999988743

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.12  E-value=6.8e-08  Score=100.63  Aligned_cols=197  Identities=11%  Similarity=0.130  Sum_probs=125.8

Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEeEEeec-cc------------CCCeEEEEEccCCCEEEEEE-CCCeEE
Q psy8448         154 MSLAYSRD-SEMLASGSQSGKVKIWKIATGQCLRKLEK-AH------------SLGVTCIQFSRDNSQILTAS-FDTYVR  218 (482)
Q Consensus       154 ~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~------------~~~v~~i~~~~~~~~l~~~~-~dg~i~  218 (482)
                      ..+++++. ++.+++-+.++.|+++|.. +..+..+.. +.            -.....+++++++..|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 5566666678899999975 444433321 11            12357889999887766655 456899


Q ss_pred             EEeCCCCceEEEeecc-----------------ccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeecc----
Q psy8448         219 IHGLKSGKMLKEFRGH-----------------SSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTTECTSTFKSL----  276 (482)
Q Consensus       219 i~d~~~~~~~~~~~~~-----------------~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----  276 (482)
                      ++|..++. +.++.+.                 -.....++++| ++..+++.+.++.|++||..++... .+...    
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            99987764 3333210                 11346899999 5566667777899999999876542 22100    


Q ss_pred             --CC------CccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc-------------------ccCcCEE
Q psy8448         277 --GA------SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK-------------------REGGDFL  329 (482)
Q Consensus       277 --~~------~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------~~~~~v~  329 (482)
                        .+      .-.....++++|++..++++.+.++.|++||+.......+....                   .......
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence              00      11234679999998557777788899999998432211111000                   0011245


Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         330 CCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      .++++++|+.+++-+.++.|++|+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD  831 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLD  831 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEE
Confidence            889999999888888999999443

>KOG1912|consensus

Probab=99.10  E-value=1.9e-08  Score=94.74  Aligned_cols=242  Identities=14%  Similarity=0.224  Sum_probs=166.2

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCC------------CEEEEE
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS------------EMLASG  168 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~------------~~l~~~  168 (482)
                      ..-.++.|+|.| ++|.|+. ..|.+-|..+-+.++.+..+        +..|+.+.|.|..            -.||++
T Consensus        16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h--------~s~V~~VrWap~~~p~~llS~~~~~lliAsa   85 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELH--------QSAVTSVRWAPAPSPRDLLSPSSSQLLIASA   85 (1062)
T ss_pred             ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccC--------ccceeEEEeccCCCchhccCccccceeEEec
Confidence            336778999988 6777774 56899998888877776654        6889999998732            256777


Q ss_pred             eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc---CC-CEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEc
Q psy8448         169 SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR---DN-SQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFT  244 (482)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~  244 (482)
                      ...|.|.+||...+..+..+ ..+..++..++|-+   +. ..|++-....+|.+|+..+|+.............|+.++
T Consensus        86 D~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~D  164 (1062)
T KOG1912|consen   86 DISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVD  164 (1062)
T ss_pred             cccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeC
Confidence            78899999999998888888 67888999999976   23 456666667899999999999998888767777889999


Q ss_pred             C-CCCEEEEEeCCCcEEEEECCCCc----eeeeeeccCCCcc-------------------------ceeEEEEcCCCCC
Q psy8448         245 A-DGHSVLSASSDGTVKMWNLKTTE----CTSTFKSLGASDI-------------------------AVNSIHLLPKNTE  294 (482)
Q Consensus       245 ~-~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~-------------------------~v~~i~~~~~~~~  294 (482)
                      | |.+.+..-+..|.+.+-+.-...    +.+.++....|..                         ....++|+|.-.+
T Consensus       165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn  244 (1062)
T KOG1912|consen  165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN  244 (1062)
T ss_pred             CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence            9 66677777777777766643211    1111110001100                         0123566777644


Q ss_pred             EEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         295 HFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       295 ~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      . +.......+.++|++ ...+....-... ..++..+--.|....|++.-.||.+.||.-+
T Consensus       245 ~-lfi~~prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  245 I-LFITFPRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             e-EEEEeccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence            4 344456678999995 445554443311 2334344334445689999999999999655

>KOG4532|consensus

Probab=99.07  E-value=7.2e-08  Score=79.49  Aligned_cols=188  Identities=13%  Similarity=0.083  Sum_probs=122.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeecccccee
Q psy8448         161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVN  239 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  239 (482)
                      ...+|+.|+..|...+|...+.+....+-..+...|+-+.=.. ....+..++.|.++++.++.-+..........-.+.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            4458999999999999999877655444233444333221111 123466778888888888765443322221222378


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEE
Q psy8448         240 DITFTADGHSVLSASSDGTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVR  316 (482)
Q Consensus       240 ~l~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~  316 (482)
                      ++.++++++++++.+....|..|.+.... .+..+. .......-.+..|+... ..++++..||++.|||++  +.+..
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-EAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE-ecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccccchh
Confidence            99999999999999999999999987532 222211 11223334567788777 899999999999999995  33322


Q ss_pred             Eec-CCcccCcCEEEEEEcCCCC--EEEEEeCCcEEE
Q psy8448         317 SLS-SGKREGGDFLCCTTSPRGE--WIYCVGEDMVLV  350 (482)
Q Consensus       317 ~~~-~~~~~~~~v~~~~~~~~g~--~l~~~~~dg~i~  350 (482)
                      ... ....|.+.++.+.|++.|.  +|+..-.-+.+.
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h  277 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH  277 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence            222 1222689999999998664  455444456666

>KOG4190|consensus

Probab=99.06  E-value=5.4e-10  Score=100.83  Aligned_cols=200  Identities=21%  Similarity=0.313  Sum_probs=146.7

Q ss_pred             cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCe
Q psy8448         144 DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT-------GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTY  216 (482)
Q Consensus       144 ~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~  216 (482)
                      ..+.+|++.|..++--.+.+-+++++.|.+|++|.++.       ..+..++ ..|..+|.++.|-.+.++++++  ||.
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeeccceeeec--cCc
Confidence            46778999999888777888899999999999999863       2355566 6899999999999888777765  889


Q ss_pred             EEEEeCCCCceEEEee--ccccceeEEEEcC--CCCEEEEE-eCCCcEEEEECCCCceeeeeecc--CCCccceeEEEEc
Q psy8448         217 VRIHGLKSGKMLKEFR--GHSSFVNDITFTA--DGHSVLSA-SSDGTVKMWNLKTTECTSTFKSL--GASDIAVNSIHLL  289 (482)
Q Consensus       217 i~i~d~~~~~~~~~~~--~~~~~i~~l~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~  289 (482)
                      |.+||.--++.+..+.  ...+.+..+..-+  +...++.+ +...+|+++|.+..+-...++.-  .+.+..+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999987777655332  1222233333333  34444444 67889999999998877776643  3455778999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448         290 PKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV  351 (482)
Q Consensus       290 ~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~i  351 (482)
                      +.| +.++++-..|.|.+.|. +|+.+......   ......++- |..+.|+....|..+.+
T Consensus       886 ~~G-N~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllqlaa-psdq~L~~saldHslaV  943 (1034)
T KOG4190|consen  886 DKG-NKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQLAA-PSDQALAQSALDHSLAV  943 (1034)
T ss_pred             cCc-chhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhhcC-chhHHHHhhcccceeEe
Confidence            999 88999999999999999 57666655543   334444443 55677787777888774

>KOG2314|consensus

Probab=99.05  E-value=1e-07  Score=86.43  Aligned_cols=243  Identities=13%  Similarity=0.169  Sum_probs=159.1

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEEc
Q psy8448         105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIWKI  179 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~  179 (482)
                      -..||.|++++|--.. ..|.||+..+-.++..-...        -..|....|+|.++.||.-...     ..+.+..+
T Consensus       310 ~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk--------i~gIr~FswsP~~~llAYwtpe~~~~parvtL~ev  380 (698)
T KOG2314|consen  310 IFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK--------ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEV  380 (698)
T ss_pred             eEEeccCCceeEEecc-ceEEEEecCceeeecccccC--------CccccCcccCCCcceEEEEcccccCCcceEEEEec
Confidence            4679999999997765 45999997765443322222        3579999999999988875422     35677777


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEE----------CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS----------FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      .+++.++.- .-+.-.=..+.|-.+|.+|+.--          .-..+.|+.++........-.....|...+|-|.|+.
T Consensus       381 Ps~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk  459 (698)
T KOG2314|consen  381 PSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK  459 (698)
T ss_pred             Cccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence            777777665 33443334567777888887532          1124666666665543333345678999999999998


Q ss_pred             EEEEeC---CCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEE---eCCCeEEEEEcCCcEEEEecCCc
Q psy8448         250 VLSASS---DGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC---NKTNTVVIMNMQGQIVRSLSSGK  322 (482)
Q Consensus       250 l~~~~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~  322 (482)
                      +++-+.   ..++.+|-+++ ......+..  ......+.+.|+|.| .+++++   +..|.+.++|++...+.......
T Consensus       460 F~vi~g~~~k~tvsfY~~e~~~~~~~lVk~--~dk~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e  536 (698)
T KOG2314|consen  460 FAVISGNTVKNTVSFYAVETNIKKPSLVKE--LDKKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLKDTASPE  536 (698)
T ss_pred             EEEEEccccccceeEEEeecCCCchhhhhh--hcccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhhhccCcc
Confidence            877554   35688998873 222222221  223567889999999 566554   45789999999642222222111


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeC------CcEEEEEeehhhhhhhc
Q psy8448         323 REGGDFLCCTTSPRGEWIYCVGE------DMVLVVRLIQQYLKESN  362 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g~~l~~~~~------dg~i~iw~~~~~~~~~~  362 (482)
                        ....+.+.|.|.|+++++++.      |.--+||+++.......
T Consensus       537 --h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~~~  580 (698)
T KOG2314|consen  537 --HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKED  580 (698)
T ss_pred             --ccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHHHH
Confidence              234577999999999999875      45567777775444433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.05  E-value=1.1e-06  Score=77.01  Aligned_cols=185  Identities=14%  Similarity=0.086  Sum_probs=120.9

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEc-cCCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448         155 SLAYSR-DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS-RDNSQILTASFDTYVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       155 ~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  232 (482)
                      ++.|.+ ++.++++--..+.|..|+..+++.....   ... ...+++. ++ ..++++...+ +.++|..+++......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---~~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---LPG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---SSS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---cCC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence            567888 6666666567899999999887654322   112 6777887 55 5566666544 5556998886543333


Q ss_pred             c-----cccceeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448         233 G-----HSSFVNDITFTADGHSVLSASSD--------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       233 ~-----~~~~i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                      .     .....+.+++.|+|++.++....        |.|..++.. ++......    .-...+.++|+|++..++++-
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----~~~~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----GLGFPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE----EESSEEEEEEETTSSEEEEEE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec----CcccccceEECCcchheeecc
Confidence            2     34568899999999977766543        557777777 55433332    234568999999995566677


Q ss_pred             eCCCeEEEEEcC--Cc-E--EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         300 NKTNTVVIMNMQ--GQ-I--VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       300 ~~d~~i~i~d~~--~~-~--~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +..+.|..+++.  +. .  ...+.......+..-.++++.+|++.++....+.|.
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~  208 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV  208 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred             cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence            888999999983  33 1  122211111123467899999999888888889998

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.04  E-value=1.9e-07  Score=87.58  Aligned_cols=214  Identities=16%  Similarity=0.178  Sum_probs=136.2

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEE-EEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMS-LAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE  189 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~-l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  189 (482)
                      ++..++.++.+|.+..+|..+|+..-......         .+.+ ...  .+..++.++.+|.+..||.++++.+..+.
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  172 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS  172 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence            46678888889999999999999876544321         1211 111  34567778889999999999999887763


Q ss_pred             cccCCCe-----EEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecccc----c---eeEEEEcC--CCCEEEEEeC
Q psy8448         190 KAHSLGV-----TCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSS----F---VNDITFTA--DGHSVLSASS  255 (482)
Q Consensus       190 ~~~~~~v-----~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~---i~~l~~~~--~~~~l~~~~~  255 (482)
                      . ....+     .+...  .+..++.+..++.+..+|+++++.+........    .   ...+.-+|  .+..+++++.
T Consensus       173 ~-~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~  249 (377)
T TIGR03300       173 R-VTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY  249 (377)
T ss_pred             c-CCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc
Confidence            2 11111     11112  234678888899999999999987665431100    0   00011111  3557888888


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEc
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      +|.+..||.++++.+.....    . .......  .+ ..+++++.+|.+..+|. +|+.+.......  .....+... 
T Consensus       250 ~g~l~a~d~~tG~~~W~~~~----~-~~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~ssp~i-  318 (377)
T TIGR03300       250 QGRVAALDLRSGRVLWKRDA----S-SYQGPAV--DD-NRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLTAPAV-  318 (377)
T ss_pred             CCEEEEEECCCCcEEEeecc----C-CccCceE--eC-CEEEEECCCCeEEEEECCCCcEEEcccccc--CCccccCEE-
Confidence            99999999999987665531    1 1112222  23 57778889999999999 677665443211  111222222 


Q ss_pred             CCCCEEEEEeCCcEEE
Q psy8448         335 PRGEWIYCVGEDMVLV  350 (482)
Q Consensus       335 ~~g~~l~~~~~dg~i~  350 (482)
                       .+..|++++.+|.++
T Consensus       319 -~g~~l~~~~~~G~l~  333 (377)
T TIGR03300       319 -VGGYLVVGDFEGYLH  333 (377)
T ss_pred             -ECCEEEEEeCCCEEE
Confidence             367899999999999

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.04  E-value=1.7e-07  Score=78.55  Aligned_cols=208  Identities=12%  Similarity=0.198  Sum_probs=130.4

Q ss_pred             CCCceeeccCCccccccccccccccc-cceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccc
Q psy8448          65 PPGTTIDLFRGKAAMKDQEEEKYPTQ-LSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQ  143 (482)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  143 (482)
                      .+|..+++..+...--....+++..- -..++.....-.=.-++||||+.+||.+...|+|+++|+....+. .+.....
T Consensus         7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~   85 (282)
T PF15492_consen    7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMS   85 (282)
T ss_pred             CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccc
Confidence            34555554444433333333333322 222333344445678999999999999999999999998764433 3322211


Q ss_pred             cccccccccEEEEEEcCCC------CEEEEEeCCCcEEEEEcCCC-----eEeEE--eecccCCCeEEEEEccCCCEEEE
Q psy8448         144 DNFMLMEEAVMSLAYSRDS------EMLASGSQSGKVKIWKIATG-----QCLRK--LEKAHSLGVTCIQFSRDNSQILT  210 (482)
Q Consensus       144 ~~~~~h~~~i~~l~~~~~~------~~l~~~~~dg~i~iwd~~~~-----~~~~~--~~~~~~~~v~~i~~~~~~~~l~~  210 (482)
                       ....-...|..|.|.+..      ..|++-..+|.++-|-+..+     +....  +.......|.++.++|..+.|++
T Consensus        86 -~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV  164 (282)
T PF15492_consen   86 -FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV  164 (282)
T ss_pred             -cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence             111234678888886632      25677778888887775322     22222  22334678999999999888887


Q ss_pred             EECCC-----------eEEEEeCCCCceEE-----------------------E---e---eccccceeEEEEcCCCCEE
Q psy8448         211 ASFDT-----------YVRIHGLKSGKMLK-----------------------E---F---RGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       211 ~~~dg-----------~i~i~d~~~~~~~~-----------------------~---~---~~~~~~i~~l~~~~~~~~l  250 (482)
                      |+...           -+..|.+-++.+..                       .   +   ......|..|..+|||+.|
T Consensus       165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~L  244 (282)
T PF15492_consen  165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLL  244 (282)
T ss_pred             eccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEE
Confidence            75321           35555543221100                       0   0   1135678999999999999


Q ss_pred             EEEeCCCcEEEEECCCCceeeeee
Q psy8448         251 LSASSDGTVKMWNLKTTECTSTFK  274 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~~~~~~~  274 (482)
                      ++...+|.|.+|++.+.+....+.
T Consensus       245 a~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  245 ACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             EEEEcCCeEEEEecCcchhhcccc
Confidence            999999999999999887777665

>KOG1275|consensus

Probab=99.02  E-value=8.4e-09  Score=98.74  Aligned_cols=183  Identities=15%  Similarity=0.204  Sum_probs=141.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeE
Q psy8448         161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND  240 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  240 (482)
                      ++..++.|+....+..+|+++.+..+... -....|.-|..  +++.+++|...|+|.+-|.++.+.++++..|.+.|..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeee-ccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            34567788877889999999888777663 33334665555  6789999999999999999999999999999999976


Q ss_pred             EEEcCCCCEEEEEeC---------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-
Q psy8448         241 ITFTADGHSVLSASS---------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-  310 (482)
Q Consensus       241 l~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-  310 (482)
                      +..  .|+.|++++.         |.-|+|||++..+.+..+.   .+..+ .-+.|.|.-...+++++..|...+-|. 
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~---~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ---FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA  296 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc---cccCc-hhhhhcccccceEEEEecccceeecccc
Confidence            665  6888988875         4558999999987776664   22222 567889988889999999999999994 


Q ss_pred             --CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         311 --QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       311 --~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                        .+.....+..+ .....+..+.++++|+.++.|..+|.|.+|.
T Consensus       297 ~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  297 TLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence              22222222222 1144589999999999999999999999996

>KOG2695|consensus

Probab=99.01  E-value=2e-09  Score=91.60  Aligned_cols=161  Identities=16%  Similarity=0.347  Sum_probs=119.8

Q ss_pred             EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-----eEeEEeecc
Q psy8448         117 TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG-----QCLRKLEKA  191 (482)
Q Consensus       117 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~  191 (482)
                      +.+.+..|-+-|+++|-... +.         ..+.|.++.|...++++..|+.+|.|..+|++.+     .+...+  -
T Consensus       229 s~G~sqqv~L~nvetg~~qs-f~---------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--y  296 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVETGHQQS-FQ---------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--Y  296 (425)
T ss_pred             cccccceeEEEEeecccccc-cc---------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--E
Confidence            33445667788877765322 11         1467999999998999999999999999999865     334444  4


Q ss_pred             cCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCce---EEEeeccccceeE--EEEcCCCCEEEEEeCCCcEEEEECC
Q psy8448         192 HSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKM---LKEFRGHSSFVND--ITFTADGHSVLSASSDGTVKMWNLK  265 (482)
Q Consensus       192 ~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~--l~~~~~~~~l~~~~~dg~i~i~d~~  265 (482)
                      |.+.|+++..-. ++++|++.+.+|.|.+||++.-++   +..+.+|-..-.-  +-..+....+++++.|...+||.++
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            889999998877 788999999999999999998777   8888887553322  2345567788999999999999999


Q ss_pred             CCceeeeeeccC-CCccceeEEEEc
Q psy8448         266 TTECTSTFKSLG-ASDIAVNSIHLL  289 (482)
Q Consensus       266 ~~~~~~~~~~~~-~~~~~v~~i~~~  289 (482)
                      .+..+.+++... ..+..+.++++.
T Consensus       377 ~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  377 SGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cCceeeccCCCCccccccccceehh
Confidence            999888775322 122244455554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.01  E-value=5.9e-07  Score=78.47  Aligned_cols=211  Identities=17%  Similarity=0.181  Sum_probs=132.6

Q ss_pred             CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEE
Q psy8448         121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ  200 (482)
Q Consensus       121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~  200 (482)
                      +|+|..||..+|+.+-.......      .....+. ..+++..+++++.++.+..||..+|+.+..+..  ...+....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~------~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~   72 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPG------IGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP   72 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSS------CSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE
T ss_pred             CCEEEEEECCCCCEEEEEECCCC------CCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee
Confidence            68899999999998877654321      1122221 223566788888999999999999999888743  22211111


Q ss_pred             EccCCCEEEEEECCCeEEEEeCCCCceEEEe-eccc---cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeecc
Q psy8448         201 FSRDNSQILTASFDTYVRIHGLKSGKMLKEF-RGHS---SFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSL  276 (482)
Q Consensus       201 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  276 (482)
                       ...+..+++++.++.|+.+|.++++.+... ....   .....+.....+..++++..++.|..+|.++|+.+......
T Consensus        73 -~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~  151 (238)
T PF13360_consen   73 -VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG  151 (238)
T ss_dssp             -EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred             -eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence             224567777778899999999999998874 3221   11122233334788888998999999999999988777642


Q ss_pred             CCCc-cc------eeEEEEcCCCCCEEEEEeCCCe-EEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         277 GASD-IA------VNSIHLLPKNTEHFVVCNKTNT-VVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       277 ~~~~-~~------v~~i~~~~~~~~~l~~~~~d~~-i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      .... ..      +..-....+  ..+++++.++. +.+ |. +++.+.... .   .. +.. ....++..|++++.++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~g~~~~~-d~~tg~~~w~~~-~---~~-~~~-~~~~~~~~l~~~~~~~  222 (238)
T PF13360_consen  152 EPRGSSPISSFSDINGSPVISD--GRVYVSSGDGRVVAV-DLATGEKLWSKP-I---SG-IYS-LPSVDGGTLYVTSSDG  222 (238)
T ss_dssp             TT-SS--EEEETTEEEEEECCT--TEEEEECCTSSEEEE-ETTTTEEEEEEC-S---S--ECE-CEECCCTEEEEEETTT
T ss_pred             CCCCCcceeeecccccceEEEC--CEEEEEcCCCeEEEE-ECCCCCEEEEec-C---CC-ccC-CceeeCCEEEEEeCCC
Confidence            1111 11      112222223  36666777775 555 88 565443222 1   11 222 1456788888888999


Q ss_pred             EEE
Q psy8448         348 VLV  350 (482)
Q Consensus       348 ~i~  350 (482)
                      .+.
T Consensus       223 ~l~  225 (238)
T PF13360_consen  223 RLY  225 (238)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

...

>KOG3914|consensus

Probab=99.00  E-value=1e-08  Score=89.29  Aligned_cols=163  Identities=18%  Similarity=0.243  Sum_probs=116.7

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee--cccCCCeEEEEEccCCCEEEEEECCC---eEEEEeCCCCc
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE--KAHSLGVTCIQFSRDNSQILTASFDT---YVRIHGLKSGK  226 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~  226 (482)
                      ....+..++.++++|.+..+....++++........+.  ..-...-+++.|..+...+.++..-|   .+.+|....+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34455677888899998888887777775543211110  12233345555655555555554444   44555544433


Q ss_pred             eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         227 MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       227 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                       ...+.+|-..++.++|+||+++|+++..|..|++-.......+..+..  +|..-|..++.-++  ..|++++.|++++
T Consensus       144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~~--~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTDN--YLLLSGSGDKTLR  218 (390)
T ss_pred             -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeeccC--ceeeecCCCCcEE
Confidence             344567999999999999999999999999999998887666666653  79999999999887  5699999999999


Q ss_pred             EEEc-CCcEEEEec
Q psy8448         307 IMNM-QGQIVRSLS  319 (482)
Q Consensus       307 i~d~-~~~~~~~~~  319 (482)
                      +||+ +|+.+.++.
T Consensus       219 ~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  219 LWDITSGKLLDTCD  232 (390)
T ss_pred             EEecccCCcccccc
Confidence            9999 677765554

>KOG1912|consensus

Probab=98.95  E-value=5.3e-08  Score=91.80  Aligned_cols=155  Identities=17%  Similarity=0.258  Sum_probs=127.2

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC------------CEEEEEECCCeE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN------------SQILTASFDTYV  217 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~------------~~l~~~~~dg~i  217 (482)
                      ...-.++.|+|.| +||.|+.. .|.+.|..+-+.+..+ ..|...|+.+.|.|..            -.|+++...|.|
T Consensus        15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             cccccccccCccc-eEEEecCc-eEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            3456788999988 57777654 7999999999999888 5788999999998721            257788888999


Q ss_pred             EEEeCCCCceEEEeeccccceeEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC
Q psy8448         218 RIHGLKSGKMLKEFRGHSSFVNDITFTA---DG-HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT  293 (482)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~~i~~l~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  293 (482)
                      .+||...+..+..+..|..++..++|-+   +. ..|++-.....+.+|+..+|+......   .......++.+.|-..
T Consensus        92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~---ys~~iLs~f~~DPfd~  168 (1062)
T KOG1912|consen   92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD---YSHEILSCFRVDPFDS  168 (1062)
T ss_pred             EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc---cCCcceeeeeeCCCCc
Confidence            9999999988888999999999999976   33 456677777899999999999887765   5556778899999888


Q ss_pred             CEEEEEeCCCeEEEEEc
Q psy8448         294 EHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       294 ~~l~~~~~d~~i~i~d~  310 (482)
                      +.+..-+..|.+.+-+.
T Consensus       169 rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  169 RHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             ceEEEEccCceEEEEec
Confidence            88888888888877765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.95  E-value=1.1e-06  Score=76.09  Aligned_cols=210  Identities=15%  Similarity=0.159  Sum_probs=142.4

Q ss_pred             ccEEEEEEcC-CCCEEEEEeCCC-cEEEEEcCCCeEeEEeecccCCC--eEEEEEccCCCEEEEEEC-----CCeEEEEe
Q psy8448         151 EAVMSLAYSR-DSEMLASGSQSG-KVKIWKIATGQCLRKLEKAHSLG--VTCIQFSRDNSQILTASF-----DTYVRIHG  221 (482)
Q Consensus       151 ~~i~~l~~~~-~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l~~~~~-----dg~i~i~d  221 (482)
                      .....++.+| ....++.+-.-| ...+||..+++....+. .....  --.-.|++||++|++.-.     .|.|-|||
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            3456788889 555566666555 46789999999887773 22222  224689999999998643     47899999


Q ss_pred             CC-CCceEEEeeccccceeEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceeeeeecc-CCCcc
Q psy8448         222 LK-SGKMLKEFRGHSSFVNDITFTADGHSVLSASS------------------DGTVKMWNLKTTECTSTFKSL-GASDI  281 (482)
Q Consensus       222 ~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~~-~~~~~  281 (482)
                      .. +.+.+.++..|.-....+.+.||++.|+++..                  +..+.+.|..+|+.+...... ..|..
T Consensus        84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            98 66778888888888889999999988877532                  234677788888877765421 24677


Q ss_pred             ceeEEEEcCCCCCEEEEEeCCC-------eEEEEEcCCcEEEEecCC----cccCcCEEEEEEcCCCCEEEEEeC-CcEE
Q psy8448         282 AVNSIHLLPKNTEHFVVCNKTN-------TVVIMNMQGQIVRSLSSG----KREGGDFLCCTTSPRGEWIYCVGE-DMVL  349 (482)
Q Consensus       282 ~v~~i~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~g~~l~~~~~-dg~i  349 (482)
                      .|..+++.++| ..++..-..|       -+-+++. +..+..+...    ..-...+-+++++++|.++++.+- .|.+
T Consensus       164 SiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  164 SIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             ceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            89999999998 4444433322       2333333 2223333321    112567889999999998876665 5566


Q ss_pred             EEEeehhhhhhhcccccceeeeecccceeecc
Q psy8448         350 VVRLIQQYLKESNLMKTLQCLQEETGVSLNTV  381 (482)
Q Consensus       350 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      .                  +|+..+|..+...
T Consensus       242 ~------------------~~d~~tg~~~~~~  255 (305)
T PF07433_consen  242 A------------------VWDAATGRLLGSV  255 (305)
T ss_pred             E------------------EEECCCCCEeecc
Confidence            6                  7888888544433

>KOG2066|consensus

Probab=98.95  E-value=7.2e-08  Score=91.42  Aligned_cols=185  Identities=15%  Similarity=0.257  Sum_probs=132.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      .+.++|++++  +++|+-|+.+|.|++++.+..- ...+.         |...      ..+|.++++|+.||+|.|-.+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~---------~s~~------~~~Gey~asCS~DGkv~I~sl  100 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFD---------HSSS------ILEGEYVASCSDDGKVVIGSL  100 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccc---------cccc------ccCCceEEEecCCCcEEEeec
Confidence            4567888887  7799999999999999875332 11111         1222      558999999999999999999


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccC-----CCEEEEEECCCeEEEEeCCC--CceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRD-----NSQILTASFDTYVRIHGLKS--GKMLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      .+.+...++.  ...++.+++++|+     .+++++|+..| +.++.-+=  .+....+..-.++|.+++|.  |++++-
T Consensus       101 ~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAW  175 (846)
T KOG2066|consen  101 FTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAW  175 (846)
T ss_pred             cCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEE
Confidence            8888777663  6678999999997     46799999888 77765321  11122455567899999995  788888


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCC---CccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      ++.+| |++||+.+++.+..++....   ...--..+.|.++.  .++.|-.| +|++..++
T Consensus       176 and~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  176 ANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWGD-SVKICSIK  233 (846)
T ss_pred             ecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEecCC-eEEEEEEe
Confidence            88888 99999999887766653221   11223457777763  45555444 67777774

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.94  E-value=7e-07  Score=84.12  Aligned_cols=214  Identities=13%  Similarity=0.122  Sum_probs=132.7

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEE-EEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMS-LAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~-l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      +..++.++.+|.+..+|.++|+..-......         .+.+ ...  .+..++.++.++.+..+|.++|+.+..+..
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---------~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  188 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---------EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNL  188 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC---------ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence            4567778889999999999999876655432         1111 111  244677788899999999999999887742


Q ss_pred             ccCC----CeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecccc-------ceeEEEEcC--CCCEEEEEeCCC
Q psy8448         191 AHSL----GVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSS-------FVNDITFTA--DGHSVLSASSDG  257 (482)
Q Consensus       191 ~~~~----~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~i~~l~~~~--~~~~l~~~~~dg  257 (482)
                      ....    ...+...  .+..++.++.+|.+..+|..+++.+........       ....+.-+|  .+..++.++.+|
T Consensus       189 ~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g  266 (394)
T PRK11138        189 DVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG  266 (394)
T ss_pred             CCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC
Confidence            2110    0011111  234577788899999999999987665431110       011111222  345677788899


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR  336 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~  336 (482)
                      .+..+|..+++.+.....  .   ....+..  .+ ..+++++.++.+..+|. +|+.+-......  .....+...  .
T Consensus       267 ~l~ald~~tG~~~W~~~~--~---~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~sp~v--~  334 (394)
T PRK11138        267 NLVALDLRSGQIVWKREY--G---SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQSDLL--HRLLTAPVL--Y  334 (394)
T ss_pred             eEEEEECCCCCEEEeecC--C---CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEcccccC--CCcccCCEE--E
Confidence            999999999987655431  1   1112222  23 56777888999999999 566554333211  111122222  2


Q ss_pred             CCEEEEEeCCcEEE
Q psy8448         337 GEWIYCVGEDMVLV  350 (482)
Q Consensus       337 g~~l~~~~~dg~i~  350 (482)
                      +..|+.++.+|.++
T Consensus       335 ~g~l~v~~~~G~l~  348 (394)
T PRK11138        335 NGYLVVGDSEGYLH  348 (394)
T ss_pred             CCEEEEEeCCCEEE
Confidence            56788899999999

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.94  E-value=7.3e-07  Score=82.42  Aligned_cols=223  Identities=17%  Similarity=0.267  Sum_probs=134.4

Q ss_pred             cCCCCEEEEEe---------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         109 SPDGQYLITGS---------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       109 s~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      |||+++++...         ..+.+.|||+++++.......         ...+....|+|+|+.++... ++.|.+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---------~~~~~~~~~sP~g~~~~~v~-~~nly~~~~   70 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---------PPKLQDAKWSPDGKYIAFVR-DNNLYLRDL   70 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---------ETTBSEEEE-SSSTEEEEEE-TTEEEEESS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---------ccccccceeecCCCeeEEEe-cCceEEEEC
Confidence            68888887642         246799999999876554433         25688899999999999885 568999998


Q ss_pred             CCCeEeEEeeccc----------------CCCeEEEEEccCCCEEEEEECCC----------------------------
Q psy8448         180 ATGQCLRKLEKAH----------------SLGVTCIQFSRDNSQILTASFDT----------------------------  215 (482)
Q Consensus       180 ~~~~~~~~~~~~~----------------~~~v~~i~~~~~~~~l~~~~~dg----------------------------  215 (482)
                      .++...+....+.                -..-..+-|+||+++|+....|.                            
T Consensus        71 ~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk  150 (353)
T PF00930_consen   71 ATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK  150 (353)
T ss_dssp             TTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred             CCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence            7775443332120                11235688999999988765331                            


Q ss_pred             --------eEEEEeCCCCceEE-E-e---eccccceeEEEEcCCCCEEEEE--eCC---CcEEEEECCCCceeeeeeccC
Q psy8448         216 --------YVRIHGLKSGKMLK-E-F---RGHSSFVNDITFTADGHSVLSA--SSD---GTVKMWNLKTTECTSTFKSLG  277 (482)
Q Consensus       216 --------~i~i~d~~~~~~~~-~-~---~~~~~~i~~l~~~~~~~~l~~~--~~d---g~i~i~d~~~~~~~~~~~~~~  277 (482)
                              .+.++|+.+++... . .   ......+..+.|.++++.|+..  ..+   ..+.++|..++.+........
T Consensus       151 ~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~  230 (353)
T PF00930_consen  151 AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS  230 (353)
T ss_dssp             TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES
T ss_pred             CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC
Confidence                    24445555554321 1 1   1234567889999998844443  332   237777888776544443211


Q ss_pred             C-CccceeEEEEc-CCCCCEEEEEeCCCe--EEEEEcCCcEEEEecCCcccCcCEEE-EEEcCCCCEEEEEe
Q psy8448         278 A-SDIAVNSIHLL-PKNTEHFVVCNKTNT--VVIMNMQGQIVRSLSSGKREGGDFLC-CTTSPRGEWIYCVG  344 (482)
Q Consensus       278 ~-~~~~v~~i~~~-~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~~l~~~~  344 (482)
                      . --..-....+. +++..++.....+|.  |.+++..+.....+..+   ...|.. +.++++++.|+.-+
T Consensus       231 ~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G---~~~V~~i~~~d~~~~~iyf~a  299 (353)
T PF00930_consen  231 DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG---DWEVTSILGWDEDNNRIYFTA  299 (353)
T ss_dssp             SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S---SS-EEEEEEEECTSSEEEEEE
T ss_pred             CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC---ceeecccceEcCCCCEEEEEe
Confidence            1 11122345554 777677777778775  44555567777777655   556644 77888887776433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4714|consensus

Probab=98.92  E-value=2.9e-08  Score=81.37  Aligned_cols=160  Identities=14%  Similarity=0.150  Sum_probs=103.5

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceee-ccccccccccccccccEEEEEEcCCCCEEEEEe-----CC
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRK-DLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-----QS  171 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-----~d  171 (482)
                      .|+++-.+-+.+-.++.++++..||.+.+++.++..... .+...       | ..-.+.++...++.+.++.     .-
T Consensus        87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~-------~-~~~as~~~~~~~~~i~s~~~g~~n~~  158 (319)
T KOG4714|consen   87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSI-------H-SGSASRKICRHGNSILSGGCGNWNAQ  158 (319)
T ss_pred             ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccc-------c-ccccccceeecccEEecCCcceEeec
Confidence            444444444455567789999999999999987621111 11110       1 1112223333445444432     22


Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCce-EEEeeccccceeEEEEcC-CCC
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGKM-LKEFRGHSSFVNDITFTA-DGH  248 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~l~~~~-~~~  248 (482)
                      +..+.|+++..+.+..- ......|.+++-+|. ...+++|+.||.+-+||.++... ...++.|+.+|..+-|+| ++.
T Consensus       159 d~~~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~  237 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE  237 (319)
T ss_pred             cceeeeccccccccccc-ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence            35566666543332222 122344899999994 45677889999999999998753 345678999999999999 567


Q ss_pred             EEEEEeCCCcEEEEECCC
Q psy8448         249 SVLSASSDGTVKMWNLKT  266 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~  266 (482)
                      .|+++++||.+-.||..+
T Consensus       238 ~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  238 HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             heeEecCCCcEEEEcCCC
Confidence            899999999999999764

>KOG2695|consensus

Probab=98.90  E-value=8.6e-09  Score=87.84  Aligned_cols=161  Identities=13%  Similarity=0.219  Sum_probs=117.9

Q ss_pred             EEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-----ceEEEeeccccceeE
Q psy8448         166 ASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-----KMLKEFRGHSSFVND  240 (482)
Q Consensus       166 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~  240 (482)
                      ++.+.+..|-+-|++++-.. .+  ...+.|.++.|...++.++.|+.+|.|..+|++..     .+...+. |...|++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf--~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SF--QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeeccccc-cc--ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence            45566778888898877533 23  25677999999988899999999999999999875     3344444 8999999


Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEECCCCce---eeeeeccCCCcccee--EEEEcCCCCCEEEEEeCCCeEEEEEc-CCc
Q psy8448         241 ITFTA-DGHSVLSASSDGTVKMWNLKTTEC---TSTFKSLGASDIAVN--SIHLLPKNTEHFVVCNKTNTVVIMNM-QGQ  313 (482)
Q Consensus       241 l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~--~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~  313 (482)
                      +..-. ++++|++.+.+|+|++||++.-++   +..+.   +|-..-.  -+...+.. ..+++++.|...+||.+ .|.
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe---GHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE---GHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeee---ccccccccccccccccc-ceEEEccCeeEEEEEecccCc
Confidence            98877 788999999999999999998777   55555   5543222  23334444 67888999999999999 588


Q ss_pred             EEEEecCCccc-CcCEEEEEEc
Q psy8448         314 IVRSLSSGKRE-GGDFLCCTTS  334 (482)
Q Consensus       314 ~~~~~~~~~~~-~~~v~~~~~~  334 (482)
                      .+.++...... ...+.+++|.
T Consensus       380 Ll~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  380 LLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eeeccCCCCccccccccceehh
Confidence            77777654221 2244455553

>KOG1832|consensus

Probab=98.84  E-value=3.3e-09  Score=101.08  Aligned_cols=217  Identities=18%  Similarity=0.266  Sum_probs=154.2

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC--
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS--  171 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d--  171 (482)
                      .....|+...+|++|+-+.+.|+.|+..|.|+++++.+|........        |.++|+-+.-+.+|..+++.+.-  
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc--------H~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC--------HQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc--------cccccccccccCCcceeeeeccccC
Confidence            34457889999999999999999999999999999999987665544        47899999999999987776543  


Q ss_pred             CcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe-e---ccccceeEEEEcCC
Q psy8448         172 GKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF-R---GHSSFVNDITFTAD  246 (482)
Q Consensus       172 g~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~i~~l~~~~~  246 (482)
                      .-..+|++.+ +.....+     ..-.++.|+...+.-+.|+......+||++++.++.++ .   +....-++..|+|+
T Consensus      1167 PlsaLW~~~s~~~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred             chHHHhccccccCccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence            2467899854 2233333     23467888876555566666678999999999877663 2   12223367889999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccC
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREG  325 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~  325 (482)
                      ..+++   .||  .+||++..+.+..|..+.    .-..-.|+|.| ..++..+     .|||+ +-+.+..+..-    
T Consensus      1242 D~LIl---ndG--vLWDvR~~~aIh~FD~ft----~~~~G~FHP~g-~eVIINS-----EIwD~RTF~lLh~VP~L---- 1302 (1516)
T KOG1832|consen 1242 DTLIL---NDG--VLWDVRIPEAIHRFDQFT----DYGGGGFHPSG-NEVIINS-----EIWDMRTFKLLHSVPSL---- 1302 (1516)
T ss_pred             cceEe---eCc--eeeeeccHHHHhhhhhhe----ecccccccCCC-ceEEeec-----hhhhhHHHHHHhcCccc----
Confidence            88776   455  579999988887775332    12234689998 4444433     48998 45555555432    


Q ss_pred             cCEEEEEEcCCCCEEEEE
Q psy8448         326 GDFLCCTTSPRGEWIYCV  343 (482)
Q Consensus       326 ~~v~~~~~~~~g~~l~~~  343 (482)
                       .-..+.|+..|..++..
T Consensus      1303 -dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1303 -DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             -cceEEEeccCccchhhh
Confidence             33568888888877643

>KOG3617|consensus

Probab=98.83  E-value=3.6e-07  Score=87.23  Aligned_cols=109  Identities=18%  Similarity=0.320  Sum_probs=87.5

Q ss_pred             EEEEEcCCCCEEEEEe----CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         104 ECARFSPDGQYLITGS----VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       104 ~~~~~s~~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      +-..|+|...++|.++    ..|.|.||- ++|+.......+         -.+++++|+|..-.|+.|-.-|.+.+|..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P---------~hatSLCWHpe~~vLa~gwe~g~~~v~~~   88 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP---------VHATSLCWHPEEFVLAQGWEMGVSDVQKT   88 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc---------eehhhhccChHHHHHhhccccceeEEEec
Confidence            3457999999998876    568899994 677654444333         24678999999888888888999999997


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK  223 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~  223 (482)
                      .+.+.-... ..|..+|..+.|+++|..++++..-|.|.+|...
T Consensus        89 ~~~e~htv~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   89 NTTETHTVV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCceeeeec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            665544443 7899999999999999999999999999999775

>KOG3617|consensus

Probab=98.82  E-value=9.1e-08  Score=91.15  Aligned_cols=112  Identities=13%  Similarity=0.273  Sum_probs=91.0

Q ss_pred             cEEEEEEcCCCCEEEEEe----CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce
Q psy8448         152 AVMSLAYSRDSEMLASGS----QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM  227 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~  227 (482)
                      .-+-.+|+|...++++++    ..|.|.||- ++|++.+...  ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            344567999999998886    458888885 5677554442  233467899999988889998899999999877776


Q ss_pred             EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy8448         228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT  266 (482)
Q Consensus       228 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~  266 (482)
                      -.....|..+|..+.|+++|..++++..-|.+.+|....
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            666677999999999999999999999999999998763

>KOG4649|consensus

Probab=98.82  E-value=1e-05  Score=66.99  Aligned_cols=216  Identities=13%  Similarity=0.092  Sum_probs=132.7

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA  191 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  191 (482)
                      ..+++.|+..+.+.--|..+|+..-.....         .+|.+-+.- -|++++.|+..|.+++.+.++|+....+...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---------VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC---------ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence            457778888899999999999876544333         223332222 4678999999999999999999888877433


Q ss_pred             cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--e
Q psy8448         192 HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE--C  269 (482)
Q Consensus       192 ~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~--~  269 (482)
                      ..-.+ .....+++..+..|+.|++.+..|.++..++.+.+-..+...+-+..|-...|..+...|.+.--..+...  .
T Consensus        93 ~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~  171 (354)
T KOG4649|consen   93 ETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTE  171 (354)
T ss_pred             hhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcce
Confidence            33222 23456689999999999999999999999988876544444455566633345555556665544444331  1


Q ss_pred             eeeeeccCCCccceeE--EEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEE-EEEc-CCCCEEEEEeC
Q psy8448         270 TSTFKSLGASDIAVNS--IHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLC-CTTS-PRGEWIYCVGE  345 (482)
Q Consensus       270 ~~~~~~~~~~~~~v~~--i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~-~~~~-~~g~~l~~~~~  345 (482)
                      ...+    ....++.+  +..   + ..+..++-||.+.-++-.|+.+.++..    .++|.. -+-+ |..+.+..+.+
T Consensus       172 ~w~~----~~~~PiF~splcv---~-~sv~i~~VdG~l~~f~~sG~qvwr~~t----~GpIf~~Pc~s~Ps~q~i~~~~~  239 (354)
T KOG4649|consen  172 FWAA----TRFGPIFASPLCV---G-SSVIITTVDGVLTSFDESGRQVWRPAT----KGPIFMEPCESRPSCQQISLENE  239 (354)
T ss_pred             ehhh----hcCCccccCceec---c-ceEEEEEeccEEEEEcCCCcEEEeecC----CCceecccccCCCcceEEEEecC
Confidence            1111    11122221  111   1 345556678888877776766665543    233321 1222 44455655555


Q ss_pred             CcEEE
Q psy8448         346 DMVLV  350 (482)
Q Consensus       346 dg~i~  350 (482)
                      +....
T Consensus       240 ~Cf~~  244 (354)
T KOG4649|consen  240 NCFCA  244 (354)
T ss_pred             CeEEE
Confidence            54444

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.78  E-value=8e-06  Score=77.68  Aligned_cols=233  Identities=11%  Similarity=0.126  Sum_probs=141.5

Q ss_pred             EEEEeCCCeEEEEecCCCceeecccccccccccc--------------c------cccEE--EEEEc---CCCCEEEEEe
Q psy8448         115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML--------------M------EEAVM--SLAYS---RDSEMLASGS  169 (482)
Q Consensus       115 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--------------h------~~~i~--~l~~~---~~~~~l~~~~  169 (482)
                      +.+|+..|.|+|+-+.+++.+..+..-......+              +      .+...  .+++.   .||++|+.-.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find  148 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND  148 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence            5678889999999999888776654321111000              0      00000  11111   1577787766


Q ss_pred             C-CCcEEEEEcCCCeEeEEeecccCCCeEEEEEc--cCCCEEEEE------------------ECCCeEEEEeCCCCceE
Q psy8448         170 Q-SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS--RDNSQILTA------------------SFDTYVRIHGLKSGKML  228 (482)
Q Consensus       170 ~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~------------------~~dg~i~i~d~~~~~~~  228 (482)
                      . +..|...++...++-..+..+....+..+.|-  |+..+++.+                  -..+.+.+.|.++.+..
T Consensus       149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~  228 (635)
T PRK02888        149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA  228 (635)
T ss_pred             CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence            3 56677777766655544433333344444432  333333333                  23356777788877766


Q ss_pred             EEeeccccceeEEEEcCCCCEEEEEe----------------------------------------CCCcEEEEECCC--
Q psy8448         229 KEFRGHSSFVNDITFTADGHSVLSAS----------------------------------------SDGTVKMWNLKT--  266 (482)
Q Consensus       229 ~~~~~~~~~i~~l~~~~~~~~l~~~~----------------------------------------~dg~i~i~d~~~--  266 (482)
                      .++.- .+....++++|+|+++++.+                                        .++.|.+.|.++  
T Consensus       229 ~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~  307 (635)
T PRK02888        229 WQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAA  307 (635)
T ss_pred             EEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccc
Confidence            66553 22446678888888877665                                        124477777776  


Q ss_pred             ---CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-c------------EEEEecCCcccCcCEEE
Q psy8448         267 ---TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG-Q------------IVRSLSSGKREGGDFLC  330 (482)
Q Consensus       267 ---~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-~------------~~~~~~~~~~~~~~v~~  330 (482)
                         .+.+..+    .-......+.++|+|..+++++..++++.+.|+.. +            .......    ......
T Consensus       308 ~~~~~v~~yI----PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLH  379 (635)
T PRK02888        308 NAGSALTRYV----PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLH  379 (635)
T ss_pred             cCCcceEEEE----ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcce
Confidence               2333333    23445678999999966666777799999999943 2            1233332    223356


Q ss_pred             EEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         331 CTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      .+|+++|....+-.-|..|..|++..
T Consensus       380 TaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        380 TAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEECCCCCEEEeEeecceeEEEehHH
Confidence            89999998888888999999888775

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=3.3e-09  Score=62.73  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             cccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         446 MKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       446 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      .++..+.+|.+.|++++|+|++++|+|++.|++|++|
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vw   38 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVW   38 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEE
Confidence            3455899999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.78  E-value=1.2e-05  Score=70.20  Aligned_cols=187  Identities=19%  Similarity=0.196  Sum_probs=121.2

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      +++.+++++.++.|..||..+|+............     ..   .  ...+..+++++.++.+..+|..+|+.+.....
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-----~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~  104 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-----GA---P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYL  104 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-----SG---E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-----ce---e--eecccccccccceeeeEecccCCcceeeeecc
Confidence            46677777889999999999999877666532110     11   1  22455677777888999999999999888422


Q ss_pred             ccC---CCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccc----------eeEEEEcCCCCEEEEEeCCC
Q psy8448         191 AHS---LGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSF----------VNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       191 ~~~---~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------i~~l~~~~~~~~l~~~~~dg  257 (482)
                      ...   ...........+..++++..++.|..+|+++|+.+.........          +..-....++ .++.++.++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g  183 (238)
T PF13360_consen  105 TSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDG  183 (238)
T ss_dssp             -SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTS
T ss_pred             ccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCC
Confidence            221   11223333334788999998999999999999998877653322          1122222244 677777778


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEE
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIV  315 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~  315 (482)
                      .+..+|+.+++......     ...+... ....+ ..+++++.++.+..||+ +|+.+
T Consensus       184 ~~~~~d~~tg~~~w~~~-----~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  184 RVVAVDLATGEKLWSKP-----ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             SEEEEETTTTEEEEEEC-----SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTTEEE
T ss_pred             eEEEEECCCCCEEEEec-----CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCCCEE
Confidence            64444999998553221     1222221 23445 56777779999999999 56654

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.76  E-value=2.3e-07  Score=78.22  Aligned_cols=204  Identities=15%  Similarity=0.347  Sum_probs=138.7

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-E----eEEeecccC------------CCeEEEEEccCC--CEEEE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ-C----LRKLEKAHS------------LGVTCIQFSRDN--SQILT  210 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~----~~~~~~~~~------------~~v~~i~~~~~~--~~l~~  210 (482)
                      .+.|+++.|...|.||++|...|.|.++.-.... +    ...+ +.|.            ..|..+.|..++  ..++.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3579999999999999999999999999754322 1    1112 2222            347788887644  45777


Q ss_pred             EECCCeEEEEeCCCCc-------------------e------------------E-----EEe-eccccceeEEEEcCCC
Q psy8448         211 ASFDTYVRIHGLKSGK-------------------M------------------L-----KEF-RGHSSFVNDITFTADG  247 (482)
Q Consensus       211 ~~~dg~i~i~d~~~~~-------------------~------------------~-----~~~-~~~~~~i~~l~~~~~~  247 (482)
                      .+.|.+|++|.+....                   +                  +     +.+ ..|...|.++.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7889999999875320                   0                  0     001 3466778899999988


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeccCCCc-----cceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcE-----EEE
Q psy8448         248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASD-----IAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI-----VRS  317 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~  317 (482)
                      ..++++. |=.|.+|++.-...-..+....+|+     .-|++..|+|..-.++.-.+..|.|++-|++...     ...
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            8777654 6679999987644333332222333     4578899999887888889999999999996221     111


Q ss_pred             ecC---C------cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         318 LSS---G------KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       318 ~~~---~------~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      +..   +      ..-...|..+.|+++|+++++-+ --++.|||.+.
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm  310 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNM  310 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccc
Confidence            110   0      00135677899999999988654 36899998763

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.76  E-value=1.2e-05  Score=68.96  Aligned_cols=200  Identities=13%  Similarity=0.206  Sum_probs=121.2

Q ss_pred             cccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc--
Q psy8448         150 EEAVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK--  226 (482)
Q Consensus       150 ~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--  226 (482)
                      ...+..++|+|+.+ ++++....+.|..++. +|+.++.+........-.|++..++.++++.-.++.+.++++....  
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            45699999999755 5555667788888886 5788888754445678899998777766666668999999884321  


Q ss_pred             ----eEEEee-----ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC---Cceeeeee-----ccCCCccceeEEEEc
Q psy8448         227 ----MLKEFR-----GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT---TECTSTFK-----SLGASDIAVNSIHLL  289 (482)
Q Consensus       227 ----~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~-----~~~~~~~~v~~i~~~  289 (482)
                          ....+.     .+...+-.++|+|.++.|+++-...-..+|.+..   ........     ........+.+++++
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~  179 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD  179 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence                112221     2445689999999988888887776677777654   21111111     011234467899999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcc------cCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448         290 PKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKR------EGGDFLCCTTSPRGEWIYCVGEDMVLVV  351 (482)
Q Consensus       290 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~g~~l~~~~~dg~i~i  351 (482)
                      |..+.+++.+.....|..+|.+|+.+..+.-...      .-...-.++|.++|+ |+..++-+..++
T Consensus       180 p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~  246 (248)
T PF06977_consen  180 PRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYR  246 (248)
T ss_dssp             TTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEE
T ss_pred             CCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEE
Confidence            9987888888899999999999987776654321      113456899999985 555667776663

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1920|consensus

Probab=98.75  E-value=6.6e-06  Score=82.15  Aligned_cols=239  Identities=12%  Similarity=0.094  Sum_probs=150.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ...|.++.|..+++.++.+..+|.|.+-|.++......-..         ...|.+++|+||++.++..+.++++.+-.-
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---------d~GI~aaswS~Dee~l~liT~~~tll~mT~  138 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---------DNGISAASWSPDEELLALITGRQTLLFMTK  138 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---------cCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence            36899999999999999999999999998887654332221         478999999999999999988887766542


Q ss_pred             ----CCCeEe-------------------EEeec-----------c---------cCCCeEEEEEccCCCEEEEE-----
Q psy8448         180 ----ATGQCL-------------------RKLEK-----------A---------HSLGVTCIQFSRDNSQILTA-----  211 (482)
Q Consensus       180 ----~~~~~~-------------------~~~~~-----------~---------~~~~v~~i~~~~~~~~l~~~-----  211 (482)
                          -..+.+                   ..+..           .         ....=++|.|--||+++++.     
T Consensus       139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~  218 (1265)
T KOG1920|consen  139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE  218 (1265)
T ss_pred             cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence                000000                   11100           0         01112358899999999873     


Q ss_pred             ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeeeeeccC-CCccceeEEE
Q psy8448         212 SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS---SDGTVKMWNLKTTECTSTFKSLG-ASDIAVNSIH  287 (482)
Q Consensus       212 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~  287 (482)
                      .....|++||-+ +..-..-....+.-.+++|-|.|..+++..   .|+.|.+|.-. |-.-..+.... ....++..++
T Consensus       219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~  296 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELA  296 (1265)
T ss_pred             CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheee
Confidence            222789999976 543332223334446899999999988753   45679898844 33222222111 3334499999


Q ss_pred             EcCCCCCEEEE---EeCCCeEEEEEcCCcE---EEEecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEeeh
Q psy8448         288 LLPKNTEHFVV---CNKTNTVVIMNMQGQI---VRSLSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       288 ~~~~~~~~l~~---~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~~  355 (482)
                      |+.++ .+|++   ......|++|-..+-.   -..+...   ....  +.|+|.. ..|.+-..+|...++++.
T Consensus       297 Wns~s-diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~---~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  297 WNSNS-DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS---QKAL--LMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             ecCCC-CceeeeecccccceEEEEEecCeEEEEEEEEecc---cccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence            99998 77776   4444559999884321   1111111   1111  6777753 234444466766666553

>KOG0882|consensus

Probab=98.75  E-value=1.1e-06  Score=77.99  Aligned_cols=259  Identities=15%  Similarity=0.146  Sum_probs=169.6

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-CCcEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-SGKVK  175 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-dg~i~  175 (482)
                      +-|.+.|+.+..+ ..+++.+++.||.++.|.-..-...     .....+..|-..|.+++.+.++..+.+.+. |..++
T Consensus         6 ymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGv-----EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~K   79 (558)
T KOG0882|consen    6 YMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGV-----EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVK   79 (558)
T ss_pred             hcccceeeeEeee-hhheEEeeecchhhhhcCCCCccce-----eehhhhHHHHHHHHhhhccccceeEeeccCccccee
Confidence            4688888877655 4569999999999999974321111     111223446788999999999999999777 99999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCC--CEEE-EEECCCeEEEEeCCCCce--EEEeeccccceeEEEEcCCCCEE
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDN--SQIL-TASFDTYVRIHGLKSGKM--LKEFRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~-~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l  250 (482)
                      ++|+++-..+..+....--...+...++..  ..|+ ....++.+.++|-....+  ...-.-|..+|.++.+++-+..+
T Consensus        80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~  159 (558)
T KOG0882|consen   80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA  159 (558)
T ss_pred             EEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence            999987665543322221122222223321  1333 334578999999765442  23334589999999999999999


Q ss_pred             EEEeCCCcEEEEECCC------Cceeeeee------ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448         251 LSASSDGTVKMWNLKT------TECTSTFK------SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS  317 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~------~~~~~~~~------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  317 (482)
                      ++....|.|..|....      .+....++      ...-......++.|+|++ ..+.+-+.|..|++++. .|+.++.
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhh
Confidence            9999999999999873      11111111      111334567899999999 78888889999999998 4544433


Q ss_pred             ecCCc------------------------------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccc
Q psy8448         318 LSSGK------------------------------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTL  367 (482)
Q Consensus       318 ~~~~~------------------------------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  367 (482)
                      +....                              .....-+.+.|...|++|+.|+-=| |+                 
T Consensus       239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ik-----------------  300 (558)
T KOG0882|consen  239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IK-----------------  300 (558)
T ss_pred             hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EE-----------------
Confidence            32210                              0122334677888888888776544 23                 


Q ss_pred             eeeeecccceeecc
Q psy8448         368 QCLQEETGVSLNTV  381 (482)
Q Consensus       368 ~~~~~~~~~~~~~~  381 (482)
                       +.++.++.+.+.+
T Consensus       301 -vin~~tn~v~ri~  313 (558)
T KOG0882|consen  301 -VINLDTNTVVRIL  313 (558)
T ss_pred             -EEEeecCeEEEEe
Confidence             6677777555544

>KOG1008|consensus

Probab=98.71  E-value=2e-08  Score=92.65  Aligned_cols=203  Identities=19%  Similarity=0.278  Sum_probs=137.0

Q ss_pred             CCCcEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEe----CC
Q psy8448          99 SKSHVECARFSP--DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGS----QS  171 (482)
Q Consensus        99 h~~~v~~~~~s~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~----~d  171 (482)
                      ....+.|++++-  +...++.|..+|.|.+-.++...-.      ......+|...+++++|++ |.+.||+|-    .|
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnd  128 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRND  128 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc------cceecccccccccccccccccHHHHHhhhhhhccc
Confidence            345678888765  3457889999999999887754322      1122233568899999999 667777763    45


Q ss_pred             CcEEEEEcCCC----eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce-EEEeeccccceeEEEEcC-
Q psy8448         172 GKVKIWKIATG----QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM-LKEFRGHSSFVNDITFTA-  245 (482)
Q Consensus       172 g~i~iwd~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~l~~~~-  245 (482)
                      ..+.|||+.++    +....+..+......+++|..+.+.+++|.....+.++|++.... ...+  .+..+..+..+| 
T Consensus       129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~  206 (783)
T KOG1008|consen  129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPF  206 (783)
T ss_pred             CCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCC
Confidence            68999999876    112223222344566889988888899999899999999984321 1122  234566788888 


Q ss_pred             CCCEEEEEeCCCcEEEEE-CCCCce-eeeee-ccCCCccceeEEEEcCCCCCEEEEEeCC-CeEEEEEc
Q psy8448         246 DGHSVLSASSDGTVKMWN-LKTTEC-TSTFK-SLGASDIAVNSIHLLPKNTEHFVVCNKT-NTVVIMNM  310 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d-~~~~~~-~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~i~d~  310 (482)
                      .++++++-. ||.|.+|| .++-+. +..+. ........+..++|+|....++++...| ++|+++|+
T Consensus       207 ~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  207 SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            667666555 99999999 443221 12211 1112223589999999887788877765 78999998

>KOG1832|consensus

Probab=98.71  E-value=1.4e-08  Score=97.04  Aligned_cols=188  Identities=19%  Similarity=0.254  Sum_probs=135.7

Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC--eEEEE
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT--YVRIH  220 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg--~i~i~  220 (482)
                      -..+..|+...+|++|+-+.+.|+.|+..|.|+++++.+|.....+ ..|.++|+.+.-+.+|..+++.+.-.  -..+|
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHHh
Confidence            3445567889999999999999999999999999999999988888 79999999999999998877655433  47789


Q ss_pred             eCCC-CceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee-eccCCCccceeEEEEcCCCCCEEEE
Q psy8448         221 GLKS-GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF-KSLGASDIAVNSIHLLPKNTEHFVV  298 (482)
Q Consensus       221 d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~~  298 (482)
                      ++.+ +...+++.+    -.++.|+.....-+.|+......+||+.++....++ ....+....-+...|+|.. .+++-
T Consensus      1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D-~LIln 1247 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD-TLILN 1247 (1516)
T ss_pred             ccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc-ceEee
Confidence            8854 334444442    457888876544556666677999999998876663 2222333444778899987 55542


Q ss_pred             EeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         299 CNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       299 ~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                         ||  .+||.+ .+.+..|....    .-..-.|+|.|..++..++
T Consensus      1248 ---dG--vLWDvR~~~aIh~FD~ft----~~~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1248 ---DG--VLWDVRIPEAIHRFDQFT----DYGGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred             ---Cc--eeeeeccHHHHhhhhhhe----ecccccccCCCceEEeech
Confidence               33  589984 34455554321    2234579999999998775

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.70  E-value=5.7e-08  Score=57.35  Aligned_cols=39  Identities=49%  Similarity=0.953  Sum_probs=36.8

Q ss_pred             CceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         225 GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN  263 (482)
Q Consensus       225 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d  263 (482)
                      ++++.++.+|.+.|.+|+|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1920|consensus

Probab=98.70  E-value=4.5e-06  Score=83.28  Aligned_cols=201  Identities=11%  Similarity=0.132  Sum_probs=137.7

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeC----CC-
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL----KS-  224 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~----~~-  224 (482)
                      +..|.++.|..+.+.++.+..+|.|.+-|..+......  ..-..+|.+++|+||++.++..+..+++.+-+-    -. 
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            46899999999999999999999999998876543322  345678999999999999999988887776432    00 


Q ss_pred             ------------------CceEEEeecc---------------------ccceeEEEEcCCCCEEEEEe-----CCCcEE
Q psy8448         225 ------------------GKMLKEFRGH---------------------SSFVNDITFTADGHSVLSAS-----SDGTVK  260 (482)
Q Consensus       225 ------------------~~~~~~~~~~---------------------~~~i~~l~~~~~~~~l~~~~-----~dg~i~  260 (482)
                                        |+.-..|++.                     .+.=+.+.|.-||.++++..     ....|+
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence                              0111122211                     11124589999999998832     237899


Q ss_pred             EEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE---eCCCeEEEEEcCCcEEEEecCCccc-CcCEEEEEEcCC
Q psy8448         261 MWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC---NKTNTVVIMNMQGQIVRSLSSGKRE-GGDFLCCTTSPR  336 (482)
Q Consensus       261 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~  336 (482)
                      +||.+ +..-..-.   ....--.+++|-|.| .++++.   +.|+.|.+|..+|-.-..+...... ..++..++|+.+
T Consensus       226 V~drE-g~Lns~se---~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSE---PVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             Eeccc-chhhcccC---cccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence            99977 43322222   223345689999988 677664   3456799999876544433322221 334889999999


Q ss_pred             CCEEEE---EeCCcEEEEEeehhh
Q psy8448         337 GEWIYC---VGEDMVLVVRLIQQY  357 (482)
Q Consensus       337 g~~l~~---~~~dg~i~iw~~~~~  357 (482)
                      +..|++   ......|++|-..++
T Consensus       301 sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCceeeeecccccceEEEEEecCe
Confidence            999997   556666999977644

>KOG1275|consensus

Probab=98.69  E-value=6.1e-07  Score=86.44  Aligned_cols=183  Identities=14%  Similarity=0.229  Sum_probs=139.3

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      ++..++.|+-...+..+|+++.+.........        ..|+-|..  +++++.+|...|+|.+-|.++.+.+.++ .
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--------~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~-~  214 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--------SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF-D  214 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccC--------CceEEEEe--cCcEEEeecccceEEeecCCcCceeeee-e
Confidence            34567777777788889999888776655542        34665555  5789999999999999999999999999 7


Q ss_pred             ccCCCeEEEEEccCCCEEEEEEC---------CCeEEEEeCCCCceEEEeeccccceeEEEEcCC-CCEEEEEeCCCcEE
Q psy8448         191 AHSLGVTCIQFSRDNSQILTASF---------DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD-GHSVLSASSDGTVK  260 (482)
Q Consensus       191 ~~~~~v~~i~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~  260 (482)
                      .|.+.|..+..  .|+.|++++.         |..|+|||+|..+.+..+.-+.++ .-+.|.|. ...+++++..|...
T Consensus       215 aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  215 AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEeccccee
Confidence            99999987666  6888888875         457899999988877666544443 56777774 45688888999999


Q ss_pred             EEE---CCCCce-eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         261 MWN---LKTTEC-TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       261 i~d---~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      +-|   +.+... +..+.   .....+..+.+++.+ +.++.+..+|.|.+|.-+
T Consensus       292 ~vd~~~lsNP~~~~~~v~---p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVN---PNGSGISAFDISSNG-DALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             eccccccCCCccceeEEc---cCCCcceeEEecCCC-ceEEEecccCcEeeecCC
Confidence            999   433321 12221   445569999999999 899999999999999853

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.69  E-value=8.7e-06  Score=76.75  Aligned_cols=221  Identities=13%  Similarity=0.150  Sum_probs=136.4

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeecccccccc-ccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD-NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      +..++.++.+|.+..+|.++|+..-........ ...+...++.      .+..++.++.+|.+..+|..+++.......
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~  233 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRI  233 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE------ECCEEEEEcCCCEEEEEEccCChhhheecc
Confidence            345666778899999999999987665533110 0000111211      133577778899999999999987665421


Q ss_pred             ccCC------CeEEEEEcc--CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448         191 AHSL------GVTCIQFSR--DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW  262 (482)
Q Consensus       191 ~~~~------~v~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~  262 (482)
                      ....      ....+.-+|  .+..+++++.+|.+..+|..+++.+.+... . ....+..  .+..++.++.+|.+..+
T Consensus       234 ~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~-~~~~~~~--~~~~vy~~~~~g~l~al  309 (394)
T PRK11138        234 SQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-G-SVNDFAV--DGGRIYLVDQNDRVYAL  309 (394)
T ss_pred             ccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-C-CccCcEE--ECCEEEEEcCCCeEEEE
Confidence            1110      011111222  345677788899999999999988765432 1 1112222  45678888899999999


Q ss_pred             ECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE-EEEEcCCCCEE
Q psy8448         263 NLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL-CCTTSPRGEWI  340 (482)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~-~~~~~~~g~~l  340 (482)
                      |..+++.+-......  .....+....  + ..+++++.+|.+.+.|. +|+.+......   ...+. ...+  .+..|
T Consensus       310 d~~tG~~~W~~~~~~--~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~---~~~~~s~P~~--~~~~l  379 (394)
T PRK11138        310 DTRGGVELWSQSDLL--HRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGRFVAQQKVD---SSGFLSEPVV--ADDKL  379 (394)
T ss_pred             ECCCCcEEEcccccC--CCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCCEEEEEEcC---CCcceeCCEE--ECCEE
Confidence            999998655433111  1112222222  2 57888999999999999 78877666542   11122 2222  25588


Q ss_pred             EEEeCCcEEEEE
Q psy8448         341 YCVGEDMVLVVR  352 (482)
Q Consensus       341 ~~~~~dg~i~iw  352 (482)
                      +.++.||.++.+
T Consensus       380 ~v~t~~G~l~~~  391 (394)
T PRK11138        380 LIQARDGTVYAI  391 (394)
T ss_pred             EEEeCCceEEEE
Confidence            999999999843

>KOG4649|consensus

Probab=98.65  E-value=5e-05  Score=62.99  Aligned_cols=148  Identities=14%  Similarity=0.116  Sum_probs=93.9

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM-SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE  189 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~-~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  189 (482)
                      -|++++.|+..|.+++.+.++|.....+....         .|. .....+++..+..++.|++.+..|.++..++.+. 
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks-  131 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS-  131 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehh---------hhccceEEcCCCceEEEecCCCcEEEecccccceEEec-
Confidence            37789999999999999999997766555432         222 2234568889999999999999999999888876 


Q ss_pred             cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc--eEEEeeccccceeE--EEEcCCCCEEEEEeCCCcEEEEECC
Q psy8448         190 KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK--MLKEFRGHSSFVND--ITFTADGHSVLSASSDGTVKMWNLK  265 (482)
Q Consensus       190 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~--l~~~~~~~~l~~~~~dg~i~i~d~~  265 (482)
                      +....-..+-+..|-...|..+...|.+.--..+...  .+.... -.++|.+  ++.   +..+..++-||.+.-+| .
T Consensus       132 kcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~  206 (354)
T KOG4649|consen  132 KCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD-E  206 (354)
T ss_pred             ccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCceec---cceEEEEEeccEEEEEc-C
Confidence            3333334455666744456666667776666655442  111111 1223321  121   33455566677777777 5


Q ss_pred             CCceeeee
Q psy8448         266 TTECTSTF  273 (482)
Q Consensus       266 ~~~~~~~~  273 (482)
                      .|+.+..+
T Consensus       207 sG~qvwr~  214 (354)
T KOG4649|consen  207 SGRQVWRP  214 (354)
T ss_pred             CCcEEEee
Confidence            55555544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.60  E-value=4.8e-05  Score=69.54  Aligned_cols=214  Identities=16%  Similarity=0.184  Sum_probs=131.1

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcC---C----CCEEEEEeC----------CCcEEEEEcCCC--
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR---D----SEMLASGSQ----------SGKVKIWKIATG--  182 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~---~----~~~l~~~~~----------dg~i~iwd~~~~--  182 (482)
                      ..|++.|..+.+.+..+....       .+.+++++...   +    ..+|++|+.          .|.|.++++...  
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~-------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~   74 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP-------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE   74 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET-------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--
T ss_pred             cEEEEEeCCCCeEEEEEECCC-------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc
Confidence            468899988888877776664       24455555433   2    467887753          288999999884  


Q ss_pred             ---eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc-eEEEee-ccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         183 ---QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK-MLKEFR-GHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       183 ---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                         +..........++|++++-. ++ +|+++. ++.|.+|++...+ ....-. .....+.++..  .++++++|+...
T Consensus        75 ~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~  149 (321)
T PF03178_consen   75 NNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMK  149 (321)
T ss_dssp             ---EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSS
T ss_pred             cceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEccc
Confidence               33322234567889988876 33 455555 6899999998887 333222 12234555554  466899999888


Q ss_pred             cEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--------Cc-EEEEecCCcccCcC
Q psy8448         258 TVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--------GQ-IVRSLSSGKREGGD  327 (482)
Q Consensus       258 ~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--------~~-~~~~~~~~~~~~~~  327 (482)
                      .+.++..+. ......+.. ......++++.+.+++ +.++++..+|.+.++...        +. .+......+. ...
T Consensus       150 sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~  226 (321)
T PF03178_consen  150 SVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDI  226 (321)
T ss_dssp             SEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-
T ss_pred             CEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCc
Confidence            888885543 222222221 1345678899999777 699999999999998874        22 3333322221 455


Q ss_pred             EEEE---EEcC--CCC------EEEEEeCCcEEE
Q psy8448         328 FLCC---TTSP--RGE------WIYCVGEDMVLV  350 (482)
Q Consensus       328 v~~~---~~~~--~g~------~l~~~~~dg~i~  350 (482)
                      |+++   .+.|  .+.      .++.++.+|.|.
T Consensus       227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred             cceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence            6766   5555  222      488889999988

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2114|consensus

Probab=98.57  E-value=2.8e-05  Score=75.01  Aligned_cols=196  Identities=18%  Similarity=0.262  Sum_probs=126.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc-EEEEEEcCCCCEEEEEeCCC-----cEE
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA-VMSLAYSRDSEMLASGSQSG-----KVK  175 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~-i~~l~~~~~~~~l~~~~~dg-----~i~  175 (482)
                      .|+  +|++++..+|.|+.+|.|.+.+-. -+....+...        +.. |..+-...+.++|++.+.|+     .++
T Consensus        27 ~is--c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~--------~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk   95 (933)
T KOG2114|consen   27 AIS--CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAY--------EQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK   95 (933)
T ss_pred             cee--EEcCCCceEEEeeccccEEEeccc-ceeeehheec--------chhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence            444  467889999999999999888732 2222333322        333 44443443446888877664     489


Q ss_pred             EEEcCCC------eEe---EEee---cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC----CCceEEEeecccccee
Q psy8448         176 IWKIATG------QCL---RKLE---KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK----SGKMLKEFRGHSSFVN  239 (482)
Q Consensus       176 iwd~~~~------~~~---~~~~---~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~i~  239 (482)
                      ||+++.-      .++   +.+.   .....++.+++.+.+-+.+++|-.+|.|..+.-+    .+....-......+|+
T Consensus        96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen   96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT  175 (933)
T ss_pred             EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence            9998543      222   2221   1135678999999999999999999999988532    1111222223567899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q psy8448         240 DITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG  312 (482)
Q Consensus       240 ~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~  312 (482)
                      .+.+..++..++-+..-..|.+|.+....  ........++.+++|..+++.. ..++++ .+..+.+|+..+
T Consensus       176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t-~qfIca-~~e~l~fY~sd~  244 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGT-YQFICA-GSEFLYFYDSDG  244 (933)
T ss_pred             eeEEecCCceeEEEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCC-ccEEEe-cCceEEEEcCCC
Confidence            99999988873333334569999998444  2222233778889999998876 334433 345689999854

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.55  E-value=2.3e-05  Score=74.67  Aligned_cols=182  Identities=8%  Similarity=0.048  Sum_probs=114.2

Q ss_pred             EcCCCCEEEE-EeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCC
Q psy8448         108 FSPDGQYLIT-GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS----GKVKIWKIATG  182 (482)
Q Consensus       108 ~s~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~  182 (482)
                      ++|||+.+.. .-..+.+.+.|.++.+...++...         .....++++|+|+++++.+.+    .++...+..+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd---------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~  270 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD---------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER  270 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC---------CCcccceECCCCCEEEEeccCcccCcceeeeccccC
Confidence            3445554422 223456777777766655554443         345677899999999888643    23333333222


Q ss_pred             eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC-----CceEEEeeccccceeEEEEcCCCCEEEEEeC-C
Q psy8448         183 QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS-----GKMLKEFRGHSSFVNDITFTADGHSVLSASS-D  256 (482)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d  256 (482)
                      .....+..   ..+  .++.++|++...+  ++.|.+.|.++     .+.+..+. -......+.++|||+++++++. +
T Consensus       271 d~~vvfni---~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        271 DWVVVFNI---ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             ceEEEEch---HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC
Confidence            22222210   000  1334577776653  67899999988     34444444 4556789999999999887665 8


Q ss_pred             CcEEEEECCCCce------------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         257 GTVKMWNLKTTEC------------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       257 g~i~i~d~~~~~~------------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      .++.++|+.+.+.            .....   . ...-...+|.++| ..+.+-.-|..|..|++.
T Consensus       343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaeve---v-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPE---L-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             CcEEEEEChhhhhhhhccCCccceEEEeec---c-CCCcceEEECCCC-CEEEeEeecceeEEEehH
Confidence            9999999987553            22221   1 2233567888988 788888899999999984

>KOG0882|consensus

Probab=98.54  E-value=3.9e-07  Score=80.76  Aligned_cols=160  Identities=14%  Similarity=0.103  Sum_probs=109.7

Q ss_pred             cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC---CceEEEeeccccceeEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q psy8448         192 HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS---GKMLKEFRGHSSFVNDITFTADGHSVLSASS-DGTVKMWNLKTT  267 (482)
Q Consensus       192 ~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~~~  267 (482)
                      |...|+.+... ..+++++++.||.++.|--..   -+.+..+..|-+.|.+++.+.++.++.+.+. |..++++|+.+-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            66667766554 457899999999999997543   1345566788899999999999999999777 999999999876


Q ss_pred             ceeeeeeccCCCccceeEEEEcCCCC-CEEEE-EeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         268 ECTSTFKSLGASDIAVNSIHLLPKNT-EHFVV-CNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       268 ~~~~~~~~~~~~~~~v~~i~~~~~~~-~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      ..+..++.. .-...+ ++..++... ..+++ .-.++.+.++|-.+...........|..+|.++.+.+.+..+++...
T Consensus        87 DminmiKL~-~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   87 DMINMIKLV-DLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             chhhhcccc-cCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            554433311 111111 112222211 13333 34578899999854332222223334889999999999999999999


Q ss_pred             CcEEEEEee
Q psy8448         346 DMVLVVRLI  354 (482)
Q Consensus       346 dg~i~iw~~  354 (482)
                      .|.|.-|..
T Consensus       165 ~gmVEyWs~  173 (558)
T KOG0882|consen  165 SGMVEYWSA  173 (558)
T ss_pred             cceeEeecC
Confidence            999995544

>KOG1645|consensus

Probab=98.53  E-value=4.9e-06  Score=72.96  Aligned_cols=245  Identities=14%  Similarity=0.131  Sum_probs=138.6

Q ss_pred             eeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCC-CEEEEEeCC
Q psy8448          94 QIKFGSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS-EMLASGSQS  171 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~~~~~d  171 (482)
                      +++.+|...|..++|||..+ ++..++.+..|.|.|+++......+...         ..+.+++|.-+. ++|..|..+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---------~~~wSC~wDlde~h~IYaGl~n  257 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---------NQIWSCCWDLDERHVIYAGLQN  257 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---------CCceeeeeccCCcceeEEeccC
Confidence            36668899999999999766 7788899999999999998877666544         579999999855 567777789


Q ss_pred             CcEEEEEcCCCeEeE-Eeec-ccCCCeEEEEEcc------CCCEEEEEECCCeEEEEeCCCC----ceEEEeecccccee
Q psy8448         172 GKVKIWKIATGQCLR-KLEK-AHSLGVTCIQFSR------DNSQILTASFDTYVRIHGLKSG----KMLKEFRGHSSFVN  239 (482)
Q Consensus       172 g~i~iwd~~~~~~~~-~~~~-~~~~~v~~i~~~~------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~  239 (482)
                      |.|.|||++..+... .+.. -...+|..++.-+      .+..++.+..+  +..|++.-.    -++..+. ..+...
T Consensus       258 G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~ci  334 (463)
T KOG1645|consen  258 GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICI  334 (463)
T ss_pred             ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCccee
Confidence            999999998765322 1111 1223444444322      33444443322  445554321    1222222 345556


Q ss_pred             EEEEcCCCCEEEEEeCC-C------cEE-EEECCCCceeeeeecc--CCCc---cceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         240 DITFTADGHSVLSASSD-G------TVK-MWNLKTTECTSTFKSL--GASD---IAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       240 ~l~~~~~~~~l~~~~~d-g------~i~-i~d~~~~~~~~~~~~~--~~~~---~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                      ++.+.+-.+.++..... .      .+. --|.+.|.++..-+..  ....   ..-..+.-.++...++.++...+.+.
T Consensus       335 smqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~li  414 (463)
T KOG1645|consen  335 SMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELI  414 (463)
T ss_pred             eeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeE
Confidence            66666654555443322 0      011 1222333332221110  0000   00111222344423444566678999


Q ss_pred             EEEc-CCcEEEEecCCcccCcCEEEEEEcC-CCCEEEEEeCCcEEEEEee
Q psy8448         307 IMNM-QGQIVRSLSSGKREGGDFLCCTTSP-RGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       307 i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~-~g~~l~~~~~dg~i~iw~~  354 (482)
                      +||. ....+.++..    ..+|..++... +|.-+...=.|..++||.+
T Consensus       415 l~D~~s~evvQ~l~~----~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~  460 (463)
T KOG1645|consen  415 LQDPHSFEVVQTLAL----SEPVLDICPNDTNGSSYLALLTDDRVHIYKN  460 (463)
T ss_pred             Eeccchhheeeeccc----CcceeecceeecCCcchhhheecceEEEEec
Confidence            9999 6777777765    45666665443 3433334445667776543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.53  E-value=0.00012  Score=67.69  Aligned_cols=237  Identities=16%  Similarity=0.231  Sum_probs=135.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccc---------cccEEEEEEcCCCCEEEEEeC
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM---------EEAVMSLAYSRDSEMLASGSQ  170 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h---------~~~i~~l~~~~~~~~l~~~~~  170 (482)
                      ...+....|||+|+.+|... ++.|.+++..+++............+.|-         -+.-.++-||||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788899999999999886 67899999887754432221111101000         012357889999999987653


Q ss_pred             C-Cc-----------------------------------EEEEEcCCCeEeE-Eee---cccCCCeEEEEEccCCCEEEE
Q psy8448         171 S-GK-----------------------------------VKIWKIATGQCLR-KLE---KAHSLGVTCIQFSRDNSQILT  210 (482)
Q Consensus       171 d-g~-----------------------------------i~iwd~~~~~~~~-~~~---~~~~~~v~~i~~~~~~~~l~~  210 (482)
                      | ..                                   +.++|+.+++... ...   ......+..+.|.+++..|+.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            3 22                                   3334444443221 110   123345788999998884544


Q ss_pred             EECC--C---eEEEEeCCCCceEEEeec-cccc---eeEEEEc-CCCCEE-EEEeCCCc--EEEEECCCCceeeeeeccC
Q psy8448         211 ASFD--T---YVRIHGLKSGKMLKEFRG-HSSF---VNDITFT-ADGHSV-LSASSDGT--VKMWNLKTTECTSTFKSLG  277 (482)
Q Consensus       211 ~~~d--g---~i~i~d~~~~~~~~~~~~-~~~~---i~~l~~~-~~~~~l-~~~~~dg~--i~i~d~~~~~~~~~~~~~~  277 (482)
                      .-.+  .   .+.++|..+++....... ..+.   -....|. +++..+ .....+|.  |.+++...+... .+.   
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT---  276 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLT---  276 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS---
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccc---
Confidence            3322  2   577778877765433322 2222   2355554 555544 44556665  555566555432 332   


Q ss_pred             CCccceeE-EEEcCCCCCEEEEEeCCC----eEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448         278 ASDIAVNS-IHLLPKNTEHFVVCNKTN----TVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       278 ~~~~~v~~-i~~~~~~~~~l~~~~~d~----~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      .....|.. +.+.+++..+++++..++    .+...++. +..+..+.......   ..+.|+|+|++++..+
T Consensus       277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~---~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH---YSASFSPDGKYYVDTY  346 (353)
T ss_dssp             -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT---EEEEE-TTSSEEEEEE
T ss_pred             cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc---eEEEECCCCCEEEEEE
Confidence            44556644 677888767777777633    55555667 77888887653221   6899999999988543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.53  E-value=0.00017  Score=61.87  Aligned_cols=200  Identities=12%  Similarity=0.174  Sum_probs=115.2

Q ss_pred             CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          98 GSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      +-...+..++|+|+.+ ++++....+.|...+. +|+.+..+....       -+..-.+++..++.++++.-.++.+.+
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-------~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-------FGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--------SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-------CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            5556799999999755 5566677888888886 578877776654       256788899888877776667899999


Q ss_pred             EEcCCCe------EeEEee----cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC---CceEEEe--------eccc
Q psy8448         177 WKIATGQ------CLRKLE----KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS---GKMLKEF--------RGHS  235 (482)
Q Consensus       177 wd~~~~~------~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--------~~~~  235 (482)
                      +++....      ....+.    ..+...+-.++|+|.++.|+++-...-..+|.++.   ...+...        ....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence            9883321      112221    12456689999999888888887776666766653   2211111        1133


Q ss_pred             cceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeccCCC------ccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448         236 SFVNDITFTADG-HSVLSASSDGTVKMWNLKTTECTSTFKSLGAS------DIAVNSIHLLPKNTEHFVVCNKTNTVVIM  308 (482)
Q Consensus       236 ~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~d~~i~i~  308 (482)
                      ..+.+++++|.. ++++....+..|..+| .+|+.+..+....+.      -...-.|++.++| .++++ +.-+..++|
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIV-SEPNLFYRF  247 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEE-ETTTEEEEE
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEE-cCCceEEEe
Confidence            457899999965 4555666678888999 667766655533221      1346789999987 44444 455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.53  E-value=7.7e-05  Score=70.00  Aligned_cols=219  Identities=14%  Similarity=0.241  Sum_probs=121.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      .......+.++|+|++++.++ ||.-.|+.....+...             .+....++|.+.+ .+|+-...+.|.|+.
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-------------~G~g~~~vw~~~n-~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-------------FGSGLSFVWSSRN-RYAVLESSSTIKIYK   95 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEE-SEEEE-TSS-EEEEE-TTS-EEEEE
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-------------cCceeEEEEecCc-cEEEEECCCeEEEEE
Confidence            344578899999999999865 7888888743322111             2446678899855 477777788999974


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCc
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGT  258 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~  258 (482)
                      --+++....+..+  ..+..+-.   |..|+..+ ++.|.+||+.+++.+..+...  +|..+.|++++++++..+.+ .
T Consensus        96 n~~~~~~k~i~~~--~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~  166 (443)
T PF04053_consen   96 NFKNEVVKSIKLP--FSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-S  166 (443)
T ss_dssp             TTEE-TT-----S--S-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--S
T ss_pred             cCccccceEEcCC--cccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-e
Confidence            3233332344222  23444433   77777776 448999999999999988743  38999999999999888765 5


Q ss_pred             EEEEECCCC-----------ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc--EEEEecCCcccC
Q psy8448         259 VKMWNLKTT-----------ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ--IVRSLSSGKREG  325 (482)
Q Consensus       259 i~i~d~~~~-----------~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~  325 (482)
                      +.+++....           .....+.   .-...|.+..|..+   .|+-.+.. .++.+ +.|.  .+..+      .
T Consensus       167 i~il~~~~~~~~~~~~~g~e~~f~~~~---E~~~~IkSg~W~~d---~fiYtT~~-~lkYl-~~Ge~~~i~~l------d  232 (443)
T PF04053_consen  167 IYILKYNLEAVAAIPEEGVEDAFELIH---EISERIKSGCWVED---CFIYTTSN-HLKYL-VNGETGIIAHL------D  232 (443)
T ss_dssp             EEEEEE-HHHHHHBTTTB-GGGEEEEE---EE-S--SEEEEETT---EEEEE-TT-EEEEE-ETTEEEEEEE-------S
T ss_pred             EEEEEecchhcccccccCchhceEEEE---EecceeEEEEEEcC---EEEEEcCC-eEEEE-EcCCcceEEEc------C
Confidence            777775432           0222221   22567888888764   44444444 77762 2333  33333      3


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         326 GDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       326 ~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      .++.=+.+.++.+.++....|+.+..+.++
T Consensus       233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  233 KPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            456677888888899999999999988765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2066|consensus

Probab=98.53  E-value=7.1e-06  Score=78.38  Aligned_cols=141  Identities=18%  Similarity=0.234  Sum_probs=103.8

Q ss_pred             cCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC-----CCEEEEEeCCCcEEEEEcC--C
Q psy8448         109 SPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-----SEMLASGSQSGKVKIWKIA--T  181 (482)
Q Consensus       109 s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-----~~~l~~~~~dg~i~iwd~~--~  181 (482)
                      ..+|.++++|+.||+|.|-.+-+.+....+.++         .++.+++++|+     .+.+++|+..| +.++.-.  .
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~---------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg  149 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG  149 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEecC---------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence            457999999999999999999988877766655         68999999997     56899999888 7666421  1


Q ss_pred             CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccc------eeEEEEcCCCCEEEEEeC
Q psy8448         182 GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSF------VNDITFTADGHSVLSASS  255 (482)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------i~~l~~~~~~~~l~~~~~  255 (482)
                      .+....+ ....++|.++.|.  |.+||-++.+| |++||+.+.+.+..+......      ...+.|.++.+ |+.|-.
T Consensus       150 nk~~v~l-~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~  224 (846)
T KOG2066|consen  150 NKDSVVL-SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWG  224 (846)
T ss_pred             Cccceee-ecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecC
Confidence            1111123 4567899999995  77888888665 999999988877766543332      34677876544 665654


Q ss_pred             CCcEEEEECC
Q psy8448         256 DGTVKMWNLK  265 (482)
Q Consensus       256 dg~i~i~d~~  265 (482)
                      | +|+|..++
T Consensus       225 d-~v~i~~I~  233 (846)
T KOG2066|consen  225 D-SVKICSIK  233 (846)
T ss_pred             C-eEEEEEEe
Confidence            4 58888877

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.53  E-value=8.3e-05  Score=68.84  Aligned_cols=245  Identities=17%  Similarity=0.211  Sum_probs=134.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceee------ccc-------------------cc----------ccccc
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRK------DLK-------------------YQ----------AQDNF  146 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~------~~~-------------------~~----------~~~~~  146 (482)
                      .|+.+.|.++..-|+.|...|.|.||.....+...      ...                   ..          +..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58999999998899999999999999765433221      000                   00          00011


Q ss_pred             ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec-------ccCCCeEEEEEcc-----CC---CEEEEE
Q psy8448         147 MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK-------AHSLGVTCIQFSR-----DN---SQILTA  211 (482)
Q Consensus       147 ~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~i~~~~-----~~---~~l~~~  211 (482)
                      ....++|++++.+.= -+++.|..+|.+.|.|++....+..-..       .....++++.|..     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            123689999999844 4899999999999999998887765321       1234688888863     22   468899


Q ss_pred             ECCCeEEEEeCCC---CceE----EEeeccccceeEEE-EcCC--------------------CCEEEEEeCCCcEEEEE
Q psy8448         212 SFDTYVRIHGLKS---GKML----KEFRGHSSFVNDIT-FTAD--------------------GHSVLSASSDGTVKMWN  263 (482)
Q Consensus       212 ~~dg~i~i~d~~~---~~~~----~~~~~~~~~i~~l~-~~~~--------------------~~~l~~~~~dg~i~i~d  263 (482)
                      +..|.+.+|.+--   +...    .....+.++|..+. ++.+                    -+.+++...+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999998741   1111    11223556666555 3221                    12244455567799999


Q ss_pred             CCCCceeeeeeccCCCccceeEEEEcC----CCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcc-cCcCEEEEEEcCCC
Q psy8448         264 LKTTECTSTFKSLGASDIAVNSIHLLP----KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR-EGGDFLCCTTSPRG  337 (482)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~-~~~~v~~~~~~~~g  337 (482)
                      ..+.+......   ........+.+.+    .+...|++-..+|.+++|.+ .-+.+..+.-... ....+...+++++|
T Consensus       242 ~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  242 PPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             CCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence            98877655443   2222333344421    22367888889999999999 5566655554211 12233456778899


Q ss_pred             CEEEEEeCCcEEE
Q psy8448         338 EWIYCVGEDMVLV  350 (482)
Q Consensus       338 ~~l~~~~~dg~i~  350 (482)
                      +.++-.+.....+
T Consensus       319 di~~~~gpsE~~l  331 (395)
T PF08596_consen  319 DIFYWTGPSEIQL  331 (395)
T ss_dssp             -EEEE-SSSEEEE
T ss_pred             CEEEEeCcccEEE
Confidence            8877666554433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.48  E-value=2.1e-05  Score=73.54  Aligned_cols=187  Identities=20%  Similarity=0.177  Sum_probs=119.4

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEe---CC-CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCC
Q psy8448          98 GSKSHVECARFSPDGQYLITGS---VD-GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSG  172 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~---~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg  172 (482)
                      .-...+..-+|+|+++.++...   .. ..+.++++++++........         ..-...+|+|||++|+.+. .||
T Consensus       190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---------g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---------GNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---------CccCCccCCCCCCEEEEEECCCC
Confidence            3455677888999998876543   22 46999999998866555533         3345668999999888765 455


Q ss_pred             --cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC---eEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448         173 --KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT---YVRIHGLKSGKMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       173 --~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                        .|.++|+..+.. ..+. ...+.-..-.|+|+|+.|+..+..+   .|.+++++.... ..+....+.-..-.|+|||
T Consensus       261 ~~~iy~~dl~~~~~-~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG  337 (425)
T COG0823         261 SPDIYLMDLDGKNL-PRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDG  337 (425)
T ss_pred             CccEEEEcCCCCcc-eecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCC
Confidence              466667776663 3342 2233334678999999988766433   588888876655 3333233333377899999


Q ss_pred             CEEEEEeCC-Cc--EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448         248 HSVLSASSD-GT--VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       248 ~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      ++|+..+.. |.  |.+.|+.++...+.+    ..........|.+++..++...+
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~~~~~~~l----t~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLASGGKIRIL----TSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCCCCcEEEc----cccccCCCCCcCCCCceEEEecc
Confidence            999877643 44  677777666543333    23334445667777744444433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.43  E-value=2.7e-05  Score=72.36  Aligned_cols=115  Identities=13%  Similarity=0.203  Sum_probs=83.9

Q ss_pred             ccEEEEEEcC-CCCEEEEE----eCCCc----EEEEEcCCCeE--eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448         151 EAVMSLAYSR-DSEMLASG----SQSGK----VKIWKIATGQC--LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI  219 (482)
Q Consensus       151 ~~i~~l~~~~-~~~~l~~~----~~dg~----i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i  219 (482)
                      ....++.|+. +...+.+.    +.+|.    -.+|++..++.  +..........+.+++++|+.+.++.|+.||.|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            4456777776 44445543    23443    34566655432  22333467788999999999999999999999999


Q ss_pred             EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy8448         220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT  267 (482)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~  267 (482)
                      ||...+...  +....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            998766433  2234556789999999999999999999999998654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.40  E-value=0.00046  Score=66.85  Aligned_cols=204  Identities=14%  Similarity=0.167  Sum_probs=121.8

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE--EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM--SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE  189 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~--~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  189 (482)
                      +..++.++.++.|.-.|..+|+.+-..........  ....+.  .+... ++..++.++.++.|..+|.++++.+.++.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~--~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADR--GCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccc--cccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence            44566777789999999999987765544321000  000010  11111 22578888899999999999999988874


Q ss_pred             cccCC-CeEEEEEcc--CCCEEEEEE---------CCCeEEEEeCCCCceEEEeeccccc--------------------
Q psy8448         190 KAHSL-GVTCIQFSR--DNSQILTAS---------FDTYVRIHGLKSGKMLKEFRGHSSF--------------------  237 (482)
Q Consensus       190 ~~~~~-~v~~i~~~~--~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~--------------------  237 (482)
                      ..... .-..+.-+|  .+..++.++         .++.+..+|..+++.+..+......                    
T Consensus       138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            32210 000111111  224555554         3678999999999988776532110                    


Q ss_pred             e-eEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeeeeeccCCCcc----ceeEEEEc----C
Q psy8448         238 V-NDITFTADGHSVLSASSDG------------------TVKMWNLKTTECTSTFKSLGASDI----AVNSIHLL----P  290 (482)
Q Consensus       238 i-~~l~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~~----~v~~i~~~----~  290 (482)
                      + ....+++.+..++.++.++                  .|.-+|.++++..-.++.. .+..    ......+.    -
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEEecccc
Confidence            1 1234455567788787665                  6999999999988776531 1110    00000111    1


Q ss_pred             CC--CCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448         291 KN--TEHFVVCNKTNTVVIMNM-QGQIVRSLS  319 (482)
Q Consensus       291 ~~--~~~l~~~~~d~~i~i~d~-~~~~~~~~~  319 (482)
                      ++  ...+++++.+|.+...|. +|+.+-...
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            22  136778889999999999 687776654

The alignment model contains an 8-bladed beta-propeller.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.39  E-value=0.00086  Score=60.48  Aligned_cols=224  Identities=14%  Similarity=0.151  Sum_probs=114.6

Q ss_pred             EEcCCCCEEEEEeC-C--CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe
Q psy8448         107 RFSPDGQYLITGSV-D--GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ  183 (482)
Q Consensus       107 ~~s~~~~~l~s~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  183 (482)
                      +|.+||+.|+.++. |  ..+.+.|+.+++..+......        .......++|+.+.++.......+.-.|+.+.+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--------~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e  113 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--------DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE  113 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---------B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--------CCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence            57888977766553 4  468888999988766554332        112245677888888777666789999999887


Q ss_pred             EeEEeecccCCCeEEEEEc--cCCCEEEEEEC----------------------CCeEEEEeCCCCceEEEeecccccee
Q psy8448         184 CLRKLEKAHSLGVTCIQFS--RDNSQILTASF----------------------DTYVRIHGLKSGKMLKEFRGHSSFVN  239 (482)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~----------------------dg~i~i~d~~~~~~~~~~~~~~~~i~  239 (482)
                      ....+ .....-+-...|.  .++..++-.-.                      ...|.-.|+++++....+. ....+.
T Consensus       114 ~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlg  191 (386)
T PF14583_consen  114 ERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLG  191 (386)
T ss_dssp             EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EE
T ss_pred             EEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCcccc
Confidence            65555 2334444445553  35555443211                      1356677888887655554 566788


Q ss_pred             EEEEcCCCCEEEEEeCCC-----cEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEe-C---CCeEEEEE
Q psy8448         240 DITFTADGHSVLSASSDG-----TVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN-K---TNTVVIMN  309 (482)
Q Consensus       240 ~l~~~~~~~~l~~~~~dg-----~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~---d~~i~i~d  309 (482)
                      .+.|+|....+++=+.+|     .-+||-+++ +.....+... .....+..=-|.|+|..+...+. .   +..|.-+|
T Consensus       192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d  270 (386)
T PF14583_consen  192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYD  270 (386)
T ss_dssp             EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-
T ss_pred             CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEeeC
Confidence            999999766666655433     135565543 2333333322 23455666779999976666544 2   23455566


Q ss_pred             c-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         310 M-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       310 ~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      . +++.. .+..    ......+--++||++++-=+.|
T Consensus       271 ~~t~~~~-~~~~----~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  271 PDTGERR-RLME----MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             TTT--EE-EEEE----E-SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCCCce-EEEe----CCceeeeEEcCCCCEEEecCCC
Confidence            6 33332 2211    1234567778999988764544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=0.0015  Score=60.99  Aligned_cols=238  Identities=15%  Similarity=0.175  Sum_probs=152.1

Q ss_pred             cEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCcEEEEEc
Q psy8448         102 HVECARFSPDGQYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGKVKIWKI  179 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~  179 (482)
                      ....+...+++..+.... ....+...+.............        ......++.++.+..+.. ...+..|.+.|.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g--------~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~  103 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVG--------GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDT  103 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCC--------CccccceeeCCCCCeEEEecCCCCeEEEEcC
Confidence            455677888875444332 2234555544422211111111        023457788888775544 445689999998


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC---CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-C
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF---DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-S  255 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~  255 (482)
                      .+.+.......+.  ....++++|+++.+.++..   ++.+.+.|..+++...+...-..+ ..++++|+|..++... .
T Consensus       104 ~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~  180 (381)
T COG3391         104 ATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSD  180 (381)
T ss_pred             cccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecC
Confidence            8877777664333  6778999999988877765   689999999999888775533334 8999999999776665 7


Q ss_pred             CCcEEEEECCCCceee-eeeccCCCccceeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCcEEEEecCCcccCcCEEEEE
Q psy8448         256 DGTVKMWNLKTTECTS-TFKSLGASDIAVNSIHLLPKNTEHFVVCNKT--NTVVIMNMQGQIVRSLSSGKREGGDFLCCT  332 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  332 (482)
                      ++.|.+.|........ .-.........-..+.+.|++...+++...+  +.+...|.....+.......... ....+.
T Consensus       181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~  259 (381)
T COG3391         181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVA  259 (381)
T ss_pred             CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCcee
Confidence            8899999977665443 1000012233446789999995555555544  68888888543333331111112 456789


Q ss_pred             EcCCCCEEEEEeCC-cEEEE
Q psy8448         333 TSPRGEWIYCVGED-MVLVV  351 (482)
Q Consensus       333 ~~~~g~~l~~~~~d-g~i~i  351 (482)
                      .+|+|.++.+.... +.+.+
T Consensus       260 ~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         260 VDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             ECCCCCEEEEEecCCCeEEE
Confidence            99999999987544 66763

>KOG3621|consensus

Probab=98.38  E-value=1.4e-05  Score=75.38  Aligned_cols=159  Identities=18%  Similarity=0.262  Sum_probs=110.1

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      -|...|.--+++..+++++.|+.-|.+++|+-..++.... +...      -...+.....+++..++|+|+..|.|.++
T Consensus        31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~~~~------~~~~~~~~~vs~~e~lvAagt~~g~V~v~  103 (726)
T KOG3621|consen   31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-KNEG------ATGITCVRSVSSVEYLVAAGTASGRVSVF  103 (726)
T ss_pred             cCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-cccC------ccceEEEEEecchhHhhhhhcCCceEEee
Confidence            3455666667777899999999999999999766654332 2211      13567778889988899999999999999


Q ss_pred             EcCCCeE-----eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC----ceEEEeeccccceeEEEEcCCCC
Q psy8448         178 KIATGQC-----LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG----KMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       178 d~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      -+..+..     .......|...|++++|++++..+++|...|.|..-.+...    ...+.+....+.|..+... ++.
T Consensus       104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~  182 (726)
T KOG3621|consen  104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSY  182 (726)
T ss_pred             hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cce
Confidence            8866432     22233457788999999999999999999999999888762    1223333456677666665 334


Q ss_pred             EEEEEeCCCcEEEEECCC
Q psy8448         249 SVLSASSDGTVKMWNLKT  266 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~  266 (482)
                      +|++... . -.+++++.
T Consensus       183 LLVStl~-r-~~Lc~tE~  198 (726)
T KOG3621|consen  183 LLVSTLT-R-CILCQTEA  198 (726)
T ss_pred             ehHhhhh-h-hheeecch
Confidence            4443332 2 34455554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.36  E-value=0.0012  Score=58.50  Aligned_cols=252  Identities=15%  Similarity=0.190  Sum_probs=148.5

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe--CCC
Q psy8448         105 CARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS--QSG  172 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~--~dg  172 (482)
                      .+..+|+++.+++++          ..-.|.+||..+-.....+..+....... -.....+.++.++++++...  -..
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~-~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV-VPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B-S--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee-cccccceEEccCCcEEEEEccCCCC
Confidence            356899999998753          34479999999988777666654311110 01233457888999888764  446


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC-CCceEEEee----ccccce-eEEEEcCC
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK-SGKMLKEFR----GHSSFV-NDITFTAD  246 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~----~~~~~i-~~l~~~~~  246 (482)
                      .|.|.|+..++.+..+..+   .+..+--.+ ...+.+-|.||.+.-..+. .|+...+..    ....++ ..-++...
T Consensus       119 SVtVVDl~~~kvv~ei~~P---GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTP---GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGT---SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             eEEEEECCCCceeeeecCC---CEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            8999999999998877422   222222222 3457788889999988887 555543221    112222 23344445


Q ss_pred             CCEEEEEeCCCcEEEEECCCCcee--eeeeccCC-------CccceeEEEEcCCCCCEEEEEe-------CCC--eEEEE
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECT--STFKSLGA-------SDIAVNSIHLLPKNTEHFVVCN-------KTN--TVVIM  308 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~-------~d~--~i~i~  308 (482)
                      +..++-.+.+|.|+-.|+......  ..+.....       ..+...-+++++..+.+++.-.       .++  .|-++
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            556666888999999888765432  22221110       0122334667766534444321       122  35666


Q ss_pred             Ec-CCcEEEEecCCcccCcCEEEEEEcCCCC-EEEEE-eCCcEEEEEeehhhhhhhcccccceeeeecccceeecccc
Q psy8448         309 NM-QGQIVRSLSSGKREGGDFLCCTTSPRGE-WIYCV-GEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDS  383 (482)
Q Consensus       309 d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (482)
                      |+ +++.+.++..    ..++.+++.+.+.+ +|++. ..++.+.                  ++|..+|+.++.+..
T Consensus       275 D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~------------------v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  275 DLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLD------------------VYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEE------------------EEETTT--EEEEE--
T ss_pred             ECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEE------------------EEeCcCCcEEeehhc
Confidence            76 6778887775    34567899988765 66554 4578999                  788888877776654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.36  E-value=0.00039  Score=67.36  Aligned_cols=222  Identities=13%  Similarity=0.161  Sum_probs=131.0

Q ss_pred             CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEe---------CCCcEEEEEcCC
Q psy8448         113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGS---------QSGKVKIWKIAT  181 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~---------~dg~i~iwd~~~  181 (482)
                      ..++.++.+|.|+-+|.++|+.+-.........      .-..+.-+|  .+..++.++         .+|.+..+|..+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T  184 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET  184 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcC------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC
Confidence            577778889999999999999886665442100      000011111  123455543         367899999999


Q ss_pred             CeEeEEeecccCCC-------------------e-EEEEEccCCCEEEEEECCC------------------eEEEEeCC
Q psy8448         182 GQCLRKLEKAHSLG-------------------V-TCIQFSRDNSQILTASFDT------------------YVRIHGLK  223 (482)
Q Consensus       182 ~~~~~~~~~~~~~~-------------------v-~~i~~~~~~~~l~~~~~dg------------------~i~i~d~~  223 (482)
                      ++.+..+.......                   + ...++.+.+..++.++.++                  .|.-+|++
T Consensus       185 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~  264 (488)
T cd00216         185 GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD  264 (488)
T ss_pred             CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence            99888774322110                   1 1244555566788887665                  79999999


Q ss_pred             CCceEEEeecccccee------EEEEc----CCCC---EEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC
Q psy8448         224 SGKMLKEFRGHSSFVN------DITFT----ADGH---SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP  290 (482)
Q Consensus       224 ~~~~~~~~~~~~~~i~------~l~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~  290 (482)
                      +++.+..+..-.....      ...+.    -++.   .++.++.+|.+...|.++|+.+-.....      ...++..|
T Consensus       265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~  338 (488)
T cd00216         265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP  338 (488)
T ss_pred             CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC
Confidence            9999887652111110      00111    1233   5778888999999999999987765421      11223333


Q ss_pred             CCCCEEEE-----------------EeCCCeEEEEEc-CCcEEEEecCCccc-C----cCE--EEEEEcCCCCEEEEEeC
Q psy8448         291 KNTEHFVV-----------------CNKTNTVVIMNM-QGQIVRSLSSGKRE-G----GDF--LCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       291 ~~~~~l~~-----------------~~~d~~i~i~d~-~~~~~~~~~~~~~~-~----~~v--~~~~~~~~g~~l~~~~~  345 (482)
                       + .+++.                 ...+|.+.-.|. +|+.+-........ .    .+.  ..++.  .+..|++++.
T Consensus       339 -~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~  414 (488)
T cd00216         339 -G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAA  414 (488)
T ss_pred             -c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECC
Confidence             1 22221                 123567888887 67766655533100 0    111  11222  4678999999


Q ss_pred             CcEEE
Q psy8448         346 DMVLV  350 (482)
Q Consensus       346 dg~i~  350 (482)
                      ||.++
T Consensus       415 dG~l~  419 (488)
T cd00216         415 DGYFR  419 (488)
T ss_pred             CCeEE
Confidence            99999

The alignment model contains an 8-bladed beta-propeller.

>KOG1008|consensus

Probab=98.34  E-value=3.9e-07  Score=84.45  Aligned_cols=200  Identities=14%  Similarity=0.186  Sum_probs=131.9

Q ss_pred             ccEEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCeEe-EEeecccCCCeEEEEEcc-CCCEEEEEE----CCCeEEEEeC
Q psy8448         151 EAVMSLAYSRDS--EMLASGSQSGKVKIWKIATGQCL-RKLEKAHSLGVTCIQFSR-DNSQILTAS----FDTYVRIHGL  222 (482)
Q Consensus       151 ~~i~~l~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~i~~~~-~~~~l~~~~----~dg~i~i~d~  222 (482)
                      ..+.|+++.-+.  ..+++|..+|.|.+-.++...-. ..+..++..++++++|++ |...||+|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            346677766533  46788889999999988765443 555577888999999998 556666663    3457999999


Q ss_pred             CCC--ceE--EEeec-cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEE
Q psy8448         223 KSG--KML--KEFRG-HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHF  296 (482)
Q Consensus       223 ~~~--~~~--~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l  296 (482)
                      .++  .+.  ..+.+ ......+++|..+.+++++|.....+.++|++... ....     .....+..+...|-...++
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-----vnTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-----VNTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-----hhhhhcccceecCCCCCce
Confidence            876  221  12222 33445689999888999999999999999998432 1122     2234567788888554666


Q ss_pred             EEEeCCCeEEEEEc-C--CcEEEEecCC-cccCcCEEEEEEcCCCC--EEEEEeCCcEEEEEeehh
Q psy8448         297 VVCNKTNTVVIMNM-Q--GQIVRSLSSG-KREGGDFLCCTTSPRGE--WIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       297 ~~~~~d~~i~i~d~-~--~~~~~~~~~~-~~~~~~v~~~~~~~~g~--~l~~~~~dg~i~iw~~~~  356 (482)
                      ++.. |+.|.+||. .  .+++..+... ......+..++|+|...  ..+..-..+.|+.+++..
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            5554 999999994 2  2222222211 11123588999999643  333444567888887763

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.34  E-value=5.8e-06  Score=76.65  Aligned_cols=86  Identities=24%  Similarity=0.332  Sum_probs=68.1

Q ss_pred             eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      ..+.......|.|++++|+.+.|+.|+.||.|.+||...+..... ..         .-.++.++|+|+|..+++|+..|
T Consensus       252 svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka---------~~~P~~iaWHp~gai~~V~s~qG  321 (545)
T PF11768_consen  252 SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA---------EFIPTLIAWHPDGAIFVVGSEQG  321 (545)
T ss_pred             EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee---------cccceEEEEcCCCcEEEEEcCCc
Confidence            344447788999999999999999999999999999876643221 11         23578999999999999999999


Q ss_pred             cEEEEEcCCCeEeEEe
Q psy8448         173 KVKIWKIATGQCLRKL  188 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~  188 (482)
                      .+.+||+.-+.....+
T Consensus       322 elQ~FD~ALspi~~qL  337 (545)
T PF11768_consen  322 ELQCFDMALSPIKMQL  337 (545)
T ss_pred             eEEEEEeecCccceee
Confidence            9999998655443333

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.33  E-value=0.00092  Score=59.71  Aligned_cols=231  Identities=17%  Similarity=0.227  Sum_probs=132.4

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe--
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL--  188 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--  188 (482)
                      .++.|+.|+.+| +.+++............         ...|..+...|+-+.|++-+ |+.+.++++..-......  
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~---------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK---------LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee---------cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence            578899999999 99999832222211111         23499999999877666654 599999998654333210  


Q ss_pred             -----------ecccCCCeEEEE--EccCC-CEEEEEECCCeEEEEeCCCC-----ceEEEeeccccceeEEEEcCCCCE
Q psy8448         189 -----------EKAHSLGVTCIQ--FSRDN-SQILTASFDTYVRIHGLKSG-----KMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       189 -----------~~~~~~~v~~i~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                                 .......+...+  -...+ ..|+++. ...|.+|.....     +..+++. -...+.+++|.  ++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~  150 (275)
T PF00780_consen   75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNK  150 (275)
T ss_pred             ccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCE
Confidence                       112233444444  11233 3444444 568888887653     3455555 45778899998  566


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeccCC---------CccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecC
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKSLGA---------SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSS  320 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  320 (482)
                      ++.|..++ ..+.|+.++.....+.....         ...++..+... ++ .++++  .+..-.+.|..|+..+.  .
T Consensus       151 i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-e~Ll~--~~~~g~fv~~~G~~~r~--~  223 (275)
T PF00780_consen  151 ICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN-EFLLC--YDNIGVFVNKNGEPSRK--S  223 (275)
T ss_pred             EEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cc-eEEEE--ecceEEEEcCCCCcCcc--c
Confidence            77777554 88999997765443321111         11233333333 33 44443  24455566667765441  1


Q ss_pred             CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccccc
Q psy8448         321 GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSV  384 (482)
Q Consensus       321 ~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (482)
                      .-.-...+.++++.  ..+|++.+.++ |.                  ++++.++..+.++..+
T Consensus       224 ~i~W~~~p~~~~~~--~pyli~~~~~~-iE------------------V~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  224 TIQWSSAPQSVAYS--SPYLIAFSSNS-IE------------------VRSLETGELVQTIPLP  266 (275)
T ss_pred             EEEcCCchhEEEEE--CCEEEEECCCE-EE------------------EEECcCCcEEEEEECC
Confidence            11113345566663  45887766644 88                  6667777666665543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1645|consensus

Probab=98.32  E-value=0.00021  Score=63.08  Aligned_cols=151  Identities=14%  Similarity=0.109  Sum_probs=96.6

Q ss_pred             ccccccccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeC
Q psy8448         145 NFMLMEEAVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGL  222 (482)
Q Consensus       145 ~~~~h~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~  222 (482)
                      -+.+|...|..++|+|..+ ++..++.+..|+|.|+++......+. .+ ..+.+++|.-+. .+|..|..+|.|.+||+
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            4445678899999999776 78889999999999999998888873 44 789999998865 56778888999999999


Q ss_pred             CCCce-EEEeec--cccceeEEEEc------CCCCEEEEEeCCCcEEEEECCCCc--eeeeeeccCCCccceeEEEEcCC
Q psy8448         223 KSGKM-LKEFRG--HSSFVNDITFT------ADGHSVLSASSDGTVKMWNLKTTE--CTSTFKSLGASDIAVNSIHLLPK  291 (482)
Q Consensus       223 ~~~~~-~~~~~~--~~~~i~~l~~~------~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~i~~~~~  291 (482)
                      +..+- +..+.+  ...+|..++.-      +.+.+|+....  .+..|++....  .....+.  ...+...++.+.+.
T Consensus       266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlel--e~pG~cismqy~~~  341 (463)
T KOG1645|consen  266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLEL--EPPGICISMQYHGV  341 (463)
T ss_pred             cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCccccc--CCCcceeeeeecCc
Confidence            97653 222222  22344443332      23443443333  24556554321  1111111  33556667777776


Q ss_pred             CCCEEEEEeC
Q psy8448         292 NTEHFVVCNK  301 (482)
Q Consensus       292 ~~~~l~~~~~  301 (482)
                      ...++++.-.
T Consensus       342 snh~l~tyRs  351 (463)
T KOG1645|consen  342 SNHLLLTYRS  351 (463)
T ss_pred             cceEEEEecC
Confidence            6455555444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=0.00082  Score=62.76  Aligned_cols=221  Identities=16%  Similarity=0.219  Sum_probs=151.1

Q ss_pred             EEEEEEcCCCCE-EEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---CCcEEEEE
Q psy8448         103 VECARFSPDGQY-LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---SGKVKIWK  178 (482)
Q Consensus       103 v~~~~~s~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd  178 (482)
                      -..+++++.++. .++...++.|.+.|..+.+........         .....++++|+++.+..+..   ++.+.+.|
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG---------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid  146 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG---------LGPVGLAVDPDGKYVYVANAGNGNNTVSVID  146 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec---------cCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence            456788888774 455555689999998777766655443         25678999999987777655   68999999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEE-E---eeccccceeEEEEcCCCCEEEEE
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLK-E---FRGHSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~---~~~~~~~i~~l~~~~~~~~l~~~  253 (482)
                      -.+++...... ....+ ..+++.|+|..++++. .++.|.+.|........ .   ...-......+.++|++..+.+.
T Consensus       147 ~~t~~~~~~~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         147 AATNKVTATIP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             CCCCeEEEEEe-cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence            99888888753 33334 8899999999776665 78899999976665543 1   11123345678999999977665


Q ss_pred             eCC---CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448         254 SSD---GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       254 ~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~  329 (482)
                      ...   +.+...|..++.....-... ... ....+...|++....+.-+..+.+.+.|. +................+.
T Consensus       225 ~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~  302 (381)
T COG3391         225 NDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPV  302 (381)
T ss_pred             eccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccce
Confidence            544   58999999988766552211 222 45678999999544444456688999988 4555555554433334455


Q ss_pred             EEEEcCC
Q psy8448         330 CCTTSPR  336 (482)
Q Consensus       330 ~~~~~~~  336 (482)
                      .+++.+.
T Consensus       303 ~~~~~~~  309 (381)
T COG3391         303 SIAISPL  309 (381)
T ss_pred             eccceee
Confidence            5655544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.28  E-value=0.0023  Score=60.95  Aligned_cols=223  Identities=15%  Similarity=0.166  Sum_probs=126.7

Q ss_pred             cEEEEEEcCCCCEEEEE-eCC----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC----
Q psy8448         102 HVECARFSPDGQYLITG-SVD----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG----  172 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~-~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg----  172 (482)
                      .+...++||+|++||.+ +..    ..++++|+.+++.+......         .....+.|.++++.|+....+.    
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---------~~~~~~~W~~d~~~~~y~~~~~~~~~  195 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---------PKFSSVSWSDDGKGFFYTRFDEDQRT  195 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---------EESEEEEECTTSSEEEEEECSTTTSS
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---------cccceEEEeCCCCEEEEEEeCccccc
Confidence            44468899999999865 333    36999999999765432111         1123499999988877765433    


Q ss_pred             -------cEEEEEcCCCeEe--EEeecccCCC-eEEEEEccCCCEEEEEECC----CeEEEEeCCCC----ceEEEeecc
Q psy8448         173 -------KVKIWKIATGQCL--RKLEKAHSLG-VTCIQFSRDNSQILTASFD----TYVRIHGLKSG----KMLKEFRGH  234 (482)
Q Consensus       173 -------~i~iwd~~~~~~~--~~~~~~~~~~-v~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~----~~~~~~~~~  234 (482)
                             .|+.|.+.+...-  ..+....... ...+..++++++|+.....    ..+.+.|+..+    .....+...
T Consensus       196 ~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~  275 (414)
T PF02897_consen  196 SDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR  275 (414)
T ss_dssp             -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred             ccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence                   3778887665432  3332223333 6788899999998754332    35888898775    233333333


Q ss_pred             cccee-EEEEcCCCCEEEEEe---CCCcEEEEECCCCce---eeeeeccCCCc--cceeEEEEcCCCCCEEEEEeCCC--
Q psy8448         235 SSFVN-DITFTADGHSVLSAS---SDGTVKMWNLKTTEC---TSTFKSLGASD--IAVNSIHLLPKNTEHFVVCNKTN--  303 (482)
Q Consensus       235 ~~~i~-~l~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~~~d~--  303 (482)
                      ...+. .+... .+.+++...   ..+.|...++.....   ...+.   .+.  ..+..+....+  .+++....++  
T Consensus       276 ~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~--~Lvl~~~~~~~~  349 (414)
T PF02897_consen  276 EDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKD--YLVLSYRENGSS  349 (414)
T ss_dssp             SSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETT--EEEEEEEETTEE
T ss_pred             CCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECC--EEEEEEEECCcc
Confidence            33333 33333 444444332   246677788887653   21222   333  35566655433  4555555554  


Q ss_pred             eEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEE
Q psy8448         304 TVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIY  341 (482)
Q Consensus       304 ~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~  341 (482)
                      .|+++++. +.....+....  .+.+..+...++++.+.
T Consensus       350 ~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~  386 (414)
T PF02897_consen  350 RLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELR  386 (414)
T ss_dssp             EEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEE
T ss_pred             EEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEE
Confidence            57888887 77777666543  44456666556655444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.24  E-value=0.00014  Score=68.31  Aligned_cols=175  Identities=13%  Similarity=0.062  Sum_probs=95.7

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      .-.+..+.++|+|+.++++ .||...++.....+...      .+.....+|.+.+ .+|+-...+.|.++.--+.+...
T Consensus        32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc------cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccce
Confidence            3457899999999988884 57788888744333222      1234567888855 57777768889996322222222


Q ss_pred             EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         230 EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       230 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                      .+.. ...+..|-.   |..|...+.+ .|.+||+.+++.+..+.   .  .+|..+.|++++ .+++..+.+ .+.+++
T Consensus       104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~---v--~~vk~V~Ws~~g-~~val~t~~-~i~il~  171 (443)
T PF04053_consen  104 SIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID---V--SAVKYVIWSDDG-ELVALVTKD-SIYILK  171 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES---S---E-EEEEE-TTS-SEEEEE-S--SEEEEE
T ss_pred             EEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe---c--CCCcEEEEECCC-CEEEEEeCC-eEEEEE
Confidence            3332 122333332   7777766654 79999999999998885   2  248999999998 777777655 677877


Q ss_pred             cCCc------------EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         310 MQGQ------------IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       310 ~~~~------------~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      .+..            .+..+...   ...|.+.+|..+  .++-.+.. .++
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~-~lk  218 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSN-HLK  218 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEE
T ss_pred             ecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCC-eEE
Confidence            7544            33333321   356778888766  33333333 555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.22  E-value=0.00011  Score=68.87  Aligned_cols=163  Identities=15%  Similarity=0.157  Sum_probs=103.9

Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEE---ECC-CeEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA---SFD-TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~~d-g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      .+.+-|.. +.....+ ......+..-+|+|+++.++..   ... ..+.++|+.+++...... ..+.-..-+|+|||+
T Consensus       174 ~l~~~D~d-g~~~~~l-~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~  250 (425)
T COG0823         174 ELALGDYD-GYNQQKL-TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS  250 (425)
T ss_pred             eEEEEccC-CcceeEe-cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence            44444543 4444554 3445567778899998876644   222 469999999887655444 233344578999999


Q ss_pred             EEEEEe-CCCc--EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeE--EEEEcCCcEEEEecCCcc
Q psy8448         249 SVLSAS-SDGT--VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTV--VIMNMQGQIVRSLSSGKR  323 (482)
Q Consensus       249 ~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i--~i~d~~~~~~~~~~~~~~  323 (482)
                      .|+... .||.  |.++|+..+...+ +.   .....-..-.|+|+|..++++.+..|.-  .+++.++.....+.... 
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt---~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~-  325 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LT---NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG-  325 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCCccee-cc---cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC-
Confidence            887554 4554  7777887776333 33   2223333778999997777777777764  45555666555554432 


Q ss_pred             cCcCEEEEEEcCCCCEEEEEeC
Q psy8448         324 EGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       324 ~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                        ..-..-.|+|||++|+..+.
T Consensus       326 --~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         326 --GGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             --CCCcCccCCCCCCEEEEEec
Confidence              11227789999999997664

>KOG2114|consensus

Probab=98.20  E-value=0.00033  Score=68.01  Aligned_cols=204  Identities=13%  Similarity=0.135  Sum_probs=124.9

Q ss_pred             CCCCceeeccCCccccccccccccccccceeeecCCCCc-EEEEEEcCCCCEEEEEeCCC-----eEEEEecCCCceee-
Q psy8448          64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSH-VECARFSPDGQYLITGSVDG-----FIEVWNFTTGKIRK-  136 (482)
Q Consensus        64 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~dg-----~v~iwd~~~~~~~~-  136 (482)
                      -+.++.+++......++-......   ..+.+. .+... |..+....+..+|++-+.|+     .|+||+++..+... 
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~s~~---~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNSSFQ---LIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             cCCCceEEEeeccccEEEecccce---eeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            344555555555555554432221   111111 34444 55555555557888877654     59999997543111 


Q ss_pred             --cc---ccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc---CCCeEeEEeecccCCCeEEEEEccCCCEE
Q psy8448         137 --DL---KYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI---ATGQCLRKLEKAHSLGVTCIQFSRDNSQI  208 (482)
Q Consensus       137 --~~---~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~---~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  208 (482)
                        .+   ..-.. .......++.+++.+.+-+.+|+|-.+|.|..+.=   +.......+......+|+.+++..+++.+
T Consensus       108 P~c~~~~ri~~~-~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  108 PQCLYEHRIFTI-KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             cceeeeeeeecc-CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence              00   00000 11113578999999999999999999999998852   11112223334456789999999888773


Q ss_pred             EEEECCCeEEEEeCCCCce-EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q psy8448         209 LTASFDTYVRIHGLKSGKM-LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF  273 (482)
Q Consensus       209 ~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  273 (482)
                      +.+..-..|.+|.+....+ ...+..|+....|-.+++....+++++.+ .+.+||.....+-..+
T Consensus       187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAF  251 (933)
T ss_pred             EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeee
Confidence            3333356799999874442 44577788899999998766656666554 5999998865544444

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.16  E-value=0.001  Score=61.79  Aligned_cols=204  Identities=14%  Similarity=0.167  Sum_probs=111.0

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-----CC---CEE
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-----DS---EML  165 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-----~~---~~l  165 (482)
                      .+.....++|++++.|.=| ++|.|..+|.+.|.|++....+.................++++.|.-     |+   -.+
T Consensus        80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             hheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            3444568999999998544 99999999999999998887776544333111222346788888873     22   378


Q ss_pred             EEEeCCCcEEEEEcC--C-CeEeEEee---cccCCCeEEEE-EccC-C-------------------CEEEEEECCCeEE
Q psy8448         166 ASGSQSGKVKIWKIA--T-GQCLRKLE---KAHSLGVTCIQ-FSRD-N-------------------SQILTASFDTYVR  218 (482)
Q Consensus       166 ~~~~~dg~i~iwd~~--~-~~~~~~~~---~~~~~~v~~i~-~~~~-~-------------------~~l~~~~~dg~i~  218 (482)
                      ++|+..|.+.+|.+.  . +.....+.   ..+.++|..+. ++.+ |                   +-+++...+..++
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            889999999999874  1 21111111   23556666555 3221 1                   1234444478899


Q ss_pred             EEeCCCCceEEEeeccccceeEEEEc-----CCCCEEEEEeCCCcEEEEECCCCceeeeeeccC-CCccceeEEEEcCCC
Q psy8448         219 IHGLKSGKMLKEFRGHSSFVNDITFT-----ADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG-ASDIAVNSIHLLPKN  292 (482)
Q Consensus       219 i~d~~~~~~~~~~~~~~~~i~~l~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~  292 (482)
                      ++...+.+...+.....-....+++-     ..+..|++-..+|.+++|.+-..+.+..+.... .....+....++++|
T Consensus       239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence            99998877665544222233344553     356678888999999999999988887776421 122334455667776


Q ss_pred             CCEEEEE
Q psy8448         293 TEHFVVC  299 (482)
Q Consensus       293 ~~~l~~~  299 (482)
                       +.++..
T Consensus       319 -di~~~~  324 (395)
T PF08596_consen  319 -DIFYWT  324 (395)
T ss_dssp             --EEEE-
T ss_pred             -CEEEEe
Confidence             444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.14  E-value=0.0017  Score=59.32  Aligned_cols=175  Identities=13%  Similarity=0.107  Sum_probs=110.9

Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEcc---C----CCEEEEEEC----------CCeEEEEeCCCC----ceEEE
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR---D----NSQILTASF----------DTYVRIHGLKSG----KMLKE  230 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~---~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~  230 (482)
                      ..|++.|..+.+.+..+.......+.+++...   +    ..+|++|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35888888888877776555555566555433   2    467777653          289999999884    12221


Q ss_pred             e--eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEE
Q psy8448         231 F--RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI  307 (482)
Q Consensus       231 ~--~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i  307 (482)
                      +  ....++|++++-- ++. |+++. ++.|.+|++...+ ....-..  .....+.++....   +++++|.....+.+
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~--~~~~~i~sl~~~~---~~I~vgD~~~sv~~  153 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFY--DSPFYITSLSVFK---NYILVGDAMKSVSL  153 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEET---TEEEEEESSSSEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhhee--cceEEEEEEeccc---cEEEEEEcccCEEE
Confidence            1  2357889998876 344 55444 4789999998877 3333221  2233566666653   58889988888887


Q ss_pred             EEc--CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         308 MNM--QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       308 ~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +..  .+..+..+..... ...++++.+-++++.++++..+|.+.++..+
T Consensus       154 ~~~~~~~~~l~~va~d~~-~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQ-PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEETTTE-EEEEEEESS--BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEccCCEEEEEEecCC-CccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            755  4554555443221 4567888888677799999999999966543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.12  E-value=0.0018  Score=55.43  Aligned_cols=170  Identities=11%  Similarity=0.196  Sum_probs=122.1

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      ...+.++.|+|+.+.|++......-.++=..+|+.++++....-.....+.+..+|+++++--.++.+.++.+.....+.
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            45699999999999999988887777777778999888754444556678888888888888888888888776553221


Q ss_pred             Ee----------eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCC-------CccceeEEEEcCCC
Q psy8448         230 EF----------RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA-------SDIAVNSIHLLPKN  292 (482)
Q Consensus       230 ~~----------~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~  292 (482)
                      ..          .........++|+|..+.|+.+-+-.-+.||.+..............       .-..+.++.|.+..
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~  244 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT  244 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence            11          11245577899999999999888877788887664321111110001       12457788899887


Q ss_pred             CCEEEEEeCCCeEEEEEcCCcEEEEec
Q psy8448         293 TEHFVVCNKTNTVVIMNMQGQIVRSLS  319 (482)
Q Consensus       293 ~~~l~~~~~d~~i~i~d~~~~~~~~~~  319 (482)
                      +.+++.+..++.+.-.|..|..+..+.
T Consensus       245 ~~LLVLS~ESr~l~Evd~~G~~~~~ls  271 (316)
T COG3204         245 NSLLVLSDESRRLLEVDLSGEVIELLS  271 (316)
T ss_pred             CcEEEEecCCceEEEEecCCCeeeeEE
Confidence            788888888999999999888765554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.09  E-value=0.0091  Score=56.27  Aligned_cols=190  Identities=13%  Similarity=0.174  Sum_probs=98.7

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccc-ccccccccEEEEEEcCCCCEEEEE
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD-NFMLMEEAVMSLAYSRDSEMLASG  168 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~h~~~i~~l~~~~~~~~l~~~  168 (482)
                      .+...+...+ +.|-++.|+.+.++ +.-..||.+++||+. |+.  .+...... .....+..+....+..+|  ++.-
T Consensus        71 ~ll~~i~w~~-~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvL  143 (410)
T PF04841_consen   71 KLLSSIPWDS-GRIVGMGWTDDEEL-VVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVL  143 (410)
T ss_pred             CEeEEEEECC-CCEEEEEECCCCeE-EEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccCCCC--EEEE
Confidence            3444455555 78999999886554 455679999999986 333  22111110 000011223333333355  3333


Q ss_pred             eCCCcEEEEEcCCCe-EeEEeec--c-----cCC-CeEE-EEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccce
Q psy8448         169 SQSGKVKIWKIATGQ-CLRKLEK--A-----HSL-GVTC-IQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFV  238 (482)
Q Consensus       169 ~~dg~i~iwd~~~~~-~~~~~~~--~-----~~~-~v~~-i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  238 (482)
                      ..++.+.+.+-.... ..+.+..  .     +.. .... ..++.+....+....++.+.+.+-...+.   +. ..+++
T Consensus       144 t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i  219 (410)
T PF04841_consen  144 TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPI  219 (410)
T ss_pred             CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCe
Confidence            344444444322211 1111100  0     000 0000 12333444444444455555444322211   22 24689


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC
Q psy8448         239 NDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN  292 (482)
Q Consensus       239 ~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  292 (482)
                      ..|+.||++++++.-..+|.+.+.+.+-.+....+..  ........+.|+.++
T Consensus       220 ~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~--~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  220 IKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT--DSKSPPKQMAWCGND  271 (410)
T ss_pred             EEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec--CcCCCCcEEEEECCC
Confidence            9999999999999999999999998776666665543  223455677777654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.09  E-value=0.0018  Score=54.93  Aligned_cols=234  Identities=14%  Similarity=0.165  Sum_probs=141.6

Q ss_pred             EEEEcCCC-CEEEEEeCCC-eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEE
Q psy8448         105 CARFSPDG-QYLITGSVDG-FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIW  177 (482)
Q Consensus       105 ~~~~s~~~-~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iw  177 (482)
                      .++|+|.. .-++.+-.-| ...++|.+..+....+.......+.+|.      .|||||.+|...-.|     |.|-||
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence            57788844 4455554444 4678999998888777766666666663      599999998887544     789999


Q ss_pred             EcCCC-eEeEEeecccCCCeEEEEEccCCCEEEEEEC------------------CCeEEEEeCCCCceEEE--ee--cc
Q psy8448         178 KIATG-QCLRKLEKAHSLGVTCIQFSRDNSQILTASF------------------DTYVRIHGLKSGKMLKE--FR--GH  234 (482)
Q Consensus       178 d~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~--~~--~~  234 (482)
                      |.+.+ +.+..+ ..|.-.-..+.+.+||+.++.+..                  .-.+.+.|..+++.+.+  +.  .+
T Consensus       146 d~r~~fqrvgE~-~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~  224 (366)
T COG3490         146 DAREGFQRVGEF-STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR  224 (366)
T ss_pred             ecccccceeccc-ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence            98754 234455 567777788999999998887642                  11344445455554432  22  24


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeeeeeccC----CCccceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         235 SSFVNDITFTADGHSVLSASSDGT-----VKMWNLKTTECTSTFKSLG----ASDIAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       235 ~~~i~~l~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                      .-.|..++..+||..++.+-..|.     -.+=-...++.+..+....    .....|-+|+.+.+..-..+++-..+..
T Consensus       225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~  304 (366)
T COG3490         225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA  304 (366)
T ss_pred             hcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence            456888999988886655433221     1111122333333322110    2234577888887663444455566778


Q ss_pred             EEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         306 VIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       306 ~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      .+||. +|..+....-.     ....++  +...-+++.+.+|.+.++
T Consensus       305 vi~da~tG~vv~~a~l~-----daaGva--~~~~gf~vssg~G~~~~~  345 (366)
T COG3490         305 VIWDAATGAVVSEAALP-----DAAGVA--AAKGGFAVSSGQGRIIFY  345 (366)
T ss_pred             EEEEcCCCcEEeccccc-----ccccce--eccCceEEecCCceEEec
Confidence            89999 56655443321     122232  334445666777888844

>KOG3621|consensus

Probab=98.08  E-value=4.9e-05  Score=71.87  Aligned_cols=157  Identities=17%  Similarity=0.198  Sum_probs=105.7

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      ...+.--++...+++++.|+.-|.+++|+-..++....-..+..+.+.....+++..++|.|+..|.|.++-+....+..
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            34555556667789999999999999999655543332212234456667788888889999999999999887643211


Q ss_pred             -----Ee-eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC
Q psy8448         230 -----EF-RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT  302 (482)
Q Consensus       230 -----~~-~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  302 (482)
                           .. +.|...|++++|++++..+++|...|+|.+-.+.+. ........+....+.|..+....   .++++++.-
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q---~~LLVStl~  189 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ---SYLLVSTLT  189 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc---ceehHhhhh
Confidence                 11 237788999999999999999999999999888872 11111111124466777777665   344444433


Q ss_pred             CeEEEEEc
Q psy8448         303 NTVVIMNM  310 (482)
Q Consensus       303 ~~i~i~d~  310 (482)
                      ..+ +++.
T Consensus       190 r~~-Lc~t  196 (726)
T KOG3621|consen  190 RCI-LCQT  196 (726)
T ss_pred             hhh-eeec
Confidence            333 3344

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.06  E-value=0.005  Score=57.98  Aligned_cols=190  Identities=9%  Similarity=0.156  Sum_probs=103.0

Q ss_pred             eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc--------cCC
Q psy8448         123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA--------HSL  194 (482)
Q Consensus       123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~  194 (482)
                      .|.||+. .|+.+..+...        .+.+.++.|+.+. .|++...||.++++|+....   .+..+        ...
T Consensus        62 ~I~iys~-sG~ll~~i~w~--------~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~  128 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWD--------SGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLEC  128 (410)
T ss_pred             EEEEECC-CCCEeEEEEEC--------CCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce---eechhhhccccCcccc
Confidence            5999985 46666666665        2689999999865 56677799999999986333   22111        111


Q ss_pred             CeEEEEEccCCCEEEEEECCCeEEEEeCCCCc-eEEEee---cccc------ceeE-EEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         195 GVTCIQFSRDNSQILTASFDTYVRIHGLKSGK-MLKEFR---GHSS------FVND-ITFTADGHSVLSASSDGTVKMWN  263 (482)
Q Consensus       195 ~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~~------~i~~-l~~~~~~~~l~~~~~dg~i~i~d  263 (482)
                      .+....+..+|  ++.-..++.+.+..--... ....+.   ....      .... ..++.+....+....++.+.+.+
T Consensus       129 ~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~  206 (410)
T PF04841_consen  129 RIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIID  206 (410)
T ss_pred             cccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEE
Confidence            12222333345  3323335555444322211 111111   0000      0000 22333444444445555555444


Q ss_pred             CCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         264 LKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      -...+.   +    ....++..++.+|++ ++++.-..+|.+.+.+.+ .+.+..+....  ......+.|+-+.
T Consensus       207 ~~~~~~---i----~~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~d  271 (410)
T PF04841_consen  207 ENSFKQ---I----DSDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGND  271 (410)
T ss_pred             cccccc---c----cCCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecCc--CCCCcEEEEECCC
Confidence            322211   1    234689999999999 788888899999888774 33444444331  3445667776553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.05  E-value=0.0064  Score=54.33  Aligned_cols=222  Identities=14%  Similarity=0.112  Sum_probs=131.2

Q ss_pred             EEEcCCCCEE-EEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE
Q psy8448         106 ARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC  184 (482)
Q Consensus       106 ~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~  184 (482)
                      ..|.++.+.| .+--..+.|+-|+..+++.... ..         .+.+.++..-..+..|+++..  -+.+++.+++..
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~~---------p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~   97 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVF-PS---------PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGK   97 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-EC---------CCCcccceeecCCCeEEEEcc--ccEEEeccCCce
Confidence            3577777644 4444678899999876653321 11         233455555444555665533  466677665554


Q ss_pred             eEEeec---c-cCCCeEEEEEccCCCEEEEEEC-----------CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         185 LRKLEK---A-HSLGVTCIQFSRDNSQILTASF-----------DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       185 ~~~~~~---~-~~~~v~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      ...+..   . .....+.....|+|.+-++...           -|.|+.+|. .+...+.+..+-..-+.|+|+||++.
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence            322211   1 1234567888888876554433           134555554 46666666665666789999999988


Q ss_pred             EEEEeC-CCcEEEEECCC--Ccee--eeeeccCCCccceeEEEEcCCCCCEEEEEeCCC-eEEEEEcCCcEEEEecCCcc
Q psy8448         250 VLSASS-DGTVKMWNLKT--TECT--STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN-TVVIMNMQGQIVRSLSSGKR  323 (482)
Q Consensus       250 l~~~~~-dg~i~i~d~~~--~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~  323 (482)
                      |+.+.. .+.|.-|++..  +...  ..+..........-.++...+| .+.+++..+| .|.+|+.+|+.+..+...  
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pdG~l~~~i~lP--  253 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPDGKLLGEIKLP--  253 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCCCcEEEEEECC--
Confidence            877765 47788887763  1111  1111111233444566677777 5554444443 899999999998888765  


Q ss_pred             cCcCEEEEEEc-CCCCEEEEEe
Q psy8448         324 EGGDFLCCTTS-PRGEWIYCVG  344 (482)
Q Consensus       324 ~~~~v~~~~~~-~~g~~l~~~~  344 (482)
                       ...+++++|- |+.+.|++.+
T Consensus       254 -~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         254 -VKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             -CCCCccceEeCCCcCEEEEEe
Confidence             3556777774 4455555433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.03  E-value=0.0065  Score=53.95  Aligned_cols=203  Identities=15%  Similarity=0.193  Sum_probs=126.4

Q ss_pred             EEEEEcCCCCEEEEEe--CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC-
Q psy8448         104 ECARFSPDGQYLITGS--VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA-  180 (482)
Q Consensus       104 ~~~~~s~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-  180 (482)
                      ..++++.|+++++...  -.-.|.|-|+..++....+..+.          +..+--+++ +.+.+-|.||.+.-..+. 
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----------C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~  166 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----------CWLIYPSGN-RGFSMLCGDGSLLTVTLDA  166 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----------EEEEEEEET-TEEEEEETTSCEEEEEETS
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----------EEEEEecCC-CceEEEecCCceEEEEECC
Confidence            3457899999988753  44579999999999887776542          222222222 457788899999999887 


Q ss_pred             CCeEeEEe---ecccCCCe-EEEEEccCCCEEEEEECCCeEEEEeCCCCceE--EEeec----------cccceeEEEEc
Q psy8448         181 TGQCLRKL---EKAHSLGV-TCIQFSRDNSQILTASFDTYVRIHGLKSGKML--KEFRG----------HSSFVNDITFT  244 (482)
Q Consensus       181 ~~~~~~~~---~~~~~~~v-~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~i~~l~~~  244 (482)
                      .|+...+.   ......++ ..-++...+..++--+.+|.|+-.|+......  ..+..          -.+.-.-++++
T Consensus       167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~  246 (342)
T PF06433_consen  167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH  246 (342)
T ss_dssp             TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred             CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence            45443221   11122222 23344455556666788999999998665432  12210          01223457787


Q ss_pred             CCCCEEEEEeC---CC-------cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEc-CC
Q psy8448         245 ADGHSVLSASS---DG-------TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNM-QG  312 (482)
Q Consensus       245 ~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~-~~  312 (482)
                      +..+.|++.-.   ++       .|-++|+.+++.+.++.    -..++.+|..+.+...+|++.+ .++.+.+||. +|
T Consensus       247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            76665554321   11       38888999999998885    2457889999998877776654 5799999999 78


Q ss_pred             cEEEEecCC
Q psy8448         313 QIVRSLSSG  321 (482)
Q Consensus       313 ~~~~~~~~~  321 (482)
                      +.+..+...
T Consensus       323 k~~~~~~~l  331 (342)
T PF06433_consen  323 KLVRSIEQL  331 (342)
T ss_dssp             -EEEEE---
T ss_pred             cEEeehhcc
Confidence            888888753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4640|consensus

Probab=98.01  E-value=3.1e-05  Score=72.17  Aligned_cols=94  Identities=15%  Similarity=0.237  Sum_probs=77.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE-EEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM-SLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~-~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      ...|.-+.|+|.-.++|++..+|.|.++.++ .+.+.+++.+.        .+++ +++|.|||+.||+|-.||+|++.|
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~--------~~v~~sL~W~~DGkllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPG--------ENVTASLCWRPDGKLLAVGFKDGTIRLHD   90 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCC--------CccceeeeecCCCCEEEEEecCCeEEEEE
Confidence            3468889999999999999999999999887 55566666443        4455 999999999999999999999999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEc
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFS  202 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~  202 (482)
                      ++++..+......-...|.++.|.
T Consensus        91 ve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   91 VEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             ccCCCceeccccccccchheeecc
Confidence            999988877434456678888886

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.97  E-value=0.0083  Score=58.51  Aligned_cols=153  Identities=12%  Similarity=0.113  Sum_probs=95.7

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEE-EEEcCCCCEEEEEe------CCCcEEEEEcCCCeE
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMS-LAYSRDSEMLASGS------QSGKVKIWKIATGQC  184 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~-l~~~~~~~~l~~~~------~dg~i~iwd~~~~~~  184 (482)
                      +..++.++.|+.|.-.|..+|+.+-.........    ...+++ .... ++ .++++.      .+|.|..+|.++|+.
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~----~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKA----GYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccc----cccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCce
Confidence            3466777889999999999999876654321100    001111 0111 33 455543      268999999999998


Q ss_pred             eEEeecccCC------------------------------Ce-EEEEEccCCCEEEEEECC-----C-----------eE
Q psy8448         185 LRKLEKAHSL------------------------------GV-TCIQFSRDNSQILTASFD-----T-----------YV  217 (482)
Q Consensus       185 ~~~~~~~~~~------------------------------~v-~~i~~~~~~~~l~~~~~d-----g-----------~i  217 (482)
                      +..+......                              .+ ..+++.|+..+++.+..+     +           .|
T Consensus       194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~  273 (527)
T TIGR03075       194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI  273 (527)
T ss_pred             eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence            8776322111                              01 134666666666665522     2           68


Q ss_pred             EEEeCCCCceEEEeecccccee---------EEEEcCCCC---EEEEEeCCCcEEEEECCCCcee
Q psy8448         218 RIHGLKSGKMLKEFRGHSSFVN---------DITFTADGH---SVLSASSDGTVKMWNLKTTECT  270 (482)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~~i~---------~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~  270 (482)
                      .-.|+++|+....++.....+.         -+....+|+   .++.++.+|.+.+.|.++++.+
T Consensus       274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            8889999998877764322222         223334665   6778999999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.97  E-value=0.0012  Score=47.92  Aligned_cols=100  Identities=22%  Similarity=0.255  Sum_probs=69.5

Q ss_pred             EEEEEEcC-CC---CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         103 VECARFSP-DG---QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       103 v~~~~~s~-~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      |++|++.. ++   +.|++|+.|..|++|+-  .+.+..+..         .+.|++|+-... ..++.+..+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e---------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE---------TDKVTSLCSLGG-GRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec---------ccceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence            66777655 32   68999999999999974  344444433         367888888776 5699999999999998


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEcc-C--C-CEEEEEECCCeEE
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSR-D--N-SQILTASFDTYVR  218 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~-~--~-~~l~~~~~dg~i~  218 (482)
                      -  ...+....  ....+.++++.. +  | ..|++|-.+|.|-
T Consensus        70 ~--~~RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   70 R--SQRLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             C--cceeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4  34455553  233366666654 2  2 3688888888774

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.96  E-value=0.013  Score=53.03  Aligned_cols=278  Identities=14%  Similarity=0.107  Sum_probs=134.5

Q ss_pred             ccCCCCCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccc
Q psy8448          60 HQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK  139 (482)
Q Consensus        60 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  139 (482)
                      +.|+.++|..+...+....-++.-..+.......++..+-........++|+.+.++.......|+-.|+++.+....+.
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            45677888877776665566666666666666666665543434456778988888776666789999999987655555


Q ss_pred             cccccccccccccEEEEEEc--CCCCEEEEEeC---C-------------------CcEEEEEcCCCeEeEEeecccCCC
Q psy8448         140 YQAQDNFMLMEEAVMSLAYS--RDSEMLASGSQ---S-------------------GKVKIWKIATGQCLRKLEKAHSLG  195 (482)
Q Consensus       140 ~~~~~~~~~h~~~i~~l~~~--~~~~~l~~~~~---d-------------------g~i~iwd~~~~~~~~~~~~~~~~~  195 (482)
                      .+        +..+-...|.  .++..++-.-.   |                   ..|...|+.+|+....+  ....-
T Consensus       120 ~p--------~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~--~~~~w  189 (386)
T PF14583_consen  120 VP--------DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF--EDTDW  189 (386)
T ss_dssp             ----------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE--EESS-
T ss_pred             CC--------cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE--ecCcc
Confidence            44        2334344553  35555443211   1                   24666778887765554  24556


Q ss_pred             eEEEEEccCCCEEEEEECCC-----eEEEEeCCC-CceEEEeecc--ccceeEEEEcCCCCEEEEEe-----CCCcEEEE
Q psy8448         196 VTCIQFSRDNSQILTASFDT-----YVRIHGLKS-GKMLKEFRGH--SSFVNDITFTADGHSVLSAS-----SDGTVKMW  262 (482)
Q Consensus       196 v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~-~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~-----~dg~i~i~  262 (482)
                      +..+.|+|....+++=+..|     .-+||-+++ +.....+..+  ...+..=-|.|||..|.--+     .+..|.-+
T Consensus       190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~  269 (386)
T PF14583_consen  190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY  269 (386)
T ss_dssp             EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred             ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence            88999999655444433333     125554432 3333333322  23345556889998776432     24457778


Q ss_pred             ECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCcEEEEecCCcc---
Q psy8448         263 NLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT----------------NTVVIMNMQGQIVRSLSSGKR---  323 (482)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~---  323 (482)
                      |+.+++......     ......+..++++ .+++-=+.|                ..|++++........+..+..   
T Consensus       270 d~~t~~~~~~~~-----~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~  343 (386)
T PF14583_consen  270 DPDTGERRRLME-----MPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWK  343 (386)
T ss_dssp             -TTT--EEEEEE-----E-SEEEEEE-TTS-SEEEEEE-------------------EEEEEETTTTEEEEEEE------
T ss_pred             CCCCCCceEEEe-----CCceeeeEEcCCC-CEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcce
Confidence            888876543322     1234456667777 565543333                145667775443333332210   


Q ss_pred             ----c-CcCEEEEEEcCCCCEEEE-EeCCcEEEEEe
Q psy8448         324 ----E-GGDFLCCTTSPRGEWIYC-VGEDMVLVVRL  353 (482)
Q Consensus       324 ----~-~~~v~~~~~~~~g~~l~~-~~~dg~i~iw~  353 (482)
                          + ...=....|+|||++|+. +...|...||-
T Consensus       344 v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  344 VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             -BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             eecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence                0 011246899999998874 55577777653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.93  E-value=0.01  Score=50.79  Aligned_cols=201  Identities=11%  Similarity=0.114  Sum_probs=125.5

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDG--FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS  167 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~  167 (482)
                      .......+..+.-...+.|..+|.++-+.+.-|  .|+.+|+.+++...........       --..++.. +++....
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-------FgEGit~~-~d~l~qL  105 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-------FGEGITIL-GDKLYQL  105 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---------EEEEEEE-TTEEEEE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-------cceeEEEE-CCEEEEE
Confidence            334444434445566888878888888777655  7999999999987766555321       22233333 2333334


Q ss_pred             EeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc--c---cceeEEE
Q psy8448         168 GSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH--S---SFVNDIT  242 (482)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~i~~l~  242 (482)
                      .=.++...+||..+-+.+.++...  ..=..++  .+++.|+.......|+++|.++.+....+.-.  .   ..++.+.
T Consensus       106 TWk~~~~f~yd~~tl~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE  181 (264)
T PF05096_consen  106 TWKEGTGFVYDPNTLKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE  181 (264)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred             EecCCeEEEEccccceEEEEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence            447889999999999888887533  3445565  46778888877889999999988877666422  2   2456677


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC------------CCccceeEEEEcCCCCCEEEEEeCCC
Q psy8448         243 FTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG------------ASDIAVNSIHLLPKNTEHFVVCNKTN  303 (482)
Q Consensus       243 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~i~~~~~~~~~l~~~~~d~  303 (482)
                      |. +|...+=.-....|...|..+|+....+....            ....-.+.|++.|....++++|-.=.
T Consensus       182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp  253 (264)
T PF05096_consen  182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWP  253 (264)
T ss_dssp             EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred             EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence            75 56655655567778899999998776553110            11356899999999867777764433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4640|consensus

Probab=97.90  E-value=8.1e-05  Score=69.56  Aligned_cols=95  Identities=15%  Similarity=0.167  Sum_probs=80.6

Q ss_pred             CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecccccee-EEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q psy8448         193 SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVN-DITFTADGHSVLSASSDGTVKMWNLKTTECTS  271 (482)
Q Consensus       193 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  271 (482)
                      ...+.-+.|+|.-..+|++..+|.|.+..+. .+.+.++.-+...++ +++|.|||+.|++|-.||+|++.|..++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457889999999999999999999999987 777888887777777 99999999999999999999999999988776


Q ss_pred             eeeccCCCccceeEEEEcC
Q psy8448         272 TFKSLGASDIAVNSIHLLP  290 (482)
Q Consensus       272 ~~~~~~~~~~~v~~i~~~~  290 (482)
                      .+..  ....+|.++.|.+
T Consensus        99 ~~~~--s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLF--SVETDISKGIWDR  115 (665)
T ss_pred             cccc--ccccchheeeccc
Confidence            6321  4456788888864

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.86  E-value=0.0019  Score=46.86  Aligned_cols=102  Identities=19%  Similarity=0.218  Sum_probs=70.1

Q ss_pred             eEEEEEcc---CC-CEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q psy8448         196 VTCIQFSR---DN-SQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS  271 (482)
Q Consensus       196 v~~i~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  271 (482)
                      |+++++..   +| ..|++|+.|..|++|+-  .+.+.++. ....|++++-... ..++.+-.+|+|-+|+-..  ...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            56666654   32 57999999999999984  46677777 4566888887765 5699999999999998643  223


Q ss_pred             eeeccCCCccceeEEEEc---CCCCCEEEEEeCCCeEEE
Q psy8448         272 TFKSLGASDIAVNSIHLL---PKNTEHFVVCNKTNTVVI  307 (482)
Q Consensus       272 ~~~~~~~~~~~v~~i~~~---~~~~~~l~~~~~d~~i~i  307 (482)
                      ..+    .+..+.++++.   .+|...|++|-.+|.|-+
T Consensus        76 RiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   76 RIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            332    23335555543   345567888888887743

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.83  E-value=0.00078  Score=67.04  Aligned_cols=140  Identities=16%  Similarity=0.245  Sum_probs=95.8

Q ss_pred             CEEEEE-ECCCeEEEEeCCCCceEEEeeccccc-eeEEEEcC-----CCCEEEEEeCCCcEEEEECCCCc--eee-eeec
Q psy8448         206 SQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSF-VNDITFTA-----DGHSVLSASSDGTVKMWNLKTTE--CTS-TFKS  275 (482)
Q Consensus       206 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~l~~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~-~~~~  275 (482)
                      .+|+.- .....|+-.|++.|+.+..+..+... |..++-..     +....+.|-.+..+..||.|-..  ++. ....
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            344443 34578999999999999999877654 54443221     13345667778889999998643  221 1111


Q ss_pred             cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         276 LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       276 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      . .......|++-..+|  .+++|+.+|.|++||..|+..++...+  -..+|..+..+.||+||++.+..-.+.
T Consensus       574 Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~--lG~pI~~iDvt~DGkwilaTc~tyLlL  643 (794)
T PF08553_consen  574 Y-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPG--LGDPIIGIDVTADGKWILATCKTYLLL  643 (794)
T ss_pred             c-ccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCC--CCCCeeEEEecCCCcEEEEeecceEEE
Confidence            1 344567788777775  899999999999999766543333322  268999999999999999777654444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.76  E-value=0.0038  Score=61.28  Aligned_cols=185  Identities=13%  Similarity=0.152  Sum_probs=102.1

Q ss_pred             CcEEEEEEcCCCCEEEEEe------CCC--eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-
Q psy8448         101 SHVECARFSPDGQYLITGS------VDG--FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-  171 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-  171 (482)
                      ..+...+++|+|+.+|...      .|+  .|.+++.. +.. ..+..         ....+.-.|+|+|..|++.... 
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~---------g~~~t~PsWspDG~~lw~v~dg~  418 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE---------GHSLTRPSWSLDADAVWVVVDGN  418 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec---------CCCCCCceECCCCCceEEEecCc
Confidence            4678999999999987664      244  45555542 221 22211         1237778899998877776532 


Q ss_pred             -----------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE---EeCCCCce-E---EEee-
Q psy8448         172 -----------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI---HGLKSGKM-L---KEFR-  232 (482)
Q Consensus       172 -----------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~-  232 (482)
                                 +.+.+.++..++...    .....|..+.|+|||..++... ++.|++   -....++. +   ..+. 
T Consensus       419 ~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~  493 (591)
T PRK13616        419 TVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP  493 (591)
T ss_pred             ceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec
Confidence                       223333333332211    2345799999999999988776 577777   44444541 1   1122 


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                      .....+.++.|.+++.+ +++..++.-.+|.+.- |.....+. ......++..|+-.+.   -+++...++.+.
T Consensus       494 ~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~-~~n~~~~v~~vaa~~~---~iyv~~~~g~~~  563 (591)
T PRK13616        494 GLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALP-SRNLSAPVVAVAASPS---TVYVTDARAVLQ  563 (591)
T ss_pred             ccCCccccceEecCCEE-EEEecCCCCceEEEecCCccccccC-CCCccCceEEEecCCc---eEEEEcCCceEE
Confidence            23334688999998885 4555544444454332 21111111 1112455666666652   344445555433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.76  E-value=0.0036  Score=62.52  Aligned_cols=143  Identities=10%  Similarity=0.163  Sum_probs=94.1

Q ss_pred             CCEEEEE-eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-----CCCEEEEEECCCeEEEEeCCCCc--eEEE-ee
Q psy8448         162 SEMLASG-SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-----DNSQILTASFDTYVRIHGLKSGK--MLKE-FR  232 (482)
Q Consensus       162 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~~  232 (482)
                      .++|+.- .....++-.|++.|+.+..+......+|..++-..     .....++|-.++.+..||.|-..  .+.. ..
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444433 34578999999999999998544444455554321     23456778889999999998642  2211 11


Q ss_pred             --ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         233 --GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       233 --~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                        .......|++-+.+|. ||+|+.+|.||+||--..+....++   +-..+|..|..+.+| +++++.+ +..+.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp---~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALP---GLGDPIIGIDVTADG-KWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCce-EEEEeCCCcEEeecccchhhhhcCC---CCCCCeeEEEecCCC-cEEEEee-cceEEEEEE
Confidence              2344577888877765 9999999999999943322222333   667899999999999 5544444 345666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.75  E-value=0.019  Score=49.02  Aligned_cols=209  Identities=13%  Similarity=0.135  Sum_probs=125.1

Q ss_pred             cEEEEEEcCCC-CEEEEEeCCCc-EEEEEcCCCeEeEEeecccCC-CeEEEEEccCCCEEEEEECC-----CeEEEEeCC
Q psy8448         152 AVMSLAYSRDS-EMLASGSQSGK-VKIWKIATGQCLRKLEKAHSL-GVTCIQFSRDNSQILTASFD-----TYVRIHGLK  223 (482)
Q Consensus       152 ~i~~l~~~~~~-~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~  223 (482)
                      ....++++|.. .-++.+-.-|+ ..++|....+....+...... -.-.=.|+|||.+|...-.|     |.|-+||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            45567788843 34555555554 468888877766555211111 12233699999988876443     689999998


Q ss_pred             CC-ceEEEeeccccceeEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceeeeeecc-CCCccce
Q psy8448         224 SG-KMLKEFRGHSSFVNDITFTADGHSVLSASS------------------DGTVKMWNLKTTECTSTFKSL-GASDIAV  283 (482)
Q Consensus       224 ~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~~-~~~~~~v  283 (482)
                      .+ +.+.++..|.-....+.+.+||+.++.+..                  .-.+.+.|..+++.+.+.... ..+...+
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi  228 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI  228 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence            54 456678888888889999999999887643                  113445555555554443211 1334567


Q ss_pred             eEEEEcCCCCCEEEEEeCCCe------EEEEEcCCcEEEEecCCcc----cCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         284 NSIHLLPKNTEHFVVCNKTNT------VVIMNMQGQIVRSLSSGKR----EGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       284 ~~i~~~~~~~~~l~~~~~d~~------i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ..++..++| ..++.+-..|.      +.-.-..++.+..+.....    -...|-+++.+.+..+++..+-.|...+  
T Consensus       229 RHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v--  305 (366)
T COG3490         229 RHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV--  305 (366)
T ss_pred             eeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE--
Confidence            788888887 44444432221      0001113444444332211    1245667888877777777777666664  


Q ss_pred             ehhhhhhhcccccceeeeeccccee
Q psy8448         354 IQQYLKESNLMKTLQCLQEETGVSL  378 (482)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~  378 (482)
                                     +|+..+|...
T Consensus       306 ---------------i~da~tG~vv  315 (366)
T COG3490         306 ---------------IWDAATGAVV  315 (366)
T ss_pred             ---------------EEEcCCCcEE
Confidence                           8899888433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=0.014  Score=50.15  Aligned_cols=162  Identities=9%  Similarity=0.138  Sum_probs=113.1

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      |-+..|.++.|+|+.+.|++......-.|+=...|+.+.+++....       .....+.|..++++.++--.++.+.++
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-------~DpE~Ieyig~n~fvi~dER~~~l~~~  155 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-------SDPETIEYIGGNQFVIVDERDRALYLF  155 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-------CChhHeEEecCCEEEEEehhcceEEEE
Confidence            5556699999999999998888778777887778998888876653       345677888888877777788888888


Q ss_pred             EcCCCeEeEEee--------ccc-CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce---EEEeecc-------ccce
Q psy8448         178 KIATGQCLRKLE--------KAH-SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM---LKEFRGH-------SSFV  238 (482)
Q Consensus       178 d~~~~~~~~~~~--------~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~-------~~~i  238 (482)
                      .+..........        ..+ +.....++|.|.+..|+.+-+..-+.||.+.....   ......+       -..|
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            776553221111        112 56688999999999999998888777777653321   1111111       2346


Q ss_pred             eEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q psy8448         239 NDITFTAD-GHSVLSASSDGTVKMWNLKT  266 (482)
Q Consensus       239 ~~l~~~~~-~~~l~~~~~dg~i~i~d~~~  266 (482)
                      .++.|++. +.+|+-+.+++.+...|...
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecCC
Confidence            77888874 55566666777777777653

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.67  E-value=0.0077  Score=59.19  Aligned_cols=187  Identities=13%  Similarity=0.136  Sum_probs=108.8

Q ss_pred             ccEEEEEEcCCCCEEEEEe------CCC--cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC--------
Q psy8448         151 EAVMSLAYSRDSEMLASGS------QSG--KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD--------  214 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--------  214 (482)
                      ..+...+++|+|+.++..-      .|+  .+.+++. .+.. ..+..+  .....-.|+|+|+.|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            4678899999999887765      243  4555554 2222 333222  247889999998888777533        


Q ss_pred             ----CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEE---EECCCCce-eeeeeccC-CCccceeE
Q psy8448         215 ----TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM---WNLKTTEC-TSTFKSLG-ASDIAVNS  285 (482)
Q Consensus       215 ----g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~~~~~~~~-~~~~~v~~  285 (482)
                          +.+.+.+++.++...   ...+.|..+.|+|||..++... ++.|.+   -....++. +.....+. .....+.+
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence                233333444333322   2356799999999999988766 467776   44344531 10111111 22334578


Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         286 IHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       286 i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +.|.+++ .+ +++..++.-.+|.+  .|.....+... ....++..++-+++  -|+....+|.+.
T Consensus       502 l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~-n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        502 LDWRTGD-SL-VVGRSDPEHPVWYVNLDGSNSDALPSR-NLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ceEecCC-EE-EEEecCCCCceEEEecCCccccccCCC-CccCceEEEecCCc--eEEEEcCCceEE
Confidence            9999988 44 45555544444544  55544332221 12456677777763  566667777655

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.65  E-value=0.039  Score=51.31  Aligned_cols=84  Identities=13%  Similarity=0.163  Sum_probs=54.2

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC---------------C--EEE
Q psy8448         235 SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT---------------E--HFV  297 (482)
Q Consensus       235 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---------------~--~l~  297 (482)
                      ...+.+++.+|++++.++...-|.|.++|+.++..++.++....  ..+.-+.....+.               .  +++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD--AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc--ceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            34578899999999888888889999999999988887774221  1111111111100               1  233


Q ss_pred             EEeCCCeEEEEEc-CCcEEEEecC
Q psy8448         298 VCNKTNTVVIMNM-QGQIVRSLSS  320 (482)
Q Consensus       298 ~~~~d~~i~i~d~-~~~~~~~~~~  320 (482)
                      -+-..|.|.+|.+ .|..+..+..
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEEEEe
Confidence            3556788999998 5666655543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.63  E-value=0.024  Score=50.77  Aligned_cols=192  Identities=14%  Similarity=0.105  Sum_probs=112.2

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-----C--
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-----S--  171 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-----d--  171 (482)
                      +.+.+.++..-..+..|+++.  .-+.+++.+++.....+.......   -....+.+...|+|.+-++...     .  
T Consensus        64 ~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~---~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~  138 (307)
T COG3386          64 SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGL---PLNRPNDGVVDPDGRIWFGDMGYFDLGKSE  138 (307)
T ss_pred             CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCC---CcCCCCceeEcCCCCEEEeCCCccccCccc
Confidence            344455555554555566553  337778876665522221111100   0245678888999886555433     0  


Q ss_pred             --CcEEEEEcC-CCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-CeEEEEeCCC--Cc-----eEEEeeccccceeE
Q psy8448         172 --GKVKIWKIA-TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-TYVRIHGLKS--GK-----MLKEFRGHSSFVND  240 (482)
Q Consensus       172 --g~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~i~d~~~--~~-----~~~~~~~~~~~i~~  240 (482)
                        ..-.+|.+. .+...+.+ ..+-..-+.++|+||++.++.+... +.|.-|++..  +.     ....+....+..-.
T Consensus       139 ~~~~G~lyr~~p~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG  217 (307)
T COG3386         139 ERPTGSLYRVDPDGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG  217 (307)
T ss_pred             cCCcceEEEEcCCCCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc
Confidence              111344444 45555444 3445556789999999888777554 7888887752  11     11222334566778


Q ss_pred             EEEcCCCCEEEEEeCCC-cEEEEECCCCceeeeeeccCCCccceeEEEEcCC-CCCEEEEEe
Q psy8448         241 ITFTADGHSVLSASSDG-TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK-NTEHFVVCN  300 (482)
Q Consensus       241 l~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~~~  300 (482)
                      ++...+|.+.+++..+| .|.+|+.. ++.+..+.   .....+++++|--. ...+++++.
T Consensus       218 ~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~---lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         218 MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK---LPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE---CCCCCCccceEeCCCcCEEEEEec
Confidence            88889998776554444 89999988 88888876   33356667777543 323444443

>smart00320 WD40 WD40 repeats

Probab=97.62  E-value=4.8e-05  Score=44.13  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=31.2

Q ss_pred             CcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         449 HEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       449 ~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      ..+..|...|.++.|+|+++++++++.||.+++|
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~   39 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLW   39 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEc
Confidence            3667899999999999999999999999999998

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.57  E-value=0.038  Score=53.98  Aligned_cols=201  Identities=9%  Similarity=0.109  Sum_probs=120.1

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccc---cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM---EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL  188 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h---~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  188 (482)
                      +..++.++.++.|+-.|..+|+.+-.+...........   ...-..+++  .+..++.++.|+.+.-+|.++|+.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            45677777788999999999998766554321100000   000011222  2346778888999999999999998876


Q ss_pred             ecccCCCeEEEEEcc--CCCEEEEEEC------CCeEEEEeCCCCceEEEeecccc------------------------
Q psy8448         189 EKAHSLGVTCIQFSR--DNSQILTASF------DTYVRIHGLKSGKMLKEFRGHSS------------------------  236 (482)
Q Consensus       189 ~~~~~~~v~~i~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~------------------------  236 (482)
                      .......-..+.-+|  .+..++++..      +|.|..+|.++|+.+..+..-..                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            322111001111112  1335555542      68999999999998766532110                        


Q ss_pred             -------ce-eEEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCCceeeeeeccCCCc-------cceeE
Q psy8448         237 -------FV-NDITFTADGHSVLSASSD-----G-----------TVKMWNLKTTECTSTFKSLGASD-------IAVNS  285 (482)
Q Consensus       237 -------~i-~~l~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~  285 (482)
                             .+ ..++++|+..+++.+..+     +           .|.-.|+++|+..-.++... |+       ....-
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~-~D~wD~d~~~~p~l  305 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP-HDEWDYDGVNEMIL  305 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC-CCCccccCCCCcEE
Confidence                   11 134677766777666522     2           57778899999887776432 11       11111


Q ss_pred             EEEcCCCC--CEEEEEeCCCeEEEEEc-CCcEE
Q psy8448         286 IHLLPKNT--EHFVVCNKTNTVVIMNM-QGQIV  315 (482)
Q Consensus       286 i~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~  315 (482)
                      +....+|.  ..++.+..+|.+.+.|. +|+.+
T Consensus       306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            22223553  47889999999999999 67765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4441|consensus

Probab=97.56  E-value=0.013  Score=57.74  Aligned_cols=228  Identities=13%  Similarity=0.082  Sum_probs=122.2

Q ss_pred             cCCCCEEEEEeCC------CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC------CcEEE
Q psy8448         109 SPDGQYLITGSVD------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS------GKVKI  176 (482)
Q Consensus       109 s~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d------g~i~i  176 (482)
                      +..+.+++.|+.+      ..+..||..+++.........       ...-.+++.. ++...++||.|      ..+..
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-------~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~  353 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-------PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVER  353 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-------ccccccEEEE-CCEEEEEccccCCCcccceEEE
Confidence            3346677777766      368889988875444333331       1223344444 45778888888      35778


Q ss_pred             EEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCCce--EEEeeccccceeEEEEcCCCC
Q psy8448         177 WKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSGKM--LKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       177 wd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      ||..+++....-. ...........  -+|...++|+.||     .+-.||.++.+-  +..+.......-...  -+|.
T Consensus       354 YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~  429 (571)
T KOG4441|consen  354 YDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGK  429 (571)
T ss_pred             ecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCE
Confidence            8887776433110 01111111112  2788889999887     477788776542  222221111111222  2677


Q ss_pred             EEEEEeCCC------cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcEEEE
Q psy8448         249 SVLSASSDG------TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN-----TVVIMNMQGQIVRS  317 (482)
Q Consensus       249 ~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~  317 (482)
                      ..++|+.++      .+..||..+.+....-.-  .....-..++... + .++++|+.|+     ++..||........
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M--~~~R~~~g~a~~~-~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM--NTRRSGFGVAVLN-G-KIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCCCCceeecCCc--ccccccceEEEEC-C-EEEEECCccCCCccceEEEEcCCCCceeE
Confidence            777777543      578888887654322210  1111112233332 2 6888888776     37778885554444


Q ss_pred             ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         318 LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      +.........+..+.+  ++...++|+.||.-++=.+
T Consensus       506 v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~v  540 (571)
T KOG4441|consen  506 VAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTV  540 (571)
T ss_pred             cccCccccccccEEEE--CCEEEEEecccCcccccee
Confidence            4433222233323333  4667778888877664333

>smart00320 WD40 WD40 repeats

Probab=97.52  E-value=0.00033  Score=40.35  Aligned_cols=39  Identities=44%  Similarity=0.916  Sum_probs=34.1

Q ss_pred             CceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         225 GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN  263 (482)
Q Consensus       225 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d  263 (482)
                      +++...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345666778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.51  E-value=0.061  Score=49.44  Aligned_cols=233  Identities=13%  Similarity=0.105  Sum_probs=105.5

Q ss_pred             CCCEEEEEe-CCCeEEEEecCCCc----eeeccccccccccccccccEEEEEEcCCCCEEEEEeC------CCcEEEEEc
Q psy8448         111 DGQYLITGS-VDGFIEVWNFTTGK----IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ------SGKVKIWKI  179 (482)
Q Consensus       111 ~~~~l~s~~-~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~  179 (482)
                      +.++|+..+ .++.|+|.|+.+..    +.+.+.......-.+ -.....+..-|+|+.++++-.      -|-+.++|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g-~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTG-LSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH--EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcC-CCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence            457777766 77899999988432    333332211100000 022333444578888888632      256888887


Q ss_pred             CCCeEeEEeeccc--CCCeEEEEEccCCCEEEEEEC--------------------CCeEEEEeCCCCceEEEeeccc--
Q psy8448         180 ATGQCLRKLEKAH--SLGVTCIQFSRDNSQILTASF--------------------DTYVRIHGLKSGKMLKEFRGHS--  235 (482)
Q Consensus       180 ~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~--  235 (482)
                      ++.+.........  ...-..+-|.|..+.+++...                    ..++.+||+.+.+.++++.-..  
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            7777777664322  223456778888788887653                    3589999999999999887432  


Q ss_pred             cceeEEEEcC--CCCEEEE-EeCCCcEEEEEC-CCCc----eeeeeecc--------------CCCccceeEEEEcCCCC
Q psy8448         236 SFVNDITFTA--DGHSVLS-ASSDGTVKMWNL-KTTE----CTSTFKSL--------------GASDIAVNSIHLLPKNT  293 (482)
Q Consensus       236 ~~i~~l~~~~--~~~~l~~-~~~dg~i~i~d~-~~~~----~~~~~~~~--------------~~~~~~v~~i~~~~~~~  293 (482)
                      ..+..+.|..  +..+=++ +.-..+|..|-- +.++    .+..+...              ..-..-|+.|.++.++.
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence            3455677754  4444333 333444544433 3332    11111110              00134578999999996


Q ss_pred             CEEEEEeCCCeEEEEEcCC----cEEEEecCC-c------------ccCcCEEEEEEcCCCCEEEEEe
Q psy8448         294 EHFVVCNKTNTVVIMNMQG----QIVRSLSSG-K------------REGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       294 ~~l~~~~~d~~i~i~d~~~----~~~~~~~~~-~------------~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      .+++++-..|.|+.||++.    +..-++..+ .            .-.+...-+..|-||+.|+..+
T Consensus       325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            6666777899999999942    222222211 0            0012234577788888887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079|consensus

Probab=97.37  E-value=0.013  Score=59.03  Aligned_cols=102  Identities=21%  Similarity=0.328  Sum_probs=72.8

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      .+..++.|+..|.|-..|+...-.. -.....      -..+|++++|+.+|..++.|-.+|.|.+||+..++.++.+ .
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~------v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i-~  169 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP-LHQNER------VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI-T  169 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch-hhcCCc------cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee-e
Confidence            4557888988899998887653111 011111      1579999999999999999999999999999998888877 4


Q ss_pred             ccCCCeEEE---EEccCCCEEEEEECCCeEEEEeC
Q psy8448         191 AHSLGVTCI---QFSRDNSQILTASFDTYVRIHGL  222 (482)
Q Consensus       191 ~~~~~v~~i---~~~~~~~~l~~~~~dg~i~i~d~  222 (482)
                      .+..+.+.+   .+..++..++++...|.  +|.+
T Consensus       170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            555554444   34446667888877776  4443

>KOG2395|consensus

Probab=97.33  E-value=0.0054  Score=56.68  Aligned_cols=137  Identities=15%  Similarity=0.218  Sum_probs=93.4

Q ss_pred             EEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC-------EEEEEeCCCcEEEEECCCCce-eeee-eccC-C
Q psy8448         209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH-------SVLSASSDGTVKMWNLKTTEC-TSTF-KSLG-A  278 (482)
Q Consensus       209 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~-~~~~-~~~~-~  278 (482)
                      ..+.....++-.|++.|+.+.++.-+.. |+-+.+.|+.+       .-+.|-.+..|.-||.+-... .... +... .
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            3455556788899999999999987666 77788888543       124566678899999884322 1111 1000 1


Q ss_pred             CccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         279 SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       279 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ......|++-..+  .++++|+.+|.|++||..+...++...+.  ..+|..+..+.+|++|++.+..-.+.
T Consensus       429 ~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdri~~~AKTAlPgL--G~~I~hVdvtadGKwil~Tc~tyLlL  496 (644)
T KOG2395|consen  429 TKNNFSCFATTES--GYIVVGSLKGDIRLYDRIGRRAKTALPGL--GDAIKHVDVTADGKWILATCKTYLLL  496 (644)
T ss_pred             cccccceeeecCC--ceEEEeecCCcEEeehhhhhhhhhccccc--CCceeeEEeeccCcEEEEecccEEEE
Confidence            2344556665555  48999999999999998655444443332  67899999999999998776654444

>PHA02713 hypothetical protein; Provisional

Probab=97.33  E-value=0.031  Score=55.18  Aligned_cols=207  Identities=11%  Similarity=0.031  Sum_probs=100.5

Q ss_pred             eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCeEeEEeeccc-CCC
Q psy8448         123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS------GKVKIWKIATGQCLRKLEKAH-SLG  195 (482)
Q Consensus       123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~-~~~  195 (482)
                      .+..||..+++.......+..      ... .+++. -++...+.||.+      ..+..||..++.....-.... ...
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~------r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~  344 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNH------IIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR  344 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCcc------ccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc
Confidence            577888887764332222110      011 12222 256677777753      347788987765322110001 111


Q ss_pred             eEEEEEccCCCEEEEEECCC-----eEEEEeCCCCceEE--EeeccccceeEEEEcCCCCEEEEEeCCC-----------
Q psy8448         196 VTCIQFSRDNSQILTASFDT-----YVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDG-----------  257 (482)
Q Consensus       196 v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~dg-----------  257 (482)
                      ...+  .-+++..+.|+.++     .+..||..+.+-..  .+.........+.  -++...+.|+.++           
T Consensus       345 ~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~  420 (557)
T PHA02713        345 FSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMN  420 (557)
T ss_pred             eeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccc
Confidence            2222  22677778887654     48889987654221  2221111111222  2567777776542           


Q ss_pred             ------------cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC------CeEEEEEcCC-cEEEEe
Q psy8448         258 ------------TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT------NTVVIMNMQG-QIVRSL  318 (482)
Q Consensus       258 ------------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------~~i~i~d~~~-~~~~~~  318 (482)
                                  .+..||.++.+-... ......... .+++. -++ .+++.|+.+      ..+..||... ......
T Consensus       421 ~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~-~~~~~-~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~  496 (557)
T PHA02713        421 SIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIR-PGVVS-HKD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI  496 (557)
T ss_pred             cccccccccccceEEEECCCCCeEeec-CCCCccccc-CcEEE-ECC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence                        477788877643221 111011111 12222 223 677777654      2467788854 333333


Q ss_pred             cCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         319 SSGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       319 ~~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      ............+++  +|+..++||.+|
T Consensus       497 ~~m~~~r~~~~~~~~--~~~iyv~Gg~~~  523 (557)
T PHA02713        497 TTTESRLSALHTILH--DNTIMMLHCYES  523 (557)
T ss_pred             cccCcccccceeEEE--CCEEEEEeeecc
Confidence            322211222223333  677888899888

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.30  E-value=0.11  Score=46.20  Aligned_cols=237  Identities=16%  Similarity=0.168  Sum_probs=107.0

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCC-CceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .-...+.+|.|..+..-+++|. .+.|  +...+ |+.=..........   -.-...++.|..+ ..++ ++..+. .+
T Consensus        14 ~t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~---~~~~l~~I~f~~~-~g~i-vG~~g~-ll   84 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNP---FDYHLNSISFDGN-EGWI-VGEPGL-LL   84 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S--------EEEEEEEETT-EEEE-EEETTE-EE
T ss_pred             CCCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCcc---ceeeEEEEEecCC-ceEE-EcCCce-EE
Confidence            4456899999996666667665 4543  33333 32211111111000   0123667777643 3344 444553 33


Q ss_pred             EEcCCCeEeEEeec--ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE-EeeccccceeEEEEcCCCCEEEEE
Q psy8448         177 WKIATGQCLRKLEK--AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK-EFRGHSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       177 wd~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~  253 (482)
                      .-...++.-..+..  .-......+....++ ....++..|.|+.= .+.++.-. ......+.+..+.-+++|++++++
T Consensus        85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs  162 (302)
T PF14870_consen   85 HTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVS  162 (302)
T ss_dssp             EESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEE
T ss_pred             EecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEE
Confidence            33344443333311  122233344444444 34444555655432 23444322 233445678888889999988887


Q ss_pred             eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEE-ecCCcccCcCEEE
Q psy8448         254 SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRS-LSSGKREGGDFLC  330 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~-~~~~~~~~~~v~~  330 (482)
                      .......-||--...-...-+   .....|..+.|.|++ .+.+ ....|.|++=+.  ....... +.........+..
T Consensus       163 ~~G~~~~s~~~G~~~w~~~~r---~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld  237 (302)
T PF14870_consen  163 SRGNFYSSWDPGQTTWQPHNR---NSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILD  237 (302)
T ss_dssp             TTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEE
T ss_pred             CcccEEEEecCCCccceEEcc---CccceehhceecCCC-CEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEE
Confidence            666556677754322111111   346789999999996 4544 448899988873  2222222 1111122445889


Q ss_pred             EEEcCCCCEEEEEeCCcEEE
Q psy8448         331 CTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ++|.+++...++|+....++
T Consensus       238 ~a~~~~~~~wa~gg~G~l~~  257 (302)
T PF14870_consen  238 LAYRPPNEIWAVGGSGTLLV  257 (302)
T ss_dssp             EEESSSS-EEEEESTT-EEE
T ss_pred             EEecCCCCEEEEeCCccEEE
Confidence            99999887777665544433

>KOG2395|consensus

Probab=97.26  E-value=0.0049  Score=56.94  Aligned_cols=144  Identities=13%  Similarity=0.202  Sum_probs=98.2

Q ss_pred             CCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC-------EEEEEeCCCcEEEEEcCCC
Q psy8448         111 DGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE-------MLASGSQSGKVKIWKIATG  182 (482)
Q Consensus       111 ~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-------~l~~~~~dg~i~iwd~~~~  182 (482)
                      +.++|+ ++.....++-.|++.|+.+.....+         ..|+-+.+.|+.+       .-+.|-.|..|.-||.+-.
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~---------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~  414 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFE---------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ  414 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeecc---------CCcceeeccCCcchhcccccccEEeecCCceEEeccccc
Confidence            344443 4555567888999999998887765         3477888888643       2244557788999998633


Q ss_pred             eE-eEEeeccc----CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         183 QC-LRKLEKAH----SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       183 ~~-~~~~~~~~----~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      .. .......|    .....|.+-..+| +|++|+.+|.|++||--.......+.+...+|..+..+.+|++|+..+ +.
T Consensus       415 ~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~t  492 (644)
T KOG2395|consen  415 GKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KT  492 (644)
T ss_pred             CcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-cc
Confidence            22 11111222    2345666665555 899999999999999633334455778889999999999999888665 45


Q ss_pred             cEEEEECC
Q psy8448         258 TVKMWNLK  265 (482)
Q Consensus       258 ~i~i~d~~  265 (482)
                      .+.+.++.
T Consensus       493 yLlLi~t~  500 (644)
T KOG2395|consen  493 YLLLIDTL  500 (644)
T ss_pred             EEEEEEEe
Confidence            67777654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.24  E-value=0.24  Score=50.47  Aligned_cols=205  Identities=9%  Similarity=0.109  Sum_probs=122.5

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeecccccccccc-ccccccEEEEEEcC----------------CCCEEEEEeCCCcE
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNF-MLMEEAVMSLAYSR----------------DSEMLASGSQSGKV  174 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~h~~~i~~l~~~~----------------~~~~l~~~~~dg~i  174 (482)
                      +..|..++.++.|.-.|..+|+.+-++........ ..| .....+++..                .+..++.++.|+.+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            55777788889999999999998776655432110 001 0112233321                34578889999999


Q ss_pred             EEEEcCCCeEeEEeecccCCCe-------------EEEEEcc--CCCEEEEEEC----------CCeEEEEeCCCCceEE
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGV-------------TCIQFSR--DNSQILTASF----------DTYVRIHGLKSGKMLK  229 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v-------------~~i~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~  229 (482)
                      .-.|.++|+....+..  ...+             ..+.-.|  .+..+++|+.          +|.|+-+|+++|+.+.
T Consensus       273 iALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       273 IALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            9999999998877631  1111             0111112  2345666643          6889999999999887


Q ss_pred             Eeecc---------cc--------ce-eEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceeeee
Q psy8448         230 EFRGH---------SS--------FV-NDITFTADGHSVLSAS------------------SDGTVKMWNLKTTECTSTF  273 (482)
Q Consensus       230 ~~~~~---------~~--------~i-~~l~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~  273 (482)
                      .+..-         .+        .+ ..++++++...++.+.                  ..+.|.-.|.++|+..-.+
T Consensus       351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~  430 (764)
T TIGR03074       351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF  430 (764)
T ss_pred             EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence            76420         00        01 2345555544444322                  1245777788888887777


Q ss_pred             eccCCCc-------cceeEEEEcC-CC--CCEEEEEeCCCeEEEEEc-CCcEEEEecC
Q psy8448         274 KSLGASD-------IAVNSIHLLP-KN--TEHFVVCNKTNTVVIMNM-QGQIVRSLSS  320 (482)
Q Consensus       274 ~~~~~~~-------~~v~~i~~~~-~~--~~~l~~~~~d~~i~i~d~-~~~~~~~~~~  320 (482)
                      +... |+       ....=+.+.. ++  ...++.++.+|.+.++|. +|+.+.....
T Consensus       431 Q~~~-hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       431 QTVH-HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             cccC-CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            6321 11       0111112222 33  137889999999999999 6887766543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.24  E-value=0.28  Score=49.99  Aligned_cols=112  Identities=16%  Similarity=0.226  Sum_probs=75.1

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCC-------eEEEEEcc----------------CCCEEEEEECCCeEE
Q psy8448         162 SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLG-------VTCIQFSR----------------DNSQILTASFDTYVR  218 (482)
Q Consensus       162 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------v~~i~~~~----------------~~~~l~~~~~dg~i~  218 (482)
                      +..++.++.++.|.-.|..+|+.+.++.......       .+.+++..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            5678888889999999999999988874322110       12233321                334788899999999


Q ss_pred             EEeCCCCceEEEeecccccee-------------EEEEcC--CCCEEEEEeC----------CCcEEEEECCCCceeeee
Q psy8448         219 IHGLKSGKMLKEFRGHSSFVN-------------DITFTA--DGHSVLSASS----------DGTVKMWNLKTTECTSTF  273 (482)
Q Consensus       219 i~d~~~~~~~~~~~~~~~~i~-------------~l~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~  273 (482)
                      -.|.++|+.+..+.. .+.+.             .+.-.|  .+..+++|+.          +|.|+-+|.++|+.+-.+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999999877642 11110             111112  2345666642          688999999999988776


Q ss_pred             e
Q psy8448         274 K  274 (482)
Q Consensus       274 ~  274 (482)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            5

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.23  E-value=0.1  Score=46.50  Aligned_cols=139  Identities=12%  Similarity=0.135  Sum_probs=87.5

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe---------
Q psy8448         161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF---------  231 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------  231 (482)
                      .++.|+.|+.+| +.++++........+.  +...|..+...|+-+.+++-+ |+.+.++++.........         
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            577899999998 8999984333333331  334499999999777766665 699999998765443311         


Q ss_pred             -----eccccceeEEE--EcCCCCEEEEEeCCCcEEEEECCCC-----ceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448         232 -----RGHSSFVNDIT--FTADGHSVLSASSDGTVKMWNLKTT-----ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       232 -----~~~~~~i~~l~--~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                           ......+...+  -...+...++......|.+|.....     +..+.+    .-...+..++|.+   ..++.+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~----~lp~~~~~i~~~~---~~i~v~  154 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI----SLPDPPSSIAFLG---NKICVG  154 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE----EcCCCcEEEEEeC---CEEEEE
Confidence                 11223344444  1123444444445558998887653     233444    3346788999984   567777


Q ss_pred             eCCCeEEEEEcC
Q psy8448         300 NKTNTVVIMNMQ  311 (482)
Q Consensus       300 ~~d~~i~i~d~~  311 (482)
                      ..+ ...+.|++
T Consensus       155 ~~~-~f~~idl~  165 (275)
T PF00780_consen  155 TSK-GFYLIDLN  165 (275)
T ss_pred             eCC-ceEEEecC
Confidence            654 47788885

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2079|consensus

Probab=97.23  E-value=0.0015  Score=65.38  Aligned_cols=102  Identities=21%  Similarity=0.306  Sum_probs=77.2

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeE
Q psy8448         161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND  240 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  240 (482)
                      .+..++.|+..|.+...|+..+-........-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            45678999999999999986542211111234678999999999999999999999999999999999888877666554


Q ss_pred             E---EEcCCCCEEEEEeCCCcEEEEEC
Q psy8448         241 I---TFTADGHSVLSASSDGTVKMWNL  264 (482)
Q Consensus       241 l---~~~~~~~~l~~~~~dg~i~i~d~  264 (482)
                      +   .+..++..++++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            4   44456677888887775  5553

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.22  E-value=0.12  Score=44.60  Aligned_cols=188  Identities=12%  Similarity=0.150  Sum_probs=117.5

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSG--KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML  228 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  228 (482)
                      .-...+.|..++.++-+.+.-|  .|+.+|+.+++...........---.++.. +++.....=.++...+||..+.+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence            4466888877888888887665  799999999988776643333333344444 3344445566889999999999998


Q ss_pred             EEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCc---cceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         229 KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASD---IAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       229 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                      .++.- .+.=..++  .++..|+.......+.++|..+.+....+.... ..   ..++.+.+. +| .+++=.-....|
T Consensus       124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i-~G-~IyANVW~td~I  197 (264)
T PF05096_consen  124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYI-NG-KIYANVWQTDRI  197 (264)
T ss_dssp             EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEE-TT-EEEEEETTSSEE
T ss_pred             EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEE-cC-EEEEEeCCCCeE
Confidence            88863 34556777  456677777778889999999887777665431 22   235556665 34 455555566777


Q ss_pred             EEEEc-CCcEEEEecCC------------cccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         306 VIMNM-QGQIVRSLSSG------------KREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       306 ~i~d~-~~~~~~~~~~~------------~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      ...|. +|+....+.-.            .....-.+.+|++|..+.++..+.
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            77888 67766655311            011344678999988777665554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.20  E-value=0.17  Score=46.29  Aligned_cols=243  Identities=15%  Similarity=0.175  Sum_probs=117.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---CCEEEEEeC-C------
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGSQ-S------  171 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~~-d------  171 (482)
                      ..+.|+|.|||+++++ ...|.|++++ .++.....+... .............++++|+   ..+|..... .      
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~-~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADL-PEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE--TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceeccc-ccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            4578999999987775 5599999999 444431111111 1122233568899999994   334444332 1      


Q ss_pred             --CcEEEEEcCCC-------eEeE-Eeec--ccCCCeEEEEEccCCCEEEEEECC-------------CeEEEEeCCCCc
Q psy8448         172 --GKVKIWKIATG-------QCLR-KLEK--AHSLGVTCIQFSRDNSQILTASFD-------------TYVRIHGLKSGK  226 (482)
Q Consensus       172 --g~i~iwd~~~~-------~~~~-~~~~--~~~~~v~~i~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~  226 (482)
                        ..|.-|....+       +.+. .+..  ...-....|+|.|+|.+.++.+..             |.|.-.+.. ++
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~  158 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GS  158 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SS
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-Cc
Confidence              23444444333       1111 1111  122345679999999666655433             233333432 11


Q ss_pred             e-------------EEEe-eccccceeEEEEcCC-CCEEEEE-eCCCcEEEEECCCCcee--------------------
Q psy8448         227 M-------------LKEF-RGHSSFVNDITFTAD-GHSVLSA-SSDGTVKMWNLKTTECT--------------------  270 (482)
Q Consensus       227 ~-------------~~~~-~~~~~~i~~l~~~~~-~~~l~~~-~~dg~i~i~d~~~~~~~--------------------  270 (482)
                      .             ...+ .++.. ...++|+|. ++++++= +.++.=.|.-+..+...                    
T Consensus       159 ~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~  237 (331)
T PF07995_consen  159 IPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP  237 (331)
T ss_dssp             B-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred             CCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence            0             0011 12222 468999998 5544432 22222222222222110                    


Q ss_pred             ------eeeeccCCCccceeEEEEcCCC------CCEEEEEeCCCeEEEEEcC-CcEEEEecC-CcccCcCEEEEEEcCC
Q psy8448         271 ------STFKSLGASDIAVNSIHLLPKN------TEHFVVCNKTNTVVIMNMQ-GQIVRSLSS-GKREGGDFLCCTTSPR  336 (482)
Q Consensus       271 ------~~~~~~~~~~~~v~~i~~~~~~------~~~l~~~~~d~~i~i~d~~-~~~~~~~~~-~~~~~~~v~~~~~~~~  336 (482)
                            ...... .+...+..+.|....      ..+|++.-..+.|....++ +..+..... ......++..+++.||
T Consensus       238 ~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  238 SCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD  316 (331)
T ss_dssp             S-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred             CCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence                  000000 222445566665322      1455555556778777773 332222211 1122447999999999


Q ss_pred             CCEEEEEeCCcEEE
Q psy8448         337 GEWIYCVGEDMVLV  350 (482)
Q Consensus       337 g~~l~~~~~dg~i~  350 (482)
                      |.+.++-+.+|.|+
T Consensus       317 G~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  317 GALYVSDDSDGKIY  330 (331)
T ss_dssp             SEEEEEE-TTTTEE
T ss_pred             CeEEEEECCCCeEe
Confidence            99988888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.13  E-value=0.17  Score=45.06  Aligned_cols=234  Identities=14%  Similarity=0.215  Sum_probs=111.0

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC-
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA-  180 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-  180 (482)
                      ..+++.|..+ ..+++|. .+ +.+...+.|+.-..+.....  +   ......+....++. ....+..|.|  |... 
T Consensus        63 ~l~~I~f~~~-~g~ivG~-~g-~ll~T~DgG~tW~~v~l~~~--l---pgs~~~i~~l~~~~-~~l~~~~G~i--y~T~D  131 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVGE-PG-LLLHTTDGGKTWERVPLSSK--L---PGSPFGITALGDGS-AELAGDRGAI--YRTTD  131 (302)
T ss_dssp             EEEEEEEETT-EEEEEEE-TT-EEEEESSTTSS-EE----TT------SS-EEEEEEEETTE-EEEEETT--E--EEESS
T ss_pred             eEEEEEecCC-ceEEEcC-Cc-eEEEecCCCCCcEEeecCCC--C---CCCeeEEEEcCCCc-EEEEcCCCcE--EEeCC
Confidence            4667788653 4455553 45 45555555554333322110  0   12233344334443 3334445543  3333 


Q ss_pred             CCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEE
Q psy8448         181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVK  260 (482)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~  260 (482)
                      .++.-..+.......+..+.-+++|.+++++.......-||.-...-...-+.....|.+|.|.|++.+.+. ...|.|+
T Consensus       132 gG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~  210 (302)
T PF14870_consen  132 GGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQ  210 (302)
T ss_dssp             TTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEE
T ss_pred             CCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEE
Confidence            333333333445577888889999998888876666667875432222222335678999999999876554 4888888


Q ss_pred             EEEC-CCCcee-eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCC
Q psy8448         261 MWNL-KTTECT-STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGE  338 (482)
Q Consensus       261 i~d~-~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~  338 (482)
                      .=+. ...+.- ..+.........+..++|.+++ ...++ +..|.+..=.-.|+.-+.......-...++.+.|.++ +
T Consensus       211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~-gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~-~  287 (302)
T PF14870_consen  211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAV-GGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNP-D  287 (302)
T ss_dssp             EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEE-ESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEET-T
T ss_pred             EccCCCCccccccccCCcccCceeeEEEEecCCC-CEEEE-eCCccEEEeCCCCccceECccccCCCCceEEEEEcCC-C
Confidence            8772 222111 1111111334558899999886 55554 4455554433356666666543333556788888755 4


Q ss_pred             EEEEEeCCcEEE
Q psy8448         339 WIYCVGEDMVLV  350 (482)
Q Consensus       339 ~l~~~~~dg~i~  350 (482)
                      .-++.+.+|.|.
T Consensus       288 ~gf~lG~~G~ll  299 (302)
T PF14870_consen  288 KGFVLGQDGVLL  299 (302)
T ss_dssp             EEEEE-STTEEE
T ss_pred             ceEEECCCcEEE
Confidence            455567788776

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.06  E-value=0.0025  Score=38.52  Aligned_cols=33  Identities=24%  Similarity=0.481  Sum_probs=29.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGK  133 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~  133 (482)
                      ...|.+++|+|..++||.|+.+|.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            457999999999999999999999999998 443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.02  E-value=0.17  Score=44.28  Aligned_cols=149  Identities=14%  Similarity=0.094  Sum_probs=89.5

Q ss_pred             CeEEEEEccCCCEEEEEE---CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcee
Q psy8448         195 GVTCIQFSRDNSQILTAS---FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN-LKTTECT  270 (482)
Q Consensus       195 ~v~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~  270 (482)
                      .+.+.+++++++.++...   ....++++..  +....... ....+..-.|++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999887665   3335666554  33233222 233678889999987777666666667664 3333322


Q ss_pred             e-eeeccCCCccceeEEEEcCCCCCEEEEEe--CCCeEEEEEc----CCcEEEEe----cCCcccCcCEEEEEEcCCCCE
Q psy8448         271 S-TFKSLGASDIAVNSIHLLPKNTEHFVVCN--KTNTVVIMNM----QGQIVRSL----SSGKREGGDFLCCTTSPRGEW  339 (482)
Q Consensus       271 ~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~i~d~----~~~~~~~~----~~~~~~~~~v~~~~~~~~g~~  339 (482)
                      . ..... .....|..+.++|+|.++.++..  .++.|.+--+    .+ ....+    .........+..++|.+++.+
T Consensus       102 ~~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g-~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  102 PVEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG-VPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             eEEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-CcceeccceEecccccCcceeeeecCCCEE
Confidence            2 12111 11128999999999965555542  3567777655    23 01111    111112467889999999988


Q ss_pred             EEEEeCCcE
Q psy8448         340 IYCVGEDMV  348 (482)
Q Consensus       340 l~~~~~dg~  348 (482)
                      ++.+...+.
T Consensus       180 ~V~~~~~~~  188 (253)
T PF10647_consen  180 VVLGRSAGG  188 (253)
T ss_pred             EEEeCCCCC
Confidence            887665544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4441|consensus

Probab=97.02  E-value=0.07  Score=52.61  Aligned_cols=178  Identities=11%  Similarity=0.084  Sum_probs=97.0

Q ss_pred             CCCEEEEEeCC------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-C-----eEEEEeCCCCceE
Q psy8448         161 DSEMLASGSQS------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-T-----YVRIHGLKSGKML  228 (482)
Q Consensus       161 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g-----~i~i~d~~~~~~~  228 (482)
                      .+..++.||.+      ..+..+|..+++............-.+++.. ++...++|+.| |     .+..||.+..+-.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            45567777766      3678889887754433322333334444444 56778889888 3     6888898877632


Q ss_pred             E--EeeccccceeEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         229 K--EFRGHSSFVNDITFTADGHSVLSASSDGT-----VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       229 ~--~~~~~~~~i~~l~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      .  .+....... +++. -+|...++|+.||.     +..||.++.+....-    .............-++.++++|+.
T Consensus       363 ~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va----~m~~~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  363 PVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA----PMLTRRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             ccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccC----CCCcceeeeEEEEECCEEEEEcCc
Confidence            2  122112211 1221 26778888888864     778887765432221    111122333333333378888875


Q ss_pred             CC------eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         302 TN------TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       302 d~------~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      ++      ++..||...+...................+  ++...+.||.|+
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~  486 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDG  486 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccC
Confidence            53      567888854443333332211222222222  567777888887

>KOG2444|consensus

Probab=96.97  E-value=0.0026  Score=52.29  Aligned_cols=107  Identities=19%  Similarity=0.189  Sum_probs=69.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEE-ccCCCEEEEEECCCeEEEEeCCCCceEEEeeccc-cce
Q psy8448         161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF-SRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS-SFV  238 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i  238 (482)
                      -+..+++|+.+|.|.+|+.................|.++.- -.++.+..+++.||.|+.|++.-++.+.....|. .++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            45679999999999999876222111111112233333322 2355678899999999999999888877776676 455


Q ss_pred             eEEEEcCCCCEEEEE--eCCCcEEEEECCCC
Q psy8448         239 NDITFTADGHSVLSA--SSDGTVKMWNLKTT  267 (482)
Q Consensus       239 ~~l~~~~~~~~l~~~--~~dg~i~i~d~~~~  267 (482)
                      ..+..+..++.+..+  +.|..++.|++...
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            555555555666666  66667777776543

>PHA02713 hypothetical protein; Provisional

Probab=96.96  E-value=0.037  Score=54.59  Aligned_cols=186  Identities=10%  Similarity=0.009  Sum_probs=93.8

Q ss_pred             CCCEEEEEeCC------CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEEc
Q psy8448         111 DGQYLITGSVD------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG-----KVKIWKI  179 (482)
Q Consensus       111 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg-----~i~iwd~  179 (482)
                      ++...+.||.+      ..+..||..++.-.........      ........  -+++..+.||.++     .+..||.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~------R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp  374 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN------RCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTM  374 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch------hhceeEEE--ECCEEEEECCcCCCCCCceEEEEEC
Confidence            56677777753      3577888877653322111110      11222222  2577777887654     4788998


Q ss_pred             CCCeEeEEeecccC-CCeEEEEEccCCCEEEEEECCC-----------------------eEEEEeCCCCceE--EEeec
Q psy8448         180 ATGQCLRKLEKAHS-LGVTCIQFSRDNSQILTASFDT-----------------------YVRIHGLKSGKML--KEFRG  233 (482)
Q Consensus       180 ~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~--~~~~~  233 (482)
                      .+++....-..... .....++  -++...+.|+.++                       .+..||.++.+-.  ..+..
T Consensus       375 ~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~  452 (557)
T PHA02713        375 GDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT  452 (557)
T ss_pred             CCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence            77653321100111 1111222  2677777777542                       4777888765432  22211


Q ss_pred             cccceeEEEEcCCCCEEEEEeCC------CcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC--e
Q psy8448         234 HSSFVNDITFTADGHSVLSASSD------GTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN--T  304 (482)
Q Consensus       234 ~~~~i~~l~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~  304 (482)
                      ..... +++ .-+++..+.|+.+      ..+..||.++ .+-... .......... +++.. ++ .++++|+.++  .
T Consensus       453 ~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~-~~m~~~r~~~-~~~~~-~~-~iyv~Gg~~~~~~  526 (557)
T PHA02713        453 GTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI-TTTESRLSAL-HTILH-DN-TIMMLHCYESYML  526 (557)
T ss_pred             ccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc-cccCcccccc-eeEEE-CC-EEEEEeeecceee
Confidence            11111 222 2256666667653      2467899887 443221 1111222222 22222 33 7888998887  6


Q ss_pred             EEEEEcCC
Q psy8448         305 VVIMNMQG  312 (482)
Q Consensus       305 i~i~d~~~  312 (482)
                      +..||...
T Consensus       527 ~e~yd~~~  534 (557)
T PHA02713        527 QDTFNVYT  534 (557)
T ss_pred             hhhcCccc
Confidence            77777743

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.86  E-value=0.21  Score=47.52  Aligned_cols=149  Identities=13%  Similarity=0.218  Sum_probs=85.4

Q ss_pred             CeEEEEEccCCCEEEEEE---CCCeEEEEeCCCCceEEEeeccccceeEEEEcCC----CCEEEEEeCCCcEEEEECCC-
Q psy8448         195 GVTCIQFSRDNSQILTAS---FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD----GHSVLSASSDGTVKMWNLKT-  266 (482)
Q Consensus       195 ~v~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~----~~~l~~~~~dg~i~i~d~~~-  266 (482)
                      ++..++|. ||+.++...   .+|.+++=|   .+.+..|    ..|..+.|.|-    ...|++......|.+|.+-. 
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            57888997 565554332   234333322   1223333    35889999984    34577777788999999752 


Q ss_pred             ----CceeeeeeccCCCccc--eeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCcccCcCEEEEEEcCCCC
Q psy8448         267 ----TECTSTFKSLGASDIA--VNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLCCTTSPRGE  338 (482)
Q Consensus       267 ----~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~g~  338 (482)
                          .+....-........+  -....|+|.. ..+++-+....-.+++.  ++..++.-...   .+.|.|.+|.+||+
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG~  168 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDGQ  168 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcCC
Confidence                2222111110011122  2457799987 66666555555456666  33333322222   68899999999999


Q ss_pred             EEEEE-eCCcEEEEEeeh
Q psy8448         339 WIYCV-GEDMVLVVRLIQ  355 (482)
Q Consensus       339 ~l~~~-~~dg~i~iw~~~  355 (482)
                      .|+++ +..=.-+|||-.
T Consensus       169 RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEEeCCeEEEEEecCc
Confidence            88754 333445666544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.81  E-value=0.42  Score=44.18  Aligned_cols=198  Identities=11%  Similarity=0.094  Sum_probs=97.4

Q ss_pred             CCCEEEEEe-CCCcEEEEEcCC----CeEeEEeec--ccC----CCeEEEEEccCCCEEEEEE--C----CCeEEEEeCC
Q psy8448         161 DSEMLASGS-QSGKVKIWKIAT----GQCLRKLEK--AHS----LGVTCIQFSRDNSQILTAS--F----DTYVRIHGLK  223 (482)
Q Consensus       161 ~~~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~--~~~----~~v~~i~~~~~~~~l~~~~--~----dg~i~i~d~~  223 (482)
                      +.++|+..+ ..+.|.|+|+.+    .+..+.++.  -+.    ..-..+..-|+|..++++-  .    -|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777776 678999999873    333444421  011    1233445557888888753  2    2478889988


Q ss_pred             CCceEEEeeccc---cceeEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCceeeeeeccCCCc
Q psy8448         224 SGKMLKEFRGHS---SFVNDITFTADGHSVLSASS--------------------DGTVKMWNLKTTECTSTFKSLGASD  280 (482)
Q Consensus       224 ~~~~~~~~~~~~---~~i~~l~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~~~  280 (482)
                      +.+.........   ..-..+-|.|..+.+++..-                    ..++.+||+.+.+.++++..- ...
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg-~~g  244 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG-EEG  244 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES--TTE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC-CCC
Confidence            887776665422   23456778888887777532                    357999999999999888642 122


Q ss_pred             cceeEEEEcC--CCCCEEEEEeCCCeEEEEEc--CCc----EEEEecCCcc--------------cCcCEEEEEEcCCCC
Q psy8448         281 IAVNSIHLLP--KNTEHFVVCNKTNTVVIMNM--QGQ----IVRSLSSGKR--------------EGGDFLCCTTSPRGE  338 (482)
Q Consensus       281 ~~v~~i~~~~--~~~~~l~~~~~d~~i~i~d~--~~~----~~~~~~~~~~--------------~~~~v~~~~~~~~g~  338 (482)
                      .....|.|..  +...-|+.+.-..+|..|-.  .+.    .+..+.....              -..-++.+.+|.|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence            3455666654  34334555555555555544  222    2222221100              023478899999999


Q ss_pred             EEEEEeC-CcEEEEEeehhhhh
Q psy8448         339 WIYCVGE-DMVLVVRLIQQYLK  359 (482)
Q Consensus       339 ~l~~~~~-dg~i~iw~~~~~~~  359 (482)
                      +|+..+. +|.++.||+.+...
T Consensus       325 fLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             EEEEEETTTTEEEEEE-SSTTS
T ss_pred             EEEEEcccCCcEEEEecCCCCC
Confidence            9997775 89999998875443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.79  E-value=0.0051  Score=37.18  Aligned_cols=34  Identities=18%  Similarity=0.439  Sum_probs=29.9

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC  184 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~  184 (482)
                      ...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            357999999999999999999999999998 4443

>KOG3630|consensus

Probab=96.79  E-value=0.025  Score=57.39  Aligned_cols=146  Identities=12%  Similarity=0.072  Sum_probs=96.9

Q ss_pred             cCCCeEEEEEccCCCEEEEE--ECCCeEEEEeCCCCceEE-----Ee------eccccceeEEEEcCCCC-EEEEEeCCC
Q psy8448         192 HSLGVTCIQFSRDNSQILTA--SFDTYVRIHGLKSGKMLK-----EF------RGHSSFVNDITFTADGH-SVLSASSDG  257 (482)
Q Consensus       192 ~~~~v~~i~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~-----~~------~~~~~~i~~l~~~~~~~-~l~~~~~dg  257 (482)
                      ...++..+...+|+...++.  +.+-.|..||+++...-.     -+      ........++.|+|.-. ..++...|+
T Consensus        99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl  178 (1405)
T KOG3630|consen   99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL  178 (1405)
T ss_pred             ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence            34456667777776554433  334489999997643211     11      11233456888888432 345566788


Q ss_pred             cEEEEECCCCce-eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCccc-CcCEEEEEEcC
Q psy8448         258 TVKMWNLKTTEC-TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE-GGDFLCCTTSP  335 (482)
Q Consensus       258 ~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~  335 (482)
                      .|++..+..... ...+    ......++++|+|.| ..+++|-..|++.-|....+....+...... ...|.+++|-.
T Consensus       179 sl~V~~~~~~~~~v~s~----p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  179 SLRVKSTKQLAQNVTSF----PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             chhhhhhhhhhhhhccc----CcccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEec
Confidence            888887654322 2222    345678999999999 8999999999999998877766666544322 47899999988


Q ss_pred             CCCEEEE
Q psy8448         336 RGEWIYC  342 (482)
Q Consensus       336 ~g~~l~~  342 (482)
                      ...++++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            8777774

>PHA03098 kelch-like protein; Provisional

Probab=96.76  E-value=0.19  Score=49.81  Aligned_cols=194  Identities=13%  Similarity=0.140  Sum_probs=94.3

Q ss_pred             CCCEEEEEeCCC------eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEEc
Q psy8448         111 DGQYLITGSVDG------FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIWKI  179 (482)
Q Consensus       111 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~  179 (482)
                      ++..++.|+.++      .+..||..+.+....-.....      ......+.+  ++..++.||.+     ..+..||.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~------R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~  365 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP------RKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKP  365 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc------cccceEEEE--CCEEEEEeCCCCCEecceEEEEcC
Confidence            456667776542      577888887765332221110      112222222  56777778765     35778888


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC------CeEEEEeCCCCceEE--EeeccccceeEEEEcCCCCEEE
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD------TYVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      .+++....-.......-.+++ .-++...+.|+.+      ..+..||+.+.+-..  .+...... .++.. .++..++
T Consensus       366 ~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv  442 (534)
T PHA03098        366 GESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYV  442 (534)
T ss_pred             CCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEE
Confidence            766533211111111111222 2256666777632      468889987654321  11111111 12222 2556666


Q ss_pred             EEeCC--------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEe
Q psy8448         252 SASSD--------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSL  318 (482)
Q Consensus       252 ~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~  318 (482)
                      .|+.+        ..+.+||..+.+-... ............+.+  ++ .+++.|+.+     +.+.+||........+
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  518 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNKWTEL-SSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNTWTLF  518 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCceeeC-CCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence            66542        2388899887654322 111111111112222  33 677777654     4678888865554444


Q ss_pred             c
Q psy8448         319 S  319 (482)
Q Consensus       319 ~  319 (482)
                      .
T Consensus       519 ~  519 (534)
T PHA03098        519 C  519 (534)
T ss_pred             C
Confidence            4

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.64  E-value=0.08  Score=51.82  Aligned_cols=112  Identities=14%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEc--cCCCEEEEEECCCeEEEEeCC------
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS--RDNSQILTASFDTYVRIHGLK------  223 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~dg~i~i~d~~------  223 (482)
                      .+.-+.-+.-++..++-+....+.|||.+.+.....-.......|.++.|.  |+++.+++.+..+.|.+|.-.      
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            344444444444444444455899999988875444322457789999996  488899988889999998642      


Q ss_pred             ---CCceEEEe--eccc-cceeEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy8448         224 ---SGKMLKEF--RGHS-SFVNDITFTADGHSVLSASSDGTVKMWNLK  265 (482)
Q Consensus       224 ---~~~~~~~~--~~~~-~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~  265 (482)
                         +...+..+  ..++ .+|.+..|.++|..++.++  +.+.|+|-.
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence               11233332  3344 6799999999987555443  468888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3630|consensus

Probab=96.58  E-value=0.035  Score=56.42  Aligned_cols=146  Identities=13%  Similarity=0.043  Sum_probs=92.3

Q ss_pred             ccEEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCeEeE-----Ee-----ecccCCCeEEEEEccCC-CEEEEEECCCeE
Q psy8448         151 EAVMSLAYSRDSEMLASG--SQSGKVKIWKIATGQCLR-----KL-----EKAHSLGVTCIQFSRDN-SQILTASFDTYV  217 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~-----~~-----~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i  217 (482)
                      -++..+...+|+...++.  +.+-.|..||+++-....     -+     ......-..++.|+|.- ...++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            456677777776654443  344478899986532211     01     01223346788898853 345677778999


Q ss_pred             EEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCC-CccceeEEEEcCCCCCEE
Q psy8448         218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA-SDIAVNSIHLLPKNTEHF  296 (482)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l  296 (482)
                      ++..+........--......++++|+|.|..++.|-..|++.-|... ++....+..... ....|.+|+|.... .++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~-efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ-EFL  258 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce-eEE
Confidence            888765433222222245678999999999999999999999988754 333333333222 24789999998875 444


Q ss_pred             EE
Q psy8448         297 VV  298 (482)
Q Consensus       297 ~~  298 (482)
                      ++
T Consensus       259 vv  260 (1405)
T KOG3630|consen  259 VV  260 (1405)
T ss_pred             EE
Confidence            43

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.57  E-value=0.47  Score=41.57  Aligned_cols=164  Identities=18%  Similarity=0.125  Sum_probs=94.8

Q ss_pred             cEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe-CCCCceE-
Q psy8448         152 AVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG-LKSGKML-  228 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~-  228 (482)
                      .+...+++++++.++... .++.-.+|-...+.......  ....+....|++++...+....+...+++. ..+++.. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688999999999887766 23333344334444333332  233688889999977666666566666663 3333321 


Q ss_pred             EEee--ccccceeEEEEcCCCCEEEEEe---CCCcEEEEECCC---C---ceeeeeeccCCCccceeEEEEcCCCCCEEE
Q psy8448         229 KEFR--GHSSFVNDITFTADGHSVLSAS---SDGTVKMWNLKT---T---ECTSTFKSLGASDIAVNSIHLLPKNTEHFV  297 (482)
Q Consensus       229 ~~~~--~~~~~i~~l~~~~~~~~l~~~~---~dg~i~i~d~~~---~---~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~  297 (482)
                      ....  .....|..+.++|||..++...   .++.|.+--+..   +   ...............+..+.|.+++ .+++
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V  181 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV  181 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence            1121  1122899999999999888765   346677665432   2   1111111111335678999999998 5555


Q ss_pred             EEeCC-CeEEE-EEcCCcEEEEe
Q psy8448         298 VCNKT-NTVVI-MNMQGQIVRSL  318 (482)
Q Consensus       298 ~~~~d-~~i~i-~d~~~~~~~~~  318 (482)
                      .+... +.+.. ....|.....+
T Consensus       182 ~~~~~~~~~~~~v~~dG~~~~~l  204 (253)
T PF10647_consen  182 LGRSAGGPVVRLVSVDGGPSTPL  204 (253)
T ss_pred             EeCCCCCceeEEEEccCCccccc
Confidence            55443 33333 44455544444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.54  E-value=0.2  Score=37.95  Aligned_cols=123  Identities=14%  Similarity=0.189  Sum_probs=74.6

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-----CCCEEEEEeCCCcEEEEE
Q psy8448         104 ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-----DSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       104 ~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-----~~~~l~~~~~dg~i~iwd  178 (482)
                      ..-+|.....-|++++..|.|.|++.......... ....-.+......|++++-.+     +...|+.|+. ..+..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCcccccccc-ccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence            34567777778888888999999987644321110 011111111245677776544     3456777765 4899999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEcc----CCCEEEEEECCCeEEEEeCCCCceEEEe
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSR----DNSQILTASFDTYVRIHGLKSGKMLKEF  231 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~  231 (482)
                      +..+..+..  +.-...|.++.+-.    ..+.+++| .+..|.-||.+..+...+.
T Consensus        80 V~~N~d~Fy--ke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   80 VENNSDLFY--KEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cccCchhhh--hhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence            988765433  34557788887743    23444444 4788888887655554443

>KOG2444|consensus

Probab=96.53  E-value=0.014  Score=48.12  Aligned_cols=104  Identities=19%  Similarity=0.264  Sum_probs=64.6

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceee-ccccccccccccccccEEEE-EEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRK-DLKYQAQDNFMLMEEAVMSL-AYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE  189 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~h~~~i~~l-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  189 (482)
                      +.-++.|+.+|.|.+|+..--.... .....        ...|.++ .--.++.+..+++.||.|+.|++.-++.+... 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~--------~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-  140 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG--------EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-  140 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcc--------cccceeccccccccceeEEeccCCceeeeccccCceeeee-
Confidence            4568889999999999876211111 11111        1233332 22335668889999999999999888877766 


Q ss_pred             cccC-CCeEEEEEccCCCEEEEE--ECCCeEEEEeCCC
Q psy8448         190 KAHS-LGVTCIQFSRDNSQILTA--SFDTYVRIHGLKS  224 (482)
Q Consensus       190 ~~~~-~~v~~i~~~~~~~~l~~~--~~dg~i~i~d~~~  224 (482)
                      ..|. .++.....+..+..+..+  +.|..++.|++..
T Consensus       141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            4565 455555555555555555  5566666666643

>KOG4499|consensus

Probab=96.53  E-value=0.14  Score=42.60  Aligned_cols=137  Identities=18%  Similarity=0.221  Sum_probs=85.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEeC---------CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-e
Q psy8448         100 KSHVECARFSPDGQYLITGSV---------DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-S  169 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~  169 (482)
                      +.+.+.-..+|+|++.+-.-.         .|.++.|-.. ++...         ....-.--+.++|+.+.+.+... +
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~---------i~~~v~IsNgl~Wd~d~K~fY~iDs  177 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVEL---------IWNCVGISNGLAWDSDAKKFYYIDS  177 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCcee---------eehhccCCccccccccCcEEEEEcc
Confidence            456677788999998442211         2344554322 11111         11111334678898877766554 4


Q ss_pred             CCCcEEEEE--cCCCe-----EeEEeecc---cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecccccee
Q psy8448         170 QSGKVKIWK--IATGQ-----CLRKLEKA---HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVN  239 (482)
Q Consensus       170 ~dg~i~iwd--~~~~~-----~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  239 (482)
                      .+-.|.-||  ..+|.     .+..+.+.   ..-.-..++...+|.+.+++-..++|...|..+|+.+.++.-....|+
T Consensus       178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit  257 (310)
T KOG4499|consen  178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT  257 (310)
T ss_pred             CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence            566777787  44443     23333221   111123445566788888888889999999999999999998899999


Q ss_pred             EEEEcCC
Q psy8448         240 DITFTAD  246 (482)
Q Consensus       240 ~l~~~~~  246 (482)
                      +++|--.
T Consensus       258 sccFgGk  264 (310)
T KOG4499|consen  258 SCCFGGK  264 (310)
T ss_pred             EEEecCC
Confidence            9999643

>KOG1916|consensus

Probab=96.53  E-value=0.00026  Score=69.00  Aligned_cols=171  Identities=16%  Similarity=0.198  Sum_probs=103.8

Q ss_pred             eeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecC--CCceeeccccccccccccccccEEEEEEcC---CCCEEE
Q psy8448          93 KQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFT--TGKIRKDLKYQAQDNFMLMEEAVMSLAYSR---DSEMLA  166 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~---~~~~l~  166 (482)
                      +.+..|..+.|-.++|-. +-..++  -.-|.+.||++.  .|++...+..+.....   ...+.-+.|.|   +..++.
T Consensus       125 ~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~---gs~~~~V~wcp~~~~~~~ic  199 (1283)
T KOG1916|consen  125 NELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPY---GSDPQLVSWCPIAVNKVYIC  199 (1283)
T ss_pred             HHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcC---CCCcceeeecccccccceee
Confidence            356668888899998854 222222  223668888876  5555554444433222   23345556665   667788


Q ss_pred             EEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEE-----------EccCCCEEEEEECCCeEEEEeC-----CCCceEEE
Q psy8448         167 SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ-----------FSRDNSQILTASFDTYVRIHGL-----KSGKMLKE  230 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~-----------~~~~~~~l~~~~~dg~i~i~d~-----~~~~~~~~  230 (482)
                      .+-.++.+++.++.....  .+...|...+..++           .+|||+.++.++.||.+++|.+     +...++..
T Consensus       200 ~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe  277 (1283)
T KOG1916|consen  200 YGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE  277 (1283)
T ss_pred             eccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence            888889999888754432  22244665554443           5899999999999998877765     33455666


Q ss_pred             eecccc-ceeEEEEcCCC---------CEEEEEe-CCCcEEEEECCCCcee
Q psy8448         231 FRGHSS-FVNDITFTADG---------HSVLSAS-SDGTVKMWNLKTTECT  270 (482)
Q Consensus       231 ~~~~~~-~i~~l~~~~~~---------~~l~~~~-~dg~i~i~d~~~~~~~  270 (482)
                      .+.|.+ +-.|.-|+.+.         .++++++ .+..+++|.....+|.
T Consensus       278 wkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  278 WKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            777763 33233233221         1233433 3556888887777665

>KOG4499|consensus

Probab=96.46  E-value=0.42  Score=39.88  Aligned_cols=144  Identities=15%  Similarity=0.160  Sum_probs=87.4

Q ss_pred             cccEEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEE-EEECCCeEEE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQS---------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRI  219 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i  219 (482)
                      ..+.+.-..+|+|++++-.-.|         |.++.|-.  +..+..+ ...-.--+.++|+.+.+.+. +-+.+-.|.-
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i-~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELI-WNCVGISNGLAWDSDAKKFYYIDSLNYEVDA  184 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceee-ehhccCCccccccccCcEEEEEccCceEEee
Confidence            3456677789999984332222         23333322  1111111 11112235678887766554 4556667877


Q ss_pred             Ee--CCCCc-----eEEEeec----cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEE
Q psy8448         220 HG--LKSGK-----MLKEFRG----HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHL  288 (482)
Q Consensus       220 ~d--~~~~~-----~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  288 (482)
                      ||  ..+|.     .+..++.    ..-....++..-+|++.++.-..++|...|..+|+.+..++   -....+++++|
T Consensus       185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik---lPt~qitsccF  261 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK---LPTPQITSCCF  261 (310)
T ss_pred             eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE---cCCCceEEEEe
Confidence            77  55543     2333322    11123456777789988988899999999999999999988   45678999999


Q ss_pred             cCCCCCEEEEE
Q psy8448         289 LPKNTEHFVVC  299 (482)
Q Consensus       289 ~~~~~~~l~~~  299 (482)
                      --.+-.++++.
T Consensus       262 gGkn~d~~yvT  272 (310)
T KOG4499|consen  262 GGKNLDILYVT  272 (310)
T ss_pred             cCCCccEEEEE
Confidence            76543455443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.41  E-value=0.12  Score=48.97  Aligned_cols=123  Identities=13%  Similarity=0.172  Sum_probs=75.2

Q ss_pred             CCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEecCC-----CceeeccccccccccccccccEEEEEEcCCCCEEEEE
Q psy8448          98 GSKSHVECARFSPD----GQYLITGSVDGFIEVWNFTT-----GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG  168 (482)
Q Consensus        98 ~h~~~v~~~~~s~~----~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~  168 (482)
                      |.-..|..+.|.|-    -..|++....+.|.||.+.-     ++.+.....+-...+   .--...+.|+|....|++-
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~---pvLpQGCVWHPk~~iL~VL  130 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF---PVLPQGCVWHPKKAILTVL  130 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc---ccCCCcccccCCCceEEEE
Confidence            55567999999993    33444555578899998762     222222111111111   1113467799999888877


Q ss_pred             eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-CeEEEEeCC
Q psy8448         169 SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-TYVRIHGLK  223 (482)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~i~d~~  223 (482)
                      .....-.++++.......+......+-|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            6655555666654433333323466789999999999998876533 356788743

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.37  E-value=0.38  Score=44.88  Aligned_cols=147  Identities=15%  Similarity=0.185  Sum_probs=83.0

Q ss_pred             CCeEEEEEccCCCEEEEEE-----------CCC-eEEEEeCCC--Cc--eEEEeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         194 LGVTCIQFSRDNSQILTAS-----------FDT-YVRIHGLKS--GK--MLKEFRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       194 ~~v~~i~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      .....|+|.++|.++++-.           ..+ .|.+++-.+  ++  ....+...-.....+++.+++  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            3467788988888666542           123 677776432  22  223443334456889999888  44444444


Q ss_pred             cEEEEECCCC-----ceeeeeeccCC----CccceeEEEEcCCCCCEEEEEeC-------------------CCeEEEEE
Q psy8448         258 TVKMWNLKTT-----ECTSTFKSLGA----SDIAVNSIHLLPKNTEHFVVCNK-------------------TNTVVIMN  309 (482)
Q Consensus       258 ~i~i~d~~~~-----~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~~~~-------------------d~~i~i~d  309 (482)
                      ..++.|....     +....+..+..    +......+.|.|+| .++++.+.                   .+.|.-++
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            3334354321     21112222212    23457789999998 66654441                   14455566


Q ss_pred             cCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         310 MQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      ..+..+..+...   ......++|+++|+++++-..+
T Consensus       171 pdg~~~e~~a~G---~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       171 PDGGKLRVVAHG---FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCeEEEEecC---cCCCccceECCCCCEEEEccCC
Confidence            666656555543   3345689999999887764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.31  Score=39.88  Aligned_cols=177  Identities=14%  Similarity=0.137  Sum_probs=103.2

Q ss_pred             CCCEEEEEeC--CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCeEeEE
Q psy8448         111 DGQYLITGSV--DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGKVKIWKIATGQCLRK  187 (482)
Q Consensus       111 ~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~  187 (482)
                      +|.++.+.+.  ...|++||+.+++.+......+...+   .+.++.+     ++++.. .-.+|.-..+|..+-+.+..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~F---gEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~  126 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVF---GEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGR  126 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCcccc---ccceeec-----cceEEEEEeccceeEEEChHHhhhhcc
Confidence            4556666543  34799999999988766555421111   1222221     233322 23678888899888887777


Q ss_pred             eecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec--ccc---ceeEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448         188 LEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG--HSS---FVNDITFTADGHSVLSASSDGTVKMW  262 (482)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~i~~l~~~~~~~~l~~~~~dg~i~i~  262 (482)
                      +.  ..+.-..++.  ++..|+.+....+++.-|.++.....+..-  ...   .++.+.|- +|...+-.-.+..|...
T Consensus       127 ~~--y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI  201 (262)
T COG3823         127 FS--YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARI  201 (262)
T ss_pred             cc--cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEE
Confidence            63  2333344443  566677777677888888776554433321  112   23344443 55555555555566667


Q ss_pred             ECCCCceeeeeecc---------CCCccceeEEEEcCCCCCEEEEEe
Q psy8448         263 NLKTTECTSTFKSL---------GASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       263 d~~~~~~~~~~~~~---------~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      |..+|+.+..+...         ..+..-.+.|++.|++.+++++|-
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            77777665544321         134456788999999867777664

>PHA03098 kelch-like protein; Provisional

Probab=96.24  E-value=0.37  Score=47.75  Aligned_cols=176  Identities=13%  Similarity=0.010  Sum_probs=83.4

Q ss_pred             CCCEEEEEeCCC------cEEEEEcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCceE
Q psy8448         161 DSEMLASGSQSG------KVKIWKIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGKML  228 (482)
Q Consensus       161 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  228 (482)
                      ++..++.||.++      .+..||..+++....-... .......+.  -++..++.|+.+     ..+..||..+.+-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            456667776542      5778888776543221111 111122222  256777777765     35778888765432


Q ss_pred             E--EeeccccceeEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448         229 K--EFRGHSSFVNDITFTADGHSVLSASSD------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       229 ~--~~~~~~~~i~~l~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      .  .+...... .+++. -+++..+.|+.+      ..+..||..+.+-...-. ....... .++.. .++ .+++.|+
T Consensus       372 ~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~-~~~~~-~~~-~iyv~GG  445 (534)
T PHA03098        372 EEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-LPISHYG-GCAIY-HDG-KIYVIGG  445 (534)
T ss_pred             eCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC-CCccccC-ceEEE-ECC-EEEEECC
Confidence            1  11111111 12222 256666666632      358889988765332111 1111111 12222 233 6667765


Q ss_pred             CC--------CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         301 KT--------NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       301 ~d--------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      .+        ..+.+||........+.....+......+.+  +++.++.|+.+
T Consensus       446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~  497 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK  497 (534)
T ss_pred             ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence            43        2378888854444444322111111122233  56666777665

>PRK13684 Ycf48-like protein; Provisional

Probab=96.16  E-value=1  Score=41.30  Aligned_cols=155  Identities=14%  Similarity=0.081  Sum_probs=86.0

Q ss_pred             ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe-eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy8448         191 AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF-RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC  269 (482)
Q Consensus       191 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~  269 (482)
                      .....+..+.+.|++.+++++. .|.+..-.-..++.-... ......++++.+.++++.++++ ..|.+++=..+.+..
T Consensus       170 ~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        170 DAAGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             CCcceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            3355788999999886665554 665543211222322222 2345678999999998876654 557664323444433


Q ss_pred             eeeeecc-CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE
Q psy8448         270 TSTFKSL-GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV  348 (482)
Q Consensus       270 ~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~  348 (482)
                      -...... ......+..+.+.|++ . +++++.+|.+..-.-.++.................+.|..+++. +..+..|.
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~-~-~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~  324 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPG-E-IWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGV  324 (334)
T ss_pred             cccccCCccccccceeeEEEcCCC-C-EEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCce
Confidence            2222111 0123457788898876 4 44555667665432245554444321111345777888766655 45667787


Q ss_pred             EE
Q psy8448         349 LV  350 (482)
Q Consensus       349 i~  350 (482)
                      |.
T Consensus       325 il  326 (334)
T PRK13684        325 LL  326 (334)
T ss_pred             EE
Confidence            77

>PRK10115 protease 2; Provisional

Probab=96.03  E-value=2.1  Score=43.67  Aligned_cols=202  Identities=11%  Similarity=0.042  Sum_probs=105.7

Q ss_pred             cEEEEEEcCCCCEEEEEe-----CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----
Q psy8448         102 HVECARFSPDGQYLITGS-----VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----  171 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----  171 (482)
                      .+..+.+||||++|+.+.     ....|++.|+.+++.+.... .         ..-..++|.+|++.|+....+     
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~---------~~~~~~~w~~D~~~~~y~~~~~~~~~  197 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-D---------NVEPSFVWANDSWTFYYVRKHPVTLL  197 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-c---------CcceEEEEeeCCCEEEEEEecCCCCC
Confidence            477889999999998753     22378999998876332211 1         111458999999877776543     


Q ss_pred             -CcEEEEEcCCC--eEeEEeecccCCCeE-EEEEccCCCEEEEEEC---CCeEEEEeCC--CCceEEEeeccccceeEEE
Q psy8448         172 -GKVKIWKIATG--QCLRKLEKAHSLGVT-CIQFSRDNSQILTASF---DTYVRIHGLK--SGKMLKEFRGHSSFVNDIT  242 (482)
Q Consensus       172 -g~i~iwd~~~~--~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~i~~l~  242 (482)
                       ..|..+++.++  +....+. ....... .+..+.++++++..+.   ++.+.+++..  .++....+....+....+.
T Consensus       198 ~~~v~~h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  276 (686)
T PRK10115        198 PYQVWRHTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD  276 (686)
T ss_pred             CCEEEEEECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE
Confidence             36777888777  3333332 2222233 3333447777665443   3478888853  3332222221222222222


Q ss_pred             EcCCCCEEEEEeCC----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEE
Q psy8448         243 FTADGHSVLSASSD----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVR  316 (482)
Q Consensus       243 ~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~  316 (482)
                       +.. ..+...+..    ..|...++........+... .....+..+.+..+  .++++...++.-+++-+  .+..+.
T Consensus       277 -~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~~~~~~~~  351 (686)
T PRK10115        277 -HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-RENIMLEGFTLFTD--WLVVEERQRGLTSLRQINRKTREVI  351 (686)
T ss_pred             -eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECC-CCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEcCCCCceE
Confidence             223 333333322    23444454421111222210 12346788888733  57777777776555544  444444


Q ss_pred             Eec
Q psy8448         317 SLS  319 (482)
Q Consensus       317 ~~~  319 (482)
                      .+.
T Consensus       352 ~l~  354 (686)
T PRK10115        352 GIA  354 (686)
T ss_pred             Eec
Confidence            443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.00  E-value=1.4  Score=41.40  Aligned_cols=146  Identities=14%  Similarity=0.228  Sum_probs=88.1

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceee-ccccccccccccccccEEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCC--
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRK-DLKYQAQDNFMLMEEAVMSLAYSR-----DSEMLASGSQSGKVKIWKIATG--  182 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~h~~~i~~l~~~~-----~~~~l~~~~~dg~i~iwd~~~~--  182 (482)
                      +...+++|+..|.++||+...+.... .+-...     .-..+|..+..-+     +...||+ -.-..+.+|.+...  
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-----~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g  109 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-----QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDG  109 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEE-----ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCC
Confidence            34689999999999999986544221 111111     1146788777643     2234444 45567888887321  


Q ss_pred             e-------EeEEeecccC--CCeEEEEEcc----C-CCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         183 Q-------CLRKLEKAHS--LGVTCIQFSR----D-NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       183 ~-------~~~~~~~~~~--~~v~~i~~~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      .       .+..+ ..|.  .....+++-|    . ..+|++-+.||.+.+|+-+.......+.. ---.-.++|.+...
T Consensus       110 ~~~~g~~~~L~~~-yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tD  187 (418)
T PF14727_consen  110 TVEHGNQYQLELI-YEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTD  187 (418)
T ss_pred             CcccCcEEEEEEE-EEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCC
Confidence            1       11111 2232  2333444433    2 36788999999999999765443333332 22234578888888


Q ss_pred             EEEEEeCCCcEEEEEC
Q psy8448         249 SVLSASSDGTVKMWNL  264 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~  264 (482)
                      .|++++.+..+..|..
T Consensus       188 sfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  188 SFVTASSSWTLECYKY  203 (418)
T ss_pred             EEEEecCceeEEEecH
Confidence            8999999888888875

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.92  E-value=2.3  Score=43.23  Aligned_cols=75  Identities=15%  Similarity=0.247  Sum_probs=52.8

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------CeE--eEE-e-------ecccCCCeEEEEEccC---CCE
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIAT----------GQC--LRK-L-------EKAHSLGVTCIQFSRD---NSQ  207 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~--~~~-~-------~~~~~~~v~~i~~~~~---~~~  207 (482)
                      -.|..+.++|+|.+++..|..| |.|..+..          ++.  ... +       .......|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3689999999999999998865 44444321          111  111 1       1234457899999995   588


Q ss_pred             EEEEECCCeEEEEeCCCCc
Q psy8448         208 ILTASFDTYVRIHGLKSGK  226 (482)
Q Consensus       208 l~~~~~dg~i~i~d~~~~~  226 (482)
                      |++=+.|+.+++||+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            9888899999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.92  E-value=1.5  Score=41.02  Aligned_cols=144  Identities=11%  Similarity=0.084  Sum_probs=78.5

Q ss_pred             CcEEEEEEcCCCCEEEEEe-----------CCC-eEEEEecCCC--ceeeccccccccccccccccEEEEEEcCCCCEEE
Q psy8448         101 SHVECARFSPDGQYLITGS-----------VDG-FIEVWNFTTG--KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA  166 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~-----------~dg-~v~iwd~~~~--~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  166 (482)
                      .....|+|.++|+++++-.           ..+ .|.+++-.++  +.........      .-.....+++.+++ .+ 
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~------~l~~p~Gi~~~~~G-ly-   85 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE------ELSMVTGLAVAVGG-VY-   85 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec------CCCCccceeEecCC-EE-
Confidence            3467789999999887753           223 7777765433  2211111110      12346889999888 44 


Q ss_pred             EEeCCCcEEEE-EcCCC-----e--EeEE-eecc---cCCCeEEEEEccCCCEEEEEECC-------------------C
Q psy8448         167 SGSQSGKVKIW-KIATG-----Q--CLRK-LEKA---HSLGVTCIQFSRDNSQILTASFD-------------------T  215 (482)
Q Consensus       167 ~~~~dg~i~iw-d~~~~-----~--~~~~-~~~~---~~~~v~~i~~~~~~~~l~~~~~d-------------------g  215 (482)
                      ++... .|..+ |....     +  .+.. +...   +......++|.|+|.+.++-+..                   |
T Consensus        86 V~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g  164 (367)
T TIGR02604        86 VATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG  164 (367)
T ss_pred             EeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence            44444 34434 43211     1  1211 2111   12347789999999766644411                   4


Q ss_pred             eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         216 YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       216 ~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      .|.-++...++. ..+...-.....++|+++|+++++-.
T Consensus       165 ~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       165 GLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             eEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            566666655443 22322233457899999998776544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA02790 Kelch-like protein; Provisional

Probab=95.90  E-value=1.1  Score=43.53  Aligned_cols=183  Identities=7%  Similarity=-0.034  Sum_probs=87.4

Q ss_pred             CCCEEEEEeCCC-----eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCe
Q psy8448         111 DGQYLITGSVDG-----FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS--GKVKIWKIATGQ  183 (482)
Q Consensus       111 ~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d--g~i~iwd~~~~~  183 (482)
                      ++.++++|+.++     .+..||..+++..........      ......+.  -++...+.||.+  ..+..||..+++
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~------r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~  342 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP------RLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAA  342 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch------hhcceEEE--ECCEEEEECCcCCCCceEEEECCCCe
Confidence            455667777543     577788877654332222211      11122222  356677777753  357888876654


Q ss_pred             EeEEeecccCCCeEEEEEccCCCEEEEEECCC---eEEEEeCCCCceEE--EeeccccceeEEEEcCCCCEEEEEeCCCc
Q psy8448         184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDT---YVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDGT  258 (482)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~dg~  258 (482)
                      ....-.......-.++ ..-+|...+.|+.++   .+..||.++.+-..  .+....... +++ .-++...+.|   |.
T Consensus       343 W~~~~~l~~~r~~~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~  416 (480)
T PHA02790        343 WVNMPSLLKPRCNPAV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RN  416 (480)
T ss_pred             EEECCCCCCCCcccEE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---Cc
Confidence            3221111111111112 223677777777553   46788887654322  111111111 222 2355555555   35


Q ss_pred             EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcC
Q psy8448         259 VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQ  311 (482)
Q Consensus       259 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~  311 (482)
                      +.+||.++.+-... .......... +++.. ++ .++++|+.+     ..+..||..
T Consensus       417 ~e~ydp~~~~W~~~-~~m~~~r~~~-~~~v~-~~-~IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        417 AEFYCESSNTWTLI-DDPIYPRDNP-ELIIV-DN-KLLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             eEEecCCCCcEeEc-CCCCCCcccc-EEEEE-CC-EEEEECCcCCCcccceEEEEECC
Confidence            78899887654322 2111111122 22222 33 677777654     345666664

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.81  E-value=1.5  Score=44.44  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=55.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCC----------Cce--e-eccccccccccccccccEEEEEEcCC---CC
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTT----------GKI--R-KDLKYQAQDNFMLMEEAVMSLAYSRD---SE  163 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~----------~~~--~-~~~~~~~~~~~~~h~~~i~~l~~~~~---~~  163 (482)
                      .-.|..+.+||+|.+||..|..| |.|-.+..          |+.  . ..+..........+...|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            35799999999999999888766 55544431          111  0 01111111111223568999999995   57


Q ss_pred             EEEEEeCCCcEEEEEcCCCe
Q psy8448         164 MLASGSQSGKVKIWKIATGQ  183 (482)
Q Consensus       164 ~l~~~~~dg~i~iwd~~~~~  183 (482)
                      .|++-+.|+++++||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            89999999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10115 protease 2; Provisional

Probab=95.81  E-value=2.6  Score=43.01  Aligned_cols=194  Identities=11%  Similarity=0.073  Sum_probs=105.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC------CeEEEE
Q psy8448         152 AVMSLAYSRDSEMLASGSQS-----GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD------TYVRIH  220 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------g~i~i~  220 (482)
                      .+..+.|+|++++|+.+...     ..|++.|+.+++.+..... .. . ..++|.+|++.|+....+      ..|+.+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-NV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-Cc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            47788899999988876432     3688999988764332211 11 1 459999998877765442      368888


Q ss_pred             eCCCC--ceEEEeecccccee-EEEEcCCCCEEEEEeC---CCcEEEEECC--CCceeeeeeccCCCccceeEEEEcCCC
Q psy8448         221 GLKSG--KMLKEFRGHSSFVN-DITFTADGHSVLSASS---DGTVKMWNLK--TTECTSTFKSLGASDIAVNSIHLLPKN  292 (482)
Q Consensus       221 d~~~~--~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~  292 (482)
                      ++.++  +....+........ .+..+.++++++..+.   ++.+.+++..  .+.....+.   ........+. +..+
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~  280 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP---RRKDHEYSLD-HYQH  280 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE---CCCCCEEEEE-eCCC
Confidence            88887  33334443233233 3333447887765443   4568888853  333222222   1111222222 2222


Q ss_pred             CCEEEEEeCC-CeEEEE--EcCC-cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         293 TEHFVVCNKT-NTVVIM--NMQG-QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       293 ~~~l~~~~~d-~~i~i~--d~~~-~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                       .+++....+ ...++.  ++.. .....+..+. ....+..+.+. .+.++++...+|.-+++.++
T Consensus       281 -~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        281 -RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             -EEEEEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence             444443322 233343  3331 1222333221 13467777777 34566677778888877654

>KOG2280|consensus

Probab=95.74  E-value=1.3  Score=43.77  Aligned_cols=237  Identities=14%  Similarity=0.131  Sum_probs=113.4

Q ss_pred             cccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE
Q psy8448          87 YPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA  166 (482)
Q Consensus        87 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  166 (482)
                      ...++..++...|. .+-.+.|+.+..+ ++-..+|++++|++-... +.......    ......|..+.+..+|-  +
T Consensus        71 ~sG~lL~~~~w~~~-~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge~-ie~~svg~----e~~~~~I~ec~~f~~GV--a  141 (829)
T KOG2280|consen   71 ISGQLLGRILWKHG-ELIGMGWSDDEEL-ICVQKDGTVHVYGLLGEF-IESNSVGF----ESQMSDIVECRFFHNGV--A  141 (829)
T ss_pred             ccccchHHHHhcCC-CeeeecccCCceE-EEEeccceEEEeecchhh-hccccccc----ccccCceeEEEEecCce--E
Confidence            44555666666666 7888999987765 455689999999975332 22211100    00123344444444553  3


Q ss_pred             EEeCCCcEEEEEcCCCeEeEEeec--ccCCCeEEEEEccCCC--EEEEE-E-CCCeEEEEeCCCCc-eEEEeecccccee
Q psy8448         167 SGSQSGKVKIWKIATGQCLRKLEK--AHSLGVTCIQFSRDNS--QILTA-S-FDTYVRIHGLKSGK-MLKEFRGHSSFVN  239 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~i~~~~~~~--~l~~~-~-~dg~i~i~d~~~~~-~~~~~~~~~~~i~  239 (482)
                      .-..+|.+.+-+-......+++..  ....+-.|-...+++.  .++.. . ..+ ..++...... ....+....+.+.
T Consensus       142 vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~  220 (829)
T KOG2280|consen  142 VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVV  220 (829)
T ss_pred             EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEE
Confidence            333455555443222222232211  1111112222222211  11111 0 011 0111111111 1122222235678


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEec
Q psy8448         240 DITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS  319 (482)
Q Consensus       240 ~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  319 (482)
                      .+..+|+.++|+--...|.|.+-+.+..++...+..  ....+-..++|..+.   -++.+.+..+.+....|..+.-+.
T Consensus       221 ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~--~~~~~p~qm~Wcgnd---aVvl~~e~~l~lvgp~gd~V~f~y  295 (829)
T KOG2280|consen  221 KISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC--TDHDPPKQMAWCGND---AVVLSWEVNLMLVGPPGDSVQFYY  295 (829)
T ss_pred             EEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC--CCCCchHhceeecCC---ceEEEEeeeEEEEcCCCCcccccc
Confidence            899999999999999999999999888777666652  112222356665543   222233333444433343333333


Q ss_pred             CCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448         320 SGKREGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       320 ~~~~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      .+     .+. +.--+||-.+++.+
T Consensus       296 d~-----t~~-l~~E~DGVRI~t~t  314 (829)
T KOG2280|consen  296 DE-----TAI-LSAEVDGVRIITST  314 (829)
T ss_pred             CC-----Cce-eeeccCeeEEeccc
Confidence            21     111 44455665555544

>KOG1897|consensus

Probab=95.55  E-value=3.3  Score=42.37  Aligned_cols=241  Identities=13%  Similarity=0.111  Sum_probs=131.7

Q ss_pred             CCcEEEEEEcC-C---CCEEEEEe---CCCeEEEEecCCC-ceeeccccccccccccccccEEEEE--EcCC-CCEEEEE
Q psy8448         100 KSHVECARFSP-D---GQYLITGS---VDGFIEVWNFTTG-KIRKDLKYQAQDNFMLMEEAVMSLA--YSRD-SEMLASG  168 (482)
Q Consensus       100 ~~~v~~~~~s~-~---~~~l~s~~---~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~h~~~i~~l~--~~~~-~~~l~~~  168 (482)
                      -++|..++.-. +   +..+++|+   .||+++|..-.-+ ........+      | -..+..+.  +.++ .++|+.+
T Consensus       353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~------G-ikg~w~lk~~v~~~~d~ylvls  425 (1096)
T KOG1897|consen  353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLP------G-IKGMWSLKSMVDENYDNYLVLS  425 (1096)
T ss_pred             ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecC------C-ccceeEeeccccccCCcEEEEE
Confidence            45788877654 2   35666664   6899999853211 111111222      1 23566666  4441 2356555


Q ss_pred             eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448         169 SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      -.+ .-++..+... .......+.......+..+- .++.|+=.. ...|++++-.  .....+... +.++....+.+.
T Consensus       426 f~~-eTrvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~  499 (1096)
T KOG1897|consen  426 FIS-ETRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA--GLRSEWRPP-GKITIGVVSANA  499 (1096)
T ss_pred             ecc-ceEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch--hhhhcccCC-CceEEEEEeecc
Confidence            433 4455655332 22222123333334444433 344444333 3457777744  233444433 334444445566


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC--CCC---EEEEEeCCCeEEEEEc--CCcEEEEe-c
Q psy8448         248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK--NTE---HFVVCNKTNTVVIMNM--QGQIVRSL-S  319 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~---~l~~~~~d~~i~i~d~--~~~~~~~~-~  319 (482)
                      ..++.++.++.+...++..+......+.  .....|.|+.++|-  +++   ++++|..+..+.+.-.  +...+... .
T Consensus       500 sqVvvA~~~~~l~y~~i~~~~l~e~~~~--~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l  577 (1096)
T KOG1897|consen  500 SQVVVAGGGLALFYLEIEDGGLREVSHK--EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL  577 (1096)
T ss_pred             eEEEEecCccEEEEEEeeccceeeeeeh--eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc
Confidence            6788888888888888776653222221  44678899999875  334   7888887776655544  33332222 1


Q ss_pred             CCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         320 SGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       320 ~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ....-...|.-.++-.|..+|.++..||.+.-|-++
T Consensus       578 ~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  578 SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             CCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence            111123445556676778999999999999977554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.48  E-value=0.93  Score=45.17  Aligned_cols=152  Identities=12%  Similarity=0.104  Sum_probs=91.4

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceee------cccccccccc--------ccccccEEEEEEcC--CCCEEEEEeCCCcEE
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRK------DLKYQAQDNF--------MLMEEAVMSLAYSR--DSEMLASGSQSGKVK  175 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~------~~~~~~~~~~--------~~h~~~i~~l~~~~--~~~~l~~~~~dg~i~  175 (482)
                      .++|+++. .+.|.||++..-....      .+...+....        ......|+.|....  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66777765 6889999986433211      1110000000        00123466665544  556889999999999


Q ss_pred             EEEcCC-------C----eE-------eEEeecccCCCeEEEEEc--cCCCEEEEEECCCeEEEEeCCCC--ceE-EEee
Q psy8448         176 IWKIAT-------G----QC-------LRKLEKAHSLGVTCIQFS--RDNSQILTASFDTYVRIHGLKSG--KML-KEFR  232 (482)
Q Consensus       176 iwd~~~-------~----~~-------~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~dg~i~i~d~~~~--~~~-~~~~  232 (482)
                      +|.+++       .    +.       ...+...-...++.++++  ...++||+++....|.||-....  +.. ..-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            997521       1    00       001112234578999998  67778888887777777654331  111 1111


Q ss_pred             ccccceeEEEEcCCC---C---EEEEEeCCCcEEEEEC
Q psy8448         233 GHSSFVNDITFTADG---H---SVLSASSDGTVKMWNL  264 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~---~---~l~~~~~dg~i~i~d~  264 (482)
                      .+...|.+++|.++.   .   ++++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            266779999997743   2   7788899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13684 Ycf48-like protein; Provisional

Probab=95.46  E-value=2.1  Score=39.39  Aligned_cols=230  Identities=12%  Similarity=0.115  Sum_probs=110.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecC-CCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFT-TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      ...+.++.|....+-+++|. +|.|  |... .|+.-........    .....+.++.|.++ ..+++ +..+.|  +.
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~----~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~  113 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLP----EENFRLISISFKGD-EGWIV-GQPSLL--LH  113 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCc----ccccceeeeEEcCC-cEEEe-CCCceE--EE
Confidence            55789999986666677665 4533  3322 2322111111100    01234777888653 33443 445543  33


Q ss_pred             cCC-CeEeEEeecc--cC-CCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee-ccccceeEEEEcCCCCEEEEE
Q psy8448         179 IAT-GQCLRKLEKA--HS-LGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-GHSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       179 ~~~-~~~~~~~~~~--~~-~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~  253 (482)
                      ..+ ++.-..+...  .. ......+..+ +. +..++..|.|..=+ +.++.-..+. .....+.++.+.|++.+++++
T Consensus       114 S~DgG~tW~~~~~~~~~~~~~~~i~~~~~-~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g  190 (334)
T PRK13684        114 TTDGGKNWTRIPLSEKLPGSPYLITALGP-GT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS  190 (334)
T ss_pred             ECCCCCCCeEccCCcCCCCCceEEEEECC-Cc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEe
Confidence            232 2222222111  11 1122222222 22 33334455443322 3343332222 234568899999987665544


Q ss_pred             eCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCC-cccCcCEEE
Q psy8448         254 SSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSG-KREGGDFLC  330 (482)
Q Consensus       254 ~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~-~~~~~~v~~  330 (482)
                       ..|.+..- .+. ++.-.....  .....+.++.+.+++ ..++++ ..|.+++-.. .|......... ......+..
T Consensus       191 -~~G~i~~s-~~~gg~tW~~~~~--~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~  264 (334)
T PRK13684        191 -SRGNFYST-WEPGQTAWTPHQR--NSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLD  264 (334)
T ss_pred             -CCceEEEE-cCCCCCeEEEeeC--CCcccceeeeEcCCC-CEEEEe-cCCEEEEccCCCCCccccccCCccccccceee
Confidence             45644422 122 222222221  445678899999987 555554 5576654323 34433332221 111345788


Q ss_pred             EEEcCCCCEEEEEeCCcEEE
Q psy8448         331 CTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +++.+++..++ ++.+|.+.
T Consensus       265 v~~~~~~~~~~-~G~~G~v~  283 (334)
T PRK13684        265 LAYRTPGEIWA-GGGNGTLL  283 (334)
T ss_pred             EEEcCCCCEEE-EcCCCeEE
Confidence            99999877555 55667665

>PHA02790 Kelch-like protein; Provisional

Probab=95.44  E-value=1.5  Score=42.74  Aligned_cols=174  Identities=5%  Similarity=-0.106  Sum_probs=82.0

Q ss_pred             CCCEEEEEeCCC-----cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC--CeEEEEeCCCCceE--EEe
Q psy8448         161 DSEMLASGSQSG-----KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD--TYVRIHGLKSGKML--KEF  231 (482)
Q Consensus       161 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~--~~~  231 (482)
                      ++..+++||.++     .+..||..+++....-.......-.+++ .-++...++|+.+  ..+..||..+++-.  ..+
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            455667776543     4677888776543221111111111122 2367777777754  35788887655322  122


Q ss_pred             eccccceeEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448         232 RGHSSFVNDITFTADGHSVLSASSDG---TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM  308 (482)
Q Consensus       232 ~~~~~~i~~l~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~  308 (482)
                      ....... +++ .-+++..+.|+.++   .+..||.++.+-...-. ....... .+++ .-++ .+++.|+   .+.+|
T Consensus       350 ~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~-~~~~-~~~~-~IYv~GG---~~e~y  420 (480)
T PHA02790        350 LKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYK-SCAL-VFGR-RLFLVGR---NAEFY  420 (480)
T ss_pred             CCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCcccc-ceEE-EECC-EEEEECC---ceEEe
Confidence            1111111 122 22567777777543   47788887654332111 1111111 1222 2233 5666663   46788


Q ss_pred             EcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         309 NMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       309 d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      |........+............+.+  +|+..+.||.+
T Consensus       421 dp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~  456 (480)
T PHA02790        421 CESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFY  456 (480)
T ss_pred             cCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcC
Confidence            8854444444332211222222333  56777777755

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.39  E-value=2.6  Score=40.19  Aligned_cols=199  Identities=14%  Similarity=0.139  Sum_probs=105.3

Q ss_pred             EEEEcCCCCEEEEEeCC-----------CeEEEEecCCCceeecccccccccccccccc-EEEEEEcCCCCEEEEEeCC-
Q psy8448         105 CARFSPDGQYLITGSVD-----------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA-VMSLAYSRDSEMLASGSQS-  171 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~-i~~l~~~~~~~~l~~~~~d-  171 (482)
                      .+.|.++++.|+....+           ..|+.|.+.+......+-.....     ... ...+..++++++|+..... 
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~-----~~~~~~~~~~s~d~~~l~i~~~~~  248 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPD-----EPFWFVSVSRSKDGRYLFISSSSG  248 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TT-----CTTSEEEEEE-TTSSEEEEEEESS
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecC-----CCcEEEEEEecCcccEEEEEEEcc
Confidence            38999998887766433           24788888766543222222110     122 6688899999988765432 


Q ss_pred             ---CcEEEEEcCCC----eEeEEeecccCCCeEEEEEccCCCEEEEEE---CCCeEEEEeCCCCce---EEEeecccc--
Q psy8448         172 ---GKVKIWKIATG----QCLRKLEKAHSLGVTCIQFSRDNSQILTAS---FDTYVRIHGLKSGKM---LKEFRGHSS--  236 (482)
Q Consensus       172 ---g~i~iwd~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~--  236 (482)
                         ..+.+.++..+    .....+ ......+....-+..+.+++...   .++.|...++.+...   ...+..+..  
T Consensus       249 ~~~s~v~~~d~~~~~~~~~~~~~l-~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~  327 (414)
T PF02897_consen  249 TSESEVYLLDLDDGGSPDAKPKLL-SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV  327 (414)
T ss_dssp             SSEEEEEEEECCCTTTSS-SEEEE-EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred             ccCCeEEEEeccccCCCcCCcEEE-eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence               35788888764    233344 23333444333333444444442   235788888887753   334555555  


Q ss_pred             ceeEEEEcCCCCEEEEE-eCCC--cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC---CeEEEEEc
Q psy8448         237 FVNDITFTADGHSVLSA-SSDG--TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT---NTVVIMNM  310 (482)
Q Consensus       237 ~i~~l~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~i~d~  310 (482)
                      .+..+..  .+.+|+.. ..++  .|+++++..+.....+..  ...+.|..+...+++..+++..+.-   +++..||+
T Consensus       328 ~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~--p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~  403 (414)
T PF02897_consen  328 SLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPL--PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL  403 (414)
T ss_dssp             EEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEES--SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred             eEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecC--CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            3445544  44455544 3343  488999883444444432  2344566666666665555554432   56777888


Q ss_pred             CCc
Q psy8448         311 QGQ  313 (482)
Q Consensus       311 ~~~  313 (482)
                      ...
T Consensus       404 ~t~  406 (414)
T PF02897_consen  404 ATG  406 (414)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.38  E-value=2.2  Score=39.20  Aligned_cols=103  Identities=20%  Similarity=0.285  Sum_probs=57.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE---eEEe---ecccCCCeEEEEEccC---CCEEEEEECC--------
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC---LRKL---EKAHSLGVTCIQFSRD---NSQILTASFD--------  214 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~---~~~~~~~v~~i~~~~~---~~~l~~~~~d--------  214 (482)
                      ..+.|+|.|+++.++ +...|.|++++ ..+..   +..+   ..........++++|+   +.+|.+....        
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            468999999987655 56699999999 44443   2222   1234456899999994   3444443321        


Q ss_pred             -CeEEEEeCCCC-------ceE-EEeec---cccceeEEEEcCCCCEEEEEeCC
Q psy8448         215 -TYVRIHGLKSG-------KML-KEFRG---HSSFVNDITFTADGHSVLSASSD  256 (482)
Q Consensus       215 -g~i~i~d~~~~-------~~~-~~~~~---~~~~i~~l~~~~~~~~l~~~~~d  256 (482)
                       ..|.-|.....       +.+ ..+..   ....-..|.|.|||.+.++.+..
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence             23444444333       111 11121   23445679999999776666543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.37  E-value=1.1  Score=44.28  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=73.1

Q ss_pred             eEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee-ccccceeEEEEc--CCCCEEEEEeCCCcEEEEECC-----C-
Q psy8448         196 VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-GHSSFVNDITFT--ADGHSVLSASSDGTVKMWNLK-----T-  266 (482)
Q Consensus       196 v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~l~~~--~~~~~l~~~~~dg~i~i~d~~-----~-  266 (482)
                      ..-+.-+.-++..++-+....+.|||.+.+....+-. ...+.|.++.|.  |+++.+++.+..+.|.+|.-.     + 
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            4444444444444444445589999998887443322 357789999986  588999999999999998642     1 


Q ss_pred             ---CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         267 ---TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       267 ---~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                         ...++.+........+|.+..|.++|  .+++|+ ++.+.++|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGS-GNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCC--eEEEEe-CCEEEEECC
Confidence               12333333222344789999999997  344433 467888876

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.37  E-value=1.8  Score=38.08  Aligned_cols=214  Identities=14%  Similarity=0.143  Sum_probs=123.5

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcC------CCeE-eEEeec----ccCCCeEEEEEccCCC------------EE
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIA------TGQC-LRKLEK----AHSLGVTCIQFSRDNS------------QI  208 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~------~~~~-~~~~~~----~~~~~v~~i~~~~~~~------------~l  208 (482)
                      .-..|+++|.+..-++....+...+||..      .... ...+..    ......+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            46789999999888888888899999986      1222 222211    0234577788875322            36


Q ss_pred             EEEECCCeEEEEeCCCCce-----EEEee-ccccce-eEEEEcC--CCCEEEEE-eCCCcEEEEECCCCceee--eeecc
Q psy8448         209 LTASFDTYVRIHGLKSGKM-----LKEFR-GHSSFV-NDITFTA--DGHSVLSA-SSDGTVKMWNLKTTECTS--TFKSL  276 (482)
Q Consensus       209 ~~~~~dg~i~i~d~~~~~~-----~~~~~-~~~~~i-~~l~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~--~~~~~  276 (482)
                      +.+++||+|.-|...-...     ...+. ...+.| ..+++..  .+.+|..+ -..++|.+||-.-.+...  .+...
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            7788999999998533222     12222 112222 3455443  34555544 357889999854332211  11100


Q ss_pred             --CCCccceeEEEEcCCCCCEEEE-------------EeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcC------
Q psy8448         277 --GASDIAVNSIHLLPKNTEHFVV-------------CNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSP------  335 (482)
Q Consensus       277 --~~~~~~v~~i~~~~~~~~~l~~-------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~------  335 (482)
                        ...-.+ ..|.-.  +..++++             +..-|.|-+||..|+.++++..... -...+.++..|      
T Consensus       184 ~iPagyAP-FnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~-LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       184 ALPAGYAP-FNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGR-LNAPWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCCCCC-cceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCc-ccCCceeeeChhhhCCC
Confidence              000001 011110  1123332             3334789999999999999865432 34446677755      


Q ss_pred             CCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccc
Q psy8448         336 RGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGF  387 (482)
Q Consensus       336 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (482)
                      .|.+|+---.||+|-                  .||..+|..+-.+...++.
T Consensus       260 sg~lLVGNFGDG~In------------------aFD~~sG~~~g~L~~~~G~  293 (336)
T TIGR03118       260 SGALLVGNFGDGTIN------------------AYDPQSGAQLGQLLDPDNH  293 (336)
T ss_pred             CCCeEEeecCCceeE------------------EecCCCCceeeeecCCCCC
Confidence            467788777799999                  7777777666666555444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.97  E-value=0.12  Score=30.29  Aligned_cols=31  Identities=26%  Similarity=0.572  Sum_probs=26.0

Q ss_pred             CcEEEEEEcCC-C--CEEEEEeCCCeEEEEecCC
Q psy8448         101 SHVECARFSPD-G--QYLITGSVDGFIEVWNFTT  131 (482)
Q Consensus       101 ~~v~~~~~s~~-~--~~l~s~~~dg~v~iwd~~~  131 (482)
                      +.|.+++|||+ +  ++|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999984 4  5888888889999999985

It contains a characteristic DLL sequence motif.

>KOG1897|consensus

Probab=94.91  E-value=5.2  Score=41.03  Aligned_cols=232  Identities=13%  Similarity=0.137  Sum_probs=113.9

Q ss_pred             CCCcEEEEEEcCC--C----CEEEEEeCCCeEEEEe-cCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448          99 SKSHVECARFSPD--G----QYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus        99 h~~~v~~~~~s~~--~----~~l~s~~~dg~v~iwd-~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      -...|.|+.++|-  +    ++++.|..+..+.+-- ..+...........    ..-...|....+-.+..+|.++..|
T Consensus       529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~----~~iPRSIl~~~~e~d~~yLlvalgd  604 (1096)
T KOG1897|consen  529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG----EIIPRSILLTTFEGDIHYLLVALGD  604 (1096)
T ss_pred             ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC----CccchheeeEEeeccceEEEEEcCC
Confidence            3568999999983  2    2788887666554443 33333222211111    1113456666676678899999999


Q ss_pred             CcEEEEEcCCCeEeEE-ee--cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEE-EEcC--
Q psy8448         172 GKVKIWKIATGQCLRK-LE--KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDI-TFTA--  245 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~-~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l-~~~~--  245 (482)
                      |.+..+.+..+..... .+  .-...++.--.|+..+..-+.+..|.-..+|.- +++.+.+--. -..+..+ .|+.  
T Consensus       605 G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls-~kev~~~c~f~s~a  682 (1096)
T KOG1897|consen  605 GALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLS-LKEVNHMCPFNSDA  682 (1096)
T ss_pred             ceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccc-hHHhhhhccccccc
Confidence            9988776544332211 10  113345555566665444444444665556653 3333222110 0111111 1222  


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeC-----------CC---eEEEEE
Q psy8448         246 DGHSVLSASSDGTVKMWNLKTTEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-----------TN---TVVIMN  309 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-----------d~---~i~i~d  309 (482)
                      -...++++. .+.+++.-++.-+.  ++++    .-......+++.+.. ..+.+.+.           ..   .++++|
T Consensus       683 ~~d~l~~~~-~~~l~i~tid~iqkl~irtv----pl~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD  756 (1096)
T KOG1897|consen  683 YPDSLASAN-GGALTIGTIDEIQKLHIRTV----PLGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLD  756 (1096)
T ss_pred             CCceEEEec-CCceEEEEecchhhcceeee----cCCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEec
Confidence            123344444 44577776654332  2222    233455667777643 34444332           11   244444


Q ss_pred             cCCcEEEEecCCcc----cCcCEEEEEEcCC-CCEEEEEe
Q psy8448         310 MQGQIVRSLSSGKR----EGGDFLCCTTSPR-GEWIYCVG  344 (482)
Q Consensus       310 ~~~~~~~~~~~~~~----~~~~v~~~~~~~~-g~~l~~~~  344 (482)
                      -+  ....+..+..    ....+.++.|..| +.++++|.
T Consensus       757 ~n--Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT  794 (1096)
T KOG1897|consen  757 QN--TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGT  794 (1096)
T ss_pred             CC--ceeEEeeccccccceeeeeeeeeecCCCceEEEEEE
Confidence            42  2222222211    1234556668877 67777775

>PLN02153 epithiospecifier protein

Probab=94.79  E-value=3.3  Score=38.23  Aligned_cols=153  Identities=9%  Similarity=0.070  Sum_probs=72.0

Q ss_pred             CCCEEEEEeCC-------CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEE
Q psy8448         111 DGQYLITGSVD-------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIWK  178 (482)
Q Consensus       111 ~~~~l~s~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd  178 (482)
                      ++++++.|+.+       ..+.+||+.+.+-............  .......+.+  +++.++.|+.+     ..+.+||
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~--~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd  107 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRI--SCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYD  107 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCC--ccCceEEEEE--CCEEEEECCCCCCCccCcEEEEE
Confidence            45666767653       3588889887654322111100000  0001222222  45667777653     3578889


Q ss_pred             cCCCeEeEEeec-----ccCCCeEEEEEccCCCEEEEEECC-----------CeEEEEeCCCCceEEEeeccc-----cc
Q psy8448         179 IATGQCLRKLEK-----AHSLGVTCIQFSRDNSQILTASFD-----------TYVRIHGLKSGKMLKEFRGHS-----SF  237 (482)
Q Consensus       179 ~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~-----~~  237 (482)
                      +.+.+-...-..     .....-.+++ .-+++.++.|+.+           ..+.+||.++.+-.. +....     ..
T Consensus       108 ~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~  185 (341)
T PLN02153        108 TVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRG  185 (341)
T ss_pred             CCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCC
Confidence            877654321100     1111112222 2356666776643           257788887654321 11110     00


Q ss_pred             eeEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCcee
Q psy8448         238 VNDITFTADGHSVLSASS-------------DGTVKMWNLKTTECT  270 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~~  270 (482)
                      -.+++. -+++.++.++.             ...+.+||+.+.+-.
T Consensus       186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence            112222 25565555542             145888998876543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.74  E-value=3.1  Score=41.69  Aligned_cols=114  Identities=10%  Similarity=0.093  Sum_probs=74.2

Q ss_pred             eEEEEEcc--CCCEEEEEECCCeEEEEeCCC-------C-------------ceEEEeeccccceeEEEEc--CCCCEEE
Q psy8448         196 VTCIQFSR--DNSQILTASFDTYVRIHGLKS-------G-------------KMLKEFRGHSSFVNDITFT--ADGHSVL  251 (482)
Q Consensus       196 v~~i~~~~--~~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~~~~i~~l~~~--~~~~~l~  251 (482)
                      |+.|....  +...|+.+..||.|.+|.+++       .             ++...+. -....++++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            44444433  456788999999999996531       0             0112222 34468899998  7888888


Q ss_pred             EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC--CC---EEEEEeCCCeEEEEEc
Q psy8448         252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN--TE---HFVVCNKTNTVVIMNM  310 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~---~l~~~~~d~~i~i~d~  310 (482)
                      +++....|.||-+..............+...|.+|.|.++.  +.   .+++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888765432111111111356678899998764  22   6777888999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.64  E-value=0.54  Score=43.95  Aligned_cols=143  Identities=15%  Similarity=0.159  Sum_probs=90.2

Q ss_pred             CCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC-------EEEEEeCCCcEEEEEcCC
Q psy8448         110 PDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE-------MLASGSQSGKVKIWKIAT  181 (482)
Q Consensus       110 ~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-------~l~~~~~dg~i~iwd~~~  181 (482)
                      .+..+|. .|+.-..++-.|++-|+.+.....+         ..+ -+.|.|+.+       .-++|-.+..|.-.|.+-
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~---------ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~  546 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLK---------DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA  546 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecC---------Ccc-eeecCCchhHHhcCccceEEeecccceEEecccc
Confidence            3444544 4555567888888888887776655         233 566777432       233444555666666543


Q ss_pred             Ce-EeEEeecccCCCeEEEEEcc----CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC
Q psy8448         182 GQ-CLRKLEKAHSLGVTCIQFSR----DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD  256 (482)
Q Consensus       182 ~~-~~~~~~~~~~~~v~~i~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d  256 (482)
                      .. .+...  .....++.-.|+.    ...++++|+..|.|++||--.-.....+.+....|..+..+.+|.++++.+. 
T Consensus       547 ~gNKi~v~--esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-  623 (776)
T COG5167         547 RGNKIKVV--ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-  623 (776)
T ss_pred             cCCceeee--eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-
Confidence            22 22211  1222222223332    4458999999999999996544445556777888999999999999887775 


Q ss_pred             CcEEEEECC
Q psy8448         257 GTVKMWNLK  265 (482)
Q Consensus       257 g~i~i~d~~  265 (482)
                      ..+.+-|++
T Consensus       624 ~yllL~d~~  632 (776)
T COG5167         624 NYLLLTDVP  632 (776)
T ss_pred             ceEEEEecc
Confidence            467788865

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.61  E-value=2.3  Score=35.47  Aligned_cols=105  Identities=16%  Similarity=0.209  Sum_probs=63.7

Q ss_pred             CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---C---cEEEE-EcCC----
Q psy8448         113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---G---KVKIW-KIAT----  181 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---g---~i~iw-d~~~----  181 (482)
                      +.|+.+...+.|.+|++.+.+......+..       -+.|..+.++..|+||++--.+   .   .+++| |++.    
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-------v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-------VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-------hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence            444444556789999998443332222222       2679999999999999996432   2   45554 2211    


Q ss_pred             CeE---------------------eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC
Q psy8448         182 GQC---------------------LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG  225 (482)
Q Consensus       182 ~~~---------------------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  225 (482)
                      ...                     +..++.+-..++.+++..|-...|++|+ ++.+.+|.+...
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            111                     1222223445678888888555577776 667888887543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.49  E-value=3.4  Score=36.96  Aligned_cols=169  Identities=13%  Similarity=0.128  Sum_probs=91.1

Q ss_pred             cEEEEEcCCCeEeEEeecc-----cCCCeEEEEEccCC-----CEEEEEE-CCCeEEEEeCCCCceEEEeecc-------
Q psy8448         173 KVKIWKIATGQCLRKLEKA-----HSLGVTCIQFSRDN-----SQILTAS-FDTYVRIHGLKSGKMLKEFRGH-------  234 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~-----~~~~v~~i~~~~~~-----~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------  234 (482)
                      .|.+||+.+++.++++..+     ..+.+..+.+....     .++..+. ..+.|.++|+.+++..+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6778888888887776422     23457778876622     2444443 3458999999988765544321       


Q ss_pred             ------------ccceeEEEEcC---CCCEEEEEeCCCcEEEEECCC-----Ccee------eeeeccCCCccceeEEEE
Q psy8448         235 ------------SSFVNDITFTA---DGHSVLSASSDGTVKMWNLKT-----TECT------STFKSLGASDIAVNSIHL  288 (482)
Q Consensus       235 ------------~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~-----~~~~------~~~~~~~~~~~~v~~i~~  288 (482)
                                  ...+..++.+|   ++++|.-....+ -++|.+.+     ....      ..++.+.........+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                        12255666655   555666555433 23333321     1100      011111111235567888


Q ss_pred             cCCCCCEEEEEeCCCeEEEEEcCC----cEEEEecCCcccCcCEEEEEEcC--CCCEEEEE
Q psy8448         289 LPKNTEHFVVCNKTNTVVIMNMQG----QIVRSLSSGKREGGDFLCCTTSP--RGEWIYCV  343 (482)
Q Consensus       289 ~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~--~g~~l~~~  343 (482)
                      .++| .++++--..+.|..|+..+    +....+......-..+..+.+.+  +|.+.+..
T Consensus       194 D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  194 DPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             ETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            8877 7888888899999999965    22333332221134567788887  66554444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2377|consensus

Probab=94.38  E-value=0.86  Score=42.06  Aligned_cols=148  Identities=14%  Similarity=0.287  Sum_probs=89.1

Q ss_pred             eeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccc
Q psy8448          69 TIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML  148 (482)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  148 (482)
                      .+++-++...-|..............  ...+++|.++.||+|.+.||.--.+.+|.+++....+..........    .
T Consensus        37 lfavrSggatgvvvkgpndDVpiSfd--m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck----~  110 (657)
T KOG2377|consen   37 LFAVRSGGATGVVVKGPNDDVPISFD--MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK----T  110 (657)
T ss_pred             EEEEecCCeeEEEEeCCCCCCCceee--ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc----c
Confidence            45555666666665444322222222  24567999999999999999999999999999854443322221111    1


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EeEEeecccCCCeEEEEEccCCCEEEEEE--CCCeEEEEeCCCC
Q psy8448         149 MEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ-CLRKLEKAHSLGVTCIQFSRDNSQILTAS--FDTYVRIHGLKSG  225 (482)
Q Consensus       149 h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~  225 (482)
                      -+..|....|+.+ .-+|.....| +-+|-+...+ .++.. ..+...|.=-.|.++...++.++  ..+.+.=+.++++
T Consensus       111 k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlV-ks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  111 KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLV-KSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhh-hhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            1456999999876 4566665554 5566554333 23333 56777788788888776554433  3344444444433

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.21  E-value=1.9  Score=32.85  Aligned_cols=111  Identities=10%  Similarity=0.076  Sum_probs=68.4

Q ss_pred             EEEccCCCEEEEEECCCeEEEEeCCCCc--------eEEEeeccccceeEEEEcC-----CCCEEEEEeCCCcEEEEECC
Q psy8448         199 IQFSRDNSQILTASFDTYVRIHGLKSGK--------MLKEFRGHSSFVNDITFTA-----DGHSVLSASSDGTVKMWNLK  265 (482)
Q Consensus       199 i~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~dg~i~i~d~~  265 (482)
                      -.|......|++++.-|.|.|++.....        .+..+. -...|++|+-.+     +...|+.|+. ..+..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            4565666678888889999999876432        333343 456677776544     3456666665 569999998


Q ss_pred             CCceeeeeeccCCCccceeEEEEcCCC--CCEEEEEeCCCeEEEEEcCCcEE
Q psy8448         266 TTECTSTFKSLGASDIAVNSIHLLPKN--TEHFVVCNKTNTVVIMNMQGQIV  315 (482)
Q Consensus       266 ~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~  315 (482)
                      +...+..-    .-...++++.+-.-+  ..-++..+....|.-||.+|..+
T Consensus        82 ~N~d~Fyk----e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   82 NNSDLFYK----EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             cCchhhhh----hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            76544332    223456666553221  13455555566777777776554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.19  E-value=0.23  Score=29.12  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=26.1

Q ss_pred             CCeEEEEEccCC---CEEEEEECCCeEEEEeCCC
Q psy8448         194 LGVTCIQFSRDN---SQILTASFDTYVRIHGLKS  224 (482)
Q Consensus       194 ~~v~~i~~~~~~---~~l~~~~~dg~i~i~d~~~  224 (482)
                      +.+.++.|+|+.   .+|+.+-..|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368999999844   5888888889999999985

It contains a characteristic DLL sequence motif.

>KOG2377|consensus

Probab=94.15  E-value=2.4  Score=39.33  Aligned_cols=135  Identities=10%  Similarity=0.168  Sum_probs=84.6

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCC--CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE--
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIAT--GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK--  229 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--  229 (482)
                      +.+-|...++ .+.+...|.+.=|.+..  ......+.....++|.++.|++|++.+++--.+..|.+++....+...  
T Consensus        26 ngvFfDDaNk-qlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANK-QLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcc-eEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            4444543333 33444445555565432  223334434566799999999999999999999999999874433322  


Q ss_pred             --EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC
Q psy8448         230 --EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT  293 (482)
Q Consensus       230 --~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  293 (482)
                        +.+.....|...+|... .-++..+..| +-+|.....+  +.++....+...|+-..|.++..
T Consensus       105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~  166 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETA  166 (657)
T ss_pred             HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccc
Confidence              22333456889999866 5566666655 7777665432  22222236677788888888873

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.14  E-value=1.3  Score=41.61  Aligned_cols=138  Identities=12%  Similarity=0.141  Sum_probs=86.4

Q ss_pred             CCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC--------CEEEEEeCCCcEEEEECCCCc-eeee-
Q psy8448         204 DNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG--------HSVLSASSDGTVKMWNLKTTE-CTST-  272 (482)
Q Consensus       204 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~--------~~l~~~~~dg~i~i~d~~~~~-~~~~-  272 (482)
                      +...|+ .|.....++-.|++.|+.+.++..|..-  -+.|.|+.        +.| +|-.+..|.-.|.+-.. .+.. 
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceeee
Confidence            334443 4555567888899999999998877664  47777742        334 44455556666665422 2221 


Q ss_pred             -eeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE
Q psy8448         273 -FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL  349 (482)
Q Consensus       273 -~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i  349 (482)
                       .+.. .......+..-...  .++++++..|.|++||.-|....+.....  ...|..+..+.+|+++++.+..-.+
T Consensus       555 esKdY-~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAKtalP~l--G~aIk~idvta~Gk~ilaTCk~yll  627 (776)
T COG5167         555 ESKDY-KTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAKTALPGL--GDAIKHIDVTANGKHILATCKNYLL  627 (776)
T ss_pred             eehhc-cccccccccccccC--ceEEEecCCCceeeehhhcchhhhcCccc--ccceeeeEeecCCcEEEEeecceEE
Confidence             1111 12233344444444  58999999999999998555444433322  5678889999999999988765433

>KOG1916|consensus

Probab=93.95  E-value=0.016  Score=57.23  Aligned_cols=117  Identities=12%  Similarity=0.159  Sum_probs=66.2

Q ss_pred             CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCC--CCceE-----EEeeccccceeEE
Q psy8448         170 QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLK--SGKML-----KEFRGHSSFVNDI  241 (482)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~-----~~~~~~~~~i~~l  241 (482)
                      ..+.+++-+....-.-..+.++..+.+-.++|.. +...+.  -.-|.+.+||+.  .|+..     .........+.-+
T Consensus       109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V  186 (1283)
T KOG1916|consen  109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV  186 (1283)
T ss_pred             hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence            3456777765443222234466777888888854 222333  334678888875  34332     2223334455566


Q ss_pred             EEcC---CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC
Q psy8448         242 TFTA---DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN  292 (482)
Q Consensus       242 ~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  292 (482)
                      .|.|   +..++..+-.++.+++........ ..++   .|...+..+++...|
T Consensus       187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r---sHs~~~~d~a~~~~g  236 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR---SHSQRVTDMAFFAEG  236 (1283)
T ss_pred             eecccccccceeeeccCCCceeEeeechHHH-HHHH---hcCCCcccHHHHhhc
Confidence            6665   556677777788888877665432 2333   566666666665544

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=93.80  E-value=5.5  Score=38.29  Aligned_cols=154  Identities=12%  Similarity=0.135  Sum_probs=87.1

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      ..+|..+.+..+|. +-+|+.|| +..||..+++.+..-......+|..+.-+-.+ .+.+|+.+| |.+.+.+..+...
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn  239 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN  239 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence            46788888888875 66677776 66788777776665433333566666655555 577888555 7777776533221


Q ss_pred             Eee-ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448         230 EFR-GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM  308 (482)
Q Consensus       230 ~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~  308 (482)
                      -.. -..+.|..+.-+.+|. +-.|+.+|..+ +.................-+.|.++....+|  -+-+++.++.+++-
T Consensus       240 ~~~~lp~~~I~ll~qD~qG~-lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG--sLWv~t~~giv~~~  315 (671)
T COG3292         240 WGPMLPSGNILLLVQDAQGE-LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG--SLWVGTYGGIVRYL  315 (671)
T ss_pred             cCCCCcchheeeeecccCCC-EEEeeccccee-EecCCCCccccccccCCccccccceeeccCC--CEeeeccCceEEEe
Confidence            111 1344555555555554 56677766443 2333322222222111223455666655555  46667777766665


Q ss_pred             EcC
Q psy8448         309 NMQ  311 (482)
Q Consensus       309 d~~  311 (482)
                      +.+
T Consensus       316 ~a~  318 (671)
T COG3292         316 TAD  318 (671)
T ss_pred             cch
Confidence            543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.31  E-value=1.6  Score=41.02  Aligned_cols=89  Identities=13%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC------------
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD------------  161 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~------------  161 (482)
                      ..+......+.++..+|++++.|+...-|.|.++|+.++..+...+.-..       ..+.-+.....            
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd-------Aqc~wi~~~~~~~~~~~~~~~~~  373 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD-------AQCGWIEVPEEGDRDRSNSNSPK  373 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc-------ceEEEEEeecccccccccccccC
Confidence            34446677899999999999888887889999999999887665543321       11111111000            


Q ss_pred             -----CC-EEEEEeCCCcEEEEEcCCCeEeEEee
Q psy8448         162 -----SE-MLASGSQSGKVKIWKIATGQCLRKLE  189 (482)
Q Consensus       162 -----~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  189 (482)
                           .. +++.+-.-|.|.||.++++..+..+.
T Consensus       374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  374 SSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             CCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence                 11 23335578899999999888777663

>KOG2247|consensus

Probab=93.15  E-value=0.0077  Score=55.25  Aligned_cols=150  Identities=14%  Similarity=0.306  Sum_probs=100.1

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCcEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGKVKIW  177 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iw  177 (482)
                      |-..-....|-|.+.-++.++.+..|..||-. ++.......         +.....++|..++..++. +-..+.+.+|
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~---------tg~aldm~wDkegdvlavlAek~~piylw  102 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP---------TGKALDMAWDKEGDVLAVLAEKTGPIYLW  102 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC---------chhHhhhhhccccchhhhhhhcCCCeeec
Confidence            33334455677866668888888889999843 333332222         356778888887775554 5577899999


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      |+.+... ..++.+....-.-+.|++....++.+...|.+.+++..+.+..-..-.|...++++++.+.+. .+.++.|.
T Consensus       103 d~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  103 DVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             hhhhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence            9865432 222222222223378999888999999999999999877765555555888999999999765 44455554


Q ss_pred             cEE
Q psy8448         258 TVK  260 (482)
Q Consensus       258 ~i~  260 (482)
                      .+.
T Consensus       181 ~L~  183 (615)
T KOG2247|consen  181 TLS  183 (615)
T ss_pred             HHH
Confidence            443

>KOG1896|consensus

Probab=93.15  E-value=13  Score=39.24  Aligned_cols=177  Identities=12%  Similarity=0.194  Sum_probs=94.7

Q ss_pred             eEEEEecCCCceeeccccccccccccccccEEEEEEcC---------CCCEEEEEeC---------CCcEEEEEcCC---
Q psy8448         123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR---------DSEMLASGSQ---------SGKVKIWKIAT---  181 (482)
Q Consensus       123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~---------~~~~l~~~~~---------dg~i~iwd~~~---  181 (482)
                      .|.+-+..+++.+..+....       .+.++++....         ...+|++|..         .|.+.|+|+-.   
T Consensus      1005 ~i~LisP~sw~vi~~iefq~-------~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVP 1077 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQE-------NEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVP 1077 (1366)
T ss_pred             eeEEecCCccccccccccCc-------cceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecC
Confidence            45555555555555544433       23455554422         1347887752         38899999732   


Q ss_pred             --Ce------EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC-CCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         182 --GQ------CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK-SGKMLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       182 --~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                        ++      ....+.....++|..++= -+| +|+++. ...|.+|+++ ....+.. .--.-++.-.....-.++|+.
T Consensus      1078 epgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~-GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~ 1153 (1366)
T KOG1896|consen 1078 EPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQ-GQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILA 1153 (1366)
T ss_pred             CCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEcc-CcEEEEEEeccCCcceee-EEeccceeEEehhhhhhheeh
Confidence              21      122222344556655543 245 455554 5679999994 4333221 101122222222334566777


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCE-EEEEeCCCeEEEEEc
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEH-FVVCNKTNTVVIMNM  310 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-l~~~~~d~~i~i~d~  310 (482)
                      |.--..|.+.-....-....+-......-.+.++.|.-+|.++ ++++..++.|++|-.
T Consensus      1154 gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1154 GDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred             hhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence            7766667666655432222222222344567888888888655 556778899998865

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.12  E-value=7.6  Score=36.36  Aligned_cols=150  Identities=14%  Similarity=0.178  Sum_probs=85.3

Q ss_pred             EEEEEeCCCcEEEEEcCCCeEeEEeeccc-CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccc-cceeEE
Q psy8448         164 MLASGSQSGKVKIWKIATGQCLRKLEKAH-SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS-SFVNDI  241 (482)
Q Consensus       164 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~l  241 (482)
                      .+.++..+|.|.-.|..++..+....... ...+..-.+..+|+ ++.++.++.++.+|.++++.+....... -.+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            46666788999999999888765442111 12222223333554 8888889999999999999888877555 111111


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC--CCeEEEEEc-CCcEEEE
Q psy8448         242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK--TNTVVIMNM-QGQIVRS  317 (482)
Q Consensus       242 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--d~~i~i~d~-~~~~~~~  317 (482)
                      ....++ .+..++.++.+...|..+++..-...........+..--...+  ..++.+..  ++.+.-.|. +|.....
T Consensus       149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~vy~~~~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS--GTVYVGSDGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec--ceEEEecCCCcceEEEEEccCCcEeee
Confidence            222233 3444547889999998888876664421100111111001112  34555544  555666666 5655544

>KOG4460|consensus

Probab=93.11  E-value=3.4  Score=39.15  Aligned_cols=76  Identities=13%  Similarity=0.185  Sum_probs=51.2

Q ss_pred             CeEEEEEccCCCEEEEEECCCeEEEEeC---------CCCceEEEee-----------ccccceeEEEEcCCC---CEEE
Q psy8448         195 GVTCIQFSRDNSQILTASFDTYVRIHGL---------KSGKMLKEFR-----------GHSSFVNDITFTADG---HSVL  251 (482)
Q Consensus       195 ~v~~i~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~-----------~~~~~i~~l~~~~~~---~~l~  251 (482)
                      .|..+..++.|..++.++.+|.+.++=.         +.++.....+           ...-.+...+|+|+.   ..|+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4677888999999999998987665432         2343221111           111235577899965   6788


Q ss_pred             EEeCCCcEEEEECCCCcee
Q psy8448         252 SASSDGTVKMWNLKTTECT  270 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~  270 (482)
                      .-+.|..|++||+.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            8889999999998765443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.11  E-value=6.9  Score=35.85  Aligned_cols=152  Identities=14%  Similarity=0.162  Sum_probs=86.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCe------EEEEecCCC-ceeecccccccc--------ccccccccEEEEEEcCCCCE
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGF------IEVWNFTTG-KIRKDLKYQAQD--------NFMLMEEAVMSLAYSRDSEM  164 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~------v~iwd~~~~-~~~~~~~~~~~~--------~~~~h~~~i~~l~~~~~~~~  164 (482)
                      -+.+..+.+.+++..+++-+.+|.      +...++... .....+......        .+..-.-..-+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788999975556666666676      555555431 011111110000        01001114557888778887


Q ss_pred             EEEEeCC------CcEEEEEcCCCeEeEEee--------------cccCCCeEEEEEccCCCEEEEEECCC---------
Q psy8448         165 LASGSQS------GKVKIWKIATGQCLRKLE--------------KAHSLGVTCIQFSRDNSQILTASFDT---------  215 (482)
Q Consensus       165 l~~~~~d------g~i~iwd~~~~~~~~~~~--------------~~~~~~v~~i~~~~~~~~l~~~~~dg---------  215 (482)
                      +++.-.+      ..|..++.. |+....+.              ...+...-.++++|+|+.|+++.+..         
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7776666      778888865 55544331              12345688999999999777654322         


Q ss_pred             -------eEEEEeCCC-CceEEE----eec-----cccceeEEEEcCCCCEEEE
Q psy8448         216 -------YVRIHGLKS-GKMLKE----FRG-----HSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       216 -------~i~i~d~~~-~~~~~~----~~~-----~~~~i~~l~~~~~~~~l~~  252 (482)
                             .|..||..+ ++....    +..     ....|..+.+.+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   234455554 322222    222     3567889999999986653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.00  E-value=1.3  Score=37.74  Aligned_cols=78  Identities=19%  Similarity=0.272  Sum_probs=52.0

Q ss_pred             EcCCCCEEEEEeCCCeEEEEecCCCceeecc-cccccccc-----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy8448         108 FSPDGQYLITGSVDGFIEVWNFTTGKIRKDL-KYQAQDNF-----MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT  181 (482)
Q Consensus       108 ~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~-----~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~  181 (482)
                      +..++++|++-+.+|.+++||+.+++..... ...+.-..     ......|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4446889999999999999999998765432 11110000     02356788888988887666654 57888998655


Q ss_pred             CeEeE
Q psy8448         182 GQCLR  186 (482)
Q Consensus       182 ~~~~~  186 (482)
                      +.-+.
T Consensus        97 ~~W~~  101 (219)
T PF07569_consen   97 GCWIR  101 (219)
T ss_pred             ceeEE
Confidence            44333

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.90  E-value=8.4  Score=36.26  Aligned_cols=105  Identities=12%  Similarity=0.139  Sum_probs=56.3

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---
Q psy8448         238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECT-STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ---  313 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~---  313 (482)
                      ...+..++++.+++.+.....++-||-  +... .....  .....+..+.+.+++ .++++ +..|.+..-+-.+.   
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~--~~~~~l~~v~~~~dg-~l~l~-g~~G~l~~S~d~G~~~~  314 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNR--ASARRIQNMGWRADG-GLWLL-TRGGGLYVSKGTGLTEE  314 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecC--CCccceeeeeEcCCC-CEEEE-eCCceEEEecCCCCccc
Confidence            344556677776665554333333442  2211 11111  345678899999887 55554 45666554443443   


Q ss_pred             --EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         314 --IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       314 --~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                        .+...... .....+..+.|.+++..+ .++.+|.+.
T Consensus       315 ~~~f~~~~~~-~~~~~l~~v~~~~d~~~~-a~G~~G~v~  351 (398)
T PLN00033        315 DFDFEEADIK-SRGFGILDVGYRSKKEAW-AAGGSGILL  351 (398)
T ss_pred             ccceeecccC-CCCcceEEEEEcCCCcEE-EEECCCcEE
Confidence              22222221 113458889999887655 455667666

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.85  E-value=6.6  Score=37.47  Aligned_cols=63  Identities=19%  Similarity=0.152  Sum_probs=39.9

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCC
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS  162 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~  162 (482)
                      .-..-+.|+|.|||++|++--..|.|++++..++............ ....+.....|+++|+-
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~-~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV-NDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee-ccCCCCceeeEEECCCc
Confidence            3456789999999988877654699999986654322211111100 00125778999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.84  E-value=0.93  Score=38.57  Aligned_cols=65  Identities=15%  Similarity=0.218  Sum_probs=43.7

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe------ec-------ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC
Q psy8448         158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKL------EK-------AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK  223 (482)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~-------~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~  223 (482)
                      +..++++|++.+.+|.+++||+.+++.+..-      ..       .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            3446889999999999999999988764322      01       2344567777776666555444 5667777653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2247|consensus

Probab=92.66  E-value=0.012  Score=54.00  Aligned_cols=149  Identities=11%  Similarity=0.181  Sum_probs=100.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEE
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~  230 (482)
                      ......|-|.+.-++.++.+..+..|| +.++.....  ...+....++|..++..++ .+-..+.+.+||+.+.... .
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-q  111 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILEL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-Q  111 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhh-hhcceeccc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-H
Confidence            344566888776688888888899999 344444433  3455677888888776654 4566789999999654321 1


Q ss_pred             ee-ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         231 FR-GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       231 ~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                      +. +....-.-+.|++....++.+...|.+.+++..+.+.+....   .|...+.++++.+.+  +.+.++.|..+.+-.
T Consensus       112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G---kh~RRgtq~av~lEd--~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG---KHQRRGTQIAVTLED--YVILCDCDNTLSVTT  186 (615)
T ss_pred             HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc---ccccceeEEEecccc--eeeecCcHHHHHHhh
Confidence            11 111111227888888889999899999999988766544442   378889999999975  556666555444433

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.42  E-value=8.6  Score=35.23  Aligned_cols=146  Identities=19%  Similarity=0.324  Sum_probs=85.0

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCc------EEEEEcCC--C--eEe-----EEeecccCC-------CeEEEEEccCCCEE
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGK------VKIWKIAT--G--QCL-----RKLEKAHSL-------GVTCIQFSRDNSQI  208 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~~-------~v~~i~~~~~~~~l  208 (482)
                      +.+..+.+.+++..+++.+.+|.      +..+++..  +  ..+     ..+......       ..-+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            56888999976666777777777      66555543  1  001     111111111       34478887788877


Q ss_pred             EEEECC------CeEEEEeCCCCceEEEee---------------ccccceeEEEEcCCCCEEEEEeC-----CC--c--
Q psy8448         209 LTASFD------TYVRIHGLKSGKMLKEFR---------------GHSSFVNDITFTADGHSVLSASS-----DG--T--  258 (482)
Q Consensus       209 ~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~i~~l~~~~~~~~l~~~~~-----dg--~--  258 (482)
                      ++.-.+      ..|..++.. ++....+.               .......+|+++|+|+.|+++..     |+  .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            777667      789999976 65544331               13445789999999997766543     22  1  


Q ss_pred             -----EEE--EECCC-CceeeeeeccCC------CccceeEEEEcCCCCCEEEE
Q psy8448         259 -----VKM--WNLKT-TECTSTFKSLGA------SDIAVNSIHLLPKNTEHFVV  298 (482)
Q Consensus       259 -----i~i--~d~~~-~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~l~~  298 (482)
                           +++  ||..+ ++....+.....      ....+..+.+.+++ .+++.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvL  231 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVL  231 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEE
Confidence                 444  44444 222232221111      35677788888887 45444

>KOG2280|consensus

Probab=92.41  E-value=13  Score=37.19  Aligned_cols=173  Identities=15%  Similarity=0.201  Sum_probs=90.4

Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe----eccccceeEEEEcCCC
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF----RGHSSFVNDITFTADG  247 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~i~~l~~~~~~  247 (482)
                      -.|+|+++ +|..+..+.-.| ..+-.+.|+.+. .|++...+|.+++|++-. +.+...    ......|..+.+..+|
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~-~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKH-GELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             eeEEEEec-cccchHHHHhcC-CCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence            46888885 566666653334 378899999665 567777899999999843 322221    1223345555555455


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCe--EEEEEcC--CcEEEEecCCcc
Q psy8448         248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT--VVIMNMQ--GQIVRSLSSGKR  323 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~--i~i~d~~--~~~~~~~~~~~~  323 (482)
                        +++-..+|.+.+-+-.......+++.......+-.+.+..+++......-.-+-.  ..++-.+  ......+...  
T Consensus       140 --Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~--  215 (829)
T KOG2280|consen  140 --VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP--  215 (829)
T ss_pred             --eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC--
Confidence              4444445555544322222333333322333333444444432111111111100  0111111  1111122211  


Q ss_pred             cCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       324 ~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                       ...+..+..||+.++|+-=...|.+.+=+
T Consensus       216 -~~~~~ki~VS~n~~~laLyt~~G~i~~vs  244 (829)
T KOG2280|consen  216 -NSSVVKISVSPNRRFLALYTETGKIWVVS  244 (829)
T ss_pred             -CceEEEEEEcCCcceEEEEecCCcEEEEe
Confidence             35678899999999999999999988543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.20  E-value=0.96  Score=41.73  Aligned_cols=171  Identities=13%  Similarity=0.090  Sum_probs=96.8

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE-EEEEcCCCCEEEEEeCCCcE
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM-SLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~-~l~~~~~~~~l~~~~~dg~i  174 (482)
                      +..-...|..+-..|||+.|..-+. .++.++++.+......--......  .....|+ .+..-..|.-++++..||.|
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg--~~~~~Vte~l~lL~Gg~SLLv~~~dG~v  292 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG--DSRHQVTEQLYLLSGGFSLLVVHEDGLV  292 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC--chHHHHHHHHHHHhCceeEEEEcCCCce
Confidence            3345567888999999999877654 678999887654332211110000  0001122 22223355668888889888


Q ss_pred             EEE-EcCCCeE-----eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         175 KIW-KIATGQC-----LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       175 ~iw-d~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      .-| |.+.+..     ++.+ +-...++..+.-..+.+-+++-..+|++.++.-...+.+.. ..--..+..++++|.+.
T Consensus       293 sQWFdvr~~~~p~l~h~R~f-~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~  370 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNF-KLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQA  370 (733)
T ss_pred             eeeeeeecCCCCcceeeecc-ccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccc
Confidence            766 5543321     1111 11223333333322344566777788887776544433322 22223567789999999


Q ss_pred             EEEEEeCCCcEEEEECCCCceeee
Q psy8448         249 SVLSASSDGTVKMWNLKTTECTST  272 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~~~~~  272 (482)
                      ++++-. .|.++++.+++..+..+
T Consensus       371 ~Ll~e~-~gki~~~~l~Nr~Peis  393 (733)
T COG4590         371 YLLSED-QGKIRLAQLENRNPEIS  393 (733)
T ss_pred             hheeec-CCceEEEEecCCCCCcc
Confidence            887654 56799999887654433

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.42  E-value=7.9  Score=34.34  Aligned_cols=104  Identities=11%  Similarity=0.224  Sum_probs=62.0

Q ss_pred             CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeeeeec-c-CCCccceeEE
Q psy8448         215 TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS------SDGTVKMWNLKTTECTSTFKS-L-GASDIAVNSI  286 (482)
Q Consensus       215 g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-~-~~~~~~v~~i  286 (482)
                      ..|++||..+.+-...-.+-.+.|++|.|..+.+.++.|.      ....+..||+.+... ..+.. . ..-..++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            4699999877765554455678899999986666666654      345688999887643 22221 0 1224678887


Q ss_pred             EEcCCCC-CEEEEEe-CCCeEEEEEcCCcEEEEec
Q psy8448         287 HLLPKNT-EHFVVCN-KTNTVVIMNMQGQIVRSLS  319 (482)
Q Consensus       287 ~~~~~~~-~~l~~~~-~d~~i~i~d~~~~~~~~~~  319 (482)
                      .+..... .++++|. .++.-.+...+|.....+.
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~  129 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG  129 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEecc
Confidence            7754332 4555544 4444444444444444443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.27  E-value=21  Score=37.26  Aligned_cols=210  Identities=11%  Similarity=0.119  Sum_probs=0.0

Q ss_pred             CCcEEEEEEc-------CCCCEEEEEeCCCeEEEE------ecCCCceeeccccccccccccc---cccEEEEEEcC-CC
Q psy8448         100 KSHVECARFS-------PDGQYLITGSVDGFIEVW------NFTTGKIRKDLKYQAQDNFMLM---EEAVMSLAYSR-DS  162 (482)
Q Consensus       100 ~~~v~~~~~s-------~~~~~l~s~~~dg~v~iw------d~~~~~~~~~~~~~~~~~~~~h---~~~i~~l~~~~-~~  162 (482)
                      ..+|..|+|.       +..++|++=....+..+-      -.........+.......+..+   ..+...++|+| +.
T Consensus        79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~  158 (765)
T PF10214_consen   79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ  158 (765)
T ss_pred             CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc


Q ss_pred             CEEEEEeCCCcEEEEEc----CCCeEeEEeecccCCCe------E----EEEEccCCCEEEEEECCCeEEEEeCCCCce-
Q psy8448         163 EMLASGSQSGKVKIWKI----ATGQCLRKLEKAHSLGV------T----CIQFSRDNSQILTASFDTYVRIHGLKSGKM-  227 (482)
Q Consensus       163 ~~l~~~~~dg~i~iwd~----~~~~~~~~~~~~~~~~v------~----~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-  227 (482)
                      ..||+....|...||++    ..............+.+      .    .+.|.++...|++++ ...+.++|+++... 
T Consensus       159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~~~  237 (765)
T PF10214_consen  159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNWQT  237 (765)
T ss_pred             ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCCcc


Q ss_pred             -EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeeeeeccCCCccceeEEEEcCC-CCCEEEE--E
Q psy8448         228 -LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT----TECTSTFKSLGASDIAVNSIHLLPK-NTEHFVV--C  299 (482)
Q Consensus       228 -~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~--~  299 (482)
                       .-........|..+.-+|...-.+..-....|...++..    .+.+..++.....+.+-..+..... +..+++.  .
T Consensus       238 ~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~~~~~~~~~~~lyS  317 (765)
T PF10214_consen  238 EYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQKVGDTDFVVFLYS  317 (765)
T ss_pred             chhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeecccccCCCCCceEEEEEEcCCCEEEEEEEc


Q ss_pred             eCCCeEEEEEc
Q psy8448         300 NKTNTVVIMNM  310 (482)
Q Consensus       300 ~~d~~i~i~d~  310 (482)
                      .....|.+|.+
T Consensus       318 ~~~~~v~v~~f  328 (765)
T PF10214_consen  318 RLNPLVYVYFF  328 (765)
T ss_pred             CCCCcEEEEEE

These proteins are found in fungi.

>PLN02193 nitrile-specifier protein

Probab=91.14  E-value=16  Score=35.61  Aligned_cols=107  Identities=7%  Similarity=0.034  Sum_probs=54.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCCeEeEEeec---ccCCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCCce
Q psy8448         161 DSEMLASGSQS-----GKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSGKM  227 (482)
Q Consensus       161 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~  227 (482)
                      ++...+.|+.+     ..+..+|+.+.+....-..   +....-.+++. -+++.++.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45566667654     3588899887654332111   11111122222 2556666776543     467888876543


Q ss_pred             EEEee-----ccccceeEEEEcCCCCEEEEEeCC----CcEEEEECCCCcee
Q psy8448         228 LKEFR-----GHSSFVNDITFTADGHSVLSASSD----GTVKMWNLKTTECT  270 (482)
Q Consensus       228 ~~~~~-----~~~~~i~~l~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~  270 (482)
                      ...-.     ...... .++. -+++.++.++.+    ..+.+||+.+.+-.
T Consensus       307 ~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~  356 (470)
T PLN02193        307 FHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWT  356 (470)
T ss_pred             EeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence            21110     011111 1222 256677776654    45899999886543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.08  E-value=12  Score=34.22  Aligned_cols=109  Identities=12%  Similarity=0.080  Sum_probs=53.3

Q ss_pred             CCCEEEEEeCC-----CeEEEEecCCCcee---eccccccccccccccccEEEEEEcCCCCEEEEEeC-----CCcEEEE
Q psy8448         111 DGQYLITGSVD-----GFIEVWNFTTGKIR---KDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-----SGKVKIW  177 (482)
Q Consensus       111 ~~~~l~s~~~d-----g~v~iwd~~~~~~~---~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-----dg~i~iw  177 (482)
                      ++.+++.|+.+     ..+..+|+.+.+..   .....-+. .    .... +++. -+++..+.|+.     ...+..|
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~-~----~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~y  144 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPF-T----FENG-SACY-KDGTLYVGGGNRNGKPSNKSYLF  144 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCc-C----ccCc-eEEE-ECCEEEEEeCcCCCccCceEEEE
Confidence            45666777754     35777777765531   11111000 0    0111 1222 24566666664     2368888


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC----eEEEEeCCCCc
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT----YVRIHGLKSGK  226 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~  226 (482)
                      |+.+.+-...-...........+...+++..+.|+.++    .+.+||+++.+
T Consensus       145 d~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       145 NLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             cCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            88766533211001111222222333667777777654    35688887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.91  E-value=10  Score=32.99  Aligned_cols=152  Identities=13%  Similarity=0.124  Sum_probs=99.1

Q ss_pred             CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q psy8448         193 SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTST  272 (482)
Q Consensus       193 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  272 (482)
                      ...-..++-.|||..-+++...+.|--.|.++++....--+.......+...||+..-++-+.. .|.-.|-++.+. .+
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~  138 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TR  138 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EE
Confidence            3445667788899888888888888889999998877666667777889999999866654443 566677766653 23


Q ss_pred             eec-cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         273 FKS-LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       273 ~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      |.. ............|.+.| .+.+++... .---.|.....+..+....  ......++..|||..-++.-.++.|-
T Consensus       139 f~lp~~~a~~nlet~vfD~~G-~lWFt~q~G-~yGrLdPa~~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaia  213 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWG-NLWFTGQIG-AYGRLDPARNVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIA  213 (353)
T ss_pred             eecccccCCCcccceeeCCCc-cEEEeeccc-cceecCcccCceeeeccCC--CCCCcceEECCCCcEEEEeccccceE
Confidence            322 22334567788899998 777776532 1111122233334443332  33446788899998877766665555

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.72  E-value=11  Score=33.30  Aligned_cols=228  Identities=11%  Similarity=0.076  Sum_probs=125.7

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCC-------ceeeccccccccccccccccEEEEEEcCCCC-----------
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTG-------KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE-----------  163 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-----------  163 (482)
                      .-+.|+++|.+.+-++....+...+||....       .+...+......   .-....+.+.|+....           
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~---~~~~~PTGiVfN~~~~F~vt~~g~~~~  100 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPL---AAEGTPTGQVFNGSDTFVVSGEGITGP  100 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCC---CCCCCccEEEEeCCCceEEcCCCcccc
Confidence            3578999999988888888899999998611       112222211100   0134577778875332           


Q ss_pred             -EEEEEeCCCcEEEEEcCCCeE-----eEEeecccCCC-eEEEEEcc--CCCEEEEE-ECCCeEEEEeCCCCceEEE---
Q psy8448         164 -MLASGSQSGKVKIWKIATGQC-----LRKLEKAHSLG-VTCIQFSR--DNSQILTA-SFDTYVRIHGLKSGKMLKE---  230 (482)
Q Consensus       164 -~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~-v~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~---  230 (482)
                       .++.+++||+|.-|...-+..     ...+....... -..+++..  .+.+|..+ -..++|.++|-.-. .+..   
T Consensus       101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~-~~~~~g~  179 (336)
T TIGR03118       101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR-PPPLPGS  179 (336)
T ss_pred             eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc-cccCCCC
Confidence             367888999999998532222     12221121222 33455543  34555444 45688999885322 2111   


Q ss_pred             eecc----------------ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC---
Q psy8448         231 FRGH----------------SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK---  291 (482)
Q Consensus       231 ~~~~----------------~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~---  291 (482)
                      +...                .-.|+-..-.++.+.=+.+..-|.|-+||+. ++.++++..- +.-..-+.|+..|.   
T Consensus       180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNAPWGLAIAPESFG  257 (336)
T ss_pred             ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccCCceeeeChhhhC
Confidence            1100                0001111112222222334445789999976 6667766422 22334466777653   


Q ss_pred             --CCCEEEEEeCCCeEEEEEc-CCcEEEEecCCccc---CcCEEEEEEcC
Q psy8448         292 --NTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKRE---GGDFLCCTTSP  335 (482)
Q Consensus       292 --~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~---~~~v~~~~~~~  335 (482)
                        ...+|+---.||+|..||. .++.+-.+......   ...++.++|..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence              2256666668999999998 57766666654321   23456777765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.66  E-value=11  Score=32.85  Aligned_cols=238  Identities=11%  Similarity=0.002  Sum_probs=140.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      ....-..++-.|||..-.++...+.|--.|..+|+....--..        -.....+..-||+..-++-+.. -|.-.|
T Consensus        60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~--------Ga~Phgiv~gpdg~~Witd~~~-aI~R~d  130 (353)
T COG4257          60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGS--------GASPHGIVVGPDGSAWITDTGL-AIGRLD  130 (353)
T ss_pred             CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCC--------CCCCceEEECCCCCeeEecCcc-eeEEec
Confidence            3455677888999999999888888888888888754322211        2345667777887765554333 455556


Q ss_pred             cCCCeEeE-Eeec-ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec-cccceeEEEEcCCCCEEEEEeC
Q psy8448         179 IATGQCLR-KLEK-AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG-HSSFVNDITFTADGHSVLSASS  255 (482)
Q Consensus       179 ~~~~~~~~-~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~  255 (482)
                      -++.+... .+.. ..........|.+.|..-+++. .|.---.|..+ ..+..+.. .......|+..|+|..-++.-.
T Consensus       131 pkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyasla  208 (353)
T COG4257         131 PKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLA  208 (353)
T ss_pred             CcccceEEeecccccCCCcccceeeCCCccEEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEecc
Confidence            55544322 1111 2234577888999998777765 22211112211 12233332 2345678999999998888777


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcC
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  335 (482)
                      +..|-..|..++. ...+............+--+|.+ ..-++....+.+..+|........+.-... ...-.++....
T Consensus       209 gnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD~  285 (353)
T COG4257         209 GNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVDR  285 (353)
T ss_pred             ccceEEcccccCC-cceecCCCcccccccccccCccC-cEEEeccCCceeeEeCcccccceeeeCCCC-CCCcceeeecc
Confidence            7888888887763 33333222323445566667777 677777777888888875443333332211 23345566666


Q ss_pred             CCCEEEEEeCCcEEE
Q psy8448         336 RGEWIYCVGEDMVLV  350 (482)
Q Consensus       336 ~g~~l~~~~~dg~i~  350 (482)
                      .++.-.+--..|.|.
T Consensus       286 ~grVW~sea~agai~  300 (353)
T COG4257         286 HGRVWLSEADAGAIG  300 (353)
T ss_pred             CCcEEeeccccCcee
Confidence            665555444445555

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.48  E-value=13  Score=33.38  Aligned_cols=195  Identities=10%  Similarity=0.158  Sum_probs=101.9

Q ss_pred             cEEEEEEcCCCCEEEE--Ee---C-------CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCC-----CE
Q psy8448         102 HVECARFSPDGQYLIT--GS---V-------DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS-----EM  164 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s--~~---~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-----~~  164 (482)
                      .|..+...+++.+-+.  |.   .       .-.|.+||+.+++.++++..+.....  ..+....+.+....     .+
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~--~~s~lndl~VD~~~~~~~~~~   79 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAP--PDSFLNDLVVDVRDGNCDDGF   79 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcc--cccccceEEEEccCCCCcceE
Confidence            3666777776665553  21   0       13799999999998888776643221  24677888887622     23


Q ss_pred             EEEEe-CCCcEEEEEcCCCeEeEEeec------------------ccCCCeEEEEEcc---CCCEEEEEECCC-eEEEEe
Q psy8448         165 LASGS-QSGKVKIWKIATGQCLRKLEK------------------AHSLGVTCIQFSR---DNSQILTASFDT-YVRIHG  221 (482)
Q Consensus       165 l~~~~-~dg~i~iwd~~~~~~~~~~~~------------------~~~~~v~~i~~~~---~~~~l~~~~~dg-~i~i~d  221 (482)
                      +..+. ..+-|.|+|+.+++..+.+..                  .....+..++.+|   +++.|..+...+ .++-..
T Consensus        80 aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~  159 (287)
T PF03022_consen   80 AYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVP  159 (287)
T ss_dssp             EEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEE
T ss_pred             EEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEE
Confidence            33333 346899999998876655421                  0112244555544   444555444332 122211


Q ss_pred             C---CCCc---------eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeeeeeccCCCccceeEE
Q psy8448         222 L---KSGK---------MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE---CTSTFKSLGASDIAVNSI  286 (482)
Q Consensus       222 ~---~~~~---------~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~v~~i  286 (482)
                      .   ++..         .+..+-........++++++|..+++--..+.|..|+....-   ....+..-...-..+..+
T Consensus       160 T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~  239 (287)
T PF03022_consen  160 TSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGL  239 (287)
T ss_dssp             HHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEE
T ss_pred             HHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecccee
Confidence            1   1110         111221112356788999999988888889999999988622   122222111112456777


Q ss_pred             EEcC--CCCCEEEEE
Q psy8448         287 HLLP--KNTEHFVVC  299 (482)
Q Consensus       287 ~~~~--~~~~~l~~~  299 (482)
                      .+.+  ++ .+.+.+
T Consensus       240 ~i~~~~~g-~L~v~s  253 (287)
T PF03022_consen  240 KIDPEGDG-YLWVLS  253 (287)
T ss_dssp             EE-T--TS--EEEEE
T ss_pred             eeccccCc-eEEEEE
Confidence            7777  55 444443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.38  E-value=16  Score=34.43  Aligned_cols=148  Identities=12%  Similarity=0.124  Sum_probs=83.7

Q ss_pred             eEEEEEccCCCEEEEEECCCeEEEEeCCCCce--EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--e
Q psy8448         196 VTCIQFSRDNSQILTASFDTYVRIHGLKSGKM--LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECT--S  271 (482)
Q Consensus       196 v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~  271 (482)
                      ...+..++++.+++++.....++-||  .++.  ...-......+.++.+.+++..++++ ..|.+. +....++.-  .
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            34455667777666665433333344  2322  11122345568899999998877655 556543 344444311  1


Q ss_pred             eeeccC--CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE
Q psy8448         272 TFKSLG--ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL  349 (482)
Q Consensus       272 ~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i  349 (482)
                      .+....  .....+..+.+.+++  .+++++..|.+....-.|+..........-...++.+.|.++++.+ +.+.+|.|
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~-~~G~~G~i  393 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKK--EAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGF-VLGNDGVL  393 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCC--cEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceE-EEeCCcEE
Confidence            222111  123458889998875  4566667777766655666655544222224567899987765554 45667776


Q ss_pred             E
Q psy8448         350 V  350 (482)
Q Consensus       350 ~  350 (482)
                      .
T Consensus       394 l  394 (398)
T PLN00033        394 L  394 (398)
T ss_pred             E
Confidence            6

>PLN02153 epithiospecifier protein

Probab=90.30  E-value=15  Score=33.95  Aligned_cols=105  Identities=8%  Similarity=0.110  Sum_probs=50.5

Q ss_pred             CCEEEEEeCC-------CcEEEEEcCCCeEeEEeeccc-CC----CeEEEEEccCCCEEEEEECC-----CeEEEEeCCC
Q psy8448         162 SEMLASGSQS-------GKVKIWKIATGQCLRKLEKAH-SL----GVTCIQFSRDNSQILTASFD-----TYVRIHGLKS  224 (482)
Q Consensus       162 ~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~-~~----~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~  224 (482)
                      +..++.|+.+       ..+.+||+.+.+-...-.... ..    ....+++  ++..++.|+.+     ..+.+||+++
T Consensus        33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence            4555555542       257788887764332110000 00    1222222  45666777653     3578899876


Q ss_pred             CceE--EEeec---cccc-eeEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCce
Q psy8448         225 GKML--KEFRG---HSSF-VNDITFTADGHSVLSASSD-----------GTVKMWNLKTTEC  269 (482)
Q Consensus       225 ~~~~--~~~~~---~~~~-i~~l~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~  269 (482)
                      .+-.  ..+..   .... -.+++. -+++.++.|+.+           ..+.+||.++.+-
T Consensus       111 ~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W  171 (341)
T PLN02153        111 NEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW  171 (341)
T ss_pred             CEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence            5432  11110   0111 112222 345666666643           2477888887543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.16  E-value=9.7  Score=31.58  Aligned_cols=106  Identities=15%  Similarity=0.063  Sum_probs=61.6

Q ss_pred             CCCEEEEEeC--CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEE-EEEECCCeEEEEeCCCCceEEEeeccccc
Q psy8448         161 DSEMLASGSQ--SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQI-LTASFDTYVRIHGLKSGKMLKEFRGHSSF  237 (482)
Q Consensus       161 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  237 (482)
                      +|.++.+.+.  ...|++||+.+++.+...... ...+..--...-+..+ ...-.+|.-..+|.++.+++..+. ..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~Ge  132 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGE  132 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCc
Confidence            4556666553  347999999999877665322 1111111111112222 334457888899999888887766 3334


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q psy8448         238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECT  270 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  270 (482)
                      =..++.  |+..|+.++...+++.-|.++....
T Consensus       133 GWgLt~--d~~~LimsdGsatL~frdP~tfa~~  163 (262)
T COG3823         133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFAEL  163 (262)
T ss_pred             ceeeec--CCcceEeeCCceEEEecCHHHhhhc
Confidence            455654  4555776666667777776654433

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.02  E-value=18  Score=34.58  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=60.9

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eeeeecc--CCCccceeEEEEcCCC-----CCEEEEEe-C---
Q psy8448         235 SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC--TSTFKSL--GASDIAVNSIHLLPKN-----TEHFVVCN-K---  301 (482)
Q Consensus       235 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~--~~~~~~v~~i~~~~~~-----~~~l~~~~-~---  301 (482)
                      -.....|+|.|++++|++--..|.|++++..++..  +..+...  .........|+++|+-     ..++.+.. .   
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            44578999999998666554469999998665432  2122111  0135678899999873     12333332 1   


Q ss_pred             ------CCeEEEEEcCC--------cE-EEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         302 ------TNTVVIMNMQG--------QI-VRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       302 ------d~~i~i~d~~~--------~~-~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                            ...|.-|.+..        +. +..+....  ...-..++|.|||.+.++.++.
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~--~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN--DHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCC--CcCCceEEECCCCcEEEEECCC
Confidence                  23344454421        11 11111111  1223568899999877765554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.99  E-value=13  Score=32.72  Aligned_cols=194  Identities=9%  Similarity=0.053  Sum_probs=110.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      .+-+..+.++  +++...+..+.-++|.|+.+......+..-.      ..+-..++..  .|++...+..|.-+.+.|+
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln------t~gyaygv~v--sGn~aYVadlddgfLivdv  155 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLN------TDGYAYGVYV--SGNYAYVADLDDGFLIVDV  155 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceecccc------CCceEEEEEe--cCCEEEEeeccCcEEEEEC
Confidence            4566777787  4466666666679999998765433222111      0123344444  4888888886777888898


Q ss_pred             CCCeE---eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe--eccccceeEEEEcCCCCEEEEEe
Q psy8448         180 ATGQC---LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF--RGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       180 ~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      .+...   ..++ .........++.+  |++-..+..|+-+.+.|+.+.....-+  ......+.++..+++..+++.. 
T Consensus       156 sdpssP~lagry-a~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-  231 (370)
T COG5276         156 SDPSSPQLAGRY-ALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-  231 (370)
T ss_pred             CCCCCceeeeee-ccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc-
Confidence            76542   3333 2233334566664  778888889999999999765432211  1123357777777665544433 


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEE-EEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSI-HLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i-~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                      .. -+.+-|..+.+....+....  ...+.++ .+.-.+ ++......+.-+.+-|..
T Consensus       232 ~e-gvlivd~s~~ssp~~~gsye--t~~p~~~s~v~Vs~-~~~Yvadga~gl~~idis  285 (370)
T COG5276         232 DE-GVLIVDVSGPSSPTVFGSYE--TSNPVSISTVPVSG-EYAYVADGAKGLPIIDIS  285 (370)
T ss_pred             cc-ceEEEecCCCCCceEeeccc--cCCcccccceeccc-ceeeeeccccCceeEecc
Confidence            23 47778877766444443211  1122222 122222 455555555556666653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.99  E-value=4.3  Score=37.73  Aligned_cols=162  Identities=10%  Similarity=0.149  Sum_probs=91.5

Q ss_pred             ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE-EEe-eccc----ccee-EEEEcCCCCEEEEEeCCCcEEEE-
Q psy8448         191 AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML-KEF-RGHS----SFVN-DITFTADGHSVLSASSDGTVKMW-  262 (482)
Q Consensus       191 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-~~~~----~~i~-~l~~~~~~~~l~~~~~dg~i~i~-  262 (482)
                      .....+..+-..|+|+.+.+-+. ..+.++++.+.... .++ ....    ..|+ .+..-..|..+++++.||.|.-| 
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            34556778889999998887664 67888888654321 111 1111    1122 22223356678888899988776 


Q ss_pred             ECCCCce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEE
Q psy8448         263 NLKTTEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWI  340 (482)
Q Consensus       263 d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l  340 (482)
                      |.+.+..  ....+...-...++..+.-. +..+-+++-+..|++..+........-+...   -..+.-+++||.+.++
T Consensus       297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~~~Sp~~~~L  372 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLVAMSPNQAYL  372 (733)
T ss_pred             eeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhhh---hcCcceeeeCcccchh
Confidence            5544321  11111111222333333222 2235677778888888777643333222222   2245568999999998


Q ss_pred             EEEeCCcEEEEEeehhhh
Q psy8448         341 YCVGEDMVLVVRLIQQYL  358 (482)
Q Consensus       341 ~~~~~dg~i~iw~~~~~~  358 (482)
                      ++ -+.|.++++.+++..
T Consensus       373 l~-e~~gki~~~~l~Nr~  389 (733)
T COG4590         373 LS-EDQGKIRLAQLENRN  389 (733)
T ss_pred             ee-ecCCceEEEEecCCC
Confidence            75 455788888776543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=89.73  E-value=16  Score=33.43  Aligned_cols=106  Identities=8%  Similarity=0.127  Sum_probs=53.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCCeEe---EEeecccCCCe--EEEEEccCCCEEEEEEC-----CCeEEEEeCCCC
Q psy8448         161 DSEMLASGSQS-----GKVKIWKIATGQCL---RKLEKAHSLGV--TCIQFSRDNSQILTASF-----DTYVRIHGLKSG  225 (482)
Q Consensus       161 ~~~~l~~~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~~v--~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~  225 (482)
                      ++..++.|+.+     ..+..+|+.+.+..   ..+ ..-..+.  .+++. -++...+.|+.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~-~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETI-GNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEc-CCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            45666777754     35667777665531   121 1111111  12222 25666666664     246888998765


Q ss_pred             ceEE--EeeccccceeEEEEcCCCCEEEEEeCCC----cEEEEECCCCce
Q psy8448         226 KMLK--EFRGHSSFVNDITFTADGHSVLSASSDG----TVKMWNLKTTEC  269 (482)
Q Consensus       226 ~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~dg----~i~i~d~~~~~~  269 (482)
                      +-..  .+.. .......+...+++..+.|+.++    .+.+||.++.+-
T Consensus       150 ~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       150 EWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            4322  1211 11112222233567777777653    356888887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.52  E-value=11  Score=31.47  Aligned_cols=102  Identities=16%  Similarity=0.195  Sum_probs=62.3

Q ss_pred             CEEEEEeCCCcEEEEEcCCC--eEeEEeecccCCCeEEEEEccCCCEEEEEECCC------eEEEE-eCCC----CceEE
Q psy8448         163 EMLASGSQSGKVKIWKIATG--QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT------YVRIH-GLKS----GKMLK  229 (482)
Q Consensus       163 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg------~i~i~-d~~~----~~~~~  229 (482)
                      +.|+.+...+.|.+|++.+.  +....+  .--+.|..++++..|++|++--.+.      .+++| +.+.    .+++.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            34544466678999999833  445555  3447899999999999999864332      56664 2221    11111


Q ss_pred             -Eeec---------------------cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy8448         230 -EFRG---------------------HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT  267 (482)
Q Consensus       230 -~~~~---------------------~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~  267 (482)
                       .+-|                     -..++.+++..|-..-|++|+. +.+.+|.+...
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~  165 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ  165 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence             1111                     2446778888884444666654 57889987654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.36  E-value=3  Score=34.04  Aligned_cols=30  Identities=23%  Similarity=0.351  Sum_probs=24.6

Q ss_pred             cEEEEEEcCCC------CEEEEEeCCCcEEEEEcCC
Q psy8448         152 AVMSLAYSRDS------EMLASGSQSGKVKIWKIAT  181 (482)
Q Consensus       152 ~i~~l~~~~~~------~~l~~~~~dg~i~iwd~~~  181 (482)
                      .+..++|||.|      -+|++.+.++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78999999944      3688888999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=89.33  E-value=12  Score=37.58  Aligned_cols=97  Identities=12%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             EEEEEccCCCEEEEEECCC-----eEEEEeCCCCceEEEe---eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy8448         197 TCIQFSRDNSQILTASFDT-----YVRIHGLKSGKMLKEF---RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE  268 (482)
Q Consensus       197 ~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~  268 (482)
                      ..+.|-|+|..+++-..||     .|.++.. +|-.-..+   .+.......++|+.....++. ...+.+.+|-..+-.
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceE
Confidence            4588999999999877665     4555553 22111111   123344567777765554443 345679999877654


Q ss_pred             eeeeeeccCCCccceeEEEEcCCCCCEEEE
Q psy8448         269 CTSTFKSLGASDIAVNSIHLLPKNTEHFVV  298 (482)
Q Consensus       269 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  298 (482)
                      ......   ..-..+.-+.|+|.....++.
T Consensus       328 WYLK~e---~~ip~~s~vkwhpe~~nTl~f  354 (1243)
T COG5290         328 WYLKVE---RQIPGISYVKWHPEEKNTLLF  354 (1243)
T ss_pred             EEEEEe---ecCCCcceeeeccccCcEEEE
Confidence            333222   223345667888876444433

>KOG1900|consensus

Probab=88.85  E-value=6.8  Score=41.63  Aligned_cols=140  Identities=18%  Similarity=0.238  Sum_probs=85.1

Q ss_pred             ECCCeEEEEeCCCCceEEEeeccccceeEEEEc-C-------CCCEEEEEeCCCcEEEEECCCCcee-------eeeecc
Q psy8448         212 SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFT-A-------DGHSVLSASSDGTVKMWNLKTTECT-------STFKSL  276 (482)
Q Consensus       212 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~-~-------~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~  276 (482)
                      +.|+.+.+|+.+++.....+.+....|..+..- |       .=+++++.+.--.|.++-+.-.+..       ..+. +
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i  174 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I  174 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence            348899999999988788887777777766542 2       2234444444444555543221110       0111 1


Q ss_pred             CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--C------CcE--------------EEEecCCc-ccCcCEEEEEE
Q psy8448         277 GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--Q------GQI--------------VRSLSSGK-REGGDFLCCTT  333 (482)
Q Consensus       277 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~------~~~--------------~~~~~~~~-~~~~~v~~~~~  333 (482)
                      ...+..|+++....+| +.|++|-.+ .  +|.+  +      ++.              +..+.... .+..+|..++.
T Consensus       175 ~~dg~~V~~I~~t~nG-RIF~~G~dg-~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I  250 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENG-RIFFAGRDG-N--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI  250 (1311)
T ss_pred             ecCCceEEEEEeccCC-cEEEeecCC-C--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence            1346678899866666 666655544 3  4433  1      111              11111111 23668999999


Q ss_pred             cCCCCEEEEEeCCcEEEEEeehh
Q psy8448         334 SPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       334 ~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      ......+++-++.|.+.+|++..
T Consensus       251 D~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  251 DNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccccceeeeeccCceEEEEEccC
Confidence            99999999999999999998874

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.85  E-value=24  Score=34.35  Aligned_cols=186  Identities=14%  Similarity=0.206  Sum_probs=0.0

Q ss_pred             CCCCEEEEE---eCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeE
Q psy8448         110 PDGQYLITG---SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR  186 (482)
Q Consensus       110 ~~~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  186 (482)
                      .++-+++..   ...+...+.| .+|.....+...        ......+...++|.+++...  ..+..+|+ .|+.+.
T Consensus       113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~--------~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~  180 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLD--------SGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIW  180 (477)
T ss_dssp             TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GG--------GT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEE
T ss_pred             CCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccC--------ccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEE


Q ss_pred             Eeeccc--CCCeEEEEEccCCCEEEEEE--------------CCCeEEEEeCCCCceEEEeeccccc-------------
Q psy8448         187 KLEKAH--SLGVTCIQFSRDNSQILTAS--------------FDTYVRIHGLKSGKMLKEFRGHSSF-------------  237 (482)
Q Consensus       187 ~~~~~~--~~~v~~i~~~~~~~~l~~~~--------------~dg~i~i~d~~~~~~~~~~~~~~~~-------------  237 (482)
                      .+....  ..-=..+...|+|.+|+.+.              .|. |..+| .+|+.+..+.....-             
T Consensus       181 ~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~  258 (477)
T PF05935_consen  181 EYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPY  258 (477)
T ss_dssp             EEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--S
T ss_pred             eeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccc


Q ss_pred             --------------eeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC-----------C
Q psy8448         238 --------------VNDITFTA-DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP-----------K  291 (482)
Q Consensus       238 --------------i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~-----------~  291 (482)
                                    ++++.+.+ ++.+++++-.-..|...|.++++....+.....-........+.|           .
T Consensus       259 ~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~  338 (477)
T PF05935_consen  259 GDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGD  338 (477)
T ss_dssp             SSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSS
T ss_pred             cccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccC


Q ss_pred             C------CCEEEEEeCCC---eEEEEE
Q psy8448         292 N------TEHFVVCNKTN---TVVIMN  309 (482)
Q Consensus       292 ~------~~~l~~~~~d~---~i~i~d  309 (482)
                      +      +.+-+.-..++   .|.+||
T Consensus       339 ~~~~~~~gQH~~~~~~~g~~~~l~vFD  365 (477)
T PF05935_consen  339 GDFDWFWGQHTAHLIPDGPQGNLLVFD  365 (477)
T ss_dssp             SS----SS-EEEEE-TTS---SEEEEE
T ss_pred             CCCcccccccceEEcCCCCeEEEEEEE

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PLN02193 nitrile-specifier protein

Probab=88.76  E-value=24  Score=34.29  Aligned_cols=180  Identities=7%  Similarity=0.002  Sum_probs=81.3

Q ss_pred             CCCEEEEEeCC-------CcEEEEEcCCCeEeEEeecc-cCC--CeEEEEEccCCCEEEEEECC-----CeEEEEeCCCC
Q psy8448         161 DSEMLASGSQS-------GKVKIWKIATGQCLRKLEKA-HSL--GVTCIQFSRDNSQILTASFD-----TYVRIHGLKSG  225 (482)
Q Consensus       161 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~-~~~--~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~  225 (482)
                      ++..++.|+.+       ..+.+||+.+.+....-... ...  ........-++..++.|+.+     ..+..||+.+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            34555666643       24778888776543211000 111  11111122255666666654     36888998876


Q ss_pred             ceEEE--ee--ccccceeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeeeeec--cCCCccceeEEEEcCCCCC
Q psy8448         226 KMLKE--FR--GHSSFVNDITFTADGHSVLSASSDG-----TVKMWNLKTTECTSTFKS--LGASDIAVNSIHLLPKNTE  294 (482)
Q Consensus       226 ~~~~~--~~--~~~~~i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~  294 (482)
                      +-...  +.  .....-.+++. -++++++.|+.++     .+..||+.+.+-...-..  ....... ..++. -++ .
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~g-k  330 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQG-K  330 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECC-c
Confidence            43221  10  01111112222 2456666666543     467888877543221100  0000111 11222 234 6


Q ss_pred             EEEEEeCC----CeEEEEEcCCcEEEEecCC---cccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         295 HFVVCNKT----NTVVIMNMQGQIVRSLSSG---KREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       295 ~l~~~~~d----~~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      +++.++.+    ..+.+||........+...   ........++.  -++++++.|+.+
T Consensus       331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~  387 (470)
T PLN02193        331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEI  387 (470)
T ss_pred             EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCcc
Confidence            77776654    4688999855444444321   11111112222  246677777753

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.51  E-value=22  Score=33.35  Aligned_cols=197  Identities=14%  Similarity=0.137  Sum_probs=104.0

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      +++ +..+..+|.|.-.|..+++.+-......      ....+.+-.+..+|+ ++.++.+|.+..+|..+++.......
T Consensus        68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~------~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~  139 (370)
T COG1520          68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLG------AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNV  139 (370)
T ss_pred             CCe-EEEecCCCcEEEEeCCCCcEEecccCcC------cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEec
Confidence            444 4445678888888888887553222221      001122222222665 88888899999999888988887742


Q ss_pred             ccCC-CeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccc---cceeEEEEcCCCCEEEEEeC--CCcEEEEEC
Q psy8448         191 AHSL-GVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS---SFVNDITFTADGHSVLSASS--DGTVKMWNL  264 (482)
Q Consensus       191 ~~~~-~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~  264 (482)
                       ... .+.....- ....+..++.++.+...|..+++.........   ..+..--.. ....++.+..  ++.+.-.|.
T Consensus       140 -~~~~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         140 -GGSPYYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             -CCCeEEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEc
Confidence             221 11111111 22344455478999999999898876654321   111111111 2233455554  566777888


Q ss_pred             CCCceeeeeeccC--CCcc-----ceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecC
Q psy8448         265 KTTECTSTFKSLG--ASDI-----AVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSS  320 (482)
Q Consensus       265 ~~~~~~~~~~~~~--~~~~-----~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~  320 (482)
                      +++......+...  ....     .+..-...-+  .-+..++.++.+...+. +++.+-.+..
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~--~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVD--GGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEEC--CcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            8887665532111  1100     0000000111  12355666666666666 5776666654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.48  E-value=4.7  Score=32.89  Aligned_cols=32  Identities=13%  Similarity=0.075  Sum_probs=25.5

Q ss_pred             ccceeEEEEcCCC-----CCEEEEEeCCCeEEEEEcC
Q psy8448         280 DIAVNSIHLLPKN-----TEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       280 ~~~v~~i~~~~~~-----~~~l~~~~~d~~i~i~d~~  311 (482)
                      ...+..++|+|.|     .-+|++.+.++.+.+|...
T Consensus        85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            3478999999965     3477888899999999764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.41  E-value=3.4  Score=23.93  Aligned_cols=40  Identities=8%  Similarity=0.157  Sum_probs=27.7

Q ss_pred             cCCCEEEEEE-CCCeEEEEeCCCCceEEEeeccccceeEEEE
Q psy8448         203 RDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHSSFVNDITF  243 (482)
Q Consensus       203 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~  243 (482)
                      |++++|+++. .++.|.++|..+++.+..+.. ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            5677666655 578999999998888877765 333445554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.18  E-value=16  Score=31.66  Aligned_cols=143  Identities=13%  Similarity=0.150  Sum_probs=78.2

Q ss_pred             EEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-C--CcEEEEEcCCC--eE-eEEee--cccCCC
Q psy8448         124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-S--GKVKIWKIATG--QC-LRKLE--KAHSLG  195 (482)
Q Consensus       124 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-d--g~i~iwd~~~~--~~-~~~~~--~~~~~~  195 (482)
                      -.+||+.+++.... ...       .+..+.+-.+-++|+.|.+|+. +  ..+++++....  .+ .....  .....-
T Consensus        48 s~~yD~~tn~~rpl-~v~-------td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW  119 (243)
T PF07250_consen   48 SVEYDPNTNTFRPL-TVQ-------TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW  119 (243)
T ss_pred             EEEEecCCCcEEec-cCC-------CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence            45788888765432 111       1234555567889999999874 2  35788876440  11 10000  011222


Q ss_pred             eEEEEEccCCCEEEEEECCC-eEEEEeCCCC-ceEEEe--ec------cccceeEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy8448         196 VTCIQFSRDNSQILTASFDT-YVRIHGLKSG-KMLKEF--RG------HSSFVNDITFTADGHSVLSASSDGTVKMWNLK  265 (482)
Q Consensus       196 v~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~-~~~~~~--~~------~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~  265 (482)
                      --+..--|||+.|+.|+... ...+|.-+.. .....+  ..      ...--..+...|+|+.++.+..+.  .|||..
T Consensus       120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~  197 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYK  197 (243)
T ss_pred             cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCC
Confidence            23344567999999988775 3444443221 111111  10      111122456678999888887654  567988


Q ss_pred             CCceeeeeecc
Q psy8448         266 TTECTSTFKSL  276 (482)
Q Consensus       266 ~~~~~~~~~~~  276 (482)
                      +.+.++.+..+
T Consensus       198 ~n~v~~~lP~l  208 (243)
T PF07250_consen  198 TNTVVRTLPDL  208 (243)
T ss_pred             CCeEEeeCCCC
Confidence            88766666543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.17  E-value=26  Score=35.42  Aligned_cols=29  Identities=7%  Similarity=0.292  Sum_probs=25.0

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      ++.|...+||.|.+.++....+..|.+++
T Consensus       112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~  140 (1243)
T COG5290         112 SNGIVAASWSADEKTWCVVTSTREILLFD  140 (1243)
T ss_pred             cCceEEEeeccCCceEEEEEcCceEEEEe
Confidence            57899999999999888888888888876

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.84  E-value=17  Score=32.31  Aligned_cols=97  Identities=13%  Similarity=0.157  Sum_probs=57.3

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe------CCCcEEEEEcCCCeEeEEeec----c
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS------QSGKVKIWKIATGQCLRKLEK----A  191 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~----~  191 (482)
                      ..|++||..+.+-...-..        -.+.|+.|.|..+.+.++.|.      ....+..||+.+.... .+..    .
T Consensus        16 ~~lC~yd~~~~qW~~~g~~--------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~   86 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNG--------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNS   86 (281)
T ss_pred             CEEEEEECCCCEeecCCCC--------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCccccc
Confidence            4599999887664332221        257899999997766666664      3457888998766532 2212    1


Q ss_pred             cCCCeEEEEEcc-CCCEEE-EEE-C--CCeEEEEeCCCCce
Q psy8448         192 HSLGVTCIQFSR-DNSQIL-TAS-F--DTYVRIHGLKSGKM  227 (482)
Q Consensus       192 ~~~~v~~i~~~~-~~~~l~-~~~-~--dg~i~i~d~~~~~~  227 (482)
                      -.++|..+.+.. ++..+. .|. .  +..|..||=.+...
T Consensus        87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~  127 (281)
T PF12768_consen   87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSS  127 (281)
T ss_pred             CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEe
Confidence            246788887744 343344 332 2  23466666444433

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.54  E-value=4.4  Score=40.35  Aligned_cols=72  Identities=22%  Similarity=0.253  Sum_probs=45.5

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCC----CeEeEEee-cc--------------------cCCCeEEEEEcc----CCCEEEE
Q psy8448         160 RDSEMLASGSQSGKVKIWKIAT----GQCLRKLE-KA--------------------HSLGVTCIQFSR----DNSQILT  210 (482)
Q Consensus       160 ~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~-~~--------------------~~~~v~~i~~~~----~~~~l~~  210 (482)
                      ++...++.+..||.+.......    +....... ..                    ....+..++.+.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667888999999998887654    22211110 00                    122355566665    6789999


Q ss_pred             EECCCeEEEEeCCCCceEEEe
Q psy8448         211 ASFDTYVRIHGLKSGKMLKEF  231 (482)
Q Consensus       211 ~~~dg~i~i~d~~~~~~~~~~  231 (482)
                      .+.|+.+++||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999996655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1900|consensus

Probab=87.48  E-value=15  Score=39.20  Aligned_cols=30  Identities=20%  Similarity=0.195  Sum_probs=25.3

Q ss_pred             ecccceeeccccCCcceEEEEecCceeecC
Q psy8448         453 VHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       453 ~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      .+.++|..++.....+.|-+=+..|+|++|
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y  269 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAY  269 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEE
Confidence            677789999998888888888888888877

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=87.28  E-value=24  Score=32.59  Aligned_cols=182  Identities=10%  Similarity=0.051  Sum_probs=0.0

Q ss_pred             CCCEEEEEeCC-----------CeEEEEecCCCceeeccccccccccccccccEEEEEE-cCCCCEEEEEeCC-------
Q psy8448         111 DGQYLITGSVD-----------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-SRDSEMLASGSQS-------  171 (482)
Q Consensus       111 ~~~~l~s~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~-~~~~~~l~~~~~d-------  171 (482)
                      ++++.+.|+.+           ..+..||..+.+-.......+       ...--..+. .-+++..+.|+.+       
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p-------~~~~~~~~~~~~~g~IYviGG~~~~~~~~~  135 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSP-------VGLLGASGFSLHNGQAYFTGGVNKNIFDGY  135 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCC-------CcccceeEEEEeCCEEEEEcCcChHHHHHH


Q ss_pred             --------------------------------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-----
Q psy8448         172 --------------------------------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-----  214 (482)
Q Consensus       172 --------------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----  214 (482)
                                                      ..+.+||..+++-...-...............+++.++.|+.+     
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~  215 (346)
T TIGR03547       136 FADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLR  215 (346)
T ss_pred             HhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCcc


Q ss_pred             -CeEEEEeCCCCceEEEeeccccc---------eeEEEEcCCCCEEEEEeCC----------------------CcEEEE
Q psy8448         215 -TYVRIHGLKSGKMLKEFRGHSSF---------VNDITFTADGHSVLSASSD----------------------GTVKMW  262 (482)
Q Consensus       215 -g~i~i~d~~~~~~~~~~~~~~~~---------i~~l~~~~~~~~l~~~~~d----------------------g~i~i~  262 (482)
                       ..+..+++...+........-..         ..+.+...+++.++.|+.+                      ..+.+|
T Consensus       216 ~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y  295 (346)
T TIGR03547       216 TAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY  295 (346)
T ss_pred             chheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEE


Q ss_pred             ECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC
Q psy8448         263 NLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN  303 (482)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  303 (482)
                      |.++.+-...-.   .....-...+..-++ .+++.|+.+.
T Consensus       296 d~~~~~W~~~~~---lp~~~~~~~~~~~~~-~iyv~GG~~~  332 (346)
T TIGR03547       296 ALDNGKWSKVGK---LPQGLAYGVSVSWNN-GVLLIGGENS  332 (346)
T ss_pred             EecCCcccccCC---CCCCceeeEEEEcCC-EEEEEeccCC

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4659|consensus

Probab=87.04  E-value=49  Score=35.80  Aligned_cols=44  Identities=23%  Similarity=0.405  Sum_probs=27.8

Q ss_pred             cccccceeeecCCCCcEEEEEEcC--CCC-EE----EEEeCCCeEEEEecC
Q psy8448          87 YPTQLSKQIKFGSKSHVECARFSP--DGQ-YL----ITGSVDGFIEVWNFT  130 (482)
Q Consensus        87 ~~~~~~~~~~~~h~~~v~~~~~s~--~~~-~l----~s~~~dg~v~iwd~~  130 (482)
                      .|.-....+..||..+|.|..+.-  ++. +|    ++.+-||.+.|=|.+
T Consensus       334 ~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN  384 (1899)
T KOG4659|consen  334 EPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN  384 (1899)
T ss_pred             CCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch
Confidence            345555566778888888887754  222 22    234568888887754

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=86.62  E-value=28  Score=32.66  Aligned_cols=53  Identities=13%  Similarity=0.226  Sum_probs=26.1

Q ss_pred             CCCEEEEEeCC-----------CcEEEEEcCCCeEeEEeecccCCCeE-EEEEc-cCCCEEEEEECC
Q psy8448         161 DSEMLASGSQS-----------GKVKIWKIATGQCLRKLEKAHSLGVT-CIQFS-RDNSQILTASFD  214 (482)
Q Consensus       161 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~v~-~i~~~-~~~~~l~~~~~d  214 (482)
                      ++...+.|+.+           ..+..||..+.+....- ........ ..+.. -+++..+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~-~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLD-TRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCC-CCCCCcccceEEEEeeCCEEEEECCCC
Confidence            46667777643           24777888766533321 11111111 11222 366777777754

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.33  E-value=5.3  Score=39.78  Aligned_cols=79  Identities=23%  Similarity=0.372  Sum_probs=46.0

Q ss_pred             CCCCEEEEEeCCCeEEEEecCC----Cceeecccccccc---c---c--------ccccccEEEEEEcC----CCCEEEE
Q psy8448         110 PDGQYLITGSVDGFIEVWNFTT----GKIRKDLKYQAQD---N---F--------MLMEEAVMSLAYSR----DSEMLAS  167 (482)
Q Consensus       110 ~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~---~---~--------~~h~~~i~~l~~~~----~~~~l~~  167 (482)
                      ++...++.+..||.+.......    +............   .   +        ..-...+..++.++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666788888899888887664    2211111111110   0   0        00123455666666    6789999


Q ss_pred             EeCCCcEEEEEcCCCeEeEEe
Q psy8448         168 GSQSGKVKIWKIATGQCLRKL  188 (482)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~  188 (482)
                      .+.|+++++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999997765

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.15  E-value=32  Score=32.89  Aligned_cols=191  Identities=14%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEec-------CCCceeecc-ccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNF-------TTGKIRKDL-KYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~-------~~~~~~~~~-~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      .....+..+...|.-+++.  |..+.||+.       .++.....+ ...        ...+.++        +++....
T Consensus        26 ~~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~--------~~~i~~v--------~lv~p~~   87 (422)
T PF08801_consen   26 QSPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGS--------SSSIPGV--------GLVKPKT   87 (422)
T ss_dssp             TTS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-------------------SE--------EEEE-TT
T ss_pred             ccceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCC--------CCCCceE--------EEEEcCC


Q ss_pred             CcEEEEEcCCCeEeEEeec-----------ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe---------
Q psy8448         172 GKVKIWKIATGQCLRKLEK-----------AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF---------  231 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~-----------~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------  231 (482)
                      |.|..|+--+.........           -.........-+-...-++.+..+|.|.....+....+.++         
T Consensus        88 G~v~f~~~I~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~  167 (422)
T PF08801_consen   88 GRVVFWESISHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSGFIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRC  167 (422)
T ss_dssp             -EEEEES-TT-TT--EEEE------------------EEEEEEETTTEEEEETT--EEEEEE-TTS-EEEEE-TT-----
T ss_pred             CCEEecccchhhhhcCccccccccccceeeecCCceEEECCCCceEEEEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCc


Q ss_pred             ----------------e-ccccc-eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee--------------------
Q psy8448         232 ----------------R-GHSSF-VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF--------------------  273 (482)
Q Consensus       232 ----------------~-~~~~~-i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------------  273 (482)
                                      . ..... |..++..+..+.+++.+.+|.|.+|++..+......                    
T Consensus       168 ~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  247 (422)
T PF08801_consen  168 SKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGGSTLVSKVDIQEIILSSLQSAIPRSA  247 (422)
T ss_dssp             ------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-SS-EEEEEEEEHHHHHHHHHHHHHHTTS
T ss_pred             cccccccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeCCCCceeeehhHHHHHHHHHHHhhhhhh


Q ss_pred             --eccCCCccceeEEEEcCCC--CCEEEEEeCCCeEEEE
Q psy8448         274 --KSLGASDIAVNSIHLLPKN--TEHFVVCNKTNTVVIM  308 (482)
Q Consensus       274 --~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~i~  308 (482)
                        .........+.++...+.+  ..+.+++-.....++|
T Consensus       248 ~~~~~~~~~~~ildi~~i~~~~s~~~~Lva~t~~g~r~y  286 (422)
T PF08801_consen  248 SSSDLSSISFKILDIHPISAGESSLLVLVAVTSNGCRLY  286 (422)
T ss_dssp             HHHHHTT-EEEEEEEEEETTEEEEEEEEE-TTSSS-BEE
T ss_pred             hcccccCCCeEEEEEEEeCccCceeEEEEEeccCCcEEE

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG3616|consensus

Probab=85.91  E-value=2  Score=42.43  Aligned_cols=98  Identities=12%  Similarity=0.242  Sum_probs=62.8

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcE
Q psy8448         235 SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI  314 (482)
Q Consensus       235 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~  314 (482)
                      ...++++.-+|.+..++.+..||.|.+|+..........    ....|-..+.|...|   +++.+.|..+.-|.-+|-.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~----~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~dgvv   86 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC----EEAKPKENLVFTNHG---LVTATSDRRALAWKEDGVV   86 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh----hhcCCccceeeeccc---eEEEeccchhheeeccCcc
Confidence            345778888999999999999999999998765432222    112233445555543   7777888888888777755


Q ss_pred             EEEecCCcccCcCEEEEEEcCCCCE
Q psy8448         315 VRSLSSGKREGGDFLCCTTSPRGEW  339 (482)
Q Consensus       315 ~~~~~~~~~~~~~v~~~~~~~~g~~  339 (482)
                      ...+...........++...|..+.
T Consensus        87 qqqfdyndqsekefss~~cdptaqn  111 (1636)
T KOG3616|consen   87 QQQFDYNDQSEKEFSSILCDPTAQN  111 (1636)
T ss_pred             hhhccccchhhhhccceecCchhhh
Confidence            5555443333444455555555443

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.89  E-value=22  Score=30.75  Aligned_cols=133  Identities=14%  Similarity=0.134  Sum_probs=70.4

Q ss_pred             EEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-C--CcEEEEECCCCceeeeee---ccCCCccceeEEEEcC
Q psy8448         217 VRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-D--GTVKMWNLKTTECTSTFK---SLGASDIAVNSIHLLP  290 (482)
Q Consensus       217 i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~---~~~~~~~~v~~i~~~~  290 (482)
                      -.+||+.+++....-........+-.+.+||++|.+|+. +  ..+++++.-.......+.   ........-.+....|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            457888887643222222333344457789999988875 2  347888764411001111   0012334445666778


Q ss_pred             CCCCEEEEEeCCC-eEEEEEcC--CcEEEEe---cCC--cccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         291 KNTEHFVVCNKTN-TVVIMNMQ--GQIVRSL---SSG--KREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       291 ~~~~~l~~~~~d~-~i~i~d~~--~~~~~~~---~~~--~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +| +.+++|+... +..+|...  ......+   ...  .....-.--+...|+|+.++.+..+..|+
T Consensus       128 DG-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~  194 (243)
T PF07250_consen  128 DG-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY  194 (243)
T ss_pred             CC-CEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence            88 6777766653 45555542  1111111   110  00112223567789999999888776654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2063|consensus

Probab=85.84  E-value=38  Score=35.37  Aligned_cols=77  Identities=12%  Similarity=0.129  Sum_probs=46.2

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEecCCCceeecccc--ccc-cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe
Q psy8448         107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY--QAQ-DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ  183 (482)
Q Consensus       107 ~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~-~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  183 (482)
                      ++...|+.+..|+.+|.+.+|.+.+.........  ... -.-.-+..+|..+...+.-..+++- .|+.+.++++.+-+
T Consensus        21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~   99 (877)
T KOG2063|consen   21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELE   99 (877)
T ss_pred             HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCccc
Confidence            3444588999999999999999876532221111  000 0000124677777777655544443 46788888876655


Q ss_pred             E
Q psy8448         184 C  184 (482)
Q Consensus       184 ~  184 (482)
                      .
T Consensus       100 ~  100 (877)
T KOG2063|consen  100 P  100 (877)
T ss_pred             c
Confidence            4

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.99  E-value=4  Score=23.59  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=22.9

Q ss_pred             CCCCEEEEEe-CCCeEEEEecCCCceeecccc
Q psy8448         110 PDGQYLITGS-VDGFIEVWNFTTGKIRKDLKY  140 (482)
Q Consensus       110 ~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~  140 (482)
                      |++++|+++. .++.|.++|..+++....+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677676654 578999999988877666554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=84.66  E-value=47  Score=33.40  Aligned_cols=243  Identities=15%  Similarity=0.127  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecC-CCceeeccccccccccccccccEEEEEEcCCCC---EEEEE-eCCCcEEEE
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFT-TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE---MLASG-SQSGKVKIW  177 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~---~l~~~-~~dg~i~iw  177 (482)
                      +.+..++|+.+.+-.|=....|--|=++ +.+.+..+..++       +..|.|+.......   +.++| ...+.-++.
T Consensus        30 ~vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~p-------t~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll  102 (670)
T PF10395_consen   30 QVSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISP-------TTIVECCDVLEKSDGKKLYCVGLTERKKFKLL  102 (670)
T ss_pred             eeecccCCCCceEEEEeccchhhheecCCCcceeEeeccCc-------CceEEEEEeEecCCCcEEEEEEEeeCCeeEEE


Q ss_pred             EcCCC-----------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeC---------CCCceEEEeeccccc
Q psy8448         178 KIATG-----------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL---------KSGKMLKEFRGHSSF  237 (482)
Q Consensus       178 d~~~~-----------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~~~~~~  237 (482)
                      .+..+           +....+...-...|..+.|.++++.+++...+|.|.+||.         .....-..-..+...
T Consensus       103 ~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~f  182 (670)
T PF10395_consen  103 LIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKF  182 (670)
T ss_pred             EEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhh


Q ss_pred             eeEEEEcCCCCEEEEEeC-CCc---EEEEEC-CCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C
Q psy8448         238 VNDITFTADGHSVLSASS-DGT---VKMWNL-KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q  311 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~-dg~---i~i~d~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~  311 (482)
                      |.....-....++++.+. ++.   .+++.+ .....+..+.....+........|+-+.+.++-.  .++.|.+|++ .
T Consensus       183 v~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~  260 (670)
T PF10395_consen  183 VNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPN  260 (670)
T ss_pred             hcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCC


Q ss_pred             CcEEEEecCCcccCcC-EEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         312 GQIVRSLSSGKREGGD-FLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~-v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      -+...++.-...-... -.-+.+.|=..-=+.-+.++.|++.++
T Consensus       261 f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~  304 (670)
T PF10395_consen  261 FQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDL  304 (670)
T ss_pred             ceEEEEEEechhhccccccceEeecCCCCeEEEEcCCEEEEEee

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG4460|consensus

Probab=84.33  E-value=37  Score=32.67  Aligned_cols=74  Identities=15%  Similarity=0.258  Sum_probs=48.0

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEC---------CCCceeeeeecc--------CCCccceeEEEEcCCC--CCEEEE
Q psy8448         238 VNDITFTADGHSVLSASSDGTVKMWNL---------KTTECTSTFKSL--------GASDIAVNSIHLLPKN--TEHFVV  298 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~~~--------~~~~~~v~~i~~~~~~--~~~l~~  298 (482)
                      |..+..++.|..++..+.+|.+.++=.         +.++..-.-+..        ....-.+..++|+|+.  ...+..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i  185 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL  185 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence            566777888888888888885544431         223221111100        0223456788999987  678888


Q ss_pred             EeCCCeEEEEEcC
Q psy8448         299 CNKTNTVVIMNMQ  311 (482)
Q Consensus       299 ~~~d~~i~i~d~~  311 (482)
                      -+.|+.|++||..
T Consensus       186 L~sdnviRiy~lS  198 (741)
T KOG4460|consen  186 LTSDNVIRIYSLS  198 (741)
T ss_pred             EecCcEEEEEecC
Confidence            9999999999983

>KOG1983|consensus

Probab=83.83  E-value=54  Score=35.30  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGK  133 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~  133 (482)
                      |-......++|+|...++|.|+.+|.|+++-...-+
T Consensus        33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCCCCcceeeccccceEEEEEecccEEEecccceE
Confidence            555567788999999999999999999999765433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	482
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-27
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-27
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-27
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-27
2h9l_A	329	Wdr5delta23 Length = 329		1e-27
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-27
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-27
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-27
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-27
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-27
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-27
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-27
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-27
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-27
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		9e-27
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-26
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-25
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-21
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-20
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-19
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-19
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-19
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-08
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-19
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-17
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-10
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-16
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-10
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-15
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-15
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-15
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-15
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-15
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-14
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-14
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		7e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-14
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		9e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-14
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-14
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-14
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-14
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-13
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-11
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-11
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-11
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-11
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		8e-10
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		8e-10
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-09
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-09
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-09
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-09
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-06
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		7e-09
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		8e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		7e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-08
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-08
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		8e-08
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-07
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		9e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-06
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		1e-06
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		7e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		7e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		4e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		6e-04
1s4u_X	407	Crystal Structure Analysis Of The Beta-Propeller Pr		8e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88  PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
           P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K +      
Sbjct: 30  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 86
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
                +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  
Sbjct: 87  -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 140
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
           ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+ 
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
            + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K 
Sbjct: 201 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 308

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 23/303 (7%)
Query: 83  EEEKYPTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
           + +  P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K + 
Sbjct: 9   QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 140 YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199
                     +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C 
Sbjct: 69  GH--------KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCC 119
Query: 200 QFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV 259
            F+  ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL 318
           ++W+  + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ 
Sbjct: 180 RIWDTASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 319 SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSL 378
           +  K E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V +
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVI 289
Query: 379 NTV 381
           +T 
Sbjct: 290 STA 292

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88  PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
           P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K +      
Sbjct: 32  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 88
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
                +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  
Sbjct: 89  -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 142
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
           ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+ 
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
            + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K 
Sbjct: 203 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 310

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88  PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
           P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K +      
Sbjct: 4   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 60
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
                +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  
Sbjct: 61  -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 114
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
           ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+ 
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
            + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K 
Sbjct: 175 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 282

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88  PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
           P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K +      
Sbjct: 25  PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 81
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
                +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  
Sbjct: 82  -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 135
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
           ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+ 
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
            + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K 
Sbjct: 196 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 252
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 303

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 23/303 (7%)
Query: 83  EEEKYPTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
           + +  P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K + 
Sbjct: 9   QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 140 YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199
                     +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C 
Sbjct: 69  GH--------KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCC 119
Query: 200 QFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV 259
            F+  ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL 318
           ++W+  + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ 
Sbjct: 180 RIWDTASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 319 SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSL 378
           +  K E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V +
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVI 289
Query: 379 NTV 381
           +T 
Sbjct: 290 STA 292

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88  PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
           P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K +      
Sbjct: 7   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 63
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
                +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  
Sbjct: 64  -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 117
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
           ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+ 
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
            + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K 
Sbjct: 178 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 234
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 285

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 23/303 (7%)
Query: 83  EEEKYPTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
           + +  P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K + 
Sbjct: 8   QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 67
Query: 140 YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199
                     +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C 
Sbjct: 68  GH--------KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCC 118
Query: 200 QFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV 259
            F+  ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  
Sbjct: 119 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL 318
           ++W+  + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ 
Sbjct: 179 RIWDTASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 319 SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSL 378
           +  K E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V +
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVI 288
Query: 379 NTV 381
           +T 
Sbjct: 289 STA 291

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88  PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
           P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K +      
Sbjct: 8   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 64
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
                +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  
Sbjct: 65  -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 118
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
           ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+ 
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
            + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K 
Sbjct: 179 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 286

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88  PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
           P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K +      
Sbjct: 8   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 64
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
                +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  
Sbjct: 65  -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 118
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
           ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+ 
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
            + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K 
Sbjct: 179 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 286

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 23/298 (7%)
Query: 88  PTQLSKQIKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD 144
           P + +  +KF    H   V   +FSP+G++L + S D  I++W    GK  K +      
Sbjct: 9   PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--- 65
Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
                +  +  +A+S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  
Sbjct: 66  -----KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ 119
Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
           ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+ 
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR 323
            + +C  T   +   +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K 
Sbjct: 180 ASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           E        +   G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 287

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 25/311 (8%)
Query: 77  AAMKDQEEEKYPTQLSKQ--IKFGSKSH---VECARFSPDGQYLITGSVDGFIEVWNFTT 131
            AM     +  PT +     +KF    H   V   +FSP+G++L + S D  I++W    
Sbjct: 1   GAMGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 132 GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA 191
           GK  K +           +  +  +A+S DS +L S S    +KIW +++G+CL+ L K 
Sbjct: 61  GKFEKTISGH--------KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KG 111
Query: 192 HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL 251
           HS  V C  F+  ++ I++ SFD  VRI  +K+GK LK    HS  V+ + F  DG  ++
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM- 310
           S+S DG  ++W+  + +C  T   +   +  V+ +   P N ++ +     NT+ + +  
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYS 228
Query: 311 QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCL 370
           +G+ +++ +  K E        +   G+WI    ED ++ +  +Q         + +Q L
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKL 281
Query: 371 QEETGVSLNTV 381
           Q  T V ++T 
Sbjct: 282 QGHTDVVISTA 292

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 141/285 (49%), Gaps = 20/285 (7%)
Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G    V   +FSP+G++L + S D  I++W    GK  K +           +  +  +A
Sbjct: 24  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--------KLGISDVA 75
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
           +S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  ++ I++ SFD  V
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
           RI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+  + +C  T   + 
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336
             +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K E        +   
Sbjct: 193 DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 252 GKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 289

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  118 bits (296), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 141/285 (49%), Gaps = 20/285 (7%)
Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G    V   +FSP+G++L + S D  I++W    GK  K +           +  +  +A
Sbjct: 24  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--------KLGISDVA 75
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
           +S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  ++ I++ SFD  V
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
           RI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+  + +C  T   + 
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336
             +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K E        +   
Sbjct: 193 DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 252 GKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 289

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 140/285 (49%), Gaps = 20/285 (7%)
Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G    V   +FSP+G++L   S D  I++W    GK  K +           +  +  +A
Sbjct: 24  GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH--------KLGISDVA 75
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
           +S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  ++ I++ SFD  V
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
           RI  +K+GK LK    HS  V+ + F  DG  ++S+S DG  ++W+  + +C  T   + 
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336
             +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K E        +   
Sbjct: 193 DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 252 GKWIVSGSEDNLVYIWNLQT-------KEIVQKLQGHTDVVISTA 289

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 140/285 (49%), Gaps = 20/285 (7%)
Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G    V   +FSP+G++L + S D  I++W    GK  K +           +  +  +A
Sbjct: 24  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--------KLGISDVA 75
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
           +S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  ++ I++ SFD  V
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
           RI  +K+G  LK    HS  V+ + F  DG  ++S+S DG  ++W+  + +C  T   + 
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336
             +  V+ +   P N ++ +     NT+ + +  +G+ +++ +  K E        +   
Sbjct: 193 DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 252 GKWIVSGSEDNMVYIWNLQT-------KEIVQKLQGHTDVVISTA 289

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 139/285 (48%), Gaps = 20/285 (7%)
Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G    V   +FSP+G++L + S D  I++W    GK  K +           +  +  +A
Sbjct: 24  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--------KLGISDVA 75
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
           +S DS +L S S    +KIW +++G+CL+ L K HS  V C  F+  ++ I++ SFD  V
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
           RI  +K+G  LK    HS  V+ + F  DG  ++S+S DG  ++W+  + +C  T   + 
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--ID 192
Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR 336
             +  V+ +   P N ++ +     N + + +  +G+ +++ +  K E        +   
Sbjct: 193 DDNPPVSFVKFSP-NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 337 GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV 381
           G+WI    ED ++ +  +Q         + +Q LQ  T V ++T 
Sbjct: 252 GKWIVSGSEDNMVYIWNLQT-------KEIVQKLQGHTDVVISTA 289

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 121/256 (47%), Gaps = 20/256 (7%)
Query: 94  QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
           Q   G  S V    FSPDGQ + + S D  +++WN   G++ + L   +         +V
Sbjct: 92  QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS--------SSV 142
Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
             +A+S D + +AS S    VK+W    GQ L+ L   HS  V  + FS D   I +AS 
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDGQTIASASD 200
Query: 214 DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTF 273
           D  V++   ++G++L+   GHSS V  + F+ DG ++ SAS D TVK+WN          
Sbjct: 201 DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLL 255
Query: 274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTT 333
           ++L     +VN +   P + +     +   TV + N  GQ++++L+              
Sbjct: 256 QTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVWGVAF 311
Query: 334 SPRGEWIYCVGEDMVL 349
           SP G+ I    +D  +
Sbjct: 312 SPDGQTIASASDDKTV 327

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 226 KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNS 285
           K       HSS V  + F+ DG ++ SAS D TVK+WN          ++L     +V  
Sbjct: 7   KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWG 62
Query: 286 IHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS--SGKREGGDFLCCTTSPRGEWIYCV 343
           +   P + +     +   TV + N  GQ++++L+  S    G  F     SP G+ I   
Sbjct: 63  VAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF-----SPDGQTIASA 116
Query: 344 GEDMVLVVRLIQQYLKESNLMKTL 367
            +D     + ++ + +   L++TL
Sbjct: 117 SDD-----KTVKLWNRNGQLLQTL 135

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 19/208 (9%)
Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G  + V     S +G + ++ S D  + +WN   G        Q Q  F+   + V+S+A
Sbjct: 65  GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG--------QCQYKFLGHTKDVLSVA 116
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK-AHSLGVTCIQFSR--DNSQILTASFD 214
           +S D+  + SG +   +++W +  G+C+  L + AH+  V+C++FS   D   I++  +D
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWD 175
Query: 215 TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
             V++  L +G+++ + +GH+++V  +T + DG    S+  DG  ++W+L   E  S   
Sbjct: 176 NLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM- 234
Query: 275 SLGASDIAVNSIHLLPKNTEHFVVCNKT 302
              A+   +N I   P     + +C  T
Sbjct: 235 ---AAGAPINQICFSPN---RYWMCAAT 256

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 11/206 (5%)
Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL 209
           E A   ++ SRD  +L+ G    +    + + G   R+LE  HS  V+ +  S + +  +
Sbjct: 26  ETATKVVSTSRDKTLLSWGPNPDRHSS-ECSYGLPDRRLE-GHSAFVSDVALSNNGNFAV 83
Query: 210 TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC 269
           +AS+D  +R+  L++G+   +F GH+  V  + F+ D   ++S   D  +++WN+K  EC
Sbjct: 84  SASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GEC 142
Query: 270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-TNTVVIMNMQ-GQIVRSLSSGKREGGD 327
             T  S GA    V+ +   P      +V     N V + ++  G++V  L   K     
Sbjct: 143 MHTL-SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL---KGHTNY 198
Query: 328 FLCCTTSPRGEWIYCVGEDMVLVVRL 353
               T SP G    C   D   V RL
Sbjct: 199 VTSVTVSPDGS--LCASSDKDGVARL 222

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 96/214 (44%), Gaps = 18/214 (8%)
Query: 81  DQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY 140
           D    K P  L+      S  ++    FSPDG++L TG+ D  I +W+    KI   L+ 
Sbjct: 104 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 163
Query: 141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ 200
             QD        + SL Y    + L SGS    V+IW + TGQC   L  +   GVT + 
Sbjct: 164 HEQD--------IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVA 213
Query: 201 FSR-DNSQILTASFDTYVRIHGLKSGKMLKEF-------RGHSSFVNDITFTADGHSVLS 252
            S  D   I   S D  VR+   ++G +++          GH   V  + FT DG SV+S
Sbjct: 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273
Query: 253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSI 286
            S D +VK+WNL+     S  K+  +    V  I
Sbjct: 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 111/212 (52%), Gaps = 20/212 (9%)
Query: 108 FSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS 167
            S DGQ+ ++GS DG + +W+ TTG   +      +D        V+S+A+S D+  + S
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--------VLSVAFSSDNRQIVS 122
Query: 168 GSQSGKVKIWKIATGQCLRKL-EKAHSLGVTCIQFSRDNSQ--ILTASFDTYVRIHGLKS 224
           GS+   +K+W    G C   + +++HS  V+C++FS ++S   I++  +D  V++  L +
Sbjct: 123 GSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 225 GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVN 284
            K+     GH+ ++N +T + DG    S   DG   +W+L   +      +L   DI +N
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDI-IN 237
Query: 285 SIHLLPKNTEHFVVCNKTN-TVVIMNMQGQIV 315
           ++   P     + +C  T  ++ I +++G+I+
Sbjct: 238 ALCFSP---NRYWLCAATGPSIKIWDLEGKII 266

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 111/212 (52%), Gaps = 20/212 (9%)
Query: 108 FSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS 167
            S DGQ+ ++GS DG + +W+ TTG   +      +D        V+S+A+S D+  + S
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--------VLSVAFSSDNRQIVS 145
Query: 168 GSQSGKVKIWKIATGQCLRKL-EKAHSLGVTCIQFSRDNSQ--ILTASFDTYVRIHGLKS 224
           GS+   +K+W    G C   + +++HS  V+C++FS ++S   I++  +D  V++  L +
Sbjct: 146 GSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 225 GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVN 284
            K+     GH+ ++N +T + DG    S   DG   +W+L   +      +L   DI +N
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDI-IN 260
Query: 285 SIHLLPKNTEHFVVCNKTN-TVVIMNMQGQIV 315
           ++   P     + +C  T  ++ I +++G+I+
Sbjct: 261 ALCFSP---NRYWLCAATGPSIKIWDLEGKII 289

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 9/189 (4%)
Query: 163 EMLASGSQSGKVKIWKIATGQC----LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVR 218
           +M+ S S+   + +WK+   +      ++  + HS  V+ +  S D    L+ S+D  +R
Sbjct: 52  DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 219 IHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA 278
           +  L +G   + F GH+  V  + F++D   ++S S D T+K+WN     C  T +    
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESH 170
Query: 279 SDIAVNSIHLLPKNTEHFVV-CNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG 337
           S+  V+ +   P ++   +V C     V + N+    +++   G    G     T SP G
Sbjct: 171 SE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDG 227
Query: 338 EWIYCVGED 346
                 G+D
Sbjct: 228 SLCASGGKD 236

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 103/183 (56%), Gaps = 11/183 (6%)
Query: 93  KQIKFGSKSHVECAR--FSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME 150
           KQIK      V+     FSPD QYL TG+  G + ++   +GK  K+     +  F+L  
Sbjct: 113 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFIL-- 168
Query: 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT 210
               S+AYS D + LASG+  G + I+ IATG+ L  LE  H++ +  + FS D+  ++T
Sbjct: 169 ----SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVT 223
Query: 211 ASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECT 270
           AS D Y++I+ ++   +     GH+S+V ++ F  D    +S+SSD +VK+W++ T  C 
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283
Query: 271 STF 273
            TF
Sbjct: 284 HTF 286

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 9/200 (4%)
Query: 75  GKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKI 134
           G    K   +E  P    K    G +S V    F P    +++ S D  I+VW++ TG  
Sbjct: 83  GPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF 142
Query: 135 RKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSL 194
            + LK           ++V  +++    ++LAS S    +K+W     +C+R +   H  
Sbjct: 143 ERTLKGHT--------DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDH 193
Query: 195 GVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS 254
            V+ +    +   I++AS D  +++  +++G  +K F GH  +V  +    DG  + S S
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253
Query: 255 SDGTVKMWNLKTTECTSTFK 274
           +D TV++W + T EC +  +
Sbjct: 254 NDQTVRVWVVATKECKAELR 273

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 191 AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV 250
            H   VT + F    S +++AS D  +++   ++G   +  +GH+  V DI+F   G  +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310
            S S+D T+K+W+ +  EC    +++   D  V+S+ ++P N +H V  ++  T+ +  +
Sbjct: 166 ASCSADMTIKLWDFQGFEC---IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEV 221
Query: 311 Q-GQIVRSLSSGKRE 324
           Q G  V++  +G RE
Sbjct: 222 QTGYCVKTF-TGHRE 235

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G    VE    S DGQ+ ++GS DG + +W+   G   +      +D        V+S+A
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD--------VLSVA 479
Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA---HSLGVTCIQFSRDNSQ--ILTAS 212
           +S D+  + S S+   +K+W    G+C   + +    H   V+C++FS +  Q  I++AS
Sbjct: 480 FSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538
Query: 213 FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTST 272
           +D  V++  L + K+     GH+ +V+ +  + DG    S   DG V +W+L   +    
Sbjct: 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK---K 595
Query: 273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKT 302
             SL A+ +    IH L  +   + +C  T
Sbjct: 596 LYSLEANSV----IHALCFSPNRYWLCAAT 621

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 11/198 (5%)
Query: 161 DSEMLASGSQSGKVKIWKI-----ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT 215
           +++++ S S+   + +WK+     A G   R+L   HS  V  +  S D    L+ S+D 
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSDGQFALSGSWDG 452
Query: 216 YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS 275
            +R+  L +G   + F GH+  V  + F+ D   ++SAS D T+K+WN    EC  T   
Sbjct: 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISE 511
Query: 276 LG-ASDIAVNSIHLLPKNTEHFVVCNKTN-TVVIMNMQGQIVRSLSSGKREGGDFLCCTT 333
            G      V+ +   P   +  +V    + TV + N+    +RS  +G    G       
Sbjct: 512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAV 569
Query: 334 SPRGEWIYCVGEDMVLVV 351
           SP G      G+D V+++
Sbjct: 570 SPDGSLCASGGKDGVVLL 587

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 106 ARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML 165
           A FS DGQ + +   D  ++V+   TG+   D+K          E+ V+  A+S D   +
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH--------EDEVLCCAFSSDDSYI 672
Query: 166 ASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL--TASFDTYVRIHGLK 223
           A+ S   KVKIW  ATG+ +   ++ HS  V C  F+  ++ +L  T S D ++++  L 
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267
             +      GH++ VN   F+ D   + S S+DGT+++W++++ 
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 29/261 (11%)
Query: 97  FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ-----AQDNFMLMEE 151
           FG  + V   RFSPD + L + S DG + +W+  +   RK +  +     ++D    +E 
Sbjct: 740 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 799
Query: 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA 211
            V   ++S D + +   +++ KV ++ I T   L ++   H   +    FS  +   + A
Sbjct: 800 IVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858
Query: 212 SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS 271
                V +  + S   + + RGH S+V+ + F+ DG S L+AS D T+++W  K      
Sbjct: 859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK----- 913
Query: 272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL-- 329
                    +  NS  +L +  +     N+T  + + N++G     L +GK    D+L  
Sbjct: 914 ---------VCKNSAIVLKQEIDVVFQENETMVLAVDNIRG---LQLIAGKTGQIDYLPE 961
Query: 330 ----CCTTSPRGEWIYCVGED 346
               CC  SP  E++    ED
Sbjct: 962 AQVSCCCLSPHLEYVAFGDED 982

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 106 ARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML 165
           A FS DGQ + +   D  ++V+   TG+   D+K          E+ V+  A+S D   +
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH--------EDEVLCCAFSSDDSYI 679
Query: 166 ASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL--TASFDTYVRIHGLK 223
           A+ S   KVKIW  ATG+ +   ++ HS  V C  F+  ++ +L  T S D ++++  L 
Sbjct: 680 ATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267
             +      GH++ VN   F+ D   + S S+DGT+++W++++ 
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 29/261 (11%)
Query: 97  FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ-----AQDNFMLMEE 151
           FG  + V   RFSPD + L + S DG + +W+  +   RK +  +     ++D    +E 
Sbjct: 747 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 806
Query: 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA 211
            V   ++S D + +   +++ KV ++ I T   L ++   H   +    FS  +   + A
Sbjct: 807 IVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 865
Query: 212 SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS 271
                V +  + S   + + RGH S+V+ + F+ DG S L+AS D T+++W  K      
Sbjct: 866 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK----- 920
Query: 272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL-- 329
                    +  NS  +L +  +     N+T  + + N++G     L +GK    D+L  
Sbjct: 921 ---------VCKNSAIVLKQEIDVVFQENETMVLAVDNIRG---LQLIAGKTGQIDYLPE 968
Query: 330 ----CCTTSPRGEWIYCVGED 346
               CC  SP  E++    ED
Sbjct: 969 AQVSCCCLSPHLEYVAFGDED 989

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 97  FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
           F   SH+  +C   + DG Y ++ S D  + +W+  TG+      YQ    F+  +  VM
Sbjct: 61  FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGET-----YQ---RFVGHKSDVM 111
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
           S+   + + M+ SGS+   +K+W I  GQCL  L   H+  V+ ++         D+  I
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
           ++A  D  V+   L   ++  +F GH+S +N +T + DG  + SA  DG + +WNL   +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CTSTFKS 275
              T  +
Sbjct: 230 AMYTLSA 236

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
           K G  ++ F+GHS  V D T TADG   LSAS D T+++W++ T E    F    +  ++
Sbjct: 53  KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
           V+    + K     +  ++  T+ +  ++GQ + +L
Sbjct: 113 VD----IDKKASMIISGSRDKTIKVWTIKGQCLATL 144

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 97  FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
           F   SH+  +C   + DG Y ++ S D  + +W+  TG+      YQ    F+  +  VM
Sbjct: 61  FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGET-----YQ---RFVGHKSDVM 111
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
           S+   + + M+ SGS+   +K+W I  GQCL  L   H+  V+ ++         D+  I
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
           ++A  D  V+   L   ++  +F GH+S +N +T + DG  + SA  DG + +WNL   +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CTSTFKS 275
              T  +
Sbjct: 230 AMYTLSA 236

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
           K G  ++ F+GHS  V D T TADG   LSAS D T+++W++ T E    F    +  ++
Sbjct: 53  KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
           V+    + K     +  ++  T+ +  ++GQ + +L
Sbjct: 113 VD----IDKKASMIISGSRDKTIKVWTIKGQCLATL 144

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 97  FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
           F   SH+  +C   + DG Y ++ S D  + +W+  TG+      YQ    F+  +  VM
Sbjct: 55  FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGET-----YQ---RFVGHKSDVM 105
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
           S+   + + M+ SGS+   +K+W I  GQCL  L   H+  V+ ++         D+  I
Sbjct: 106 SVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
           ++A  D  V+   L   ++  +F GH+S +N +T + DG  + SA  DG + +WNL   +
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 223
Query: 269 CTSTFKS 275
              T  +
Sbjct: 224 AMYTLSA 230

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
           K G  ++ F+GHS  V D T TADG   LSAS D T+++W++ T E    F    +  ++
Sbjct: 47  KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 106
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
           V+    + K     +  ++  T+ +  ++GQ + +L
Sbjct: 107 VD----IDKKASMIISGSRDKTIKVWTIKGQCLATL 138

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 97  FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
           F   SH+  +C   + DG Y ++ S D  + +W+  TG+      YQ    F+  +  VM
Sbjct: 61  FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGE-----TYQ---RFVGHKSDVM 111
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
           S+   + + M+ SGS+   +K+W I  GQCL  L   H+  V+ ++         D+  I
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
           ++A  D  V+   L   ++  +F GH+S +N +T + DG  + SA  DG + +WNL   +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CTSTFKS 275
              T  +
Sbjct: 230 AMYTLSA 236

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
           K G  ++ F+GHS  V D T TADG   LSAS D T+++W++ T E    F    +  ++
Sbjct: 53  KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
           V+    + K     +  ++  T+ +  ++GQ + +L
Sbjct: 113 VD----IDKKASMIISGSRDKTIKVWTIKGQCLATL 144

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 97  FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
           F   SH+  +C   + DG Y ++ S D  + +W+  TG+      YQ    F+  +  VM
Sbjct: 61  FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGET-----YQ---RFVGHKSDVM 111
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
           S+   + + M+ SGS+   +K+W I  GQCL  L   H+  V+ ++         D+  I
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
           ++A  D  V+   L   ++  +F GH+S +N +T + DG  + SA  DG + +WNL   +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CTSTFKS 275
              T  +
Sbjct: 230 AMYTLSA 236

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA 282
           K G  ++ F+GHS  V D T TADG   LSAS D T+++W++ T E    F    +  ++
Sbjct: 53  KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
           V+    + K     +  ++  T+ +  ++GQ + +L
Sbjct: 113 VD----IDKKASMIISGSRDKTIKVWTIKGQCLATL 144

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 21/223 (9%)
Query: 97  FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSL 156
           +G  S V C       + +++GS D  + VW+  TG        Q     M    AV  +
Sbjct: 196 YGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG--------QCLHVLMGHVAAVRCV 245
Query: 157 AYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTY 216
            Y  D   + SG+    VK+W   T  CL  L+  H+  V  +QF  D   +++ S DT 
Sbjct: 246 QY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTS 300
Query: 217 VRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSL 276
           +R+  +++G  +    GH S  + +    +   ++S ++D TVK+W++KT +C  T +  
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGP 358
Query: 277 GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSL 318
                AV  +     N    +  +   TV + +++ G+ +R+L
Sbjct: 359 NKHQSAVTCLQF---NKNFVITSSDDGTVKLWDLKTGEFIRNL 398

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Query: 97  FGSKSHV--ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM 154
           F   SH+  +C   + DG Y ++ S D  + +W+  TG+      YQ    F+  +  V 
Sbjct: 61  FKGHSHIVQDCT-LTADGAYALSASWDKTLRLWDVATGET-----YQ---RFVGHKSDVX 111
Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF------SRDNSQI 208
           S+   + +  + SGS+   +K+W I  GQCL  L   H+  V+ ++         D+  I
Sbjct: 112 SVDIDKKASXIISGSRDKTIKVWTI-KGQCLATL-LGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
           ++A  D  V+   L   ++  +F GH+S +N +T + DG  + SA  DG + +WNL   +
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
Query: 269 CTSTFKS 275
              T  +
Sbjct: 230 AXYTLSA 236

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 24/208 (11%)
Query: 153 VMSLAYSR-DSEMLASGSQSGKVKIWKIAT-----GQCLRKLEKAHSLGVTCIQFSRDNS 206
           V SLA S     +L S S+   +  WK+       G  +R   K HS  V     + D +
Sbjct: 20  VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGA 78
Query: 207 QILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT 266
             L+AS+D  +R+  + +G+  + F GH S V  +        ++S S D T+K+W +K 
Sbjct: 79  YALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK- 137
Query: 267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE-G 325
            +C +T   LG +D  V+ + ++P         +  +  +I     + V++ +  + +  
Sbjct: 138 GQCLATL--LGHNDW-VSQVRVVPNEK-----ADDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 326 GDFL-------CCTTSPRGEWIYCVGED 346
            DF+         T SP G  I   G+D
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKD 217

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 88  PTQLS-KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNF 146
           PT ++ +++  G ++ V    F  D +Y+++ S D  I+VWN +T +  + L        
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH----- 295
Query: 147 MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS 206
              +  +  L Y RD  ++ SGS    +++W I  G CLR LE  H   V CI+F  DN 
Sbjct: 296 ---KRGIACLQY-RD-RLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNK 347
Query: 207 QILTASFDTYVRIHGL--------KSGKM-LKEFRGHSSFVNDITFTADGHSVLSASSDG 257
           +I++ ++D  +++  L         +G + L+    HS  V  + F  D   ++S+S D 
Sbjct: 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD 405
Query: 258 TVKMWNL 264
           T+ +W+ 
Sbjct: 406 TILIWDF 412

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-SRDSEML 165
           R++PDG++L +G  D  + VW    G    +  +     F   + AV ++A+    S +L
Sbjct: 248 RWAPDGRHLASGGNDNLVNVWPSAPG----EGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 303
Query: 166 ASGSQSGK--VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
           A+G  +    ++IW + +G CL  ++ AHS  V  I +S    ++++       ++   K
Sbjct: 304 ATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKELISGHGFAQNQLVIWK 361
Query: 224 SGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
              M K  E +GH+S V  +T + DG +V SA++D T+++W
Sbjct: 362 YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-SRDSEML 165
           R++PDG++L +G  D  + VW    G    +  +     F   + AV ++A+    S +L
Sbjct: 237 RWAPDGRHLASGGNDNLVNVWPSAPG----EGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292
Query: 166 ASGSQSG--KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
           A+G  +    ++IW + +G CL  ++ AHS  V  I +S    ++++       ++   K
Sbjct: 293 ATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKELISGHGFAQNQLVIWK 350
Query: 224 SGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
              M K  E +GH+S V  +T + DG +V SA++D T+++W
Sbjct: 351 YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-SRDSEML 165
           R++PDG++L +G  D  + VW    G    +  +     F   + AV ++A+    S +L
Sbjct: 157 RWAPDGRHLASGGNDNLVNVWPSAPG----EGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 212
Query: 166 ASGSQSG--KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
           A+G  +    ++IW + +G CL  ++ AHS  V  I +S    ++++       ++   K
Sbjct: 213 ATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKELISGHGFAQNQLVIWK 270
Query: 224 SGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
              M K  E +GH+S V  +T + DG +V SA++D T+++W
Sbjct: 271 YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 66  PGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIE 125
           P     L+ G+  + +     Y TQ+  +    +++ V   +F     ++I GS D  I 
Sbjct: 26  PWVLTTLYSGRVELWN-----YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 126 VWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL 185
           V+N+ TG+  K + ++A  ++      + S+A       + SGS    VK+W       L
Sbjct: 81  VFNYNTGE--KVVDFEAHPDY------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 RKLEKAHSLGVTCIQFS-RDNSQILTASFDTYVRIHGLKSGKMLKEFR---GHSSFVNDI 241
            +  + H   V C+ F+ +D S   +   D  V++  L  G+    F    G    VN +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYV 190
Query: 242 TFTA--DGHSVLSASSDGTVKMWNLKTTECTSTFK 274
            +    D   +++AS D T+K+W+ +T  C +T +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/215 (19%), Positives = 89/215 (41%), Gaps = 4/215 (1%)
Query: 138 LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVT 197
           +K   +  F    + V  + +      + +   SG+V++W   T   +R ++   +  V 
Sbjct: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVR 59
Query: 198 CIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG 257
             +F    + I+  S D  +R+    +G+ + +F  H  ++  I        VLS S D 
Sbjct: 60  AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVR 316
           TVK+WN +        ++    +  V  +   PK+   F       TV + ++ Q     
Sbjct: 120 TVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 317 SLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
           +L++G+  G +++     P   ++    +D+ + +
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 66  PGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIE 125
           P     L+ G+  + +     Y TQ+  +    +++ V   +F     ++I GS D  I 
Sbjct: 26  PWVLTTLYSGRVELWN-----YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 126 VWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL 185
           V+N+ TG+  K + ++A  ++      + S+A       + SGS    VK+W       L
Sbjct: 81  VFNYNTGE--KVVDFEAHPDY------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 RKLEKAHSLGVTCIQFS-RDNSQILTASFDTYVRIHGLKSGKMLKEFR---GHSSFVNDI 241
            +  + H   V C+ F+ +D S   +   D  V++  L  G+    F    G    VN +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYV 190
Query: 242 TFTA--DGHSVLSASSDGTVKMWNLKTTECTSTFK 274
            +    D   +++AS D T+K+W+ +T  C +T +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/215 (19%), Positives = 89/215 (41%), Gaps = 4/215 (1%)
Query: 138 LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVT 197
           +K   +  F    + V  + +      + +   SG+V++W   T   +R ++   +  V 
Sbjct: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVR 59
Query: 198 CIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG 257
             +F    + I+  S D  +R+    +G+ + +F  H  ++  I        VLS S D 
Sbjct: 60  AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVR 316
           TVK+WN +        ++    +  V  +   PK+   F       TV + ++ Q     
Sbjct: 120 TVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 317 SLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
           +L++G+  G +++     P   ++    +D+ + +
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 9/185 (4%)
Query: 89  TQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML 148
           +Q +  IK      +ECA F+P+GQ +  G +D    ++N ++ +  +D           
Sbjct: 98  SQKTHAIKLHCPWVMECA-FAPNGQSVACGGLDSACSIFNLSS-QADRDGNMPVSRVLTG 155
Query: 149 MEEAVMSLAYSRDSEM-LASGSQSGKVKIWKIATGQCLR----KLEKAHSLGVTCIQFSR 203
            +    S  Y  D E  L +GS      +W + TGQ +     +    H+  V  +  + 
Sbjct: 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215
Query: 204 DNSQI-LTASFDTYVRIHGLK-SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
            N+ + ++ S DT VR+  L+ + + ++ + GH   +N + F  DG    + S DGT ++
Sbjct: 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275
Query: 262 WNLKT 266
           ++++T
Sbjct: 276 FDMRT 280

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ------CLRKLEKAHSLGVTCIQFSRDN 205
           A  S   + DS +L SGS+   V IWK+   +         K    H+  V+ +  S++N
Sbjct: 29  AGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88
Query: 206 SQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
              +++S+D  +R+  L++G   K F GH S V  + F+ D   +LSA ++  +K+WN+
Sbjct: 89  CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 66  PGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIE 125
           P     L+ G+  + +     Y TQ+  +    +++ V   +F     ++I GS D  I 
Sbjct: 26  PWVLTTLYSGRVELWN-----YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 126 VWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL 185
           V+N+ TG+  K + ++A  ++      + S+A       + SGS    VK+W       L
Sbjct: 81  VFNYNTGE--KVVDFEAHPDY------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 RKLEKAHSLGVTCIQFS-RDNSQILTASFDTYVRIHGLKSGKMLKEFR---GHSSFVNDI 241
            +  + H   V C+ F+ +D S   +   D  V++  L  G+    F    G    VN +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYV 190
Query: 242 TFTA--DGHSVLSASSDGTVKMWNLKTTECTSTFK 274
            +    D   +++AS D T+K+W+ +T  C +T +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 4/182 (2%)
Query: 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE 230
           SG+V++W   T   +R ++   +  V   +F    + I+  S D  +R+    +G+ + +
Sbjct: 34  SGRVELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP 290
           F  H  ++  I        VLS S D TVK+WN +        ++    +  V  +   P
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNP 150
Query: 291 KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           K+   F       TV + ++ Q     +L++G+  G +++     P   ++    +D+ +
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 350 VV 351
            +
Sbjct: 211 KI 212

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 66  PGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIE 125
           P     L+ G+  + +     Y TQ+  +    +++ V   +F     ++I GS D  I 
Sbjct: 26  PWVLTTLYSGRVEIWN-----YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 126 VWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL 185
           V+N+ TG+  K + ++A  ++      + S+A       + SGS    VK+W       L
Sbjct: 81  VFNYNTGE--KVVDFEAHPDY------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 RKLEKAHSLGVTCIQFS-RDNSQILTASFDTYVRIHGLKSGKMLKEFR---GHSSFVNDI 241
            +  + H   V C+ F+ +D S   +   D  V++  L  G+    F    G    VN +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYV 190
Query: 242 TFTA--DGHSVLSASSDGTVKMWNLKTTECTSTFK 274
            +    D   +++AS D T+K+W+ +T  C +T +
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 4/182 (2%)
Query: 171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE 230
           SG+V+IW   T   +R ++   +  V   +F    + I+  S D  +R+    +G+ + +
Sbjct: 34  SGRVEIWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP 290
           F  H  ++  I        VLS S D TVK+WN +        ++    +  V  +   P
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNP 150
Query: 291 KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
           K+   F       TV + ++ Q     +L++G+  G +++     P   ++    +D+ +
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 350 VV 351
            +
Sbjct: 211 KI 212

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 168 GSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM 227
           G+  G +K+   +     R++++AH   +T ++F      ++++S D  ++I  +K G  
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIH 287
            +   GH + V DI     G +VLSAS DGT+++W   T     TF         VNSI 
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 230
Query: 288 LL 289
           L 
Sbjct: 231 LF 232

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 168 GSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM 227
           G+  G +K+   +     R++++AH   +T ++F      ++++S D  ++I  +K G  
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIH 287
            +   GH + V DI     G +VLSAS DGT+++W   T     TF         VNSI 
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233
Query: 288 LL 289
           L 
Sbjct: 234 LF 235

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 108 FSPDGQYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
           +  D + L++ S DG + +W+ +TT K+             L    VM+ AY+     +A
Sbjct: 63  WGTDSRLLVSASQDGKLIIWDSYTTNKVHA---------IPLRSSWVMTCAYAPSGNYVA 113
Query: 167 SGSQSGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
            G       I+ + T +   ++ +    H+  ++C +F  DN QI+T+S DT   +  ++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE 172
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
           +G+    F GH+  V  ++   D    +S + D + K+W+++   C  TF     SDI  
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDI-- 229
Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
           N+I   P N   F   +   T  + +++  
Sbjct: 230 NAICFFP-NGNAFATGSDDATCRLFDLRAD 258

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 108 FSPDGQYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
           +  D + L++ S DG + +W+ +TT K+             L    VM+ AY+     +A
Sbjct: 74  WGTDSRLLVSASQDGKLIIWDSYTTNKVHA---------IPLRSSWVMTCAYAPSGNYVA 124
Query: 167 SGSQSGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
            G       I+ + T +   ++ +    H+  ++C +F  DN QI+T+S DT   +  ++
Sbjct: 125 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE 183
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
           +G+    F GH+  V  ++   D    +S + D + K+W+++   C  TF     SDI  
Sbjct: 184 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDI-- 240
Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
           N+I   P N   F   +   T  + +++  
Sbjct: 241 NAICFFP-NGNAFATGSDDATCRLFDLRAD 269

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 108 FSPDGQYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
           +  D + L++ S DG + +W+ +TT K+             L    VM+ AY+     +A
Sbjct: 63  WGTDSRLLVSASQDGKLIIWDSYTTNKVHA---------IPLRSSWVMTCAYAPSGNYVA 113
Query: 167 SGSQSGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
            G       I+ + T +   ++ +    H+  ++C +F  DN QI+T+S DT   +  ++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE 172
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
           +G+    F GH+  V  ++   D    +S + D + K+W+++   C  TF     SDI  
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDI-- 229
Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
           N+I   P N   F   +   T  + +++  
Sbjct: 230 NAICFFP-NGNAFATGSDDATCRLFDLRAD 258

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 108 FSPDGQYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
           +  D + L++ S DG + +W+ +TT K+             L    VM+ AY+     +A
Sbjct: 63  WGTDSRLLLSASQDGKLIIWDSYTTNKVHA---------IPLRSSWVMTCAYAPSGNYVA 113
Query: 167 SGSQSGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
            G       I+ + T +   ++ +    H+  ++C +F  DN QI+T+S DT   +  ++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE 172
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
           +G+    F GH+  V  ++   D    +S + D + K+W+++   C  TF     SDI  
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDI-- 229
Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
           N+I   P N   F   +   T  + +++  
Sbjct: 230 NAICFFP-NGNAFATGSDDATCRLFDLRAD 258

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 108 FSPDGQYLITGSVDGFIEVWN-FTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
           +  D + L++ S DG + +W+ +TT K+             L    VM+ AY+     +A
Sbjct: 63  WGTDSRLLLSASQDGKLIIWDSYTTNKVHA---------IPLRSSWVMTCAYAPSGNYVA 113
Query: 167 SGSQSGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
            G       I+ + T +   ++ +    H+  ++C +F  DN QI+T+S DT   +  ++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE 172
Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
           +G+    F GH+  V  ++   D    +S + D + K+W+++   C  TF     SDI  
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDI-- 229
Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
           N+I   P N   F   +   T  + +++  
Sbjct: 230 NAICFFP-NGNAFATGSDDATCRLFDLRAD 258

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 14/200 (7%)
Query: 86  KYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDN 145
           K+ +   +  KF     V   R++PDG    +   DG I ++N   G      +  +  N
Sbjct: 181 KFKSTFGEHTKF-----VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235
Query: 146 FMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTC----IQF 201
            +    +V  L +S D   +AS S    +KIW +AT     K+EK   +G       +  
Sbjct: 236 -VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT----LKVEKTIPVGTRIEDQQLGI 290
Query: 202 SRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
                 +++ S + ++     + G + +   GH+  +  ++ +ADG ++ SA ++G +  
Sbjct: 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINS 350
Query: 262 WNLKTTECTSTFKSLGASDI 281
           W++ T      F  + A+ I
Sbjct: 351 WDISTGISNRVFPDVHATMI 370

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
           + CA ++P G  +  G +D    V+  T     K+    A+   + M    +S     +S
Sbjct: 110 MACA-YAPSGCAIACGGLDNKCSVYPLT---FDKNENMAAKKKSVAMHTNYLSACSFTNS 165
Query: 163 EM-LASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF--SRDNSQILTASFDTYVRI 219
           +M + + S  G   +W + +GQ L+     H   V C+    S   +  ++   D    +
Sbjct: 166 DMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK 265
             ++SG+ ++ F  H S VN + +   G +  S S D T ++++L+
Sbjct: 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Query: 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTC-----IQFSRDNSQ 207
           V+ + + +D   + S SQ GKV +W   T        K H++ + C       ++     
Sbjct: 67  VLCMDWCKDKRRIVSSSQDGKVIVWDSFT------TNKEHAVTMPCTWVMACAYAPSGCA 120
Query: 208 ILTASFDTYVRIHGL---KSGKML---KEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
           I     D    ++ L   K+  M    K    H+++++  +FT     +L+AS DGT  +
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180
Query: 262 WNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVV---CNKTNTVVIMNMQGQIVRSL 318
           W++++ +   +F   GA    V  + L P  T +  V   C+K   V  M   GQ V++ 
Sbjct: 181 WDVESGQLLQSFHGHGAD---VLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAF 236
Query: 319 SS 320
            +
Sbjct: 237 ET 238

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 35/239 (14%)
Query: 35  LVGEVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQ 94
           L+G V   P SR   L              P GT +    G   ++    E         
Sbjct: 7   LLGRVPAHPDSRCWFLAWN-----------PAGTLLASCGGDRRIRIWGTEGDSWICKSV 55
Query: 95  IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM----- 149
           +  G +  V    +SP G YL + S D    +W             + QD+F  +     
Sbjct: 56  LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------------KNQDDFECVTTLEG 103
Query: 150 -EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG---QCLRKLEKAHSLGVTCIQFSRDN 205
            E  V S+A++    +LA+ S+   V +W++      +C+  L  +H+  V  + +    
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQ 162
Query: 206 SQILTASFDTYVRIHGLKSGKML--KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
             + +AS+D  V+++  +    +      GH S V  + F   G  + S S D TV++W
Sbjct: 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 101 SHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS 159
           S V    FSPD G+++IT   D  I  ++  +G+    LKY  +D+   ++  + +L++ 
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---LKY-IEDDQEPVQGGIFALSW- 261
Query: 160 RDSEMLASGSQSGKVKIWKIATGQCLRK--LEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
            DS+  A+      +++W + T +C++K  L+K           +  N +I++ S D  +
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
             + L   ++LK   GH+  +  +T     + ++S S DG +  W
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIXEW 362

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 98  GSKSHVECARF--SPDGQYLITGSVDGFIEVWNFTTGKIRKD---------LKYQAQDNF 146
           G  S V C       + +Y++TGS D  + VW         D         + +  ++N 
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 147 MLMEEAVMSLAYSR----DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS 202
             +      +A  R       ++ SGS    + +W +A  +CL  L   H+  +    + 
Sbjct: 261 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYD 319
Query: 203 RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
            +  + ++AS DT +RI  L++G+++   +GH++ V  +  +     ++SA++DG+++ W
Sbjct: 320 HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Query: 263 N 263
           +
Sbjct: 378 D 378

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 196 VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS 255
           +TC+QF  +++ ++T + D  +R++   + K L +  GH   V  + + A G  ++S S+
Sbjct: 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310
           D TV++W++K   CT  F+   ++   ++ +    KN ++ V  ++ NT+ +  +
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY--KNIKYIVTGSRDNTLHVWKL 234

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 101 SHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS 159
           S V    FSPD G+++IT   D  I  ++  +G+    LKY  +D+   ++  + +L++ 
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---LKY-IEDDQEPVQGGIFALSW- 261
Query: 160 RDSEMLASGSQSGKVKIWKIATGQCLRK--LEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
            DS+  A+      +++W + T +C++K  L+K           +  N +I++ S D  +
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
             + L   ++LK   GH+  +  +T     + ++S S DG +  W+
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWS 363

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA------- 152
           ++ +   +++ DG ++I+  V+    +WN  +G + +  + +      +  E        
Sbjct: 149 RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 208
Query: 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS 212
            + + +  D + +  G + G + +++I       KL   H   ++ ++F+  N  +L+AS
Sbjct: 209 GVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTGKLIGHHGP-ISVLEFNDTNKLLLSAS 266
Query: 213 FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK 265
            D  +RI    +G     F GHS  +   ++  D   V+S S DG+V++W+LK
Sbjct: 267 DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLK 318

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 18/181 (9%)
Query: 98  GSKSHVECARF--SPDGQYLITGSVDGFIEVWNFTTGKIRKD---------LKYQAQDN- 145
           G  S V C       + +Y++TGS D  + VW         D         + +  ++N 
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 146 ---FMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS 202
               +L          S    ++ SGS    + +W +A  +CL  L   H+  +    + 
Sbjct: 261 YFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILS-GHTDRIYSTIYD 319
Query: 203 RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
            +  + ++AS DT +RI  L++G++    +GH++ V  +  +     ++SA++DG+++ W
Sbjct: 320 HERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Query: 263 N 263
           +
Sbjct: 378 D 378

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 196 VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS 255
           +TC+QF  +++ ++T + D  +R++   + K L +  GH   V  + + A G  ++S S+
Sbjct: 125 ITCLQF--EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310
           D TV++W++K   CT  F+   ++   ++ +    KN ++ V  ++ NT+ +  +
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY--KNIKYIVTGSRDNTLHVWKL 234

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 31/189 (16%)
Query: 103 VECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD 161
           VE  ++ P D     + S D  ++VW+  T         Q  D F   EE V S   S  
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNT--------LQTADVFNF-EETVYSHHMSPV 152
Query: 162 SE---MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYV 217
           S    ++A G++  KV++  + +G C   L+  H   +  + +S     IL TAS D+ V
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRV 211
Query: 218 RI----------------HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
           ++                +G KS  +      H+  VN + FT+DG  +L+  +D  +++
Sbjct: 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271
Query: 262 WNLKTTECT 270
           WN    E T
Sbjct: 272 WNSSNGENT 280

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 150 EEAVMSLAYSRDS---EMLASGSQSGKVKIWKIA-TGQCLRKLEKAHSLGVTCIQFSRDN 205
           ++++  L++S  +     L +GS +  V+ W++  +GQ + K ++ H+  V  + +S D 
Sbjct: 39  DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98
Query: 206 SQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFT-ADGHS-VLSASSDGTVKMWN 263
           S++ TAS D   ++  L S + + +   H + V  I +  A  +S V++ S D T+K W+
Sbjct: 99  SKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Query: 264 LKTTE 268
            +++ 
Sbjct: 158 TRSSN 162

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 6/176 (3%)
Query: 92  SKQIKFGSKSHVECA-RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME 150
           ++QI   +   V CA   S   +++ TG   G ++VW+ +    +  +   +Q + +  +
Sbjct: 42  ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV---SQLDCLNRD 97
Query: 151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSL-GVTCIQFSRDNSQIL 209
             + S     D   L  G ++  + IW +A      K E   S      +  S D+    
Sbjct: 98  NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 210 TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLK 265
           +   D  + +  L +  ++++F+GH+   + I  + DG  + +   D TV+ W+L+
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGV---TCIQFSRDNSQILTASFDTYVRIH 220
           ++ SGS     K+WK   G  +  L+ AH+  V     + FS +  + LTAS D  +++ 
Sbjct: 116 VVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSEN--KFLTASADKTIKL- 169
Query: 221 GLKSGKMLKEFRG-HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS 279
             ++ K++K F G H+  V  +    DGH  +S S+DG +K+ +  T +   T++     
Sbjct: 170 -WQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDXHTGDVLRTYE---GH 224
Query: 280 DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ 311
           +  V  I LLP      V C +  TV I + +
Sbjct: 225 ESFVYCIKLLPNG--DIVSCGEDRTVRIWSKE 254

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query: 124 IEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ 183
           + VWN  +G +   L    +  +      V S+ +S D   L+ G  +G V I+ + +  
Sbjct: 115 VYVWNADSGSVSA-LAETDESTY------VASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167
Query: 184 CLRKLEKAHSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLK-SGKMLKEFRGHSSFVNDI 241
            LR +   H   V C+ ++R    +L++ S    +  H ++ +   +   +GHSS V  +
Sbjct: 168 KLRTM-AGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223
Query: 242 TFTADGHSVLSASSDGTVKMWNLKTT 267
            + +DG  + S  +D  V++W+ +++
Sbjct: 224 AWRSDGLQLASGGNDNVVQIWDARSS 249

>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein Ski8p Length = 407

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 24/142 (16%)
Query: 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSL-----GVTCIQFSRDNSQILTA----SFD 214
           ++A+G  +G V+I +++T + L   E  HS+      +  ++FS   S +  A    SF 
Sbjct: 209 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 268
Query: 215 TYV--------RIHGLK-----SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM 261
                      RI  L      S   L EF  HSS+V  ++F   G ++ SA  DG ++ 
Sbjct: 269 CITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRF 327
Query: 262 WNLKTTECTSTFKSLGASDIAV 283
           W++KT E  +T  ++   DI +
Sbjct: 328 WDVKTKERITTL-NMHCDDIEI 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	482
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.69
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.69
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.64
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.6
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.59
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.58
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.57
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.52
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.45
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.45
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.44
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.4
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.38
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.37
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.33
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.31
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.28
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.28
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.25
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.25
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.24
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.24
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.23
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.23
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.2
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.2
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.19
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.16
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.15
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.15
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.14
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.13
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.12
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.11
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.1
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.07
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.06
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.0
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.98
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.98
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.98
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.95
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.94
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.94
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.91
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.9
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.86
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.85
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.84
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.84
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.8
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.77
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.77
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.77
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.73
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.73
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.7
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.67
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.6
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.5
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.49
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.48
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.46
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.44
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.41
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.4
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.39
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.35
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.35
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.31
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.28
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.28
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.21
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.2
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.19
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.16
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.13
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.13
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.13
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.1
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.92
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.87
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.87
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.86
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.86
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.78
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.78
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.76
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.7
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.69
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.63
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.59
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.54
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.48
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.43
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.43
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.42
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.4
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.39
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.38
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.32
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.31
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.31
3ott_A	758	Two-component system sensor histidine kinase; beta	97.29
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.27
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.24
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.05
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.0
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.99
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.94
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.94
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.89
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.76
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.72
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.71
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.69
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.66
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.61
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.56
3ott_A	758	Two-component system sensor histidine kinase; beta	96.52
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.51
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.5
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.98
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.91
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.45
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	93.95
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.51
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.43
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	93.06
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	90.84
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	90.84
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	90.71
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	89.79
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.12
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	88.72
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.35
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	87.87
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	87.29
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	86.28
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	82.66
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.87

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-48  Score=369.47  Aligned_cols=287  Identities=22%  Similarity=0.394  Sum_probs=260.5

Q ss_pred             eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      ...+.+|.++|++++|+|++++|++|+.||+|+|||+.+++....+        .+|...|.+++|+|++++|++|+.|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l--------~~h~~~V~~v~~~~~~~~l~sgs~D~  172 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--------KGHTDSVQDISFDHSGKLLASCSADM  172 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE--------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE--------eccCCcEEEEEEcCCCCEEEEEeCCC
Confidence            3455699999999999999999999999999999999988765544        34688999999999999999999999


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      +|++||+.+++.+..+ .+|...|.+++|+|++.+|++|+.|+.|++||+++++++..+.+|...|.++.++|++.+|++
T Consensus       173 ~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s  251 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS  251 (410)
T ss_dssp             CCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence            9999999999988888 689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC-------------------CCEEEEEeCCCeEEEEEc-CC
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN-------------------TEHFVVCNKTNTVVIMNM-QG  312 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-------------------~~~l~~~~~d~~i~i~d~-~~  312 (482)
                      ++.|+.|++||++++++...+.   .|...|.+++|+|++                   +.++++++.|+.|++||+ .+
T Consensus       252 ~s~D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~  328 (410)
T 1vyh_C          252 CSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  328 (410)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EcCCCeEEEEECCCCceeeEec---CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999999999999888877   888999999999963                   268999999999999999 57


Q ss_pred             cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccC
Q psy8448         313 QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADIN  392 (482)
Q Consensus       313 ~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (482)
                      ..+..+..+   ...|.+++|+|+|++|++|+.||.|+                  +|+..++                 
T Consensus       329 ~~~~~~~~h---~~~v~~v~~~~~g~~l~s~s~D~~i~------------------vwd~~~~-----------------  370 (410)
T 1vyh_C          329 MCLMTLVGH---DNWVRGVLFHSGGKFILSCADDKTLR------------------VWDYKNK-----------------  370 (410)
T ss_dssp             EEEEEEECC---SSCEEEEEECSSSSCEEEEETTTEEE------------------EECCTTS-----------------
T ss_pred             ceEEEEECC---CCcEEEEEEcCCCCEEEEEeCCCeEE------------------EEECCCC-----------------
Confidence            777777765   77899999999999999999999999                  5555544                 


Q ss_pred             CCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEE
Q psy8448         393 NGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGT  472 (482)
Q Consensus       393 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  472 (482)
                                    +.                             ..          .+.+|...|++++|+|++++|||
T Consensus       371 --------------~~-----------------------------~~----------~~~~h~~~v~~l~~~~~~~~l~s  397 (410)
T 1vyh_C          371 --------------RC-----------------------------MK----------TLNAHEHFVTSLDFHKTAPYVVT  397 (410)
T ss_dssp             --------------CC-----------------------------CE----------EEECCSSCEEEEEECSSSSCEEE
T ss_pred             --------------ce-----------------------------EE----------EEcCCCCcEEEEEEcCCCCEEEE
Confidence                          22                             22          67789999999999999999999


Q ss_pred             EecCceeecC
Q psy8448         473 YSEDGLLRFS  482 (482)
Q Consensus       473 ~~~Dg~i~iW  482 (482)
                      |+.||+|+||
T Consensus       398 gs~D~~i~vW  407 (410)
T 1vyh_C          398 GSVDQTVKVW  407 (410)
T ss_dssp             EETTSEEEEE
T ss_pred             EeCCCcEEEE
Confidence            9999999999

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.6e-47  Score=353.27  Aligned_cols=286  Identities=20%  Similarity=0.318  Sum_probs=252.0

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      ..+.+|.+.|++++|+|++++|++|+.||+|++||+.+++....+..        |...|.+++|+|++++|++++.|+.
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~  120 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--------RSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec--------CCccEEEEEECCCCCEEEEEeCCCe
Confidence            44569999999999999999999999999999999998877655443        4688999999999999999999999


Q ss_pred             EEEEEcCCCe----EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         174 VKIWKIATGQ----CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       174 i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      |++|++.+++    ....+ .+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++++
T Consensus       121 v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  198 (340)
T 1got_B          121 CSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             EEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EEEEECccCCCcceeEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence            9999997653    34445 68999999999998774 899999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCE
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDF  328 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v  328 (482)
                      |++++.|+.|++||++++++...+.   +|...|.+++|+|++ .++++++.|+.|++||++ ++.+..+. +..+...|
T Consensus       199 l~sg~~d~~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v  273 (340)
T 1got_B          199 FVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI  273 (340)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCE
T ss_pred             EEEEeCCCcEEEEECCCCeeEEEEc---CCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccce
Confidence            9999999999999999999888887   889999999999998 899999999999999994 55555554 33335679


Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCC
Q psy8448         329 LCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKL  408 (482)
Q Consensus       329 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  408 (482)
                      .+++|+|+|++|++|+.||.|+                  +|+..++                               ..
T Consensus       274 ~~~~~s~~g~~l~~g~~d~~i~------------------vwd~~~~-------------------------------~~  304 (340)
T 1got_B          274 TSVSFSKSGRLLLAGYDDFNCN------------------VWDALKA-------------------------------DR  304 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEE------------------EEETTTC-------------------------------CE
T ss_pred             EEEEECCCCCEEEEECCCCeEE------------------EEEcccC-------------------------------cE
Confidence            9999999999999999999999                  5555444                               11


Q ss_pred             CchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         409 PEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                   ..          .+.+|.+.|++++|+|+|++||||+.||+|+||
T Consensus       305 -----------------------------~~----------~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          305 -----------------------------AG----------VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             -----------------------------EE----------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             -----------------------------ee----------EeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence                                         22          667899999999999999999999999999999

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-47  Score=350.23  Aligned_cols=286  Identities=17%  Similarity=0.308  Sum_probs=253.9

Q ss_pred             eecCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC
Q psy8448          95 IKFGSKSHVECARFSPD----GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ  170 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~  170 (482)
                      ...+|.+.|++++|+|+    +++|++|+.|++|+||++.+++...      ...+.+|...|.+++|++++.++++++.
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~------~~~l~gh~~~v~~~~~~~~~~~l~s~s~  100 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL------QWSLEGHQLGVVSVDISHTLPIAASSSL  100 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE------EEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee------eeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence            34599999999999984    6799999999999999998765322      2234568899999999999999999999


Q ss_pred             CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448         171 SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  250 (482)
                      |+.|++||+.+++.+..+ ..+...+.+++|+|++++|++++.|+.|++||+++++....+..|...|.+++|+|++++|
T Consensus       101 D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             TSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             CCcEEEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence            999999999999998888 5778889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448         251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~  329 (482)
                      ++++.||.|++||+++++.+..+.   +|..+|.+++|+|++ .+|++++.|+.|++||+ .++....+..+   ...|.
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~v~  252 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGH---ASWVL  252 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEC---CCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCC---SSCEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEc---ccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCC---CCceE
Confidence            999999999999999999888877   888999999999998 89999999999999999 56677777655   77899


Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCC
Q psy8448         330 CCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLP  409 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  409 (482)
                      +++|+|++++|++++.|+.|+                  +|++.++                               +. 
T Consensus       253 ~~~~sp~~~~l~s~s~D~~v~------------------iwd~~~~-------------------------------~~-  282 (321)
T 3ow8_A          253 NVAFCPDDTHFVSSSSDKSVK------------------VWDVGTR-------------------------------TC-  282 (321)
T ss_dssp             EEEECTTSSEEEEEETTSCEE------------------EEETTTT-------------------------------EE-
T ss_pred             EEEECCCCCEEEEEeCCCcEE------------------EEeCCCC-------------------------------EE-
Confidence            999999999999999999999                  5555555                               11 


Q ss_pred             chhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         410 EKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                  ..          .+.+|.+.|.+++|+|++++|++++.||+|+||
T Consensus       283 ----------------------------~~----------~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          283 ----------------------------VH----------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY  317 (321)
T ss_dssp             ----------------------------EE----------EECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             ----------------------------EE----------EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence                                        22          566899999999999999999999999999998

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-46  Score=348.85  Aligned_cols=287  Identities=21%  Similarity=0.300  Sum_probs=250.4

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      ..+.+|.+.|++++|+|++++|++|+.||+|+|||..+++....+..        |...|.+++|+|++.+|++++.|+.
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~--------~~~~v~~~~~sp~g~~lasg~~d~~  129 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM--------PCTWVMACAYAPSGCAIACGGLDNK  129 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--------SSSCCCEEEECTTSSEEEEESTTSE
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec--------CCCCEEEEEECCCCCEEEEeeCCCC
Confidence            34569999999999999999999999999999999988876655443        3578999999999999999999999


Q ss_pred             EEEEEcCCC------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC--
Q psy8448         174 VKIWKIATG------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA--  245 (482)
Q Consensus       174 i~iwd~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~--  245 (482)
                      +++|++...      .....+ ..|...|.+++|+|++..|++++.|+.|++||+++++.+..+.+|...|.+++|+|  
T Consensus       130 i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  208 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE  208 (354)
T ss_dssp             EEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred             EEEEEEeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence            999998643      223444 57999999999999999999999999999999999999999999999999999987  


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCccc
Q psy8448         246 DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKRE  324 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~  324 (482)
                      ++++|++++.||.|++||+++++++..+.   .|...|.+++|+|++ .++++++.|+.|++||++ ++.+..+.. ...
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~  283 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFE---THESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYSK-ESI  283 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC-TTC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC-CCc
Confidence            56899999999999999999999888877   889999999999998 899999999999999995 445544443 223


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccc
Q psy8448         325 GGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQ  404 (482)
Q Consensus       325 ~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (482)
                      ...+.+++|+|+|++|++|+.|+.|+                  +|+..++                             
T Consensus       284 ~~~~~~~~~s~~g~~l~~g~~d~~i~------------------vwd~~~~-----------------------------  316 (354)
T 2pbi_B          284 IFGASSVDFSLSGRLLFAGYNDYTIN------------------VWDVLKG-----------------------------  316 (354)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEE------------------EEETTTC-----------------------------
T ss_pred             ccceeEEEEeCCCCEEEEEECCCcEE------------------EEECCCC-----------------------------
Confidence            45789999999999999999999999                  5555555                             


Q ss_pred             ccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         405 SLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       405 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                        ..                             ..          .+.+|.+.|++++|+|||++||||+.||+|+||
T Consensus       317 --~~-----------------------------~~----------~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          317 --SR-----------------------------VS----------ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             --SE-----------------------------EE----------EECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             --ce-----------------------------EE----------EEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence              11                             22          566899999999999999999999999999999

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-45  Score=335.16  Aligned_cols=285  Identities=19%  Similarity=0.296  Sum_probs=247.4

Q ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448          95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      .+.+|.+.|++++|+|++++|++|+.||+|++||+.+++....+.        .|..+|.+++|+|++++|++|+.|+.|
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee--------ccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            345899999999999999999999999999999999887665544        357899999999999999999999999


Q ss_pred             EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcC-CCCEEEE
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTA-DGHSVLS  252 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~~  252 (482)
                      ++||+.+++.+..+ ..|...|.+++|+|++++|++|+.|+.|++||++++ .....+.+|...|.+++|+| ++..|++
T Consensus        80 ~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s  158 (304)
T 2ynn_A           80 RVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (304)
T ss_dssp             EEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred             EEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence            99999999999888 689999999999999999999999999999999887 45567889999999999999 6789999


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC-CCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEE
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK-NTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLC  330 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~  330 (482)
                      ++.|+.|++||++++.....+..  .+...+..+.|+|. ...++++++.|+.|++||+ .++.+..+..+   ...|.+
T Consensus       159 gs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h---~~~v~~  233 (304)
T 2ynn_A          159 GCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVSF  233 (304)
T ss_dssp             EETTSEEEEEETTCSSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC---SSCEEE
T ss_pred             EeCCCeEEEEECCCCCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC---CCCEEE
Confidence            99999999999988776555542  56678899999873 2279999999999999999 57777777765   778999


Q ss_pred             EEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCc
Q psy8448         331 CTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPE  410 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  410 (482)
                      ++|+|++++|++|+.||.|+                  +|+..++                               ++  
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~------------------iWd~~~~-------------------------------~~--  262 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLK------------------IWNSSTY-------------------------------KV--  262 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEE------------------EEETTTC-------------------------------CE--
T ss_pred             EEECCCCCEEEEEcCCCeEE------------------EEECCCC-------------------------------ce--
Confidence            99999999999999999999                  5666555                               22  


Q ss_pred             hhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcc--eEEEEecCceeec
Q psy8448         411 KKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQN--LLGTYSEDGLLRF  481 (482)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~s~~~Dg~i~i  481 (482)
                                                 ..          .+..|...+.+++|+|++.  +||+|++||.+.+
T Consensus       263 ---------------------------~~----------~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~  298 (304)
T 2ynn_A          263 ---------------------------EK----------TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL  298 (304)
T ss_dssp             ---------------------------EE----------EECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred             ---------------------------ee----------eccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence                                       33          5667888899999999875  6899998887653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.9e-45  Score=364.59  Aligned_cols=368  Identities=17%  Similarity=0.198  Sum_probs=269.2

Q ss_pred             CCCCceeecc-CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCcee--ecccc
Q psy8448          64 LPPGTTIDLF-RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIR--KDLKY  140 (482)
Q Consensus        64 ~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~  140 (482)
                      .|+|..+++. .+.+.+|+.....     ....+.+|...|++++|+|+|++||+|+.||+|+|||+.+++..  ..+..
T Consensus        27 spdg~~l~~~~~~~v~l~~~~~~~-----~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~  101 (611)
T 1nr0_A           27 TPAGDKIQYCNGTSVYTVPVGSLT-----DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV  101 (611)
T ss_dssp             CTTSSEEEEEETTEEEEEETTCSS-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred             CCCCCEEEeCCCCEEEEecCCCcc-----cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecc
Confidence            3555555443 3446667654322     22344599999999999999999999999999999998654321  11110


Q ss_pred             ------------------------------------ccccccccccccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCe
Q psy8448         141 ------------------------------------QAQDNFMLMEEAVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQ  183 (482)
Q Consensus       141 ------------------------------------~~~~~~~~h~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~  183 (482)
                                                          .....+.+|...|++++|+|++. .|++++.|++|++||..+++
T Consensus       102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~  181 (611)
T 1nr0_A          102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK  181 (611)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence                                                01123567899999999999987 59999999999999999988


Q ss_pred             EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee-------ccccceeEEEEcCCCCEEEEEeCC
Q psy8448         184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-------GHSSFVNDITFTADGHSVLSASSD  256 (482)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~~~~d  256 (482)
                      ....+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.       +|.+.|.+++|+|++++|++++.|
T Consensus       182 ~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D  260 (611)
T 1nr0_A          182 FKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD  260 (611)
T ss_dssp             EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred             Eeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC
Confidence            88888 7899999999999999999999999999999999999888884       799999999999999999999999


Q ss_pred             CcEEEEECCCCceeeeee----------------------------------------ccCCCccceeEEEEcCCCCCEE
Q psy8448         257 GTVKMWNLKTTECTSTFK----------------------------------------SLGASDIAVNSIHLLPKNTEHF  296 (482)
Q Consensus       257 g~i~i~d~~~~~~~~~~~----------------------------------------~~~~~~~~v~~i~~~~~~~~~l  296 (482)
                      ++|++||++++++...+.                                        ...+|...|.+++|+|++ .++
T Consensus       261 ~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l  339 (611)
T 1nr0_A          261 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTL  339 (611)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEE
T ss_pred             CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEE
Confidence            999999999887655432                                        123688899999999998 899


Q ss_pred             EEEeCCCeEEEEEcC-CcEEEEecCCc-----------------------------------------------------
Q psy8448         297 VVCNKTNTVVIMNMQ-GQIVRSLSSGK-----------------------------------------------------  322 (482)
Q Consensus       297 ~~~~~d~~i~i~d~~-~~~~~~~~~~~-----------------------------------------------------  322 (482)
                      ++++.|+.|++||+. +.....+...+                                                     
T Consensus       340 ~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (611)
T 1nr0_A          340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV  419 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred             EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence            999999999999984 43322211000                                                     


Q ss_pred             --------------------------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccc
Q psy8448         323 --------------------------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGV  376 (482)
Q Consensus       323 --------------------------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  376 (482)
                                                .+...+.+++|+|||++|++|+.|+.|++|++.....     ..+.. ....+.
T Consensus       420 s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-----~~~~~-~~h~~~  493 (611)
T 1nr0_A          420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-----SEVKT-IVHPAE  493 (611)
T ss_dssp             CTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-----EEEEE-EECSSC
T ss_pred             eCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-----eeeec-cCCCCc
Confidence                                      0123466788888888888888888888777653110     00000 111111


Q ss_pred             eeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCc--ceec
Q psy8448         377 SLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHE--PEVH  454 (482)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h  454 (482)
                      ......++++.  .++++..|..++.|+...                         .           +.+...  +.+|
T Consensus       494 v~~v~fspdg~--~las~s~d~~v~~w~~~~-------------------------~-----------~~~~~~~~~~~H  535 (611)
T 1nr0_A          494 ITSVAFSNNGA--FLVATDQSRKVIPYSVAN-------------------------N-----------FELAHTNSWTFH  535 (611)
T ss_dssp             EEEEEECTTSS--EEEEEETTSCEEEEEGGG-------------------------T-----------TEESCCCCCCCC
T ss_pred             eEEEEECCCCC--EEEEEcCCCCEEEEEcCC-------------------------C-----------Cceeeeeeeeec
Confidence            11222344443  244555555555543211                         0           111112  3459


Q ss_pred             ccceeeccccCCcceEEEEecCceeecC
Q psy8448         455 EKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       455 ~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      ...|++++|+|||++||||+.||+|+||
T Consensus       536 ~~~V~~v~fspdg~~lasgs~D~~v~lW  563 (611)
T 1nr0_A          536 TAKVACVSWSPDNVRLATGSLDNSVIVW  563 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ccceeEEEECCCCCEEEEEECCCcEEEE
Confidence            9999999999999999999999999999

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.5e-45  Score=332.05  Aligned_cols=291  Identities=28%  Similarity=0.516  Sum_probs=253.7

Q ss_pred             ceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448          92 SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus        92 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      ....+.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.        +|...|.+++|+|++++|++++.|
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~d   86 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSDSNLLVSASDD   86 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--------cCCCceEEEEEcCCCCEEEEECCC
Confidence            344556999999999999999999999999999999998887655443        467899999999999999999999


Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      +.|++||+++++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|+
T Consensus        87 ~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV  165 (312)
T ss_dssp             SEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence            99999999999998888 68999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEE
Q psy8448         252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLC  330 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~  330 (482)
                      +++.||.|++||+++++....+..  .+..++..++|+|++ .++++++.|+.|++||+ +++.+..+..+......+..
T Consensus       166 ~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  242 (312)
T 4ery_A          166 SSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA  242 (312)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECC--SSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred             EEeCCCcEEEEECCCCceeeEEec--cCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE
Confidence            999999999999999987776642  556789999999998 89999999999999999 57777777665433333444


Q ss_pred             EEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCc
Q psy8448         331 CTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPE  410 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  410 (482)
                      ....+++.+|++|+.||.|+                  +|+..++                               ++  
T Consensus       243 ~~~~~~~~~l~sg~~dg~i~------------------vwd~~~~-------------------------------~~--  271 (312)
T 4ery_A          243 NFSVTGGKWIVSGSEDNLVY------------------IWNLQTK-------------------------------EI--  271 (312)
T ss_dssp             EEECSSSCEEEECCTTSCEE------------------EEETTTC-------------------------------CE--
T ss_pred             EEEeCCCcEEEEECCCCEEE------------------EEECCCc-------------------------------hh--
Confidence            44457889999999999999                  5555555                               22  


Q ss_pred             hhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEe--cCceeecC
Q psy8448         411 KKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYS--EDGLLRFS  482 (482)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~--~Dg~i~iW  482 (482)
                                                 ..          .+.+|.+.|.+++|+|++++|++++  .||+|++|
T Consensus       272 ---------------------------~~----------~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          272 ---------------------------VQ----------KLQGHTDVVISTACHPTENIIASAALENDKTIKLW  308 (312)
T ss_dssp             ---------------------------EE----------EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred             ---------------------------hh----------hhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence                                       33          6678999999999999999999987  69999999

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.4e-46  Score=341.92  Aligned_cols=290  Identities=20%  Similarity=0.269  Sum_probs=235.0

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccc---ccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY---QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      .|...|.+++|+|||++|++++ |+++++||............   ........|+..|.+++|+|++ .|++|+.||.|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence            5677899999999999999887 77888887431111000000   0111122356789999999985 68899999999


Q ss_pred             EEEEcCCCeEeEEe---ecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC-CEE
Q psy8448         175 KIWKIATGQCLRKL---EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG-HSV  250 (482)
Q Consensus       175 ~iwd~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l  250 (482)
                      ++||+.+++.+...   ..+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++ .+|
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  185 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF  185 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence            99999988755433   24799999999999999999999999999999999999999999999999999999987 478


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448         251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~  329 (482)
                      ++++.|+.|++||++++++...+... .+...+.+++|+|++..++++|+.|+.|++||+ .++.+..+..+   ...|+
T Consensus       186 ~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h---~~~v~  261 (344)
T 4gqb_B          186 LSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH---SQCVT  261 (344)
T ss_dssp             EEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC---SSCEE
T ss_pred             eeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC---CCCEE
Confidence            99999999999999999887776421 455678999999988789999999999999999 57777777765   78899


Q ss_pred             EEEEcCCC-CEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCC
Q psy8448         330 CCTTSPRG-EWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKL  408 (482)
Q Consensus       330 ~~~~~~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  408 (482)
                      +++|+|++ ++|++|+.|+.|+                  +||..++                               ++
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~------------------vwd~~~~-------------------------------~~  292 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLA------------------VLDSSLS-------------------------------EL  292 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEE------------------EECTTCC-------------------------------EE
T ss_pred             EEEEccCCCeEEEEEeCCCeEE------------------EEECCCC-------------------------------cE
Confidence            99999998 5799999999999                  5555555                               11


Q ss_pred             CchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcc-eEEEEecCceeecC
Q psy8448         409 PEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQN-LLGTYSEDGLLRFS  482 (482)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~i~iW  482 (482)
                                                   .           .+.+|.+.|++++|+|+++ +|+|||.||+|++|
T Consensus       293 -----------------------------~-----------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w  327 (344)
T 4gqb_B          293 -----------------------------F-----------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH  327 (344)
T ss_dssp             -----------------------------E-----------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             -----------------------------E-----------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence                                         1           4568999999999999986 57799999999998

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-44  Score=330.61  Aligned_cols=296  Identities=18%  Similarity=0.311  Sum_probs=246.7

Q ss_pred             eeeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448          93 KQIKFGSKSHVECARFSPDG-QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      ...+.+|.+.|++++|+|++ ++|++|+.|++|++|++.......   ......+.+|...|.+++|+|++++|++|+.|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---GVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---EEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---cccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            34556999999999999965 899999999999999986533211   11233456789999999999999999999999


Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCC-----
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD-----  246 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~-----  246 (482)
                      ++|++||+.+++.+..+ .+|...|.+++|+|++.+|++|+.|+.|++||++ ++++..+.+|...|.++.|.|.     
T Consensus        87 ~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           87 KTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             SEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred             CEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCC
Confidence            99999999999999888 6899999999999999999999999999999996 5677888899999999999985     


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCccc
Q psy8448         247 -GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKRE  324 (482)
Q Consensus       247 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~  324 (482)
                       +..+++++.|+.|++||+++.+....+.   +|...|.+++|+|++ .++++++.|+.|++||+ .++.+..+..    
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~----  236 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSA----  236 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTTEEEEEEC---CCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEEC----
T ss_pred             CccEEEEEeCCCEEEEEECCcchhheeec---CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEecC----
Confidence             4589999999999999999988877776   899999999999998 89999999999999999 5666666654    


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccc
Q psy8448         325 GGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQ  404 (482)
Q Consensus       325 ~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (482)
                      ...+.+++|+|++.+|++++.++ +++|+++                  .+.....+..                     
T Consensus       237 ~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~------------------~~~~~~~~~~---------------------  276 (319)
T 3frx_A          237 QDEVFSLAFSPNRYWLAAATATG-IKVFSLD------------------PQYLVDDLRP---------------------  276 (319)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTE-EEEEEET------------------TEEEEEEECC---------------------
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeC------------------cCeeeeccCc---------------------
Confidence            45799999999999999887654 8866543                  2211111100                     


Q ss_pred             ccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         405 SLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       405 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                        ..                             ..          ....|...+.+++|+|||++|++|+.||.|+||
T Consensus       277 --~~-----------------------------~~----------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW  313 (319)
T 3frx_A          277 --EF-----------------------------AG----------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW  313 (319)
T ss_dssp             --CC-----------------------------TT----------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             --cc-----------------------------cc----------cccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence              00                             00          233567779999999999999999999999999

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-45  Score=337.90  Aligned_cols=247  Identities=19%  Similarity=0.215  Sum_probs=209.3

Q ss_pred             ecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448          96 KFGSKS-HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        96 ~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      +.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++.......     ...+|...|.+++|+|++++|++|+.|+.+
T Consensus        11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~-----~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-----LSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE-----ECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee-----eccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            348887 99999999999999999999999999998775432211     123578999999999999999999999999


Q ss_pred             EEEEcCCCe--EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc---eEEEeeccccceeEEEEcCCCCE
Q psy8448         175 KIWKIATGQ--CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK---MLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       175 ~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      ++||+..+.  .+..+ .+|...|.+++|+|++++|++++.|+.|++||++++.   ++..+.+|...|.+++|+|++++
T Consensus        86 ~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             EEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             EEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            999988764  45556 6899999999999999999999999999999998764   45677889999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C-C-------------
Q psy8448         250 VLSASSDGTVKMWNLKTTEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q-G-------------  312 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~-~-------------  312 (482)
                      |++++.|+.|++||.++++.  ...+.   +|...|.+++|+|++ .+|++++.|+.|++|+. . +             
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~---~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~  240 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLE---GHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS  240 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEec---CCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence            99999999999999988753  34444   889999999999998 89999999999999996 1 1             


Q ss_pred             -cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         313 -QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       313 -~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                       +.+..+...  |...|.+++|+|++..|++++.|+.|++|+.
T Consensus       241 ~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~  281 (345)
T 3fm0_A          241 WKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQE  281 (345)
T ss_dssp             EEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred             cceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence             122333332  3678999999999999999999999996654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.6e-46  Score=343.41  Aligned_cols=288  Identities=20%  Similarity=0.297  Sum_probs=235.6

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSV------DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ  170 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~  170 (482)
                      ..|...|++++|||||++||+|+.      |+.|++|+..++.....+..    ...+|...|++++|+|++. +++++.
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~----~~~~~~~~V~~~~~s~d~~-~l~~s~  113 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT----AGVQTEAGVTDVAWVSEKG-ILVASD  113 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS----EEEECSSCEEEEEEETTTE-EEEEET
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec----ccCCCCCCEEEEEEcCCCC-EEEEEC
Confidence            379999999999999999999997      78899999887765433322    2334778999999999975 567788


Q ss_pred             CCcEEEEEcCCCeEeEE---eecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448         171 SGKVKIWKIATGQCLRK---LEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      ||+|++||+.+++....   ...+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus       114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTC
T ss_pred             CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence            99999999988765432   124789999999999999999999999999999999999999999999999999999987


Q ss_pred             C-EEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccC
Q psy8448         248 H-SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREG  325 (482)
Q Consensus       248 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~  325 (482)
                      . .+++++.||.|++||++++++...+.. ..+...+.+++|+|++..++++++.|+.|++||+ +++.+..+..+   .
T Consensus       194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~---~  269 (357)
T 4g56_B          194 DTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH---S  269 (357)
T ss_dssp             SSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC---S
T ss_pred             CceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc---c
Confidence            5 789999999999999999887665542 2566789999999998789999999999999999 56777777655   7


Q ss_pred             cCEEEEEEcCCC-CEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccc
Q psy8448         326 GDFLCCTTSPRG-EWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQ  404 (482)
Q Consensus       326 ~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (482)
                      ..|++++|+|++ ++|++|+.|+.|+                  +|+..++                             
T Consensus       270 ~~v~~l~~sp~~~~~lasgs~D~~i~------------------iwd~~~~-----------------------------  302 (357)
T 4g56_B          270 QNITGLAYSYHSSPFLASISEDCTVA------------------VLDADFS-----------------------------  302 (357)
T ss_dssp             SCEEEEEECSSSSCCEEEEETTSCEE------------------EECTTSC-----------------------------
T ss_pred             eeEEEEEEcCCCCCEEEEEeCCCEEE------------------EEECCCC-----------------------------
Confidence            789999999997 5799999999999                  5555555                             


Q ss_pred             ccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccC-CcceEEEEecCceeecC
Q psy8448         405 SLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHP-HQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       405 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~Dg~i~iW  482 (482)
                        ++                             .           ...+|.+.|++++|+| |+++|||||.||+|++|
T Consensus       303 --~~-----------------------------~-----------~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          303 --EV-----------------------------F-----------RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             --EE-----------------------------E-----------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             --cE-----------------------------e-----------EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence              11                             1           2337999999999999 79999999999999998

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.8e-45  Score=344.80  Aligned_cols=293  Identities=20%  Similarity=0.298  Sum_probs=245.7

Q ss_pred             eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      ...+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+.        .|...|.+++|+|++++|++|+.|+
T Consensus        59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--------~h~~~v~~~~~s~~g~~las~~~d~  130 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK--------LHCPWVMECAFAPNGQSVACGGLDS  130 (380)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--------CCCTTCCCCEECTTSSEEEECCSSS
T ss_pred             eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe--------cCCCCEEEEEECCCCCEEEEeeCCC
Confidence            34566999999999999999999999999999999999887665544        3568899999999999999999999


Q ss_pred             cEEEEEcCCCe-------EeEEeecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCceEEEe-----ecccccee
Q psy8448         173 KVKIWKIATGQ-------CLRKLEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGKMLKEF-----RGHSSFVN  239 (482)
Q Consensus       173 ~i~iwd~~~~~-------~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~  239 (482)
                      .+++||+.+..       ....+ .+|...+.++.|.|+ +..|++|+.|+.|++||+++++.+..+     .+|...|.
T Consensus       131 ~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          131 ACSIFNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             CCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             cEEEEECCCCccccCCccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence            99999986532       12233 689999999999996 457999999999999999999988877     57899999


Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEE
Q psy8448         240 DITFTA-DGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVR  316 (482)
Q Consensus       240 ~l~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~  316 (482)
                      +++|++ ++++|++|+.|+.|++||++. .+.+..+.   +|...|.+++|+|++ .+|++++.|++|++||+ .++.+.
T Consensus       210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~---~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~  285 (380)
T 3iz6_a          210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH---GHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQ  285 (380)
T ss_dssp             EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC---CCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEE
T ss_pred             EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC---CcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEE
Confidence            999987 889999999999999999984 45666665   899999999999998 89999999999999999 567776


Q ss_pred             EecCCcc----cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccC
Q psy8448         317 SLSSGKR----EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADIN  392 (482)
Q Consensus       317 ~~~~~~~----~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (482)
                      .+..+..    +...+.+++|+|+|++|++|+.||.|++                  |+..+++....+           
T Consensus       286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v------------------wd~~~~~~~~~~-----------  336 (380)
T 3iz6_a          286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV------------------WDTLLAEMVLNL-----------  336 (380)
T ss_dssp             EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE------------------EETTTCCEEEEE-----------
T ss_pred             EecccccccccccCceEEEEECCCCCEEEEEECCCCEEE------------------EECCCCceEEEE-----------
Confidence            6654321    1234889999999999999999999995                  454444111110           


Q ss_pred             CCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEE
Q psy8448         393 NGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGT  472 (482)
Q Consensus       393 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  472 (482)
                                                                   ..          ...+|.+.|++++|+|||++|+|
T Consensus       337 ---------------------------------------------~~----------~~~~h~~~v~~l~~s~dg~~l~s  361 (380)
T 3iz6_a          337 ---------------------------------------------GT----------LQNSHEGRISCLGLSSDGSALCT  361 (380)
T ss_dssp             ---------------------------------------------CC----------SCSSCCCCCCEEEECSSSSEEEE
T ss_pred             ---------------------------------------------ec----------ccCCCCCceEEEEECCCCCEEEE
Confidence                                                         00          23579999999999999999999


Q ss_pred             EecCceeecC
Q psy8448         473 YSEDGLLRFS  482 (482)
Q Consensus       473 ~~~Dg~i~iW  482 (482)
                      |+.||+|+||
T Consensus       362 gs~D~~i~iW  371 (380)
T 3iz6_a          362 GSWDKNLKIW  371 (380)
T ss_dssp             ECTTSCEEEE
T ss_pred             eeCCCCEEEE
Confidence            9999999999

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-44  Score=359.33  Aligned_cols=388  Identities=17%  Similarity=0.218  Sum_probs=283.3

Q ss_pred             cccceeeChhHHHHHHHh---Hhhhhhc-------------------cCCCCCCceeeccC------Ccccccccccccc
Q psy8448          36 VGEVSVVPPSRLLALLGQ---ALKWQQH-------------------QGLLPPGTTIDLFR------GKAAMKDQEEEKY   87 (482)
Q Consensus        36 ~~~~~~~p~~~l~~~~~~---~~~~~~~-------------------~~~~~~g~~~~~~~------~~~~~~~~~~~~~   87 (482)
                      +..++++|++++++..+.   ..-|+..                   ..+.|+|..++...      +.+.+|+...   
T Consensus        62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~---  138 (611)
T 1nr0_A           62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---  138 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---
T ss_pred             eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---
Confidence            346778888887765432   1124321                   12235565554432      2455665321   


Q ss_pred             ccccceeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE
Q psy8448          88 PTQLSKQIKFGSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA  166 (482)
Q Consensus        88 ~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  166 (482)
                         . ...+.+|...|++++|+|+++ .|++|+.|++|++||..+++....        +.+|...|.+++|+|++++|+
T Consensus       139 ---~-~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~--------l~~H~~~V~~v~fspdg~~la  206 (611)
T 1nr0_A          139 ---S-NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST--------FGEHTKFVHSVRYNPDGSLFA  206 (611)
T ss_dssp             ---B-CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--------ECCCSSCEEEEEECTTSSEEE
T ss_pred             ---C-cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee--------eccccCceEEEEECCCCCEEE
Confidence               1 123459999999999999987 599999999999999887665443        345789999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCeEeEEeec------ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE----------
Q psy8448         167 SGSQSGKVKIWKIATGQCLRKLEK------AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE----------  230 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------  230 (482)
                      +++.|++|++||+.+++....+..      +|...|.+++|+|++++|++++.|+.|++||+++++.+..          
T Consensus       207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~  286 (611)
T 1nr0_A          207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  286 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence            999999999999999988887733      6999999999999999999999999999999988765433          


Q ss_pred             ---------------------------------eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeec--
Q psy8448         231 ---------------------------------FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS--  275 (482)
Q Consensus       231 ---------------------------------~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  275 (482)
                                                       +.+|...|.+++|+|++++|++++.|+.|++||+.+++....+..  
T Consensus       287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h  366 (611)
T 1nr0_A          287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH  366 (611)
T ss_dssp             EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred             eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC
Confidence                                             347889999999999999999999999999999987654332200  


Q ss_pred             -------------------------------------------c-----------C-----------------------C
Q psy8448         276 -------------------------------------------L-----------G-----------------------A  278 (482)
Q Consensus       276 -------------------------------------------~-----------~-----------------------~  278 (482)
                                                                 .           .                       .
T Consensus       367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~  446 (611)
T 1nr0_A          367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP  446 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred             cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee
Confidence                                                       0           0                       0


Q ss_pred             CccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhh
Q psy8448         279 SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYL  358 (482)
Q Consensus       279 ~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~  358 (482)
                      +...+.+++|+|++ .++++++.|+.|++||+.+..+..... ..|...|.+++|+|+|++|++++.|+.|++|++....
T Consensus       447 ~~~~v~~va~spdg-~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~  524 (611)
T 1nr0_A          447 ISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF  524 (611)
T ss_dssp             CSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred             cCCCceEEEEeCCC-CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence            12346789999998 899999999999999996544322222 3347889999999999999999999999988875311


Q ss_pred             hhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhcc
Q psy8448         359 KESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLR  438 (482)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (482)
                      ...    ....+...++.......++++.  .+++++.|+.++.|+....                         ... .
T Consensus       525 ~~~----~~~~~~~H~~~V~~v~fspdg~--~lasgs~D~~v~lW~~~~~-------------------------~~~-~  572 (611)
T 1nr0_A          525 ELA----HTNSWTFHTAKVACVSWSPDNV--RLATGSLDNSVIVWNMNKP-------------------------SDH-P  572 (611)
T ss_dssp             EES----CCCCCCCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCT-------------------------TSC-C
T ss_pred             cee----eeeeeeecccceeEEEECCCCC--EEEEEECCCcEEEEECCCc-------------------------ccc-c
Confidence            000    0001111222222223445543  4667777888877743111                         000 1


Q ss_pred             ccCcccccccCcceec-ccceeeccccCCcceEEEEecCceeecC
Q psy8448         439 QTDPMIFMKQHEPEVH-EKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       439 ~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                               ...+.+| ...|++++|+|+++ |+|++.||+|++|
T Consensus       573 ---------~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW  607 (611)
T 1nr0_A          573 ---------IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFW  607 (611)
T ss_dssp             ---------EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             ---------chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEE
Confidence                     0155689 89999999999998 9999999999999

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-43  Score=331.24  Aligned_cols=290  Identities=21%  Similarity=0.309  Sum_probs=243.7

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccc----------ccccccccEEEEEEcCCCCEEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD----------NFMLMEEAVMSLAYSRDSEMLAS  167 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~~~h~~~i~~l~~~~~~~~l~~  167 (482)
                      +|.+.|++++|+|+|++||+|+ ++.+++|++.+++....+..+...          ....+...|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            7999999999999999999987 789999999999877655433210          00112345999999999999999


Q ss_pred             EeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC-C
Q psy8448         168 GSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-D  246 (482)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~-~  246 (482)
                      |+.|+.|++||+.+++....+ .+|...|.+++|+|++.+|++++.|+.|++||+++++....+. +...+.+++|+| +
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  218 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD  218 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred             EcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence            999999999999999988888 7899999999999999999999999999999999999887776 567799999999 8


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeec----cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECTSTFKS----LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG----------  312 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~----------  312 (482)
                      +++|++++.|+.|++||+++++.+..+..    ..+|...|.+++|+|++ .++++++.|+.|++||+..          
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC------------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence            99999999999999999999887766631    13688899999999998 8999999999999999842          


Q ss_pred             ---cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccccccccee
Q psy8448         313 ---QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIA  389 (482)
Q Consensus       313 ---~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (482)
                         .....+..   |...|.+++|+|++.+|++|+.|+.|+                  +|+..++              
T Consensus       298 ~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~sgs~D~~v~------------------iwd~~~~--------------  342 (393)
T 1erj_A          298 NSGTCEVTYIG---HKDFVLSVATTQNDEYILSGSKDRGVL------------------FWDKKSG--------------  342 (393)
T ss_dssp             ---CEEEEEEC---CSSCEEEEEECGGGCEEEEEETTSEEE------------------EEETTTC--------------
T ss_pred             CCCcceEEEec---ccCcEEEEEECCCCCEEEEEeCCCeEE------------------EEECCCC--------------
Confidence               12233333   367899999999999999999999999                  5666555              


Q ss_pred             ccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccC----
Q psy8448         390 DINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHP----  465 (482)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp----  465 (482)
                                       +.                             ..          .+.+|.+.|.+++|+|    
T Consensus       343 -----------------~~-----------------------------~~----------~l~~h~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          343 -----------------NP-----------------------------LL----------MLQGHRNSVISVAVANGSSL  366 (393)
T ss_dssp             -----------------CE-----------------------------EE----------EEECCSSCEEEEEECSSCTT
T ss_pred             -----------------eE-----------------------------EE----------EECCCCCCEEEEEecCCcCc
Confidence                             22                             22          6678999999998875    


Q ss_pred             --CcceEEEEecCceeecC
Q psy8448         466 --HQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       466 --~~~~l~s~~~Dg~i~iW  482 (482)
                        ++++||||+.||+|+||
T Consensus       367 ~p~~~~l~sgs~Dg~i~iW  385 (393)
T 1erj_A          367 GPEYNVFATGSGDCKARIW  385 (393)
T ss_dssp             CTTCEEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEECCCCcEEEC
Confidence              78899999999999999

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.7e-43  Score=323.26  Aligned_cols=300  Identities=20%  Similarity=0.269  Sum_probs=239.1

Q ss_pred             eeeecCCCCcEEEEEE-----cC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE
Q psy8448          93 KQIKFGSKSHVECARF-----SP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA  166 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  166 (482)
                      ...+.+|++.|++++|     ++ ++++|++|+.|++|++||+.+.+..... ......+.+|...|.+++|+|++.+++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-GIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-EEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-ccccchhccCCCceEEEEECCCCCEEE
Confidence            3456699999999999     77 9999999999999999999865422111 122345667899999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee---ccccceeEEEE
Q psy8448         167 SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR---GHSSFVNDITF  243 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~l~~  243 (482)
                      +++.|++|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+... ......   .|...|.+++|
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence            9999999999999999998888 689999999999999999999999999999999743 333333   68889999999


Q ss_pred             cCCC----------CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CC
Q psy8448         244 TADG----------HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QG  312 (482)
Q Consensus       244 ~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~  312 (482)
                      +|++          .+|++++.|+.|++||. ..+....+.   .|...|.+++|+|++ .+|++++.|+.|++||+ ..
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~---~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~  245 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK---AHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNL  245 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE---CCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCC
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc---CccccceEEEECCCC-CEEEEEcCCCeEEEEECCCC
Confidence            9987          78999999999999994 455555665   888999999999999 89999999999999999 33


Q ss_pred             -cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceee--ccccccccee
Q psy8448         313 -QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN--TVDSVDGFIA  389 (482)
Q Consensus       313 -~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  389 (482)
                       .....+..    ...|.+++|+|++.+++++ .|+.+++|++                  .++....  .+...     
T Consensus       246 ~~~~~~~~~----~~~v~~v~~sp~~~~la~~-~d~~v~iw~~------------------~~~~~~~~~~~~~~-----  297 (343)
T 2xzm_R          246 TYPQREFDA----GSTINQIAFNPKLQWVAVG-TDQGVKIFNL------------------MTQSKAPVCTIEAE-----  297 (343)
T ss_dssp             SSCSEEEEC----SSCEEEEEECSSSCEEEEE-ESSCEEEEES------------------SSCCSCSEEECCCC-----
T ss_pred             cccceeecC----CCcEEEEEECCCCCEEEEE-CCCCEEEEEe------------------CCCCCCceEEeecC-----
Confidence             23333322    4569999999999888755 5778996554                  3331110  00000     


Q ss_pred             ccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcce
Q psy8448         390 DINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNL  469 (482)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  469 (482)
                                       .+                           ....          ...+|...|++++|+|+|++
T Consensus       298 -----------------~~---------------------------~~~~----------~~~~~~~~v~~~~~sp~g~~  323 (343)
T 2xzm_R          298 -----------------PI---------------------------TKAE----------GQKGKNPQCTSLAWNALGKK  323 (343)
T ss_dssp             -----------------SG---------------------------GGBT----------TBCCSCCCEEEEEECSSSCC
T ss_pred             -----------------cc---------------------------hhhh----------hhcCCCCceEEEEECCCCCe
Confidence                             00                           0011          34578889999999999999


Q ss_pred             EEEEecCceeecC
Q psy8448         470 LGTYSEDGLLRFS  482 (482)
Q Consensus       470 l~s~~~Dg~i~iW  482 (482)
                      |++|+.||+|++|
T Consensus       324 l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          324 LFAGFTDGVIRTF  336 (343)
T ss_dssp             EEEEETTSEEEEE
T ss_pred             EEEecCCceEEEE
Confidence            9999999999998

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-43  Score=319.88  Aligned_cols=244  Identities=23%  Similarity=0.233  Sum_probs=198.4

Q ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCce--eeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKI--RKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      .+.+|.+.|.+++|+|+  +||+|+.|++|++||+.++..  ...+.      ..+|...|.+++|+|++++|++++.|+
T Consensus         9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~------~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD------ETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC------TTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe------cCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            34599999999999988  999999999999999987532  11110      123788999999999999999999999


Q ss_pred             cEEEEEcCC-------CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC----CceEEEeeccccceeEE
Q psy8448         173 KVKIWKIAT-------GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS----GKMLKEFRGHSSFVNDI  241 (482)
Q Consensus       173 ~i~iwd~~~-------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~l  241 (482)
                      .|++||+..       .+.+..+ .+|...|.+++|+|++++|++|+.|+.|++||++.    .+++..+.+|...|.++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence            999999853       2345555 68999999999999999999999999999999953    24677888999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCC--ceeeeeeccCCCccceeEEEEcCCC-CCEEEEEeCCCeEEEEEcCC------
Q psy8448         242 TFTADGHSVLSASSDGTVKMWNLKTT--ECTSTFKSLGASDIAVNSIHLLPKN-TEHFVVCNKTNTVVIMNMQG------  312 (482)
Q Consensus       242 ~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~~~~~d~~i~i~d~~~------  312 (482)
                      +|+|++++|++++.|+.|++||..++  +++..+.   +|...|.+++|+|++ ...+++++.|+.|++||+..      
T Consensus       160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~  236 (330)
T 2hes_X          160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN---GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ  236 (330)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc---CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence            99999999999999999999998876  4555555   899999999999983 26899999999999999842      


Q ss_pred             ---cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         313 ---QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       313 ---~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                         .....+..  .|...|.+++|++++ +|++++.||.|++|+
T Consensus       237 ~~~~~~~~~~~--~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~  277 (330)
T 2hes_X          237 QEWVCEAILPD--VHKRQVYNVAWGFNG-LIASVGADGVLAVYE  277 (330)
T ss_dssp             EEEEEEEECCS--CCSSCEEEEEECTTS-CEEEEETTSCEEEEE
T ss_pred             ceeEEeeeccc--ccccceEEEEEcCCC-EEEEEeCCCEEEEEE
Confidence               22333332  147889999999765 899999999999554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.6e-42  Score=339.45  Aligned_cols=346  Identities=26%  Similarity=0.367  Sum_probs=274.3

Q ss_pred             CCCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccc
Q psy8448          63 LLPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY  140 (482)
Q Consensus        63 ~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  140 (482)
                      +.|+|..+..  .++.+.+|+...     +.. ..+.+|...|++++|+|+++.|++++.|+.|++||.. ++....   
T Consensus       229 ~s~dg~~l~~~~~d~~i~~w~~~~-----~~~-~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~---  298 (577)
T 2ymu_A          229 FSPDGQTIASASDDKTVKLWNRNG-----QLL-QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQT---  298 (577)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTS-----CEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE---
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCC-----CEE-EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEE---
Confidence            3456655443  355677777432     222 3345899999999999999999999999999999964 333332   


Q ss_pred             ccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448         141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH  220 (482)
Q Consensus       141 ~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~  220 (482)
                           +.+|...|.+++|+|++++|++++.|+.|++||+... .+..+ ..|...+.+++|+|++++|++++.|+.|++|
T Consensus       299 -----~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~  371 (577)
T 2ymu_A          299 -----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLW  371 (577)
T ss_dssp             -----ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             -----EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence                 3456889999999999999999999999999997654 45555 6789999999999999999999999999999


Q ss_pred             eCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448         221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       221 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      |. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++....+.   .|...|.+++|+|++ .++++++
T Consensus       372 ~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~---~~~~~v~~~~~s~d~-~~l~~~~  445 (577)
T 2ymu_A          372 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVWGVAFSPDD-QTIASAS  445 (577)
T ss_dssp             ET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE---CCSSCEEEEEECTTS-SEEEEEE
T ss_pred             cC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec---CCCCCeEEEEECCCC-CEEEEEc
Confidence            95 67888899999999999999999999999999999999995 566666666   889999999999998 8999999


Q ss_pred             CCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeec
Q psy8448         301 KTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNT  380 (482)
Q Consensus       301 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                      .|+.|++||.+++.+..+..+   ...|.+++|+|++++|++++.|+.|++|+...        ..++.+....+.....
T Consensus       446 ~d~~v~~w~~~~~~~~~~~~~---~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--------~~~~~~~~h~~~v~~l  514 (577)
T 2ymu_A          446 DDKTVKLWNRNGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVRGV  514 (577)
T ss_dssp             TTSEEEEEETTSCEEEEEECC---SSCEEEEEECTTSCEEEEEETTSEEEEEETTS--------CEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEECCCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--------CEEEEEeCCCCCEEEE
Confidence            999999999998888888765   77899999999999999999999999776321        1111222222221122


Q ss_pred             ccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceee
Q psy8448         381 VDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIG  460 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  460 (482)
                      ..++++.  .+++++.|+.++.|+.                                      ++.++..+.+|.+.|++
T Consensus       515 ~~s~dg~--~l~s~~~dg~v~lwd~--------------------------------------~~~~~~~~~~h~~~v~~  554 (577)
T 2ymu_A          515 AFSPDGQ--TIASASDDKTVKLWNR--------------------------------------NGQLLQTLTGHSSSVWG  554 (577)
T ss_dssp             EECTTSS--CEEEEETTSEEEEECT--------------------------------------TSCEEEEEECCSSCEEE
T ss_pred             EEcCCCC--EEEEEECcCEEEEEeC--------------------------------------CCCEEEEEcCCCCCEEE
Confidence            2333332  2444555555555421                                      23334488899999999


Q ss_pred             ccccCCcceEEEEecCceeecC
Q psy8448         461 LTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       461 ~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      ++|+|||++|+|++.||+|++|
T Consensus       555 ~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          555 VAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             EEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEcCCCCEEEEEeCCCEEEEe
Confidence            9999999999999999999999

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.4e-41  Score=313.44  Aligned_cols=284  Identities=17%  Similarity=0.250  Sum_probs=245.7

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .+|...|++++|+|++++|++++ ||.|++||+.+++....+...   ....|...|.+++|+|++++|++++.||.|++
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL---DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE---ECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc---cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            38999999999999999999999 999999999887644332211   11246789999999999999999999999999


Q ss_pred             EEcCCCe--EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         177 WKIATGQ--CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       177 wd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      ||+.+++  ....+ ..|...+.+++|+|+++++++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++
T Consensus       124 ~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  202 (337)
T 1gxr_A          124 WDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             EECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCCcceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe
Confidence            9998877  44445 57888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEc
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      .||.|++||+++++....+    .+...+.+++|+|++ .++++++.++.|++||+.......+..+   ...+.+++|+
T Consensus       203 ~dg~i~~~d~~~~~~~~~~----~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~~~~~~~---~~~v~~~~~~  274 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLHLH---ESCVLSLKFA  274 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEE----ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEEEECCC---SSCEEEEEEC
T ss_pred             cCCcEEEEECCCCceEeee----cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCeEEEcCC---ccceeEEEEC
Confidence            9999999999999887776    456789999999998 8999999999999999965555555544   7789999999


Q ss_pred             CCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhh
Q psy8448         335 PRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLI  414 (482)
Q Consensus       335 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  414 (482)
                      |++++|++++.||.++                  +|+..++                               +.      
T Consensus       275 ~~~~~l~~~~~dg~i~------------------~~~~~~~-------------------------------~~------  299 (337)
T 1gxr_A          275 YCGKWFVSTGKDNLLN------------------AWRTPYG-------------------------------AS------  299 (337)
T ss_dssp             TTSSEEEEEETTSEEE------------------EEETTTC-------------------------------CE------
T ss_pred             CCCCEEEEecCCCcEE------------------EEECCCC-------------------------------eE------
Confidence            9999999999999999                  5555555                               11      


Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         415 DLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                             .           ....|...|.+++|+|++++|++++.||.|++|
T Consensus       300 -----------------------~-----------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          300 -----------------------I-----------FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             -----------------------E-----------EEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             -----------------------E-----------EEecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence                                   1           223577889999999999999999999999998

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=310.60  Aligned_cols=264  Identities=21%  Similarity=0.345  Sum_probs=236.5

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++.+.+|+......   .....+.+|...|.+++|+|++.++++++.|++|++||+.+++.+..+..        |...
T Consensus        56 ~D~~v~vW~~~~~~~---~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~--------~~~~  124 (321)
T 3ow8_A           56 LDDLVKVWKWRDERL---DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--------GPVD  124 (321)
T ss_dssp             TTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC--------CTTC
T ss_pred             CCCCEEEEECCCCCe---eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC--------CCcc
Confidence            467788888754332   12233569999999999999999999999999999999999887665543        3567


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  232 (482)
                      +.+++|+|++++|++++.||.|++||+++++....+ ..+...+.+++|+|++++|++|+.|+.|++||+++++.+..+.
T Consensus       125 ~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~  203 (321)
T 3ow8_A          125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE  203 (321)
T ss_dssp             CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence            889999999999999999999999999999888887 5788899999999999999999999999999999999999999


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C
Q psy8448         233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q  311 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~  311 (482)
                      +|..+|.+++|+|++++|++++.|+.|++||+++++....+.   +|...|.+++|+|++ .+|++++.|+.|++||+ +
T Consensus       204 ~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT
T ss_pred             ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc---CCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCC
Confidence            999999999999999999999999999999999998888776   889999999999998 89999999999999999 5


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ++.+..+..+   ...|.+++|+|++++|++++.||.|++|+.+
T Consensus       280 ~~~~~~~~~h---~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          280 RTCVHTFFDH---QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TEEEEEECCC---SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CEEEEEEcCC---CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            7777777765   7789999999999999999999999988753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8e-41  Score=308.86  Aligned_cols=297  Identities=19%  Similarity=0.308  Sum_probs=243.4

Q ss_pred             eeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          94 QIKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      ..+.||++.|++|+|+|+ +++||||+.||+|+|||+.+.+....   .....+.+|...|.+++|+|++++|++++.|+
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---IPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---EEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---eeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            446699999999999997 68999999999999999987654322   12334567899999999999999999999999


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE-EEeeccccceeEEEEcCCC--CE
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML-KEFRGHSSFVNDITFTADG--HS  249 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~l~~~~~~--~~  249 (482)
                      .|++|+.......... ..+...+..+.+++++.+|++++.|+.+++||+...... ....+|...+.+++|++++  .+
T Consensus       109 ~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             EEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             cceEEeecccceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            9999999988877777 577888999999999999999999999999999766543 3456789999999998864  57


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCE
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDF  328 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v  328 (482)
                      +++++.|+.|++||+++++....+.   +|..+|.+++|+|++ .+|++++.|+.|++||+ ..+.+..+..    ...+
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~----~~~v  259 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHI---GHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLDG----GDII  259 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEEC----SSCE
T ss_pred             EEEEcCCCEEEEEECCCCceeeEec---CCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeecC----CceE
Confidence            8899999999999999999888877   889999999999998 89999999999999999 5666666654    4579


Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCC
Q psy8448         329 LCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKL  408 (482)
Q Consensus       329 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  408 (482)
                      .+++|+|++.++ +++.|+.|++|++                  .++.....+...                      ..
T Consensus       260 ~~~~~~~~~~~~-~~~~d~~i~iwd~------------------~~~~~~~~~~~~----------------------~~  298 (340)
T 4aow_A          260 NALCFSPNRYWL-CAATGPSIKIWDL------------------EGKIIVDELKQE----------------------VI  298 (340)
T ss_dssp             EEEEECSSSSEE-EEEETTEEEEEET------------------TTTEEEEEECCC------------------------
T ss_pred             EeeecCCCCcee-eccCCCEEEEEEC------------------CCCeEEEecccc----------------------ce
Confidence            999999988655 5667999996554                  333222111110                      00


Q ss_pred             CchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         409 PEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                   ..          ...+|...|++++|+|||++||||+.||+|+||
T Consensus       299 -----------------------------~~----------~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW  333 (340)
T 4aow_A          299 -----------------------------ST----------SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW  333 (340)
T ss_dssp             --------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -----------------------------ee----------eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence                                         11          456799999999999999999999999999999

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.6e-41  Score=319.63  Aligned_cols=269  Identities=20%  Similarity=0.321  Sum_probs=238.9

Q ss_pred             CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      |++..+..  .++.+.+|+.......     ..+.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.   
T Consensus       118 p~~~~l~s~s~Dg~i~vwd~~~~~~~-----~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~---  189 (410)
T 1vyh_C          118 PVFSVMVSASEDATIKVWDYETGDFE-----RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---  189 (410)
T ss_dssp             SSSSEEEEEESSSCEEEEETTTCCCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC---
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEE-----EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc---
Confidence            45554444  3567888887654332     3345899999999999999999999999999999999877665543   


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeC
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL  222 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~  222 (482)
                           +|...|.+++|+|++++|++|+.|+.|++||++++..+..+ .+|...|.+++|+|++.+|++|+.|+.|++||+
T Consensus       190 -----~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~  263 (410)
T 1vyh_C          190 -----GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  263 (410)
T ss_dssp             -----CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             -----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence                 46789999999999999999999999999999999999888 689999999999999999999999999999999


Q ss_pred             CCCceEEEeeccccceeEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccc
Q psy8448         223 KSGKMLKEFRGHSSFVNDITFTAD--------------------GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIA  282 (482)
Q Consensus       223 ~~~~~~~~~~~~~~~i~~l~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  282 (482)
                      +++++...+.+|...|.+++|+|+                    +.+|++|+.|+.|++||+++++++..+.   +|...
T Consensus       264 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~---~h~~~  340 (410)
T 1vyh_C          264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNW  340 (410)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSC
T ss_pred             CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE---CCCCc
Confidence            999999999999999999999996                    6789999999999999999999888887   88999


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         283 VNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       283 v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      |.+++|+|++ .++++++.|+.|++||+ .++.+..+..+   ...|++++|+|++.+|++|+.||.|++|+.
T Consensus       341 v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          341 VRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAH---EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECC---SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEcCC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            9999999998 89999999999999999 56777777655   778999999999999999999999998864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.8e-41  Score=309.62  Aligned_cols=247  Identities=16%  Similarity=0.236  Sum_probs=212.7

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      ..|...|++++|+|++ .|++|+.||+|+|||+.+++.......    ...+|.+.|++++|+|++++|++|+.|++|++
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~----~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i  153 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKF----CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV  153 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEE----EEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeec----cccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            3577889999999985 688999999999999999876544332    23458899999999999999999999999999


Q ss_pred             EEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCCceEEEee--ccccceeEEEEcCC-CCEEEE
Q psy8448         177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKMLKEFR--GHSSFVNDITFTAD-GHSVLS  252 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~l~~~~~-~~~l~~  252 (482)
                      ||+.+++.+..+ .+|...|.+++|+|++. +|++++.|+.|++||+++++....+.  .+...+.+++|+|+ +++|++
T Consensus       154 wd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s  232 (344)
T 4gqb_B          154 WDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF  232 (344)
T ss_dssp             EETTTTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred             EECCCCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEE
Confidence            999999999998 78999999999999874 78899999999999999999888764  45667999999994 578899


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEE
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCT  332 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  332 (482)
                      |+.||.|++||+++++++..+.   +|...|.+++|+|++..+|++++.|++|++||++...+..+..|   ...|++++
T Consensus       233 g~~dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H---~~~V~~v~  306 (344)
T 4gqb_B          233 GDENGTVSLVDTKSTSCVLSSA---VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAH---RDFVRDAT  306 (344)
T ss_dssp             EETTSEEEEEESCC--CCEEEE---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCC---SSCEEEEE
T ss_pred             eccCCcEEEEECCCCcEEEEEc---CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCC---CCCEEEEE
Confidence            9999999999999999988887   89999999999999877899999999999999965555555544   78999999


Q ss_pred             EcCCCC-EEEEEeCCcEEEEEeeh
Q psy8448         333 TSPRGE-WIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       333 ~~~~g~-~l~~~~~dg~i~iw~~~  355 (482)
                      |+|+++ +|++++.||.|++|+++
T Consensus       307 ~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          307 WSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EeCCCCeEEEEEcCCCeEEEEECC
Confidence            999986 56789999999977654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-41  Score=311.98  Aligned_cols=297  Identities=14%  Similarity=0.239  Sum_probs=248.5

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++....+.        +|...|.+++|+|++++|++++.||.
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~dg~   97 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--------GHTGTIWSIDVDCFTKYCVTGSADYS   97 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh--------hcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            4456999999999999999999999999999999999887766554        35789999999999999999999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCc-----------eEEEeecccc-
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGK-----------MLKEFRGHSS-  236 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-----------~~~~~~~~~~-  236 (482)
                      |++||+.+++.+..+.  +...+.+++|+|++.++++++.+     +.|++||++...           ....+..|.. 
T Consensus        98 i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B           98 IKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             EEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            9999999999988884  88899999999999999999999     999999997654           3344455665 


Q ss_pred             -ceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCc
Q psy8448         237 -FVNDITFTADGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQ  313 (482)
Q Consensus       237 -~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~  313 (482)
                       .+.+++|+|++++|++++.||.|++||+++ .+....+.   .|...|.+++|+|++ .++++++.|+.|++||+ .++
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID---LHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ  251 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE---CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC
T ss_pred             cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe---cCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc
Confidence             899999999999999999999999999998 67777776   788899999999998 89999999999999999 567


Q ss_pred             EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCC
Q psy8448         314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINN  393 (482)
Q Consensus       314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (482)
                      .+..+..    ...+.+++|+|+++++++++.++...+|.....    .....+.+|+..++                  
T Consensus       252 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~i~~~d~~~~------------------  305 (369)
T 3zwl_B          252 VLKKYET----DCPLNTAVITPLKEFIILGGGQEAKDVTTTSAN----EGKFEARFYHKIFE------------------  305 (369)
T ss_dssp             EEEEEEC----SSCEEEEEECSSSSEEEEEECCC-----------------CEEEEEETTTC------------------
T ss_pred             eeeeecC----CCCceeEEecCCCceEEEeecCCCceEEEEecC----CCcceeEEEecCCC------------------
Confidence            7776662    678999999999999999999997766544311    11123346666655                  


Q ss_pred             CcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEE
Q psy8448         394 GHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTY  473 (482)
Q Consensus       394 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~  473 (482)
                                   +.                             ..          .+.+|...|++++|+|++++|+++
T Consensus       306 -------------~~-----------------------------~~----------~~~~~~~~v~~~~~s~~~~~l~s~  333 (369)
T 3zwl_B          306 -------------EE-----------------------------IG----------RVQGHFGPLNTVAISPQGTSYASG  333 (369)
T ss_dssp             -------------CE-----------------------------EE----------EEECCSSCEEEEEECTTSSEEEEE
T ss_pred             -------------cc-----------------------------hh----------heecccCcEEEEEECCCCCEEEEE
Confidence                         22                             22          677899999999999999999999


Q ss_pred             ecCceeecC
Q psy8448         474 SEDGLLRFS  482 (482)
Q Consensus       474 ~~Dg~i~iW  482 (482)
                      +.||.|+||
T Consensus       334 ~~dg~v~iw  342 (369)
T 3zwl_B          334 GEDGFIRLH  342 (369)
T ss_dssp             ETTSEEEEE
T ss_pred             cCCCeEEEE
Confidence            999999998

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.3e-40  Score=326.44  Aligned_cols=345  Identities=27%  Similarity=0.364  Sum_probs=271.1

Q ss_pred             CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448          64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ  141 (482)
Q Consensus        64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  141 (482)
                      .|+|..+..  .++.+.+|+...     +.. ....+|...|.+++|+|++++|++++.|+.|++||.. ++.+..    
T Consensus       189 ~~~~~~l~~~~~d~~v~~w~~~~-----~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~----  257 (577)
T 2ymu_A          189 SPDGQTIASASDDKTVKLWNRNG-----QLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT----  257 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECTTS-----CEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEE----
T ss_pred             cCCCCEEEEEcCCCEEEEEeCCC-----cEE-EEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEE----
Confidence            355554443  345667776432     222 2345899999999999999999999999999999964 443332    


Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG  221 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d  221 (482)
                          +.+|...|++++|+|+++.|++++.|+.|++||. +++....+ .+|...|.+++|+|+++.|++++.|+.|++||
T Consensus       258 ----~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~  331 (577)
T 2ymu_A          258 ----LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  331 (577)
T ss_dssp             ----ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ----EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence                3346789999999999999999999999999996 45666666 68999999999999999999999999999999


Q ss_pred             CCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      +. ++.+..+.+|...+.+++|+|++++|++++.|+.|++||. +++.+..+.   .|...|.+++|+|++ .++++++.
T Consensus       332 ~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~---~~~~~v~~~~~s~dg-~~l~~~~~  405 (577)
T 2ymu_A          332 RN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDG-QTIASASD  405 (577)
T ss_dssp             TT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE---CCSSCEEEEEECTTS-SCEEEEET
T ss_pred             CC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec---CCCCCeEEEEECCCC-CEEEEEeC
Confidence            75 5566778889999999999999999999999999999995 566667666   788999999999999 88999999


Q ss_pred             CCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecc
Q psy8448         302 TNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTV  381 (482)
Q Consensus       302 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      |+.|++||.+++.+..+..+   ...|.+++|+|++++|++++.|+.|++|+....        .+..+...........
T Consensus       406 d~~v~~~~~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~--------~~~~~~~~~~~v~~~~  474 (577)
T 2ymu_A          406 DKTVKLWNRNGQLLQTLTGH---SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVA  474 (577)
T ss_dssp             TSEEEEECTTCCEEEEEECC---SSCEEEEEECTTSSEEEEEETTSEEEEEETTSC--------EEEEEECCSSCEEEEE
T ss_pred             CCEEEEEeCCCCEEEEecCC---CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC--------EEEEEcCCCCCEEEEE
Confidence            99999999988888888765   778999999999999999999999998874311        1111111111111111


Q ss_pred             cccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeec
Q psy8448         382 DSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGL  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  461 (482)
                      .++++.  .++.++.|..++.|+.                                      ++.++..+.+|...|+++
T Consensus       475 ~spd~~--~las~~~d~~i~iw~~--------------------------------------~~~~~~~~~~h~~~v~~l  514 (577)
T 2ymu_A          475 FSPDGQ--TIASASDDKTVKLWNR--------------------------------------NGQLLQTLTGHSSSVRGV  514 (577)
T ss_dssp             ECTTSC--EEEEEETTSEEEEEET--------------------------------------TSCEEEEEECCSSCEEEE
T ss_pred             EcCCCC--EEEEEeCCCEEEEEcC--------------------------------------CCCEEEEEeCCCCCEEEE
Confidence            233332  2344455555544421                                      223334788999999999


Q ss_pred             cccCCcceEEEEecCceeecC
Q psy8448         462 THHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       462 ~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      +|+|||++||+++.||.|+||
T Consensus       515 ~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          515 AFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEE
T ss_pred             EEcCCCCEEEEEECcCEEEEE
Confidence            999999999999999999998

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.1e-41  Score=304.11  Aligned_cols=245  Identities=21%  Similarity=0.308  Sum_probs=215.3

Q ss_pred             cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC
Q psy8448         144 DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK  223 (482)
Q Consensus       144 ~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~  223 (482)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+.++..+..+ ..|..+|.+++|+|++++|++|+.|+.|++||++
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            345678899999999999999999999999999999999998888 6889999999999999999999999999999999


Q ss_pred             CCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeeeccCCCccceeEEEEcCCCCCEEEEEeCC
Q psy8448         224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC-TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT  302 (482)
Q Consensus       224 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  302 (482)
                      +++.+..+.+|...|.+++|+|++++|++++.|++|++||++++.. ...+.   +|...|.+++|+|.++.++++++.|
T Consensus        86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC---CCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc---ccCCcEEEEEECCCCCCEEEEEeCC
Confidence            9999999999999999999999999999999999999999998743 34444   8899999999999665899999999


Q ss_pred             CeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcC--CCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceee
Q psy8448         303 NTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSP--RGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN  379 (482)
Q Consensus       303 ~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~--~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (482)
                      +.|++||+ .+.....+..++  ...+..+.|+|  ++.+|++|+.|+.|+                  +|+..++    
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~------------------iWd~~~~----  218 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIK------------------IWDYQTK----  218 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEE------------------EEETTTT----
T ss_pred             CeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEE------------------EEeCCCC----
Confidence            99999999 444444444332  56788888876  788999999999999                  5555555    


Q ss_pred             cccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccccee
Q psy8448         380 TVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVI  459 (482)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  459 (482)
                                                 +.                             ..          .+.+|...|+
T Consensus       219 ---------------------------~~-----------------------------~~----------~~~~h~~~v~  232 (304)
T 2ynn_A          219 ---------------------------SC-----------------------------VA----------TLEGHMSNVS  232 (304)
T ss_dssp             ---------------------------EE-----------------------------EE----------EEECCSSCEE
T ss_pred             ---------------------------cc-----------------------------ce----------eeCCCCCCEE
Confidence                                       11                             22          6778999999


Q ss_pred             eccccCCcceEEEEecCceeecC
Q psy8448         460 GLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       460 ~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      +++|+|++++|+||+.||+|++|
T Consensus       233 ~~~~~p~~~~l~s~s~Dg~i~iW  255 (304)
T 2ynn_A          233 FAVFHPTLPIIISGSEDGTLKIW  255 (304)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEE
Confidence            99999999999999999999999

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.9e-41  Score=308.84  Aligned_cols=274  Identities=16%  Similarity=0.248  Sum_probs=234.1

Q ss_pred             CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448          64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ  141 (482)
Q Consensus        64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  141 (482)
                      .|+|..+..  .++.+.+|+.......     .....|...|.+++|+|++++|++|+.|+.|++|++.+++...    .
T Consensus        64 s~d~~~l~s~s~Dg~v~iWd~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~----~  134 (340)
T 1got_B           64 GTDSRLLLSASQDGKLIIWDSYTTNKV-----HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV----R  134 (340)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTCCEE-----EEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC----E
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCcc-----eEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc----e
Confidence            355555443  4677888886544322     2234799999999999999999999999999999998764211    1


Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG  221 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d  221 (482)
                      ....+.+|...|.++.|++++. +++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++.++++|+.|+.|++||
T Consensus       135 ~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd  212 (340)
T 1got_B          135 VSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             EEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            2234556889999999998875 899999999999999999998888 68999999999999999999999999999999


Q ss_pred             CCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      ++++++...+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.. ..+...|.+++|+|++ .++++++.
T Consensus       213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~g-~~l~~g~~  290 (340)
T 1got_B          213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKSG-RLLLAGYD  290 (340)
T ss_dssp             TTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTS-SEEEEEET
T ss_pred             CCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEECCCC-CEEEEECC
Confidence            999999999999999999999999999999999999999999999887766641 1334579999999999 89999999


Q ss_pred             CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         302 TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       302 d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      |+.|++||. .++.+..+..|   ...|.+++|+|+|.+|++|+.||.|+||+
T Consensus       291 d~~i~vwd~~~~~~~~~~~~h---~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          291 DFNCNVWDALKADRAGVLAGH---DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSEEEEEETTTCCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCeEEEEEcccCcEeeEeecC---CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999 67777777665   78999999999999999999999999774

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-40  Score=335.69  Aligned_cols=248  Identities=23%  Similarity=0.342  Sum_probs=211.5

Q ss_pred             eeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          94 QIKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      ..+.+|++.|++++|+|+ +++|++|+.||+|++|++.+.....   ......+.+|...|.+++|+|++++|++|+.||
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~---~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY---GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS---CEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc---ccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            345699999999999986 5799999999999999998654221   112234567899999999999999999999999


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe---eccccceeEEEEcCCC--
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF---RGHSSFVNDITFTADG--  247 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~l~~~~~~--  247 (482)
                      .|++||+.++.....+ .+|...|.+++|+|++++|++++.|+.|++||+.........   .+|...|.+++|+|++  
T Consensus       453 ~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             EEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             cEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            9999999999998888 689999999999999999999999999999998655433322   3688899999999986  


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCc
Q psy8448         248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGG  326 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~  326 (482)
                      ..|++++.|+.|++||+++++....+.   +|...|.+++|+|++ .++++++.|+.|++||+ +++.+..+..    ..
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~----~~  603 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLA---GHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLEA----NS  603 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCBC----SS
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEecC----CC
Confidence            689999999999999999998888776   889999999999998 89999999999999999 5666655543    46


Q ss_pred             CEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         327 DFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       327 ~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      .+.+++|+|++.+|++++ ++.|++|++
T Consensus       604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~  630 (694)
T 3dm0_A          604 VIHALCFSPNRYWLCAAT-EHGIKIWDL  630 (694)
T ss_dssp             CEEEEEECSSSSEEEEEE-TTEEEEEET
T ss_pred             cEEEEEEcCCCcEEEEEc-CCCEEEEEC
Confidence            799999999999888766 455995544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-40  Score=308.67  Aligned_cols=271  Identities=15%  Similarity=0.199  Sum_probs=216.2

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      +++.+.+|+.........+.. ...+|...|++++|+|++++ ++++.||+|+|||+.+++.......    ...+|...
T Consensus        68 wd~~v~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~----~~~~h~~~  141 (357)
T 4g56_B           68 WGGSIWVFKDPEGAPNESLCT-AGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKF----AKYEHDDI  141 (357)
T ss_dssp             CCEEEEEESSCC---CGGGCS-EEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCE----EECCCSSC
T ss_pred             ccCeEEEEECCCCCcceeEec-ccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEee----ccCCCCCC
Confidence            345566666544433333332 23479999999999999865 5577899999999998875443322    23357899


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCCceEEEe
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKMLKEF  231 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  231 (482)
                      |++++|+|++++|++++.|+.|++||+++++.+..+ ..|...|.+++|+|++. ++++++.|+.|++||++++++...+
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~  220 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI  220 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence            999999999999999999999999999999999988 68999999999999874 7899999999999999998876655


Q ss_pred             e--ccccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448         232 R--GHSSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM  308 (482)
Q Consensus       232 ~--~~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~  308 (482)
                      .  .+...+.+++|+|+ +.+|++|+.|+.|++||++++++...+.   .+...|.+++|+|++..+|++++.|++|++|
T Consensus       221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~lasgs~D~~i~iw  297 (357)
T 4g56_B          221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA---VHSQNITGLAYSYHSSPFLASISEDCTVAVL  297 (357)
T ss_dssp             CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC---CCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe---ccceeEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence            4  46778999999997 5688899999999999999998888877   8889999999999987789999999999999


Q ss_pred             EcCCcEEEEecCCcccCcCEEEEEEcC-CCCEEEEEeCCcEEEEEeehh
Q psy8448         309 NMQGQIVRSLSSGKREGGDFLCCTTSP-RGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       309 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      |++...+.....   |...|++++|+| ++.+|++++.||.|++|+++.
T Consensus       298 d~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          298 DADFSEVFRDLS---HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CTTSCEEEEECC---CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             ECCCCcEeEECC---CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            995444434433   378999999998 799999999999999887753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.6e-40  Score=309.40  Aligned_cols=244  Identities=11%  Similarity=0.111  Sum_probs=211.6

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc--eeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGK--IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      ...|.++|++++|+|++++|++|+.|+.|++||+.+++  ....        +.+|...|.+++|+|++++|++++.||.
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~l~~~~~dg~   75 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE--------LKEHNGQVTGVDWAPDSNRIVTCGTDRN   75 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE--------EECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee--------ecCCCCcccEEEEeCCCCEEEEEcCCCe
Confidence            34689999999999999999999999999999998876  3333        3346889999999999999999999999


Q ss_pred             EEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce---E-EEeeccccceeEEEEcCCCC
Q psy8448         174 VKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM---L-KEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~-~~~~~~~~~i~~l~~~~~~~  248 (482)
                      |++||+.+++....+. ..|...|.+++|+|++++|++++.|+.|++||++.++.   . ....+|...|.+++|+|+++
T Consensus        76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  155 (372)
T 1k8k_C           76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  155 (372)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence            9999998887554432 56888999999999999999999999999999988763   2 33356889999999999999


Q ss_pred             EEEEEeCCCcEEEEECC------------------CCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         249 SVLSASSDGTVKMWNLK------------------TTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                      +|++++.||.|++||++                  .++.+..+.   .|...|.+++|+|++ .++++++.|+.|++||+
T Consensus       156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANG-SRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSS-SEEEEEETTTEEEEEEG
T ss_pred             EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCC-CEEEEEeCCCEEEEEEC
Confidence            99999999999999954                  566666665   788899999999998 89999999999999999


Q ss_pred             -CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         311 -QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       311 -~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                       .++.+..+..+   ...+.+++|+|++.+|++| .|+.+++|++.
T Consensus       232 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~  273 (372)
T 1k8k_C          232 DKKMAVATLASE---TLPLLAVTFITESSLVAAG-HDCFPVLFTYD  273 (372)
T ss_dssp             GGTTEEEEEECS---SCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             CCCceeEEEccC---CCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence             68888888755   6789999999999988877 99999977654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.4e-41  Score=314.63  Aligned_cols=298  Identities=14%  Similarity=0.184  Sum_probs=244.1

Q ss_pred             cceeeecCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC----C
Q psy8448          91 LSKQIKFGSKSHVECARFSPD----GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD----S  162 (482)
Q Consensus        91 ~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~----~  162 (482)
                      ....+..+|.++|++++|+|+    ...+++++.++.|++||+.+++....+.....   ..|...|++++|+|+    +
T Consensus         9 ~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~   85 (366)
T 3k26_A            9 CVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD---ADADENFYTCAWTYDSNTSH   85 (366)
T ss_dssp             EEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC---SCTTCCEEEEEEEECTTTCC
T ss_pred             EEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc---cCCCCcEEEEEeccCCCCCC
Confidence            334667799999999999984    45566666678999999998876655543321   125688999999998    6


Q ss_pred             CEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEe---eccccce
Q psy8448         163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEF---RGHSSFV  238 (482)
Q Consensus       163 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i  238 (482)
                      ++|++++.||.|++||+.+++.+..+ ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+   .+|...|
T Consensus        86 ~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  164 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV  164 (366)
T ss_dssp             EEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred             CEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence            79999999999999999999998888 68999999999999 8999999999999999999999998888   6899999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee-------------------------ccCCCccceeEEEEcCCCC
Q psy8448         239 NDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK-------------------------SLGASDIAVNSIHLLPKNT  293 (482)
Q Consensus       239 ~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------~~~~~~~~v~~i~~~~~~~  293 (482)
                      .+++|+|++++|++++.||.|++||+++++....+.                         ....|...|.+++|+  + 
T Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-  241 (366)
T 3k26_A          165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-  241 (366)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-
T ss_pred             eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-
Confidence            999999999999999999999999999876543332                         111388899999998  3 


Q ss_pred             CEEEEEeCCCeEEEEEcC-Cc--------------EEEEecCCcccCcCEEEEEEcCC--CCEEEEEeCCcEEEEEeehh
Q psy8448         294 EHFVVCNKTNTVVIMNMQ-GQ--------------IVRSLSSGKREGGDFLCCTTSPR--GEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       294 ~~l~~~~~d~~i~i~d~~-~~--------------~~~~~~~~~~~~~~v~~~~~~~~--g~~l~~~~~dg~i~iw~~~~  356 (482)
                      .++++++.|+.|++||+. +.              .+..+..+   ...|.+++|+|+  +++|++|+.||.|++     
T Consensus       242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~~l~~~~~dg~i~v-----  313 (366)
T 3k26_A          242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS---QCDIWYMRFSMDFWQKMLALGNQVGKLYV-----  313 (366)
T ss_dssp             TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS---SCCSSCCCCEECTTSSEEEEECTTSCEEE-----
T ss_pred             CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc---CCcEEEEEEcCCCCCcEEEEEecCCcEEE-----
Confidence            799999999999999984 32              24444443   677899999999  999999999999995     


Q ss_pred             hhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhh
Q psy8448         357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSL  436 (482)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (482)
                                   |++.++.....                           .                            
T Consensus       314 -------------wd~~~~~~~~~---------------------------~----------------------------  325 (366)
T 3k26_A          314 -------------WDLEVEDPHKA---------------------------K----------------------------  325 (366)
T ss_dssp             -------------EECCSSSGGGC---------------------------E----------------------------
T ss_pred             -------------EECCCCCCccc---------------------------c----------------------------
Confidence                         55544410000                           0                            


Q ss_pred             ccccCcccccccCcceec--ccceeeccccCCcceEEEEecCceeecC
Q psy8448         437 LRQTDPMIFMKQHEPEVH--EKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       437 ~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                       ..          .+.+|  ...|++++|+|++++|++++.||.|++|
T Consensus       326 -~~----------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  362 (366)
T 3k26_A          326 -CT----------TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW  362 (366)
T ss_dssp             -EE----------EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             -ce----------EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence             11          44455  7889999999999999999999999998

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-41  Score=321.30  Aligned_cols=333  Identities=16%  Similarity=0.258  Sum_probs=258.2

Q ss_pred             CCCCCc-eeec--cCCccccccc----ccccc------ccccceeee-----cCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q psy8448          63 LLPPGT-TIDL--FRGKAAMKDQ----EEEKY------PTQLSKQIK-----FGSKSHVECARFSPDGQYLITGSVDGFI  124 (482)
Q Consensus        63 ~~~~g~-~~~~--~~~~~~~~~~----~~~~~------~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~~~dg~v  124 (482)
                      +.|+|. .++.  .++.+.+|+.    .....      ...+.....     .+|.+.|++++|+|++++|++|+.||.|
T Consensus        53 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  132 (425)
T 1r5m_A           53 WNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGEL  132 (425)
T ss_dssp             ECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeE
Confidence            346666 4444  3577888888    44441      122221111     1268899999999999999999999999


Q ss_pred             EEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCC---------
Q psy8448         125 EVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLG---------  195 (482)
Q Consensus       125 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------  195 (482)
                      ++|| .+++....+.        .|...|.+++|+|++++|++++.||.|++||+.+++.+..+ ..+...         
T Consensus       133 ~i~~-~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~  202 (425)
T 1r5m_A          133 RLWN-KTGALLNVLN--------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENH  202 (425)
T ss_dssp             EEEE-TTSCEEEEEC--------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE-CCC------------
T ss_pred             EEEe-CCCCeeeecc--------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeeccc
Confidence            9999 5555444333        46789999999999999999999999999999999988887 455555         


Q ss_pred             ------eEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy8448         196 ------VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC  269 (482)
Q Consensus       196 ------v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~  269 (482)
                            +.+++|+|++ .+++++.+|.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus       203 ~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          203 SGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             ---CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred             cCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence                  8999999875 688999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE
Q psy8448         270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV  348 (482)
Q Consensus       270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~  348 (482)
                      ...+.   .|...|.+++|+|++  .+++++.|+.|++||+ .++.+..+..+   ...+.+++|+|++++|++++.||.
T Consensus       282 ~~~~~---~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~  353 (425)
T 1r5m_A          282 QNCFY---GHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVD---GVPIFAGRISQDGQKYAVAFMDGQ  353 (425)
T ss_dssp             SEEEC---CCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECT---TCCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceEec---CCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccC---CccEEEEEEcCCCCEEEEEECCCe
Confidence            77776   788899999999987  8999999999999999 57777776654   678999999999999999999999


Q ss_pred             EEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHH
Q psy8448         349 LVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELR  428 (482)
Q Consensus       349 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  428 (482)
                      |++|+++........     ......+                       .+                            
T Consensus       354 i~i~~~~~~~~~~~~-----~~~~~~~-----------------------~~----------------------------  377 (425)
T 1r5m_A          354 VNVYDLKKLNSKSRS-----LYGNRDG-----------------------IL----------------------------  377 (425)
T ss_dssp             EEEEECHHHHC---------------------------------------------------------------------
T ss_pred             EEEEECCCCccceee-----eeccccc-----------------------cc----------------------------
Confidence            997776532211100     0000000                       00                            


Q ss_pred             hhhhhhhhccccCcccccccCcceeccc--ceeeccccCCcceEEEEecCceeecC
Q psy8448         429 ELGAARSLLRQTDPMIFMKQHEPEVHEK--LVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                  .+....++..+.+|..  .|++++|+|++++|++++.||.|++|
T Consensus       378 ------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          378 ------------NPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV  421 (425)
T ss_dssp             -------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred             ------------CcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEE
Confidence                        0001112226778866  89999999999999999999999998

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.3e-41  Score=311.30  Aligned_cols=311  Identities=14%  Similarity=0.198  Sum_probs=240.8

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEE-EEEeC---CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---C
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYL-ITGSV---DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---S  162 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~  162 (482)
                      +....+..+|...|++++|+|+++.+ ++|+.   ||.|++||+.+++.......       +|...|.+++|+|+   +
T Consensus         8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~   80 (357)
T 3i2n_A            8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-------EKAKPIKCGTFGATSLQQ   80 (357)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-------EESSCEEEEECTTCCTTT
T ss_pred             HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-------cccCcEEEEEEcCCCCCC
Confidence            44455667899999999999998655 55655   89999999998876543332       36789999999998   6


Q ss_pred             CEEEEEeCCCcEEEEEcCCCe-EeEEeecccCCCeEEEEE------ccCCCEEEEEECCCeEEEEeCCCCc-eEEEeecc
Q psy8448         163 EMLASGSQSGKVKIWKIATGQ-CLRKLEKAHSLGVTCIQF------SRDNSQILTASFDTYVRIHGLKSGK-MLKEFRGH  234 (482)
Q Consensus       163 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~------~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~  234 (482)
                      ++|++++.||.|++||+.+++ ....+ ..|...|.+++|      +|++++|++++.|+.|++||+++++ .+..+..|
T Consensus        81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A           81 RYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV  159 (357)
T ss_dssp             CCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred             ceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence            999999999999999999887 77777 689999999955      6789999999999999999999887 67777665


Q ss_pred             cc----ceeEEE----EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC---CCCCEEEEEeCCC
Q psy8448         235 SS----FVNDIT----FTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP---KNTEHFVVCNKTN  303 (482)
Q Consensus       235 ~~----~i~~l~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~l~~~~~d~  303 (482)
                      .+    .+.+++    |+|++++|++++.||.|++||+++++.....    .+...|.+++|+|   ++ ..+++++.|+
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~~~~~~~~-~~l~~~~~dg  234 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET----NIKNGVCSLEFDRKDISM-NKLVATSLEG  234 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEESCSSSSC-CEEEEEESTT
T ss_pred             CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec----CCCCceEEEEcCCCCCCC-CEEEEECCCC
Confidence            54    788888    7889999999999999999999998875543    6778999999999   66 8999999999


Q ss_pred             eEEEEEcC-CcEEEEec--CCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceee
Q psy8448         304 TVVIMNMQ-GQIVRSLS--SGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN  379 (482)
Q Consensus       304 ~i~i~d~~-~~~~~~~~--~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (482)
                      .|++||++ ++....+.  ....+...|.+++|+|+++ +|++++.||.|++|+++                  ++....
T Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~  296 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE------------------YPIQRS  296 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE------------------CCSCC-
T ss_pred             eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC------------------CCcccc
Confidence            99999984 32222221  1112378999999999998 89999999999966554                  321111


Q ss_pred             cccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccccee
Q psy8448         380 TVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVI  459 (482)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  459 (482)
                      .... ++...                                                  ...-+..++..+.+|...|+
T Consensus       297 ~~~~-~g~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~v~  325 (357)
T 3i2n_A          297 KKDS-EGIEM--------------------------------------------------GVAGSVSLLQNVTLSTQPIS  325 (357)
T ss_dssp             -CCT-TSCCC--------------------------------------------------CCCCEEEEEEEEECCSSCEE
T ss_pred             cccC-CCCcc--------------------------------------------------ccccccceeeccccCCCCee
Confidence            0000 00000                                                  00001112227788999999


Q ss_pred             eccccCCcceEE-EEecCceeecC
Q psy8448         460 GLTHHPHQNLLG-TYSEDGLLRFS  482 (482)
Q Consensus       460 ~~~~sp~~~~l~-s~~~Dg~i~iW  482 (482)
                      +++|+|++++|+ |++.||.|+||
T Consensus       326 ~~~~s~~~~~l~~s~~~d~~i~iw  349 (357)
T 3i2n_A          326 SLDWSPDKRGLCVCSSFDQTVRVL  349 (357)
T ss_dssp             EEEECSSSTTEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCcEEEE
Confidence            999999999998 89999999998

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-41  Score=319.68  Aligned_cols=332  Identities=14%  Similarity=0.208  Sum_probs=241.8

Q ss_pred             ccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCC---CceeeccccccccccccccccEEEEEEcCCCCEE
Q psy8448          90 QLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTT---GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML  165 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  165 (482)
                      ++...+..+|.+.|++++|+| ++++||+|+.||+|+|||+.+   +......      ...+|...|++++|+|++++|
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l  126 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS------LTYDCSSTVTQITMIPNFDAF  126 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS------EEEECSSCEEEEEECTTSSEE
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee------eeccCCCCEEEEEEeCCCCEE
Confidence            445555579999999999999 999999999999999999876   3311100      111378999999999999999


Q ss_pred             EEEeCCCcEEEEEcC---CCeEeEEee--------c-c--cCCCeEEEE--EccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         166 ASGSQSGKVKIWKIA---TGQCLRKLE--------K-A--HSLGVTCIQ--FSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       166 ~~~~~dg~i~iwd~~---~~~~~~~~~--------~-~--~~~~v~~i~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      ++++.||.|++||+.   +++....+.        . .  +...+.++.  +++++.+|++++.|+.|++||+++++.+.
T Consensus       127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            999999999999995   444333221        1 1  456677777  55789999999999999999999999999


Q ss_pred             Eeec--cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC----CCCCEEEEEeCCC
Q psy8448         230 EFRG--HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP----KNTEHFVVCNKTN  303 (482)
Q Consensus       230 ~~~~--~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~l~~~~~d~  303 (482)
                      .+..  |...|++++|+|++++|++++.||.|++||+++++++..+..  .+..+|.+++|+|    ++ .++++++.|+
T Consensus       207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg  283 (437)
T 3gre_A          207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNS-VIVVGGSSKT  283 (437)
T ss_dssp             EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTE-EEEEEESTTE
T ss_pred             EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCc-cEEEEEcCCC
Confidence            9988  899999999999999999999999999999999988877643  5667899997776    34 6899999999


Q ss_pred             eEEEEEc-CCcEEEEecCCc-----------------------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhh
Q psy8448         304 TVVIMNM-QGQIVRSLSSGK-----------------------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLK  359 (482)
Q Consensus       304 ~i~i~d~-~~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~  359 (482)
                      .|++||+ +++.+..+..+.                       .+...|.+++|+ ++++|++|+.||.|++|++.    
T Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~----  358 (437)
T 3gre_A          284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN----  358 (437)
T ss_dssp             EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT----
T ss_pred             cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC----
Confidence            9999999 577777776431                       145678999999 78999999999999965544    


Q ss_pred             hhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccc
Q psy8448         360 ESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQ  439 (482)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (482)
                                    ++.....+..+......+.........      ..    ++..                       
T Consensus       359 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~-----------------------  391 (437)
T 3gre_A          359 --------------ELSSSKAVISPSRFSDVFIPTQVTANL------TM----LLRK-----------------------  391 (437)
T ss_dssp             --------------CGGGCEEEECC--CCCEEEEEEEETTE------EE----EEEE-----------------------
T ss_pred             --------------CcccceEEecccccCceEEEEEeecce------EE----EEEe-----------------------
Confidence                          443333333221111000000000000      00    0000                       


Q ss_pred             cCcccccccCcceecccceeeccccCC--cceEEEEecCceeecC
Q psy8448         440 TDPMIFMKQHEPEVHEKLVIGLTHHPH--QNLLGTYSEDGLLRFS  482 (482)
Q Consensus       440 ~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~s~~~Dg~i~iW  482 (482)
                      .+............|.+.|++++|+++  +.+|+||+.||.|+||
T Consensus       392 ~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          392 MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred             cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence            000001111145569999999999998  8899999999999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.1e-40  Score=314.77  Aligned_cols=256  Identities=15%  Similarity=0.230  Sum_probs=213.2

Q ss_pred             eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC----C---CEE
Q psy8448          93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD----S---EML  165 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~----~---~~l  165 (482)
                      ...+.+|.+.|++++|+|  ++|++|+.||.|++||+.+++....  ......+.+|...|++++|+|+    +   ++|
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP--KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG--GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC--CCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            455669999999999998  7999999999999999998762211  1122334467899999999999    9   999


Q ss_pred             EEEeCCCcEEEEEcCCCeE-----eEEeeccc-----CCCeEEEEEc----cCCCE-EEEEECCCeEEEEeCCC------
Q psy8448         166 ASGSQSGKVKIWKIATGQC-----LRKLEKAH-----SLGVTCIQFS----RDNSQ-ILTASFDTYVRIHGLKS------  224 (482)
Q Consensus       166 ~~~~~dg~i~iwd~~~~~~-----~~~~~~~~-----~~~v~~i~~~----~~~~~-l~~~~~dg~i~i~d~~~------  224 (482)
                      ++++.||.|++||+.+++.     ...+ ..|     ...|.+++|+    |++.+ |++++.||.|++||+++      
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            9999999999999988876     6666 566     5899999999    99999 99999999999999998      


Q ss_pred             CceEE-----Eee-------ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCC---ccceeEEEEc
Q psy8448         225 GKMLK-----EFR-------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS---DIAVNSIHLL  289 (482)
Q Consensus       225 ~~~~~-----~~~-------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v~~i~~~  289 (482)
                      ++.+.     .+.       .|...|.+++|+|++ +|++++.||.|++||+++++.+..+.....|   ...|.+++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            66655     663       488899999999999 9999999999999999999988888721127   8899999999


Q ss_pred             CCCCCEEEEEeCC---CeEEEEEc-CCcEEEEecCCc----------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         290 PKNTEHFVVCNKT---NTVVIMNM-QGQIVRSLSSGK----------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       290 ~~~~~~l~~~~~d---~~i~i~d~-~~~~~~~~~~~~----------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      |++ .++++++.|   +.|++||+ .++.+..+....          .+...|.+++|+|++++|++++.||.|++|+++
T Consensus       243 ~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          243 PQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             SST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCC-CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            998 899999999   99999999 677777776510          037889999999999999999999999965543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-40  Score=358.04  Aligned_cols=363  Identities=19%  Similarity=0.227  Sum_probs=290.9

Q ss_pred             CCCCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccc
Q psy8448          62 GLLPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK  139 (482)
Q Consensus        62 ~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  139 (482)
                      .+.|+|..++.  .++.+.+|+......     .....+|...|++++|+|++++|++|+.||.|++||+.+++....+.
T Consensus       622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  696 (1249)
T 3sfz_A          622 CFSQDGQRIASCGADKTLQVFKAETGEK-----LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD  696 (1249)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCE-----EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence            34567766655  356788888755432     22334899999999999999999999999999999999988766554


Q ss_pred             cccccccccccccEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeE
Q psy8448         140 YQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV  217 (482)
Q Consensus       140 ~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i  217 (482)
                              +|...|.+++|+|  ++.++++++.||.|++||+.+++....+ .+|...|.+++|+|+++++++++.||.|
T Consensus       697 --------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          697 --------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTL  767 (1249)
T ss_dssp             --------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred             --------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence                    3578999999999  5568999999999999999999998888 6899999999999999999999999999


Q ss_pred             EEEeCCCCceEEEe-------------------------------------------------------eccccceeEEE
Q psy8448         218 RIHGLKSGKMLKEF-------------------------------------------------------RGHSSFVNDIT  242 (482)
Q Consensus       218 ~i~d~~~~~~~~~~-------------------------------------------------------~~~~~~i~~l~  242 (482)
                      ++||+++++....+                                                       .+|...|.+++
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~  847 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD  847 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence            99999776543322                                                       15778899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q psy8448         243 FTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG----------  312 (482)
Q Consensus       243 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~----------  312 (482)
                      |+|+++++++++.||.|++||+.++.....+.   +|...|.+++|+|++ ..+++++.|+.|++|++..          
T Consensus       848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~  923 (1249)
T 3sfz_A          848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCR---GHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLK  923 (1249)
T ss_dssp             ECSSTTEEEEECSSSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCceeeecC---CCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeeccc
Confidence            99999999999999999999999998888777   888999999999988 7899999999999998521          


Q ss_pred             ----------------------------------------------------------------------cEEEEecCCc
Q psy8448         313 ----------------------------------------------------------------------QIVRSLSSGK  322 (482)
Q Consensus       313 ----------------------------------------------------------------------~~~~~~~~~~  322 (482)
                                                                                            +....+   .
T Consensus       924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~---~ 1000 (1249)
T 3sfz_A          924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG---V 1000 (1249)
T ss_dssp             EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC---C
T ss_pred             ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec---c
Confidence                                                                                  011111   1


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhh----------------------hcccccceeeeecccceeec
Q psy8448         323 REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKE----------------------SNLMKTLQCLQEETGVSLNT  380 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~  380 (482)
                      .|...|.+++|+|+|++|++++.||.|++|++......                      ......+.+|+..++.....
T Consensus      1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 1080 (1249)
T 3sfz_A         1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD 1080 (1249)
T ss_dssp             CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEE
Confidence            24678899999999999999999999999998642111                      11234577888888887777


Q ss_pred             ccccccceeccCC---------CcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcc
Q psy8448         381 VDSVDGFIADINN---------GHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEP  451 (482)
Q Consensus       381 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (482)
                      +..+.+.+..++.         ++.++.+                                     ..|+..++.+...+
T Consensus      1081 ~~~~~~~v~~~~~s~d~~~l~s~s~d~~v-------------------------------------~iwd~~~~~~~~~l 1123 (1249)
T 3sfz_A         1081 FTCHQGTVLSCAISSDATKFSSTSADKTA-------------------------------------KIWSFDLLSPLHEL 1123 (1249)
T ss_dssp             EECCSSCCCCEEECSSSSSCEEECCSSCC-------------------------------------CEECSSSSSCSBCC
T ss_pred             EcccCCcEEEEEECCCCCEEEEEcCCCcE-------------------------------------EEEECCCcceeeee
Confidence            7766665544332         2333333                                     22344445566688


Q ss_pred             eecccceeeccccCCcceEEEEecCceeecC
Q psy8448         452 EVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       452 ~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      .+|.+.|++++|+|+|++||+|+.||.|++|
T Consensus      1124 ~~h~~~v~~~~~s~dg~~lat~~~dg~i~vw 1154 (1249)
T 3sfz_A         1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154 (1249)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCCCEE
T ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            9999999999999999999999999999998

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.6e-40  Score=352.19  Aligned_cols=363  Identities=19%  Similarity=0.255  Sum_probs=292.0

Q ss_pred             ceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448          92 SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus        92 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      ....+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++....+.        +|...|.+++|+|++++|++++.|
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s~~~d  678 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--------AHEDEVLCCAFSSDDSYIATCSAD  678 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec--------cCCCCEEEEEEecCCCEEEEEeCC
Confidence            344566999999999999999999999999999999999988766554        467899999999999999999999


Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      |.|++||+.+++.+..+ ..|...|.+++|+|  ++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++++
T Consensus       679 ~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~  757 (1249)
T 3sfz_A          679 KKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL  757 (1249)
T ss_dssp             SEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTE
T ss_pred             CeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCE
Confidence            99999999999999988 68999999999999  5568999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeec----------------------------------------------------cC
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKS----------------------------------------------------LG  277 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------------------------------~~  277 (482)
                      |++++.||.|++||+++++....+..                                                    ..
T Consensus       758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~  837 (1249)
T 3sfz_A          758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT  837 (1249)
T ss_dssp             EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence            99999999999999987765443321                                                    01


Q ss_pred             CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       278 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      +|...+.+++|+|++ .++++++.++.|++||+ .+..+..+..+   ...|.+++|+|+|++|++++.||.+++|++..
T Consensus       838 ~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h---~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGH---LSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             SSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             CCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeeecCCC---ccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            566788999999998 89999999999999999 56777777654   78899999999999999999999999999764


Q ss_pred             hhhh-------------------------------------------------------------hcccccceeeeeccc
Q psy8448         357 YLKE-------------------------------------------------------------SNLMKTLQCLQEETG  375 (482)
Q Consensus       357 ~~~~-------------------------------------------------------------~~~~~~~~~~~~~~~  375 (482)
                      ....                                                             ......+.+|+..++
T Consensus       914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~  993 (1249)
T 3sfz_A          914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN  993 (1249)
T ss_dssp             HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred             cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence            2110                                                             112235677888777


Q ss_pred             ceeecccccccceec---------cCCCcccchhccccccCC------------------CchhhhhhhHHHHHHHHHHH
Q psy8448         376 VSLNTVDSVDGFIAD---------INNGHWDTVLKSVQSLKL------------------PEKKLIDLYEQVVLELIELR  428 (482)
Q Consensus       376 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l------------------~~~~~~~~~~~~~~~~~~~~  428 (482)
                      .....+..+.+.+..         +++++.++.++.|+...-                  ++..++..            
T Consensus       994 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~------------ 1061 (1249)
T 3sfz_A          994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSW------------ 1061 (1249)
T ss_dssp             SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEE------------
T ss_pred             ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEE------------
Confidence            766666655554432         344555666666532110                  00111110            


Q ss_pred             hhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         429 ELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                         .....+..|+..++.+...+.+|.+.|++++|+|++++|++++.||+|++|
T Consensus      1062 ---~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A         1062 ---SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp             ---ESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred             ---ECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence               111123345556666677888999999999999999999999999999998

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.8e-40  Score=304.04  Aligned_cols=277  Identities=17%  Similarity=0.270  Sum_probs=234.0

Q ss_pred             CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448          64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ  141 (482)
Q Consensus        64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  141 (482)
                      .|++..++.  .++.+.+|+.......     .....|...|.+++|+|+|++|++|+.|+.+++|++........  ..
T Consensus        73 s~d~~~l~s~s~Dg~v~vWd~~~~~~~-----~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~--~~  145 (354)
T 2pbi_B           73 CKDKRRIVSSSQDGKVIVWDSFTTNKE-----HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM--AA  145 (354)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEE-----EEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS--GG
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCcc-----eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc--cc
Confidence            355554444  3667888885443322     22337888999999999999999999999999999875432211  12


Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEE
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRI  219 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i  219 (482)
                      ....+.+|...|.+++|+|++..|++++.|++|++||+++++.+..+ .+|...|.+++|+|  ++.+|++|+.||.|++
T Consensus       146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~  224 (354)
T 2pbi_B          146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMV  224 (354)
T ss_dssp             GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEE
T ss_pred             cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            23345568999999999999999999999999999999999999888 68999999999988  4689999999999999


Q ss_pred             EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448         220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                      ||+++++++..+.+|...|.+++|+|++++|++++.|++|++||+++++.+..+.. ..+...+.+++|+|++ .+++++
T Consensus       225 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~~~~~~~~s~~g-~~l~~g  302 (354)
T 2pbi_B          225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIFGASSVDFSLSG-RLLFAG  302 (354)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTS-SEEEEE
T ss_pred             EECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCcccceeEEEEeCCC-CEEEEE
Confidence            99999999999999999999999999999999999999999999999877665542 1234578999999998 899999


Q ss_pred             eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         300 NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       300 ~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      +.|+.|++||+ ++..+..+..+   ...|.+++|+|+|++|++|+.||.|++|+
T Consensus       303 ~~d~~i~vwd~~~~~~~~~l~~h---~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          303 YNDYTINVWDVLKGSRVSILFGH---ENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCC---SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ECCCcEEEEECCCCceEEEEECC---CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999 67777777655   78999999999999999999999999774

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-40  Score=315.44  Aligned_cols=270  Identities=13%  Similarity=0.228  Sum_probs=220.5

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      ++.+.+|+......... .  ....|...|++++|+|++++|++|+.||.|++||+.+....    ......+.+|...|
T Consensus        44 d~~v~iw~~~~~~~~~~-~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~----~~~~~~~~~h~~~v  116 (416)
T 2pm9_A           44 DSSLELWSLLAADSEKP-I--ASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA----INSMARFSNHSSSV  116 (416)
T ss_dssp             CCCCEEEESSSGGGCSC-S--CCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC----CCEEEECCCSSSCC
T ss_pred             CCeEEEEEccCCCCCcE-E--EEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc----ccchhhccCCccce
Confidence            56788888765543211 1  12368999999999999999999999999999999872110    01122334578899


Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEEcCCCe------EeEEe--ecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCC
Q psy8448         154 MSLAYSRD-SEMLASGSQSGKVKIWKIATGQ------CLRKL--EKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLK  223 (482)
Q Consensus       154 ~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~--~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~  223 (482)
                      ++++|+|+ +++|++++.||.|++||+.+++      ....+  ...|...|.+++|+|+ +.+|++++.|+.|++||++
T Consensus       117 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  196 (416)
T 2pm9_A          117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK  196 (416)
T ss_dssp             CEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred             EEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence            99999998 8999999999999999998876      32222  2468889999999998 7899999999999999999


Q ss_pred             CCceEEEeecc------ccceeEEEEcCCC-CEEEEEeCCC---cEEEEECCCC-ceeeeeeccCCCccceeEEEEcCCC
Q psy8448         224 SGKMLKEFRGH------SSFVNDITFTADG-HSVLSASSDG---TVKMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKN  292 (482)
Q Consensus       224 ~~~~~~~~~~~------~~~i~~l~~~~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~  292 (482)
                      +++.+..+..+      ...|.+++|+|++ .++++++.|+   .|++||++++ .....+..  .|...|.+++|+|++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~  274 (416)
T 2pm9_A          197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ--GHQKGILSLDWCHQD  274 (416)
T ss_dssp             TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS--CCSSCEEEEEECSSC
T ss_pred             CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec--CccCceeEEEeCCCC
Confidence            99998888876      7889999999997 6899999998   9999999986 33333321  578899999999943


Q ss_pred             CCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEeeh
Q psy8448         293 TEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       293 ~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~~~  355 (482)
                      ..++++++.|+.|++||+ +++.+..+..+   ...|.+++|+|++ .+|++++.||.|++|++.
T Consensus       275 ~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          275 EHLLLSSGRDNTVLLWNPESAEQLSQFPAR---GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             SSCEEEEESSSEEEEECSSSCCEEEEEECS---SSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             CCeEEEEeCCCCEEEeeCCCCccceeecCC---CCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            389999999999999999 67777777765   6789999999999 899999999999977665

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-41  Score=324.86  Aligned_cols=323  Identities=13%  Similarity=0.101  Sum_probs=228.8

Q ss_pred             CCCCcEEEEEEcCCC---------CEEEE-------------------EeCCCeEEEEecCCCceeeccccccccccccc
Q psy8448          98 GSKSHVECARFSPDG---------QYLIT-------------------GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM  149 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~---------~~l~s-------------------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h  149 (482)
                      .+.+.|.+++|+|++         ++||+                   ++.|++|+|||+.+++....    ....+.+|
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~----~~~~l~~~  206 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV----KVQTIVHS  206 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE----EEEEEEEC
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce----EEEEEEec
Confidence            467788899998876         56666                   45788999999987764221    11123345


Q ss_pred             cccEEEEEEcCC------CCEEEEEeCCCcEEEEEcCCCeE-----------eEEeecccCCCeEEEEEccCCCEEEEEE
Q psy8448         150 EEAVMSLAYSRD------SEMLASGSQSGKVKIWKIATGQC-----------LRKLEKAHSLGVTCIQFSRDNSQILTAS  212 (482)
Q Consensus       150 ~~~i~~l~~~~~------~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~i~~~~~~~~l~~~~  212 (482)
                      .+.|.+++|+|+      +.+||+++.||+|++||+.++..           ...+ .+|...|.+++|+++ ..|++|+
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~-~~lasgs  284 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSP-TTVVCGF  284 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSS-SEEEEEE
T ss_pred             CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCC-CeEEEEe
Confidence            788999999996      57999999999999999976632           1244 578899999999986 4899999


Q ss_pred             CCCeEEEEeCCCCc-eEEEeeccccceeEE--EEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeccCCCc--cceeEE
Q psy8448         213 FDTYVRIHGLKSGK-MLKEFRGHSSFVNDI--TFTADG-HSVLSASSDGTVKMWNLKTTECTSTFKSLGASD--IAVNSI  286 (482)
Q Consensus       213 ~dg~i~i~d~~~~~-~~~~~~~~~~~i~~l--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~v~~i  286 (482)
                      .||+|++||+++++ +...+.+|...|.++  +|+|++ .+|++++.|++|++||++++++...+.   +|.  ..|.++
T Consensus       285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~~~~~~~v~~v  361 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV---SRFRGSNLVPV  361 (524)
T ss_dssp             TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE---EECSCCSCCCE
T ss_pred             CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc---cccccCcccce
Confidence            99999999999764 456688999999999  578887 899999999999999999887766654   333  347899


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhc---
Q psy8448         287 HLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESN---  362 (482)
Q Consensus       287 ~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~---  362 (482)
                      +|+|++ ..+++++.|++|++||+ .+..+..+..+   ...|++++|+|+|++|++|+.||.|++|+.........   
T Consensus       362 ~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH---~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~  437 (524)
T 2j04_B          362 VYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSR---ETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNS  437 (524)
T ss_dssp             EEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEEC---SSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC---
T ss_pred             EeCCCc-CeEEEeCCCCcEEEEECcccccceeeecC---CCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccC
Confidence            999998 78999999999999999 56655666654   78999999999999999999999999887643211110   


Q ss_pred             --ccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhcccc
Q psy8448         363 --LMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQT  440 (482)
Q Consensus       363 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (482)
                        ......+|.+.        .++++..           ++.+....+                             .. 
T Consensus       438 ~~~~~~~~v~~v~--------~sp~g~~-----------~~~~~~~~~-----------------------------~~-  468 (524)
T 2j04_B          438 SATQKSLRLWKWD--------YSIKDDK-----------YRIDSSYEV-----------------------------YP-  468 (524)
T ss_dssp             ---CCCCEEEECB--------CCSSSCE-----------EEECCCCCC-----------------------------CC-
T ss_pred             ccceeeeEEEEec--------cCCCCCe-----------EEccCCcee-----------------------------cc-
Confidence              00001122221        1222221           111110011                             00 


Q ss_pred             CcccccccCcceecccceeeccccCCcc---eEEEEecCceeecC
Q psy8448         441 DPMIFMKQHEPEVHEKLVIGLTHHPHQN---LLGTYSEDGLLRFS  482 (482)
Q Consensus       441 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s~~~Dg~i~iW  482 (482)
                      ...++.++..+.+|...|.+++|+|+++   +||+|+.||.||||
T Consensus       469 ~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw  513 (524)
T 2j04_B          469 LTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE  513 (524)
T ss_dssp             -------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred             cccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence            0011233347889999999999999965   99999999999998

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.7e-40  Score=307.89  Aligned_cols=284  Identities=13%  Similarity=0.204  Sum_probs=231.6

Q ss_pred             eecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCC
Q psy8448          95 IKFGSKSHVECARFSPDG-QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSG  172 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg  172 (482)
                      .+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+..      .+|...|.+++|+| ++++|++++.|+
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------MGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------CSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------CCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            345999999999999999 9999999999999999998876554432      24688999999999 789999999999


Q ss_pred             cEEEEEcCCCeEeEEeec--ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC-E
Q psy8448         173 KVKIWKIATGQCLRKLEK--AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH-S  249 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~  249 (482)
                      .|++||+.+ .....+..  .+...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence            999999986 44444422  23478999999999999999999999999999 5778889999999999999999999 9


Q ss_pred             EEEEeCCCcEEEEECCC----CceeeeeeccCCCccceeEEEEcC-CCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcc
Q psy8448         250 VLSASSDGTVKMWNLKT----TECTSTFKSLGASDIAVNSIHLLP-KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR  323 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~  323 (482)
                      |++++.|+.|++||+++    +..+..+    .|...|.+++|+| ++ .++++++.|+.|++||+ +++....+..+..
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccccccccccc
Confidence            99999999999999998    4455554    5788999999999 77 89999999999999999 4444333332210


Q ss_pred             --------------cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccccccccee
Q psy8448         324 --------------EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIA  389 (482)
Q Consensus       324 --------------~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (482)
                                    +...+..++|+|+|++  +++.||.|+                  +|+..++..            
T Consensus       295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~------------------iwd~~~~~~------------  342 (383)
T 3ei3_B          295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTID------------------IYDANSGGL------------  342 (383)
T ss_dssp             CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEE------------------EEETTTCCE------------
T ss_pred             cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEE------------------EEecCCCce------------
Confidence                          1244556777777776  778999999                  566655521            


Q ss_pred             ccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCccee--cccceeeccccCCc
Q psy8448         390 DINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEV--HEKLVIGLTHHPHQ  467 (482)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~  467 (482)
                                                                      ..          .+.+  |...+..++|+|++
T Consensus       343 ------------------------------------------------~~----------~l~~~~~~~~~~~~~~s~~g  364 (383)
T 3ei3_B          343 ------------------------------------------------VH----------QLRDPNAAGIISLNKFSPTG  364 (383)
T ss_dssp             ------------------------------------------------EE----------EECBTTBCSCCCEEEECTTS
T ss_pred             ------------------------------------------------ee----------eecCCCCCceEEEEEEecCc
Confidence                                                            11          3333  56678888999999


Q ss_pred             ceEEEEecCceeecC
Q psy8448         468 NLLGTYSEDGLLRFS  482 (482)
Q Consensus       468 ~~l~s~~~Dg~i~iW  482 (482)
                      ++|++|+ ||.|+||
T Consensus       365 ~~l~s~s-d~~i~iw  378 (383)
T 3ei3_B          365 DVLASGM-GFNILIW  378 (383)
T ss_dssp             SEEEEEE-TTEEEEE
T ss_pred             cEEEEec-CCcEEEE
Confidence            9999997 9999998

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.2e-39  Score=292.10  Aligned_cols=266  Identities=22%  Similarity=0.358  Sum_probs=224.5

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++.+.+|+..............+.+|...|++++|+|++++|++|+.|++|++||+.+++....+        .+|...
T Consensus        38 ~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~--------~~h~~~  109 (319)
T 3frx_A           38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF--------VGHKSD  109 (319)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSC
T ss_pred             CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE--------ccCCCc
Confidence            367788898765544333334455699999999999999999999999999999999998765544        346889


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccC------CCEEEEEECCCeEEEEeCCCCc
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD------NSQILTASFDTYVRIHGLKSGK  226 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~------~~~l~~~~~dg~i~i~d~~~~~  226 (482)
                      |.+++|+|++++|++++.|+.|++||++ ++.+..+ .+|...|.+++|.|.      +..+++++.|+.|++||+++.+
T Consensus       110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  187 (319)
T 3frx_A          110 VMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ  187 (319)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence            9999999999999999999999999986 4566666 689999999999985      4489999999999999999999


Q ss_pred             eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         227 MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       227 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                      ....+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.    ....|.+++|+|++ .++++++. +.++
T Consensus       188 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~-~~la~~~~-~~i~  261 (319)
T 3frx_A          188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQDEVFSLAFSPNR-YWLAAATA-TGIK  261 (319)
T ss_dssp             EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CCSCEEEEEECSSS-SEEEEEET-TEEE
T ss_pred             hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEcCCC-CEEEEEcC-CCcE
Confidence            999999999999999999999999999999999999999999888875    34689999999998 67777665 5699


Q ss_pred             EEEcCC-cEEEEecCC-----cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         307 IMNMQG-QIVRSLSSG-----KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       307 i~d~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      +|+++. ..+..+...     ..+...+.+++|+|||++|++|+.||.|++|++
T Consensus       262 v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          262 VFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             EEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence            999954 444444322     223567899999999999999999999996664

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.7e-39  Score=309.16  Aligned_cols=332  Identities=18%  Similarity=0.173  Sum_probs=258.7

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT  181 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~  181 (482)
                      .+++++|+|++++|++|+.||.|++||+.+++....+..+         ..+....|+|++++|++++.||.|++||+.+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  128 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA---------DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF  128 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC---------CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC---------CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence            3558999999999999999999999999887654433322         3455667899999999999999999999998


Q ss_pred             CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEE
Q psy8448         182 GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM  261 (482)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i  261 (482)
                      ++....+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus       129 ~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i  207 (420)
T 3vl1_A          129 NLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL  207 (420)
T ss_dssp             CEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            8887776 689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCceeeeeeccCCCccceeEEE---------------------EcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448         262 WNLKTTECTSTFKSLGASDIAVNSIH---------------------LLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS  319 (482)
Q Consensus       262 ~d~~~~~~~~~~~~~~~~~~~v~~i~---------------------~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~  319 (482)
                      ||+++++....+.....+...+.+++                     |+|++ .++++++.||.|++||+ .++.+..+.
T Consensus       208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            99999998888875444445555555                     46777 79999999999999999 566666665


Q ss_pred             CCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccc
Q psy8448         320 SGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDT  398 (482)
Q Consensus       320 ~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (482)
                      ..  +...+.+++|+|+++ +|++|+.||.|++|+++....      .+..+....+..+..+..+++.  .+++++.|+
T Consensus       287 ~~--~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~d~  356 (420)
T 3vl1_A          287 SK--FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC------PVGEFLINEGTPINNVYFAAGA--LFVSSGFDT  356 (420)
T ss_dssp             CT--TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS------CSEEEEESTTSCEEEEEEETTE--EEEEETTTE
T ss_pred             cc--cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC------chhhhhccCCCCceEEEeCCCC--EEEEecCCc
Confidence            43  367899999999999 999999999999998864321      1223333233333333333332  466777888


Q ss_pred             hhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcc---eEEEEec
Q psy8448         399 VLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQN---LLGTYSE  475 (482)
Q Consensus       399 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s~~~  475 (482)
                      .++.|+.........+                            ........+.+|...|.+++|+|+++   .|++.+.
T Consensus       357 ~v~iw~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~  408 (420)
T 3vl1_A          357 SIKLDIISDPESERPA----------------------------IEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK  408 (420)
T ss_dssp             EEEEEEECCTTCCSCE----------------------------ECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred             cEEEEeccCCCCCccc----------------------------eeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence            8877754221000000                            00011114557888999999999999   6777777


Q ss_pred             CceeecC
Q psy8448         476 DGLLRFS  482 (482)
Q Consensus       476 Dg~i~iW  482 (482)
                      +|.+++|
T Consensus       409 ~g~~~~~  415 (420)
T 3vl1_A          409 NNFCALY  415 (420)
T ss_dssp             TTEEEEE
T ss_pred             CceEEEE
Confidence            9999988

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.3e-40  Score=314.96  Aligned_cols=302  Identities=15%  Similarity=0.157  Sum_probs=231.2

Q ss_pred             ecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCc
Q psy8448          96 KFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGK  173 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~  173 (482)
                      ..+|...|+||+|+| ++++||+|+.||.|+|||+.+++....+      .+.+|.+.|++++|+| ++++|++|+.||+
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~------~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI------KGIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE------CCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE------EccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            347899999999999 6779999999999999999877644333      2345789999999998 7889999999999


Q ss_pred             EEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC-EEE
Q psy8448         174 VKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH-SVL  251 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~  251 (482)
                      |++||++++....... ..+...+.+++|+|++.+|++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +|+
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEE
Confidence            9999998765433321 1234457899999999999999999999999986 456778889999999999999876 788


Q ss_pred             EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcc---cCcC
Q psy8448         252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR---EGGD  327 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~---~~~~  327 (482)
                      +++.|+.|++||+++.+....+....+|...|.+++|+|++ .+|++++.|+.|++||+ .+.....+..+..   ....
T Consensus       268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  346 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT  346 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred             EecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence            99999999999999887666655455789999999999998 89999999999999999 5666655544321   1123


Q ss_pred             EEEEEEcCCCCEEEEEeC-CcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhcccccc
Q psy8448         328 FLCCTTSPRGEWIYCVGE-DMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSL  406 (482)
Q Consensus       328 v~~~~~~~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (482)
                      +..+.|+|++..+++++. |+.+.++.       ......+++|+..+|..+.                           
T Consensus       347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~~~i~iwd~~~g~~~~---------------------------  392 (435)
T 4e54_B          347 PIKAAWHPRYNLIVVGRYPDPNFKSCT-------PYELRTIDVFDGNSGKMMC---------------------------  392 (435)
T ss_dssp             CCBCEECSSSSCEEEECCCCTTSCCSS-------TTCCCCEEEECSSSCCEEE---------------------------
T ss_pred             eEEEEEcCCCCEEEEEEcCCCCeEEEE-------ecCCCEEEEEECCCCcEEE---------------------------
Confidence            345678888887776643 33322110       1111123377777662111                           


Q ss_pred             CCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeec-cccCCcceEEEEecCceeecC
Q psy8448         407 KLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGL-THHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       407 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                      .          ...+|...|.++ +|+|+|++||+|+ |++|+||
T Consensus       393 --------------------------------~----------l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW  426 (435)
T 4e54_B          393 --------------------------------Q----------LYDPESSGISSLNEFNPMGDTLASAM-GYHILIW  426 (435)
T ss_dssp             --------------------------------E----------ECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred             --------------------------------E----------EeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence                                            0          223677888887 6999999999987 8899999

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-39  Score=305.35  Aligned_cols=280  Identities=19%  Similarity=0.308  Sum_probs=239.3

Q ss_pred             CCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          98 GSKSH--VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        98 ~h~~~--v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      +|...  +.+++|++  ..+++++.||.|++||+.+++....+...       |...|++++|+|++++|++|+.||.|+
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-------~~~~v~~v~~s~~~~~l~~~~~dg~i~  159 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETD-------ESTYVASVKWSHDGSFLSVGLGNGLVD  159 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECC-------TTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecC-------CCCCEEEEEECCCCCEEEEECCCCeEE
Confidence            55554  44566664  56788889999999999998876655443       578899999999999999999999999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC-CCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK-SGKMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      +||+.+++.+..+ ..|...|.+++|  ++..+++++.||.|++||++ ....+..+.+|...|.+++|+|++++|++++
T Consensus       160 iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          160 IYDVESQTKLRTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             EEETTTCCEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEECcCCeEEEEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            9999999999888 689999999999  45799999999999999999 5667888899999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe--CCCeEEEEEc-CCcEEEEecCCcccCcCEEEE
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN--KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCC  331 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~  331 (482)
                      .|+.|++||+++++....+.   .|...|.+++|+|++..++++++  .|+.|++||+ .++.+..+..    ...+.++
T Consensus       237 ~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~----~~~v~~~  309 (401)
T 4aez_A          237 NDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA----GSQVTSL  309 (401)
T ss_dssp             TTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC----SSCEEEE
T ss_pred             CCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC----CCcEEEE
Confidence            99999999999998888776   78899999999999878888876  7999999999 6777777753    5679999


Q ss_pred             EEcCCCCEEEEE--eCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCC
Q psy8448         332 TTSPRGEWIYCV--GEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLP  409 (482)
Q Consensus       332 ~~~~~g~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  409 (482)
                      +|+|++++++++  +.||.|++|                  +..++...                             . 
T Consensus       310 ~~s~~~~~l~~~~g~~dg~i~v~------------------~~~~~~~~-----------------------------~-  341 (401)
T 4aez_A          310 IWSPHSKEIMSTHGFPDNNLSIW------------------SYSSSGLT-----------------------------K-  341 (401)
T ss_dssp             EECSSSSEEEEEECTTTCEEEEE------------------EEETTEEE-----------------------------E-
T ss_pred             EECCCCCeEEEEeecCCCcEEEE------------------ecCCccce-----------------------------e-
Confidence            999999999994  489999955                  44443000                             0 


Q ss_pred             chhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         410 EKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                  ..          .+.+|...|.+++|+|++++|++++.||.|++|
T Consensus       342 ----------------------------~~----------~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw  376 (401)
T 4aez_A          342 ----------------------------QV----------DIPAHDTRVLYSALSPDGRILSTAASDENLKFW  376 (401)
T ss_dssp             ----------------------------EE----------EEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred             ----------------------------EE----------EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence                                        11          456899999999999999999999999999998

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.7e-39  Score=288.93  Aligned_cols=251  Identities=20%  Similarity=0.236  Sum_probs=208.6

Q ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeCCC
Q psy8448          95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQSG  172 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~dg  172 (482)
                      ++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+...      .....+.+|.++|.+++|+|  ++++|++|+.|+
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~   77 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence            4569999999999999999999999999999999975421      12234556889999999986  489999999999


Q ss_pred             cEEEEEcCCCe--EeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCce--EEEeeccccceeEEEEcCC
Q psy8448         173 KVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGKM--LKEFRGHSSFVNDITFTAD  246 (482)
Q Consensus       173 ~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~l~~~~~  246 (482)
                      +|++||+++++  .+..+ ..|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+.+|...|.+++|+|+
T Consensus        78 ~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             EEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence            99999998874  44445 578999999999997  88999999999999999987642  4567789999999999997


Q ss_pred             -------------CCEEEEEeCCCcEEEEECCCCc----eeeeeeccCCCccceeEEEEcCCC--CCEEEEEeCCCeEEE
Q psy8448         247 -------------GHSVLSASSDGTVKMWNLKTTE----CTSTFKSLGASDIAVNSIHLLPKN--TEHFVVCNKTNTVVI  307 (482)
Q Consensus       247 -------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~i  307 (482)
                                   +++|++++.|+.|++||+++++    ....+.   +|...|.+++|+|++  ..++++++.|++|++
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~---~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec---CCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence                         5799999999999999998765    334444   899999999999985  478999999999999


Q ss_pred             EEcCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         308 MNMQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       308 ~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ||++..   ..........+...|.+++|+|+|++|++++.||.|++|+..
T Consensus       234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            999431   122222222346789999999999999999999999988654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.4e-39  Score=295.41  Aligned_cols=281  Identities=19%  Similarity=0.314  Sum_probs=222.1

Q ss_pred             CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448          64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ  141 (482)
Q Consensus        64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  141 (482)
                      .|+|..++.  .++.+.+|+.......  ....+..+|...|++++|+|++++|++|+.|++|++|++.++....     
T Consensus        25 sp~g~~las~~~D~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~-----   97 (345)
T 3fm0_A           25 NPAGTLLASCGGDRRIRIWGTEGDSWI--CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC-----   97 (345)
T ss_dssp             CTTSSCEEEEETTSCEEEEEEETTEEE--EEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE-----
T ss_pred             CCCCCEEEEEcCCCeEEEEEcCCCcce--eeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE-----
Confidence            344554443  3677888886544321  1123345899999999999999999999999999999988764321     


Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEE
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ---CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVR  218 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~  218 (482)
                       ...+.+|...|.+++|+|++++|++|+.|+.|++||+.++.   .+..+ ..|...|.+++|+|++.+|++++.|+.|+
T Consensus        98 -~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~  175 (345)
T 3fm0_A           98 -VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVK  175 (345)
T ss_dssp             -EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEE
T ss_pred             -EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEE
Confidence             22345678999999999999999999999999999998764   34444 68999999999999999999999999999


Q ss_pred             EEeCCCCc--eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------------eeeeeeccCCCcc
Q psy8448         219 IHGLKSGK--MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE---------------CTSTFKSLGASDI  281 (482)
Q Consensus       219 i~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~  281 (482)
                      +||+++++  +...+.+|...|.+++|+|++++|++++.|++|++||.....               ++..+.  ..|..
T Consensus       176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~  253 (345)
T 3fm0_A          176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS--GFHSR  253 (345)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC--SSCSS
T ss_pred             EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec--CCCCC
Confidence            99998875  456788999999999999999999999999999999964321               122222  13778


Q ss_pred             ceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-----EE--EEecCCcccCcCEEEEEEcCCC-CEEEEEeCCcEEEEEe
Q psy8448         282 AVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ-----IV--RSLSSGKREGGDFLCCTTSPRG-EWIYCVGEDMVLVVRL  353 (482)
Q Consensus       282 ~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~--~~~~~~~~~~~~v~~~~~~~~g-~~l~~~~~dg~i~iw~  353 (482)
                      .|.+++|+|++ ..+++++.|+.|++|+....     ..  ........|...|.+++|+|++ .+|++|+.||.|++|+
T Consensus       254 ~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~  332 (345)
T 3fm0_A          254 TIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK  332 (345)
T ss_dssp             CEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             cEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence            99999999998 78999999999999998421     11  1111123357899999999998 5999999999999777


Q ss_pred             ehh
Q psy8448         354 IQQ  356 (482)
Q Consensus       354 ~~~  356 (482)
                      ...
T Consensus       333 ~~~  335 (345)
T 3fm0_A          333 YQR  335 (345)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.4e-38  Score=300.68  Aligned_cols=279  Identities=19%  Similarity=0.292  Sum_probs=236.6

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA  180 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~  180 (482)
                      -.++.|+||++ ++||+|. |++|+|||+.+++....+..+      +|...|++++|+|+|++|++|+.||.|++||+.
T Consensus       106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~------~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~  177 (420)
T 4gga_A          106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ  177 (420)
T ss_dssp             TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence            34678999975 5788776 899999999999887666544      356789999999999999999999999999999


Q ss_pred             CCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcE
Q psy8448         181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV  259 (482)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i  259 (482)
                      +++.+..+ .+|...+.+++++  +..+++|+.|+.+++||.+.. ..+..+.+|...+..+.++|+++++++++.|+.+
T Consensus       178 ~~~~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v  254 (420)
T 4gga_A          178 QQKRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV  254 (420)
T ss_dssp             TTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCcEEEEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccc
Confidence            99999988 6899999988875  679999999999999999865 4567788999999999999999999999999999


Q ss_pred             EEEECCCCceee-eeeccCCCccceeEEEEcCCCCCEEEEE--eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcC
Q psy8448         260 KMWNLKTTECTS-TFKSLGASDIAVNSIHLLPKNTEHFVVC--NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       260 ~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~  335 (482)
                      ++||..+++... .+.....+...|.+++|+|.+..+++++  +.|+.|++||+ +++....+..    ...+.++.|+|
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~  330 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSP  330 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEEET
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeeecC
Confidence            999998875321 1222237888999999999987888765  47899999999 5777776664    45789999999


Q ss_pred             CCCEEEEEe--CCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhh
Q psy8448         336 RGEWIYCVG--EDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKL  413 (482)
Q Consensus       336 ~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  413 (482)
                      +++.+++++  .|+.|+                  +|+..++                               +.     
T Consensus       331 ~~~~lv~~sg~~d~~I~------------------iwd~~~~-------------------------------~~-----  356 (420)
T 4gga_A          331 HYKELISGHGFAQNQLV------------------IWKYPTM-------------------------------AK-----  356 (420)
T ss_dssp             TTTEEEEEECTTTCCEE------------------EEETTTC-------------------------------CE-----
T ss_pred             CCCeEEEEEecCCCEEE------------------EEECCCC-------------------------------cE-----
Confidence            999998765  789999                  5666555                               22     


Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         414 IDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                              +.          .+.+|.+.|++++|+|||++||||+.||+|+||
T Consensus       357 ------------------------v~----------~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW  391 (420)
T 4gga_A          357 ------------------------VA----------ELKGHTSRVLSLTMSPDGATVASAAADETLRLW  391 (420)
T ss_dssp             ------------------------EE----------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             ------------------------EE----------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence                                    33          677999999999999999999999999999999

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-38  Score=288.50  Aligned_cols=276  Identities=19%  Similarity=0.324  Sum_probs=235.7

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      ..+.+|.+.|++++| |++++|++|+.||.|++||+.+++....+.        .|...|.+++|+|++++|++++.||.
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~   82 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY--------TGQGFLNSVCYDSEKELLLFGGKDTM   82 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE--------ECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee--------cCCccEEEEEECCCCCEEEEecCCCe
Confidence            445699999999999 999999999999999999998876655443        34789999999999999999999999


Q ss_pred             EEEEEcCCC---eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcC-CCCE
Q psy8448         174 VKIWKIATG---QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-DGHS  249 (482)
Q Consensus       174 i~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~-~~~~  249 (482)
                      |++|++...   +....+ ..|...|.+++|  ++.++++++.|+.|++||  .++....+..|...+.+++|.| +++.
T Consensus        83 i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK  157 (313)
T ss_dssp             EEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred             EEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence            999998654   445566 679999999999  577999999999999999  6778888899999999999998 8999


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCE
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDF  328 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v  328 (482)
                      +++++.||.|++||  ..+....+..  .+...+.+++|+|++ . +++++.|+.|++||+ +++.+..+..+   ...+
T Consensus       158 l~~~~~d~~i~i~d--~~~~~~~~~~--~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i  228 (313)
T 3odt_A          158 FLTASADKTIKLWQ--NDKVIKTFSG--IHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLRTYEGH---ESFV  228 (313)
T ss_dssp             EEEEETTSCEEEEE--TTEEEEEECS--SCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCEEEEEECC---SSCE
T ss_pred             EEEEECCCCEEEEe--cCceEEEEec--cCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhhhhhhhcC---CceE
Confidence            99999999999999  3445555542  378899999999998 4 999999999999999 57788777655   7889


Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCC
Q psy8448         329 LCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKL  408 (482)
Q Consensus       329 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  408 (482)
                      .+++|+|++ .|++++.||.|+                  +|+..++                               ++
T Consensus       229 ~~~~~~~~~-~l~~~~~dg~v~------------------iwd~~~~-------------------------------~~  258 (313)
T 3odt_A          229 YCIKLLPNG-DIVSCGEDRTVR------------------IWSKENG-------------------------------SL  258 (313)
T ss_dssp             EEEEECTTS-CEEEEETTSEEE------------------EECTTTC-------------------------------CE
T ss_pred             EEEEEecCC-CEEEEecCCEEE------------------EEECCCC-------------------------------ce
Confidence            999999999 588999999999                  5555555                               22


Q ss_pred             CchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         409 PEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                   ..          .+..|...|.+++|+|+++ +++++.||.|++|
T Consensus       259 -----------------------------~~----------~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw  292 (313)
T 3odt_A          259 -----------------------------KQ----------VITLPAISIWSVDCMSNGD-IIVGSSDNLVRIF  292 (313)
T ss_dssp             -----------------------------EE----------EEECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred             -----------------------------eE----------EEeccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence                                         22          5667888999999999998 6678999999998

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-40  Score=311.46  Aligned_cols=242  Identities=9%  Similarity=0.066  Sum_probs=194.8

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCC--ceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTG--KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      .|.++|++++|+|++++||+|+.|+.|++||+.++  +...        .+.+|...|.+++|+|++++|++++.|+.|+
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~--------~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~   80 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR--------TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY   80 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC--------CBCCCSSCEEEEEECTTTCCEEEEETTSSEE
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE--------EEecCCceEEEEEEeCCCCEEEEEeCCCeEE
Confidence            46789999999999999999999999999999877  3333        3345789999999999999999999999999


Q ss_pred             EEEcCCCe---EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc---eEEEeec-cccceeEEEEcCCCC
Q psy8448         176 IWKIATGQ---CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK---MLKEFRG-HSSFVNDITFTADGH  248 (482)
Q Consensus       176 iwd~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~i~~l~~~~~~~  248 (482)
                      +||+.+++   ....+ ..|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+++|+|+++
T Consensus        81 vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           81 VYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             EC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred             EEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence            99998877   45555 5799999999999999999999999999999999887   3677777 999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCc---------------eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-C
Q psy8448         249 SVLSASSDGTVKMWNLKTTE---------------CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-G  312 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~  312 (482)
                      +|++++.|+.|++||++..+               ........ .|...|.+++|+|++ .++++++.|+.|++||+. +
T Consensus       160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECST
T ss_pred             EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCC
Confidence            99999999999999986322               11122222 788899999999998 799999999999999994 4


Q ss_pred             cE----EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         313 QI----VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       313 ~~----~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      +.    +..+..   +...|.+++|+|++++|++++.++.+ +|+.
T Consensus       238 ~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          238 EQPPRALITVKL---SQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             TSCEEECCCEEC---SSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             CCcceeeEeecC---CCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            44    333433   47789999999999999999887777 4443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-40  Score=313.58  Aligned_cols=288  Identities=14%  Similarity=0.258  Sum_probs=239.7

Q ss_pred             CCCCcEEEEEEcCCCC-EEEEE----------eCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE
Q psy8448          98 GSKSHVECARFSPDGQ-YLITG----------SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA  166 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~-~l~s~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  166 (482)
                      .+...|.+++|+|+++ +|++|          +.|+.|+|||+.+++......      ...|...|++++|+|++++|+
T Consensus        10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~   83 (416)
T 2pm9_A           10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA------SLQVDSKFNDLDWSHNNKIIA   83 (416)
T ss_dssp             CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC------CCCCSSCEEEEEECSSSSCEE
T ss_pred             hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE------EEecCCceEEEEECCCCCeEE
Confidence            3456789999999987 99999          889999999998876331111      113578999999999999999


Q ss_pred             EEeCCCcEEEEEcCC----CeEeEEeecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCc------eEE---Eee
Q psy8448         167 SGSQSGKVKIWKIAT----GQCLRKLEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGK------MLK---EFR  232 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~---~~~  232 (482)
                      +++.||.|++||+.+    .+....+ ..|...|.+++|+|+ +.+|++++.|+.|++||+++++      ...   .+.
T Consensus        84 ~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  162 (416)
T 2pm9_A           84 GALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM  162 (416)
T ss_dssp             EEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred             EEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc
Confidence            999999999999987    3466666 689999999999998 8999999999999999999886      333   236


Q ss_pred             ccccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeccC---CCccceeEEEEcCCCCCEEEEEeCCC---eE
Q psy8448         233 GHSSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCNKTN---TV  305 (482)
Q Consensus       233 ~~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~---~i  305 (482)
                      .|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+....   +|...+.+++|+|++..++++++.|+   .|
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i  242 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI  242 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence            78999999999998 7899999999999999999998887776321   12788999999999878999999998   99


Q ss_pred             EEEEcC-C-cEEEEecCCcccCcCEEEEEEcC-CCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccc
Q psy8448         306 VIMNMQ-G-QIVRSLSSGKREGGDFLCCTTSP-RGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVD  382 (482)
Q Consensus       306 ~i~d~~-~-~~~~~~~~~~~~~~~v~~~~~~~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (482)
                      ++||++ + ..+..+..  .|...|.+++|+| ++++|++++.||.|+                  +|+..++       
T Consensus       243 ~~~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~dg~v~------------------~wd~~~~-------  295 (416)
T 2pm9_A          243 LIWDLRNANTPLQTLNQ--GHQKGILSLDWCHQDEHLLLSSGRDNTVL------------------LWNPESA-------  295 (416)
T ss_dssp             CEEETTSTTSCSBCCCS--CCSSCEEEEEECSSCSSCEEEEESSSEEE------------------EECSSSC-------
T ss_pred             EEEeCCCCCCCcEEeec--CccCceeEEEeCCCCCCeEEEEeCCCCEE------------------EeeCCCC-------
Confidence            999995 3 44444441  2378899999999 999999999999999                  5555555       


Q ss_pred             ccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeecc
Q psy8448         383 SVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLT  462 (482)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  462 (482)
                                              +.                             ..          .+.+|...|++++
T Consensus       296 ------------------------~~-----------------------------~~----------~~~~~~~~v~~~~  312 (416)
T 2pm9_A          296 ------------------------EQ-----------------------------LS----------QFPARGNWCFKTK  312 (416)
T ss_dssp             ------------------------CE-----------------------------EE----------EEECSSSCCCCEE
T ss_pred             ------------------------cc-----------------------------ce----------eecCCCCceEEEE
Confidence                                    22                             22          6678999999999


Q ss_pred             ccCCc-ceEEEEecCceeecC
Q psy8448         463 HHPHQ-NLLGTYSEDGLLRFS  482 (482)
Q Consensus       463 ~sp~~-~~l~s~~~Dg~i~iW  482 (482)
                      |+|++ ++|++++.||.|++|
T Consensus       313 ~s~~~~~~l~s~~~d~~i~iw  333 (416)
T 2pm9_A          313 FAPEAPDLFACASFDNKIEVQ  333 (416)
T ss_dssp             ECTTCTTEEEECCSSSEEEEE
T ss_pred             ECCCCCCEEEEEecCCcEEEE
Confidence            99999 899999999999998

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-39  Score=304.43  Aligned_cols=286  Identities=13%  Similarity=0.209  Sum_probs=237.4

Q ss_pred             CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEec----CCCce------eecccc--ccccccccccccEEEEEEcCCCCE
Q psy8448          98 GSKSHVECARFSPDGQ-YLITGSVDGFIEVWNF----TTGKI------RKDLKY--QAQDNFMLMEEAVMSLAYSRDSEM  164 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~----~~~~~------~~~~~~--~~~~~~~~h~~~i~~l~~~~~~~~  164 (482)
                      .|.+.|++++|+|+++ +||+|+.||.|++|++    .+++.      ...+..  .......+|...|++++|+|++++
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            5678999999999999 9999999999999999    87772      222221  111122336789999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccc-------
Q psy8448         165 LASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSF-------  237 (482)
Q Consensus       165 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------  237 (482)
                      |++++.||.|++|| .+++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+...       
T Consensus       123 l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  200 (425)
T 1r5m_A          123 IVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE  200 (425)
T ss_dssp             EEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred             EEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence            99999999999999 677777777 689999999999999999999999999999999999999888877776       


Q ss_pred             --------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         238 --------VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       238 --------i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                              +.+++|+|++ .+++++.+|.|++||+++++....+.   .|...|.+++|+|++ .++++++.|+.|++||
T Consensus       201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d  275 (425)
T 1r5m_A          201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI---GHHGPISVLEFNDTN-KLLLSASDDGTLRIWH  275 (425)
T ss_dssp             -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC---CCSSCEEEEEEETTT-TEEEEEETTSCEEEEC
T ss_pred             cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec---cCCCceEEEEECCCC-CEEEEEcCCCEEEEEE
Confidence                    9999999975 58899999999999999988877776   788999999999998 7999999999999999


Q ss_pred             c-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccce
Q psy8448         310 M-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFI  388 (482)
Q Consensus       310 ~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (482)
                      + .++.+..+..+   ...+.+++|+|++ ++++++.||.|+                  +|+..++             
T Consensus       276 ~~~~~~~~~~~~~---~~~i~~~~~~~~~-~l~~~~~d~~i~------------------i~d~~~~-------------  320 (425)
T 1r5m_A          276 GGNGNSQNCFYGH---SQSIVSASWVGDD-KVISCSMDGSVR------------------LWSLKQN-------------  320 (425)
T ss_dssp             SSSBSCSEEECCC---SSCEEEEEEETTT-EEEEEETTSEEE------------------EEETTTT-------------
T ss_pred             CCCCccceEecCC---CccEEEEEECCCC-EEEEEeCCCcEE------------------EEECCCC-------------
Confidence            9 45666666544   7789999999999 999999999999                  5555444             


Q ss_pred             eccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcc
Q psy8448         389 ADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQN  468 (482)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  468 (482)
                                        +.                             ..          .+..|...|.+++|+|+++
T Consensus       321 ------------------~~-----------------------------~~----------~~~~~~~~i~~~~~s~~~~  343 (425)
T 1r5m_A          321 ------------------TL-----------------------------LA----------LSIVDGVPIFAGRISQDGQ  343 (425)
T ss_dssp             ------------------EE-----------------------------EE----------EEECTTCCEEEEEECTTSS
T ss_pred             ------------------cE-----------------------------eE----------ecccCCccEEEEEEcCCCC
Confidence                              11                             22          5567888999999999999


Q ss_pred             eEEEEecCceeecC
Q psy8448         469 LLGTYSEDGLLRFS  482 (482)
Q Consensus       469 ~l~s~~~Dg~i~iW  482 (482)
                      +|++++.||.|++|
T Consensus       344 ~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          344 KYAVAFMDGQVNVY  357 (425)
T ss_dssp             EEEEEETTSCEEEE
T ss_pred             EEEEEECCCeEEEE
Confidence            99999999999998

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-39  Score=303.24  Aligned_cols=290  Identities=12%  Similarity=0.118  Sum_probs=217.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCC-------eEEEEecCCCceeecc--ccccccccccccccEEEEEEcCCCCEEEEEe-
Q psy8448         100 KSHVECARFSPDGQYLITGSVDG-------FIEVWNFTTGKIRKDL--KYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-  169 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg-------~v~iwd~~~~~~~~~~--~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-  169 (482)
                      .-||+|++|+||+++|++|+.+.       .|++|++..+......  .......+.+|+..+.+++++  ++.+++|. 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            45899999999999999997543       5999999866543221  112222355677888888765  55666654 


Q ss_pred             ----------CCCcEEEEEcCCCeEeEEee--------cccCCCeEEEEEccCCCEEEEEE--CCCeEEEEeCCCCceEE
Q psy8448         170 ----------QSGKVKIWKIATGQCLRKLE--------KAHSLGVTCIQFSRDNSQILTAS--FDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       170 ----------~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~  229 (482)
                                .|+.+++|++..........        ..+...+.+++|+|||+++++++  .|+.|++||+++++++.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                      46789999986543221110        12345689999999999987654  68999999999999988


Q ss_pred             EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC----eE
Q psy8448         230 EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN----TV  305 (482)
Q Consensus       230 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~----~i  305 (482)
                      .+. |.+.|.+++|+|+|+++++++.+ .+.+|+..+++...... ...|...|.+++|+|++ ..+++++.++    .+
T Consensus       172 ~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i  247 (365)
T 4h5i_A          172 EIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT-DFDKNWSLSKINFIADD-TVLIAASLKKGKGIVL  247 (365)
T ss_dssp             EEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC-CCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEE
T ss_pred             EeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee-cCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEE
Confidence            886 77889999999999999998855 57777777776554322 22678899999999999 7888888776    68


Q ss_pred             EEEEcC-CcE-EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccc
Q psy8448         306 VIMNMQ-GQI-VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDS  383 (482)
Q Consensus       306 ~i~d~~-~~~-~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (482)
                      ++|+.. ... .........+...|++++|+|||++||+|+.|+.|+                  +|++.+++.+     
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~------------------iwd~~~~~~~-----  304 (365)
T 4h5i_A          248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA------------------LVKLKDLSMS-----  304 (365)
T ss_dssp             EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE------------------EEETTTTEEE-----
T ss_pred             eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE------------------EEECCCCcEE-----
Confidence            889884 322 111111222377899999999999999999999999                  6666666111     


Q ss_pred             cccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccc
Q psy8448         384 VDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTH  463 (482)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  463 (482)
                                                                            ..          .+.+|...|++++|
T Consensus       305 ------------------------------------------------------~~----------~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          305 ------------------------------------------------------KI----------FKQAHSFAITEVTI  320 (365)
T ss_dssp             ------------------------------------------------------EE----------ETTSSSSCEEEEEE
T ss_pred             ------------------------------------------------------EE----------ecCcccCCEEEEEE
Confidence                                                                  11          34689999999999


Q ss_pred             cCCcceEEEEecCceeecC
Q psy8448         464 HPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       464 sp~~~~l~s~~~Dg~i~iW  482 (482)
                      ||||++|||||.|++||||
T Consensus       321 Spdg~~laS~S~D~tvrvw  339 (365)
T 4h5i_A          321 SPDSTYVASVSAANTIHII  339 (365)
T ss_dssp             CTTSCEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEE
Confidence            9999999999999999998

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-38  Score=288.57  Aligned_cols=273  Identities=17%  Similarity=0.259  Sum_probs=207.3

Q ss_pred             cCCccccccccccccccccceeeecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFG-SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      .++.+.+|+......  .....+..+ |...|++++|+|++++|++|+.|++|+|||+...... .........+.+|..
T Consensus        32 ~D~~i~lw~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-~~~~~~~~~~~~h~~  108 (330)
T 2hes_X           32 TDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-TFEMDLLAIIEGHEN  108 (330)
T ss_dssp             SSSCEEEEECSSSCC--EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--------CCCEEEEEEC----
T ss_pred             CCCEEEEEEecCCCe--EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-cccceeEEEEcCCCC
Confidence            367788888654321  122223234 9999999999999999999999999999998643210 011122334567899


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC--
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATG----QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG--  225 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--  225 (482)
                      .|.+++|+|++++|++|+.|++|++||+...    +.+..+ ..|...|.+++|+|++.+|++++.|+.|++||.+++  
T Consensus       109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~  187 (330)
T 2hes_X          109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW  187 (330)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe
Confidence            9999999999999999999999999999432    445556 689999999999999999999999999999999876  


Q ss_pred             ceEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCC--------ceeeeeeccCCCccceeEEEEcCCCCCE
Q psy8448         226 KMLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTT--------ECTSTFKSLGASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       226 ~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~v~~i~~~~~~~~~  295 (482)
                      +++..+.+|...|.+++|+|+  +..|++++.|++|++||++.+        .+...+.  ..|...|.+++|+++  .+
T Consensus       188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~s~~--~~  263 (330)
T 2hes_X          188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP--DVHKRQVYNVAWGFN--GL  263 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC--SCCSSCEEEEEECTT--SC
T ss_pred             eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc--cccccceEEEEEcCC--CE
Confidence            678889999999999999998  678999999999999998754        2222222  137889999999975  48


Q ss_pred             EEEEeCCCeEEEEEcC-Cc--EEEEecCCcccCc-CEEEEEEcC--CCCEEEEEeCCcEEEEEeeh
Q psy8448         296 FVVCNKTNTVVIMNMQ-GQ--IVRSLSSGKREGG-DFLCCTTSP--RGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       296 l~~~~~d~~i~i~d~~-~~--~~~~~~~~~~~~~-~v~~~~~~~--~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +++++.|+.|++|+.. +.  .......  .|.. .|.+++|+|  ++++|++|+.||.|++|+++
T Consensus       264 l~s~~~dg~v~iw~~~~~~~~~~~~~~~--~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          264 IASVGADGVLAVYEEVDGEWKVFAKRAL--CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEESC--TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EEEEeCCCEEEEEEcCCCceEEEecccc--ccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence            9999999999999994 42  2222222  2244 899999999  78999999999999987764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-37  Score=291.63  Aligned_cols=240  Identities=29%  Similarity=0.441  Sum_probs=209.4

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      +...|++++|+|+|++|++|+.|+.|++||+.+++....+        .+|...|.+++|+|++++|++++.|++|++||
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd  193 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD  193 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence            3445999999999999999999999999999988765443        34678999999999999999999999999999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEe-------eccccceeEEEEcCCCCEE
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEF-------RGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~l~~~~~~~~l  250 (482)
                      +++++....+.  +...+.+++|+| ++.+|++|+.|+.|++||+++++.+..+       .+|...|.+++|+|++++|
T Consensus       194 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l  271 (393)
T 1erj_A          194 LRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV  271 (393)
T ss_dssp             TTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred             CCCCeeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEE
Confidence            99998877763  667899999999 8999999999999999999999887766       5789999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCc------------eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448         251 LSASSDGTVKMWNLKTTE------------CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS  317 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  317 (482)
                      ++++.|+.|++||+++..            +...+.   +|...|.+++|+|++ .++++++.|+.|++||. .++.+..
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~  347 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI---GHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLM  347 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEE---CCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe---cccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEE
Confidence            999999999999998643            233343   788899999999998 89999999999999999 6777777


Q ss_pred             ecCCcccCcCEEEEEEcC------CCCEEEEEeCCcEEEEEeeh
Q psy8448         318 LSSGKREGGDFLCCTTSP------RGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~------~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +..|   ...|.+++|++      ++++|++|+.||.|++|+++
T Consensus       348 l~~h---~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          348 LQGH---RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             EECC---SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ECCC---CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            7765   77899999876      68899999999999988765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-38  Score=325.14  Aligned_cols=247  Identities=13%  Similarity=0.115  Sum_probs=202.9

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      ....+|...|++++|+|++++||+|+.||+|+||+..+.+....+.         |...|.+++|+| +++|++++.|++
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~---------~~~~V~~l~fsp-g~~L~S~s~D~~   80 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE---------DRSAIKEMRFVK-GIYLVVINAKDT   80 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS---------SCCCEEEEEEET-TTEEEEEETTCE
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC---------CCCCEEEEEEcC-CCEEEEEECcCe
Confidence            3445999999999999999999999999999999988765443221         467899999999 889999999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE-----------EEeeccccceeEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML-----------KEFRGHSSFVNDIT  242 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~i~~l~  242 (482)
                      |++||+.+++.+..+.  |...|++++|+|++++|++|+.||.|++||+++++..           ..+.+|.+.|.+++
T Consensus        81 v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~  158 (902)
T 2oaj_A           81 VYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ  158 (902)
T ss_dssp             EEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred             EEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence            9999999999888873  6688999999999999999999999999999988753           23456889999999


Q ss_pred             EcCC-CCEEEEEeCCCcEEEEECCCCceeeeeecc---------------CCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         243 FTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSL---------------GASDIAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       243 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                      |+|+ +..|++++.||.| +||++++++...+...               ..|...|.+++|+|++ .+|++++.|+.|+
T Consensus       159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~  236 (902)
T 2oaj_A          159 WNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLV  236 (902)
T ss_dssp             EETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEE
T ss_pred             EccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEE
Confidence            9996 5789999999999 9999999888777522               1235779999999998 8999999999999


Q ss_pred             EEEc-CCcEEEE--ecC---Cc----------ccCcCEEEEEEc----CCC-CEEEEEeCC-----cEEEEEee
Q psy8448         307 IMNM-QGQIVRS--LSS---GK----------REGGDFLCCTTS----PRG-EWIYCVGED-----MVLVVRLI  354 (482)
Q Consensus       307 i~d~-~~~~~~~--~~~---~~----------~~~~~v~~~~~~----~~g-~~l~~~~~d-----g~i~iw~~  354 (482)
                      +||+ +++.+..  +..   +.          .+...|.+++|+    |++ .+|++|+.|     ..+.+|++
T Consensus       237 lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             EEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            9999 5666543  211   11          124579999995    553 567777665     37878874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-39  Score=303.40  Aligned_cols=285  Identities=18%  Similarity=0.270  Sum_probs=233.0

Q ss_pred             CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448          64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ  141 (482)
Q Consensus        64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  141 (482)
                      .|+|..+..  .++.+.+|+......     .....+|...|.+++|+|++++|++|+.|+.|++||+.+..... -...
T Consensus        75 sp~~~~l~s~s~D~~v~iWd~~~~~~-----~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~-~~~~  148 (380)
T 3iz6_a           75 TPEKNWIVSASQDGRLIVWNALTSQK-----THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD-GNMP  148 (380)
T ss_dssp             CTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC-CSST
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcc-----ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc-CCcc
Confidence            466655544  367788998654332     22334899999999999999999999999999999997643211 1112


Q ss_pred             cccccccccccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEeEEee----cccCCCeEEEEEcc-CCCEEEEEECCC
Q psy8448         142 AQDNFMLMEEAVMSLAYSRD-SEMLASGSQSGKVKIWKIATGQCLRKLE----KAHSLGVTCIQFSR-DNSQILTASFDT  215 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~i~~~~-~~~~l~~~~~dg  215 (482)
                      ....+.+|...|.++.|+|+ +..|++|+.|++|++||+.+++.+..+.    .+|...|.+++|++ ++.+|++|+.|+
T Consensus       149 ~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~  228 (380)
T 3iz6_a          149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT  228 (380)
T ss_dssp             TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS
T ss_pred             ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC
Confidence            23356678999999999996 4579999999999999999998877662    46888999999987 789999999999


Q ss_pred             eEEEEeCC-CCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC----CCccceeEEEEcC
Q psy8448         216 YVRIHGLK-SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----ASDIAVNSIHLLP  290 (482)
Q Consensus       216 ~i~i~d~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~i~~~~  290 (482)
                      .|++||++ ..+.+..+.+|.+.|.+++|+|++++|++++.||+|++||+++++.+..+....    .+...|.+++|+|
T Consensus       229 ~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  308 (380)
T 3iz6_a          229 TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI  308 (380)
T ss_dssp             CEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred             eEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence            99999998 457788899999999999999999999999999999999999998877765321    1223589999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEc-CCcEEEEecCC-cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         291 KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSG-KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       291 ~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~-~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ++ .++++++.||.|++||. .++.+..+... ..|...|.+++|+|+|++|++|+.||.|++|++.
T Consensus       309 ~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          309 SG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             CC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            99 89999999999999999 56666666322 3457899999999999999999999999977654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.3e-38  Score=312.41  Aligned_cols=341  Identities=18%  Similarity=0.276  Sum_probs=266.7

Q ss_pred             CCccccccccccccccccceeeecCCCCc-EEEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeecccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSH-VECARFSP--DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME  150 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~  150 (482)
                      ++.+.+|+......+.... ..+.+|... |++++|+|  ++++|++|+.||.|++||+.+++............+..|.
T Consensus        38 ~~~v~v~~~~~~~~~~~~~-~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~  116 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPV-VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA  116 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSE-EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS
T ss_pred             CCeEEEEECCCCCCccccc-eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc
Confidence            5567788876442222222 334589999 99999999  9999999999999999999765211111112222334567


Q ss_pred             ccEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCC
Q psy8448         151 EAVMSLAYSRDSEMLASGSQS----GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSG  225 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~  225 (482)
                      ..|.+++|+|++++|++++.+    +.|.+||  .++.+..+ ..|...|.+++|+|+++ .+++++.|+.|++||++++
T Consensus       117 ~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~  193 (615)
T 1pgu_A          117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF  193 (615)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred             ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc
Confidence            899999999999999999987    6888887  56677777 68999999999999997 8999999999999999999


Q ss_pred             ceEEEeecccc---ceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeee-eccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448         226 KMLKEFRGHSS---FVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTF-KSLGASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       226 ~~~~~~~~~~~---~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      +.+..+.+|..   .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .....|...|.+++|+ ++ .++++++
T Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~  271 (615)
T 1pgu_A          194 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVG  271 (615)
T ss_dssp             EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEE
T ss_pred             ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-CEEEEEc
Confidence            99999999999   9999999999 999999999999999999999887776 2212577899999999 66 8999999


Q ss_pred             CCCeEEEEEc-CCcEEEEecCC-cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeeccccee
Q psy8448         301 KTNTVVIMNM-QGQIVRSLSSG-KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSL  378 (482)
Q Consensus       301 ~d~~i~i~d~-~~~~~~~~~~~-~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (482)
                      .|+.|++||+ +++.+..+..+ ......+.++.|. +++++++++.||.|++|++                  .++..+
T Consensus       272 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~------------------~~~~~~  332 (615)
T 1pgu_A          272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL------------------GHDEVL  332 (615)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET------------------TEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC------------------CCCcEE
Confidence            9999999999 57777777654 2234677888886 8999999999999996654                  444444


Q ss_pred             ecccccccceec-----cCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCccee
Q psy8448         379 NTVDSVDGFIAD-----INNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEV  453 (482)
Q Consensus       379 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (482)
                      ..+..+.+.+..     ++.++.++.++.|+..                                        ++ . .+
T Consensus       333 ~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~----------------------------------------~~-~-~~  370 (615)
T 1pgu_A          333 KTISGHNKGITALTVNPLISGSYDGRIMEWSSS----------------------------------------SM-H-QD  370 (615)
T ss_dssp             EEECCCSSCEEEEETTTTEEEETTSCEEETTTT----------------------------------------EE-E-CC
T ss_pred             EEEeCCCCCEEEEEecCcEEECCCCeEEEEEch----------------------------------------hh-c-Cc
Confidence            444444444443     4444455555444221                                        11 3 68


Q ss_pred             cccceeeccccCCcceEEEEecCceeecC
Q psy8448         454 HEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       454 h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      |...|.+++| ++++.|++++.||.|++|
T Consensus       371 ~~~~v~~~~~-~~~~~l~~~~~d~~i~~~  398 (615)
T 1pgu_A          371 HSNLIVSLDN-SKAQEYSSISWDDTLKVN  398 (615)
T ss_dssp             CCSCEEEEEC-CSTTCCEEEETTTEEEET
T ss_pred             ccCceEEEEE-CCCcEEEEEeCCCCEEEE
Confidence            9999999999 667899999999999998

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=283.55  Aligned_cols=277  Identities=19%  Similarity=0.293  Sum_probs=229.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG  182 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  182 (482)
                      .++|+||+++ +||+|. |++|+|||+.+++....+..+      +|...|++++|+|++++|++|+.||.|++||++++
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~------~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ   99 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence            5789999986 777765 999999999999987766544      35788999999999999999999999999999999


Q ss_pred             eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEE
Q psy8448         183 QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM  261 (482)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i  261 (482)
                      +.+..+ .+|...+.++.+  ++..+++++.++.+++|+.... ..+..+.+|...+..+.+.+++++|++++.|+.|++
T Consensus       100 ~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  176 (318)
T 4ggc_A          100 KRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV  176 (318)
T ss_dssp             EEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeE
Confidence            999888 688888877655  5679999999999999998876 456778899999999999999999999999999999


Q ss_pred             EECCCCceeee-eeccCCCccceeEEEEcCCCCCEEE--EEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         262 WNLKTTECTST-FKSLGASDIAVNSIHLLPKNTEHFV--VCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       262 ~d~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~--~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      ||+++++.... ......+...|.++.++|.+...+.  +++.++.|++||.. ........ +   ...+..+.|+|++
T Consensus       177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~---~~~v~~~~~~~~~  252 (318)
T 4ggc_A          177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-A---HSQVCSILWSPHY  252 (318)
T ss_dssp             EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-C---SSCEEEEEEETTT
T ss_pred             EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-c---eeeeeeeeecccc
Confidence            99998754322 1222267788999999999877664  45678999999995 44433333 2   5678999999999


Q ss_pred             CEEEEEe--CCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhh
Q psy8448         338 EWIYCVG--EDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLID  415 (482)
Q Consensus       338 ~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  415 (482)
                      ..+++++  .|+.|+                  +|+..++                               ++       
T Consensus       253 ~~~~~~sg~~d~~i~------------------iwd~~~~-------------------------------~~-------  276 (318)
T 4ggc_A          253 KELISGHGFAQNQLV------------------IWKYPTM-------------------------------AK-------  276 (318)
T ss_dssp             TEEEEEECTTTCCEE------------------EEETTTC-------------------------------CE-------
T ss_pred             cceEEEEEcCCCEEE------------------EEECCCC-------------------------------cE-------
Confidence            9988765  799999                  6666666                               22       


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         416 LYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                            ..          .+.+|.+.|++++|+|||++|||||.||+|+||
T Consensus       277 ----------------------~~----------~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          277 ----------------------VA----------ELKGHTSRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             ----------------------EE----------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             ----------------------EE----------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence                                  33          677999999999999999999999999999999

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.8e-37  Score=278.95  Aligned_cols=270  Identities=25%  Similarity=0.417  Sum_probs=226.3

Q ss_pred             CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      |+|..++.  .++.+.+|+......     .....+|...|.+++|+|++++|++|+.||.|++||+++++....+.   
T Consensus        33 ~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---  104 (312)
T 4ery_A           33 PNGEWLASSSADKLIKIWGAYDGKF-----EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---  104 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCE-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---
T ss_pred             CCCCEEEEeeCCCeEEEEeCCCccc-----chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc---
Confidence            44444433  366788887654332     23345899999999999999999999999999999999887665443   


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeC
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL  222 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~  222 (482)
                           +|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|..+|.+++|+|++++|++++.||.|++||+
T Consensus       105 -----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~  178 (312)
T 4ery_A          105 -----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  178 (312)
T ss_dssp             -----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             -----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence                 35789999999999999999999999999999999988888 688999999999999999999999999999999


Q ss_pred             CCCceEEEee-ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccce--eEEEEcCCCCCEEEEE
Q psy8448         223 KSGKMLKEFR-GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV--NSIHLLPKNTEHFVVC  299 (482)
Q Consensus       223 ~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~l~~~  299 (482)
                      ++++.+..+. .+...+.+++|+|++++|++++.|+.|++||+++++....+.   .|....  ....+++.+..+++++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~sg  255 (312)
T 4ery_A          179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIVSG  255 (312)
T ss_dssp             TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC---SSCCSSSCCCEEEECSSSCEEEEC
T ss_pred             CCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE---ecCCceEEEEEEEEeCCCcEEEEE
Confidence            9998877764 456789999999999999999999999999999998888776   443332  2234454444899999


Q ss_pred             eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe--CCcEEEEEee
Q psy8448         300 NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG--EDMVLVVRLI  354 (482)
Q Consensus       300 ~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~--~dg~i~iw~~  354 (482)
                      +.|+.|++||+ .++.+..+..+   ...|.+++|+|++++|++++  .|+.|++|+.
T Consensus       256 ~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          256 SEDNLVYIWNLQTKEIVQKLQGH---TDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             CTTSCEEEEETTTCCEEEEECCC---SSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             CCCCEEEEEECCCchhhhhhhcc---CCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            99999999999 57777777765   77899999999999999987  6999997764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=293.61  Aligned_cols=298  Identities=17%  Similarity=0.207  Sum_probs=238.8

Q ss_pred             eeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccc-----cccccccccEEEEEEcC-CCCEEE
Q psy8448          94 QIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQ-----DNFMLMEEAVMSLAYSR-DSEMLA  166 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~h~~~i~~l~~~~-~~~~l~  166 (482)
                      .+..+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+.....     ....+|...|.+++|+| ++++|+
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            44558999999999999 999999999999999999998876555432211     12235789999999999 788999


Q ss_pred             EEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccC---CCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEE
Q psy8448         167 SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD---NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITF  243 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~  243 (482)
                      +++.||.|++||+.+++....+.  +...+.++.|+|.   +.++++++.|+.|++||+++++.+..+..|...|.+++|
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~  194 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSW  194 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEE
T ss_pred             EEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEE
Confidence            99999999999999999888874  7788999999984   459999999999999999999999999999999999999


Q ss_pred             cCCCC-EEEEEeCCCcEEEEECCCCc-eeeeee------------ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         244 TADGH-SVLSASSDGTVKMWNLKTTE-CTSTFK------------SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       244 ~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~------------~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                      +|+++ .|++++.||.|++||++++. +...+.            ....|...|.+++|+|++ .++++++.|+.|++||
T Consensus       195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          195 SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred             CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEE
Confidence            99998 58899999999999998765 222221            112678899999999998 8999999999999999


Q ss_pred             cC-CcEEEEecCCc--ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccccccc
Q psy8448         310 MQ-GQIVRSLSSGK--REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDG  386 (482)
Q Consensus       310 ~~-~~~~~~~~~~~--~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (482)
                      +. ++.........  .....+........+..+++++.|+.|+                  +|+..++           
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~------------------v~d~~~~-----------  324 (408)
T 4a11_B          274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIA------------------VYTVYSG-----------  324 (408)
T ss_dssp             TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEE------------------EEETTTC-----------
T ss_pred             CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEE------------------EEECcCC-----------
Confidence            94 44333222111  0112222233334456677788899999                  5666555           


Q ss_pred             ceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCC
Q psy8448         387 FIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPH  466 (482)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  466 (482)
                                          ..                             ..          .+.+|...|++++|+|+
T Consensus       325 --------------------~~-----------------------------~~----------~~~~~~~~v~~~~~s~~  345 (408)
T 4a11_B          325 --------------------EQ-----------------------------IT----------MLKGHYKTVDCCVFQSN  345 (408)
T ss_dssp             --------------------CE-----------------------------EE----------EECCCSSCEEEEEEETT
T ss_pred             --------------------cc-----------------------------ee----------eeccCCCeEEEEEEcCC
Confidence                                22                             22          66789999999999999


Q ss_pred             cceEEEEecCceeecC
Q psy8448         467 QNLLGTYSEDGLLRFS  482 (482)
Q Consensus       467 ~~~l~s~~~Dg~i~iW  482 (482)
                      +++|++|+.||.|++|
T Consensus       346 ~~~l~s~~~dg~i~iw  361 (408)
T 4a11_B          346 FQELYSGSRDCNILAW  361 (408)
T ss_dssp             TTEEEEEETTSCEEEE
T ss_pred             CCEEEEECCCCeEEEE
Confidence            9999999999999998

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-38  Score=327.53  Aligned_cols=212  Identities=13%  Similarity=0.203  Sum_probs=167.4

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      ++.+.+|+......      .....|...|.+++|+| +++|++++.|++|++||+.+++.+..+.         |...|
T Consensus        38 Dg~I~lw~~~~~~~------~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~---------~~~~V  101 (902)
T 2oaj_A           38 TGEVHIYGQQQVEV------VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF---------VPGKI  101 (902)
T ss_dssp             TSEEEEECSTTCEE------EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE---------CSSCE
T ss_pred             CCEEEEEeCCCcEE------EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc---------CCCCE
Confidence            56777887543211      12236888999999999 8899999999999999999988766553         35689


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEE----------eecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeC
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRK----------LEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGL  222 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~  222 (482)
                      ++++|+|++++|++|+.||.|++||+++++....          ...+|...|.+++|+|+ +..+++|+.||.| +||+
T Consensus       102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~  180 (902)
T 2oaj_A          102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL  180 (902)
T ss_dssp             EEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence            9999999999999999999999999998875311          11468889999999996 4789999999999 9999


Q ss_pred             CCCceEEEeecc------------------ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee--eeccCC----
Q psy8448         223 KSGKMLKEFRGH------------------SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTST--FKSLGA----  278 (482)
Q Consensus       223 ~~~~~~~~~~~~------------------~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~----  278 (482)
                      ++++++..+..|                  ...|.+++|+|++++|++++.||.|++||+++++++..  +.....    
T Consensus       181 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~  260 (902)
T 2oaj_A          181 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ  260 (902)
T ss_dssp             TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC
T ss_pred             CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC
Confidence            999988888765                  46799999999999999999999999999999887653  211111    


Q ss_pred             ---------CccceeEEEEcC----CCCCEEEEEeCC
Q psy8448         279 ---------SDIAVNSIHLLP----KNTEHFVVCNKT  302 (482)
Q Consensus       279 ---------~~~~v~~i~~~~----~~~~~l~~~~~d  302 (482)
                               +..+|.+++|++    ++..++++++.+
T Consensus       261 ~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          261 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             TTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             CcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence                     244788888854    332455555443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.5e-38  Score=289.38  Aligned_cols=278  Identities=15%  Similarity=0.201  Sum_probs=233.5

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      |.++|.+++|+|||++++++..++.+.+|.........        ...+|...|++++|+|++++|++++ ||.|++||
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~   78 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI--------NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWD   78 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE--------EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEE
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc--------eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEE
Confidence            56789999999999999988877777666544322111        1224788999999999999999998 99999999


Q ss_pred             cCCCeEeEEee----cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc--eEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         179 IATGQCLRKLE----KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK--MLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       179 ~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      +.+++....+.    ..|...|.+++|+|++++|++++.|+.|++||+++++  ....+..|...|.+++|+|++++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  158 (337)
T 1gxr_A           79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS  158 (337)
T ss_dssp             TTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE
Confidence            98765332221    2688899999999999999999999999999999887  56677889999999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEE
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCC  331 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~  331 (482)
                      ++.||.|++||+++++....+.   .|...+.+++|+|++ ..+++++.|+.|++||++ ++.+..+.    +...+.++
T Consensus       159 ~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~  230 (337)
T 1gxr_A          159 CCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSL  230 (337)
T ss_dssp             EETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEE
T ss_pred             EeCCCcEEEEeCCCCceeeeee---cccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEeeec----CCCceEEE
Confidence            9999999999999998888876   788899999999998 899999999999999994 56555553    26789999


Q ss_pred             EEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCch
Q psy8448         332 TTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEK  411 (482)
Q Consensus       332 ~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  411 (482)
                      +|+|++++|++++.|+.+++|                  +..++                               ..   
T Consensus       231 ~~s~~~~~l~~~~~~~~i~~~------------------~~~~~-------------------------------~~---  258 (337)
T 1gxr_A          231 GYCPTGEWLAVGMESSNVEVL------------------HVNKP-------------------------------DK---  258 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEE------------------ETTSS-------------------------------CE---
T ss_pred             EECCCCCEEEEEcCCCcEEEE------------------ECCCC-------------------------------Ce---
Confidence            999999999999999999954                  44443                               11   


Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         412 KLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                                 .          .+..|...|.+++|+|++++|++++.||.|++|
T Consensus       259 ---------------------------~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  292 (337)
T 1gxr_A          259 ---------------------------Y----------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW  292 (337)
T ss_dssp             ---------------------------E----------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ---------------------------E----------EEcCCccceeEEEECCCCCEEEEecCCCcEEEE
Confidence                                       1          445788899999999999999999999999998

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=298.57  Aligned_cols=252  Identities=13%  Similarity=0.249  Sum_probs=200.0

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceee---cccccccccccccc------------ccEEEEEEcCCC
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRK---DLKYQAQDNFMLME------------EAVMSLAYSRDS  162 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~h~------------~~i~~l~~~~~~  162 (482)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++...   .........+.+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            568899999999999999999999999999998776211   01111223344566            889999999998


Q ss_pred             --CEEEEEeCCCcEEEEEcCCCeEe---------------------------------------EEeecccCCCeEEEEE
Q psy8448         163 --EMLASGSQSGKVKIWKIATGQCL---------------------------------------RKLEKAHSLGVTCIQF  201 (482)
Q Consensus       163 --~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~i~~  201 (482)
                        .+|++++.|+.|++||+.++...                                       ..+..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998764432                                       1333579999999999


Q ss_pred             ccCCCEEEEEECCCeEEEEeCCC-CceEE-------EeeccccceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---
Q psy8448         202 SRDNSQILTASFDTYVRIHGLKS-GKMLK-------EFRGHSSFVNDITFTADG-HSVLSASSDGTVKMWNLKTTEC---  269 (482)
Q Consensus       202 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~i~~l~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---  269 (482)
                      +|++++|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+|++ ++|++++.||.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 799999999984 44444       256799999999999998 9999999999999999999876   


Q ss_pred             -eeeeeccCCCcc------------ceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCc--------
Q psy8448         270 -TSTFKSLGASDI------------AVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGG--------  326 (482)
Q Consensus       270 -~~~~~~~~~~~~------------~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~--------  326 (482)
                       ...+.   .+..            .|.+++|+|++ .++++++. +.|++||++  ++.+..+..+.....        
T Consensus       265 ~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          265 HSKLFE---EPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             TCEEEC---CC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred             eeeEec---cCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence             45554   5554            89999999998 88999988 999999994  666666665432111        


Q ss_pred             ----CEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         327 ----DFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       327 ----~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                          .+..++|+|++++|++|+.||.|++|++.
T Consensus       340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             SGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             cccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence                13459999999999999999999966654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.8e-37  Score=320.18  Aligned_cols=246  Identities=20%  Similarity=0.313  Sum_probs=220.0

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      +.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++....+.        +|..+|++++|+|++++|++++.||.
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~   78 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIVGSDDFR   78 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe--------cCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence            3445899999999999999999999999999999999987766554        35789999999999999999999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcC-CCCEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTA-DGHSVL  251 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~  251 (482)
                      |++||+.+++.+..+ ..|...|.+++|+|++++|++++.||.|++||++++ .....+.+|...|.+++|+| +++.|+
T Consensus        79 i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A           79 IRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (814)
T ss_dssp             EEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence            999999999998888 689999999999999999999999999999999987 66778889999999999999 889999


Q ss_pred             EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC--CCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCE
Q psy8448         252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP--KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDF  328 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v  328 (482)
                      +++.||.|++||+++++....+..  .+...+..++|+|  ++ .++++++.|+.|++||+ .++.+..+..+   ...|
T Consensus       158 ~~~~dg~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~v  231 (814)
T 3mkq_A          158 SGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGH---MSNV  231 (814)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEEC--CCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECC---SSCE
T ss_pred             EEeCCCeEEEEECCCCcceeEEec--CCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCC---CCCE
Confidence            999999999999998877666652  4448899999999  77 79999999999999999 57777777654   6789


Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         329 LCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       329 ~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      .+++|+|++++|++++.||.|++|++
T Consensus       232 ~~~~~~~~~~~l~~~~~dg~v~vwd~  257 (814)
T 3mkq_A          232 SFAVFHPTLPIIISGSEDGTLKIWNS  257 (814)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            99999999999999999999995443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-36  Score=281.05  Aligned_cols=273  Identities=18%  Similarity=0.278  Sum_probs=215.6

Q ss_pred             CCceeec--cCCccccccccccccc--cccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448          66 PGTTIDL--FRGKAAMKDQEEEKYP--TQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ  141 (482)
Q Consensus        66 ~g~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  141 (482)
                      ++..+..  .++.+.+|+.......  .......+.+|...|++++|+|++.+|++|+.|++|++||+++++....+   
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~---  114 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF---  114 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE---
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE---
Confidence            4444443  3567889987644322  11223455699999999999999999999999999999999988765544   


Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee--cccCCCeEEEEEccCC----------CEEE
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE--KAHSLGVTCIQFSRDN----------SQIL  209 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~----------~~l~  209 (482)
                           .+|...|.+++|+|++++|++++.|+.|++||+... ......  ..|...|.+++|+|++          .+|+
T Consensus       115 -----~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~  188 (343)
T 2xzm_R          115 -----VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA  188 (343)
T ss_dssp             -----ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred             -----cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence                 346889999999999999999999999999999743 333321  2688899999999986          7899


Q ss_pred             EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeeeeccCCCccceeEEEE
Q psy8448         210 TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT-ECTSTFKSLGASDIAVNSIHL  288 (482)
Q Consensus       210 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~  288 (482)
                      +++.|+.|++|| ...+....+.+|...|.+++|+|++++|++++.||.|++||+.+. .....+    .+...|.+++|
T Consensus       189 s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~  263 (343)
T 2xzm_R          189 SVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF----DAGSTINQIAF  263 (343)
T ss_dssp             EEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE----ECSSCEEEEEE
T ss_pred             EEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee----cCCCcEEEEEE
Confidence            999999999999 456777888999999999999999999999999999999999543 333333    34557999999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEEcC-CcEE--EEecCC--------cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         289 LPKNTEHFVVCNKTNTVVIMNMQ-GQIV--RSLSSG--------KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       289 ~~~~~~~l~~~~~d~~i~i~d~~-~~~~--~~~~~~--------~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      +|++ .+++ ++.|+.|++|++. ++..  ..+...        ..+...+.+++|+|+|++|++|+.||.|++|++
T Consensus       264 sp~~-~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          264 NPKL-QWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             CSSS-CEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             CCCC-CEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence            9997 5555 5568889999993 3322  233311        134678999999999999999999999996654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.7e-38  Score=288.26  Aligned_cols=254  Identities=17%  Similarity=0.172  Sum_probs=201.6

Q ss_pred             ceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEe
Q psy8448          92 SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGS  169 (482)
Q Consensus        92 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~  169 (482)
                      .+.++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++...      ...+.+|...|.+++|+|  ++++|++|+
T Consensus         5 ~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~------~~~l~gH~~~V~~v~~~~~~~~~~l~s~s   78 (316)
T 3bg1_A            5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL------IADLRGHEGPVWQVAWAHPMYGNILASCS   78 (316)
T ss_dssp             ---------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE------EEEEECCSSCEEEEEECCGGGSSCEEEEE
T ss_pred             eeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE------EEEEcCCCccEEEEEeCCCCCCCEEEEEE
Confidence            344566999999999999999999999999999999998764321      123456889999999986  489999999


Q ss_pred             CCCcEEEEEcCCCe--EeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCce---EEEeeccccceeEEE
Q psy8448         170 QSGKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGKM---LKEFRGHSSFVNDIT  242 (482)
Q Consensus       170 ~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~l~  242 (482)
                      .|++|++||+++++  ....+ .+|...|.+++|+|+  +.+|++|+.|+.|++||++.+..   ...+.+|...|.+++
T Consensus        79 ~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (316)
T 3bg1_A           79 YDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS  157 (316)
T ss_dssp             TTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred             CCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence            99999999998874  44555 679999999999997  78999999999999999987632   345568999999999


Q ss_pred             EcCC-----------------CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC---CCEEEEEeCC
Q psy8448         243 FTAD-----------------GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN---TEHFVVCNKT  302 (482)
Q Consensus       243 ~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~~l~~~~~d  302 (482)
                      |+|+                 +++|++++.|+.|++||++..........+.+|...|.+++|+|++   ..+|++++.|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence            9997                 4689999999999999997653222222333899999999999985   3689999999


Q ss_pred             CeEEEEEcCC----c-EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         303 NTVVIMNMQG----Q-IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       303 ~~i~i~d~~~----~-~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ++|++|++..    . ....+..   +...|.+++|+|+|++|++++.|+.|++|+..
T Consensus       238 ~~v~iw~~~~~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          238 GRVFIWTCDDASSNTWSPKLLHK---FNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CEEEEEECSSTTCCCCBCCEEEE---CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CeEEEEEccCccccchhhhhhhc---CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999999843    1 1112222   36789999999999999999999999977653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-37  Score=287.67  Aligned_cols=245  Identities=14%  Similarity=0.237  Sum_probs=204.2

Q ss_pred             eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC-EEEEEeCCCc
Q psy8448          95 IKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE-MLASGSQSGK  173 (482)
Q Consensus        95 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~~~~~dg~  173 (482)
                      +..+|.+.|++++|+|++++|++++.||.|++|++.+++.....     ....+|...|++++|+|+++ +|++++.||.
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   80 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-----LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-----EEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc-----eeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence            34589999999999999999999999999999999877621111     12224688999999999999 9999999999


Q ss_pred             EEEEEc-CCCeEeEEeecc--cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC---------CceEEEeeccccceeEE
Q psy8448         174 VKIWKI-ATGQCLRKLEKA--HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS---------GKMLKEFRGHSSFVNDI  241 (482)
Q Consensus       174 i~iwd~-~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~l  241 (482)
                      |++||+ .+++. ..+ ..  |...|.+++|+| +.+|++++.|+.|++||+++         ++++..+. |...|.++
T Consensus        81 i~~wd~~~~~~~-~~~-~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  156 (342)
T 1yfq_A           81 ILKVDLIGSPSF-QAL-TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM  156 (342)
T ss_dssp             EEEECSSSSSSE-EEC-BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred             EEEEEeccCCce-Eec-cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence            999999 77765 444 56  999999999999 99999999999999999987         77676666 88999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcC-CCCCEEEEEeCCCeEEEEEcC-C------
Q psy8448         242 TFTADGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLP-KNTEHFVVCNKTNTVVIMNMQ-G------  312 (482)
Q Consensus       242 ~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~d~~i~i~d~~-~------  312 (482)
                      +|+|++  +++++.|+.|++||+++ +....... ...+...+.+++|+| ++ .++++++.||.|++|+++ .      
T Consensus       157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~  232 (342)
T 1yfq_A          157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EECSSE--EEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             EecCCc--EEEEeCCCeEEEEECCccccccceee-ecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCccccc
Confidence            999887  99999999999999998 55322111 116778999999999 88 899999999999999993 3      


Q ss_pred             cEEEEecCCcc------cCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         313 QIVRSLSSGKR------EGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       313 ~~~~~~~~~~~------~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      +....+..+..      +...|.+++|+|++++|++++.||.|++|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence            55556655421      24489999999999999999999999944

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.9e-37  Score=276.07  Aligned_cols=247  Identities=19%  Similarity=0.214  Sum_probs=202.4

Q ss_pred             cccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--eEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEe
Q psy8448         146 FMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG--QCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHG  221 (482)
Q Consensus       146 ~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d  221 (482)
                      +.+|.+.|++++|+|++++|++|+.|++|++||+...  +.+..+ .+|..+|.+++|++  ++++|++|+.|+.|++||
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            4568899999999999999999999999999999743  556677 68999999999986  488999999999999999


Q ss_pred             CCCCc--eEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCce--eeeeeccCCCccceeEEEEcCCC---
Q psy8448         222 LKSGK--MLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTEC--TSTFKSLGASDIAVNSIHLLPKN---  292 (482)
Q Consensus       222 ~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~---  292 (482)
                      +++++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+.   .|...|.+++|+|++   
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID---AHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE---CCSSCEEEEEECCCC---
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee---cccCccceEeecCCcccc
Confidence            98874  56677889999999999997  88999999999999999987642  23333   788899999999973   


Q ss_pred             ---------CCEEEEEeCCCeEEEEEc-CCc----EEEEecCCcccCcCEEEEEEcCCC---CEEEEEeCCcEEEEEeeh
Q psy8448         293 ---------TEHFVVCNKTNTVVIMNM-QGQ----IVRSLSSGKREGGDFLCCTTSPRG---EWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       293 ---------~~~l~~~~~d~~i~i~d~-~~~----~~~~~~~~~~~~~~v~~~~~~~~g---~~l~~~~~dg~i~iw~~~  355 (482)
                               ..+|++++.|+.|++||+ .+.    ....+..|   ...|.+++|+|++   .+|++++.|+.|++|+++
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H---~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC---CCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                     368999999999999999 343    34455443   7899999999995   899999999999966543


Q ss_pred             hhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhh
Q psy8448         356 QYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARS  435 (482)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (482)
                                        ++...         .        .         ..                           
T Consensus       238 ------------------~~~~~---------~--------~---------~~---------------------------  246 (297)
T 2pm7_B          238 ------------------NEQGP---------W--------K---------KT---------------------------  246 (297)
T ss_dssp             ------------------STTSC---------C--------E---------EE---------------------------
T ss_pred             ------------------CCCCc---------c--------c---------ee---------------------------
Confidence                              22000         0        0         00                           


Q ss_pred             hccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         436 LLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                        ..          ....|...|.+++|+|+|++||+++.||+|+||
T Consensus       247 --~~----------~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw  281 (297)
T 2pm7_B          247 --LL----------KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  281 (297)
T ss_dssp             --ES----------SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             --ee----------ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence              00          123677889999999999999999999999998

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.7e-37  Score=286.02  Aligned_cols=297  Identities=13%  Similarity=0.119  Sum_probs=214.0

Q ss_pred             eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeC
Q psy8448          93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQ  170 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~  170 (482)
                      +.++.+|++.|++++|+|++++|++|+.||.|++||+.++.....    ....+.+|...|++++|+|  ++++|++++.
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~   79 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE----LSDSWRAHDSSIVAIDWASPEYGRIIASASY   79 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE----EEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce----ecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence            456679999999999999999999999999999999987643211    1223445789999999999  6999999999


Q ss_pred             CCcEEEEEcCCC---------eEeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCceEEEee-------
Q psy8448         171 SGKVKIWKIATG---------QCLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGKMLKEFR-------  232 (482)
Q Consensus       171 dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------  232 (482)
                      ||.|++||+.++         +....+ ..|...|.+++|+|+  +.+|++++.||.|++||+++++.+..+.       
T Consensus        80 dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           80 DKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             TSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             CCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence            999999999877         445666 679999999999999  9999999999999999999887554332       


Q ss_pred             ------ccccceeEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC---CEEEEEe
Q psy8448         233 ------GHSSFVNDITFTAD---GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT---EHFVVCN  300 (482)
Q Consensus       233 ------~~~~~i~~l~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~~~~  300 (482)
                            .|...+.+++|+|+   +..+++++.++.+.+|+...++.. .......|...|.+++|+|++.   .++++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-VAAKLPGHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-EEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-eeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence                  57788999999997   899999999999988887776542 2222337899999999999974   6899999


Q ss_pred             CCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceee
Q psy8448         301 KTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN  379 (482)
Q Consensus       301 ~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (482)
                      .|+.|++||++ +.........   .........++....+..+..++....+              ..+|+....    
T Consensus       238 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~----  296 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPLASEES---LTNSNMFDNSADVDMDAQGRSDSNTEEK--------------AELQSNLQV----  296 (351)
T ss_dssp             TTSCEEEEEEEECC--------------------------------------------------------CCSEEE----
T ss_pred             CCCeEEEEeCCCCcCccccCCc---ccceeccCCCccccccccccccccccee--------------eeecccccc----
Confidence            99999999994 3322222211   2223334444444444444333322200              002222222    


Q ss_pred             cccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccccee
Q psy8448         380 TVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVI  459 (482)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  459 (482)
                                                                                        .++..+.+|...|+
T Consensus       297 ------------------------------------------------------------------~~~~~~~~h~~~v~  310 (351)
T 3f3f_A          297 ------------------------------------------------------------------ELLSEHDDHNGEVW  310 (351)
T ss_dssp             ------------------------------------------------------------------EEEEEECTTSSCEE
T ss_pred             ------------------------------------------------------------------cEEEEEecccccEE
Confidence                                                                              22226778999999


Q ss_pred             eccccCCcceEEEEecCceeecC
Q psy8448         460 GLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       460 ~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      +++|+|++++|+||+.||.|+||
T Consensus       311 ~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          311 SVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             EEEECSSSCCEEEEETTSCEEEE
T ss_pred             EEEEcCCCCEEEEecCCCcEEEE
Confidence            99999999999999999999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4e-36  Score=287.93  Aligned_cols=297  Identities=22%  Similarity=0.385  Sum_probs=250.9

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++.+.+|+......     .....+|...|.+++|+  +++|++|+.||+|++||+.+++....+.        +|...
T Consensus       137 ~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~h~~~  201 (445)
T 2ovr_B          137 DDNTLKVWSAVTGKC-----LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY--------GHTST  201 (445)
T ss_dssp             TTSCEEEEETTTCCE-----EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSC
T ss_pred             CCCcEEEEECCCCcE-----EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC--------CCCCc
Confidence            466788888654432     22334899999999998  6699999999999999999987665543        46789


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  232 (482)
                      |.+++|+  ++.+++|+.||.|++||+.+++.+..+ ..|...|.+++|  ++.++++++.||.|++||+++++.+..+.
T Consensus       202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (445)
T 2ovr_B          202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ  276 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred             EEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec
Confidence            9999996  568999999999999999999998888 689999999999  68899999999999999999999999999


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C
Q psy8448         233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q  311 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~  311 (482)
                      +|...|.+++|  ++.++++++.||.|++||+++++.+..+.   .|...+.++.+.+   .++++++.||.|++||+ +
T Consensus       277 ~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~  348 (445)
T 2ovr_B          277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELKD---NILVSGNADSTVKIWDIKT  348 (445)
T ss_dssp             CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEEET---TEEEEEETTSCEEEEETTT
T ss_pred             CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc---CCcccEEEEEEeC---CEEEEEeCCCeEEEEECCC
Confidence            99999999999  78899999999999999999999888877   7888888888753   68999999999999999 6


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceecc
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADI  391 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (482)
                      ++.+..+.....+...|.+++|+  +++|++|+.||.|+                  +|+..+++.+..+..        
T Consensus       349 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~------------------iwd~~~~~~~~~~~~--------  400 (445)
T 2ovr_B          349 GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVK------------------LWDLKTGEFIRNLVT--------  400 (445)
T ss_dssp             CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEE------------------EEETTTCCEEEEEEE--------
T ss_pred             CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEE------------------EEECCCCceeeeeec--------
Confidence            88888888765568899999995  67999999999999                  555555522211100        


Q ss_pred             CCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEE
Q psy8448         392 NNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLG  471 (482)
Q Consensus       392 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  471 (482)
                                                                     .          ...+|.+.|++++|+|++.+||
T Consensus       401 -----------------------------------------------~----------~~~~~~~~v~~~~~s~~~~~la  423 (445)
T 2ovr_B          401 -----------------------------------------------L----------ESGGSGGVVWRIRASNTKLVCA  423 (445)
T ss_dssp             -----------------------------------------------C----------TTGGGTCEEEEEEECSSEEEEE
T ss_pred             -----------------------------------------------c----------ccCCCCceEEEEEecCCEEEEE
Confidence                                                           0          1246888999999999999999


Q ss_pred             EEecCce----eecC
Q psy8448         472 TYSEDGL----LRFS  482 (482)
Q Consensus       472 s~~~Dg~----i~iW  482 (482)
                      +|+.||+    |.||
T Consensus       424 ~~~~dg~~~~~l~v~  438 (445)
T 2ovr_B          424 VGSRNGTEETKLLVL  438 (445)
T ss_dssp             EECSSSSSCCEEEEE
T ss_pred             EcccCCCCccEEEEE
Confidence            9999997    7776

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.7e-37  Score=305.39  Aligned_cols=310  Identities=15%  Similarity=0.152  Sum_probs=251.0

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCC----ceeecccccccccccccccc-EEEEEEcC--CCCEEEEEe
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTG----KIRKDLKYQAQDNFMLMEEA-VMSLAYSR--DSEMLASGS  169 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~h~~~-i~~l~~~~--~~~~l~~~~  169 (482)
                      ..|.+.|.+++|+|++++|++++ ++.|++||+.++    +....        +.+|... |++++|+|  ++++|++++
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~--------~~~h~~~~v~~~~~sp~~~~~~l~s~~   85 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ--------FTGHGSSVVTTVKFSPIKGSQYLCSGD   85 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE--------ECTTTTSCEEEEEECSSTTCCEEEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE--------EecCCCceEEEEEECcCCCCCEEEEec
Confidence            37899999999999999999998 789999999977    44333        3456788 99999999  999999999


Q ss_pred             CCCcEEEEEcCCC--------eEeEEeecccCCCeEEEEEccCCCEEEEEECC----CeEEEEeCCCCceEEEeeccccc
Q psy8448         170 QSGKVKIWKIATG--------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFD----TYVRIHGLKSGKMLKEFRGHSSF  237 (482)
Q Consensus       170 ~dg~i~iwd~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~  237 (482)
                      .||.|++||+.++        +....+ ..|...|.+++|+|++++|++++.+    +.|++||  .++.+..+.+|...
T Consensus        86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~  162 (615)
T 1pgu_A           86 ESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR  162 (615)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred             CCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence            9999999999754        555566 5789999999999999999999988    6888888  67788899999999


Q ss_pred             eeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeeeeccCCCcc---ceeEEEEcCC-CCCEEEEEeCCCeEEEEEc-C
Q psy8448         238 VNDITFTADGH-SVLSASSDGTVKMWNLKTTECTSTFKSLGASDI---AVNSIHLLPK-NTEHFVVCNKTNTVVIMNM-Q  311 (482)
Q Consensus       238 i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~~~-~~~~l~~~~~d~~i~i~d~-~  311 (482)
                      |.+++|+|+++ .+++++.|+.|++||+++++....+.   .|..   .|.+++|+|+ + .++++++.|+.|++||+ +
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~  238 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---THHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKS  238 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---SSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTT
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec---ccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCC
Confidence            99999999998 89999999999999999998888877   6777   8999999999 6 89999999999999999 6


Q ss_pred             CcEEEEe-cCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccc----c
Q psy8448         312 GQIVRSL-SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVD----G  386 (482)
Q Consensus       312 ~~~~~~~-~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  386 (482)
                      ++.+..+ .....+...|.+++|+ ++++|++++.||.|++|+++.                  +.....+..+.    .
T Consensus       239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~------------------~~~~~~~~~~~~~~~~  299 (615)
T 1pgu_A          239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT------------------SKCVQKWTLDKQQLGN  299 (615)
T ss_dssp             CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT------------------TEEEEEEECCTTCGGG
T ss_pred             CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC------------------CcEEEEEcCCCCcccC
Confidence            7777777 3111237899999999 999999999999999777652                  22222221110    0


Q ss_pred             --------ceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccce
Q psy8448         387 --------FIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLV  458 (482)
Q Consensus       387 --------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  458 (482)
                              .-..+..+..++.+..|                                     +..++.++..+.+|...|
T Consensus       300 ~~~~~~~~~~~~l~~~~~~g~i~~~-------------------------------------d~~~~~~~~~~~~~~~~v  342 (615)
T 1pgu_A          300 QQVGVVATGNGRIISLSLDGTLNFY-------------------------------------ELGHDEVLKTISGHNKGI  342 (615)
T ss_dssp             CEEEEEEEETTEEEEEETTSCEEEE-------------------------------------ETTEEEEEEEECCCSSCE
T ss_pred             ceeEEEeCCCCeEEEEECCCCEEEE-------------------------------------ECCCCcEEEEEeCCCCCE
Confidence                    00123333344444333                                     223344444788999999


Q ss_pred             eeccccCCcceEEEEecCceeecC
Q psy8448         459 IGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       459 ~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      ++++| |+   |++++.||.|++|
T Consensus       343 ~~~~~-~~---l~~~~~dg~i~~w  362 (615)
T 1pgu_A          343 TALTV-NP---LISGSYDGRIMEW  362 (615)
T ss_dssp             EEEET-TT---TEEEETTSCEEET
T ss_pred             EEEEe-cC---cEEECCCCeEEEE
Confidence            99999 88   9999999999998

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.8e-37  Score=282.76  Aligned_cols=249  Identities=17%  Similarity=0.175  Sum_probs=200.4

Q ss_pred             cccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEe
Q psy8448         146 FMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHG  221 (482)
Q Consensus       146 ~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d  221 (482)
                      +.+|.+.|++++|+|++++|++|+.|++|++||+.++.  .+..+ .+|...|.+++|++  ++.+|++|+.|+.|++||
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            34688999999999999999999999999999998775  34556 68999999999975  488999999999999999


Q ss_pred             CCCC--ceEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC-----
Q psy8448         222 LKSG--KMLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN-----  292 (482)
Q Consensus       222 ~~~~--~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-----  292 (482)
                      ++++  +....+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+...........|...+.+++|+|+.     
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            9887  356678889999999999997  7899999999999999998764332223334788899999999973     


Q ss_pred             -----------CCEEEEEeCCCeEEEEEcC-Cc---EEEEecCCcccCcCEEEEEEcCCC----CEEEEEeCCcEEEEEe
Q psy8448         293 -----------TEHFVVCNKTNTVVIMNMQ-GQ---IVRSLSSGKREGGDFLCCTTSPRG----EWIYCVGEDMVLVVRL  353 (482)
Q Consensus       293 -----------~~~l~~~~~d~~i~i~d~~-~~---~~~~~~~~~~~~~~v~~~~~~~~g----~~l~~~~~dg~i~iw~  353 (482)
                                 ..+|++++.|+.|++||++ +.   .+..+.   .|...|.+++|+|++    ++|++++.|+.|++|+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~---~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE---AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB---CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc---cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                       2689999999999999995 32   334443   347899999999987    8999999999999554


Q ss_pred             ehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhh
Q psy8448         354 IQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAA  433 (482)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  433 (482)
                      +                  .++..        +                    ..                         
T Consensus       245 ~------------------~~~~~--------~--------------------~~-------------------------  253 (316)
T 3bg1_A          245 C------------------DDASS--------N--------------------TW-------------------------  253 (316)
T ss_dssp             C------------------SSTTC--------C--------------------CC-------------------------
T ss_pred             c------------------cCccc--------c--------------------ch-------------------------
Confidence            3                  32100        0                    00                         


Q ss_pred             hhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         434 RSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                         ...          .+..|...|.+++|+|++++||+|+.||+|+||
T Consensus       254 ---~~~----------~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          254 ---SPK----------LLHKFNDVVWHVSWSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             ---BCC----------EEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred             ---hhh----------hhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence               001          345788899999999999999999999999998

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.7e-36  Score=304.02  Aligned_cols=269  Identities=21%  Similarity=0.359  Sum_probs=223.4

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++.+.+|+..............+.+|...|++++|+|++++|++|+.||+|+|||+.+++....+        .+|...
T Consensus       403 ~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~--------~~h~~~  474 (694)
T 3dm0_A          403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF--------VGHTKD  474 (694)
T ss_dssp             TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSC
T ss_pred             CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE--------eCCCCC
Confidence            467789998776554444444556799999999999999999999999999999999988765443        356889


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee--cccCCCeEEEEEccCC--CEEEEEECCCeEEEEeCCCCceE
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE--KAHSLGVTCIQFSRDN--SQILTASFDTYVRIHGLKSGKML  228 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~  228 (482)
                      |.+++|+|++++|++++.|++|++||+..........  .+|...|.+++|+|++  ..+++++.|+.|++||+++++..
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~  554 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR  554 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence            9999999999999999999999999986554333221  3578889999999986  58999999999999999999999


Q ss_pred             EEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448         229 KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM  308 (482)
Q Consensus       229 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~  308 (482)
                      ..+.+|.+.|.+++|+|++++|++++.||.|++||+++++.+..+.    +...+.+++|+|++ .+++++ .++.|++|
T Consensus       555 ~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~-~~l~~~-~~~~i~iw  628 (694)
T 3dm0_A          555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNR-YWLCAA-TEHGIKIW  628 (694)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSS-SEEEEE-ETTEEEEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCC-cEEEEE-cCCCEEEE
Confidence            9999999999999999999999999999999999999998877763    45679999999987 555554 56679999


Q ss_pred             Ec-CCcEEEEecCCcc----------------cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         309 NM-QGQIVRSLSSGKR----------------EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       309 d~-~~~~~~~~~~~~~----------------~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      |+ .+..+..+.....                +...+++++|+|+|++|++|+.||.|++|++.
T Consensus       629 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          629 DLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            99 4555655543211                11247889999999999999999999988875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.4e-36  Score=277.86  Aligned_cols=267  Identities=22%  Similarity=0.391  Sum_probs=227.3

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++.+.+|+..............+.+|...|.+++|+|++++|++|+.|+.|++|+............        +...
T Consensus        59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~--------~~~~  130 (340)
T 4aow_A           59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG--------HTKD  130 (340)
T ss_dssp             TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--------CSSC
T ss_pred             CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecC--------CCCc
Confidence            36789999987766655555566679999999999999999999999999999999988776554433        3567


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC--CEEEEEECCCeEEEEeCCCCceEEE
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN--SQILTASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~  230 (482)
                      +..+.+++++++|++++.|+.+++||+............|...+.+++|++++  ..+++++.|+.|++||+++++.+..
T Consensus       131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  210 (340)
T 4aow_A          131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN  210 (340)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence            88999999999999999999999999987776665557889999999998864  5788999999999999999999999


Q ss_pred             eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                      +.+|.+.|++++|+|++++|++++.||.|++||+++.+.+..+.    +...+.++.|+|++  .+++++.|+.|++||+
T Consensus       211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~  284 (340)
T 4aow_A          211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINALCFSPNR--YWLCAATGPSIKIWDL  284 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CSSCEEEEEECSSS--SEEEEEETTEEEEEET
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec----CCceEEeeecCCCC--ceeeccCCCEEEEEEC
Confidence            99999999999999999999999999999999999999888774    45689999999985  5667778999999999


Q ss_pred             C-CcEEEEecC------CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         311 Q-GQIVRSLSS------GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       311 ~-~~~~~~~~~------~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      + +..+..+..      ...+...|++++|+|+|++|++|+.||.|+||+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          285 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             TTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            5 444444432      123578899999999999999999999999443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-35  Score=286.16  Aligned_cols=238  Identities=22%  Similarity=0.375  Sum_probs=207.2

Q ss_pred             eeecCCCCcE-EEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          94 QIKFGSKSHV-ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        94 ~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      ..+.+|...| .++.+  ++++|++|+.||+|++||+.+++....+.        +|...|++++|+|++ +|++|+.||
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~--------~h~~~V~~l~~~~~~-~l~s~s~dg  183 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS--------GHDGGVWALKYAHGG-ILVSGSTDR  183 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECSTT-EEEEEETTS
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEe--------CCCcCEEEEEEcCCC-EEEEEeCCC
Confidence            3455888875 66666  56799999999999999999988665544        468999999999988 899999999


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEeCCCCce-----------------------
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLKSGKM-----------------------  227 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-----------------------  227 (482)
                      .|++||+++++.+..+ ..|...|.+++|++  ++.++++++.|+.|++||+++++.                       
T Consensus       184 ~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             CEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             CEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence            9999999999998888 68999999999984  778999999999999999987653                       


Q ss_pred             EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEE
Q psy8448         228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI  307 (482)
Q Consensus       228 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i  307 (482)
                      +..+.+|...+.++  +++++++++++.||.|++||+++++++..+.   +|...|.+++|+|++ ..+++++.|+.|++
T Consensus       263 ~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          263 VGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDHER-KRCISASMDTTIRI  336 (464)
T ss_dssp             EEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEETTT-TEEEEEETTSCEEE
T ss_pred             EEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCEEEEEEcCCC-CEEEEEeCCCcEEE
Confidence            44667788888777  5678999999999999999999999888887   788999999999998 89999999999999


Q ss_pred             EEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         308 MNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       308 ~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ||+ +++.+..+..+   ...|.+++|+  +++|++++.||.|++|++
T Consensus       337 wd~~~~~~~~~~~~h---~~~v~~~~~~--~~~l~s~s~dg~v~vwd~  379 (464)
T 3v7d_B          337 WDLENGELMYTLQGH---TALVGLLRLS--DKFLVSAAADGSIRGWDA  379 (464)
T ss_dssp             EETTTTEEEEEECCC---SSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             EECCCCcEEEEEeCC---CCcEEEEEEc--CCEEEEEeCCCcEEEEEC
Confidence            999 68888888765   7789999997  579999999999995543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.1e-36  Score=286.15  Aligned_cols=231  Identities=25%  Similarity=0.403  Sum_probs=204.3

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .+|...|.|+++  ++++|++|+.||.|++||+.+++....+.        +|...|.+++|  ++++|++|+.||.|++
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~l~~--~~~~l~sg~~dg~i~v  197 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT--------GHTGSVLCLQY--DERVIITGSSDSTVRV  197 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC--------CCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--------CCCCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence            367788999887  78999999999999999999887665543        46789999999  7889999999999999


Q ss_pred             EEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE---EEeeccccceeEEEEcCCCCEEEEE
Q psy8448         177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML---KEFRGHSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~l~~~~~~~~l~~~  253 (482)
                      ||+.+++.+..+ ..|...|.+++|+  +..+++|+.||.|++||+++++..   ..+.+|...|.+++|  ++++++++
T Consensus       198 wd~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~  272 (435)
T 1p22_A          198 WDVNTGEMLNTL-IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA  272 (435)
T ss_dssp             EESSSCCEEEEE-CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred             EECCCCcEEEEE-cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence            999999999888 6899999999996  459999999999999999988765   667789999999999  67899999


Q ss_pred             eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEE
Q psy8448         254 SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCT  332 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~  332 (482)
                      +.||.|++||+++++.+..+.   .|...|.++.+.+   .++++++.|+.|++||+ +++.+..+..+   ...|.+++
T Consensus       273 ~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~  343 (435)
T 1p22_A          273 SGDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVRCIR  343 (435)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCC---SSCEEEEE
T ss_pred             eCCCeEEEEECCcCcEEEEEc---CCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCC---cCcEEEEE
Confidence            999999999999999988887   7888999999953   79999999999999999 58888888765   77899999


Q ss_pred             EcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         333 TSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       333 ~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      |  ++.+|++|+.||.|++|++.
T Consensus       344 ~--~~~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          344 F--DNKRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             C--CSSEEEEEETTSCEEEEEHH
T ss_pred             e--cCCEEEEEeCCCcEEEEECC
Confidence            9  78899999999999966543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-35  Score=286.50  Aligned_cols=250  Identities=17%  Similarity=0.258  Sum_probs=212.9

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++.+.+|+......     ...+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++....+.        +|...
T Consensus       140 ~dg~i~vwd~~~~~~-----~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~--------~h~~~  205 (464)
T 3v7d_B          140 DDKMIRVYDSINKKF-----LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE--------GHNST  205 (464)
T ss_dssp             TTSCEEEEETTTTEE-----EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC--------CCSSC
T ss_pred             CCCcEEEEECCCCcE-----EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC--------CCCCc
Confidence            467788888654432     22334899999999999988 99999999999999999987665443        46789


Q ss_pred             EEEEEEc--CCCCEEEEEeCCCcEEEEEcCCCeE-----------------------eEEeecccCCCeEEEEEccCCCE
Q psy8448         153 VMSLAYS--RDSEMLASGSQSGKVKIWKIATGQC-----------------------LRKLEKAHSLGVTCIQFSRDNSQ  207 (482)
Q Consensus       153 i~~l~~~--~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~~v~~i~~~~~~~~  207 (482)
                      |.+++|+  ++++++++++.||.|++||+.++..                       ...+ .+|...+.++  ++++.+
T Consensus       206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~--~~~~~~  282 (464)
T 3v7d_B          206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMASVRTV--SGHGNI  282 (464)
T ss_dssp             EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-CCCSSCEEEE--EEETTE
T ss_pred             cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-cCccceEEEE--cCCCCE
Confidence            9999999  4778999999999999999987653                       2233 5778888877  567899


Q ss_pred             EEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEE
Q psy8448         208 ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIH  287 (482)
Q Consensus       208 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  287 (482)
                      +++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++++..+.   .|...|.++.
T Consensus       283 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~  359 (464)
T 3v7d_B          283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ---GHTALVGLLR  359 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCcEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999888887   8899999999


Q ss_pred             EcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         288 LLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       288 ~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +++   .++++++.||.|++||+. +........    ...+..++|++++++|++|+ ||.|+
T Consensus       360 ~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~-dg~i~  415 (464)
T 3v7d_B          360 LSD---KFLVSAAADGSIRGWDANDYSRKFSYHH----TNLSAITTFYVSDNILVSGS-ENQFN  415 (464)
T ss_dssp             ECS---SEEEEEETTSEEEEEETTTCCEEEEEEC----TTCCCEEEEEECSSEEEEEE-TTEEE
T ss_pred             EcC---CEEEEEeCCCcEEEEECCCCceeeeecC----CCCccEEEEEeCCCEEEEec-CCeEE
Confidence            984   789999999999999994 454444432    45677889999999999998 89999

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.4e-36  Score=280.08  Aligned_cols=287  Identities=13%  Similarity=0.198  Sum_probs=227.5

Q ss_pred             eeecCCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEecCC-CceeeccccccccccccccccEEEEEEcCCCCEEEEEe
Q psy8448          94 QIKFGSKSHVECARFSPD---GQYLITGSVDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS  169 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~  169 (482)
                      .++.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +....       ..+.+|...|++++|+|++++|++++
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-------KAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------EEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------EEeccccCCEEEEEECcCCCEEEEEc
Confidence            455699999999999998   69999999999999999987 43321       12334689999999999999999999


Q ss_pred             CCCcEEEEEcCCCeEeEEeecccCCCeEEEEE--ccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448         170 QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF--SRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      .||.|++||+.+++....  ..|...|.+++|  +|++.+|++++.||.|++||+++++.+..+..+. .+.++.+.  .
T Consensus       106 ~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~  180 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--Y  180 (368)
T ss_dssp             TTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--T
T ss_pred             CCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--C
Confidence            999999999999987764  469999999999  8899999999999999999999999988888654 56666665  4


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC---CEEEEEeCCCeEEEEEcCC----cEEEEecC
Q psy8448         248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT---EHFVVCNKTNTVVIMNMQG----QIVRSLSS  320 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~~~~~d~~i~i~d~~~----~~~~~~~~  320 (482)
                      ..+++++.++.+.+|+++.......... ......+.++.+.+...   ..+++++.|+.|++|+++.    .....+..
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  259 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC  259 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhhcc-ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence            5788999999999999987654332221 13344555666655441   2399999999999999953    34445544


Q ss_pred             Ccc---------cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceecc
Q psy8448         321 GKR---------EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADI  391 (482)
Q Consensus       321 ~~~---------~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (482)
                      +..         +...|.+++|+|++++|++++.||.|+                  +|+..++                
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~------------------iwd~~~~----------------  305 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS------------------FWDKDAR----------------  305 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEE------------------EEETTTT----------------
T ss_pred             eecccccccccccccceEEEEEecCCCEEEEEccCCeEE------------------EEECCCC----------------
Confidence            421         112699999999999999999999999                  5555555                


Q ss_pred             CCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEE
Q psy8448         392 NNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLG  471 (482)
Q Consensus       392 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  471 (482)
                                     ++                             ..          .+.+|...|++++|+|+|++||
T Consensus       306 ---------------~~-----------------------------~~----------~~~~~~~~v~~~~~s~~g~~l~  331 (368)
T 3mmy_A          306 ---------------TK-----------------------------LK----------TSEQLDQPISACCFNHNGNIFA  331 (368)
T ss_dssp             ---------------EE-----------------------------EE----------ECCCCSSCEEEEEECTTSSCEE
T ss_pred             ---------------cE-----------------------------EE----------EecCCCCCceEEEECCCCCeEE
Confidence                           22                             22          5668899999999999999999


Q ss_pred             EEecCceeec
Q psy8448         472 TYSEDGLLRF  481 (482)
Q Consensus       472 s~~~Dg~i~i  481 (482)
                      +|+.|+..+.
T Consensus       332 ~~s~d~~~~~  341 (368)
T 3mmy_A          332 YASSYDWSKG  341 (368)
T ss_dssp             EEECCCSTTC
T ss_pred             EEeccccccc
Confidence            9999886554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1e-35  Score=307.06  Aligned_cols=270  Identities=21%  Similarity=0.310  Sum_probs=226.5

Q ss_pred             CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      |+|..++.  .++.+.+|+......     .....+|..+|++++|+|++++|++|+.||.|++||+.+++....+.   
T Consensus        23 p~~~~la~~~~~g~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~---   94 (814)
T 3mkq_A           23 PTEPWVLTTLYSGRVEIWNYETQVE-----VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE---   94 (814)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEE-----EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE---
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCce-----EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---
Confidence            44444433  266788888654322     22334899999999999999999999999999999999988765553   


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEE
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG-QCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIH  220 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~  220 (482)
                           +|...|++++|+|++++|++++.||.|++||+.++ .....+ ..|...|.+++|+| ++..|++++.||.|++|
T Consensus        95 -----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw  168 (814)
T 3mkq_A           95 -----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW  168 (814)
T ss_dssp             -----CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             -----cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                 35789999999999999999999999999999987 444555 68999999999999 88899999999999999


Q ss_pred             eCCCCceEEEeeccc-cceeEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEE
Q psy8448         221 GLKSGKMLKEFRGHS-SFVNDITFTA--DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFV  297 (482)
Q Consensus       221 d~~~~~~~~~~~~~~-~~i~~l~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~  297 (482)
                      |+++++....+..+. ..+.+++|+|  ++.+|++++.||.|++||+++++....+.   .|...|.+++|+|++ .+++
T Consensus       169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~l~  244 (814)
T 3mkq_A          169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTL-PIII  244 (814)
T ss_dssp             ETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSS-SEEE
T ss_pred             ECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCC-CEEE
Confidence            999888877776555 8899999999  99999999999999999999999888887   788899999999998 7999


Q ss_pred             EEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCE-EEEEeCCcEEEEEeeh
Q psy8448         298 VCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEW-IYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       298 ~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-l~~~~~dg~i~iw~~~  355 (482)
                      +++.||.|++||. +++.+..+..+   ...+.+++|+|+|.. +++.+.++.+.+|++.
T Consensus       245 ~~~~dg~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (814)
T 3mkq_A          245 SGSEDGTLKIWNSSTYKVEKTLNVG---LERSWCIATHPTGRKNYIASGFDNGFTVLSLG  301 (814)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCS---SSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred             EEeCCCeEEEEECCCCcEEEEeecC---CCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence            9999999999999 57777777665   678999999999873 2444446667766654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-36  Score=279.37  Aligned_cols=255  Identities=20%  Similarity=0.229  Sum_probs=212.9

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC--CCEEEEEeCC
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD--SEMLASGSQS  171 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--~~~l~~~~~d  171 (482)
                      .++.+|.+.|++++|+|++++||+|+.||.|+|||+..+...      ....+.+|...|++++|+|+  +++|++++.|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE------EEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce------eeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            345699999999999999999999999999999999743321      12233457899999999987  8999999999


Q ss_pred             CcEEEEEcCCCe--EeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCc--eEEEeeccccceeEEEEcC
Q psy8448         172 GKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGK--MLKEFRGHSSFVNDITFTA  245 (482)
Q Consensus       172 g~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~l~~~~  245 (482)
                      |.|++||+.+++  ....+ ..|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+..|...|.+++|+|
T Consensus        79 g~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred             CEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence            999999999887  55555 678999999999998  9999999999999999998874  4456678999999999999


Q ss_pred             -------------CCCEEEEEeCCCcEEEEECCCCceee-eeeccCCCccceeEEEEcCCC--CCEEEEEeCCCeEEEEE
Q psy8448         246 -------------DGHSVLSASSDGTVKMWNLKTTECTS-TFKSLGASDIAVNSIHLLPKN--TEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       246 -------------~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~i~d  309 (482)
                                   ++.+|++++.||.|++||++++.... .......|...|.+++|+|++  ..++++++.|+.|++||
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                         69999999999999999998765332 222233788999999999993  38999999999999999


Q ss_pred             cCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         310 MQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       310 ~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +...   ....+.....+...+.+++|+|+|++|++++.||.|++|++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            9532   133333333457889999999999999999999999988876

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.9e-35  Score=275.10  Aligned_cols=278  Identities=14%  Similarity=0.181  Sum_probs=225.8

Q ss_pred             CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      |+|..++.  .++.+.+|+......  .. ...+.+|...|++++|+|++++|++++.||.|++||+.+++.......  
T Consensus        18 ~~~~~l~~~~~d~~v~i~~~~~~~~--~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--   92 (372)
T 1k8k_C           18 KDRTQIAICPNNHEVHIYEKSGNKW--VQ-VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI--   92 (372)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETTEE--EE-EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC--
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCCcE--Ee-eeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe--
Confidence            44444433  367788888654431  12 223348999999999999999999999999999999988764433322  


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE---eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC---LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI  219 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i  219 (482)
                          ..|...|.+++|+|++++|++++.|+.|++||+..+..   ...+...|...|.+++|+|++.+|++++.||.|++
T Consensus        93 ----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  168 (372)
T 1k8k_C           93 ----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI  168 (372)
T ss_dssp             ----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ----ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEE
Confidence                23578999999999999999999999999999988762   44444678899999999999999999999999999


Q ss_pred             EeC------------------CCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc
Q psy8448         220 HGL------------------KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI  281 (482)
Q Consensus       220 ~d~------------------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  281 (482)
                      ||+                  ..++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.   .+..
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~  245 (372)
T 1k8k_C          169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---SETL  245 (372)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---CSSC
T ss_pred             EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc---cCCC
Confidence            995                  3678888898999999999999999999999999999999999999888887   7888


Q ss_pred             ceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC--cEEEE-------------------------------------ecCCc
Q psy8448         282 AVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG--QIVRS-------------------------------------LSSGK  322 (482)
Q Consensus       282 ~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~-------------------------------------~~~~~  322 (482)
                      ++.+++|+|++ .+++++ .|+.|++|++..  .....                                     .....
T Consensus       246 ~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (372)
T 1k8k_C          246 PLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS  323 (372)
T ss_dssp             CEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred             CeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc
Confidence            99999999998 666666 999999999943  21110                                     11112


Q ss_pred             ccCcCEEEEEEc-CCC---CEEEEEeCCcEEEEEeehh
Q psy8448         323 REGGDFLCCTTS-PRG---EWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       323 ~~~~~v~~~~~~-~~g---~~l~~~~~dg~i~iw~~~~  356 (482)
                      .|...|++++|. ++|   .+|++|+.||.|++|+++.
T Consensus       324 ~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          324 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence            457899999966 676   9999999999999888764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=8.9e-36  Score=277.87  Aligned_cols=268  Identities=15%  Similarity=0.225  Sum_probs=223.1

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEecCCCceeecccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPD----GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML  148 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  148 (482)
                      .++.+.+|+.........+.......|...|++++|+|+    +++|++|+.||.|++||+.+++....+.        +
T Consensus        42 ~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------~  113 (366)
T 3k26_A           42 GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--------G  113 (366)
T ss_dssp             ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--------S
T ss_pred             CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec--------C
Confidence            466788888775554444443333358899999999998    6799999999999999999887765543        3


Q ss_pred             ccccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEeEEee--cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC
Q psy8448         149 MEEAVMSLAYSR-DSEMLASGSQSGKVKIWKIATGQCLRKLE--KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG  225 (482)
Q Consensus       149 h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  225 (482)
                      |...|.+++|+| ++++|++++.||.|++||+++++.+..+.  ..|...|.+++|+|++.+|++++.||.|++||++++
T Consensus       114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (366)
T 3k26_A          114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK  193 (366)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence            578999999999 99999999999999999999998888773  468899999999999999999999999999999987


Q ss_pred             ceEEEee----------------------------ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------
Q psy8448         226 KMLKEFR----------------------------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC--------  269 (482)
Q Consensus       226 ~~~~~~~----------------------------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------  269 (482)
                      +....+.                            .|...|.+++|+  +++|++++.|+.|++||+++++.        
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  271 (366)
T 3k26_A          194 RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPS  271 (366)
T ss_dssp             HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTT
T ss_pred             ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccC
Confidence            6544333                            389999999998  77999999999999999988654        


Q ss_pred             ------eeeeeccCCCccceeEEEEcCC--CCCEEEEEeCCCeEEEEEcC-Cc----EEEEecCCcccCcCEEEEEEcCC
Q psy8448         270 ------TSTFKSLGASDIAVNSIHLLPK--NTEHFVVCNKTNTVVIMNMQ-GQ----IVRSLSSGKREGGDFLCCTTSPR  336 (482)
Q Consensus       270 ------~~~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~d~~i~i~d~~-~~----~~~~~~~~~~~~~~v~~~~~~~~  336 (482)
                            +..+.   .|...|.+++|+|+  + .++++++.||.|++||+. ++    ....+..+ .+...|.+++|+|+
T Consensus       272 ~~~~~~~~~~~---~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~  346 (366)
T 3k26_A          272 ESNVTILGRFD---YSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH-KCGAAIRQTSFSRD  346 (366)
T ss_dssp             CCCEEEEEEEE---CSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCT-TCCSCEEEEEECTT
T ss_pred             Ccchheecccc---ccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEccc-ccCCceEEEEeCCC
Confidence                  34444   77888999999999  7 899999999999999995 32    34444433 23688999999999


Q ss_pred             CCEEEEEeCCcEEEEEeeh
Q psy8448         337 GEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       337 g~~l~~~~~dg~i~iw~~~  355 (482)
                      +++|++++.||.|++|++.
T Consensus       347 ~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          347 SSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSEEEEEETTSEEEEEEC-
T ss_pred             CCeEEEEeCCCEEEEEEec
Confidence            9999999999999988753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-34  Score=268.77  Aligned_cols=270  Identities=15%  Similarity=0.203  Sum_probs=230.0

Q ss_pred             CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      |+|..+..  .++.+.+|+......     ...+.+|...|.+++|+|++++|++++.||.|++||+.+++....+.   
T Consensus        42 ~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---  113 (369)
T 3zwl_B           42 KEGDLLFSCSKDSSASVWYSLNGER-----LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK---  113 (369)
T ss_dssp             TTSCEEEEEESSSCEEEEETTTCCE-----EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCchh-----hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---
Confidence            44444443  366788888654332     23345899999999999999999999999999999999988776655   


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeE-----------eEEeecccCC--CeEEEEEccC
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIWKIATGQC-----------LRKLEKAHSL--GVTCIQFSRD  204 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~~--~v~~i~~~~~  204 (482)
                            |...+.+++|+|+++++++++.+     |.|.+||+..+..           ...+ ..|..  .+.+++|+|+
T Consensus       114 ------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  186 (369)
T 3zwl_B          114 ------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTK  186 (369)
T ss_dssp             ------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGG
T ss_pred             ------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCC
Confidence                  35789999999999999999998     9999999876532           2222 33444  8999999999


Q ss_pred             CCEEEEEECCCeEEEEeCCC-CceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccce
Q psy8448         205 NSQILTASFDTYVRIHGLKS-GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV  283 (482)
Q Consensus       205 ~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  283 (482)
                      +++|++++.||.|++||+++ .+.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+.    +...+
T Consensus       187 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~  262 (369)
T 3zwl_B          187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPL  262 (369)
T ss_dssp             GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCc
Confidence            99999999999999999998 78888999999999999999999999999999999999999999888874    57789


Q ss_pred             eEEEEcCCCCCEEEEEeCCC--------------eEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE
Q psy8448         284 NSIHLLPKNTEHFVVCNKTN--------------TVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV  348 (482)
Q Consensus       284 ~~i~~~~~~~~~l~~~~~d~--------------~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~  348 (482)
                      ..++|+|++ .++++++.++              .+++||. .++.+..+..+   ...|.+++|+|++++|++++.||.
T Consensus       263 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~  338 (369)
T 3zwl_B          263 NTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH---FGPLNTVAISPQGTSYASGGEDGF  338 (369)
T ss_dssp             EEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCEEEEEECC---SSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc---cCcEEEEEECCCCCEEEEEcCCCe
Confidence            999999999 7888888887              8999999 67777777665   788999999999999999999999


Q ss_pred             EEEEeehhh
Q psy8448         349 LVVRLIQQY  357 (482)
Q Consensus       349 i~iw~~~~~  357 (482)
                      |++|+++..
T Consensus       339 v~iw~~~~~  347 (369)
T 3zwl_B          339 IRLHHFEKS  347 (369)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEECccc
Confidence            998887643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=278.71  Aligned_cols=313  Identities=14%  Similarity=0.140  Sum_probs=229.4

Q ss_pred             hhhccCCCCCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceee
Q psy8448          57 WQQHQGLLPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRK  136 (482)
Q Consensus        57 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~  136 (482)
                      |-....+.|+|..++..+.+..+.+   ...+    +.+ .+|...|.+++|+|+|       .++.+.+|+   ++...
T Consensus        17 ~v~sv~~SpDG~~iASas~D~TV~d---~~~~----~~l-~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~   78 (588)
T 2j04_A           17 WKNNLTWARDGTLYLTTFPDISIGQ---PKYA----KDI-NCNSKNLFHVKEFPLE-------FENKLDFEL---AQQNG   78 (588)
T ss_dssp             SSCCEEECTTSCEEEECSSSEEEEE---ECCC----SCC-SSBGGGTEEEEEECCC-------CCCTTTTSC---CCSSC
T ss_pred             cEEEEEECCCCCEEEEEcCCceeec---cccc----cee-cCCCccEEEEEECCCC-------CcceEEEEe---CCCce
Confidence            4444455566666666666655552   2222    222 4899999999999998       355555554   33222


Q ss_pred             ccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCC-----CeEEEEEccCCCEEEEE
Q psy8448         137 DLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSL-----GVTCIQFSRDNSQILTA  211 (482)
Q Consensus       137 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~~~  211 (482)
                      .+...       |...|.+++|+|+|++||+++.||.|++||...  .+..+ . |..     .+.+++|+|+|++|++|
T Consensus        79 ~~~~~-------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsg  147 (588)
T 2j04_A           79 LLNSQ-------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVG  147 (588)
T ss_dssp             SSTTS-------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred             EeecC-------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEE
Confidence            22222       357899999999999999999999999999543  55555 3 554     59999999999999999


Q ss_pred             ECCCeEEEEeCCCCce-------EEEe----eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---eeeeccC
Q psy8448         212 SFDTYVRIHGLKSGKM-------LKEF----RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECT---STFKSLG  277 (482)
Q Consensus       212 ~~dg~i~i~d~~~~~~-------~~~~----~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~  277 (482)
                      +.||+|++||+.+++.       +.++    .+|...|.+++|+|+|  +++++.|+.|++||+..+...   .++..  
T Consensus       148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~--  223 (588)
T 2j04_A          148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN--  223 (588)
T ss_dssp             ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC--
T ss_pred             cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc--
Confidence            9999999999998853       5666    5677899999999999  888999999999999887742   33421  


Q ss_pred             CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEE--cCCCCEEEEEeCCcEEEEEeeh
Q psy8448         278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTT--SPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       278 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +|...|.+++|+  + ..+++++ ++.|++||..+.....+..+  |...+..++|  +|++..|+++++||. ++|..+
T Consensus       224 ~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          224 ASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             cccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            677899999999  4 6888887 69999999976666454432  3788999999  999999999999999 977654


Q ss_pred             hhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhh
Q psy8448         356 QYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARS  435 (482)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (482)
                                   .+...                                   ++..+++.    .++.+++|...... 
T Consensus       297 -------------~~~~s-----------------------------------pd~~l~a~----~d~~v~lW~~~g~~-  323 (588)
T 2j04_A          297 -------------ELHVT-----------------------------------ADNIIAPY----LEKKFKKWSTIWNE-  323 (588)
T ss_dssp             -------------SEEEE-----------------------------------CCCSSHHH----HHHHHHHTTTTTTS-
T ss_pred             -------------cEEEC-----------------------------------CCceEEEE----cCCEEEEEECCCCc-
Confidence                         11111                                   22222222    26777777653222 


Q ss_pred             hccccCcccccccCcceecccceeeccccCCcceEEEEec
Q psy8448         436 LLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSE  475 (482)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~  475 (482)
                        ..          .+.+ ...|.+++|||||+.+|+++.
T Consensus       324 --l~----------~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          324 --FN----------NYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             --SS----------SSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             --ee----------eecc-ceEEEEEEECCCCCEEEEEEe
Confidence              11          4434 677999999999999999873

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-36  Score=289.91  Aligned_cols=276  Identities=9%  Similarity=0.076  Sum_probs=216.3

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEecCCCceeec---cccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPD------GQYLITGSVDGFIEVWNFTTGKIRKD---LKYQAQ  143 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~  143 (482)
                      .++.+.+|+.......... ...+.+|.+.|.+++|+|+      +.+||+|+.||+|+|||+.+++....   ....+.
T Consensus       181 ~D~tI~iWd~~~~~~~~~~-~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~  259 (524)
T 2j04_B          181 HSSCIQIFKMNTSTLHCVK-VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS  259 (524)
T ss_dssp             -CEEEEEEEEETTTCCEEE-EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred             CCceEEEEEccCCCCCceE-EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence            3667888987554322211 1223478899999999996      57999999999999999987653210   011122


Q ss_pred             cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEe-EEeecccCCCeEEE--EEccCC-CEEEEEECCCeEEE
Q psy8448         144 DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL-RKLEKAHSLGVTCI--QFSRDN-SQILTASFDTYVRI  219 (482)
Q Consensus       144 ~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~i--~~~~~~-~~l~~~~~dg~i~i  219 (482)
                      ..+.+|...|++++|++++ .|++|+.||+|++||++++... ..+ ..|...|.++  +|+|++ .+|++|+.|++|++
T Consensus       260 ~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~-~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl  337 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYD-QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI  337 (524)
T ss_dssp             EEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEE-ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred             EEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEe-ecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence            3456788999999999864 8999999999999999877443 344 6899999999  567887 89999999999999


Q ss_pred             EeCCCCceEEEeecccc--ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEE
Q psy8448         220 HGLKSGKMLKEFRGHSS--FVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFV  297 (482)
Q Consensus       220 ~d~~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~  297 (482)
                      ||++++++...+.+|..  .|.+++|+|+++.+++++.|++|++||++++.+...+.   +|...|++++|+|++ .+++
T Consensus       338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp~g-~~l~  413 (524)
T 2j04_B          338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSRLH-PMVL  413 (524)
T ss_dssp             ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCSSC-CBCE
T ss_pred             EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee---cCCCceEEEEeCCCC-CeEE
Confidence            99999888777776653  58899999999999999999999999999998877776   789999999999998 7899


Q ss_pred             EEeCCCeEEEEEcCCc---------------EEEEec---------------------------CCcccCcCEEEEEEcC
Q psy8448         298 VCNKTNTVVIMNMQGQ---------------IVRSLS---------------------------SGKREGGDFLCCTTSP  335 (482)
Q Consensus       298 ~~~~d~~i~i~d~~~~---------------~~~~~~---------------------------~~~~~~~~v~~~~~~~  335 (482)
                      +|+.|++|++||...+               .+..+.                           ....|...|.+++|+|
T Consensus       414 Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp  493 (524)
T 2j04_B          414 AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE  493 (524)
T ss_dssp             EEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred             EEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence            9999999999986211               111110                           0112467889999999


Q ss_pred             CCC---EEEEEeCCcEEEEEeeh
Q psy8448         336 RGE---WIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       336 ~g~---~l~~~~~dg~i~iw~~~  355 (482)
                      +++   ++++|+.||.|+||+++
T Consensus       494 ~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          494 TSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             STTTTTEEEEECTTSEEEEEECS
T ss_pred             CCCccHHHHhhccCceEEEEEcc
Confidence            964   99999999999988764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.7e-34  Score=276.53  Aligned_cols=232  Identities=23%  Similarity=0.434  Sum_probs=203.0

Q ss_pred             eeecCCCCcE-EEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          94 QIKFGSKSHV-ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        94 ~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      ..+.+|.+.| .|+  ++++++|++|+.||.|++||+.+++....+.        +|...|.+++|+  ++++++|+.||
T Consensus       112 ~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~--~~~l~s~~~dg  179 (445)
T 2ovr_B          112 KVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--------GHTGGVWSSQMR--DNIIISGSTDR  179 (445)
T ss_dssp             EEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECC--------CCSSCEEEEEEE--TTEEEEEETTS
T ss_pred             EEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEc--------CCCCCEEEEEec--CCEEEEEeCCC
Confidence            4556898875 554  4568999999999999999999988765544        467899999998  56999999999


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      .|++||+.+++.+..+ ..|...|.+++|+  +..+++|+.||.|++||+++++.+..+.+|...|.+++|  +++++++
T Consensus       180 ~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~  254 (445)
T 2ovr_B          180 TLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVS  254 (445)
T ss_dssp             CEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEE
T ss_pred             eEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEE
Confidence            9999999999999888 6899999999995  568999999999999999999999999999999999999  6788999


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEE
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCC  331 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~  331 (482)
                      ++.||.|++||+++++++..+.   .|...|.++.|  ++ ..+++++.|+.|++||+ +++.+..+..+   ...+.++
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~v~~~  325 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQ---GHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGH---QSLTSGM  325 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEEC---CCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCC---CSCEEEE
T ss_pred             EcCCCEEEEEECCCCcEeEEec---CCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCC---cccEEEE
Confidence            9999999999999999888887   78889999999  44 78999999999999999 67777777655   6677777


Q ss_pred             EEcCCCCEEEEEeCCcEEEEEe
Q psy8448         332 TTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       332 ~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      .+  +++++++|+.||.|++|+
T Consensus       326 ~~--~~~~l~~~~~dg~i~vwd  345 (445)
T 2ovr_B          326 EL--KDNILVSGNADSTVKIWD  345 (445)
T ss_dssp             EE--ETTEEEEEETTSCEEEEE
T ss_pred             EE--eCCEEEEEeCCCeEEEEE
Confidence            77  467999999999999444

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.1e-36  Score=283.74  Aligned_cols=263  Identities=19%  Similarity=0.218  Sum_probs=217.5

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      ++.+.+|+.........+     ..| ..+....|+|++++|++|+.||.|++||+.+++....+        .+|...|
T Consensus        77 d~~v~i~d~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~h~~~v  142 (420)
T 3vl1_A           77 DGHDFLFNTIIRDGSKML-----KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID--------QAHVSEI  142 (420)
T ss_dssp             TTEEEEEECCSEETTTTS-----CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET--------TSSSSCE
T ss_pred             CCcEEEEEecccceeeEE-----ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec--------ccccCcc
Confidence            677888886554433222     244 44556678999999999999999999999987665443        3467899


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  233 (482)
                      ++++|+|++++|++++.|+.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..
T Consensus       143 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  221 (420)
T 3vl1_A          143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR  221 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence            99999999999999999999999999999988888 68999999999999999999999999999999999999888874


Q ss_pred             ---cc---------------------cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEc
Q psy8448         234 ---HS---------------------SFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLL  289 (482)
Q Consensus       234 ---~~---------------------~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  289 (482)
                         +.                     ..+.+++|+|++++|++++.||.|++||+++++....+..  .|...|.+++|+
T Consensus       222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~  299 (420)
T 3vl1_A          222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS--KFTCSCNSLTVD  299 (420)
T ss_dssp             TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC--TTSSCEEEEEEC
T ss_pred             CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc--ccCCCceeEEEe
Confidence               33                     3444455678999999999999999999999987776643  578899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcC-C-cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         290 PKNTEHFVVCNKTNTVVIMNMQ-G-QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       290 ~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      |++..++++++.||.|++||++ + ..+..+..++  ...+.++.+ +++++|++++.||.|++|++..
T Consensus       300 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          300 GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE--GTPINNVYF-AAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST--TSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC--CCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence            9995599999999999999994 4 3355555432  567888855 5788999999999999888764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-34  Score=271.21  Aligned_cols=263  Identities=17%  Similarity=0.256  Sum_probs=218.3

Q ss_pred             ccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          72 LFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      ..++.+.+|+......    ...+...|...|++++|+|++++|++|+.||.|++||+.+++....+.        +|..
T Consensus       110 ~~d~~v~lw~~~~~~~----~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~  177 (401)
T 4aez_A          110 ALERNVYVWNADSGSV----SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--------GHQA  177 (401)
T ss_dssp             EETTEEEEEETTTCCE----EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSS
T ss_pred             ECCCeEEEeeCCCCcE----eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--------CCCC
Confidence            3467788888765432    223334589999999999999999999999999999999887665544        3578


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  230 (482)
                      .|.+++|+  +++|++++.||.|++||++. +.....+ ..|...|.+++|+|++.+|++++.|+.|++||+++++.+..
T Consensus       178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  254 (401)
T 4aez_A          178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT  254 (401)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE
T ss_pred             ceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE
Confidence            99999994  57999999999999999984 4555555 68999999999999999999999999999999999999999


Q ss_pred             eeccccceeEEEEcCCCC-EEEEEe--CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE--eCCCeE
Q psy8448         231 FRGHSSFVNDITFTADGH-SVLSAS--SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC--NKTNTV  305 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~~i  305 (482)
                      +..|...|.+++|+|++. ++++++  .|+.|++||+++++....+.    +...+.+++|+|++ ..++++  +.||.|
T Consensus       255 ~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~-~~l~~~~g~~dg~i  329 (401)
T 4aez_A          255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHS-KEIMSTHGFPDNNL  329 (401)
T ss_dssp             ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSS-SEEEEEECTTTCEE
T ss_pred             ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCC-CeEEEEeecCCCcE
Confidence            999999999999999765 555554  69999999999999888874    56789999999999 677774  489999


Q ss_pred             EEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         306 VIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       306 ~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ++|++. ++...... ...|...|.+++|+|+|++|++++.||.|++|++.
T Consensus       330 ~v~~~~~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          330 SIWSYSSSGLTKQVD-IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             EEEEEETTEEEEEEE-EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             EEEecCCccceeEEE-ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            999994 33333321 12237889999999999999999999999966543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.2e-35  Score=274.28  Aligned_cols=273  Identities=17%  Similarity=0.184  Sum_probs=224.4

Q ss_pred             cCCcccccccccccc--ccccceeeecCCCCcEEEEEEcCC----C---CEEEEEeCCCeEEEEecCCCceeeccccccc
Q psy8448          73 FRGKAAMKDQEEEKY--PTQLSKQIKFGSKSHVECARFSPD----G---QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQ  143 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~~----~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  143 (482)
                      .++.+.+|+......  +.... ....+|...|++++|+|+    +   ++|++++.||.|++||+.+++......   .
T Consensus        34 ~dg~i~iw~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~  109 (397)
T 1sq9_A           34 GDGYLKVWDNKLLDNENPKDKS-YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI---F  109 (397)
T ss_dssp             TTSEEEEEESBCCTTCCGGGGE-EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEE---E
T ss_pred             CCCEEEEEECCCcccccCCCcc-eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccc---c
Confidence            367788888765541  11222 233489999999999999    9   999999999999999998876511000   1


Q ss_pred             cccccc-----cccEEEEEEc----CCCCE-EEEEeCCCcEEEEEcCC------CeEeE-----Eee------cccCCCe
Q psy8448         144 DNFMLM-----EEAVMSLAYS----RDSEM-LASGSQSGKVKIWKIAT------GQCLR-----KLE------KAHSLGV  196 (482)
Q Consensus       144 ~~~~~h-----~~~i~~l~~~----~~~~~-l~~~~~dg~i~iwd~~~------~~~~~-----~~~------~~~~~~v  196 (482)
                      ..+..|     ...|.+++|+    |++++ |++++.||.|++||+.+      ++.+.     .+.      ..|...|
T Consensus       110 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  189 (397)
T 1sq9_A          110 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA  189 (397)
T ss_dssp             EEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC
T ss_pred             eeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc
Confidence            122234     4889999999    99999 99999999999999988      65554     552      3478889


Q ss_pred             EEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec---c---ccceeEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q psy8448         197 TCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG---H---SSFVNDITFTADGHSVLSASSD---GTVKMWNLKTT  267 (482)
Q Consensus       197 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~i~~l~~~~~~~~l~~~~~d---g~i~i~d~~~~  267 (482)
                      .+++|+|++ ++++++.|+.|++||+++++.+..+..   |   ...|.+++|+|++++|++++.|   |.|++||++++
T Consensus       190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          190 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             CEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             eEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            999999999 999999999999999999999999998   8   9999999999999999999999   99999999999


Q ss_pred             ceeeeeeccCC-------------CccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec------CC------
Q psy8448         268 ECTSTFKSLGA-------------SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS------SG------  321 (482)
Q Consensus       268 ~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~------~~------  321 (482)
                      +.+..+.   .             |...|.+++|+|++ .+|++++.|+.|++||+ .++.+..+.      .+      
T Consensus       269 ~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  344 (397)
T 1sq9_A          269 ERIGSLS---VPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA  344 (397)
T ss_dssp             CEEEEEC---BC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCC
T ss_pred             cccceec---cCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhc
Confidence            8888876   5             88999999999998 89999999999999999 677777776      32      


Q ss_pred             ------cccCcCEEEEEEcCCC----------CEEEEEeCCcEEEEEee
Q psy8448         322 ------KREGGDFLCCTTSPRG----------EWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       322 ------~~~~~~v~~~~~~~~g----------~~l~~~~~dg~i~iw~~  354 (482)
                            ..|...|.+++|+|++          ++|++++.||.|++|++
T Consensus       345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             cccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence                  1126789999999998          79999999999996654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-34  Score=271.62  Aligned_cols=276  Identities=17%  Similarity=0.233  Sum_probs=217.4

Q ss_pred             CCCCC-ceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeecc
Q psy8448          63 LLPPG-TTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDL  138 (482)
Q Consensus        63 ~~~~g-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~  138 (482)
                      +.|+| ..++.  .++.+.+|+..........   ...+|...|.+++|+| ++++|++++.|+.|++||+.+.. ...+
T Consensus        81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~  156 (383)
T 3ei3_B           81 WHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI---QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQVF  156 (383)
T ss_dssp             ECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE---CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EEEE
T ss_pred             ECCCCCCEEEEEcCCCeEEEEeCCCcccceee---ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eEEE
Confidence            34666 44444  3577888987654432221   1237999999999999 78999999999999999998533 3322


Q ss_pred             ccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeE
Q psy8448         139 KYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYV  217 (482)
Q Consensus       139 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i  217 (482)
                      ...     ..|...|.+++|+|++++|++++.|+.|++||+ +++.+..+ ..|...|.+++|+|+++ ++++++.|+.|
T Consensus       157 ~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  229 (383)
T 3ei3_B          157 AKT-----DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATV  229 (383)
T ss_dssp             ECC-----CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             ecc-----CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEE
Confidence            221     224578999999999999999999999999998 56777777 68999999999999998 89999999999


Q ss_pred             EEEeCCC----CceEEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeccC----CCc--------
Q psy8448         218 RIHGLKS----GKMLKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----ASD--------  280 (482)
Q Consensus       218 ~i~d~~~----~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~--------  280 (482)
                      ++||+++    ++.+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++....+....    .+.        
T Consensus       230 ~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (383)
T 3ei3_B          230 KLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWH  308 (383)
T ss_dssp             EEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEEC
T ss_pred             EEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEecc
Confidence            9999998    5566666 6999999999999 99999999999999999999887766654211    112        


Q ss_pred             --cceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         281 --IAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       281 --~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                        ..+..++++|++ .+  +++.|+.|++||+ +++.+..+..+. +...+..++|+|++++|++|+ ||.|++|+++
T Consensus       309 p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          309 PMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             SSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred             CCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence              234446666666 33  6678999999999 688888877542 256677789999999999997 9999988764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3e-35  Score=277.93  Aligned_cols=242  Identities=14%  Similarity=0.177  Sum_probs=198.8

Q ss_pred             cEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q psy8448         102 HVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg~i~iwd~  179 (482)
                      ....++++|+...++ +++.||.|+||++.+....    ......+.+|...|++++|+| ++++|++|+.||.|++||+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~  111 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV----DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI  111 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC----CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC----CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence            345688998765444 5788999999999654322    112234566899999999999 9999999999999999999


Q ss_pred             CCC-------eEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEe--eccccceeEEEEcCCCCE
Q psy8448         180 ATG-------QCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEF--RGHSSFVNDITFTADGHS  249 (482)
Q Consensus       180 ~~~-------~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~l~~~~~~~~  249 (482)
                      .++       +.+..+ .+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+  ..|...|.+++|+|++++
T Consensus       112 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          112 PDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             CTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             cCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence            887       456666 6899999999999998 69999999999999999999999999  789999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeccCCCccc-eeEEEEcCCCCCEEEEE---eCCCeEEEEEcC-CcE-EEEecCCcc
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIA-VNSIHLLPKNTEHFVVC---NKTNTVVIMNMQ-GQI-VRSLSSGKR  323 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~~~---~~d~~i~i~d~~-~~~-~~~~~~~~~  323 (482)
                      |++++.||.|++||+++++.+..+..  .|... +.++.|+|++ .+++++   +.|+.|++||++ ++. +......  
T Consensus       191 l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~--  265 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGTVVAEKDR--PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELD--  265 (402)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEC--SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECC--
T ss_pred             EEEEecCCcEEEEeCCCCceeeeecc--CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEecc--
Confidence            99999999999999999988877721  55544 8999999998 788888   789999999994 332 2222211  


Q ss_pred             cCcCEEEEEEcCCCCEEEE-EeCCcEEEEEe
Q psy8448         324 EGGDFLCCTTSPRGEWIYC-VGEDMVLVVRL  353 (482)
Q Consensus       324 ~~~~v~~~~~~~~g~~l~~-~~~dg~i~iw~  353 (482)
                      +...+.+++|+|++++|++ |+.||.|++|+
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d  296 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE  296 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEE
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEE
Confidence            2567899999999999975 55799999444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-35  Score=278.49  Aligned_cols=276  Identities=12%  Similarity=0.151  Sum_probs=204.6

Q ss_pred             CCCceeecc--CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          65 PPGTTIDLF--RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        65 ~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      |+|..++..  ++.+.+|+......   .....+.+|...|++++|+|++++|++|+.||.|++||+.+++.     ...
T Consensus        21 ~~g~~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~-----~~~   92 (377)
T 3dwl_C           21 SQRTEFVTTTATNQVELYEQDGNGW---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT-----WKQ   92 (377)
T ss_dssp             SSSSEEECCCSSSCBCEEEEETTEE---EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-----CCC
T ss_pred             CCCCEEEEecCCCEEEEEEccCCce---EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-----eee
Confidence            344444333  67788888764321   12223348999999999999999999999999999999998761     111


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE---eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC---LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI  219 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i  219 (482)
                      ...+.+|...|.+++|+|++++|++++.|+.|++||+++++.   ...+...|...|.+++|+|++++|++++.|+.|++
T Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i  172 (377)
T 3dwl_C           93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV  172 (377)
T ss_dssp             EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred             eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence            223344788999999999999999999999999999988873   66664349999999999999999999999999999


Q ss_pred             EeCC------------------CCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eeeeeccC
Q psy8448         220 HGLK------------------SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC----TSTFKSLG  277 (482)
Q Consensus       220 ~d~~------------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~  277 (482)
                      ||++                  .++++..+ +|...|.+++|+|++++|++++.||.|++||+++++.    +..+.   
T Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---  248 (377)
T 3dwl_C          173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK---  248 (377)
T ss_dssp             EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE---
T ss_pred             EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec---
Confidence            9985                  34456666 8999999999999999999999999999999999887    55555   


Q ss_pred             CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-Cc--E-------------------------E---------EEecC
Q psy8448         278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQ--I-------------------------V---------RSLSS  320 (482)
Q Consensus       278 ~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~--~-------------------------~---------~~~~~  320 (482)
                      .|..+|.+++|+|++ .++++++.++.+ +|+.. +.  .                         .         ..+..
T Consensus       249 ~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (377)
T 3dwl_C          249 LSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN  326 (377)
T ss_dssp             CSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------
T ss_pred             CCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccc
Confidence            888999999999998 788877766655 66653 11  0                         0         00110


Q ss_pred             -------------CcccCcCEEEEEEcCCC-C---EEEEEeCCcEEEEEee
Q psy8448         321 -------------GKREGGDFLCCTTSPRG-E---WIYCVGEDMVLVVRLI  354 (482)
Q Consensus       321 -------------~~~~~~~v~~~~~~~~g-~---~l~~~~~dg~i~iw~~  354 (482)
                                   ...|...|+++++.+.. .   .|++++.||.|++|++
T Consensus       327 ~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             hhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                         11257889999976543 3   6999999999998864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.2e-35  Score=270.80  Aligned_cols=265  Identities=15%  Similarity=0.283  Sum_probs=215.4

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEecCCCc-eeeccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPD---GQYLITGSVDGFIEVWNFTTGK-IRKDLKYQAQDNFMLM  149 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~h  149 (482)
                      ++.+.+|+......    ......+|...|++++|+|+   +++|++|+.||.|++||+.+++ ....        +.+|
T Consensus        43 d~~v~iw~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~  110 (357)
T 3i2n_A           43 TGVIQLYEIQHGDL----KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS--------VKGH  110 (357)
T ss_dssp             CEEEEEEEECSSSE----EEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE--------ECCC
T ss_pred             CcEEEEEeCCCCcc----cceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE--------EEec
Confidence            67788888764432    22223479999999999998   7999999999999999999876 3333        3356


Q ss_pred             cccEEEEE------EcCCCCEEEEEeCCCcEEEEEcCCCe-EeEEeecccC----CCeEEEE----EccCCCEEEEEECC
Q psy8448         150 EEAVMSLA------YSRDSEMLASGSQSGKVKIWKIATGQ-CLRKLEKAHS----LGVTCIQ----FSRDNSQILTASFD  214 (482)
Q Consensus       150 ~~~i~~l~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~v~~i~----~~~~~~~l~~~~~d  214 (482)
                      ...|.+++      |+|++++|++++.||.|++||+.+++ ....+ ..+.    ..+.+++    |+|++.++++++.|
T Consensus       111 ~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d  189 (357)
T 3i2n_A          111 KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN  189 (357)
T ss_dssp             SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred             ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence            88999995      46889999999999999999999887 56666 3333    3789998    67899999999999


Q ss_pred             CeEEEEeCCCCceEEEeeccccceeEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeeeee--ccCCCccceeEEEEc
Q psy8448         215 TYVRIHGLKSGKMLKEFRGHSSFVNDITFTA---DGHSVLSASSDGTVKMWNLKTTECTSTFK--SLGASDIAVNSIHLL  289 (482)
Q Consensus       215 g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~v~~i~~~  289 (482)
                      |.|++||+++++.... ..|...|.+++|+|   ++++|++++.||.|++||+++++....+.  ....|...|.+++|+
T Consensus       190 ~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  268 (357)
T 3i2n_A          190 GDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL  268 (357)
T ss_dssp             SEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE
T ss_pred             CeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC
Confidence            9999999999887554 55889999999999   99999999999999999998866544432  223788899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcC-C-------------------cEEEEecCCcccCcCEEEEEEcCCCCEEE-EEeCCcE
Q psy8448         290 PKNTEHFVVCNKTNTVVIMNMQ-G-------------------QIVRSLSSGKREGGDFLCCTTSPRGEWIY-CVGEDMV  348 (482)
Q Consensus       290 ~~~~~~l~~~~~d~~i~i~d~~-~-------------------~~~~~~~~~~~~~~~v~~~~~~~~g~~l~-~~~~dg~  348 (482)
                      |++..++++++.||.|++||++ +                   +.+..+..+   ...|.+++|+|++++|+ +++.||.
T Consensus       269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~s~~~d~~  345 (357)
T 3i2n_A          269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS---TQPISSLDWSPDKRGLCVCSSFDQT  345 (357)
T ss_dssp             TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC---SSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC---CCCeeEEEEcCCCCeEEEEecCCCc
Confidence            9984489999999999999984 2                   234444443   78899999999999998 8999999


Q ss_pred             EEEEeeh
Q psy8448         349 LVVRLIQ  355 (482)
Q Consensus       349 i~iw~~~  355 (482)
                      |++|++.
T Consensus       346 i~iw~~~  352 (357)
T 3i2n_A          346 VRVLIVT  352 (357)
T ss_dssp             EEEEEEC
T ss_pred             EEEEECC
Confidence            9977765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-34  Score=268.32  Aligned_cols=250  Identities=20%  Similarity=0.233  Sum_probs=206.1

Q ss_pred             ccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEE
Q psy8448         145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA--TGQCLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIH  220 (482)
Q Consensus       145 ~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~  220 (482)
                      .+.+|...|++++|+|++++|++++.||.|++||+.  +++....+ ..|...|.+++|+++  +.+|++++.||.|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            455689999999999999999999999999999998  45566666 689999999999976  8999999999999999


Q ss_pred             eCCCCc--eEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC-----
Q psy8448         221 GLKSGK--MLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK-----  291 (482)
Q Consensus       221 d~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----  291 (482)
                      |+++++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++....... ...|...|.+++|+|.     
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE-EECCTTCEEEEEECCCC----
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE-ecCCCCceEEEEEcCcccccc
Confidence            999987  67778889999999999999  9999999999999999999874332221 1278889999999994     


Q ss_pred             -------CCCEEEEEeCCCeEEEEEcC-Cc----EEEEecCCcccCcCEEEEEEcCC---CCEEEEEeCCcEEEEEeehh
Q psy8448         292 -------NTEHFVVCNKTNTVVIMNMQ-GQ----IVRSLSSGKREGGDFLCCTTSPR---GEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       292 -------~~~~l~~~~~d~~i~i~d~~-~~----~~~~~~~~~~~~~~v~~~~~~~~---g~~l~~~~~dg~i~iw~~~~  356 (482)
                             ...++++++.|+.|++||++ +.    ....+..   |...|.+++|+|+   +++|++++.||.|++|++  
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~--  238 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ--  238 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE--
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec---ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC--
Confidence                   23899999999999999993 33    2334443   3788999999999   899999999999995554  


Q ss_pred             hhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhh
Q psy8448         357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSL  436 (482)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (482)
                                      .++.....                          ..                            
T Consensus       239 ----------------~~~~~~~~--------------------------~~----------------------------  248 (379)
T 3jrp_A          239 ----------------DNEQGPWK--------------------------KT----------------------------  248 (379)
T ss_dssp             ----------------SSTTSCCE--------------------------EE----------------------------
T ss_pred             ----------------CCCCccce--------------------------ee----------------------------
Confidence                            33300000                          00                            


Q ss_pred             ccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         437 LRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       437 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                       ..          ....|...|++++|+|++++|++++.||.|++|
T Consensus       249 -~~----------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  283 (379)
T 3jrp_A          249 -LL----------KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  283 (379)
T ss_dssp             -ES----------SSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred             -ee----------ccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence             11          334588889999999999999999999999998

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-33  Score=268.75  Aligned_cols=262  Identities=19%  Similarity=0.290  Sum_probs=216.5

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++.+.+|+.........+   ...+|...|++++|+|+|++||+|+.||.|+|||+.+++.+..+.        +|...
T Consensus       123 ld~tV~lWd~~tg~~~~~~---~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~--------~h~~~  191 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--------SHSAR  191 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSC
T ss_pred             eCCEEEEEECCCCCEEEEE---EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe--------CCCCc
Confidence            3677888887654322111   124788999999999999999999999999999999988765544        35788


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc----eE
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK----ML  228 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~  228 (482)
                      +.+++++  +..|++|+.|+.+++||.............|...+..+.|+|++.++++++.|+.+++|+..+++    .+
T Consensus       192 v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~  269 (420)
T 4gga_A          192 VGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL  269 (420)
T ss_dssp             EEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS
T ss_pred             eEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee
Confidence            9888875  67999999999999999887654433337899999999999999999999999999999998775    34


Q ss_pred             EEeeccccceeEEEEcCCCC-EEEEE--eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe--CCC
Q psy8448         229 KEFRGHSSFVNDITFTADGH-SVLSA--SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN--KTN  303 (482)
Q Consensus       229 ~~~~~~~~~i~~l~~~~~~~-~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~  303 (482)
                      .....|...|.+++|+|++. .++++  +.|+.|++||+.++++...+.    ....+.++.|+|++ ..+++++  .|+
T Consensus       270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~-~~lv~~sg~~d~  344 (420)
T 4gga_A          270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHY-KELISGHGFAQN  344 (420)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTT-TEEEEEECTTTC
T ss_pred             eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec----cccceeeeeecCCC-CeEEEEEecCCC
Confidence            56678999999999999654 45543  479999999999999888874    45678999999998 5555544  789


Q ss_pred             eEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         304 TVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       304 ~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      .|++||+ +++.+..+..|   ...|++++|+|||++|++|+.|++|+||++.
T Consensus       345 ~I~iwd~~~~~~v~~l~gH---~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          345 QLVIWKYPTMAKVAELKGH---TSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             CEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEEECCCCcEEEEEcCC---CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            9999999 68888888765   7899999999999999999999999988764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-34  Score=273.24  Aligned_cols=276  Identities=16%  Similarity=0.213  Sum_probs=221.3

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      .++.+.+|+........... ..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++....... .....+.+|..
T Consensus        55 ~~g~i~v~~~~~~~~~~~~~-~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~-~~~~~~~~h~~  132 (402)
T 2aq5_A           55 GGGAFLVLPLGKTGRVDKNV-PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-EPVITLEGHTK  132 (402)
T ss_dssp             SSCCEEEEETTCCEECCTTC-CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC-SCSEEEECCSS
T ss_pred             CCCEEEEEECccCCCCCCCC-ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC-CceEEecCCCC
Confidence            46788889875443222222 23458999999999999 99999999999999999999875432211 22334566889


Q ss_pred             cEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         152 AVMSLAYSRDS-EMLASGSQSGKVKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       152 ~i~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      .|.+++|+|++ ++|++++.||.|++||+.+++.+..+. ..|...|.+++|+|++.+|++++.|+.|++||+++++.+.
T Consensus       133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  212 (402)
T 2aq5_A          133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA  212 (402)
T ss_dssp             CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred             eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence            99999999998 699999999999999999999888874 5789999999999999999999999999999999999998


Q ss_pred             Ee-eccccc-eeEEEEcCCCCEEEEE---eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEE-EEEeCCC
Q psy8448         230 EF-RGHSSF-VNDITFTADGHSVLSA---SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHF-VVCNKTN  303 (482)
Q Consensus       230 ~~-~~~~~~-i~~l~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~~~~~d~  303 (482)
                      .+ ..|.+. +.++.|+|++++|+++   +.|+.|++||+++++........ .+...+.+++|+|++ ..+ ++++.|+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~g~~dg  290 (402)
T 2aq5_A          213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDT-NIVYLCGKGDS  290 (402)
T ss_dssp             EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTT-TEEEEEETTCS
T ss_pred             eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCC-CEEEEEEcCCC
Confidence            88 678776 8999999999999998   78999999999987642222211 456789999999999 555 5666899


Q ss_pred             eEEEEEcC-CcE-EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         304 TVVIMNMQ-GQI-VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       304 ~i~i~d~~-~~~-~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      .|++||+. ++. +..+..+. +...+.+++|+|++.++++  .++.+++|++.
T Consensus       291 ~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          291 SIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             CEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred             eEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcC
Confidence            99999994 442 44444332 3678999999999998764  57799977765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-34  Score=273.95  Aligned_cols=250  Identities=12%  Similarity=0.107  Sum_probs=206.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc---eeeccccccc---------------------------------
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGK---IRKDLKYQAQ---------------------------------  143 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~---------------------------------  143 (482)
                      ..++.+++|+|+|++|+++. ++.|++||+.+++   .+..+.....                                 
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            35789999999999777664 7899999999998   4444332110                                 


Q ss_pred             -------------cccccccccEEEEEEcCCCCEE-EEEeCCCcEEEEEcC--CCeEeEEeec-ccCCCeEEEEEccCCC
Q psy8448         144 -------------DNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVKIWKIA--TGQCLRKLEK-AHSLGVTCIQFSRDNS  206 (482)
Q Consensus       144 -------------~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~-~~~~~v~~i~~~~~~~  206 (482)
                                   ....+|...|.+++|+|++++| ++++.||.|++||+.  +++.+..+.. .+...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                         0112455689999999999996 888899999999998  7877777632 5678899999999999


Q ss_pred             EEEEEECCCeEEEEeCCCCceEE----EeeccccceeEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeeeeeccCCC
Q psy8448         207 QILTASFDTYVRIHGLKSGKMLK----EFRGHSSFVNDITFTAD---GHSVLSASSDGTVKMWNLKTTECTSTFKSLGAS  279 (482)
Q Consensus       207 ~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~l~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  279 (482)
                      +|++++.+|.|++|++.+++...    .+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+..  +|
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~h  240 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF--GH  240 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC--CC
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec--CC
Confidence            99999999999999998877554    77889999999999999   99999999999999999999887766322  78


Q ss_pred             ccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCc----------------------ccCcCEEEEEEcCC
Q psy8448         280 DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGK----------------------REGGDFLCCTTSPR  336 (482)
Q Consensus       280 ~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~----------------------~~~~~v~~~~~~~~  336 (482)
                      ...|.+++|+ ++ .+|++++.|+.|++||+ +++.+..+..+.                      .....+.+++|+|+
T Consensus       241 ~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  318 (450)
T 2vdu_B          241 KHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN  318 (450)
T ss_dssp             SSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred             CCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence            8999999999 77 89999999999999999 677777665321                      12457899999999


Q ss_pred             CCEEEEEe-CCcEEEEEee
Q psy8448         337 GEWIYCVG-EDMVLVVRLI  354 (482)
Q Consensus       337 g~~l~~~~-~dg~i~iw~~  354 (482)
                      +++|++++ .|+.|++|++
T Consensus       319 ~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          319 LPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSEEEEEETTCSEEEEEEE
T ss_pred             CCEEEEEECCCCeEEEEEe
Confidence            99999999 8999996654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-35  Score=281.65  Aligned_cols=288  Identities=14%  Similarity=0.176  Sum_probs=226.4

Q ss_pred             CC-CCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecC---CCceeec
Q psy8448          64 LP-PGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFT---TGKIRKD  137 (482)
Q Consensus        64 ~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~---~~~~~~~  137 (482)
                      .| ++..++.  .++.+.+|+................+|...|++++|+|++++|++|+.||.|++||+.   +++....
T Consensus        72 s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  151 (437)
T 3gre_A           72 SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF  151 (437)
T ss_dssp             ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred             CCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec
Confidence            35 5555544  3677889987653222212222333799999999999999999999999999999995   5555443


Q ss_pred             cccccccccc--c--ccccEEEEE--EcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEE
Q psy8448         138 LKYQAQDNFM--L--MEEAVMSLA--YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILT  210 (482)
Q Consensus       138 ~~~~~~~~~~--~--h~~~i~~l~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~  210 (482)
                      ...+....+.  .  +...+.++.  +++++++|++++.||.|++||+++++.+..+... |...|.+++|+|++.+|++
T Consensus       152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  231 (437)
T 3gre_A          152 LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLIL  231 (437)
T ss_dssp             EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEE
T ss_pred             cccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEE
Confidence            3333221111  1  456788888  6688999999999999999999999999888432 8899999999999999999


Q ss_pred             EECCCeEEEEeCCCCceEEEee-ccccceeEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeeeeecc---------
Q psy8448         211 ASFDTYVRIHGLKSGKMLKEFR-GHSSFVNDITFTA----DGHSVLSASSDGTVKMWNLKTTECTSTFKSL---------  276 (482)
Q Consensus       211 ~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~l~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------  276 (482)
                      |+.||.|++||+++++++..+. .|...|.+++|+|    ++.+|++++.||.|++||++++++...+...         
T Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  311 (437)
T 3gre_A          232 GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHF  311 (437)
T ss_dssp             EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred             EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence            9999999999999999998886 7888999996665    6779999999999999999999887776522         


Q ss_pred             ------------CC--CccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCC--------------------
Q psy8448         277 ------------GA--SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSG--------------------  321 (482)
Q Consensus       277 ------------~~--~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~--------------------  321 (482)
                                  .+  |...|.+++|+ ++ .++++++.|+.|++||+ +++....+..+                    
T Consensus       312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (437)
T 3gre_A          312 LPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLL  389 (437)
T ss_dssp             SCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEE
T ss_pred             cccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEE
Confidence                        11  66779999999 55 79999999999999999 55555555432                    


Q ss_pred             --------------cccCcCEEEEEEcCC--CCEEEEEeCCcEEEEEe
Q psy8448         322 --------------KREGGDFLCCTTSPR--GEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       322 --------------~~~~~~v~~~~~~~~--g~~l~~~~~dg~i~iw~  353 (482)
                                    ..|...|.+++|+++  +.+|++|+.||.|+||.
T Consensus       390 ~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          390 RKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                          115788999999998  78999999999999773

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5.8e-34  Score=271.22  Aligned_cols=258  Identities=16%  Similarity=0.239  Sum_probs=214.1

Q ss_pred             eeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeec--cccccccccccccccEEEEEEcCCCC-EEEEEe
Q psy8448          94 QIKFGSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKD--LKYQAQDNFMLMEEAVMSLAYSRDSE-MLASGS  169 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~~~~  169 (482)
                      ....+|.+.|++++|+|+ +.+||+++.||.|++|++.+......  -.......+.+|...|++++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445589999999999997 78999999999999999976211100  01222334556789999999999988 999999


Q ss_pred             CCCcEEEEEcCCCeE-------eEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCC---ceEEEeeccccce
Q psy8448         170 QSGKVKIWKIATGQC-------LRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSG---KMLKEFRGHSSFV  238 (482)
Q Consensus       170 ~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i  238 (482)
                      .||.|++||+.++..       ...+ ..|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            999999999987322       3344 57899999999999 6788999999999999999987   5777888899999


Q ss_pred             eEEEEcCCCC-EEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC----
Q psy8448         239 NDITFTADGH-SVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG----  312 (482)
Q Consensus       239 ~~l~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~----  312 (482)
                      ++++|+|++. +|++|+.||.|++||+++ ..++..+.   .|...|.+++|+|++..++++++.|+.|++||+..    
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~---~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee---cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            9999999887 688999999999999998 45566666   78899999999999977899999999999999943    


Q ss_pred             -----------cEEEEecCCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEeehhhh
Q psy8448         313 -----------QIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLIQQYL  358 (482)
Q Consensus       313 -----------~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~  358 (482)
                                 ..+.....+   ...|.+++|+|+++ +|++++.||.|+||++....
T Consensus       358 ~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFIHGGH---TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             CCHHHHHHCCTTEEEECCCC---SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             cCccccccCCcceEEEcCCC---CCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence                       444444443   77899999999999 89999999999999887543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=294.71  Aligned_cols=255  Identities=20%  Similarity=0.230  Sum_probs=208.7

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC--CCEEEEEeCC
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD--SEMLASGSQS  171 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--~~~l~~~~~d  171 (482)
                      .++.+|.+.|++++|+|++++|++|+.||.|+|||+.++...      ....+.+|..+|++++|+|+  +++|++|+.|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~------~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D   76 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE------EEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc------cceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence            355699999999999999999999999999999998744321      12234457899999999987  9999999999


Q ss_pred             CcEEEEEcCCCe--EeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEEeCCCCc--eEEEeeccccceeEEEEcC
Q psy8448         172 GKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIHGLKSGK--MLKEFRGHSSFVNDITFTA  245 (482)
Q Consensus       172 g~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~l~~~~  245 (482)
                      |.|++||+.+++  ....+ ..|...|.+++|+|+  +..+++|+.||.|++||++++.  ....+.+|...|.+++|+|
T Consensus        77 g~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p  155 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred             CeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence            999999999886  55555 679999999999998  9999999999999999998873  3456678999999999999


Q ss_pred             -------------CCCEEEEEeCCCcEEEEECCCCcee-eeeeccCCCccceeEEEEcCCC--CCEEEEEeCCCeEEEEE
Q psy8448         246 -------------DGHSVLSASSDGTVKMWNLKTTECT-STFKSLGASDIAVNSIHLLPKN--TEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       246 -------------~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~i~d  309 (482)
                                   ++..+++++.||.|++||++++... ........|..+|.+++|+|++  +.++++++.||.|++||
T Consensus       156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                         5899999999999999999887422 1222233889999999999993  38999999999999999


Q ss_pred             cCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         310 MQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       310 ~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +...   ..........+...|.+++|+|+|++|++|+.||.|++|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            9432   122223333357889999999999999999999999977655

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.4e-34  Score=267.17  Aligned_cols=252  Identities=12%  Similarity=0.119  Sum_probs=197.5

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEEe-----------CCCeEEEEecCCCceeecc-ccccccccccccccEEEEEEcCCCC
Q psy8448          96 KFGSKSHVECARFSPDGQYLITGS-----------VDGFIEVWNFTTGKIRKDL-KYQAQDNFMLMEEAVMSLAYSRDSE  163 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~~-----------~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~h~~~i~~l~~~~~~~  163 (482)
                      +.+|...|.+++++  ++.+++|+           .|+.+++|++.+....... ..........++..+.+++|+|||+
T Consensus        69 l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~  146 (365)
T 4h5i_A           69 LEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT  146 (365)
T ss_dssp             CCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS
T ss_pred             ccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC
Confidence            45888899988775  55677654           4678999998765432211 1111112233456789999999999


Q ss_pred             EEEEEe--CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE--Eeecccccee
Q psy8448         164 MLASGS--QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK--EFRGHSSFVN  239 (482)
Q Consensus       164 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~  239 (482)
                      ++++++  .|++|++||+++++.+..+.  |...|.+++|+|+|+++++++. +.+.+|+..+++.+.  ....|...|.
T Consensus       147 ~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (365)
T 4h5i_A          147 VAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLS  223 (365)
T ss_dssp             CEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred             EEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEE
Confidence            987654  68999999999999988873  7788999999999999999984 556677777776654  3456888999


Q ss_pred             EEEEcCCCCEEEEEeCCC----cEEEEECCCCceee-eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCc
Q psy8448         240 DITFTADGHSVLSASSDG----TVKMWNLKTTECTS-TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQ  313 (482)
Q Consensus       240 ~l~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~  313 (482)
                      +++|+|+++.+++++.|+    .+++|++....... .......|..+|++++|+|++ .+|++|+.|+.|+|||+ +++
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~  302 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS  302 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE
T ss_pred             EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc
Confidence            999999999999999887    58889987765322 122233788899999999999 89999999999999999 677


Q ss_pred             EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      .+..+...  |...|++++|+|||++|++|+.|++|+||+++
T Consensus       303 ~~~~~~~g--H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          303 MSKIFKQA--HSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEEETTS--SSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             EEEEecCc--ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            77776443  37899999999999999999999999988775

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-35  Score=275.79  Aligned_cols=262  Identities=10%  Similarity=0.007  Sum_probs=206.0

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      .-...|.+++|+|||+++|+++.|++|+  |...++.   +        .+|...|.+++|+|+|       .++.+.+|
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l--------~gh~~~v~~V~FsPdg-------~~~~~~~~   72 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---I--------NCNSKNLFHVKEFPLE-------FENKLDFE   72 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---C--------SSBGGGTEEEEEECCC-------CCCTTTTS
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---e--------cCCCccEEEEEECCCC-------CcceEEEE
Confidence            3467899999999999999999999999  6444332   2        3578999999999998       45555555


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecccc-----ceeEEEEcCCCCEEEE
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSS-----FVNDITFTADGHSVLS  252 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~i~~l~~~~~~~~l~~  252 (482)
                      +.   +....+...|...|.+++|+|+|++|++++.||.|++||.+.  .+..+. |..     .+.+++|+|||++|++
T Consensus        73 ~~---~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAs  146 (588)
T 2j04_A           73 LA---QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV  146 (588)
T ss_dssp             CC---CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred             eC---CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence            53   322233235688899999999999999999999999999644  666666 665     4999999999999999


Q ss_pred             EeCCCcEEEEECCCCce-------eeeeec-cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcE----EEEecC
Q psy8448         253 ASSDGTVKMWNLKTTEC-------TSTFKS-LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI----VRSLSS  320 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~-------~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~  320 (482)
                      |+.||+|++||+.++..       +.++.. ..+|...|.+++|+|++   +++++.|+.+++||+.++.    ...+..
T Consensus       147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~  223 (588)
T 2j04_A          147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQN  223 (588)
T ss_dssp             EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred             EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecc
Confidence            99999999999998753       344421 12677899999999986   8899999999999995433    234432


Q ss_pred             CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchh
Q psy8448         321 GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVL  400 (482)
Q Consensus       321 ~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (482)
                      +  |...|.+++|+  |+.|++++ ++.|+                  +|+..++                         
T Consensus       224 ~--h~~~V~svaFs--g~~LASa~-~~tIk------------------LWd~~~~-------------------------  255 (588)
T 2j04_A          224 A--SRRKITDLKIV--DYKVVLTC-PGYVH------------------KIDLKNY-------------------------  255 (588)
T ss_dssp             C--CSSCCCCEEEE--TTEEEEEC-SSEEE------------------EEETTTT-------------------------
T ss_pred             c--ccCcEEEEEEE--CCEEEEEe-CCeEE------------------EEECCCC-------------------------
Confidence            2  26789999999  68999887 69999                  5565555                         


Q ss_pred             ccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccc--cCCcceEEEEecCce
Q psy8448         401 KSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTH--HPHQNLLGTYSEDGL  478 (482)
Q Consensus       401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~l~s~~~Dg~  478 (482)
                            .+                             ..          ...+|.+.|.+++|  +||++.|+++++||+
T Consensus       256 ------~~-----------------------------~~----------~~~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          256 ------SI-----------------------------SS----------LKTGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             ------EE-----------------------------EE----------EECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             ------eE-----------------------------EE----------EEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence                  11                             11          22279999999999  999999999999999


Q ss_pred             eecC
Q psy8448         479 LRFS  482 (482)
Q Consensus       479 i~iW  482 (482)
                       ++|
T Consensus       291 -klw  293 (588)
T 2j04_A          291 -KVL  293 (588)
T ss_dssp             -EEE
T ss_pred             -EEE
Confidence             887

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.4e-35  Score=278.39  Aligned_cols=268  Identities=18%  Similarity=0.242  Sum_probs=204.9

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      .+|.+.+|+......+...   ...+|.+.|++|+|+| ++++|++|+.||+|++||++++........+      .+..
T Consensus       140 ~dg~i~lWd~~~~~~~~~~---~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~------~~~~  210 (435)
T 4e54_B          140 KGGDIMLWNFGIKDKPTFI---KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD------TINI  210 (435)
T ss_dssp             TTSCEEEECSSCCSCCEEE---CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS------SCSC
T ss_pred             CCCEEEEEECCCCCceeEE---EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC------CCCc
Confidence            4788999987654432221   2348999999999998 7899999999999999999876443222211      1245


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCCceEEE
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~  230 (482)
                      .+.+++|+|++++|++|+.||.|++||++. +.+..+ ..|...|.+++|+|++. ++++++.|+.|++||+++.+....
T Consensus       211 ~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~  288 (435)
T 4e54_B          211 WFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS  288 (435)
T ss_dssp             CCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE-ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence            688999999999999999999999999864 455556 68999999999999876 678999999999999988765433


Q ss_pred             ---eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC---CCccceeEEEEcCCCCCEEEEEe----
Q psy8448         231 ---FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCN----  300 (482)
Q Consensus       231 ---~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~----  300 (482)
                         ..+|...|++++|+|++++|++++.||.|++||+++++....+....   .....+....|+|.+ ..++++.    
T Consensus       289 ~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~  367 (435)
T 4e54_B          289 FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDP  367 (435)
T ss_dssp             CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS-SCEEEECCCCT
T ss_pred             EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC-CEEEEEEcCCC
Confidence               35789999999999999999999999999999999988766554211   011123345666666 4444443    


Q ss_pred             --------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEE-EEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         301 --------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCC-TTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       301 --------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~-~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                              .++.|++||. +++.+..+..++  ...|.++ +|+|+|++|++|+ |+.|+||+++
T Consensus       368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~--~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPE--SSGISSLNEFNPMGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             TSCCSSTTCCCCEEEECSSSCCEEEEECCSS--CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred             CeEEEEecCCCEEEEEECCCCcEEEEEeCCC--CCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence                    3467999999 678877776543  5667776 6999999999876 7899955543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-34  Score=264.48  Aligned_cols=231  Identities=11%  Similarity=0.088  Sum_probs=186.5

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC------
Q psy8448         107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA------  180 (482)
Q Consensus       107 ~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~------  180 (482)
                      .+.+++++|++|+.||.|++||+.+++.+..+.          ...|.++.|+|+   +++++.|++|++|+..      
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence            345678899999999999999999998776655          245778888888   9999999999999655      


Q ss_pred             ---CCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEeCCCCceEEEee-ccccceeEEEEcCCCCEEEEEe
Q psy8448         181 ---TGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLKSGKMLKEFR-GHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       181 ---~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                         +++.+..+...|...|.+++|+|  +++++++++.||.|++||+++++...... .+...|.+++|+|++.+|++|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence               55556666557778999999999  99999999999999999999999876664 4556899999999999999999


Q ss_pred             CCCcEEEEECCCCcee-eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCE--EE
Q psy8448         255 SDGTVKMWNLKTTECT-STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDF--LC  330 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v--~~  330 (482)
                      .||.|++||+++++.. ..+..  .|..+|.+++|+|++ .++++++ ++.|++||++ ++.+..+.....+...+  .+
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT  265 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred             CCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceE
Confidence            9999999999999876 56651  388999999999998 8888888 5599999994 44443333221112223  46


Q ss_pred             EEEcCCCCEEEEEeC-CcEEEEEee
Q psy8448         331 CTTSPRGEWIYCVGE-DMVLVVRLI  354 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~-dg~i~iw~~  354 (482)
                      ++|+|+|++|++++. |+.+++|++
T Consensus       266 ~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          266 YDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEecCCCCcEEEEEE
Confidence            999999999999998 999996544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=9.7e-34  Score=269.68  Aligned_cols=256  Identities=18%  Similarity=0.239  Sum_probs=207.7

Q ss_pred             cccccccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCC----------CeEeEEeecccCCCeEEEEEccCCC-EEEEEEC
Q psy8448         146 FMLMEEAVMSLAYSRD-SEMLASGSQSGKVKIWKIAT----------GQCLRKLEKAHSLGVTCIQFSRDNS-QILTASF  213 (482)
Q Consensus       146 ~~~h~~~i~~l~~~~~-~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~  213 (482)
                      ...|.+.|++++|+|+ +.+|++++.||.|++||+.+          ......+ ..|...|.+++|+|++. +|++|+.
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            4568899999999997 68999999999999999986          4566666 68999999999999988 9999999


Q ss_pred             CCeEEEEeCCCCce-------EEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceeeeeeccCCCccc
Q psy8448         214 DTYVRIHGLKSGKM-------LKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTT---ECTSTFKSLGASDIA  282 (482)
Q Consensus       214 dg~i~i~d~~~~~~-------~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~  282 (482)
                      ||.|++||+..+..       ...+.+|...|.+++|+| ++..|++++.||.|++||++++   +....+.   .|...
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~  279 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---AHTAE  279 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE---CCSSC
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee---cCCCC
Confidence            99999999987432       456678999999999999 7789999999999999999987   3455554   78899


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCCC-EEEEEeCCcEEEEEeehhhhh
Q psy8448         283 VNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVGEDMVLVVRLIQQYLK  359 (482)
Q Consensus       283 v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~  359 (482)
                      |++++|+|++..++++++.||.|++||++  +..+..+..+   ...|.+++|+|+++ +|++++.||.|+||++.....
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h---~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH---KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC---SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC---CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            99999999996789999999999999994  4556666654   77899999999985 689999999999776642110


Q ss_pred             hhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccc
Q psy8448         360 ESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQ  439 (482)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (482)
                      ....      -+...+                                                          ...+..
T Consensus       357 ~~~~------~~~~~~----------------------------------------------------------~~~~~~  372 (430)
T 2xyi_A          357 EQST------EDAEDG----------------------------------------------------------PPELLF  372 (430)
T ss_dssp             CCCH------HHHHHC----------------------------------------------------------CTTEEE
T ss_pred             ccCc------cccccC----------------------------------------------------------CcceEE
Confidence            0000      000000                                                          000123


Q ss_pred             cCcccccccCcceecccceeeccccCCcc-eEEEEecCceeecC
Q psy8448         440 TDPMIFMKQHEPEVHEKLVIGLTHHPHQN-LLGTYSEDGLLRFS  482 (482)
Q Consensus       440 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~i~iW  482 (482)
                                .+.+|...|++++|+|+++ +|++++.||.|+||
T Consensus       373 ----------~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          373 ----------IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW  406 (430)
T ss_dssp             ----------ECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             ----------EcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence                      6678999999999999999 89999999999998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=250.64  Aligned_cols=256  Identities=21%  Similarity=0.364  Sum_probs=217.0

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++.+.+|+.....     .......|...|.+++|+|++++|++|+.||.|++|++......     .....+.+|...
T Consensus        37 ~dg~v~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-----~~~~~~~~~~~~  106 (313)
T 3odt_A           37 RDGTVRLWSKDDQW-----LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE-----DPLYTLIGHQGN  106 (313)
T ss_dssp             TTSEEEEEEESSSE-----EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS-----CC-CEECCCSSC
T ss_pred             cCCcEEEEECCCCE-----EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC-----CcccchhhcccC
Confidence            36778888874432     22334488999999999999999999999999999999865422     122234557899


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEe
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEF  231 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~  231 (482)
                      |.+++|  +++++++++.||.|++||  .++....+ ..|...+.+++|+| ++.++++++.|+.|++||  ..+....+
T Consensus       107 i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~  179 (313)
T 3odt_A          107 VCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTF  179 (313)
T ss_dssp             EEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEE
T ss_pred             EEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEE
Confidence            999999  577999999999999999  66667776 67999999999998 899999999999999999  45666777


Q ss_pred             ec-cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         232 RG-HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       232 ~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                      .. |...+.+++|+|++. +++++.||.|++||+++++.+..+.   .|...|.+++|+|++  .+++++.|+.|++||+
T Consensus       180 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~  253 (313)
T 3odt_A          180 SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE---GHESFVYCIKLLPNG--DIVSCGEDRTVRIWSK  253 (313)
T ss_dssp             CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTS--CEEEEETTSEEEEECT
T ss_pred             eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh---cCCceEEEEEEecCC--CEEEEecCCEEEEEEC
Confidence            76 899999999999988 9999999999999999999888887   788999999999997  4889999999999999


Q ss_pred             -CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         311 -QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       311 -~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                       +++.+..+..+   ...+.+++|+|+++ +++++.||.|++|+++
T Consensus       254 ~~~~~~~~~~~~---~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          254 ENGSLKQVITLP---AISIWSVDCMSNGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             TTCCEEEEEECS---SSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred             CCCceeEEEecc---CceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence             67777777655   67899999999998 6679999999977665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=261.11  Aligned_cols=278  Identities=21%  Similarity=0.304  Sum_probs=218.8

Q ss_pred             CC-CCceeec--cCCccccccccccccccccce--------eeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCC
Q psy8448          64 LP-PGTTIDL--FRGKAAMKDQEEEKYPTQLSK--------QIKFGSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTT  131 (482)
Q Consensus        64 ~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~  131 (482)
                      .| ++..++.  .++.+.+|+............        ....+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus        52 s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  131 (408)
T 4a11_B           52 EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT  131 (408)
T ss_dssp             CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT
T ss_pred             ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC
Confidence            35 5655544  367788998776544333221        11136999999999999 788999999999999999999


Q ss_pred             CceeeccccccccccccccccEEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-E
Q psy8448         132 GKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-Q  207 (482)
Q Consensus       132 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~  207 (482)
                      ++....+.         +...+.++.|+|.   +.++++++.||.|++||+++++.+..+ ..|...|.+++|+|+++ .
T Consensus       132 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l  201 (408)
T 4a11_B          132 LQTADVFN---------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYI  201 (408)
T ss_dssp             TEEEEEEE---------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTE
T ss_pred             Cccceecc---------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcE
Confidence            88766554         2467999999984   449999999999999999999988888 68999999999999998 5


Q ss_pred             EEEEECCCeEEEEeCCCCc-eEEEe---------------eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q psy8448         208 ILTASFDTYVRIHGLKSGK-MLKEF---------------RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS  271 (482)
Q Consensus       208 l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  271 (482)
                      +++++.||.|++||++++. .+..+               ..|...|.+++|+|++++|++++.||.|++||+++++...
T Consensus       202 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  281 (408)
T 4a11_B          202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL  281 (408)
T ss_dssp             EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred             EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce
Confidence            8899999999999998775 33333               5688999999999999999999999999999999987654


Q ss_pred             eeeccC--CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE
Q psy8448         272 TFKSLG--ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV  348 (482)
Q Consensus       272 ~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~  348 (482)
                      .+....  .....+ ...+.......+++++.++.|++||+ +++.+..+..+   ...|.+++|+|++++|++++.||.
T Consensus       282 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          282 VNYGKVCNNSKKGL-KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH---YKTVDCCVFQSNFQELYSGSRDCN  357 (408)
T ss_dssp             CCCCCCCCCCSSCC-CCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC---SSCEEEEEEETTTTEEEEEETTSC
T ss_pred             eccccccccccccc-eeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC---CCeEEEEEEcCCCCEEEEECCCCe
Confidence            433111  111112 22233333367778888999999999 67888888765   788999999999999999999999


Q ss_pred             EEEEeeh
Q psy8448         349 LVVRLIQ  355 (482)
Q Consensus       349 i~iw~~~  355 (482)
                      |++|+++
T Consensus       358 i~iw~~~  364 (408)
T 4a11_B          358 ILAWVPS  364 (408)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCC
Confidence            9955443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=271.37  Aligned_cols=273  Identities=13%  Similarity=0.212  Sum_probs=208.5

Q ss_pred             cCCcccccccccccc------ccccceeeecCCC------------CcEEEEEEcCCC--CEEEEEeCCCeEEEEecCCC
Q psy8448          73 FRGKAAMKDQEEEKY------PTQLSKQIKFGSK------------SHVECARFSPDG--QYLITGSVDGFIEVWNFTTG  132 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~------~~~~~~~~~~~h~------------~~v~~~~~s~~~--~~l~s~~~dg~v~iwd~~~~  132 (482)
                      .++.+.+|+......      ........+.+|.            ..|++++|+|++  .+|++++.||.|++||+.++
T Consensus        48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~  127 (447)
T 3dw8_B           48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER  127 (447)
T ss_dssp             TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred             CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence            367788888765431      1111223445898            889999999998  79999999999999999765


Q ss_pred             ceeec-------------------ccc------------ccc-cccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448         133 KIRKD-------------------LKY------------QAQ-DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA  180 (482)
Q Consensus       133 ~~~~~-------------------~~~------------~~~-~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~  180 (482)
                      +....                   +..            ... ....+|...|++++|+|++++|++| .|+.|++||++
T Consensus       128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~  206 (447)
T 3dw8_B          128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLE  206 (447)
T ss_dssp             EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETT
T ss_pred             cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECC
Confidence            43211                   000            000 1135689999999999999999998 79999999998


Q ss_pred             CC-eEeEEe------ecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCce----EEEeecccc------------
Q psy8448         181 TG-QCLRKL------EKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKM----LKEFRGHSS------------  236 (482)
Q Consensus       181 ~~-~~~~~~------~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~------------  236 (482)
                      +. +....+      ...|...|.+++|+|++ .+|++|+.||.|++||+++++.    +..+..|..            
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (447)
T 3dw8_B          207 ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIIS  286 (447)
T ss_dssp             EEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTT
T ss_pred             CCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCc
Confidence            44 334322      25788999999999998 9999999999999999999886    678887776            


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccc---------------eeEEEEcCCCCCEEEEEe
Q psy8448         237 FVNDITFTADGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIA---------------VNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       237 ~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~---------------v~~i~~~~~~~~~l~~~~  300 (482)
                      .|.+++|+|++++|++++. +.|++||+++ ++++..+.   .|...               +..++|+|++ .++++++
T Consensus       287 ~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s  361 (447)
T 3dw8_B          287 SISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ---VHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGS  361 (447)
T ss_dssp             CEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE---SCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEEC
T ss_pred             eEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee---ccccccccccccccccccccceEEEECCCC-CEEEEec
Confidence            8999999999999999999 9999999997 77777776   44321               3349999998 8899999


Q ss_pred             CCCeEEEEEcCCcEEEEecCCc------------------------------ccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         301 KTNTVVIMNMQGQIVRSLSSGK------------------------------REGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       301 ~d~~i~i~d~~~~~~~~~~~~~------------------------------~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      .||.|++||+.......+..+.                              .....|..++|+|++++|++++.++ ++
T Consensus       362 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~  440 (447)
T 3dw8_B          362 YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LY  440 (447)
T ss_dssp             STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EE
T ss_pred             cCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-ee
Confidence            9999999999543333333221                              1245688999999999999998887 56


Q ss_pred             EE
Q psy8448         351 VR  352 (482)
Q Consensus       351 iw  352 (482)
                      +|
T Consensus       441 ~~  442 (447)
T 3dw8_B          441 IF  442 (447)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.4e-32  Score=254.50  Aligned_cols=233  Identities=16%  Similarity=0.204  Sum_probs=185.5

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEeCCCcEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVK  175 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~  175 (482)
                      .+|.+.|++++|+|||++|++|+.++ ++||++.+++......          ...+..+++.++++.+ ++++.|+.|+
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~v~   84 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE----------MRHLSKVRMLHRTNYVAFVTGVKEVVH   84 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE----------CSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee----------cCCeEEEEEcCCCCEEEEEECCccEEE
Confidence            48999999999999999999998765 7899988766543321          1247778888888877 4567889999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccccceeEEEEcCCCCEEEE--
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHSSFVNDITFTADGHSVLS--  252 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~--  252 (482)
                      +||+.+++.+..+.  +...|.+++|+++.  ++++. ++.|++||+.++ +.+..+..   +...+++++  .++++  
T Consensus        85 iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~s  154 (355)
T 3vu4_A           85 IWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSN  154 (355)
T ss_dssp             EEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEE
T ss_pred             EEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeC
Confidence            99999999988874  67789999998763  55544 889999999988 66666654   444566666  56666  


Q ss_pred             EeCCCcEEEEECCCCc----------------eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCe-EEEEEc-CCcE
Q psy8448         253 ASSDGTVKMWNLKTTE----------------CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT-VVIMNM-QGQI  314 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~-i~i~d~-~~~~  314 (482)
                      |+.+|.|++||+++++                +...+.   +|..+|.+++|+|++ .++++++.|++ |++||+ +++.
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcE
Confidence            5789999999999865                134444   899999999999998 89999999998 999999 5888


Q ss_pred             EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         315 VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       315 ~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +..+..+ .|...|.+++|+|+|++|++++.|+.|++|+++
T Consensus       231 ~~~~~~g-~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          231 VREFRRG-LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             EEEEECT-TCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             EEEEEcC-CCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            8888732 026899999999999999999999999988765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.8e-32  Score=261.67  Aligned_cols=233  Identities=11%  Similarity=0.149  Sum_probs=195.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ...+.+++|+|++.++++++.++.|++||+.+++.......   ..+.+|...|.+++|+|+++++++++.|+.|++||+
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP---EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC---HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc---ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence            34567999999888888888899999999999887653332   133457889999999999999999999999999999


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe----
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS----  254 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----  254 (482)
                      .+++....+ ..|...+.+++|+|+++.+++++ .|+.|++||+++++.+..+..+ ..+.+++|+|+++.+++++    
T Consensus       199 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~  276 (433)
T 3bws_A          199 KTLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSAS  276 (433)
T ss_dssp             TTCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESC
T ss_pred             CCceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCC
Confidence            999888888 57888999999999999886555 7999999999999988887754 4589999999999999888    


Q ss_pred             ----CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEE
Q psy8448         255 ----SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       255 ----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~  329 (482)
                          .|+.|++||+++++....+    .+...+.+++|+|++..++++++.++.|++||+. ++....+..    ...+.
T Consensus       277 ~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~----~~~~~  348 (433)
T 3bws_A          277 NQESGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV----FDKPN  348 (433)
T ss_dssp             TTCSCCEEEEEEETTTTEEEEEE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC----SSSEE
T ss_pred             ccccCCCeEEEEECCCCcEEeec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC----CCCCC
Confidence                5889999999998877665    4455788999999995577788999999999994 666665542    56789


Q ss_pred             EEEEcCCCCEEEEEeC
Q psy8448         330 CCTTSPRGEWIYCVGE  345 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~~  345 (482)
                      +++|+|+|++|++++.
T Consensus       349 ~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          349 TIALSPDGKYLYVSCR  364 (433)
T ss_dssp             EEEECTTSSEEEEEEC
T ss_pred             eEEEcCCCCEEEEEec
Confidence            9999999999998876

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.4e-32  Score=248.53  Aligned_cols=262  Identities=19%  Similarity=0.283  Sum_probs=213.6

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++.+.+|+.........+   ...+|...|++++|+|++++||+|+.||+|++||+++++.+..+.        +|...
T Consensus        43 ~D~tV~iWd~~tg~~~~~~---~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--------~h~~~  111 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--------SHSAR  111 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSC
T ss_pred             eCCEEEEEECCCCCEEEEE---EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec--------Cccce
Confidence            4677899987654322111   234788999999999999999999999999999999988766554        34667


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce----E
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM----L  228 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~  228 (482)
                      +.++.+  ++..+++++.++.+++|+.............|...+..+.++++++++++++.|+.|++||+++++.    .
T Consensus       112 ~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  189 (318)
T 4ggc_A          112 VGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL  189 (318)
T ss_dssp             EEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred             EEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce
Confidence            776555  5679999999999999998877554444478999999999999999999999999999999988753    3


Q ss_pred             EEeeccccceeEEEEcCCCCEE---EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE--eCCC
Q psy8448         229 KEFRGHSSFVNDITFTADGHSV---LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC--NKTN  303 (482)
Q Consensus       229 ~~~~~~~~~i~~l~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~--~~d~  303 (482)
                      .....+.+.|.++.++|++..+   ++++.++.|++||.+........    .+...+..+.|+|.+ ..++++  +.|+
T Consensus       190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~~~~sg~~d~  264 (318)
T 4ggc_A          190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHY-KELISGHGFAQN  264 (318)
T ss_dssp             EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEEETTT-TEEEEEECTTTC
T ss_pred             eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc----cceeeeeeeeecccc-cceEEEEEcCCC
Confidence            4455688899999999976543   35567899999999988876665    556789999999998 455544  3789


Q ss_pred             eEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         304 TVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       304 ~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      .|++||+ +++.+..+..|   ...|++++|+|+|++|++|+.||.|+||++.
T Consensus       265 ~i~iwd~~~~~~~~~l~gH---~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          265 QLVIWKYPTMAKVAELKGH---TSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             CEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEEECCCCcEEEEEcCC---CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            9999999 68888888765   7899999999999999999999999988764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-33  Score=280.45  Aligned_cols=250  Identities=20%  Similarity=0.233  Sum_probs=205.2

Q ss_pred             ccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEeEEeecccCCCeEEEEEccC--CCEEEEEECCCeEEEE
Q psy8448         145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA--TGQCLRKLEKAHSLGVTCIQFSRD--NSQILTASFDTYVRIH  220 (482)
Q Consensus       145 ~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i~  220 (482)
                      .+.+|.+.|++++|+|++++|++|+.||.|++||+.  +++....+ .+|...|.+++|+|+  +.+|++|+.||.|++|
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            345789999999999999999999999999999998  44556666 689999999999987  9999999999999999


Q ss_pred             eCCCCc--eEEEeeccccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCC-----
Q psy8448         221 GLKSGK--MLKEFRGHSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPK-----  291 (482)
Q Consensus       221 d~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----  291 (482)
                      |+++++  .+..+.+|...|.+++|+|+  ++.+++++.||.|++||++++....... ...|...|.+++|+|.     
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-EECCSSCEEEEEECCCC----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-eecCCCceEEEEecCcccccc
Confidence            999987  67778889999999999999  9999999999999999999874332221 1278889999999995     


Q ss_pred             -------CCCEEEEEeCCCeEEEEEcC-C----cEEEEecCCcccCcCEEEEEEcCC---CCEEEEEeCCcEEEEEeehh
Q psy8448         292 -------NTEHFVVCNKTNTVVIMNMQ-G----QIVRSLSSGKREGGDFLCCTTSPR---GEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       292 -------~~~~l~~~~~d~~i~i~d~~-~----~~~~~~~~~~~~~~~v~~~~~~~~---g~~l~~~~~dg~i~iw~~~~  356 (482)
                             ++..+++++.||.|++||++ +    .....+..+   ...|.+++|+|+   +++|++++.||.|++|+   
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h---~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd---  235 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT---  235 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC---SSCEEEEEECCCCSSSEEEEEEESSSCEEEEE---
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC---CCcEEEEEeccCCCCCCEEEEEecCCEEEEec---
Confidence                   23899999999999999993 3    333444443   789999999999   99999999999999554   


Q ss_pred             hhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhh
Q psy8448         357 YLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSL  436 (482)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (482)
                                     ..++.....                          ..                            
T Consensus       236 ---------------~~~~~~~~~--------------------------~~----------------------------  246 (753)
T 3jro_A          236 ---------------QDNEQGPWK--------------------------KT----------------------------  246 (753)
T ss_dssp             ---------------ESSSSSCCB--------------------------CC----------------------------
T ss_pred             ---------------CCCCCCcce--------------------------eE----------------------------
Confidence                           443300000                          00                            


Q ss_pred             ccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         437 LRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       437 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                       ..          ....|...|++++|+|+|++|++|+.||.|++|
T Consensus       247 -~~----------~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vw  281 (753)
T 3jro_A          247 -LL----------KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  281 (753)
T ss_dssp             -BS----------SSSCCSSCCCCEEECTTTCCEEEECSSSCEECC
T ss_pred             -Ee----------ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEE
Confidence             11          445688899999999999999999999999999

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8e-32  Score=257.13  Aligned_cols=251  Identities=22%  Similarity=0.401  Sum_probs=213.1

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      .++.+.+|+......     ...+.+|...|.+++|  ++++|++|+.||.|++||+.+++....+.        +|...
T Consensus       151 ~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--------~h~~~  215 (435)
T 1p22_A          151 RDNTIKIWDKNTLEC-----KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--------HHCEA  215 (435)
T ss_dssp             SSSCEEEEESSSCCE-----EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC--------CCCSC
T ss_pred             CCCeEEEEeCCCCeE-----EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc--------CCCCc
Confidence            466788887654322     2334589999999999  78899999999999999999988765544        35789


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEe---EEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL---RKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      |.+++|++  .++++|+.||.|++||+.++...   ..+ .+|...|.+++|  +++++++|+.||.|++||+++++.+.
T Consensus       216 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~  290 (435)
T 1p22_A          216 VLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR  290 (435)
T ss_dssp             EEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEe-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence            99999974  59999999999999999887655   344 689999999999  67899999999999999999999999


Q ss_pred             EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         230 EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       230 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                      .+.+|...|.++.++  ++++++|+.||.|++||+++++++..+.   +|...|.+++|  ++ .++++++.||.|++||
T Consensus       291 ~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd  362 (435)
T 1p22_A          291 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DN-KRIVSGAYDGKIKVWD  362 (435)
T ss_dssp             EEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEC--CS-SEEEEEETTSCEEEEE
T ss_pred             EEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe---CCcCcEEEEEe--cC-CEEEEEeCCCcEEEEE
Confidence            999999999999994  6899999999999999999999888887   78899999999  44 7999999999999999


Q ss_pred             cC-Cc---------EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehh
Q psy8448         310 MQ-GQ---------IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQ  356 (482)
Q Consensus       310 ~~-~~---------~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~  356 (482)
                      +. +.         .+..+..+   ...|.+++|  ++.+|++++.||.|++|++..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          363 LVAALDPRAPAGTLCLRTLVEH---SGRVFRLQF--DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             HHHHTSTTSCTTTTEEEEECCC---SSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred             CCCCCCccccccchheeeccCC---CCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence            83 33         56666655   778999999  788999999999999887653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.3e-32  Score=258.54  Aligned_cols=239  Identities=11%  Similarity=0.076  Sum_probs=172.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEE----eecccCCCeEEEEEcc--------CCCEEEEEECCCeEEEE
Q psy8448         153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRK----LEKAHSLGVTCIQFSR--------DNSQILTASFDTYVRIH  220 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~i~~~~--------~~~~l~~~~~dg~i~i~  220 (482)
                      .....+.+++.+|++++.|++|++||+++++....    ...+|...|.+++|+|        ++++|++++.|++|++|
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            33344445667899999999999999988865432    1267999999999998        78899999999999999


Q ss_pred             eCCCCceEEEeeccccceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeeee----------------------ccC
Q psy8448         221 GLKSGKMLKEFRGHSSFVNDITFTADGH-SVLSASSDGTVKMWNLKTTECTSTFK----------------------SLG  277 (482)
Q Consensus       221 d~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------~~~  277 (482)
                      |++++.++..+..|...+.+++|+|++. +|++++.|++|++||+++++......                      ...
T Consensus       172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             ECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence            9999988888888999999999999874 79999999999999999876443221                      012


Q ss_pred             CCccceeEEEEc-CCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCccc---------------CcCEEEEEEcC--CCC
Q psy8448         278 ASDIAVNSIHLL-PKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKRE---------------GGDFLCCTTSP--RGE  338 (482)
Q Consensus       278 ~~~~~v~~i~~~-~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~---------------~~~v~~~~~~~--~g~  338 (482)
                      ++...+.++.|. |++ ..+++++.|+.+++||+ .++....+..+...               ........++|  ++.
T Consensus       252 ~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (393)
T 4gq1_A          252 GIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY  330 (393)
T ss_dssp             CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred             cccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence            566778899987 565 89999999999999999 34433333322100               01111223333  344


Q ss_pred             EEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhH
Q psy8448         339 WIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYE  418 (482)
Q Consensus       339 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  418 (482)
                      ++++|+.||.|+                  +|+..++                               ..          
T Consensus       331 ~~~sgs~Dg~V~------------------lwd~~~~-------------------------------~~----------  351 (393)
T 4gq1_A          331 FATAHSQHGLIQ------------------LINTYEK-------------------------------DS----------  351 (393)
T ss_dssp             EEEEETTTTEEE------------------EEETTCT-------------------------------TC----------
T ss_pred             EEEEECCCCEEE------------------EEECCCC-------------------------------cE----------
Confidence            677888999999                  6666665                               22          


Q ss_pred             HHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceee
Q psy8448         419 QVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLR  480 (482)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~  480 (482)
                                         ..          .+.+|..+|++++|+|||++||++++||.+.
T Consensus       352 -------------------~~----------~~~~~~~~V~svafspdG~~LA~as~~Gv~l  384 (393)
T 4gq1_A          352 -------------------NS----------IPIQLGMPIVDFCWHQDGSHLAIATEGSVLL  384 (393)
T ss_dssp             -------------------CE----------EEEECSSCEEEEEECTTSSEEEEEESSEEEE
T ss_pred             -------------------EE----------EecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence                               22          5567888999999999999999999888743

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.7e-31  Score=246.47  Aligned_cols=257  Identities=11%  Similarity=0.136  Sum_probs=210.5

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEec-CCCceeecccccccccccc--
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQ-YLITGSVDGFIEVWNF-TTGKIRKDLKYQAQDNFML--  148 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~--  148 (482)
                      .++.+.+|+..........  ....+|...|++++|+|+++ +|++|+.||.|++||+ .+++.         ..+.+  
T Consensus        31 ~d~~v~iw~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---------~~~~~~~   99 (342)
T 1yfq_A           31 WDGSLTVYKFDIQAKNVDL--LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF---------QALTNNE   99 (342)
T ss_dssp             TTSEEEEEEEETTTTEEEE--EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---------EECBSCC
T ss_pred             CCCeEEEEEeCCCCccccc--eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---------EeccccC
Confidence            3677888887654422222  22338999999999999999 9999999999999999 77654         12334  


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC---------CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448         149 MEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT---------GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI  219 (482)
Q Consensus       149 h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i  219 (482)
                      |...|.+++|+| +++|++++.|+.|++||+++         ++.+..+.  |...+.+++|+|++  +++++.|+.|++
T Consensus       100 ~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--l~~~~~d~~i~i  174 (342)
T 1yfq_A          100 ANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR--LIVGMNNSQVQW  174 (342)
T ss_dssp             CCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE--EEEEESTTEEEE
T ss_pred             CCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc--EEEEeCCCeEEE
Confidence            678999999999 99999999999999999987         66666553  88899999999887  999999999999


Q ss_pred             EeCCC-Cce--EEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCC------ceeeeeeccC------CCccce
Q psy8448         220 HGLKS-GKM--LKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTT------ECTSTFKSLG------ASDIAV  283 (482)
Q Consensus       220 ~d~~~-~~~--~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~------~~~~~v  283 (482)
                      ||+++ +..  ......|...|.+++|+| +++++++++.||.|++|+++..      +....+....      .+...|
T Consensus       175 ~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  254 (342)
T 1yfq_A          175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV  254 (342)
T ss_dssp             EESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCE
T ss_pred             EECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeE
Confidence            99998 543  334456888999999999 9999999999999999999886      6666665211      123499


Q ss_pred             eEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE-EE
Q psy8448         284 NSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV-LV  350 (482)
Q Consensus       284 ~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~-i~  350 (482)
                      .+++|+|++ .++++++.||.|++||+ +++.+..+..++  ...|.+++  |++++|++++.||. .+
T Consensus       255 ~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~~~--~~~~~l~s~s~Dg~~~~  318 (342)
T 1yfq_A          255 NSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIA--CSDNILCLATSDDTFKT  318 (342)
T ss_dssp             EEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEE--ECSSEEEEEEECTHHHH
T ss_pred             EEEEEcCCC-CEEEEecCCceEEEEcCccHhHhhhhhccc--CCCceEec--CCCCeEEEEecCCcccc
Confidence            999999998 78999999999999999 577777766542  67889998  99999999999998 44

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.3e-32  Score=254.96  Aligned_cols=240  Identities=14%  Similarity=0.138  Sum_probs=174.2

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--------CCCEEEEEeCCC
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--------DSEMLASGSQSG  172 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--------~~~~l~~~~~dg  172 (482)
                      ..+....+++++.+||+|+.|++|+|||+++++....   .....+.+|.+.|++++|+|        ++++|++|+.|+
T Consensus        90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~---~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ---HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             -------CCEEEEEEEEEETTSCEEEEEEETTEEEEE---EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             CCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee---eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            3333344445677899999999999999988765432   22335677999999999998        789999999999


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC-EEEEEECCCeEEEEeCCCCceEEEe--------------------
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFDTYVRIHGLKSGKMLKEF--------------------  231 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--------------------  231 (482)
                      +|++||+.++.....+ ..|...+.+++|+|++. +|++++.|+.|++||+++++.....                    
T Consensus       167 tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             EEEEEEEETTEEEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             eEEEEECCCCceeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            9999999988877777 57888999999999874 7999999999999999887643321                    


Q ss_pred             -----eccccceeEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcccee------------------EEE
Q psy8448         232 -----RGHSSFVNDITFT-ADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVN------------------SIH  287 (482)
Q Consensus       232 -----~~~~~~i~~l~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~------------------~i~  287 (482)
                           .+|...+.++.|. |+++.|++++.|+.+++||+..++....+.   .+...+.                  ...
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS---DSTMKLGPKNLLPNVQGISLFPSLLGAC  322 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCE
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe---eecCccccEEEccccccccccCcceeEE
Confidence                 3577788999987 799999999999999999998876554443   2222222                  233


Q ss_pred             EcCC-CCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         288 LLPK-NTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       288 ~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ++|. +..++++++.|+.|++||. +++.......+   ..+|.+++|+|||++||+++.+|.+.
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~---~~~V~svafspdG~~LA~as~~Gv~l  384 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL---GMPIVDFCWHQDGSHLAIATEGSVLL  384 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC---SSCEEEEEECTTSSEEEEEESSEEEE
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC---CCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            3443 3245667788999999999 56666655544   67899999999999999999887655

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.9e-30  Score=242.97  Aligned_cols=221  Identities=15%  Similarity=0.190  Sum_probs=181.6

Q ss_pred             CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEeEEeecc
Q psy8448         113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVKIWKIATGQCLRKLEKA  191 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~  191 (482)
                      .++++++.|+.|++||+.+++....+..+         ..+.+++|+|+++++ ++++.|+.|++||+.+++....+.  
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--   71 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVG---------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--   71 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS---------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecC---------CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--
Confidence            46788899999999999998877655433         458999999999977 566689999999999999888874  


Q ss_pred             cCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCce
Q psy8448         192 HSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV-LSASSDGTVKMWNLKTTEC  269 (482)
Q Consensus       192 ~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~i~d~~~~~~  269 (482)
                      +...+.+++|+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+++++.
T Consensus        72 ~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           72 AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            333899999999999886555 569999999999998888775 4568999999999987 6777899999999999988


Q ss_pred             eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe---C
Q psy8448         270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG---E  345 (482)
Q Consensus       270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~---~  345 (482)
                      ...+.   . ...+.+++|+|++..++++++.++.|++||+. ++....+..    ...+.+++|+|+|++|++++   .
T Consensus       151 ~~~~~---~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~  222 (391)
T 1l0q_A          151 INTVS---V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKY  222 (391)
T ss_dssp             EEEEE---C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSS
T ss_pred             EEEEe---c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec----CCCccceEECCCCCEEEEEecCcC
Confidence            87775   3 34568999999995455778889999999994 555555543    45688999999999999888   6


Q ss_pred             CcEEEEEe
Q psy8448         346 DMVLVVRL  353 (482)
Q Consensus       346 dg~i~iw~  353 (482)
                      ++.|++|+
T Consensus       223 ~~~v~~~d  230 (391)
T 1l0q_A          223 FNTVSMID  230 (391)
T ss_dssp             CCEEEEEE
T ss_pred             CCcEEEEE
Confidence            89999443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-31  Score=251.10  Aligned_cols=245  Identities=16%  Similarity=0.166  Sum_probs=201.6

Q ss_pred             CCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecC--CCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448          98 GSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFT--TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      +|.+.|++++|+|++++| ++|+.||.|+|||+.  +++....+..+      .|...|++++|+|++++|++++.+|.|
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~~g~v  173 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF------CFSKRPNAISIAEDDTTVIIADKFGDV  173 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE------ECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc------cCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence            678899999999999996 899999999999999  77766655432      246789999999999999999999999


Q ss_pred             EEEEcCCCeEeE----EeecccCCCeEEEEEccC---CCEEEEEECCCeEEEEeCCCCceEEE-eeccccceeEEEEcCC
Q psy8448         175 KIWKIATGQCLR----KLEKAHSLGVTCIQFSRD---NSQILTASFDTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTAD  246 (482)
Q Consensus       175 ~iwd~~~~~~~~----~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~  246 (482)
                      ++|++.+++...    .+ .+|...|.+++|+|+   +++|++++.|+.|++||+++++.+.. +.+|...|.+++|+ +
T Consensus       174 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d  251 (450)
T 2vdu_B          174 YSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-K  251 (450)
T ss_dssp             EEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-S
T ss_pred             EEEecCCcccccccceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-C
Confidence            999998876543    44 578899999999999   99999999999999999999988877 56899999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeeccC----------------------CCccceeEEEEcCCCCCEEEEEe-CCC
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECTSTFKSLG----------------------ASDIAVNSIHLLPKNTEHFVVCN-KTN  303 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------~~~~~v~~i~~~~~~~~~l~~~~-~d~  303 (482)
                      +++|++++.|+.|++||+++++++..+....                      .....+.+++|+|++ .++++++ .++
T Consensus       252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~  330 (450)
T 2vdu_B          252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATK  330 (450)
T ss_dssp             TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCC
Confidence            9999999999999999999999887775210                      224578999999998 7788877 899


Q ss_pred             eEEEEEc--C-C---cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC------CcEEEEEeeh
Q psy8448         304 TVVIMNM--Q-G---QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE------DMVLVVRLIQ  355 (482)
Q Consensus       304 ~i~i~d~--~-~---~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~------dg~i~iw~~~  355 (482)
                      .|++|++  . +   ..+..+..    ...+.+++|+|++.++++++.      +..|.+|.+.
T Consensus       331 ~i~iw~~~~~~~~~l~~~~~~~~----~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          331 CIIILEMSEKQKGDLALKQIITF----PYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEEEEECSSSTTCEEEEEEEEC----SSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             eEEEEEeccCCCCceeeccEecc----CCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            9999999  3 3   33444443    267999999996544444443      4557877543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-31  Score=244.45  Aligned_cols=261  Identities=10%  Similarity=0.078  Sum_probs=199.6

Q ss_pred             cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc--cccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA--QDNFMLME  150 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~h~  150 (482)
                      .++.+.+|+.........+.       ...|.++.|+|+   +++++.|++|++|+.........+....  .....+|.
T Consensus        56 ~Dg~v~iwd~~~~~~~~~~~-------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  125 (343)
T 3lrv_A           56 EDGALHFTQLKDSKTITTIT-------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA  125 (343)
T ss_dssp             ETTEEEEEEESSSSCEEEEE-------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS
T ss_pred             CCCcEEEEECCCCcEEEEEe-------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC
Confidence            47778888876544322221       466888889988   9999999999999876432111111110  01112356


Q ss_pred             ccEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE
Q psy8448         151 EAVMSLAYSR--DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML  228 (482)
Q Consensus       151 ~~i~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  228 (482)
                      ++|.+++|+|  +++++++++.||.|++||+++++........+...+.+++|+|++.+|++|+.||.|++||+++++.+
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence            8899999999  99999999999999999999998877664556678999999999999999999999999999999987


Q ss_pred             -EEeec-cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcccee--EEEEcCCCCCEEEEEeC-CC
Q psy8448         229 -KEFRG-HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVN--SIHLLPKNTEHFVVCNK-TN  303 (482)
Q Consensus       229 -~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~~~~l~~~~~-d~  303 (482)
                       ..+.. |..+|.+++|+|++.+|++++ ++.|++||+++++....+.....+...+.  +++|+|++ .++++++. |+
T Consensus       206 ~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~  283 (343)
T 3lrv_A          206 SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESN  283 (343)
T ss_dssp             CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS-SEEEEEETTTT
T ss_pred             ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC-CEEEEecCCCC
Confidence             78887 999999999999999999999 45999999999887666653333444444  69999999 88888888 99


Q ss_pred             eEEEEEcC-CcEEEEecCCcccCcCEEEEEEcC---CCCEEEEEeCCcEEEEE
Q psy8448         304 TVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSP---RGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       304 ~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~---~g~~l~~~~~dg~i~iw  352 (482)
                      .+++|++. +......       .++..++|.+   ++..+++++.||.+.++
T Consensus       284 ~i~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          284 SLTIYKFDKKTKNWTK-------DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EEEEEEECTTTCSEEE-------EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             cEEEEEEcccccceEe-------cCceeEecCccccccceeEEEecCCceEEE
Confidence            99999983 2211111       3567788888   88999999999999965

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=4.2e-30  Score=239.56  Aligned_cols=255  Identities=18%  Similarity=0.264  Sum_probs=196.1

Q ss_pred             ccccccccEEEEEEcCC---CCEEEEEeCCCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448         145 NFMLMEEAVMSLAYSRD---SEMLASGSQSGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH  220 (482)
Q Consensus       145 ~~~~h~~~i~~l~~~~~---~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~  220 (482)
                      .+.+|.+.|++++|+|+   +++|++|+.||.|++||+.+ +..+......|...|.+++|+|++++|++++.||.|++|
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  113 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW  113 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence            34557899999999998   69999999999999999987 555533337899999999999999999999999999999


Q ss_pred             eCCCCceEEEeeccccceeEEEE--cCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEE
Q psy8448         221 GLKSGKMLKEFRGHSSFVNDITF--TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVV  298 (482)
Q Consensus       221 d~~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  298 (482)
                      |+++++.+. +..|...|.+++|  +|++++|++++.||.|++||+++++.+..+.   .+ ..+.++.+.+   ..+++
T Consensus       114 d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~-~~~~~~~~~~---~~~~~  185 (368)
T 3mmy_A          114 DLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ---LP-ERCYCADVIY---PMAVV  185 (368)
T ss_dssp             ETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE---CS-SCEEEEEEET---TEEEE
T ss_pred             EcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe---cC-CCceEEEecC---CeeEE
Confidence            999988766 5569999999999  8999999999999999999999998888875   33 3566666665   57888


Q ss_pred             EeCCCeEEEEEcCCc--EEEEecCCcccCcCEEEEEEcCCCCE----EEEEeCCcEEEEEeehhhhhhhcccccceeeee
Q psy8448         299 CNKTNTVVIMNMQGQ--IVRSLSSGKREGGDFLCCTTSPRGEW----IYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQE  372 (482)
Q Consensus       299 ~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~g~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  372 (482)
                      ++.++.+.+|+++..  .........  .....++++.++...    +++++.||.+++|+++.....    .....+..
T Consensus       186 ~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~----~~~~~~~~  259 (368)
T 3mmy_A          186 ATAERGLIVYQLENQPSEFRRIESPL--KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA----KDNFTFKC  259 (368)
T ss_dssp             EEGGGCEEEEECSSSCEEEEECCCSC--SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH----HHSEEEEC
T ss_pred             EeCCCcEEEEEeccccchhhhccccc--cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc----ccceeeee
Confidence            999999999999533  333333322  445566666655544    999999999997766522110    00001111


Q ss_pred             cccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcce
Q psy8448         373 ETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPE  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (482)
                      ...           .                   ..                             ..          ...
T Consensus       260 ~~~-----------~-------------------~~-----------------------------~~----------~~~  270 (368)
T 3mmy_A          260 HRS-----------N-------------------GT-----------------------------NT----------SAP  270 (368)
T ss_dssp             SEE-----------C--------------------------------------------------------------CCC
T ss_pred             eec-----------c-------------------cc-----------------------------cc----------ccc
Confidence            100           0                   00                             11          345


Q ss_pred             ecccceeeccccCCcceEEEEecCceeecC
Q psy8448         453 VHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       453 ~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      +|...|++++|+|++++|++|+.||.|++|
T Consensus       271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  300 (368)
T 3mmy_A          271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFW  300 (368)
T ss_dssp             EEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             ccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence            677789999999999999999999999998

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=5.2e-29  Score=234.37  Aligned_cols=254  Identities=16%  Similarity=0.177  Sum_probs=203.1

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      ++.+.+|+.....    .... ..+| ..+.+++|+|++++| ++++.|+.|++||+.+++....+..+         ..
T Consensus        11 d~~v~v~d~~~~~----~~~~-~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~---------~~   75 (391)
T 1l0q_A           11 SDNISVIDVTSNK----VTAT-IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---------SS   75 (391)
T ss_dssp             TTEEEEEETTTTE----EEEE-EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---------SS
T ss_pred             CCEEEEEECCCCe----EEEE-eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---------CC
Confidence            5667778765432    2222 2244 458999999999987 67778999999999998877655433         47


Q ss_pred             EEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEE-EEEECCCeEEEEeCCCCceEEE
Q psy8448         153 VMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQI-LTASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~  230 (482)
                      +.+++|+|++++|++++ .++.|++||+.+++.+..+.  +...+.+++|+|+++.+ ++++.++.|++||+++++.+..
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            99999999999886555 67999999999998887773  44578999999999987 6777899999999999998888


Q ss_pred             eeccccceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe---CCCeEE
Q psy8448         231 FRGHSSFVNDITFTADGHSV-LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN---KTNTVV  306 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~  306 (482)
                      +..+ ..+.+++|+|+++.+ ++++.++.|++||+++++....+.    +...+.+++|+|++ ..+++++   .++.|+
T Consensus       154 ~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~  227 (391)
T 1l0q_A          154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVS  227 (391)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTS-SEEEEEEECSSCCEEE
T ss_pred             EecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCC-CEEEEEecCcCCCcEE
Confidence            8755 457999999999987 566788999999999998877764    45578999999998 6666666   789999


Q ss_pred             EEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEE-EEEeCCcEEEEEee
Q psy8448         307 IMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWI-YCVGEDMVLVVRLI  354 (482)
Q Consensus       307 i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l-~~~~~dg~i~iw~~  354 (482)
                      +||+ .++.+..+..+    ..+.+++|+|+|++| ++++.|+.|++|++
T Consensus       228 ~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          228 MIDTGTNKITARIPVG----PDPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             EEETTTTEEEEEEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEECCCCeEEEEEecC----CCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            9999 56666666653    357899999999988 56688999995544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=9.1e-30  Score=224.71  Aligned_cols=278  Identities=12%  Similarity=0.089  Sum_probs=176.7

Q ss_pred             cEEEEEEcCCCC---EEEEEeCCCeEEEEecCCC---ceeeccccccccccccccccEEEEEEcCCCCE-EEEEeCCCcE
Q psy8448         102 HVECARFSPDGQ---YLITGSVDGFIEVWNFTTG---KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM-LASGSQSGKV  174 (482)
Q Consensus       102 ~v~~~~~s~~~~---~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~-l~~~~~dg~i  174 (482)
                      .+.++.|-.-+-   -+++++ ...|++|+..++   +...+..+        |+.+|..+.+.||..- +.++-.+=.+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~  111 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHF--------AEVPVLQIVPVPDVYNLVCVALGNLEI  111 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEEC--------CSSCEEEECCCTTCCSCEEEEECSSSE
T ss_pred             EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEec--------cCceeEEEEEcCcccceeeeeeccccc
Confidence            355666655332   456666 578999999987   44444433        3556666666664322 2222111111


Q ss_pred             E-EEEc--CCC--e-EeEEeecccCCCeEEEEEccCCCEEEEEE--CCCeEEEEeC-CCCceEEEeeccccceeEEEEcC
Q psy8448         175 K-IWKI--ATG--Q-CLRKLEKAHSLGVTCIQFSRDNSQILTAS--FDTYVRIHGL-KSGKMLKEFRGHSSFVNDITFTA  245 (482)
Q Consensus       175 ~-iwd~--~~~--~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~i~d~-~~~~~~~~~~~~~~~i~~l~~~~  245 (482)
                      . ++-+  ...  . .......+|...+..+   ++++.+.++.  .|+.|++|++ .+++.+..+.+|...+..++|++
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~  188 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE  188 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred             cceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence            1 1111  000  0 0000101222223332   3454444433  5888999998 45788888889999999999999


Q ss_pred             ---CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEE------------EEEeCCCeEEEEEc
Q psy8448         246 ---DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHF------------VVCNKTNTVVIMNM  310 (482)
Q Consensus       246 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l------------~~~~~d~~i~i~d~  310 (482)
                         ++..|++++.|++|+|||+++++++.++.....+...+.+++|+|++ .++            ++|+.|++|++||.
T Consensus       189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~  267 (356)
T 2w18_A          189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINP  267 (356)
T ss_dssp             EETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEET
T ss_pred             cCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence               78999999999999999999999999987322233467788999988 554            56788999999999


Q ss_pred             -CCcEEEEecC--CcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccc
Q psy8448         311 -QGQIVRSLSS--GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGF  387 (482)
Q Consensus       311 -~~~~~~~~~~--~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (482)
                       +++.+..+..  ...+...+.+..++  +.++++++.|++|+                  +||+.+|            
T Consensus       268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIk------------------IWDl~tG------------  315 (356)
T 2w18_A          268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIA------------------IWDLLLG------------  315 (356)
T ss_dssp             TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEE------------------EEETTTC------------
T ss_pred             CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEE------------------EEECCCC------------
Confidence             5666554421  11223344444444  88999999999999                  7777777            


Q ss_pred             eeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccccee-eccccCC
Q psy8448         388 IADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVI-GLTHHPH  466 (482)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~  466 (482)
                                         ++                             ..          ++.+|...+. .++||||
T Consensus       316 -------------------k~-----------------------------l~----------tL~gH~~~vvs~vafSPD  337 (356)
T 2w18_A          316 -------------------QC-----------------------------TA----------LLPPVSDQHWSFVKWSGT  337 (356)
T ss_dssp             -------------------SE-----------------------------EE----------EECCC--CCCCEEEECSS
T ss_pred             -------------------cE-----------------------------EE----------EecCCCCCeEEEEEECCC
Confidence                               33                             33          6678877655 5899999


Q ss_pred             cceEEEEecCceeecC
Q psy8448         467 QNLLGTYSEDGLLRFS  482 (482)
Q Consensus       467 ~~~l~s~~~Dg~i~iW  482 (482)
                      |++||||+.|++||||
T Consensus       338 G~~LaSGS~D~TIklW  353 (356)
T 2w18_A          338 DSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             SSEEEEECTTSCEEEE
T ss_pred             CCEEEEEECCCcEEEe
Confidence            9999999999999999

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=4.1e-30  Score=237.62  Aligned_cols=274  Identities=12%  Similarity=0.183  Sum_probs=192.9

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeecc-cccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSP--DGQYLITGSVDGFIEVWNFTTGKIRKDL-KYQAQDNFMLME  150 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~h~  150 (482)
                      ++.+.+|+............ .+.+|...|++++|+|  ++++|++|+.||.|++||+.+++..... .......+..|.
T Consensus        32 dg~i~iw~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  110 (351)
T 3f3f_A           32 DQHIKVFKLDKDTSNWELSD-SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK  110 (351)
T ss_dssp             TSEEEEEEECSSSCCEEEEE-EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred             CCeEEEEECCCCCCcceecc-eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence            67788998775544333333 3348999999999999  6999999999999999999887532110 011223344578


Q ss_pred             ccEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCeEeEEee------------cccCCCeEEEEEccC---CCEEEEEEC
Q psy8448         151 EAVMSLAYSRD--SEMLASGSQSGKVKIWKIATGQCLRKLE------------KAHSLGVTCIQFSRD---NSQILTASF  213 (482)
Q Consensus       151 ~~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~v~~i~~~~~---~~~l~~~~~  213 (482)
                      ..|.+++|+|+  +++|++++.||.|++||+++++.+..+.            ..+...+.+++|+|+   +.++++++.
T Consensus       111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~  190 (351)
T 3f3f_A          111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL  190 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET
T ss_pred             CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC
Confidence            99999999999  9999999999999999998876543331            257788999999997   899999999


Q ss_pred             CCeEEEEeCCCCce--EEEeeccccceeEEEEcCCC----CEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEE
Q psy8448         214 DTYVRIHGLKSGKM--LKEFRGHSSFVNDITFTADG----HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIH  287 (482)
Q Consensus       214 dg~i~i~d~~~~~~--~~~~~~~~~~i~~l~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  287 (482)
                      ++.+.+|+...++.  +..+.+|...|.+++|+|++    ++|++++.||.|++||++++.......   ..........
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~  267 (351)
T 3f3f_A          191 EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE---ESLTNSNMFD  267 (351)
T ss_dssp             TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------
T ss_pred             CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC---CcccceeccC
Confidence            99998888887765  67788899999999999998    899999999999999998765443332   2222223333


Q ss_pred             EcCCCCCEEEEE----eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         288 LLPKNTEHFVVC----NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       288 ~~~~~~~~l~~~----~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ..+.. .....+    .....+.+|+. ..+.+..+..+   ...|++++|+|++++|++++.||.|++|++.
T Consensus       268 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          268 NSADV-DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH---NGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             ------------------------CCSEEEEEEEEECTT---SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCccc-ccccccccccccceeeeecccccccEEEEEecc---cccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence            33322 222222    22334445544 34555555544   7889999999999999999999999966654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=2.9e-28  Score=232.53  Aligned_cols=261  Identities=12%  Similarity=0.114  Sum_probs=210.3

Q ss_pred             CccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE
Q psy8448          75 GKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM  154 (482)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~  154 (482)
                      +.+.+|+................+|...|.+++|+|+++++++++.|+.|++||+.+++....+..        |...+.
T Consensus       144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~--------~~~~~~  215 (433)
T 3bws_A          144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL--------TGKWSK  215 (433)
T ss_dssp             SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC--------SSSSEE
T ss_pred             CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC--------CCCCee
Confidence            457778765443322111113348999999999999999999999999999999998877665542        467899


Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE--------CCCeEEEEeCCCC
Q psy8448         155 SLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS--------FDTYVRIHGLKSG  225 (482)
Q Consensus       155 ~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------~dg~i~i~d~~~~  225 (482)
                      +++|+|+++++++++ .|+.|++||+.+++....+.  ....+.+++|+|+++++++++        .|+.|++||++++
T Consensus       216 ~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          216 ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence            999999999886554 79999999999998887763  345699999999999999888        5889999999999


Q ss_pred             ceEEEeeccccceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC---
Q psy8448         226 KMLKEFRGHSSFVNDITFTADGHSV-LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK---  301 (482)
Q Consensus       226 ~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---  301 (482)
                      +.+..+. +...+.+++|+|+++.+ ++++.++.|++||+++++....+.    +...+.+++|+|++ ..+++++.   
T Consensus       294 ~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg-~~l~~~~~~~~  367 (433)
T 3bws_A          294 KLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP----VFDKPNTIALSPDG-KYLYVSCRGPN  367 (433)
T ss_dssp             EEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTS-SEEEEEECCCC
T ss_pred             cEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec----CCCCCCeEEEcCCC-CEEEEEecCCC
Confidence            8776653 56688999999999755 556889999999999988877763    45678999999998 66666665   


Q ss_pred             ------------CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC-CcEEEEEeeh
Q psy8448         302 ------------TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE-DMVLVVRLIQ  355 (482)
Q Consensus       302 ------------d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~-dg~i~iw~~~  355 (482)
                                  ||.|++||. +++.+..+..    ...+.+++|+|+|++|++++. |+.|++|+++
T Consensus       368 ~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          368 HPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA----GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ccccccccccccceEEEEEECCCCcEEEEecC----CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                        579999999 5666666654    356899999999999998875 9999988765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.8e-29  Score=231.50  Aligned_cols=228  Identities=9%  Similarity=0.096  Sum_probs=178.4

Q ss_pred             ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEE-EEEECCCeEEEEeCCCC
Q psy8448         147 MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQI-LTASFDTYVRIHGLKSG  225 (482)
Q Consensus       147 ~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~  225 (482)
                      ..|...|++++|+|++++|++|+.++ +++||+.+++......   ...+..+++.++++.+ ++++.|+.|++||++++
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~   91 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE---MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK   91 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE---CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee---cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence            34688999999999999999988775 7899998877665542   2257888898888877 56777899999999999


Q ss_pred             ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeeeeccCCCccceeEEEEcCCCCCEEEE--EeCC
Q psy8448         226 KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT-ECTSTFKSLGASDIAVNSIHLLPKNTEHFVV--CNKT  302 (482)
Q Consensus       226 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~--~~~d  302 (482)
                      +.+..+. +...|.+++++++.  ++++ .++.|++||+.++ +.+..+.   .   +...+++++   ..+++  ++.+
T Consensus        92 ~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~---~---~~~~~~~s~---~~la~~sg~~~  158 (355)
T 3vu4_A           92 QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDI---R---FGGVCEFSN---GLLVYSNEFNL  158 (355)
T ss_dssp             EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCE---E---EEEEEEEET---TEEEEEESSCT
T ss_pred             cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEec---c---CCceEEEEc---cEEEEeCCCcC
Confidence            9998887 67789999998763  4444 4789999999988 6666654   2   444556666   34554  5889


Q ss_pred             CeEEEEEcCCcE-----------------EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcE-EEEEeehhhhhhhccc
Q psy8448         303 NTVVIMNMQGQI-----------------VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMV-LVVRLIQQYLKESNLM  364 (482)
Q Consensus       303 ~~i~i~d~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~-i~iw~~~~~~~~~~~~  364 (482)
                      |.|++||+....                 +..+..|   ...|.+++|+|+|++|++|+.|+. |+              
T Consensus       159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h---~~~v~~~~~s~~g~~l~s~s~d~~~v~--------------  221 (355)
T 3vu4_A          159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH---TNPIKMVRLNRKSDMVATCSQDGTIIR--------------  221 (355)
T ss_dssp             TCEEEEECCC------------------CCEEECCC---SSCEEEEEECTTSSEEEEEETTCSEEE--------------
T ss_pred             cEEEEEECCCCCccccccccccccccCcccEEEEcc---CCceEEEEECCCCCEEEEEeCCCCEEE--------------
Confidence            999999995322                 4455544   789999999999999999999998 99              


Q ss_pred             ccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCccc
Q psy8448         365 KTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMI  444 (482)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (482)
                          +|+..++                               +.                             ..     
T Consensus       222 ----iwd~~~~-------------------------------~~-----------------------------~~-----  232 (355)
T 3vu4_A          222 ----VFKTEDG-------------------------------VL-----------------------------VR-----  232 (355)
T ss_dssp             ----EEETTTC-------------------------------CE-----------------------------EE-----
T ss_pred             ----EEECCCC-------------------------------cE-----------------------------EE-----
Confidence                5666555                               22                             22     


Q ss_pred             ccccCcce-e-cccceeeccccCCcceEEEEecCceeecC
Q psy8448         445 FMKQHEPE-V-HEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       445 ~~~~~~~~-~-h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                           .+. + |...|++++|+|++++|++++.||+|+||
T Consensus       233 -----~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw  267 (355)
T 3vu4_A          233 -----EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF  267 (355)
T ss_dssp             -----EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred             -----EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence                 444 4 88999999999999999999999999998

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.9e-28  Score=215.21  Aligned_cols=269  Identities=14%  Similarity=0.052  Sum_probs=179.4

Q ss_pred             eeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEecC--CC-ceeecccccccc
Q psy8448          70 IDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGS--VDGFIEVWNFT--TG-KIRKDLKYQAQD  144 (482)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~v~iwd~~--~~-~~~~~~~~~~~~  144 (482)
                      +......+.+|...... .=. ..+...+|..+|..+.+.||..-|+...  .=..-.++-+.  .. +.......    
T Consensus        58 ~~~~~~~v~lw~~~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~----  131 (356)
T 2w18_A           58 ITACEDVVSLWKALDAW-QWE-KLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLL----  131 (356)
T ss_dssp             EEEESSEEEEEEESSSS-BEE-EEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEE----
T ss_pred             EEeccceEEEcccCCCc-cce-eeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEE----
Confidence            44456667777765531 112 2234448888888888888654333221  11111111111  00 00000000    


Q ss_pred             ccccccccEEEEEEcCCCCEEEEEe--CCCcEEEEEc-CCCeEeEEeecccCCCeEEEEEcc---CCCEEEEEECCCeEE
Q psy8448         145 NFMLMEEAVMSLAYSRDSEMLASGS--QSGKVKIWKI-ATGQCLRKLEKAHSLGVTCIQFSR---DNSQILTASFDTYVR  218 (482)
Q Consensus       145 ~~~~h~~~i~~l~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~  218 (482)
                       ..+|...|..+   ++++++.+++  .|+.|++|++ .+++.+..+ ..|...+..++|++   ++..|++++.|++|+
T Consensus       132 -s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk  206 (356)
T 2w18_A          132 -KSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIV  206 (356)
T ss_dssp             -EEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred             -eCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence             01123334443   4565555543  5999999999 457777766 57888999999999   779999999999999


Q ss_pred             EEeCCCCceEEEeecccc---ceeEEEEcCCCCEE------------EEEeCCCcEEEEECCCCceeeeeec--cCCCcc
Q psy8448         219 IHGLKSGKMLKEFRGHSS---FVNDITFTADGHSV------------LSASSDGTVKMWNLKTTECTSTFKS--LGASDI  281 (482)
Q Consensus       219 i~d~~~~~~~~~~~~~~~---~i~~l~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~  281 (482)
                      +||++++++++++.+|..   .+.+++|+|++.++            ++|+.|++|++||..+++.+..+..  ..+|..
T Consensus       207 IWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~  286 (356)
T 2w18_A          207 IWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG  286 (356)
T ss_dssp             EEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC
T ss_pred             EEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc
Confidence            999999999999986543   57788999999876            5677899999999999987765421  124444


Q ss_pred             ceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         282 AVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       282 ~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      .+.+..++  + .++++++.|++|+|||+ +++.+.++..+.  ...+.+++|+|||++|++|+.|++|+||++
T Consensus       287 ~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~--~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          287 RFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVS--DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCC--CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            44444444  4 68999999999999999 688888887653  223446899999999999999999998864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=5.8e-27  Score=221.23  Aligned_cols=272  Identities=15%  Similarity=0.091  Sum_probs=197.2

Q ss_pred             hhhhhccCCCC-CCceeeccCC----ccccccc--cccccccccceeeecCCCCcEEEEEEcC--------------CCC
Q psy8448          55 LKWQQHQGLLP-PGTTIDLFRG----KAAMKDQ--EEEKYPTQLSKQIKFGSKSHVECARFSP--------------DGQ  113 (482)
Q Consensus        55 ~~~~~~~~~~~-~g~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------------~~~  113 (482)
                      .+|.....-.. .|......+|    .+.+|+.  ....   .+....+.+|...+..+++++              .+.
T Consensus        68 ~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~  144 (415)
T 2hqs_A           68 AAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT---VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT  144 (415)
T ss_dssp             HHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTC---EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC
T ss_pred             HHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC---EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence            45665443322 3332222344    6788887  4433   222233458888888888775              155


Q ss_pred             EEEEEeCC------CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCeE
Q psy8448         114 YLITGSVD------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG---KVKIWKIATGQC  184 (482)
Q Consensus       114 ~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~  184 (482)
                      .++.++.+      +.|++||+..+. ...        +.+|...+.+++|+|+|++|++++.++   .|++||+.+++.
T Consensus       145 ~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~--------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~  215 (415)
T 2hqs_A          145 RIAYVVQTNGGQFPYELRVSDYDGYN-QFV--------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV  215 (415)
T ss_dssp             EEEEEEECSSSSCCEEEEEEETTSCS-CEE--------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             EEEEEEecCCCCccceEEEEcCCCCC-CEE--------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE
Confidence            66666544      799999997433 222        233568899999999999999999875   999999998877


Q ss_pred             eEEeecccCCCeEEEEEccCCCEEE-EEECCC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-CC--c
Q psy8448         185 LRKLEKAHSLGVTCIQFSRDNSQIL-TASFDT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-DG--T  258 (482)
Q Consensus       185 ~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg--~  258 (482)
                      .. + ..+...+.+++|+|+|++|+ +++.++  .|++||+++++. ..+..|...+.+++|+|+|++|++++. ++  .
T Consensus       216 ~~-l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~  292 (415)
T 2hqs_A          216 RQ-V-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  292 (415)
T ss_dssp             EE-E-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             EE-e-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence            54 3 45778899999999999888 565555  499999988876 567778889999999999999998886 44  6


Q ss_pred             EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC---CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcC
Q psy8448         259 VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT---NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       259 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  335 (482)
                      |.+||+.+++... +.   .+...+.+++|+|++ +++++++.+   ..|.+||+.+.....+..+    ..+.+++|+|
T Consensus       293 i~~~d~~~~~~~~-l~---~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~----~~~~~~~~sp  363 (415)
T 2hqs_A          293 VYKVNINGGAPQR-IT---WEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQVLSST----FLDETPSLAP  363 (415)
T ss_dssp             EEEEETTSSCCEE-CC---CSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEEECCCS----SSCEEEEECT
T ss_pred             EEEEECCCCCEEE-Ee---cCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCEEEecCC----CCcCCeEEcC
Confidence            7888998876432 22   456688899999999 666665543   5899999965444555543    2789999999


Q ss_pred             CCCEEEEEeCCc---EEE
Q psy8448         336 RGEWIYCVGEDM---VLV  350 (482)
Q Consensus       336 ~g~~l~~~~~dg---~i~  350 (482)
                      +|++|++++.++   .|+
T Consensus       364 dg~~l~~~s~~~~~~~l~  381 (415)
T 2hqs_A          364 NGTMVIYSSSQGMGSVLN  381 (415)
T ss_dssp             TSSEEEEEEEETTEEEEE
T ss_pred             CCCEEEEEEcCCCccEEE
Confidence            999999888766   566

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2.7e-27  Score=223.48  Aligned_cols=234  Identities=13%  Similarity=0.197  Sum_probs=173.9

Q ss_pred             CCcEEEEEEcCCC-CEEEEEe----CCC----eEEEEec--CCCceeeccccccccccccccccEEEEEEcC--------
Q psy8448         100 KSHVECARFSPDG-QYLITGS----VDG----FIEVWNF--TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--------  160 (482)
Q Consensus       100 ~~~v~~~~~s~~~-~~l~s~~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--------  160 (482)
                      ...+...+|++.| +++++|+    .+|    .|++||+  .+++.+....      +.+|...+..+++++        
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~  135 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS------YKVNKQWLRYAGHTASDEVFEKL  135 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE------EEECGGGHHHHHHHHHHHHHHHH
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE------EEcChhHHHHHHHHHHHHHHHHH
Confidence            3567788898876 4566776    567    8999999  8887653321      122344555555553        


Q ss_pred             ------CCCEEEEEeCC------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC---eEEEEeCCCC
Q psy8448         161 ------DSEMLASGSQS------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT---YVRIHGLKSG  225 (482)
Q Consensus       161 ------~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~  225 (482)
                            .+..++.++.+      +.|++||+.. .....+ ..|...+.+++|+|+|++|++++.++   .|++||++++
T Consensus       136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg  213 (415)
T 2hqs_A          136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG  213 (415)
T ss_dssp             HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             cCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence                  25667766654      7999999974 445555 56888999999999999999999885   9999999998


Q ss_pred             ceEEEeeccccceeEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-
Q psy8448         226 KMLKEFRGHSSFVNDITFTADGHSVL-SASSDGT--VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-  301 (482)
Q Consensus       226 ~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-  301 (482)
                      +.. .+..|...+.+++|+|+|+.|+ +++.++.  |++||+++++.. .+.   .+...+.+++|+|++ ..+++++. 
T Consensus       214 ~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~---~~~~~~~~~~~spdg-~~l~~~s~~  287 (415)
T 2hqs_A          214 AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT---DGRSNNTEPTWFPDS-QNLAFTSDQ  287 (415)
T ss_dssp             CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC---CCSSCEEEEEECTTS-SEEEEEECT
T ss_pred             cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc---CCCCcccceEECCCC-CEEEEEECC
Confidence            875 4666888999999999999888 5665554  999999988753 333   667789999999999 66666664 


Q ss_pred             CC--eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC---cEEE
Q psy8448         302 TN--TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED---MVLV  350 (482)
Q Consensus       302 d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d---g~i~  350 (482)
                      ++  .|.+||+.+.....+..+   ...+.+++|+|+|++|++++.+   ..|+
T Consensus       288 ~g~~~i~~~d~~~~~~~~l~~~---~~~~~~~~~spdG~~l~~~~~~~g~~~i~  338 (415)
T 2hqs_A          288 AGRPQVYKVNINGGAPQRITWE---GSQNQDADVSSDGKFMVMVSSNGGQQHIA  338 (415)
T ss_dssp             TSSCEEEEEETTSSCCEECCCS---SSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEecC---CCcccCeEECCCCCEEEEEECcCCceEEE
Confidence            45  677788865444444433   4578899999999999988764   4666

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=8.7e-26  Score=219.58  Aligned_cols=259  Identities=17%  Similarity=0.209  Sum_probs=195.4

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEec--CCCceeeccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNF--TTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      ++.+.+|+....    +....+..+|.  +.+++|+|||++|++++.|++|.+||+  .+++.+..+..         ..
T Consensus       158 d~~V~v~D~~t~----~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~---------g~  222 (543)
T 1nir_A          158 AGQIALVDGDSK----KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI---------GI  222 (543)
T ss_dssp             GTEEEEEETTTC----CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC---------CS
T ss_pred             CCeEEEEECCCc----eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec---------CC
Confidence            345666664432    23344444554  889999999999999999999999999  77776665542         24


Q ss_pred             cEEEEEEcC----CCCEEEEEe-CCCcEEEEEcCCCeEeEEeecc---------c-CCCeEEEEEccCCCE-EEEEECCC
Q psy8448         152 AVMSLAYSR----DSEMLASGS-QSGKVKIWKIATGQCLRKLEKA---------H-SLGVTCIQFSRDNSQ-ILTASFDT  215 (482)
Q Consensus       152 ~i~~l~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~---------~-~~~v~~i~~~~~~~~-l~~~~~dg  215 (482)
                      .+..++|+|    +|+++++++ .+++|.+||..+++.+..+...         | ...+..+.++|++.. +++...++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence            679999999    999999988 4899999999999988877421         2 236899999997665 55667789


Q ss_pred             eEEEEeCCCCceEE--EeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeeeccC-CCccceeEEEEcCC
Q psy8448         216 YVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTECTSTFKSLG-ASDIAVNSIHLLPK  291 (482)
Q Consensus       216 ~i~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~~~  291 (482)
                      .|.+||..+.+.+.  .+. +...+.++.|+|++++|++++ .+++|.+||..++++...+.... .|......+ ++|+
T Consensus       303 ~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~  380 (543)
T 1nir_A          303 KVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK  380 (543)
T ss_dssp             EEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT
T ss_pred             eEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC
Confidence            99999998876544  343 566788999999999877665 58899999999999888776311 233323333 4777


Q ss_pred             CCCEEEEEe-CCCeEEEEEc-C-------CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe-------CCcEEEEE
Q psy8448         292 NTEHFVVCN-KTNTVVIMNM-Q-------GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-------EDMVLVVR  352 (482)
Q Consensus       292 ~~~~l~~~~-~d~~i~i~d~-~-------~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-------~dg~i~iw  352 (482)
                      +..+++++. .|++|.+||. .       ++.+.++..+   ...+..++++|+|++|++++       .++.|.+|
T Consensus       381 ~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~---g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~  454 (543)
T 1nir_A          381 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ---GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF  454 (543)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS---CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred             CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC---CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEE
Confidence            546777775 6899999999 4       6788888765   45567899999999999987       26788833

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.8e-25  Score=217.37  Aligned_cols=234  Identities=12%  Similarity=0.104  Sum_probs=180.3

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCeE
Q psy8448         107 RFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI--ATGQC  184 (482)
Q Consensus       107 ~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~--~~~~~  184 (482)
                      .|+|++.++++++.|++|.+||..+++.+..+...         ..+..++|+|++++|++++.|+.|.+||+  .+++.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g---------~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG---------YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK  214 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS---------TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC---------cccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence            48899999999999999999999999988776533         12889999999999999999999999999  88888


Q ss_pred             eEEeecccCCCeEEEEEcc----CCCEEEEEEC-CCeEEEEeCCCCceEEEeecc-----------ccceeEEEEcCCCC
Q psy8448         185 LRKLEKAHSLGVTCIQFSR----DNSQILTASF-DTYVRIHGLKSGKMLKEFRGH-----------SSFVNDITFTADGH  248 (482)
Q Consensus       185 ~~~~~~~~~~~v~~i~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~  248 (482)
                      +..+.  +...+..++|+|    +|+++++++. ++.|.+||..+++++..+..+           ...+.++.++|++.
T Consensus       215 ~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~  292 (543)
T 1nir_A          215 VAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  292 (543)
T ss_dssp             EEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             EEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence            88874  455689999999    9999998884 899999999999998887642           22688999999776


Q ss_pred             EE-EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcc-cC
Q psy8448         249 SV-LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR-EG  325 (482)
Q Consensus       249 ~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~-~~  325 (482)
                      .+ ++...++.|.+||+.+.+...... . .+...+..+.|+|++..+++++..+++|.+||. +++.+..+..... |.
T Consensus       293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~-i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~  370 (543)
T 1nir_A          293 EFIVNVKETGKVLLVNYKDIDNLTVTS-I-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP  370 (543)
T ss_dssp             EEEEEETTTTEEEEEECTTSSSCEEEE-E-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred             EEEEEECCCCeEEEEEecCCCcceeEE-e-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence            54 556678999999998876544111 1 234567889999999444555667899999999 6777777764321 23


Q ss_pred             cCEEEEEEcCC-CCEEEEEe-CCcEEEEEee
Q psy8448         326 GDFLCCTTSPR-GEWIYCVG-EDMVLVVRLI  354 (482)
Q Consensus       326 ~~v~~~~~~~~-g~~l~~~~-~dg~i~iw~~  354 (482)
                      +....+ ++|+ |..++++. .|+.|.+|+.
T Consensus       371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             TTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             CCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence            333333 4777 55566665 5899995443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=1.2e-24  Score=201.45  Aligned_cols=239  Identities=12%  Similarity=0.144  Sum_probs=189.3

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eC
Q psy8448          99 SKSHVECARFSPDGQYLITGSV-------DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQ  170 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~  170 (482)
                      ....+..++|+|+++++++++.       ++.|.+||..+++....+...         ..+..++|+|++++++++ ..
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~~l~v~~~~  109 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---------LKPFGATINNTTQTLWFGNTV  109 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---------SCCCSEEEETTTTEEEEEETT
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---------CCcceEEECCCCCEEEEEecC
Confidence            3456889999999999888774       568999999999877766543         347789999999966555 45


Q ss_pred             CCcEEEEEcCCCeEeEEeecccCC--------CeEEEEEccCCCEEEEEE--CCCeEEEEeCCCCceEEEeeccccceeE
Q psy8448         171 SGKVKIWKIATGQCLRKLEKAHSL--------GVTCIQFSRDNSQILTAS--FDTYVRIHGLKSGKMLKEFRGHSSFVND  240 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~  240 (482)
                      ++.|.+||+.+++....+......        .+.+++|+|+++++++++  .++.|.+||+++++.+..+..+...+.+
T Consensus       110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence            799999999999988877432222        278899999999888776  4788999999999988888766667899


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC-CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448         241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG-ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL  318 (482)
Q Consensus       241 l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~  318 (482)
                      ++|+|+++++++++.++.|.+||+.+++....+.... ++...+..++|+|++..++++...++.|.+||. +++.+..+
T Consensus       190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  269 (353)
T 3vgz_A          190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV  269 (353)
T ss_dssp             CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            9999999999999999999999999998877765321 245567889999999445555556699999999 67777766


Q ss_pred             cCCcccCcCEEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8448         319 SSGKREGGDFLCCTTSPRGEWIYCVG-EDMVLVV  351 (482)
Q Consensus       319 ~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~i  351 (482)
                      ....     ...++|+|+|+++++++ .++.|.+
T Consensus       270 ~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~  298 (353)
T 3vgz_A          270 AAPE-----SLAVLFNPARNEAYVTHRQAGKVSV  298 (353)
T ss_dssp             ECSS-----CCCEEEETTTTEEEEEETTTTEEEE
T ss_pred             EcCC-----CceEEECCCCCEEEEEECCCCeEEE
Confidence            6432     25689999999777665 6899993

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=6e-26  Score=231.54  Aligned_cols=248  Identities=11%  Similarity=0.063  Sum_probs=182.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEeC-CC-----eEEEEecCCCceeeccccccccc-----------c-----ccccccEEEEE
Q psy8448         100 KSHVECARFSPDGQYLITGSV-DG-----FIEVWNFTTGKIRKDLKYQAQDN-----------F-----MLMEEAVMSLA  157 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~-----------~-----~~h~~~i~~l~  157 (482)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....+..+....           .     ......+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999998 88     99999999988665544321100           0     00003478999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCe--EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccc
Q psy8448         158 YSRDSEMLASGSQSGKVKIWKIATGQ--CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS  235 (482)
Q Consensus       158 ~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  235 (482)
                      |+|||++|++++. +.|.+||+.++.  ....+ ..+...+.+++|+|||++|++++ ++.|++||+.+++.......+.
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence            9999999999886 899999998872  33344 45777899999999999999988 5699999999887665544333


Q ss_pred             cc----------------eeEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC
Q psy8448         236 SF----------------VNDITFTADGHSVLSASSDG---------------------------------TVKMWNLKT  266 (482)
Q Consensus       236 ~~----------------i~~l~~~~~~~~l~~~~~dg---------------------------------~i~i~d~~~  266 (482)
                      ..                +.+++|+|||++|++++.|+                                 .|.+||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            32                47899999999999987665                                 789999988


Q ss_pred             -CceeeeeeccCCCccceeEEEEcCCCCCEEEEEe-----CCCeEEEEEc-CCcEEEEecCCccc-CcCEEEEEEcCCCC
Q psy8448         267 -TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN-----KTNTVVIMNM-QGQIVRSLSSGKRE-GGDFLCCTTSPRGE  338 (482)
Q Consensus       267 -~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-----~d~~i~i~d~-~~~~~~~~~~~~~~-~~~v~~~~~~~~g~  338 (482)
                       ++...... ...+...+..++| |+| +.+++++     .+..|++||. +++....+..+... ...+..++|+|||+
T Consensus       273 ~~~~~~~~~-~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~  349 (741)
T 2ecf_A          273 QAQTQWIDL-GKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS  349 (741)
T ss_dssp             TCCCEEECC-CSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred             CCceEEecC-CCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence             77544322 1136678999999 999 5565544     2567999999 45544444322100 01345789999999


Q ss_pred             EEEEEeCCcEEEEEe
Q psy8448         339 WIYCVGEDMVLVVRL  353 (482)
Q Consensus       339 ~l~~~~~dg~i~iw~  353 (482)
                      ++++++.||.+.||.
T Consensus       350 ~~~~~~~~g~~~l~~  364 (741)
T 2ecf_A          350 ILWSSERTGFQHLYR  364 (741)
T ss_dssp             EEEEECTTSSCEEEE
T ss_pred             EEEEecCCCccEEEE
Confidence            999999999888663

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=7.4e-25  Score=202.00  Aligned_cols=231  Identities=14%  Similarity=0.215  Sum_probs=160.5

Q ss_pred             EEEEEeCCCeEEEEecCC-CceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-CcEEEEEcC--CCeE--eEE
Q psy8448         114 YLITGSVDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-GKVKIWKIA--TGQC--LRK  187 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-g~i~iwd~~--~~~~--~~~  187 (482)
                      ++++++.|+.|++|++.. ++.......       .|...+.+++|+|++++|++++.+ +.|.+|++.  +++.  +..
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~   79 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE   79 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence            344557899999999963 322211111       135678899999999999998876 999999997  5543  333


Q ss_pred             eecccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCC---CCceEEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEE
Q psy8448         188 LEKAHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLK---SGKMLKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMW  262 (482)
Q Consensus       188 ~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~  262 (482)
                      +.  ....+..++|+|+++++++++. ++.|.+||+.   ..+....+.. ...+.+++|+|+++++++++ .++.|.+|
T Consensus        80 ~~--~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  156 (343)
T 1ri6_A           80 SA--LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLF  156 (343)
T ss_dssp             EE--CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             cc--cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEE
Confidence            32  2337889999999998877765 8899999994   3344444443 34588999999999888887 88999999


Q ss_pred             ECCC-Cceeeee--eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC---CcE--EEEec---CCcccCcCEEEE
Q psy8448         263 NLKT-TECTSTF--KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ---GQI--VRSLS---SGKREGGDFLCC  331 (482)
Q Consensus       263 d~~~-~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~---~~~--~~~~~---~~~~~~~~v~~~  331 (482)
                      |+.+ ++.....  .........+..++|+|++..+++++..++.|.+|+++   +..  .....   ........+..+
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            9987 5543221  11112345678899999994345555688999999993   221  22222   111123456789


Q ss_pred             EEcCCCCEEEEE-eCCcEEEEEee
Q psy8448         332 TTSPRGEWIYCV-GEDMVLVVRLI  354 (482)
Q Consensus       332 ~~~~~g~~l~~~-~~dg~i~iw~~  354 (482)
                      +|+|+|++|+++ ..++.|.+|++
T Consensus       237 ~~s~dg~~l~v~~~~~~~i~v~d~  260 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLITVFSV  260 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEecCCCEEEEEEE
Confidence            999999988854 47899996554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=3.4e-24  Score=196.65  Aligned_cols=232  Identities=10%  Similarity=0.096  Sum_probs=169.4

Q ss_pred             EEcCCCCE-EEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeE
Q psy8448         107 RFSPDGQY-LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-SGKVKIWKIATGQC  184 (482)
Q Consensus       107 ~~s~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~  184 (482)
                      .|.+++++ +++++.++.|.+||+.+++....+...        ...+ .++|+|+++++++++. ++.|.+||+.+++.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~   74 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLG--------YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP   74 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECC--------CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEcc--------CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence            45665555 677788999999999999887665533        2455 9999999997777665 88999999999887


Q ss_pred             -eEEeecccCCCeEEEEEccCCCEEEEEECCC---eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEE-eCCCc-
Q psy8448         185 -LRKLEKAHSLGVTCIQFSRDNSQILTASFDT---YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSA-SSDGT-  258 (482)
Q Consensus       185 -~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~-  258 (482)
                       ...+ ..+..+..+++|+|++++++++..++   .|.+||+.+++.+..+.. ...+.+++|+|++++++++ ..++. 
T Consensus        75 ~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~  152 (331)
T 3u4y_A           75 KVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANT  152 (331)
T ss_dssp             EEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred             eEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCce
Confidence             5555 44555555599999999999655553   899999999998887764 4456899999999865554 55688 


Q ss_pred             EEEEECCCCceeeee-eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcE---EEEecCCcccCcCEEEEEE
Q psy8448         259 VKMWNLKTTECTSTF-KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQI---VRSLSSGKREGGDFLCCTT  333 (482)
Q Consensus       259 i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~---~~~~~~~~~~~~~v~~~~~  333 (482)
                      |.+|++.....+... ............++|+|++..+++++..++.|.+||+ .++.   +..+..    ...+..++|
T Consensus       153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~  228 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVV  228 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEE
T ss_pred             EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEE
Confidence            999999864332111 1000334457899999999445666667899999999 5665   666653    345678999


Q ss_pred             cCCCCEEEEEe-CCcEEEEEe
Q psy8448         334 SPRGEWIYCVG-EDMVLVVRL  353 (482)
Q Consensus       334 ~~~g~~l~~~~-~dg~i~iw~  353 (482)
                      +|+|++|++++ .++.|.+|+
T Consensus       229 spdg~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          229 SRDGSTVYVLTESTVDVFNFN  249 (331)
T ss_dssp             CTTSSEEEEECSSEEEEEEEE
T ss_pred             CCCCCEEEEEEcCCCEEEEEE
Confidence            99999887665 467788443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=9e-25  Score=196.83  Aligned_cols=209  Identities=15%  Similarity=0.135  Sum_probs=157.3

Q ss_pred             EeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEeEEeecccCCCe
Q psy8448         118 GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT-GQCLRKLEKAHSLGV  196 (482)
Q Consensus       118 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v  196 (482)
                      ++.|+.|++||+.+++.....         .|...+.+++|+|++++|++++ ++.|.+||+.+ ++........+...+
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~---------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~   87 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVW---------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICN   87 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEE---------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred             CCcceeEEEEeCCCCceeeec---------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccc
Confidence            457899999999987754322         2467899999999999999986 78999999998 776655532234678


Q ss_pred             EEEEEccCCCEEEEEEC--C--CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE-EEeCCCcEEEEECC--CCce
Q psy8448         197 TCIQFSRDNSQILTASF--D--TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL-SASSDGTVKMWNLK--TTEC  269 (482)
Q Consensus       197 ~~i~~~~~~~~l~~~~~--d--g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~  269 (482)
                      .+++|+|++++|++++.  +  ..|..+++.+++ ...+..+ ..+..++|+|+++.|+ ++..++.+.+|+++  +++.
T Consensus        88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~  165 (297)
T 2ojh_A           88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE  165 (297)
T ss_dssp             SCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             cceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence            99999999999999983  3  455555655555 3444433 3488999999999887 67788999999864  3433


Q ss_pred             eeeeeccCCCccceeEEEEcCCCCCEEEE-EeCCCeEEEEEc--CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         270 TSTFKSLGASDIAVNSIHLLPKNTEHFVV-CNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~-~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                       ..+.   .+...+.++.|+|++ ..+++ +..++.+.+|++  .+.....+..+   ...+.+++|+|+|++|++++.+
T Consensus       166 -~~~~---~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          166 -TRLT---HGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSVERITDS---AYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             -EECC---CSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCEEECCCC---SEEEEEEEECTTSSEEEEEEEE
T ss_pred             -eEcc---cCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCcEEEecC---CcccCCeEECCCCCEEEEEEcC
Confidence             3333   566789999999999 55554 446889999987  45666666554   5678899999999999988876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=2.1e-24  Score=219.60  Aligned_cols=262  Identities=13%  Similarity=0.169  Sum_probs=186.0

Q ss_pred             CCccccccccccccccccceeeecCCCC---cEEEEEEcCCCCEEEEEeCC---------CeEEEEecCCCceeeccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKS---HVECARFSPDGQYLITGSVD---------GFIEVWNFTTGKIRKDLKYQ  141 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~  141 (482)
                      ++.+.+|+......     ..+..+|..   .|.+++|||||++|++++.+         +.+++||+.+++.. .+...
T Consensus        36 dg~i~~~d~~~g~~-----~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~  109 (723)
T 1xfd_A           36 KGTVRLWNVETNTS-----TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPP  109 (723)
T ss_dssp             SSCEEEBCGGGCCC-----EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCT
T ss_pred             CCCEEEEECCCCcE-----EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-eccCC
Confidence            45667777654432     233335554   49999999999999999764         78899999988752 22211


Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCC------------------eEEEEEcc
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLG------------------VTCIQFSR  203 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------v~~i~~~~  203 (482)
                           .+|...+..++|+|||++|++++. +.|++||+.+++..... ..+...                  +.+++|+|
T Consensus       110 -----~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp  182 (723)
T 1xfd_A          110 -----EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (723)
T ss_dssp             -----TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             -----ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECC
Confidence                 123455889999999999999886 79999999988776655 333332                  37899999


Q ss_pred             CCCEEEEEECCC----------------------------------eEEEEeCCCCceEEEeecc------ccceeEEEE
Q psy8448         204 DNSQILTASFDT----------------------------------YVRIHGLKSGKMLKEFRGH------SSFVNDITF  243 (482)
Q Consensus       204 ~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~------~~~i~~l~~  243 (482)
                      ||++|++++.++                                  .|++||+.+++....+..+      ...+..++|
T Consensus       183 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~  262 (723)
T 1xfd_A          183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (723)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE
Confidence            999999887543                                  7999999988865666543      567899999


Q ss_pred             cCCCCEEEEEeC----CCcEEEEECCCCceeeeeeccCCCccce----eEEEEcCCCCCEEEE-EeCCC------eEEEE
Q psy8448         244 TADGHSVLSASS----DGTVKMWNLKTTECTSTFKSLGASDIAV----NSIHLLPKNTEHFVV-CNKTN------TVVIM  308 (482)
Q Consensus       244 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~v----~~i~~~~~~~~~l~~-~~~d~------~i~i~  308 (482)
                      +|||+++++...    +..|.+||+.+++....+..  .+...+    ..++|+|+|..++++ +..++      .|.+|
T Consensus       263 SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~  340 (723)
T 1xfd_A          263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS  340 (723)
T ss_dssp             SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred             eCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEE
Confidence            999998877653    35799999999887665532  122233    378999999655555 56677      57778


Q ss_pred             E-cCCcE---EEEecCCcccCcCEEE-EEEcCCCCEEEEEeCC---cEEEEEe
Q psy8448         309 N-MQGQI---VRSLSSGKREGGDFLC-CTTSPRGEWIYCVGED---MVLVVRL  353 (482)
Q Consensus       309 d-~~~~~---~~~~~~~~~~~~~v~~-~~~~~~g~~l~~~~~d---g~i~iw~  353 (482)
                      | ..+..   ...+..+   ...+.. ++|+|||+.|+..+.+   +.+++|+
T Consensus       341 d~~~~~~~~~~~~l~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          341 SSQPNSSNDNIQSITSG---DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             CSSCCSSSCCCCBSCCS---SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             eccCCCCccceeEeecC---CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence            7 44443   4444432   334454 6999999999876655   7788554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.7e-24  Score=220.91  Aligned_cols=234  Identities=13%  Similarity=0.106  Sum_probs=176.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCC---ceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTG---KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      .|.+++|||||++|++++. +.|++||+.++   +.. .+        ..|...+..++|+|||++|++++. +.|++||
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l--------~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d  178 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QL--------THGEGFATDAKLSPKGGFVSFIRG-RNLWVID  178 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BC--------CCSSSCEEEEEECTTSSEEEEEET-TEEEEEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE-Ec--------ccCCcccccccCCCCCCEEEEEeC-CcEEEEe
Confidence            4889999999999999986 99999999887   322 22        224567999999999999999874 6999999


Q ss_pred             cCCCeEeEEeecccCCC----------------eEEEEEccCCCEEEEEECCC---------------------------
Q psy8448         179 IATGQCLRKLEKAHSLG----------------VTCIQFSRDNSQILTASFDT---------------------------  215 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~----------------v~~i~~~~~~~~l~~~~~dg---------------------------  215 (482)
                      +.+++..... ..+...                +..++|+|||++|++++.|+                           
T Consensus       179 ~~~g~~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g  257 (741)
T 2ecf_A          179 LASGRQMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG  257 (741)
T ss_dssp             TTTTEEEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred             cCCCCEEEec-cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence            9988765544 233222                47899999999999987665                           


Q ss_pred             ------eEEEEeCCC-CceEEEee--ccccceeEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeeeeeccCCC-c
Q psy8448         216 ------YVRIHGLKS-GKMLKEFR--GHSSFVNDITFTADGHSVLSASS-----DGTVKMWNLKTTECTSTFKSLGAS-D  280 (482)
Q Consensus       216 ------~i~i~d~~~-~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~-~  280 (482)
                            .|++||+.+ ++......  .|...+..++| |||++|++++.     +..|.+||+.+++....+...... -
T Consensus       258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  336 (741)
T 2ecf_A          258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV  336 (741)
T ss_dssp             SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred             CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence                  899999988 77654443  37788999999 99999987754     567999999999877666421100 0


Q ss_pred             cceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCcccCcCEEEE-EEcCCCCEEEEE-eCCc--EEEEEe
Q psy8448         281 IAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLCC-TTSPRGEWIYCV-GEDM--VLVVRL  353 (482)
Q Consensus       281 ~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~-~~~~~g~~l~~~-~~dg--~i~iw~  353 (482)
                      ..+..++|+|++ +++++++.++.+.+|.+  +++ ...+..+   ...+..+ .|+|+|+.|+.. +.++  .+++|+
T Consensus       337 ~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~---~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          337 PLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK-AAALTHG---NWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             CCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC-EEESCCS---SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             CcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC-eeeeeec---ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            145688999999 58888889987777766  466 6666554   5667777 599999987654 4454  788554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=2.7e-24  Score=218.11  Aligned_cols=229  Identities=13%  Similarity=0.152  Sum_probs=172.4

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA  180 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~  180 (482)
                      ..|.+++|||| +.++.+. ++.|++||+.+++......         +...+.+++|+|+|++|+++ .++.|++||+.
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~---------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~  149 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFD---------TNEETASLDFSPVGDRVAYV-RNHNLYIARGG  149 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEEC---------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECB
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccC---------CcccccCCcCCCCCCEEEEE-ECCeEEEEecC
Confidence            57999999999 6666554 5999999998876543222         23567889999999999985 67999999998


Q ss_pred             C-----CeEeEEeecccCCC--------------eEEEEEccCCCEEEEEE-----------------------------
Q psy8448         181 T-----GQCLRKLEKAHSLG--------------VTCIQFSRDNSQILTAS-----------------------------  212 (482)
Q Consensus       181 ~-----~~~~~~~~~~~~~~--------------v~~i~~~~~~~~l~~~~-----------------------------  212 (482)
                      +     ++..... ..+...              +.+++|+|||++|++++                             
T Consensus       150 ~~~~~~g~~~~~~-~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~  228 (706)
T 2z3z_A          150 KLGEGMSRAIAVT-IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMA  228 (706)
T ss_dssp             CTTSCCCCCEESC-SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBT
T ss_pred             cccccCCCcEEec-cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCC
Confidence            8     7655433 222222              47899999999999987                             


Q ss_pred             ----CCCeEEEEeCCCCceEEEee--ccccceeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeeeeeccCCCc-
Q psy8448         213 ----FDTYVRIHGLKSGKMLKEFR--GHSSFVNDITFTADGHSVLSASSDG-----TVKMWNLKTTECTSTFKSLGASD-  280 (482)
Q Consensus       213 ----~dg~i~i~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~-  280 (482)
                          .+..|++||+.+++......  .|...+.+++|+|||+.|++++.++     .|.+||+.+++....+... .+. 
T Consensus       229 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~  307 (706)
T 2z3z_A          229 GTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKH  307 (706)
T ss_dssp             TSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSS
T ss_pred             CCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCC
Confidence                44689999999887654432  4667899999999999999887765     8999999998443333211 111 


Q ss_pred             --cceeEEEEcC--CCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCcccCcCEEE-EEEcCCCCEEEEEeCCc
Q psy8448         281 --IAVNSIHLLP--KNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLC-CTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       281 --~~v~~i~~~~--~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~-~~~~~~g~~l~~~~~dg  347 (482)
                        ..+..+.|+|  ++ .++++++.++.+++|.+  +++.+..+..+   ...+.. ++|+|+|+.|+.++.+.
T Consensus       308 ~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~---~~~v~~~~~~spdg~~l~~~~~~~  377 (706)
T 2z3z_A          308 YVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLIRQVTKG---EWEVTNFAGFDPKGTRLYFESTEA  377 (706)
T ss_dssp             CCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEEEECCCS---SSCEEEEEEECTTSSEEEEEESSS
T ss_pred             eECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCEEEecCCC---CeEEEeeeEEcCCCCEEEEEecCC
Confidence              2346789999  88 68888888998888877  56777777654   556766 79999999887666543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=5.5e-25  Score=223.84  Aligned_cols=240  Identities=10%  Similarity=0.098  Sum_probs=173.5

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---------C
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---------G  172 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---------g  172 (482)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..+..     +...|.+++|+|||++|++++.+         +
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~-----~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKI-----ESLRAIRYEISPDREYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTT-----TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccc-----cccccceEEECCCCCEEEEEecCccceeeccee
Confidence            4677899999998776 7899999999999876554433210     01248999999999999999764         7


Q ss_pred             cEEEEEcCCCeEeEEee--cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccce------------
Q psy8448         173 KVKIWKIATGQCLRKLE--KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFV------------  238 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i------------  238 (482)
                      .+.+||+.+++. ..+.  ..+...+..++|+|||+.|+.++. +.|++||+.+++.......+...+            
T Consensus        92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             eEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            888999998875 3332  223445889999999999999985 899999999988766655444333            


Q ss_pred             ------eEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCceeeeeecc--
Q psy8448         239 ------NDITFTADGHSVLSASSDG----------------------------------TVKMWNLKTTECTSTFKSL--  276 (482)
Q Consensus       239 ------~~l~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~--  276 (482)
                            .+++|+|||+.|++++.++                                  .|.+||+.+++....+...  
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~  249 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence                  7899999999999887543                                  7999999988754444311  


Q ss_pred             -CCCccceeEEEEcCCCCCEEEEEeC----CCeEEEEEc-CCcEEEEecCCcccCcCE----EEEEEcCCCCEEEE--Ee
Q psy8448         277 -GASDIAVNSIHLLPKNTEHFVVCNK----TNTVVIMNM-QGQIVRSLSSGKREGGDF----LCCTTSPRGEWIYC--VG  344 (482)
Q Consensus       277 -~~~~~~v~~i~~~~~~~~~l~~~~~----d~~i~i~d~-~~~~~~~~~~~~~~~~~v----~~~~~~~~g~~l~~--~~  344 (482)
                       ..+...+..++|+|+| +++++...    +..|++||+ .++....+....  ...+    ..++|+|||+.|+.  +.
T Consensus       250 ~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~  326 (723)
T 1xfd_A          250 PRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKDGRKFFFIRAI  326 (723)
T ss_dssp             GGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred             CCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccCCCceEcCCCCeEEEEEec
Confidence             0135678999999999 56655542    357999999 455444433221  1222    36899999997775  45


Q ss_pred             CCc----EEEEE
Q psy8448         345 EDM----VLVVR  352 (482)
Q Consensus       345 ~dg----~i~iw  352 (482)
                      .++    ...||
T Consensus       327 ~~~~~~~~~~l~  338 (723)
T 1xfd_A          327 PQGGRGKFYHIT  338 (723)
T ss_dssp             CCSSSSCEEEEE
T ss_pred             ccCCCcceeEEE
Confidence            677    55544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1.3e-23  Score=193.65  Aligned_cols=265  Identities=13%  Similarity=0.216  Sum_probs=183.9

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEecC--CCceeecccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVD-GFIEVWNFT--TGKIRKDLKYQAQDNFMLME  150 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~v~iwd~~--~~~~~~~~~~~~~~~~~~h~  150 (482)
                      ++.+.+|+..... .......  ..|...+.+++|+|+|++|++++.+ +.|.+|++.  +++.........       .
T Consensus        14 ~~~v~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~   83 (343)
T 1ri6_A           14 SQQIHVWNLNHEG-ALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-------P   83 (343)
T ss_dssp             GTEEEEEEECTTS-CEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-------S
T ss_pred             CCeEEEEEECCCC-cEEEeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-------C
Confidence            5667777764311 1111112  2577789999999999999888876 999999998  554332211111       2


Q ss_pred             ccEEEEEEcCCCCEEEEEeC-CCcEEEEEcC---CCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCC-
Q psy8448         151 EAVMSLAYSRDSEMLASGSQ-SGKVKIWKIA---TGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKS-  224 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~-  224 (482)
                      ..+..++|+|++++|++++. ++.|.+||+.   ..+....+  .....+.+++|+|+++++++++ .++.|.+||+.+ 
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  161 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  161 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence            36889999999998877765 8889999994   33344444  2344688999999999888887 899999999987 


Q ss_pred             CceEE----Eeec-cccceeEEEEcCCCCEEEEEe-CCCcEEEEECCC--Cce--eeeeeccCC---CccceeEEEEcCC
Q psy8448         225 GKMLK----EFRG-HSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKT--TEC--TSTFKSLGA---SDIAVNSIHLLPK  291 (482)
Q Consensus       225 ~~~~~----~~~~-~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~i~~~~~  291 (482)
                      ++...    .+.. ....+.+++|+|+++++++++ .++.|.+||+..  ++.  ...+.....   ....+..++|+|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  241 (343)
T 1ri6_A          162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD  241 (343)
T ss_dssp             SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred             CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence            55432    2222 345788999999999776655 789999999954  332  222221111   1335668999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcC--Cc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEe-CCcEEEEEee
Q psy8448         292 NTEHFVVCNKTNTVVIMNMQ--GQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-EDMVLVVRLI  354 (482)
Q Consensus       292 ~~~~l~~~~~d~~i~i~d~~--~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~~  354 (482)
                      +..+++++..++.|.+|++.  +.   .+..+..    ...+..++|+|+|++|++++ .++.+.+|++
T Consensus       242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT----ETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC----SSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC----CCccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            94444466689999999995  32   2333332    22378899999999999888 6899997754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=9.5e-24  Score=194.04  Aligned_cols=222  Identities=10%  Similarity=0.104  Sum_probs=164.2

Q ss_pred             CEEEEEeCCCeEEEEecCCCceeeccccccccccccccc-cEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCeEeEEeec
Q psy8448         113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE-AVMSLAYSRDSEMLAS-GSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~-~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      ++|++++.++.|.+||+.+++....+....       .. .+..++|+|+++++++ +..++.|.+||+.+++.+..+..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIAD-------AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTT-------CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCC-------CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence            478999999999999999988776654331       11 4778999999987655 45678999999999988877643


Q ss_pred             cc----CCCeEEEEEccCCCEEEEEE------------CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         191 AH----SLGVTCIQFSRDNSQILTAS------------FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       191 ~~----~~~v~~i~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      .+    ...+..++|+|++++++++.            .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ 
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-  152 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL-  152 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-
T ss_pred             CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-
Confidence            32    22577899999999998886            579999999999888777764 4568899999999988887 


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC-----------------------eEEEEEcC
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN-----------------------TVVIMNMQ  311 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----------------------~i~i~d~~  311 (482)
                       ++.|.+||+.+++....+.... ...+   +.|+|++..+++++..++                       .|.+||..
T Consensus       153 -~~~i~~~d~~~~~~~~~~~~~~-~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  227 (337)
T 1pby_B          153 -GRDLHVMDPEAGTLVEDKPIQS-WEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             -SSSEEEEETTTTEEEEEECSTT-TTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             -CCeEEEEECCCCcEeeeeeccc-cCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence             6889999999998776664211 1122   367888844444433333                       46899994


Q ss_pred             -CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         312 -GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       312 -~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                       ++.. .+.. ..+...+.+++|+|+|++++++  ++.|++|
T Consensus       228 ~~~~~-~~~~-~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~  265 (337)
T 1pby_B          228 TGEMA-MREV-RIMDVFYFSTAVNPAKTRAFGA--YNVLESF  265 (337)
T ss_dssp             TCCEE-EEEE-EECSSCEEEEEECTTSSEEEEE--ESEEEEE
T ss_pred             CCCce-Eeec-CCCCCceeeEEECCCCCEEEEe--CCeEEEE
Confidence             4433 2221 1224567889999999999988  6889943

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=4.1e-24  Score=192.55  Aligned_cols=253  Identities=18%  Similarity=0.204  Sum_probs=181.1

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCC-Cceeecccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      ++.+.+|+......     . .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++........       +...
T Consensus        21 ~~~i~~~d~~~~~~-----~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-------~~~~   86 (297)
T 2ojh_A           21 RSSIEIFNIRTRKM-----R-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-------ATIC   86 (297)
T ss_dssp             CEEEEEEETTTTEE-----E-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-------CCCB
T ss_pred             ceeEEEEeCCCCce-----e-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-------cccc
Confidence            45566666543221     1 2236788999999999999999987 78999999998 7655443322       1357


Q ss_pred             EEEEEEcCCCCEEEEEe--CCCcEEEEE--cCCCeEeEEeecccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCC-Cc
Q psy8448         153 VMSLAYSRDSEMLASGS--QSGKVKIWK--IATGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKS-GK  226 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~--~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~-~~  226 (482)
                      +.+++|+|++++|++++  .++...+|.  +.++. ...+ . ....+..++|+|++++|+ ++..++.+.+|+++. ..
T Consensus        87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLM-T-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEEC-C-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred             ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEe-e-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence            88999999999999998  334555554  44444 3333 2 334589999999999887 777899889988532 23


Q ss_pred             eEEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECC-CCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC--
Q psy8448         227 MLKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLK-TTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT--  302 (482)
Q Consensus       227 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--  302 (482)
                      ....+..+...+.+++|+|+++.|+.++ .++.+.+|++. .+.....+.   .+...+..+.|+|++ ..+++++.+  
T Consensus       164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg-~~l~~~~~~~~  239 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT---DSAYGDWFPHPSPSG-DKVVFVSYDAD  239 (297)
T ss_dssp             CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC---CCSEEEEEEEECTTS-SEEEEEEEETT
T ss_pred             cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe---cCCcccCCeEECCCC-CEEEEEEcCCC
Confidence            3456666888899999999999888776 58899999886 444445544   566789999999999 666666554  


Q ss_pred             ---------CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         303 ---------NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       303 ---------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                               +.|.+||+.+.....+.....+...+.+++|+|+|++|++++.+.
T Consensus       240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                     569999995433222221112256788899999999999877653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=1.2e-23  Score=221.71  Aligned_cols=269  Identities=13%  Similarity=0.102  Sum_probs=193.3

Q ss_pred             cCCCCCCceeeccC------C--ccccccccccccccccceeeecCCCCcE-------EEEEEcCCCCEEEEEeCC----
Q psy8448          61 QGLLPPGTTIDLFR------G--KAAMKDQEEEKYPTQLSKQIKFGSKSHV-------ECARFSPDGQYLITGSVD----  121 (482)
Q Consensus        61 ~~~~~~g~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~s~~~~~l~s~~~d----  121 (482)
                      ..+.|+|..+++..      +  .+.+|+.....     . ..+..|...+       .+++|+|||+++++++.+    
T Consensus        58 ~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-----~-~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~  131 (1045)
T 1k32_A           58 ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-----I-KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS  131 (1045)
T ss_dssp             EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-----E-EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred             eEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-----e-EEcccCCCcccccccccccccCCCCCEEEEEECCcCCCc
Confidence            34557887777553      2  34455443321     2 2234788888       999999999977777744    


Q ss_pred             --CeEEEEecCCCceeecccc-----------------------------------------ccccccccccccEEEEEE
Q psy8448         122 --GFIEVWNFTTGKIRKDLKY-----------------------------------------QAQDNFMLMEEAVMSLAY  158 (482)
Q Consensus       122 --g~v~iwd~~~~~~~~~~~~-----------------------------------------~~~~~~~~h~~~i~~l~~  158 (482)
                        ..|.+|++.+++.......                                         .....+.+|...+.++.|
T Consensus       132 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~  211 (1045)
T 1k32_A          132 SMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVI  211 (1045)
T ss_dssp             TCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEE
T ss_pred             ccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEE
Confidence              4688888876654321110                                         001123467788999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCC-CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec----
Q psy8448         159 SRDSEMLASGSQSGKVKIWKIAT-GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG----  233 (482)
Q Consensus       159 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----  233 (482)
                      +++ .++++++.++.+.+|.+.. +.....+ ..+. .+...+|+|+|+.|+++. ++.|++||+...+ +..+..    
T Consensus       212 s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~  286 (1045)
T 1k32_A          212 VGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLE  286 (1045)
T ss_dssp             ETT-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCC
T ss_pred             eCC-EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccc
Confidence            988 6667778889999998753 3344444 3343 466779999999998885 8999999995443 335544    


Q ss_pred             -------cccceeEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc-ceeEEEEcCCCCCEEEEEeCCCe
Q psy8448         234 -------HSSFVNDITFT-ADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI-AVNSIHLLPKNTEHFVVCNKTNT  304 (482)
Q Consensus       234 -------~~~~i~~l~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~~~~d~~  304 (482)
                             |...+.+++|+ |+|+.|++++ ++.|.+|++..++... +.   .+.. .+..++|+ ++ ..++.++.++.
T Consensus       287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~---~~~~~~~~~~~~s-dg-~~l~~~s~~~~  359 (1045)
T 1k32_A          287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP---EPLRIRYVRRGGD-TK-VAFIHGTREGD  359 (1045)
T ss_dssp             BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS---CCSCEEEEEECSS-SE-EEEEEEETTEE
T ss_pred             ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc---CCCcceEEeeeEc-CC-CeEEEEECCCc
Confidence                   34478999999 9999998888 7899999998876543 22   4555 88999999 87 77788777888


Q ss_pred             EE-EEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         305 VV-IMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       305 i~-i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +. +|+..+.....+..   +...+..++|+|||++|++++.++.++
T Consensus       360 l~~~~d~~~~~~~~l~~---~~~~~~~~~~SpDG~~la~~~~~~~v~  403 (1045)
T 1k32_A          360 FLGIYDYRTGKAEKFEE---NLGNVFAMGVDRNGKFAVVANDRFEIM  403 (1045)
T ss_dssp             EEEEEETTTCCEEECCC---CCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEEEEECCCCCceEecC---CccceeeeEECCCCCEEEEECCCCeEE
Confidence            88 89996655555552   267889999999999999999999999

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=4.8e-23  Score=217.15  Aligned_cols=243  Identities=12%  Similarity=0.119  Sum_probs=191.9

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc---ccccccccccEEEEEEc-CCCCEEEEEeCCCc
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA---QDNFMLMEEAVMSLAYS-RDSEMLASGSQSGK  173 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~h~~~i~~l~~~-~~~~~l~~~~~dg~  173 (482)
                      +|. .+..++|+|||+.|+++. ++.|++|++...+.. .+....   ......|...+.+++|+ |+|++|++++ ++.
T Consensus       243 ~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~  318 (1045)
T 1k32_A          243 SFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQ  318 (1045)
T ss_dssp             CCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTE
T ss_pred             CCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCE
Confidence            444 467789999999999885 899999999544333 322211   11122245578999999 9999999988 789


Q ss_pred             EEEEEcCCCeEeEEeecccCC-CeEEEEEccCCCEEEEEECCCeEE-EEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSL-GVTCIQFSRDNSQILTASFDTYVR-IHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      +.+|++.+++... + ..+.. .+..++|+ +|+.|++++.++.+. +||+.+++... +.+|...+..++|+|+|++|+
T Consensus       319 i~~~~~~~~~~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la  394 (1045)
T 1k32_A          319 AFIQDVSGTYVLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAV  394 (1045)
T ss_dssp             EEEECTTSSBEEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEE
T ss_pred             EEEEcCCCCceEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEE
Confidence            9999998776543 4 45666 89999999 999999999888899 99998776544 447888899999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC----------CeEEEEEcCCcEEEEecCC
Q psy8448         252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT----------NTVVIMNMQGQIVRSLSSG  321 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~  321 (482)
                      +++.++.|++||+.+++......   .+...+.+++|+|+| +++++++.+          +.|++||+.+.....+..+
T Consensus       395 ~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~  470 (1045)
T 1k32_A          395 VANDRFEIMTVDLETGKPTVIER---SREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE  470 (1045)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred             EECCCCeEEEEECCCCceEEecc---CCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC
Confidence            99999999999999998777665   677788999999999 667666554          4899999965556666554


Q ss_pred             cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         322 KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       322 ~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                         ...+..++|+|||++|++++.++...+|+..
T Consensus       471 ---~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          471 ---NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             ---SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ---CcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence               5667889999999999999998888877643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1.4e-22  Score=185.91  Aligned_cols=262  Identities=13%  Similarity=0.127  Sum_probs=181.9

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCce-eeccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSV-DGFIEVWNFTTGKI-RKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~v~iwd~~~~~~-~~~~~~~~~~~~~~h~~  151 (482)
                      ++.+.+|+......    ...+. .+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+...        ..
T Consensus        19 ~~~v~~~d~~~~~~----~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~   84 (331)
T 3u4y_A           19 LRRISFFSTDTLEI----LNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG--------QS   84 (331)
T ss_dssp             GTEEEEEETTTCCE----EEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC--------SS
T ss_pred             CCeEEEEeCcccce----eeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC--------CC
Confidence            45666776543322    22233 345556 9999999997766654 88999999998876 3333322        34


Q ss_pred             cEEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEE-ECCCe-EEEEeCCCCc
Q psy8448         152 AVMSLAYSRDSEMLASGSQSG---KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA-SFDTY-VRIHGLKSGK  226 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~-i~i~d~~~~~  226 (482)
                      +..+++|+|++++++++..++   .|.+||+.+++.+..+.  ......+++|+|+|++++++ ..++. |.+|++....
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A           85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence            444599999999999555443   89999999998887763  34557999999999866555 55578 9999987644


Q ss_pred             eEE----EeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCce---eeeeeccCCCccceeEEEEcCCCCCEEEE
Q psy8448         227 MLK----EFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTEC---TSTFKSLGASDIAVNSIHLLPKNTEHFVV  298 (482)
Q Consensus       227 ~~~----~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  298 (482)
                      .+.    ........+..++|+|+++++++++ .++.|.+||+.+++.   +..+.    ....+..++|+|++..++++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEE
T ss_pred             cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEE
Confidence            331    1223445689999999999766555 688999999999887   65554    33567889999999434455


Q ss_pred             EeCCCeEEEEEcC-CcE--EEEecCC----cccCcCEEEEEEcCCCCEEEEEeC-CcEEEEEeeh
Q psy8448         299 CNKTNTVVIMNMQ-GQI--VRSLSSG----KREGGDFLCCTTSPRGEWIYCVGE-DMVLVVRLIQ  355 (482)
Q Consensus       299 ~~~d~~i~i~d~~-~~~--~~~~~~~----~~~~~~v~~~~~~~~g~~l~~~~~-dg~i~iw~~~  355 (482)
                      ...++.|.+||.. ++.  +..+...    .........++|+|||++|++++. ++.|.+|++.
T Consensus       239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence            5567889999995 444  3333222    111122356899999999876554 6699966654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=4.5e-22  Score=183.72  Aligned_cols=225  Identities=12%  Similarity=0.145  Sum_probs=149.3

Q ss_pred             CCeEEEEecC--CCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeE--eEEeecccC
Q psy8448         121 DGFIEVWNFT--TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---SGKVKIWKIATGQC--LRKLEKAHS  193 (482)
Q Consensus       121 dg~v~iwd~~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---dg~i~iwd~~~~~~--~~~~~~~~~  193 (482)
                      ++.|.+|+++  +++.......       .+...+..++|+|+++ |++++.   ++.|.+|++.+++.  +..+ ..+.
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~-------~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~   85 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLL-------AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPG   85 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEE-------EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEES
T ss_pred             CCCEEEEEEcCCCCeEEEeeee-------eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCC
Confidence            4567777665  4443321111       1235678899999999 665554   68999999977653  3333 3466


Q ss_pred             CCeEEEEEccCCCEEEEEE-CCCeEEEEeCCC-Cc--eEEEeec---------cccceeEEEEcCCCCEEEEEeCCCcEE
Q psy8448         194 LGVTCIQFSRDNSQILTAS-FDTYVRIHGLKS-GK--MLKEFRG---------HSSFVNDITFTADGHSVLSASSDGTVK  260 (482)
Q Consensus       194 ~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~-~~--~~~~~~~---------~~~~i~~l~~~~~~~~l~~~~~dg~i~  260 (482)
                      ..+..++|+|++++|++++ .++.|.+|++.. +.  .+..+..         +...+.+++|+|+++.+++...++.|.
T Consensus        86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~  165 (347)
T 3hfq_A           86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY  165 (347)
T ss_dssp             CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence            7788999999999998888 678999999963 22  2333321         122478899999999666666688999


Q ss_pred             EEECC-CCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC---CcE--EEEecCCcc---cCcCEEEE
Q psy8448         261 MWNLK-TTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ---GQI--VRSLSSGKR---EGGDFLCC  331 (482)
Q Consensus       261 i~d~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~---~~~--~~~~~~~~~---~~~~v~~~  331 (482)
                      +||+. +++.................++|+|++..+++++..++.|.+|+++   ++.  +..+.....   ....+..+
T Consensus       166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  245 (347)
T 3hfq_A          166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI  245 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE
T ss_pred             EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE
Confidence            99998 4543322111112233567899999994455666788999999984   332  222222110   11457889


Q ss_pred             EEcCCCCEEE-EEeCCcEEEEEee
Q psy8448         332 TTSPRGEWIY-CVGEDMVLVVRLI  354 (482)
Q Consensus       332 ~~~~~g~~l~-~~~~dg~i~iw~~  354 (482)
                      +|+|||++|+ +...++.|.+|++
T Consensus       246 ~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          246 RLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EECTTSCEEEEEEETTTEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEE
Confidence            9999999885 5566899996654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=4.9e-23  Score=194.90  Aligned_cols=251  Identities=12%  Similarity=0.114  Sum_probs=174.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCcee-------eccccccccccccccccEEEEEEcCCCCEEE----EE
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIR-------KDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA----SG  168 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~----~~  168 (482)
                      ...++.+++++++.++++++.++ +++|+.......       .............|...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44688999999999999999888 899875421110       0000000111123456899999999999999    77


Q ss_pred             eCCCcEEEEEcCCC--------eEe--EEeecccCCCeEEEEEccC-CCEEEEEECCCeEEEEeCCCCceEEEeeccccc
Q psy8448         169 SQSGKVKIWKIATG--------QCL--RKLEKAHSLGVTCIQFSRD-NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSF  237 (482)
Q Consensus       169 ~~dg~i~iwd~~~~--------~~~--~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  237 (482)
                      +.|+.|++||+.++        +.+  .....+|...|.+++|+|+ +.+|++++.||.|++||++++..+....+|...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            88999999998764        221  1222568999999999997 789999999999999999999777777788999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC----CCccceeEEEEcCCCCCEEEE-EeCCC------eEE
Q psy8448         238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----ASDIAVNSIHLLPKNTEHFVV-CNKTN------TVV  306 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~l~~-~~~d~------~i~  306 (482)
                      |.+++|+|+|++|++|+.||.|++||++ ++....+....    .|...+.+++|++++ .++++ .+.+|      .++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~  272 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVV  272 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceE
Confidence            9999999999999999999999999998 55554443211    233489999999976 44433 44443      389


Q ss_pred             EEEcCCc------EEEEecCC----cccCcCEEEEEEcCCCCEEEEEeC-CcEEEEEe
Q psy8448         307 IMNMQGQ------IVRSLSSG----KREGGDFLCCTTSPRGEWIYCVGE-DMVLVVRL  353 (482)
Q Consensus       307 i~d~~~~------~~~~~~~~----~~~~~~v~~~~~~~~g~~l~~~~~-dg~i~iw~  353 (482)
                      +|++...      ....+...    .....+...+.+-++.+++++++. .+.|.+..
T Consensus       273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~  330 (434)
T 2oit_A          273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA  330 (434)
T ss_dssp             EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred             EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence            9998422      22222211    011222233444477777665554 45555443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=1.3e-21  Score=181.04  Aligned_cols=237  Identities=11%  Similarity=0.120  Sum_probs=184.4

Q ss_pred             CcEEEEEEcCCCCEEEE-EeCCCeEEEEecCCCceeecccccccccc-ccccccEEEEEEcCCCCEEEEEe--CCCcEEE
Q psy8448         101 SHVECARFSPDGQYLIT-GSVDGFIEVWNFTTGKIRKDLKYQAQDNF-MLMEEAVMSLAYSRDSEMLASGS--QSGKVKI  176 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~h~~~i~~l~~~~~~~~l~~~~--~dg~i~i  176 (482)
                      ..+..++|+|+|++++. +..++.|.+||..+++....+........ ......+.+++|+|+++++++++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            45788999999996654 45679999999999988766654321100 00011378899999999888776  4788999


Q ss_pred             EEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec----cccceeEEEEcCCCCEEEE
Q psy8448         177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG----HSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~  252 (482)
                      ||+.+++....+ ..+...+.+++|+|+++++++++.++.|.+||+.+++....+..    +...+.+++|+|+++++++
T Consensus       169 ~d~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  247 (353)
T 3vgz_A          169 VDGGNIKLKTAI-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI  247 (353)
T ss_dssp             EETTTTEEEEEE-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred             EcCCCCceEEEe-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence            999999988877 33555688999999999999999999999999999998877764    4556888999999998777


Q ss_pred             EeC-CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEE
Q psy8448         253 ASS-DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLC  330 (482)
Q Consensus       253 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~  330 (482)
                      ++. ++.|.+||+.+++....+..   ..  ...++|+|++..++++...++.|.+||. +++.+..+..    ...+.+
T Consensus       248 ~~~~~~~v~~~d~~~~~~~~~~~~---~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~  318 (353)
T 3vgz_A          248 TDSKAAEVLVVDTRNGNILAKVAA---PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT----PTHPNS  318 (353)
T ss_dssp             EESSSSEEEEEETTTCCEEEEEEC---SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC----CSEEEE
T ss_pred             EeCCCCEEEEEECCCCcEEEEEEc---CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec----CCCCCe
Confidence            765 48999999999988877763   22  2569999999445566667999999999 5776666654    345789


Q ss_pred             EEEcCCCCEEEEEeCCc
Q psy8448         331 CTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~dg  347 (482)
                      ++|+|+|++|+++..++
T Consensus       319 ~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          319 LALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEECTTSCEEEEEEECC
T ss_pred             EEEcCCCCEEEEEEccc
Confidence            99999999888776654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=2.4e-22  Score=203.80  Aligned_cols=277  Identities=14%  Similarity=0.144  Sum_probs=192.3

Q ss_pred             CCCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCC-----Cceeecc
Q psy8448          64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTT-----GKIRKDL  138 (482)
Q Consensus        64 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~  138 (482)
                      .|++..+...++.+.+|+.....     ...+ ..+...+.+++|||||++|+++ .++.|++||+.+     ++.....
T Consensus        90 spd~~~~~~~~~~i~~~d~~~~~-----~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~  162 (706)
T 2z3z_A           90 AGRGLVVLFTQGGLVGFDMLARK-----VTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT  162 (706)
T ss_dssp             TTTTEEEEEETTEEEEEETTTTE-----EEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred             CCCCeEEEEECCEEEEEECCCCc-----eEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence            34533444455677777764332     1122 2567788999999999999986 579999999988     7655433


Q ss_pred             ccccccc------cccccccEEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEEc
Q psy8448         139 KYQAQDN------FMLMEEAVMSLAYSRDSEMLASGS---------------------------------QSGKVKIWKI  179 (482)
Q Consensus       139 ~~~~~~~------~~~h~~~i~~l~~~~~~~~l~~~~---------------------------------~dg~i~iwd~  179 (482)
                      .......      ...+...+.+++|+|||++|++++                                 .+..|.+||+
T Consensus       163 ~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~  242 (706)
T 2z3z_A          163 IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL  242 (706)
T ss_dssp             SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred             cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence            2221100      000112358899999999999987                                 4467999999


Q ss_pred             CCCeEeEEeec-ccCCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCCceEEEee-c-ccc---ceeEEEEcC--C
Q psy8448         180 ATGQCLRKLEK-AHSLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSGKMLKEFR-G-HSS---FVNDITFTA--D  246 (482)
Q Consensus       180 ~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-~-~~~---~i~~l~~~~--~  246 (482)
                      .+++....... .+...+.+++|+|+|+.|++++.++     .|++||+.+++....+. . +..   .+.+++|+|  +
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d  322 (706)
T 2z3z_A          243 ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN  322 (706)
T ss_dssp             TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred             CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC
Confidence            98876544321 4567799999999999999887775     89999999984443332 1 222   246789999  9


Q ss_pred             CCEEEEEeCCCcEEEEECC-CCceeeeeeccCCCccceeE-EEEcCCCCCEEEEEeCCC----eEEEEEcCCcEEEEecC
Q psy8448         247 GHSVLSASSDGTVKMWNLK-TTECTSTFKSLGASDIAVNS-IHLLPKNTEHFVVCNKTN----TVVIMNMQGQIVRSLSS  320 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~  320 (482)
                      |+++++++.++.+++|+++ ++.....+.   .+...+.. ++|+|++..++++++.++    .|..||..+.....+..
T Consensus       323 g~~l~~~~~~g~~~l~~~~~~~~~~~~l~---~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  399 (706)
T 2z3z_A          323 NQFIWQSRRDGWNHLYLYDTTGRLIRQVT---KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTP  399 (706)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSCEEEECC---CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCC
T ss_pred             CEEEEEEccCCccEEEEEECCCCEEEecC---CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccC
Confidence            9999999999999999876 555555554   55666766 799999954555566555    66777775444455442


Q ss_pred             CcccCcCEEEEEEcCCCCEEEEEeCC----cEEEEEee
Q psy8448         321 GKREGGDFLCCTTSPRGEWIYCVGED----MVLVVRLI  354 (482)
Q Consensus       321 ~~~~~~~v~~~~~~~~g~~l~~~~~d----g~i~iw~~  354 (482)
                          ...+.+++|+|||++++..+.+    +.+++|+.
T Consensus       400 ----~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          400 ----ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             ----SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             ----CCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence                4568899999999998876543    56885554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=2.1e-22  Score=199.36  Aligned_cols=233  Identities=13%  Similarity=0.118  Sum_probs=167.6

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---CCcE
Q psy8448          99 SKSHVECARFSPDGQYLITGSV-DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---SGKV  174 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---dg~i  174 (482)
                      +..+|++++|+|||+.||+++. ||++.||++.+++...... .       +...+..++|+|+ +.+++++.   +...
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~-~-------~~~~~~~~~~spd-~~l~~~~~~~g~~~~   90 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR-E-------PINSVLDPHYGVG-RVILVRDVSKGAEQH   90 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS-S-------CCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec-c-------cccccccccCCCC-eEEEEeccCCCCcce
Confidence            3557999999999999999886 9999999986655433221 1       1257899999999 77777765   4556


Q ss_pred             EEEEcCC--CeEeEEeecccCCCeEEEEEccCCCE-EEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448         175 KIWKIAT--GQCLRKLEKAHSLGVTCIQFSRDNSQ-ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       175 ~iwd~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      .+|.+..  ......+.  ....+...+|+|+++. +++...++.+.+||+.+++.......+.   .+++|+|||++|+
T Consensus        91 ~l~~~~~~~~g~~~~l~--~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la  165 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQRLE--AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIA  165 (582)
T ss_dssp             EEEEEETTSTTCCEECT--TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEE
T ss_pred             EEEEEeccCCCcccccc--CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEE
Confidence            6665533  22222332  2234556788888854 3444445556699999887655544333   8899999999999


Q ss_pred             EEeCC----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcEEEEecCCcccC
Q psy8448         252 SASSD----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN--TVVIMNMQGQIVRSLSSGKREG  325 (482)
Q Consensus       252 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~  325 (482)
                      +++.+    +.|++||+.+++.. .+.   .+...+..++|+|+| +.++++..++  .|++||+.+.....+..+   .
T Consensus       166 ~~~~~~~~~~~i~~~d~~~g~~~-~l~---~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~---~  237 (582)
T 3o4h_A          166 GLGFFGGGRVSLFTSNLSSGGLR-VFD---SGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVEDLELP---S  237 (582)
T ss_dssp             EEEEEETTEEEEEEEETTTCCCE-EEC---CSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEEECCCS---C
T ss_pred             EEEEcCCCCeEEEEEcCCCCCce-Eee---cCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEEEccCC---C
Confidence            88776    77999999988754 333   667788999999999 7777888888  899999954444444333   3


Q ss_pred             cCEEEEE--------EcCCCCEEEEEeCCcEEEEEe
Q psy8448         326 GDFLCCT--------TSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       326 ~~v~~~~--------~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ..+..++        |+|||..+++++.|+.+++|+
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence            3444455        999999999999999999554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=9.5e-22  Score=180.62  Aligned_cols=260  Identities=15%  Similarity=0.155  Sum_probs=187.9

Q ss_pred             CCccccccccccccccccceeeecCCCC-cEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKS-HVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      ++.+.+|+.....    ....+..++.. .+.+++|+|+|++++ ++..++.|.+||+.+++....+......   .|..
T Consensus        10 ~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~   82 (337)
T 1pby_B           10 PDKLVVIDTEKMA----VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE---ERVK   82 (337)
T ss_dssp             TTEEEEEETTTTE----EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---EEEE
T ss_pred             CCeEEEEECCCCc----EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---cccc
Confidence            4556666654322    22333334433 478899999998764 5556789999999998877655433100   0123


Q ss_pred             cEEEEEEcCCCCEEEEEe------------CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448         152 AVMSLAYSRDSEMLASGS------------QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI  219 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i  219 (482)
                      .+..++|+|++++|++++            .++.|.+||+.+++....+.  ....+.+++|+|++++|+++  ++.|.+
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe--CCeEEE
Confidence            567899999999998886            57999999999988877764  24567889999999988888  689999


Q ss_pred             EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC------------------------cEEEEECCCCceeeeeec
Q psy8448         220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG------------------------TVKMWNLKTTECTSTFKS  275 (482)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg------------------------~i~i~d~~~~~~~~~~~~  275 (482)
                      ||+.+++....+..+.. ...+.|+|++..++..+..+                        .|.+||+.+++.. .+. 
T Consensus       159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~-  235 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE-  235 (337)
T ss_dssp             EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE-
T ss_pred             EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee-
Confidence            99999988877764431 11237889988766544332                        4689999998765 222 


Q ss_pred             cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         276 LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       276 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ...+...+.+++|+|++ ..++++  ++.|.+||+ +++.+..+..    ...+.+++|+|+|++|++++.++.|++|++
T Consensus       236 ~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          236 VRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             cCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCcceecC----CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            12445567889999998 666666  799999999 4666666553    235678999999999999999999995443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=9.1e-21  Score=175.97  Aligned_cols=242  Identities=15%  Similarity=0.213  Sum_probs=166.9

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCC----CeEEEEecCC--CceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CC
Q psy8448          99 SKSHVECARFSPDGQYLITGSVD----GFIEVWNFTT--GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QS  171 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~d----g~v~iwd~~~--~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~d  171 (482)
                      +...+..++|+|+|++|++++.+    +.|.+|++..  ++........      .+...+..+++  ++++|++++ .+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~------~~~~~p~~~~~--dg~~l~~~~~~~  119 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK------TMGADPCYLTT--NGKNIVTANYSG  119 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE------CSSSCEEEEEE--CSSEEEEEETTT
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec------cCCCCcEEEEE--CCCEEEEEECCC
Confidence            66778889999999999998875    7999999875  3332211111      12345677777  788777776 57


Q ss_pred             CcEEEEEcCCCeEeEEe----e-c--------ccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCce------E---
Q psy8448         172 GKVKIWKIATGQCLRKL----E-K--------AHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKM------L---  228 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~----~-~--------~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~------~---  228 (482)
                      +.|.+|++.....+..+    . .        .+...+.+++|+|+|+++++++. ++.|.+|++.....      +   
T Consensus       120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence            89999999754332211    0 0        11233588999999997766654 78999998875431      1   


Q ss_pred             ----EEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         229 ----KEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       229 ----~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                          .....+...+..++|+|+++++++++ .++.|.+||+.+++.  +..+.....+......++|+|++ ++++++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~  278 (361)
T 3scy_A          200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNR  278 (361)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEEC
T ss_pred             ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECC
Confidence                11223455678999999999888777 689999999987654  23333222333456899999999 66655554


Q ss_pred             --CCeEEEEEcC---Cc--EEEEecCCcccCcCEEEEEEcCCCCEEEEEe-CCcEEEEEe
Q psy8448         302 --TNTVVIMNMQ---GQ--IVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-EDMVLVVRL  353 (482)
Q Consensus       302 --d~~i~i~d~~---~~--~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~  353 (482)
                        ++.|.+|+++   ++  .+..+..    ...+..++|+|+|++|++++ .++.+.+|+
T Consensus       279 ~~~~~i~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          279 LKADGVAIFKVDETNGTLTKVGYQLT----GIHPRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             SSSCEEEEEEECTTTCCEEEEEEEEC----SSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCcEEEeeEecC----CCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence              5899999984   33  2223322    34567899999999999887 678999763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=2.2e-21  Score=179.13  Aligned_cols=247  Identities=14%  Similarity=0.177  Sum_probs=169.2

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCc
Q psy8448          98 GSKSHVECARFSPDGQYLITGSV---DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGK  173 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~  173 (482)
                      .+...+..++|+|+|+ |++++.   ++.|.+|++.+++......      ...+...+..++|+|++++|++++ .++.
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~------~~~~~~~p~~~a~spdg~~l~~~~~~~~~  109 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT------VVAPGTPPAYVAVDEARQLVYSANYHKGT  109 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE------EEEESCCCSEEEEETTTTEEEEEETTTTE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee------eecCCCCCEEEEECCCCCEEEEEeCCCCE
Confidence            4456788899999999 555443   6899999997765322111      111346788999999999998888 6789


Q ss_pred             EEEEEcCC-Ce--EeEEeecc--------cCCCeEEEEEccCCCEEEEEECCCeEEEEeCC-CCceEE--Eeec-cccce
Q psy8448         174 VKIWKIAT-GQ--CLRKLEKA--------HSLGVTCIQFSRDNSQILTASFDTYVRIHGLK-SGKMLK--EFRG-HSSFV  238 (482)
Q Consensus       174 i~iwd~~~-~~--~~~~~~~~--------~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~i  238 (482)
                      |.+|++.. +.  .+..+...        ....+.+++|+|+++.+++...++.|.+|++. +++...  .+.. ....+
T Consensus       110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p  189 (347)
T 3hfq_A          110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP  189 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred             EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence            99999963 32  23333111        12248899999999966666668899999998 454322  2222 23367


Q ss_pred             eEEEEcCCCCEEEEE-eCCCcEEEEECCC--Cce--eeeeeccCC---CccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         239 NDITFTADGHSVLSA-SSDGTVKMWNLKT--TEC--TSTFKSLGA---SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       239 ~~l~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                      ..++|+|+|++++++ ..++.|.+|++..  ++.  ...+.....   ....+..++|+|+|..++++...++.|.+|++
T Consensus       190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            889999999976664 5678999999874  432  222221111   11458899999999445567777999999998


Q ss_pred             C--C--cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC-cEEEEEee
Q psy8448         311 Q--G--QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED-MVLVVRLI  354 (482)
Q Consensus       311 ~--~--~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d-g~i~iw~~  354 (482)
                      .  +  ..+..+..+   ...+..++|+|||++|++++.+ +.+.+|++
T Consensus       270 ~~~g~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          270 TADGHLTLIQQISTE---GDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             CGGGCEEEEEEEECS---SSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCcEEEeEEEecC---CCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            4  2  223333322   3456899999999999888764 89997754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=1.7e-21  Score=179.86  Aligned_cols=232  Identities=12%  Similarity=0.111  Sum_probs=173.2

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCe
Q psy8448         105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGKVKIWKIATGQ  183 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~  183 (482)
                      .+++++++.++++++.++.|++||+.+++....+....       ...+..++|+|+++++++ +..++.|.+||+.+++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-------KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-------CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-------CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence            45678889999999999999999999988776655431       124678999999986655 4568999999999998


Q ss_pred             EeEEeeccc-----CCCeEEEEEccCCCEEEEEECC------------CeEEEEeCCCCce---EEEeeccccceeEEEE
Q psy8448         184 CLRKLEKAH-----SLGVTCIQFSRDNSQILTASFD------------TYVRIHGLKSGKM---LKEFRGHSSFVNDITF  243 (482)
Q Consensus       184 ~~~~~~~~~-----~~~v~~i~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~---~~~~~~~~~~i~~l~~  243 (482)
                      ....+...+     ...+..++|+|+|+++++++.+            +.|.+||+.+++.   +..+. +...+.+++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~  155 (349)
T 1jmx_B           77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRA  155 (349)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEE
T ss_pred             EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeE
Confidence            887764333     2337889999999999998865            8999999988543   33333 3446889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCC---------------------------------------------
Q psy8448         244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA---------------------------------------------  278 (482)
Q Consensus       244 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------------------------------  278 (482)
                      +|+++ +++++  +.|.+||+.+++....+.....                                             
T Consensus       156 s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  232 (349)
T 1jmx_B          156 ADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  232 (349)
T ss_dssp             CTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             CCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence            99999 66554  3499999999887665542100                                             


Q ss_pred             --------------------CccceeEEEEcC-CCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCC
Q psy8448         279 --------------------SDIAVNSIHLLP-KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR  336 (482)
Q Consensus       279 --------------------~~~~v~~i~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~  336 (482)
                                          ....+..++++| ++ ..++++  ++.|.+||+ +++.+..+...    ..+.+++|+|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~d  305 (349)
T 1jmx_B          233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIKAANLD----HTYYCVAFDKK  305 (349)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECSS
T ss_pred             eeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEEEEEcCC----CCccceEECCC
Confidence                                001345667789 87 666666  889999999 56666666532    34678999999


Q ss_pred             CCEEEEEeCCcEEEEEee
Q psy8448         337 GEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       337 g~~l~~~~~dg~i~iw~~  354 (482)
                      |++|++++.++.|.+|+.
T Consensus       306 g~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          306 GDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             SSCEEEESBSSEEEEEET
T ss_pred             CCEEEEecCCCeEEEEec
Confidence            999999989999995543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=4.9e-22  Score=201.86  Aligned_cols=261  Identities=10%  Similarity=0.091  Sum_probs=177.6

Q ss_pred             CCccccccccccccccccceeeecCCCC---cEEEEEEcCCCCEEEEEeC---------CCeEEEEecCCCceeeccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKS---HVECARFSPDGQYLITGSV---------DGFIEVWNFTTGKIRKDLKYQ  141 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~  141 (482)
                      ++.+.+|+.....     ...+..+|..   .|.+++|||||++|++++.         ++.|++||+.+++....... 
T Consensus        35 d~~i~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-  108 (719)
T 1z68_A           35 DNNIVLYNIETGQ-----SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-  108 (719)
T ss_dssp             TSCEEEEESSSCC-----EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-
T ss_pred             CCCEEEEEcCCCc-----EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-
Confidence            4556666654332     2233333333   4899999999999998876         68999999998876321111 


Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCe-----------------EEEEEccC
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGV-----------------TCIQFSRD  204 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----------------~~i~~~~~  204 (482)
                              ...+..++|+|||+.|+++. ++.|++||+.+++.......++...+                 .+++|+||
T Consensus       109 --------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD  179 (719)
T 1z68_A          109 --------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN  179 (719)
T ss_dssp             --------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT
T ss_pred             --------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC
Confidence                    13578899999999999986 78999999988876543322333222                 48999999


Q ss_pred             CCEEEEEECCC----------------------------------eEEEEeCCCCceE---E-----EeeccccceeEEE
Q psy8448         205 NSQILTASFDT----------------------------------YVRIHGLKSGKML---K-----EFRGHSSFVNDIT  242 (482)
Q Consensus       205 ~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~---~-----~~~~~~~~i~~l~  242 (482)
                      |++|++++.|.                                  .|++||+.+++..   .     .+.+|...+..++
T Consensus       180 G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (719)
T 1z68_A          180 GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLT  259 (719)
T ss_dssp             SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEE
T ss_pred             CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeE
Confidence            99999887552                                  7899999887653   1     2335778899999


Q ss_pred             EcCCCCEEEEEeCC----CcEEEEE----CCCCceeeeee-ccCCCcccee-----EEEEcCCCCCEEEE-EeCCC--eE
Q psy8448         243 FTADGHSVLSASSD----GTVKMWN----LKTTECTSTFK-SLGASDIAVN-----SIHLLPKNTEHFVV-CNKTN--TV  305 (482)
Q Consensus       243 ~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~-~~~~~~~~v~-----~i~~~~~~~~~l~~-~~~d~--~i  305 (482)
                      |+||++++++....    ..|.+||    ..++++...+. ....+...+.     .+.|+|+|..+++. +..++  .|
T Consensus       260 ~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l  339 (719)
T 1z68_A          260 WVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI  339 (719)
T ss_dssp             ESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE
T ss_pred             EeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEE
Confidence            99998776664432    2488899    77776554441 0014455555     78999999555543 44555  56


Q ss_pred             EEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC-----cEEEEEe
Q psy8448         306 VIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED-----MVLVVRL  353 (482)
Q Consensus       306 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d-----g~i~iw~  353 (482)
                      .+||+.+.....+..+   ...+..+.+. +++.|+..+.+     +...+|.
T Consensus       340 ~~~~~~~~~~~~lt~~---~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~  388 (719)
T 1z68_A          340 HYIKDTVENAIQITSG---KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR  388 (719)
T ss_dssp             EEESSCSTTCEECSCS---SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred             EEEECCCCceEecccC---ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence            6777755445555543   4557777777 88888776665     7778554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=5.2e-21  Score=179.45  Aligned_cols=240  Identities=13%  Similarity=0.045  Sum_probs=159.6

Q ss_pred             CCCCcEEE-----EEEcCCCCEEEEEeC-CC--eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe
Q psy8448          98 GSKSHVEC-----ARFSPDGQYLITGSV-DG--FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS  169 (482)
Q Consensus        98 ~h~~~v~~-----~~~s~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~  169 (482)
                      .|......     .+|||||++|+.++. +|  .|.+||+.+++.......+        ...+..+.|+|+++.|+.++
T Consensus        28 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~--------~~~~~~~~~spdg~~l~~~~   99 (388)
T 3pe7_A           28 PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR--------GDNTFGGFLSPDDDALFYVK   99 (388)
T ss_dssp             CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS--------CBCSSSCEECTTSSEEEEEE
T ss_pred             CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC--------CCCccceEEcCCCCEEEEEe
Confidence            45555555     789999999998886 66  4888999888765544322        23444678999999999999


Q ss_pred             CCCcEEEEEcCCCeEeEEeecccCCCeEEEE--EccCCCEEEEE----------------------ECCCeEEEEeCCCC
Q psy8448         170 QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ--FSRDNSQILTA----------------------SFDTYVRIHGLKSG  225 (482)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~~~----------------------~~dg~i~i~d~~~~  225 (482)
                      .++.|++||+.+++....+ ..+...+....  ++|++.+++..                      ..+..|.+||+.++
T Consensus       100 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A          100 DGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             TTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             CCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            9999999999998876655 33444443333  48899888743                      23468999999988


Q ss_pred             ceEEEeeccccceeEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeeeeeccCCCc-cceeEEEEcCCCCCEEE
Q psy8448         226 KMLKEFRGHSSFVNDITFTA-DGHSVLSASSD------GTVKMWNLKTTECTSTFKSLGASD-IAVNSIHLLPKNTEHFV  297 (482)
Q Consensus       226 ~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~  297 (482)
                      +... +..+...+..+.|+| +++.|+....+      ..|.++|...++......   ... ..+..+.|+|+|..+++
T Consensus       179 ~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~spdg~~l~~  254 (388)
T 3pe7_A          179 ESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGESCTHEFWVPDGSALVY  254 (388)
T ss_dssp             CEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEEEEEEEECTTSSCEEE
T ss_pred             ceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcccccceECCCCCEEEE
Confidence            7544 444667789999999 99998887753      378888887655433221   221 35778999999955545


Q ss_pred             EEeCCC----eEEEEEcCCcEEEEecCCcccCc---CEEEEEEcCCCCEEEEE---------eCCcEEE
Q psy8448         298 VCNKTN----TVVIMNMQGQIVRSLSSGKREGG---DFLCCTTSPRGEWIYCV---------GEDMVLV  350 (482)
Q Consensus       298 ~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~g~~l~~~---------~~dg~i~  350 (482)
                      ++..++    .|++||+.+.....+........   .....+|+|||+.|+..         ..+..|+
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~  323 (388)
T 3pe7_A          255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY  323 (388)
T ss_dssp             EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred             EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence            544332    39999995333222221110000   01123789999988854         3455677

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=3.7e-20  Score=175.22  Aligned_cols=211  Identities=13%  Similarity=0.069  Sum_probs=149.7

Q ss_pred             CCCCcEEEEEEcCCCCEEE----EEeCCCeEEEEecCCCcee---eccccccccccccccccEEEEEEcCC-CCEEEEEe
Q psy8448          98 GSKSHVECARFSPDGQYLI----TGSVDGFIEVWNFTTGKIR---KDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGS  169 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~----s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~  169 (482)
                      .|...|++++|+|+|++|+    +|+.|+.|+|||+.++...   ..........+.+|...|.+++|+|+ +++|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            5778899999999999999    7888999999998764100   00001112334568899999999997 88999999


Q ss_pred             CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc-------ccceeEEE
Q psy8448         170 QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH-------SSFVNDIT  242 (482)
Q Consensus       170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~l~  242 (482)
                      .||+|++||++++...... ..|...|.+++|+|+|++|++|+.||.|++||++ ++....+..|       ...|.+++
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~  247 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL  247 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred             CCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence            9999999999998766555 5688899999999999999999999999999998 6655555433       33799999


Q ss_pred             EcCCCCEEEEE-eCCC------cEEEEECCCCce-----eeeeecc----CCCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         243 FTADGHSVLSA-SSDG------TVKMWNLKTTEC-----TSTFKSL----GASDIAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       243 ~~~~~~~l~~~-~~dg------~i~i~d~~~~~~-----~~~~~~~----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                      |++++.++++. +.+|      .+++|++++.+.     ...+...    .....+...+...++..-++++.+..+.|.
T Consensus       248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~  327 (434)
T 2oit_A          248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVS  327 (434)
T ss_dssp             EEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCE
T ss_pred             EecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCcee
Confidence            99988776543 3443      389999986531     1111111    012223334444566633344444455566


Q ss_pred             EEEc
Q psy8448         307 IMNM  310 (482)
Q Consensus       307 i~d~  310 (482)
                      +...
T Consensus       328 vl~~  331 (434)
T 2oit_A          328 ILAR  331 (434)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6665

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=1e-21  Score=199.55  Aligned_cols=238  Identities=12%  Similarity=0.106  Sum_probs=164.0

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---------CCcEE
Q psy8448         105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---------SGKVK  175 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---------dg~i~  175 (482)
                      +++|+|+|+++++ +.|+.|++||+.+++....+..+...     ...+.+++|+|||++|++++.         ++.|+
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMK-----SVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHH-----TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEcccccc-----ccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            6789999965554 46999999999998866544332110     014889999999999999876         78999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe-eccccce----------------
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF-RGHSSFV----------------  238 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i----------------  238 (482)
                      +||+.+++.+...  .....+..++|+|||+.|+.+. ++.|++||+.+++..... .++...|                
T Consensus        94 ~~d~~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           94 IYDLSNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             EEETTTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             EEECCCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence            9999988763111  1124688999999999999986 789999999888765432 2222212                


Q ss_pred             -eEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCcee--eeee---ccCC
Q psy8448         239 -NDITFTADGHSVLSASSDG----------------------------------TVKMWNLKTTECT--STFK---SLGA  278 (482)
Q Consensus       239 -~~l~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~--~~~~---~~~~  278 (482)
                       .+++|+|||++|++++.|.                                  .|++||+.+++..  ..+.   .+..
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence             4899999999999887552                                  7889999987642  1111   1125


Q ss_pred             CccceeEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCcEEEEecC--CcccCcCEE-----EEEEcCCCCEEEE-
Q psy8448         279 SDIAVNSIHLLPKNTEHFVVCNKT----NTVVIMN----MQGQIVRSLSS--GKREGGDFL-----CCTTSPRGEWIYC-  342 (482)
Q Consensus       279 ~~~~v~~i~~~~~~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~~--~~~~~~~v~-----~~~~~~~g~~l~~-  342 (482)
                      +...+..++|+|++ .++++....    ..|.+||    ..+.....+..  ...+...+.     .++|+|||+.|+. 
T Consensus       251 ~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          251 SDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             SCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             CcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence            67789999999996 666664432    2488899    64332222220  001133343     6899999996654 


Q ss_pred             -EeCCcEEEEE
Q psy8448         343 -VGEDMVLVVR  352 (482)
Q Consensus       343 -~~~dg~i~iw  352 (482)
                       ...+|...||
T Consensus       330 ~~~~~g~~~l~  340 (719)
T 1z68_A          330 FSDKDGYKHIH  340 (719)
T ss_dssp             EECTTSCEEEE
T ss_pred             EEccCCceEEE
Confidence             5567766655

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=2.1e-19  Score=166.71  Aligned_cols=229  Identities=15%  Similarity=0.189  Sum_probs=151.8

Q ss_pred             CCEEEEEe----CCCeEEEEecC--CCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC----CcEEEEEcCC
Q psy8448         112 GQYLITGS----VDGFIEVWNFT--TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS----GKVKIWKIAT  181 (482)
Q Consensus       112 ~~~l~s~~----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~  181 (482)
                      ..+++.|+    .++.|.+|.+.  +++.......        +...+..++|+|++++|++++.+    +.|.+|++..
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--------~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~   84 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--------EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK   84 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--------ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--------cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence            34555564    35689998764  4544322221        24667889999999999999875    7999998865


Q ss_pred             --CeE--eEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEe------ec--------cccceeEEE
Q psy8448         182 --GQC--LRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEF------RG--------HSSFVNDIT  242 (482)
Q Consensus       182 --~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~------~~--------~~~~i~~l~  242 (482)
                        ++.  +... ..+......+++  ++++|++++ .++.|.+|++.....+..+      .+        +...+.+++
T Consensus        85 ~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  161 (361)
T 3scy_A           85 EKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR  161 (361)
T ss_dssp             TTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred             CCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence              433  2222 224456777787  788877776 5789999999754332211      11        122357899


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEECCCCce------e------eeeeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEE
Q psy8448         243 FTADGHSVLSAS-SDGTVKMWNLKTTEC------T------STFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIM  308 (482)
Q Consensus       243 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~------~------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~  308 (482)
                      |+|+++++++++ .++.|.+|++.....      +      .....  ........++|+|++ +++++++ .++.|.+|
T Consensus       162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~  238 (361)
T 3scy_A          162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV--APGSGPRHLIFNSDG-KFAYLINEIGGTVIAF  238 (361)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC--CTTCCEEEEEECTTS-SEEEEEETTTCEEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec--CCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEE
Confidence            999999776665 478999999875431      1      11111  334557899999999 5555555 78999999


Q ss_pred             EcC-CcE--EEEecCCcccCcCEEEEEEcCCCCEEEEEeCC--cEEEEEee
Q psy8448         309 NMQ-GQI--VRSLSSGKREGGDFLCCTTSPRGEWIYCVGED--MVLVVRLI  354 (482)
Q Consensus       309 d~~-~~~--~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d--g~i~iw~~  354 (482)
                      ++. +..  +..+.....+......++|+|||++|++++.+  +.|.+|++
T Consensus       239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence            994 432  23333322223456899999999999777665  88996544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=1.6e-19  Score=167.63  Aligned_cols=233  Identities=10%  Similarity=0.100  Sum_probs=152.0

Q ss_pred             EEEEEeCC--CeEEEEec--CCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCeEeEEe
Q psy8448         114 YLITGSVD--GFIEVWNF--TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA-TGQCLRKL  188 (482)
Q Consensus       114 ~l~s~~~d--g~v~iwd~--~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~  188 (482)
                      +|+.|+..  +.|.+|++  .+++.........     .....+..++|+|++++|++++.+ .|.+|++. +++.....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~-----~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~   77 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEI-----PQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEEC-----CTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEcc-----CCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee
Confidence            35556543  46877765  4454322111100     012357889999999999999888 99999997 77665433


Q ss_pred             ecccCCCeEEEEEccCCCE--EEEEE-------------CCCeEEEEeCC-CCceEEEee----ccccceeEEEEcCCCC
Q psy8448         189 EKAHSLGVTCIQFSRDNSQ--ILTAS-------------FDTYVRIHGLK-SGKMLKEFR----GHSSFVNDITFTADGH  248 (482)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~----~~~~~i~~l~~~~~~~  248 (482)
                      .........+++|+|+|++  ++++.             .++.+.+|++. +++....+.    .+...+.+++|+|+|+
T Consensus        78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence            2111123556899999985  44542             68999999997 466544433    2456789999999999


Q ss_pred             EEEEEeC-CCcEEEEECC-CCceee--eeeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEcC---CcEE---EE
Q psy8448         249 SVLSASS-DGTVKMWNLK-TTECTS--TFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNMQ---GQIV---RS  317 (482)
Q Consensus       249 ~l~~~~~-dg~i~i~d~~-~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~~---~~~~---~~  317 (482)
                      +|++++. ++.|.+||+. +++...  .+.. ..+...+..++|+|++ +++++++ .++.|.+|+++   ++..   ..
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~  235 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGEVELVGSVDA-PDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHS  235 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEEC-SSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCEEEeeeEec-CCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence            8887764 6789999998 676432  2210 0124568899999999 5666555 57899999873   4432   12


Q ss_pred             ecCCc----ccCc------CEEEEE-EcCCCCEEEEEeCCc------EEEEEee
Q psy8448         318 LSSGK----REGG------DFLCCT-TSPRGEWIYCVGEDM------VLVVRLI  354 (482)
Q Consensus       318 ~~~~~----~~~~------~v~~~~-~~~~g~~l~~~~~dg------~i~iw~~  354 (482)
                      +....    .+..      .+..++ |+|||++|++++.+.      .|.+|++
T Consensus       236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence            22111    1111      478899 999999998776432      8885543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=7.8e-20  Score=169.74  Aligned_cols=245  Identities=10%  Similarity=0.156  Sum_probs=169.5

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecC-CCceeeccccccccccccccccEEEEEEcCCCCE--EEEEe------
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFT-TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM--LASGS------  169 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~--l~~~~------  169 (482)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++.........       .+.+..++|+|+|++  ++++.      
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~-------~g~~~~~~~spdg~~l~~~~~~~~~~~~  109 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI-------GGHPRANDADTNTRAIFLLAAKQPPYAV  109 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-------CSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-------CCCCccEEECCCCCEEEEEEecCCccee
Confidence            44568899999999999998877 99999997 776543222110       012445889999994  44543      


Q ss_pred             -------CCCcEEEEEcC-CCeEeEEeec---ccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCC-CCceE--EEee--
Q psy8448         170 -------QSGKVKIWKIA-TGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLK-SGKML--KEFR--  232 (482)
Q Consensus       170 -------~dg~i~iwd~~-~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~-~~~~~--~~~~--  232 (482)
                             .+|.+.+|++. +++....+..   .+...+.+++|+|+|++++++.. ++.|++||+. +++..  ..+.  
T Consensus       110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T 1jof_A          110 YANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             EEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred             ccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence                   68999999997 4554433321   24567999999999998887764 6799999998 67643  2333  


Q ss_pred             ccccceeEEEEcCCCCEEEEEeC-CCcEEEEECC--CCceee---eeeccCC----Ccc------ceeEEE-EcCCCCCE
Q psy8448         233 GHSSFVNDITFTADGHSVLSASS-DGTVKMWNLK--TTECTS---TFKSLGA----SDI------AVNSIH-LLPKNTEH  295 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~---~~~~~~~----~~~------~v~~i~-~~~~~~~~  295 (482)
                      .+...+..++|+|+|+++++++. ++.|.+|+++  +++...   .+.....    +..      .+..++ |+|+| ++
T Consensus       190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~  268 (365)
T 1jof_A          190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KY  268 (365)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SE
T ss_pred             CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CE
Confidence            23567899999999999988775 6889999875  455421   2222211    121      578999 99999 56


Q ss_pred             EEEEeC-CC-----eEEEEEcC--CcEEEE---ecCCcccCcCEEEEEEcC---CCCEEEEEeCC-cEEEEEeeh
Q psy8448         296 FVVCNK-TN-----TVVIMNMQ--GQIVRS---LSSGKREGGDFLCCTTSP---RGEWIYCVGED-MVLVVRLIQ  355 (482)
Q Consensus       296 l~~~~~-d~-----~i~i~d~~--~~~~~~---~~~~~~~~~~v~~~~~~~---~g~~l~~~~~d-g~i~iw~~~  355 (482)
                      +++++. ++     .|.+|++.  ++....   ....   ......++|+|   ||++|++++.+ +.|.+|+++
T Consensus       269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~---~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP---TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS---SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC---CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence            655543 33     89999983  443321   2211   23345689999   89999998875 899987765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=3.8e-20  Score=170.85  Aligned_cols=161  Identities=10%  Similarity=0.108  Sum_probs=121.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEE-EECCCeEEEEeCCCCceEEEeec
Q psy8448         155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT-ASFDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       155 ~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~  233 (482)
                      .+++++++.++++++.++.|.+||+.+++.+..+..+....+..++|+|+++++++ +..++.|.+||+.+++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678888899999999999999999999888774333235789999999987654 45688999999999988777663


Q ss_pred             c------ccceeEEEEcCCCCEEEEEeCC------------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCE
Q psy8448         234 H------SSFVNDITFTADGHSVLSASSD------------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       234 ~------~~~i~~l~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  295 (482)
                      .      ...+.+++|+|++++|++++.+            +.|.+||+.+++....+... .+...+.+++|+|++ . 
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg-~-  160 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDG-S-  160 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTS-C-
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCC-c-
Confidence            2      2337899999999999988865            89999999885543322211 223358889999999 5 


Q ss_pred             EEEEeCCCeEEEEEc-CCcEEEEecC
Q psy8448         296 FVVCNKTNTVVIMNM-QGQIVRSLSS  320 (482)
Q Consensus       296 l~~~~~d~~i~i~d~-~~~~~~~~~~  320 (482)
                      +++++  +.|.+||. +++....+..
T Consensus       161 l~~~~--~~i~~~d~~~~~~~~~~~~  184 (349)
T 1jmx_B          161 LYVAG--PDIYKMDVKTGKYTVALPL  184 (349)
T ss_dssp             EEEES--SSEEEECTTTCCEEEEECS
T ss_pred             EEEcc--CcEEEEeCCCCceeccccc
Confidence            44443  34999999 5666665543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=2.4e-20  Score=184.55  Aligned_cols=187  Identities=14%  Similarity=0.119  Sum_probs=132.6

Q ss_pred             cccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC---CCeEEEEeCCC-
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQ-SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF---DTYVRIHGLKS-  224 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~i~d~~~-  224 (482)
                      ..+|.+++|+|||++|++++. ||++.||++.+++. ..+...+...+..++|+|+ +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            468999999999999999886 99999999966654 4442333367999999999 77777765   44455554432 


Q ss_pred             --CceEEEeeccccceeEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         225 --GKMLKEFRGHSSFVNDITFTADGHS-VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       225 --~~~~~~~~~~~~~i~~l~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                        +... .+... ..+...+|+|+++. +++.+.++.+.+||+.+++......   . ..  .+++|+|+| +.+++++.
T Consensus        99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~---~-~~--~~~~~spDG-~~la~~~~  169 (582)
T 3o4h_A           99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR---L-PG--FGFVSDIRG-DLIAGLGF  169 (582)
T ss_dssp             STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE---E-SS--CEEEEEEET-TEEEEEEE
T ss_pred             CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec---C-CC--ceEEECCCC-CEEEEEEE
Confidence              2222 33322 23446688888753 3444445556699999887655443   2 22  789999999 77887766


Q ss_pred             C----CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc--EEE
Q psy8448         302 T----NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM--VLV  350 (482)
Q Consensus       302 d----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg--~i~  350 (482)
                      +    +.|++||+.+.....+..+   ...+..++|+|||++|+++..++  .|+
T Consensus       170 ~~~~~~~i~~~d~~~g~~~~l~~~---~~~~~~~~~SpDG~~l~~~~~~~~~~i~  221 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLRVFDSG---EGSFSSASISPGMKVTAGLETAREARLV  221 (582)
T ss_dssp             EETTEEEEEEEETTTCCCEEECCS---SCEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred             cCCCCeEEEEEcCCCCCceEeecC---CCccccceECCCCCEEEEccCCCeeEEE
Confidence            6    7899999865445566544   56789999999999999888888  666

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=3.7e-18  Score=152.81  Aligned_cols=247  Identities=13%  Similarity=0.187  Sum_probs=183.4

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEc-CCCCEEEEEeC-CCcEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS-RDSEMLASGSQ-SGKVK  175 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~~~l~~~~~-dg~i~  175 (482)
                      +|-..+.+++++++++++++...++.|.+||.. ++....+....  ...++...+..+++. ++++++++... ++.|.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~--~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG--KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS--SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC--CCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            556789999999999988888889999999977 55444332211  111234578999994 67766666543 78999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee--ccccceeEEEEcCCCCEEEEE
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR--GHSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~  253 (482)
                      +|| .+++.+..+...+...+..++++|++..+++...++.|.+||. .++.+..+.  .+...+.+++++++++++++.
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            999 5677776664445567899999999987777777899999996 456665554  344568999999999977777


Q ss_pred             eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC-eEEEEEcCCcEEEEecCCcccCcCEEEEE
Q psy8448         254 SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN-TVVIMNMQGQIVRSLSSGKREGGDFLCCT  332 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  332 (482)
                      ..++.|.+||.. ++.+..+... ++...+..+++++++ .++++...++ .|.+|+.+++.+..+..+.. ...+.+++
T Consensus       182 ~~~~~i~~~~~~-g~~~~~~~~~-g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~~~~i~  257 (286)
T 1q7f_A          182 NRAHCVKVFNYE-GQYLRQIGGE-GITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISALESKVK-HAQCFDVA  257 (286)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCT-TTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEEEESSC-CSCEEEEE
T ss_pred             CCCCEEEEEcCC-CCEEEEEccC-CccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCEEEEEcccCC-CCcceeEE
Confidence            778999999974 4555555311 223567899999998 7888877776 99999998888777765321 33478999


Q ss_pred             EcCCCCEEEEEeCCcEEEEEee
Q psy8448         333 TSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       333 ~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ++|+|+++++ +.|+.|++|++
T Consensus       258 ~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          258 LMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             EETTTEEEEE-ETTTEEEEEEC
T ss_pred             ECCCCcEEEE-CCCCeEEEEEc
Confidence            9999986666 67999997764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=4e-18  Score=155.67  Aligned_cols=245  Identities=13%  Similarity=0.116  Sum_probs=183.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCC------------------------CeEEEEecCCCceeeccccccccccccccccEEE
Q psy8448         100 KSHVECARFSPDGQYLITGSVD------------------------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMS  155 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~  155 (482)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++........       +-..+..
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------~~~~p~g   95 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN-------LFYLPHG   95 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-------TCSSEEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-------ccCCceE
Confidence            4679999999999999888777                        47999999888876443211       2356889


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCe-EeEEee--------cccCCCeEEEEEcc-CCCEEEEEE-CCCeEEEEeCCC
Q psy8448         156 LAYSRDSEMLASGSQSGKVKIWKIATGQ-CLRKLE--------KAHSLGVTCIQFSR-DNSQILTAS-FDTYVRIHGLKS  224 (482)
Q Consensus       156 l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--------~~~~~~v~~i~~~~-~~~~l~~~~-~dg~i~i~d~~~  224 (482)
                      ++++|+++++++...++.|++||..... .+..+.        ..+......++++| ++..+++.+ .++.|++|| .+
T Consensus        96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A           96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            9999999988888888999999975442 444442        12334688999999 777777775 689999999 56


Q ss_pred             CceEEEeecc----------ccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC
Q psy8448         225 GKMLKEFRGH----------SSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT  293 (482)
Q Consensus       225 ~~~~~~~~~~----------~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  293 (482)
                      ++.+..+...          -..+..++++|+ +.++++...++.|++||..+++.+..+... .+...+..++++| + 
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p-g-  251 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP-G-  251 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-T-
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-C-
Confidence            7777666422          234889999998 676777778899999999988888777422 3456678899999 3 


Q ss_pred             CEEEEE-------eCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         294 EHFVVC-------NKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       294 ~~l~~~-------~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ..+.+.       ..+..|++|+. +++.+..+.....+...+..++++|+|..+++...++.|++|++.
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            333333       33458999997 688887775333335678999999999888888889999966553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=1.3e-18  Score=176.81  Aligned_cols=263  Identities=9%  Similarity=0.100  Sum_probs=171.4

Q ss_pred             CCCCceeeccCCccccccccccccccccceeeecCCCC-----cEEEEEEcCCCCEEEEEeCC---------CeEEEEec
Q psy8448          64 LPPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKS-----HVECARFSPDGQYLITGSVD---------GFIEVWNF  129 (482)
Q Consensus        64 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~~~d---------g~v~iwd~  129 (482)
                      .|+|..+...++.+.+|+......     ..++.+|..     ....++|||||++|+.++.+         +.+.+||+
T Consensus        25 ~~dg~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           25 ISDHEYLYKQENNILVFNAEYGNS-----SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             CSSSEEEEEETTEEEEEETTTCCE-----EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCCCcEEEEcCCcEEEEECCCCce-----EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence            455555555466777777654432     233334543     23458899999999998865         56779999


Q ss_pred             CCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCe-------------
Q psy8448         130 TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGV-------------  196 (482)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-------------  196 (482)
                      .+++... +.        .|...+...+|||||+.||.+. ++.|++|++.+++..+....++...+             
T Consensus       100 ~~~~~~~-l~--------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A          100 NKRQLIT-EE--------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             TTTEECC-SS--------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             CCCcEEE-cc--------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            9987543 21        2346799999999999999985 68999999988775543322332222             


Q ss_pred             ----EEEEEccCCCEEEEEECCC------------------------------------eEEEEeCCC---Cc--eEEEe
Q psy8448         197 ----TCIQFSRDNSQILTASFDT------------------------------------YVRIHGLKS---GK--MLKEF  231 (482)
Q Consensus       197 ----~~i~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~  231 (482)
                          ..+.|+|||++|+.++.|.                                    .|++||+.+   ++  ....+
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence                3589999999999875321                                    588899988   73  22333


Q ss_pred             e------ccccceeEEEEcCCCCEEEEEeC----CCcEEEEECCCCc----eeeeeec-cCCCcccee-----EEEEcCC
Q psy8448         232 R------GHSSFVNDITFTADGHSVLSASS----DGTVKMWNLKTTE----CTSTFKS-LGASDIAVN-----SIHLLPK  291 (482)
Q Consensus       232 ~------~~~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~~-~~~~~~~v~-----~i~~~~~  291 (482)
                      .      ++...+..++|+|||+.++....    +..|.+||+.+++    +...... ...+...+.     .+.|+|+
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence            3      37778999999999997665533    3369999999887    3222110 013343333     7889999


Q ss_pred             CCCEEEEEe-CC--CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         292 NTEHFVVCN-KT--NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       292 ~~~~l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      |..+++..+ .+  ..|++||..+.....+..+   ...+..+.. +|++.|+..+.
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g---~~~v~~~~~-~d~~~i~f~~~  382 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKG---TWEVIGIEA-LTSDYLYYISN  382 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEETTCSSCEESCCS---SSCEEEEEE-ECSSEEEEEES
T ss_pred             CCEEEEEEEcCCCceEEEEEECCCCceEecccC---CEEEEEEEE-EeCCEEEEEEe
Confidence            944442554 44  4688888877666666654   445555432 34666665443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.83  E-value=8e-20  Score=171.82  Aligned_cols=226  Identities=10%  Similarity=-0.029  Sum_probs=150.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCC---CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         102 HVECARFSPDGQYLITGSVD---GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      .+.+++|+|||++|+.....   ..|.+||+.+++........        ......+.|+|+|++|+.++.++.|.+||
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~--------~~~~~~~~~spdg~~l~~~~~~~~l~~~d  108 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK--------GDNTFGGFISTDERAFFYVKNELNLMKVD  108 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS--------CBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC--------CCccccceECCCCCEEEEEEcCCcEEEEE
Confidence            36778999999998877543   47889999887754332211        11223378999999999999999999999


Q ss_pred             cCCCeEeEEeecccCCCeEE-------------------EEEccCCCEEEEE-----ECCCeEEEEeCCCCceEEEeecc
Q psy8448         179 IATGQCLRKLEKAHSLGVTC-------------------IQFSRDNSQILTA-----SFDTYVRIHGLKSGKMLKEFRGH  234 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~  234 (482)
                      +.+++..... ..+......                   +.|+|+++.++.+     ..+..|++||+.+++..... .+
T Consensus       109 ~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~  186 (396)
T 3c5m_A          109 LETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QD  186 (396)
T ss_dssp             TTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EE
T ss_pred             CCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cC
Confidence            9888765544 222222222                   3456777666544     35678999999988765544 46


Q ss_pred             ccceeEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC----C
Q psy8448         235 SSFVNDITFTA-DGHSVLSASSD------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT----N  303 (482)
Q Consensus       235 ~~~i~~l~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d----~  303 (482)
                      ...+..+.|+| +++.|+..+.+      ..|.+||+..++......  ......+..+.|+|++..+++++..+    +
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  264 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE--HAEGESCTHEFWIPDGSAMAYVSYFKGQTDR  264 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC--CCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred             CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec--cCCCccccceEECCCCCEEEEEecCCCCccc
Confidence            67789999999 78877776643      368889987665333221  01134678899999994444443332    4


Q ss_pred             eEEEEEcCCcEEEEecCCcccCcCEEEEEEcC-CCCEEEEEe
Q psy8448         304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSP-RGEWIYCVG  344 (482)
Q Consensus       304 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~g~~l~~~~  344 (482)
                      .|++||+.......+....    ... +.|+| ||+++++++
T Consensus       265 ~l~~~d~~~g~~~~l~~~~----~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          265 VIYKANPETLENEEVMVMP----PCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             EEEEECTTTCCEEEEEECC----SEE-EEEECSSSSEEEEEE
T ss_pred             eEEEEECCCCCeEEeeeCC----CCC-CCccCCCCceEEEec
Confidence            4999999533333332211    123 89999 999888765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=9.1e-19  Score=164.17  Aligned_cols=279  Identities=12%  Similarity=0.047  Sum_probs=180.2

Q ss_pred             cCCCCCCceeeccCCc---cccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeec
Q psy8448          61 QGLLPPGTTIDLFRGK---AAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD  137 (482)
Q Consensus        61 ~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~  137 (482)
                      ..+.|+|..+++....   ..+|....   ......++..+|...+..+.|+|||+.|+.++.++.|++||+.+++....
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~---~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~  117 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDL---NTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV  117 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEET---TTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeC---CCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee
Confidence            4566777766665442   12333221   12223344456666666788999999999999999999999999876554


Q ss_pred             cccccccccccccccEEEE--EEcCCCCEEEEEe----------------------CCCcEEEEEcCCCeEeEEeecccC
Q psy8448         138 LKYQAQDNFMLMEEAVMSL--AYSRDSEMLASGS----------------------QSGKVKIWKIATGQCLRKLEKAHS  193 (482)
Q Consensus       138 ~~~~~~~~~~~h~~~i~~l--~~~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~  193 (482)
                      ...+        ...+...  .++|++++++...                      .+..|.+||+.+++.....  .+.
T Consensus       118 ~~~~--------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~  187 (388)
T 3pe7_A          118 YQVP--------AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL--QEN  187 (388)
T ss_dssp             EECC--------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE--EES
T ss_pred             eech--------hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee--cCC
Confidence            4332        2233333  3489999887432                      3468999999988755443  456


Q ss_pred             CCeEEEEEcc-CCCEEEEEECC------CeEEEEeCCCCceEEEeeccc--cceeEEEEcCCCCEEEEEeC-CC----cE
Q psy8448         194 LGVTCIQFSR-DNSQILTASFD------TYVRIHGLKSGKMLKEFRGHS--SFVNDITFTADGHSVLSASS-DG----TV  259 (482)
Q Consensus       194 ~~v~~i~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~-dg----~i  259 (482)
                      ..+..++|+| +|+.|+.+..+      ..|.++|+..++. ..+..+.  ..+..+.|+|||+.|+..+. ++    .|
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (388)
T 3pe7_A          188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI  266 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred             ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence            6789999999 99999887753      3788888866554 3343333  35788999999997765443 22    39


Q ss_pred             EEEECCCCceeeeeeccCCCcc---ceeEEEEcCCCCCEEEEE--------eCCCeEEEEEcCCcEEEEecCCccc----
Q psy8448         260 KMWNLKTTECTSTFKSLGASDI---AVNSIHLLPKNTEHFVVC--------NKTNTVVIMNMQGQIVRSLSSGKRE----  324 (482)
Q Consensus       260 ~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~~--------~~d~~i~i~d~~~~~~~~~~~~~~~----  324 (482)
                      .+||+.+++...... ...+..   ....+.|+|+|..++++.        ..+..|++||+.+..+..+..+...    
T Consensus       267 ~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~  345 (388)
T 3pe7_A          267 YSADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVF  345 (388)
T ss_dssp             EEECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCB
T ss_pred             EEEecCCCceEEEEc-CCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccccc
Confidence            999999987533222 111100   012237899995444443        4567899999976666666544210    


Q ss_pred             ----CcCEEEEEEcCCCCEEEEEe-CCcEEEEEee
Q psy8448         325 ----GGDFLCCTTSPRGEWIYCVG-EDMVLVVRLI  354 (482)
Q Consensus       325 ----~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~~  354 (482)
                          ...+.+++|+|||+.|+..+ .+|...+|.+
T Consensus       346 ~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          346 EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence                01467889999999888665 4677776643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=1.7e-18  Score=175.86  Aligned_cols=240  Identities=11%  Similarity=0.086  Sum_probs=163.7

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---------C
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---------G  172 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---------g  172 (482)
                      ...+++|+|||++++++  ||.|++||+.+++....+..+...   .+......++|||||++|+.++.+         +
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD---EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT---TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh---hhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            45578999999999886  899999999999876554433211   112233458999999999998876         5


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe-eccccce-------------
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF-RGHSSFV-------------  238 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i-------------  238 (482)
                      .+.+||+.+++... + ..+...+..++|+|||+.|+.+. ++.|++||+.+++..+.. .++...+             
T Consensus        93 ~~~~~d~~~~~~~~-l-~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           93 SYDIYDLNKRQLIT-E-ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEEEETTTTEECC-S-SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             EEEEEECCCCcEEE-c-ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            67799999987654 3 45677899999999999999886 789999999888754422 2222222             


Q ss_pred             ----eEEEEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cce--eeee
Q psy8448         239 ----NDITFTADGHSVLSASSDG------------------------------------TVKMWNLKT---TEC--TSTF  273 (482)
Q Consensus       239 ----~~l~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~~--~~~~  273 (482)
                          ..+.|+|||+.|+.++.|.                                    .|.+||+.+   ++.  ...+
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence                3589999999999875321                                    478899988   632  2222


Q ss_pred             ecc---CCCccceeEEEEcCCCCCEEEEEeC----CCeEEEEEc-CCc----E--EEEe-cCCcccCcC-----EEEEEE
Q psy8448         274 KSL---GASDIAVNSIHLLPKNTEHFVVCNK----TNTVVIMNM-QGQ----I--VRSL-SSGKREGGD-----FLCCTT  333 (482)
Q Consensus       274 ~~~---~~~~~~v~~i~~~~~~~~~l~~~~~----d~~i~i~d~-~~~----~--~~~~-~~~~~~~~~-----v~~~~~  333 (482)
                      ...   ..+...+..++|+|++ +.++....    +..|.+||. .++    .  +..+ ...  +...     ....+|
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~--~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS--TTGWVGRFRPSEPHF  326 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC--SSSCSSSSSCCCCEE
T ss_pred             cCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc--CCceEccCcCCCceE
Confidence            210   0267789999999998 55554332    237999998 444    1  1111 011  1222     236789


Q ss_pred             cCCCCEEE-EEe-CCcEEEEE
Q psy8448         334 SPRGEWIY-CVG-EDMVLVVR  352 (482)
Q Consensus       334 ~~~g~~l~-~~~-~dg~i~iw  352 (482)
                      +|||+.|+ ..+ .+|.-.||
T Consensus       327 spDG~~l~~~~s~~~G~~~l~  347 (740)
T 4a5s_A          327 TLDGNSFYKIISNEEGYRHIC  347 (740)
T ss_dssp             CTTSSEEEEEEECTTSCEEEE
T ss_pred             cCCCCEEEEEEEcCCCceEEE
Confidence            99999877 555 45554444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=1e-18  Score=175.72  Aligned_cols=244  Identities=11%  Similarity=0.095  Sum_probs=170.2

Q ss_pred             ecCCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEecCCCceeeccccccccccccccccEE---------EEEEc--CCC
Q psy8448          96 KFGSKSHVECARFSPDGQYLITG--SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM---------SLAYS--RDS  162 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~---------~l~~~--~~~  162 (482)
                      +.+|...|..++|++++-+++..  +.++...||....+.....+...        ...+.         ...|+  |||
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~SPDg   90 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPA--------PWNVRNRVFEYSGFPWAGVPRPAG   90 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCT--------TCCBCCCGGGTCCCCEEEECCSSS
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCC--------CccccccccccCCccceeeeecCC
Confidence            44789999999999887777777  56889999986444333333222        22233         45555  999


Q ss_pred             CE-EEEEeC-CCcEEEEEcC--CCeEeEEeecc----cCCCeEEEEEccCCCEEEEEECC----------CeEEEEeCCC
Q psy8448         163 EM-LASGSQ-SGKVKIWKIA--TGQCLRKLEKA----HSLGVTCIQFSRDNSQILTASFD----------TYVRIHGLKS  224 (482)
Q Consensus       163 ~~-l~~~~~-dg~i~iwd~~--~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~d----------g~i~i~d~~~  224 (482)
                      +. |+.++. +..|.++++.  .......+...    +...+..++|+|||+.|++++.+          ..|++||+.+
T Consensus        91 ~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           91 GPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             SCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             CeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            98 777654 5667777765  20334444221    56678899999999999988876          5899999987


Q ss_pred             ------CceEEEee-ccccceeEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceeeeeeccCCCccceeE
Q psy8448         225 ------GKMLKEFR-GHSSFVNDITFTADGHSVLSASSD--------GTVKMWNLK-TT---ECTSTFKSLGASDIAVNS  285 (482)
Q Consensus       225 ------~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~~~~v~~  285 (482)
                            ++. ..+. .+...+..++|+|||++|+.++.+        ..|.+||+. ++   +......   .+...+..
T Consensus       171 ~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~---~~~~~~~~  246 (662)
T 3azo_A          171 SAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG---GPEEAIAQ  246 (662)
T ss_dssp             TTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE---ETTBCEEE
T ss_pred             CccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC---CCCceEcc
Confidence                  554 4454 556778889999999999887754        379999998 56   3332222   44678899


Q ss_pred             EEEcCCCCCEEEEEeCCC--eEEEEEcCCcEEEEecCCcccC------cCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         286 IHLLPKNTEHFVVCNKTN--TVVIMNMQGQIVRSLSSGKREG------GDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       286 i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~------~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      +.|+|+| ++++++..++  .|.+||..+.....+..+....      ..+..++|+|+++++++++. +.++||.
T Consensus       247 ~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          247 AEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             EEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             eEECCCC-eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence            9999999 4888888888  5666666444444444332111      01457899999999999998 9999773

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=1.5e-17  Score=167.35  Aligned_cols=234  Identities=12%  Similarity=0.047  Sum_probs=159.4

Q ss_pred             EEEEc--CCCCE-EEEEeC-CCeEEEEecC--C-CceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC------
Q psy8448         105 CARFS--PDGQY-LITGSV-DGFIEVWNFT--T-GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS------  171 (482)
Q Consensus       105 ~~~~s--~~~~~-l~s~~~-dg~v~iwd~~--~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d------  171 (482)
                      ...|+  |||+. |+.++. +..|.++++.  . ++. ..+....   ...|...+..++|+|||+.|++++.+      
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~  156 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVS---AVGGGLRWADPVLLPERGEVWCMAEEFTGEGP  156 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCC---CSTTCEEEEEEEEETTTTEEEEEEEEECSSST
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCc---cCCCCccccCcEECCCCCEEEEEEecccCCCC
Confidence            56565  99998 776653 5667777765  2 332 2222110   00134678899999999999998876      


Q ss_pred             ----CcEEEEEcCC------CeEeEEeec-ccCCCeEEEEEccCCCEEEEEECC--------CeEEEEeCC-CC---ceE
Q psy8448         172 ----GKVKIWKIAT------GQCLRKLEK-AHSLGVTCIQFSRDNSQILTASFD--------TYVRIHGLK-SG---KML  228 (482)
Q Consensus       172 ----g~i~iwd~~~------~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~  228 (482)
                          ..|++||+.+      ++ ...+ . .+...+..++|+|||++|+.++.+        ..|++||+. ++   +..
T Consensus       157 ~~~~~~i~~~~~~~~~~~~~~~-~~~l-~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          157 SDVRRFLAAVPLDGSAAADRSA-VREL-SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             TCEEEEEEEEETTSTTTTCGGG-SEES-SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             CCceeEEEEEECCCCccccCCc-eeEE-EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence                5899999987      44 3444 3 445677889999999999987754        379999998 56   444


Q ss_pred             EEeeccccceeEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeeeeccCCCccc--------eeEEEEcCCCCCEEEE
Q psy8448         229 KEFRGHSSFVNDITFTADGHSVLSASSDG--TVKMWNLKTTECTSTFKSLGASDIA--------VNSIHLLPKNTEHFVV  298 (482)
Q Consensus       229 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~--------v~~i~~~~~~~~~l~~  298 (482)
                      ....++...+..+.|+|||+++++++.++  .|.+||+.+++......   .+...        +..++|+|++ .++++
T Consensus       235 ~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w~~~~~~~~~~~~~-~~~~~  310 (662)
T 3azo_A          235 TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLWTPGMRWFAPLANG-LIAVV  310 (662)
T ss_dssp             EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCCSTTCCSEEECTTS-CEEEE
T ss_pred             EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc---ccccccCccccccCceEeEeCCC-EEEEE
Confidence            44445578899999999999777887788  56667766666543332   11111        4678888887 78888


Q ss_pred             EeCCCeEEEE--EcCCcEEEEecCCcccCcCEEEE-EEcCCCCEEEEEeCCcEEEEE
Q psy8448         299 CNKTNTVVIM--NMQGQIVRSLSSGKREGGDFLCC-TTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       299 ~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      ++. +.+++|  |..+..+..+..+   ...+..+ +++.+.-.+++++.+....+|
T Consensus       311 ~~~-~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          311 HGK-GAAVLGILDPESGELVDAAGP---WTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             EBS-SSCEEEEEETTTTEEEECCSS---CCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             EEc-CccEEEEEECCCCcEEEecCC---CCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            888 999998  5555667776554   4456666 554443344456667666766

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=1.7e-17  Score=151.46  Aligned_cols=183  Identities=11%  Similarity=0.120  Sum_probs=140.8

Q ss_pred             ccEEEEEEcCCCCEEEEEeCC------------------------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC
Q psy8448         151 EAVMSLAYSRDSEMLASGSQS------------------------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS  206 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~  206 (482)
                      ..+.+++++|+|+++++...+                        +.|.+||..+++....+...+-.....++++|+|.
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            579999999999988887766                        47999999889887766444556789999999999


Q ss_pred             EEEEEECCCeEEEEeCCCCc-eEEEe---------eccccceeEEEEcC-CCCEEEEEe-CCCcEEEEECCCCceeeeee
Q psy8448         207 QILTASFDTYVRIHGLKSGK-MLKEF---------RGHSSFVNDITFTA-DGHSVLSAS-SDGTVKMWNLKTTECTSTFK  274 (482)
Q Consensus       207 ~l~~~~~dg~i~i~d~~~~~-~~~~~---------~~~~~~i~~l~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  274 (482)
                      ++++...++.|++||..... .+..+         ..+...+..++++| ++.++++.+ .++.|++|| .+++.+..+.
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~  182 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG  182 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence            88888888999999985442 44544         23444688999999 788777776 689999999 5566666653


Q ss_pred             ccC-------CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcC
Q psy8448         275 SLG-------ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       275 ~~~-------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~  335 (482)
                      ...       .+-.....++++|++..++++...++.|++|+.. ++.+..+.... ....+..++++|
T Consensus       183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~p  250 (329)
T 3fvz_A          183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS-FGRNVFAISYIP  250 (329)
T ss_dssp             EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-TTTCEEEEEEET
T ss_pred             cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-cCCCcceeeecC
Confidence            211       1223478999999854788888889999999996 88888875432 245678999999

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=1.2e-16  Score=143.00  Aligned_cols=197  Identities=13%  Similarity=0.195  Sum_probs=147.6

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec-----ccCCCeEEEEEc-cCCCEEEEEEC-CCeEEEEeC
Q psy8448         150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK-----AHSLGVTCIQFS-RDNSQILTASF-DTYVRIHGL  222 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~i~~~-~~~~~l~~~~~-dg~i~i~d~  222 (482)
                      -..+.+++++++++++++...++.|.+||.. ++....+..     .+...+..+++. +++..+++... ++.|.+|| 
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-  106 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-  106 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence            4578999999999988888889999999976 655555521     233568899994 56655555433 78999999 


Q ss_pred             CCCceEEEeec-cccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         223 KSGKMLKEFRG-HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       223 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      .+++.+..+.. +...+.+++++|+++++++...++.|.+||.. ++....+... .+...+..++++|++ .++++...
T Consensus       107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-~~~~~p~~i~~~~~g-~l~v~~~~  183 (286)
T 1q7f_A          107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS-KHLEFPNGVVVNDKQ-EIFISDNR  183 (286)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT-TTCSSEEEEEECSSS-EEEEEEGG
T ss_pred             CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC-CccCCcEEEEECCCC-CEEEEECC
Confidence            56777666642 34568999999999977777778999999964 5555554321 233467899999998 67777778


Q ss_pred             CCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc-EEEEE
Q psy8448         302 TNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM-VLVVR  352 (482)
Q Consensus       302 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg-~i~iw  352 (482)
                      ++.|++||.+++.+..+... .....+..++++++|+++++...++ .|.+|
T Consensus       184 ~~~i~~~~~~g~~~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~  234 (286)
T 1q7f_A          184 AHCVKVFNYEGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIF  234 (286)
T ss_dssp             GTEEEEEETTCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEccC-CccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence            99999999988877777542 1135678999999999888888776 99944

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=6.5e-17  Score=149.05  Aligned_cols=217  Identities=12%  Similarity=0.124  Sum_probs=150.2

Q ss_pred             CcEEEEEEcCCCCEEEEEe---------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448         101 SHVECARFSPDGQYLITGS---------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      ..+..+++  ||+.++...         .++.|.+||+.+++....             ..+..++|+|+|++|+.++.+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------------~~~~~~~~SpDg~~la~~~~~   79 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------------ENATMPRISPDGKKIAFMRAN   79 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------------ESCEEEEECTTSSEEEEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------------ccCCCeEECCCCCEEEEEEec
Confidence            45777788  888887642         256899999988764321             247889999999999988754


Q ss_pred             ---C--cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC---------------------------CeEEE
Q psy8448         172 ---G--KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD---------------------------TYVRI  219 (482)
Q Consensus       172 ---g--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---------------------------g~i~i  219 (482)
                         +  .|.+||+.+++......  +.. +..++|+|+|+.|+.++.+                           ..|++
T Consensus        80 ~~~~~~~l~~~~~~~g~~~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  156 (347)
T 2gop_A           80 EEKKVSEIWVADLETLSSKKILE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWI  156 (347)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEE--ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEE
T ss_pred             cCCCcceEEEEECCCCceEEEEc--CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEE
Confidence               2  48888888877655442  233 9999999999998887632                           57999


Q ss_pred             EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeeeeeccCCCccceeEEEEcCCC
Q psy8448         220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG-------TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN  292 (482)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  292 (482)
                      ||+.+++.+..+.. . .+..+.|+|+| +++++..++       ...+|.+.+++. ..+.   .+ ..+..+  +|+|
T Consensus       157 ~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~---~~-~~~~~~--spdg  226 (347)
T 2gop_A          157 FDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMF---EK-VSFYAV--DSDG  226 (347)
T ss_dssp             EETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEE---EE-ESEEEE--EECS
T ss_pred             EECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEec---cC-cceeeE--CCCC
Confidence            99998877455554 3 78899999999 777776542       344554444443 3333   22 344444  8999


Q ss_pred             CCEEEEEeCC--------CeEEEEEcCCcEEEEecCCcccCcCEEE-EEEcCCCCEEEEEeCCcEEEEE
Q psy8448         293 TEHFVVCNKT--------NTVVIMNMQGQIVRSLSSGKREGGDFLC-CTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       293 ~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                       +.++.++.+        ..|.+|| .++. ..+...  +...+.. +.|+ ++ ++++++.++.+++|
T Consensus       227 -~~l~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~  288 (347)
T 2gop_A          227 -ERILLYGKPEKKYMSEHNKLYIYD-GKEV-MGILDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY  288 (347)
T ss_dssp             -SCEEEEECCSSSCCCSSCEEEEEC-SSCE-EESSTT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred             -CEEEEEEccccCCccccceEEEEC-CCce-Eecccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence             455544432        4688888 5543 334332  2456775 8999 88 88899999999955

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=2.1e-17  Score=152.52  Aligned_cols=221  Identities=12%  Similarity=0.140  Sum_probs=146.2

Q ss_pred             CCCEEEEEe------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----------CCcE
Q psy8448         111 DGQYLITGS------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----------SGKV  174 (482)
Q Consensus       111 ~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----------dg~i  174 (482)
                      +++++++..      .|+.|.+||..+++....+...        ..+  .++|+|++++++++..          ++.|
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g--------~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v   83 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA--------FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV   83 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC--------EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC--------CCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence            455555543      3679999999999877655433        233  8999999999999863          5679


Q ss_pred             EEEEcCCCeEeEEeecc-----cCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEE-eeccccceeEEEEcCC
Q psy8448         175 KIWKIATGQCLRKLEKA-----HSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTAD  246 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~  246 (482)
                      .+||..+.+.+..+...     +......++++|+|++|+++..  ++.|.+||+.+++.+.. +.. .+ ...+.+.|+
T Consensus        84 ~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~  161 (361)
T 2oiz_A           84 EVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPN  161 (361)
T ss_dssp             EEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTT
T ss_pred             EEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCC
Confidence            99999998888777422     2345678999999999998874  57999999999988877 542 22 233566776


Q ss_pred             C-CEEEEEeCCCcEEEEECCC-Cceeeeee---ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---EEEEe
Q psy8448         247 G-HSVLSASSDGTVKMWNLKT-TECTSTFK---SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ---IVRSL  318 (482)
Q Consensus       247 ~-~~l~~~~~dg~i~i~d~~~-~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~  318 (482)
                      + ..+++.+.||.+.+|++.. ++......   .......++ .+.+.+++ ..++..+.++.+.++|+...   ....+
T Consensus       162 ~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~  239 (361)
T 2oiz_A          162 RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPW  239 (361)
T ss_dssp             SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred             CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccc
Confidence            5 6788889999999999865 44431211   111122222 23345666 56666678899999998432   12222


Q ss_pred             cCCc---cc----CcCEEEEEEcCCCCEEEEEeC
Q psy8448         319 SSGK---RE----GGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       319 ~~~~---~~----~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      ....   ..    ......++++|+++.++++..
T Consensus       240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~  273 (361)
T 2oiz_A          240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH  273 (361)
T ss_dssp             ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred             cccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence            1110   00    011113689999988887653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=3.6e-17  Score=149.85  Aligned_cols=235  Identities=10%  Similarity=0.084  Sum_probs=164.6

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA  180 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~  180 (482)
                      ..|.++.|++++..++..+.++.++.|.   ++....+..        +...+.+++|+|++++++++..++.|.+||..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~   74 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISK--------KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE   74 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEES--------SCCCEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred             cccceeeecCCccceeEEeecccCcccc---cceeEEEec--------cCccccCcEECCCCCEEEEECCCCEEEEEeCC
Confidence            4577788999888777777788888882   222222221        23567899999999977788889999999998


Q ss_pred             CCeEeEEeecccCCCeEEEEEccCCCEEEEEECC----CeEEEEeCCCCceEEEee--ccccceeEEEEcCCCCEEEEEe
Q psy8448         181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD----TYVRIHGLKSGKMLKEFR--GHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      +++..... ..+...+.+++++|+++++++...+    +.|.+||.++++....+.  .+...+.+++++|+++++++..
T Consensus        75 ~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  153 (333)
T 2dg1_A           75 TKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDF  153 (333)
T ss_dssp             TCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEEC
T ss_pred             CCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEec
Confidence            87765443 3456789999999999877776665    689999998876543332  2445789999999998777655


Q ss_pred             C------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEec-----CC
Q psy8448         255 S------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLS-----SG  321 (482)
Q Consensus       255 ~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~-----~~  321 (482)
                      .      .+.|..+|..+++.....    .....+..++|+|++..++++.+.++.|.+|+.  .+..+..+.     ..
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~  229 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPII----QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF  229 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEEE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC
T ss_pred             cccccCCCceEEEEeCCCCEEEEee----cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEec
Confidence            3      355667776655443322    223346889999998435566667889999999  344332211     11


Q ss_pred             cccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         322 KREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       322 ~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      .. ...+..++++++|+++++...++.|.+|
T Consensus       230 ~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~  259 (333)
T 2dg1_A          230 TG-HEGPDSCCIDSDDNLYVAMYGQGRVLVF  259 (333)
T ss_dssp             CS-SSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CC-CCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            10 1356789999999988888788999944

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=3.3e-16  Score=140.82  Aligned_cols=231  Identities=10%  Similarity=0.080  Sum_probs=170.0

Q ss_pred             CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          98 GSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .+.....+++|+|+|+ +++++..++.|..|+..++  ...+..        +...+.+++++|+++++++...++.|.+
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~--------~~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH--------PSHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES--------SCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC--------CCCCcceeeECCCCcEEEEecCCCeEEE
Confidence            4566788999999998 7788888999999998876  333322        2457899999999998777767789999


Q ss_pred             EEcCCCeEeEEeec---ccCCCeEEEEEccCCCEEEEE----E-------------CCCeEEEEeCCCCceEEEeecccc
Q psy8448         177 WKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTA----S-------------FDTYVRIHGLKSGKMLKEFRGHSS  236 (482)
Q Consensus       177 wd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~~  236 (482)
                      ||..+++.......   .....+..++++|+|.++++.    +             ..+.|..++.. ++ +..+..+..
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~  172 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRV  172 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCS
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCC
Confidence            99978775443311   112346789999999887763    2             13467777765 44 344455666


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEECC-CCce---eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q psy8448         237 FVNDITFTADGHSVLSASSDGTVKMWNLK-TTEC---TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG  312 (482)
Q Consensus       237 ~i~~l~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~  312 (482)
                      .+..++|+|+++.+++.+.++.|.+||+. +++.   ...+   ......+..+++.++| .++++.  ++.|.+|+.++
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g  246 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDG  246 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTS
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCCC
Confidence            78899999999988777778899999997 4544   2233   1344556789999998 665555  88999999998


Q ss_pred             cEEEEecCCcccCcCEEEEEE-cCCCCEEEEEeCCcEEE
Q psy8448         313 QIVRSLSSGKREGGDFLCCTT-SPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       313 ~~~~~~~~~~~~~~~v~~~~~-~~~g~~l~~~~~dg~i~  350 (482)
                      +.+..+..+   .. +.+++| .|+++.|++++.++..+
T Consensus       247 ~~~~~~~~~---~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          247 DELGRVLTP---QT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             CEEEEEECS---SC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             CEEEEEECC---CC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence            888877654   33 788999 68999999988875433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=2e-16  Score=160.05  Aligned_cols=292  Identities=10%  Similarity=0.062  Sum_probs=193.6

Q ss_pred             HHHHHHhHhhhhhccCCCCCCceeeccCCc-----ccccccccccc-ccccc--eeeecCCCCcEEEEEEcCCCCEEEEE
Q psy8448          47 LLALLGQALKWQQHQGLLPPGTTIDLFRGK-----AAMKDQEEEKY-PTQLS--KQIKFGSKSHVECARFSPDGQYLITG  118 (482)
Q Consensus        47 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~-~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~  118 (482)
                      +...+...++........|+|..+.+....     ..+|......- +..+.  ..+..+|...+..++|||||++||.+
T Consensus        63 l~~~~~~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~  142 (710)
T 2xdw_A           63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYG  142 (710)
T ss_dssp             HHHHHHHHHCSCEECCCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEE
T ss_pred             HHHHHHHhhccccCCCCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEE
Confidence            333333444444444555788876665322     13333321111 11110  12233565678999999999999877


Q ss_pred             eCCC-----eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc----------------EEEE
Q psy8448         119 SVDG-----FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK----------------VKIW  177 (482)
Q Consensus       119 ~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~----------------i~iw  177 (482)
                      ..++     .|++||+.+++...... .        ...+..++|+|||+.|+.++.++.                |++|
T Consensus       143 ~~~~G~~~~~i~v~d~~tg~~~~~~~-~--------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~  213 (710)
T 2xdw_A          143 LSASGSDWVTIKFMKVDGAKELPDVL-E--------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH  213 (710)
T ss_dssp             EEETTCSCEEEEEEETTTTEEEEEEE-E--------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred             EcCCCCceEEEEEEECCCCCCCcccc-c--------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence            6433     89999999988654321 1        123667999999999999988766                9999


Q ss_pred             EcCCCeEe--EEee-cccCCCeEEEEEccCCCEEEEEEC-----CCeEEEEeCCC------Cc-eEEEeeccccceeEEE
Q psy8448         178 KIATGQCL--RKLE-KAHSLGVTCIQFSRDNSQILTASF-----DTYVRIHGLKS------GK-MLKEFRGHSSFVNDIT  242 (482)
Q Consensus       178 d~~~~~~~--~~~~-~~~~~~v~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~i~~l~  242 (482)
                      ++.+++..  ..+. ..+...+..+.|+|+|++|+.++.     +..|++||+.+      ++ ....+..+...+.. .
T Consensus       214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~  292 (710)
T 2xdw_A          214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-Y  292 (710)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-E
T ss_pred             ECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-E
Confidence            99877532  2221 224455789999999999987764     56899999976      43 35566666665554 5


Q ss_pred             EcCCCCEEEEEeCC----CcEEEEECCCCce--eeeeeccCCCc--cceeEEEEcCCCCCEEEEEeCCCe--EEEEEc-C
Q psy8448         243 FTADGHSVLSASSD----GTVKMWNLKTTEC--TSTFKSLGASD--IAVNSIHLLPKNTEHFVVCNKTNT--VVIMNM-Q  311 (482)
Q Consensus       243 ~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~~~d~~--i~i~d~-~  311 (482)
                      |+|+|+.|+..+..    +.|.+||+.++..  ...+.   .+.  ..+..+.|++++ .++++...++.  |.+|++ +
T Consensus       293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~  368 (710)
T 2xdw_A          293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV---PEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLAT  368 (710)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTT
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc---CCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCC
Confidence            88899988877653    3599999987642  23332   222  367889998655 78888888874  566777 6


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe----CCcEEEEEeeh
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG----EDMVLVVRLIQ  355 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~----~dg~i~iw~~~  355 (482)
                      ++.+..+..+   ...+..++++|+++.++...    ..+.++.|++.
T Consensus       369 g~~~~~l~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          369 GALLKIFPLE---VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             CCEEEEECCC---SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             CCEEEecCCC---CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence            7777776654   56788899999998776442    34789988875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=9.2e-17  Score=161.97  Aligned_cols=293  Identities=10%  Similarity=-0.012  Sum_probs=189.8

Q ss_pred             hHHHHHHHhHhhhhhccCCCCCCceeeccCCc-----ccccccccccc-ccccce--eeecCCCCcEEEEEEcCCCCEEE
Q psy8448          45 SRLLALLGQALKWQQHQGLLPPGTTIDLFRGK-----AAMKDQEEEKY-PTQLSK--QIKFGSKSHVECARFSPDGQYLI  116 (482)
Q Consensus        45 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~-~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~  116 (482)
                      .++...+...++........++|..+.+....     ..+|......- +..+..  .+..+|...+.+++|||||++||
T Consensus        57 ~~l~~~~~~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la  136 (695)
T 2bkl_A           57 EALAARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVA  136 (695)
T ss_dssp             HHHHHHHHHHHSCCEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEE
T ss_pred             HHHHHHHHHhhccccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEE
Confidence            45655555666666666666888877665432     33454332111 111110  12235666899999999999998


Q ss_pred             E-----EeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc-------------EEEEE
Q psy8448         117 T-----GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK-------------VKIWK  178 (482)
Q Consensus       117 s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~-------------i~iwd  178 (482)
                      .     |+.+..|++||+.+++........        ......++|+|||+.|+.++.|..             |++|+
T Consensus       137 ~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--------~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~  208 (695)
T 2bkl_A          137 FAQKPNAADEAVLHVIDVDSGEWSKVDVIE--------GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHT  208 (695)
T ss_dssp             EEEEETTCSCCEEEEEETTTCCBCSSCCBS--------CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEE
T ss_pred             EEECCCCCceEEEEEEECCCCCCcCCcccC--------cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEE
Confidence            4     344578999999998864111111        011267899999999999998776             99999


Q ss_pred             cCCCeE--eEEee-cccCCCeEEEEEccCCCEEEEEECCC----eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448         179 IATGQC--LRKLE-KAHSLGVTCIQFSRDNSQILTASFDT----YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       179 ~~~~~~--~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      +.++..  ...+. ..+...+..+.|+|+|++|+.++.++    .|++++..+++ ...+..+...+....+ +++. ++
T Consensus       209 l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~  285 (695)
T 2bkl_A          209 LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FY  285 (695)
T ss_dssp             TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EE
T ss_pred             CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EE
Confidence            987762  22221 23445788999999999998877666    78888765554 3444445555666666 5666 55


Q ss_pred             EEeC----CCcEEEEECCCCce--eeeeeccCCC-ccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCc
Q psy8448         252 SASS----DGTVKMWNLKTTEC--TSTFKSLGAS-DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGK  322 (482)
Q Consensus       252 ~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~  322 (482)
                      ..+.    ++.|.+||+.+++.  ...+..  .+ ...+..++++ ++ .++++...++..++|.+  .++....+....
T Consensus       286 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~  361 (695)
T 2bkl_A          286 VLTDEGAPRQRVFEVDPAKPARASWKEIVP--EDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQLPG  361 (695)
T ss_dssp             EEECTTCTTCEEEEEBTTBCSGGGCEEEEC--CCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCCSS
T ss_pred             EEECCCCCCCEEEEEeCCCCCccCCeEEec--CCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecCCC
Confidence            4443    57899999987653  122221  22 4567888887 34 78888888998887765  566666654321


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEe----CCcEEEEEee
Q psy8448         323 REGGDFLCCTTSPRGEWIYCVG----EDMVLVVRLI  354 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g~~l~~~~----~dg~i~iw~~  354 (482)
                        ...+..++++|+++.++...    ..+.+++|++
T Consensus       362 --~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          362 --VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             --SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             --CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence              45567788999998777433    3467885544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=1.3e-16  Score=147.16  Aligned_cols=258  Identities=14%  Similarity=0.136  Sum_probs=171.9

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQ  143 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~  143 (482)
                      ++.+.+++.....    ....+. .+..+  .++|+|||++|++++          .++.|.+||+.+++....+.....
T Consensus        30 d~~v~v~D~~t~~----~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~  102 (361)
T 2oiz_A           30 ESRVHVYDYTNGK----FLGMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK  102 (361)
T ss_dssp             GCEEEEEETTTCC----EEEEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred             cCeEEEEECCCCe----EEEEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc
Confidence            3455566543322    223333 33444  899999999999886          257899999999888776654321


Q ss_pred             cccccccccEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCeEeEE-eecccCCCeEEEEEccCC-CEEEEEECCCeEEE
Q psy8448         144 DNFMLMEEAVMSLAYSRDSEMLASGSQ--SGKVKIWKIATGQCLRK-LEKAHSLGVTCIQFSRDN-SQILTASFDTYVRI  219 (482)
Q Consensus       144 ~~~~~h~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i  219 (482)
                      .  ..+......++++|+|++|+++..  ++.|.+||+.+++.+.. +.  .. ....+.+.|++ ..+++.+.||.+.+
T Consensus       103 ~--~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~-~~~~v~~~p~~~~~~~~~~~dg~~~~  177 (361)
T 2oiz_A          103 R--VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AA-GCWSVIPQPNRPRSFMTICGDGGLLT  177 (361)
T ss_dssp             B--CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GT-TEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred             c--cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CC-CcceeEEcCCCCeeEEEECCCCcEEE
Confidence            0  001234667899999999998874  57999999999988877 52  22 23335677765 67788889999999


Q ss_pred             EeCCC-CceEEE------eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eeeeeccC-----C--Cccce
Q psy8448         220 HGLKS-GKMLKE------FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC--TSTFKSLG-----A--SDIAV  283 (482)
Q Consensus       220 ~d~~~-~~~~~~------~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~-----~--~~~~v  283 (482)
                      +++.. ++....      +.....+ ..+.+.+++..++..+.++.|.++|+.....  ...+....     .  .....
T Consensus       178 v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~  256 (361)
T 2oiz_A          178 INLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY  256 (361)
T ss_dssp             EEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred             EEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence            99865 554421      1222222 2334467777888888899999999976542  12221100     0  01112


Q ss_pred             eEEEEcCCCCCEEEEEe----------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         284 NSIHLLPKNTEHFVVCN----------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       284 ~~i~~~~~~~~~l~~~~----------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ..++++|++..++++..          ..+.|.+||. +++.+..+..+   .  +..++|+|||++|++++. +.|.
T Consensus       257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~  328 (361)
T 2oiz_A          257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVN  328 (361)
T ss_dssp             SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEE
T ss_pred             eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEE
Confidence            23789999855555544          1358999999 67888887764   2  789999999999998887 9999

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=2.1e-17  Score=155.19  Aligned_cols=239  Identities=9%  Similarity=-0.025  Sum_probs=156.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEE-------------EEEEcCCCCEEEEE-
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVM-------------SLAYSRDSEMLASG-  168 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~-------------~l~~~~~~~~l~~~-  168 (482)
                      ...+.|+|||++|+.++.++.|++||+.+++.......+..  .......+.             .+.|+|+++.++.+ 
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~  160 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE  160 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeee
Confidence            33478999999999999999999999998875443332210  000000000             03567888877654 


Q ss_pred             ----eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECC------CeEEEEeCCCCceEEEeecc-cc
Q psy8448         169 ----SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFD------TYVRIHGLKSGKMLKEFRGH-SS  236 (482)
Q Consensus       169 ----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~  236 (482)
                          ..+..|.+||+.+++.....  .+...+..+.|+| +++.|+..+.+      ..|.+||+..++........ ..
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~  238 (396)
T 3c5m_A          161 FYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGE  238 (396)
T ss_dssp             HHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTE
T ss_pred             eccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCc
Confidence                35678999999888765544  4667789999999 78877776643      36889998766543322211 23


Q ss_pred             ceeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcC-CCCCEEEEEe----------
Q psy8448         237 FVNDITFTADGHSVLSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP-KNTEHFVVCN----------  300 (482)
Q Consensus       237 ~i~~l~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~----------  300 (482)
                      .+..++|+|+|+.|+.++.+     +.|.+||+.+++......   . . ... +.|+| ++ .+++.++          
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~-~-~~~-~~~s~~dg-~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---M-P-PCS-HLMSNFDG-SLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---C-C-SEE-EEEECSSS-SEEEEEECCC-------
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---C-C-CCC-CCccCCCC-ceEEEecCCcceeeccc
Confidence            57889999999988776543     449999999887544322   1 1 122 88999 88 5666654          


Q ss_pred             ------CCCeEEEEEcCCcEEEEecCCccc--------CcCEEEEEEcCCCCEEEEEeC-CcEEEEE
Q psy8448         301 ------KTNTVVIMNMQGQIVRSLSSGKRE--------GGDFLCCTTSPRGEWIYCVGE-DMVLVVR  352 (482)
Q Consensus       301 ------~d~~i~i~d~~~~~~~~~~~~~~~--------~~~v~~~~~~~~g~~l~~~~~-dg~i~iw  352 (482)
                            .+..|++||+.+.....+..+...        ...+..++|+|||+.|+..+. ++...+|
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~  378 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY  378 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence                  347899999954333344332110        002456789999999887664 5666655

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.76  E-value=1.8e-14  Score=129.57  Aligned_cols=238  Identities=14%  Similarity=0.094  Sum_probs=170.2

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      .+...+.+++++++|+++++...++.|.+||.. ++... +....      +...+.++++.+++..+++...++.|..|
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~   83 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPT------PDAKVMCLTISSDGEVWFTENAANKIGRI   83 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSS------TTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCc------ccCceeeEEECCCCCEEEeCCCCCeEEEE
Confidence            445689999999999988877668899999987 55332 21111      13578999999999877777668899999


Q ss_pred             EcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE-eeccccceeEEEEcCCCCEEEEEeC
Q psy8448         178 KIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTADGHSVLSASS  255 (482)
Q Consensus       178 d~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~  255 (482)
                      |.. ++. ..+. ......+..+++.+++..+++...++.|..||. +++.... .......+.+++++++++.+++...
T Consensus        84 ~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  160 (299)
T 2z2n_A           84 TKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ  160 (299)
T ss_dssp             CTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             CCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence            976 433 2221 224557899999999987777767889999998 5554332 2234556899999999987777767


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcC
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  335 (482)
                      ++.|..||. +++... +.. ......+..+++.+++ .++++...++.|..||.++... .+... .....+.++++++
T Consensus       161 ~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~-~~~~~-~~~~~~~~i~~~~  234 (299)
T 2z2n_A          161 NNAIGRITE-SGDITE-FKI-PTPASGPVGITKGNDD-ALWFVEIIGNKIGRITTSGEIT-EFKIP-TPNARPHAITAGA  234 (299)
T ss_dssp             TTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEE-EEECS-STTCCEEEEEECS
T ss_pred             CCEEEEEcC-CCcEEE-eeC-CCCCCcceeEEECCCC-CEEEEccCCceEEEECCCCcEE-EEECC-CCCCCceeEEECC
Confidence            789999998 665443 211 1334567899999987 6777766788999999965533 33221 1246788999999


Q ss_pred             CCCEEEEEeCCcEEEEE
Q psy8448         336 RGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       336 ~g~~l~~~~~dg~i~iw  352 (482)
                      +|+..++...++.|..|
T Consensus       235 ~g~l~v~~~~~~~i~~~  251 (299)
T 2z2n_A          235 GIDLWFTEWGANKIGRL  251 (299)
T ss_dssp             TTCEEEEETTTTEEEEE
T ss_pred             CCCEEEeccCCceEEEE
Confidence            99876666577888844

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.76  E-value=3.3e-15  Score=136.73  Aligned_cols=239  Identities=12%  Similarity=0.090  Sum_probs=170.2

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC----Cc
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS----GK  173 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d----g~  173 (482)
                      ++...+.+++|+|+|++++++..++.|.+||..+++.......        +...+.+++++|+++++++...+    +.
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS--------HKANPAAIKIHKDGRLFVCYLGDFKSTGG  113 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC--------SSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC--------CCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence            5666789999999999888888899999999988775432211        24679999999999877777666    68


Q ss_pred             EEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEEC------CCeEEEEeCCCCceEEEeeccccceeEEEEcCC
Q psy8448         174 VKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASF------DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD  246 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~  246 (482)
                      |.+||..++.....+. ......+..++++|+|..+++...      .+.|..+|..+++... +......+..++|+|+
T Consensus       114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~d  192 (333)
T 2dg1_A          114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTD  192 (333)
T ss_dssp             EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTT
T ss_pred             EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCC
Confidence            9999988776543332 123457899999999987766553      3567778776555433 3233445789999999


Q ss_pred             CCEEEEE-eCCCcEEEEECCC-Cceeeee-----eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEec
Q psy8448         247 GHSVLSA-SSDGTVKMWNLKT-TECTSTF-----KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLS  319 (482)
Q Consensus       247 ~~~l~~~-~~dg~i~i~d~~~-~~~~~~~-----~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  319 (482)
                      ++.|+.+ +.++.|.+||+++ +.....+     .....+ ..+..+++++++ .++++...++.|.+||.+++.+..+.
T Consensus       193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~~~~  270 (333)
T 2dg1_A          193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQIL  270 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEEEEE
Confidence            9866554 4578999999964 3322211     111111 367789999998 77777778899999999887777765


Q ss_pred             CCcc---cCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         320 SGKR---EGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       320 ~~~~---~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      ....   +...+.+++|+||++.|++++.++
T Consensus       271 ~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          271 IPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             cCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            4321   111578899999988887666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=1e-15  Score=135.55  Aligned_cols=238  Identities=8%  Similarity=-0.060  Sum_probs=169.1

Q ss_pred             cEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448         102 HVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA  180 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~  180 (482)
                      ...+++++++|++++ +...++.|.+|+..++...... ..       +...+.++++.++++.+++.. ++.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~-------~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FN-------GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-CC-------SCCSCCCEEECTTCCEEEEET-TTEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-eC-------CcCCcceeEECCCCCEEEEcC-CCEEEEEeCC
Confidence            678999999999777 5467889999997655432211 11       124578899999998665555 8899999976


Q ss_pred             CCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEE
Q psy8448         181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVK  260 (482)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~  260 (482)
                      .... ..+.......+..+++++++..+++...++.|.+|+..+.............+.+++++++++.+++...++.|.
T Consensus        96 ~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~  174 (270)
T 1rwi_B           96 SNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVV  174 (270)
T ss_dssp             CSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred             CceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence            5543 333223335689999999998777767788999998765544332223334678999999999777766788999


Q ss_pred             EEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEE
Q psy8448         261 MWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWI  340 (482)
Q Consensus       261 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l  340 (482)
                      +||...........   .....+..+++.+++ .++++...++.|.+|+..+.........  +...+.+++++++|+.+
T Consensus       175 ~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~--~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          175 KLEAESNNQVVLPF---TDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFT--GLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             EECTTTCCEEECCC---SSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCC--SCSCEEEEEECTTCCEE
T ss_pred             EEecCCCceEeecc---cCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccC--CCCCceeEEECCCCCEE
Confidence            99988765433221   223567899999998 7888877889999999976544443321  13568899999999988


Q ss_pred             EEEeCCcEEEEEeeh
Q psy8448         341 YCVGEDMVLVVRLIQ  355 (482)
Q Consensus       341 ~~~~~dg~i~iw~~~  355 (482)
                      ++...++.|+++++.
T Consensus       249 v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          249 VADRGNDRVVKLTSL  263 (270)
T ss_dssp             EEEGGGTEEEEECCC
T ss_pred             EEECCCCEEEEEcCC
Confidence            888899999976654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=7.5e-16  Score=155.81  Aligned_cols=234  Identities=12%  Similarity=0.099  Sum_probs=154.1

Q ss_pred             CCCCEEEEEeCC-----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEEc
Q psy8448         110 PDGQYLITGSVD-----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG-----KVKIWKI  179 (482)
Q Consensus       110 ~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg-----~i~iwd~  179 (482)
                      |+|++++....+     +.+.+.+...++....+...  ....+|...+..++|||||++|+.+..++     .|++||+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~--~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~  158 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPN--ILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV  158 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGG--GGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHH--HhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence            788887755422     23455554444332211111  11122344688999999999999876543     8999999


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCe----------------EEEEeCCCCceE--EEee--cccccee
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTY----------------VRIHGLKSGKML--KEFR--GHSSFVN  239 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~--~~~~--~~~~~i~  239 (482)
                      .+++......  ....+..++|+|||+.|+.++.++.                |++|++.+++..  ..+.  .+...+.
T Consensus       159 ~tg~~~~~~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~  236 (710)
T 2xdw_A          159 DGAKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG  236 (710)
T ss_dssp             TTTEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred             CCCCCCcccc--cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEE
Confidence            9998766432  2223678999999999999988766                999999887632  2222  3455678


Q ss_pred             EEEEcCCCCEEEEEeC-----CCcEEEEECCC------Cc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC---Ce
Q psy8448         240 DITFTADGHSVLSASS-----DGTVKMWNLKT------TE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT---NT  304 (482)
Q Consensus       240 ~l~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---~~  304 (482)
                      .+.|+|||++|+.++.     +..|.+||+.+      +. ....+.   .+...+.. .|+|+|..+++.+..+   +.
T Consensus       237 ~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~  312 (710)
T 2xdw_A          237 GAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI---DNFEGEYD-YVTNEGTVFTFKTNRHSPNYR  312 (710)
T ss_dssp             EEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE---CSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred             EEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee---CCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence            9999999999988764     56899999986      43 234443   33334443 4788884455554433   36


Q ss_pred             EEEEEcCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         305 VVIMNMQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       305 i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      |.+||+.+.   ....+..+.. ...+..++|++++.++++...|+..+||
T Consensus       313 l~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          313 LINIDFTDPEESKWKVLVPEHE-KDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             EEEEETTSCCGGGCEEEECCCS-SCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCCCcccceeccCCCC-CCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence            999998532   1234433321 2357789999888888899999988766

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=1.4e-15  Score=140.04  Aligned_cols=220  Identities=16%  Similarity=0.191  Sum_probs=152.7

Q ss_pred             CcEEEEEEcCCCCEEEEEeCC---C--eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC----
Q psy8448         101 SHVECARFSPDGQYLITGSVD---G--FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS----  171 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d----  171 (482)
                      ..+.+++|||||++||.++.+   +  .|.+|++.+++.......         .. +..++|+|+++.|+.++.+    
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---------~~-~~~~~wspdg~~l~~~~~~~~~~  128 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA---------KN-IRSLEWNEDSRKLLIVGFKRRED  128 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE---------SE-EEEEEECTTSSEEEEEEECCCC-
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC---------CC-ccceeECCCCCEEEEEEccCCCc
Confidence            468889999999999987643   3  488888887765433221         23 8899999999999888642    


Q ss_pred             -----------------------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC-------eEEEEe
Q psy8448         172 -----------------------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-------YVRIHG  221 (482)
Q Consensus       172 -----------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-------~i~i~d  221 (482)
                                             ..|.+||+.+++.+..+..  . .+..++|+|+| .++++..++       ...+|.
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~  204 (347)
T 2gop_A          129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYI  204 (347)
T ss_dssp             --------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEE
T ss_pred             CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEE
Confidence                                   5799999988887455533  3 78899999999 777776542       334443


Q ss_pred             CCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeeeeeccCCCccceeE-EEEcCCC
Q psy8448         222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD--------GTVKMWNLKTTECTSTFKSLGASDIAVNS-IHLLPKN  292 (482)
Q Consensus       222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~-i~~~~~~  292 (482)
                      +.+++. ..+..+ ..+..+  +|+|+.|+.++.+        ..|.+||  +++......   .+...+.. +.|+ ++
T Consensus       205 ~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~~~~~s-dg  274 (347)
T 2gop_A          205 WEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQAKIKD-GK  274 (347)
T ss_dssp             EETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TCCSEEEEEEEET-TE
T ss_pred             eCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc---cCCcccCCccEEc-Cc
Confidence            335543 444444 455444  9999988887754        3688888  555433332   45567776 8898 65


Q ss_pred             CCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE-EEEe
Q psy8448         293 TEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL-VVRL  353 (482)
Q Consensus       293 ~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i-~iw~  353 (482)
                        ++++++.++.+++| + +++.. .+..+   ...+.+++|+|  .++++++.++.. .+|.
T Consensus       275 --~~~~~~~~~~~~l~-~~~g~~~-~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~  328 (347)
T 2gop_A          275 --VYFTLFEEGSVNLY-IWDGEIK-PIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFT  328 (347)
T ss_dssp             --EEEEEEETTEEEEE-EESSSEE-EEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred             --EEEEEecCCcEEEE-EcCCceE-EEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence              88889999999999 8 45543 33322   56788999999  677777777654 6553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.73  E-value=3.7e-15  Score=131.66  Aligned_cols=217  Identities=16%  Similarity=0.133  Sum_probs=171.9

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      .+++|++++.++.|.+||.++|+.+..+..+.       ...+.++.+.|+|++++  +.++.|..||. +++.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~-------~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK-------GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCT-------TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc-------cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence            46789999999999999999999887766532       13578899999999888  45778999998 8999998854


Q ss_pred             ccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCceEEEeec------cccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         191 AHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKMLKEFRG------HSSFVNDITFTADGHSVLSASSDGTVKMWN  263 (482)
Q Consensus       191 ~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d  263 (482)
                      .....+.++.+.++|+.+++.+. ++.|..+|. +++.+..+..      +......+++.++|+++++...++.|..||
T Consensus        74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d  152 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA  152 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred             CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence            33457889999999999999887 788888886 7877766642      223456678899999999999999999999


Q ss_pred             CCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcc---cCcCEEEEEEcCCCCE
Q psy8448         264 LKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKR---EGGDFLCCTTSPRGEW  339 (482)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~---~~~~v~~~~~~~~g~~  339 (482)
                      .. ++.+..+..    .....++...+++ .+++++..++.|..+|.. |+.+..+.....   ....+..++..++|..
T Consensus       153 ~~-G~~~w~~~~----~~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i  226 (276)
T 3no2_A          153 PN-GQLLNSVKL----SGTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL  226 (276)
T ss_dssp             TT-SCEEEEEEC----SSCCCEEEECTTS-CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred             CC-CCEEEEEEC----CCCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence            98 998888863    2345567788887 788888888899999995 999888864321   1234788999999999


Q ss_pred             EEEEe
Q psy8448         340 IYCVG  344 (482)
Q Consensus       340 l~~~~  344 (482)
                      +++..
T Consensus       227 ~v~~~  231 (276)
T 3no2_A          227 YICNW  231 (276)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=1.7e-14  Score=131.41  Aligned_cols=214  Identities=10%  Similarity=0.096  Sum_probs=152.1

Q ss_pred             CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEE
Q psy8448         120 VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI  199 (482)
Q Consensus       120 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i  199 (482)
                      .++.|.++|..+++....+......  .........+.+. +++.+++...++.|.+||..+++.+..+.  .......+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~--~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANG--FKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHS--SCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcC--cccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEE
Confidence            3789999999999876655321100  0112346677774 34455555667899999999999988873  44678899


Q ss_pred             EEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeeccc-----cceeEEEEcCCCCEEEEEe--CCCcEEEEECCCCceee
Q psy8448         200 QFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHS-----SFVNDITFTADGHSVLSAS--SDGTVKMWNLKTTECTS  271 (482)
Q Consensus       200 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~l~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~  271 (482)
                      ++++++ .++++. .++.|.+||..+++....+....     .....+++ . +..++++.  .++.|.++|..+++...
T Consensus        90 ~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~  166 (328)
T 3dsm_A           90 HFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD  166 (328)
T ss_dssp             EEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred             EEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence            999988 455555 89999999999998877766332     14567777 3 44555554  48899999999998877


Q ss_pred             eeeccCCCccceeEEEEcCCCCCEEEEEeCC----------CeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEE
Q psy8448         272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKT----------NTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWI  340 (482)
Q Consensus       272 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d----------~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l  340 (482)
                      .+..    ......+.++|++ ++++++..+          +.|.++|.. ++....+....  ......++++|++++|
T Consensus       167 ~i~~----g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~l  239 (328)
T 3dsm_A          167 ELTI----GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTL  239 (328)
T ss_dssp             EEEC----SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEE
T ss_pred             EEEc----CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEE
Confidence            7752    2234678899988 666666554          789999994 66555554321  2357899999999999


Q ss_pred             EEEeCCcEEE
Q psy8448         341 YCVGEDMVLV  350 (482)
Q Consensus       341 ~~~~~dg~i~  350 (482)
                      +++..  .|.
T Consensus       240 yv~~~--~v~  247 (328)
T 3dsm_A          240 YWINN--DIW  247 (328)
T ss_dssp             EEESS--SEE
T ss_pred             EEEcc--EEE
Confidence            98765  566

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=7.7e-15  Score=131.83  Aligned_cols=187  Identities=12%  Similarity=0.012  Sum_probs=134.7

Q ss_pred             cccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE
Q psy8448         150 EEAVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML  228 (482)
Q Consensus       150 ~~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  228 (482)
                      .....+++|+|+++ +++++..++.|..||..++  ...+ ..+...+.+++++++|.++++...++.|.+||..+++..
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            35678999999998 7777888999999998877  4555 346677999999999997777666789999999888754


Q ss_pred             EEeecc----ccceeEEEEcCCCCEEEEE----e-------------CCCcEEEEECCCCceeeeeeccCCCccceeEEE
Q psy8448         229 KEFRGH----SSFVNDITFTADGHSVLSA----S-------------SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIH  287 (482)
Q Consensus       229 ~~~~~~----~~~i~~l~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  287 (482)
                      ......    ...+..++++|+|+++++.    +             ..+.|..++.. ++. ..+.   ........++
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~---~~~~~~~gi~  178 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI---RDRVKPNGLA  178 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE---CCCSSEEEEE
T ss_pred             EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee---cCCCCCccEE
Confidence            433221    2346789999999988873    2             13456666655 443 3332   3445668999


Q ss_pred             EcCCCCCEEEEEeCCCeEEEEEcC--CcE---EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         288 LLPKNTEHFVVCNKTNTVVIMNMQ--GQI---VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       288 ~~~~~~~~l~~~~~d~~i~i~d~~--~~~---~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      |+|++ ..+++.+.++.|.+|++.  +..   ...+ ..  ....+..++++++|+++++.  ++.|.
T Consensus       179 ~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~--~~~~p~~i~~d~~G~l~v~~--~~~v~  240 (296)
T 3e5z_A          179 FLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF-TV--EPGKTDGLRVDAGGLIWASA--GDGVH  240 (296)
T ss_dssp             ECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC--SSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred             ECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC--CCCCCCeEEECCCCCEEEEc--CCeEE
Confidence            99999 566777788999999984  443   2333 22  24456789999999866655  78888

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.71  E-value=9.5e-16  Score=154.60  Aligned_cols=233  Identities=12%  Similarity=0.082  Sum_probs=151.4

Q ss_pred             cCCCCEEEEEeCCC-----eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-----eCCCcEEEEE
Q psy8448         109 SPDGQYLITGSVDG-----FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-----SQSGKVKIWK  178 (482)
Q Consensus       109 s~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-----~~dg~i~iwd  178 (482)
                      +|+|++++....++     .+.+.+...++....+...  ....+|...+..++|||||++|+.+     +.+..|++||
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~--~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPN--GWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGG--GSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchH--HhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence            37888887665433     3444454444332222211  1112345578999999999999854     3346899999


Q ss_pred             cCCCeEe-EEeecccCCCeEEEEEccCCCEEEEEECCCe-------------EEEEeCCCCc----eEEEeeccccceeE
Q psy8448         179 IATGQCL-RKLEKAHSLGVTCIQFSRDNSQILTASFDTY-------------VRIHGLKSGK----MLKEFRGHSSFVND  240 (482)
Q Consensus       179 ~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~----~~~~~~~~~~~i~~  240 (482)
                      +.+++.+ ...  ........++|+|||+.|+.++.|..             |++|++.+++    .+.....+...+..
T Consensus       154 l~tg~~~~~~~--~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~  231 (695)
T 2bkl_A          154 VDSGEWSKVDV--IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ  231 (695)
T ss_dssp             TTTCCBCSSCC--BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred             CCCCCCcCCcc--cCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence            9998764 211  11111267899999999999988776             9999998876    23333345567889


Q ss_pred             EEEcCCCCEEEEEeCCC----cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe---CCCeEEEEEcC-C
Q psy8448         241 ITFTADGHSVLSASSDG----TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN---KTNTVVIMNMQ-G  312 (482)
Q Consensus       241 l~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~d~~i~i~d~~-~  312 (482)
                      +.|+|||++|+.++.++    .|.++|..+++... +.   .+...+....+ +++. +++.+.   .++.|.+||+. +
T Consensus       232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~---~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LV---KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EE---ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred             EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-ee---cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence            99999999998877665    67777765554333 32   33334455555 6774 555554   25789999984 3


Q ss_pred             cE--EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         313 QI--VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       313 ~~--~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ..  ...+..+. ....+..++++ ++.++++...|+..++|.
T Consensus       306 ~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          306 ARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             SGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            31  23333221 13457778888 677888999999999773

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=1.7e-13  Score=132.83  Aligned_cols=233  Identities=13%  Similarity=0.092  Sum_probs=167.1

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEeEE
Q psy8448         110 PDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA--TGQCLRK  187 (482)
Q Consensus       110 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~  187 (482)
                      |.+.++++...+++|.++|..+++.+..+...         ..+..+.|+|+++++++++.|+.|.+||+.  +++.+..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS---------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC---------CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence            44556677778999999999999988776543         346789999999999999999999999995  7777777


Q ss_pred             eecccCCCeEEEEEc----cCCCEEEEEEC-CCeEEEEeCCCCceEEEeecc-----------ccceeEEEEcCCCCEEE
Q psy8448         188 LEKAHSLGVTCIQFS----RDNSQILTASF-DTYVRIHGLKSGKMLKEFRGH-----------SSFVNDITFTADGHSVL  251 (482)
Q Consensus       188 ~~~~~~~~v~~i~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~~l~  251 (482)
                      +..  ......++|+    |+|++++++.. ++.|.++|..+.+.+..+...           ...+..+..++++..++
T Consensus       236 i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v  313 (567)
T 1qks_A          236 IKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI  313 (567)
T ss_dssp             EEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred             Eec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence            742  3346899999    69998887665 489999999999988776521           12577888888766554


Q ss_pred             -EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecC-Cc-ccCcC
Q psy8448         252 -SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSS-GK-REGGD  327 (482)
Q Consensus       252 -~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-~~-~~~~~  327 (482)
                       ....+|.|.++|....+.......  ........+.|+|++..+++++..++.|.++|. +++.+..+.. .. .|.+.
T Consensus       314 v~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~  391 (567)
T 1qks_A          314 VNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR  391 (567)
T ss_dssp             EEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred             EEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc
Confidence             445679999999987653332211  223456688999999545555667899999999 5666666654 22 12221


Q ss_pred             EEEEEEcCCCCEEE-EEe-CCcEEEEEeehh
Q psy8448         328 FLCCTTSPRGEWIY-CVG-EDMVLVVRLIQQ  356 (482)
Q Consensus       328 v~~~~~~~~g~~l~-~~~-~dg~i~iw~~~~  356 (482)
                      -..+ ++|++..+. ++. .++.|.+++...
T Consensus       392 g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          392 GANF-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             CEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            2222 688855555 443 468999887653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.70  E-value=4.5e-13  Score=120.40  Aligned_cols=237  Identities=13%  Similarity=0.060  Sum_probs=169.2

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      ....+.+++++++|+++++...++.|.+||.. ++... +...      .+...+.++++.++++.+++...++.|..+|
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP------TPDAKVMCLIVSSLGDIWFTENGANKIGKLS   89 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS------STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC------CCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence            45678999999999988887778999999987 55432 2211      1135688999999998777766678899999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE-EeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK-EFRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      .. ++............+..+++.+++..+++...++.|..+|.. ++... .+......+.+++++++++..++...++
T Consensus        90 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  167 (300)
T 2qc5_A           90 KK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNN  167 (300)
T ss_dssp             TT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             CC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCC
Confidence            87 554322212234678999999999877776668899999987 55442 2233456789999999999666666678


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      .|..||. +++... +.. ......+..+++.+++ .++++....+.|..++..+.........  ....+.+++++++|
T Consensus       168 ~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~~~i~~d~~g  241 (300)
T 2qc5_A          168 SIGRITN-TGKLEE-YPL-PTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTTGEISEYDIPT--PNARPHAITAGKNS  241 (300)
T ss_dssp             EEEEECT-TCCEEE-EEC-SSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEEEEECSS--TTCCEEEEEECSTT
T ss_pred             eEEEECC-CCcEEE-eeC-CCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCCCcEEEEECCC--CCCCceEEEECCCC
Confidence            8999998 555433 221 1334567899999987 7777776778899999966544432211  24567899999999


Q ss_pred             CEEEEEeCCcEEEE
Q psy8448         338 EWIYCVGEDMVLVV  351 (482)
Q Consensus       338 ~~l~~~~~dg~i~i  351 (482)
                      +..++...++.|..
T Consensus       242 ~l~v~~~~~~~i~~  255 (300)
T 2qc5_A          242 EIWFTEWGANQIGR  255 (300)
T ss_dssp             CEEEEETTTTEEEE
T ss_pred             CEEEeccCCCeEEE
Confidence            87666666788883

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.69  E-value=2.1e-14  Score=130.77  Aligned_cols=234  Identities=9%  Similarity=-0.003  Sum_probs=163.4

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA  180 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~  180 (482)
                      .....+.+. +++++++...++.|.+||..+++.+..+..         ......++++++++.+++...++.|.+||..
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~---------~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~  113 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG---------FTSPRYIHFLSDEKAYVTQIWDYRIFIINPK  113 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC---------CSSEEEEEEEETTEEEEEEBSCSEEEEEETT
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC---------CCCCcEEEEeCCCeEEEEECCCCeEEEEECC
Confidence            446777774 455556666689999999999998776632         2468899999988544444488999999999


Q ss_pred             CCeEeEEeecccC----CCeEEEEEccCCCEEEEEE--CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         181 TGQCLRKLEKAHS----LGVTCIQFSRDNSQILTAS--FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       181 ~~~~~~~~~~~~~----~~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      +++....+..+..    .....+++  ++..++++.  .++.|.++|+++++.+..+.. ......+.++|+|++++++.
T Consensus       114 t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          114 TYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITD  190 (328)
T ss_dssp             TTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBC
T ss_pred             CCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEEC
Confidence            9988777643221    14556777  345566655  488999999999998887764 33467899999998776665


Q ss_pred             CC----------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcc
Q psy8448         255 SD----------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKR  323 (482)
Q Consensus       255 ~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~  323 (482)
                      .+          +.|.++|..+++....+..  ........++++|++ ..++++..  .|.+||.. ++... ......
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~--~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~-~~~~~~  264 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKF--KLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPV-RPFLEF  264 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEEC--CTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCS-SCSBCC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEec--CCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceee-eeeecC
Confidence            54          7899999999887766642  112367899999988 56665554  89999984 44321 111000


Q ss_pred             cCcCEEEEEEcCC-CCEEEEE----eCCcEEEEEe
Q psy8448         324 EGGDFLCCTTSPR-GEWIYCV----GEDMVLVVRL  353 (482)
Q Consensus       324 ~~~~v~~~~~~~~-g~~l~~~----~~dg~i~iw~  353 (482)
                      .......++++|+ +...++.    ..++.|.+|+
T Consensus       265 ~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          265 RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             CCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence            1356789999995 5555555    5688999554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.69  E-value=1.1e-14  Score=147.75  Aligned_cols=294  Identities=12%  Similarity=0.080  Sum_probs=187.9

Q ss_pred             hHHHHHHHhHhhhhhccCCCCCCceeeccCCc-----ccccccccc----ccccccc--eeeecCCCCcEEEEEEcCCCC
Q psy8448          45 SRLLALLGQALKWQQHQGLLPPGTTIDLFRGK-----AAMKDQEEE----KYPTQLS--KQIKFGSKSHVECARFSPDGQ  113 (482)
Q Consensus        45 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~----~~~~~~~--~~~~~~h~~~v~~~~~s~~~~  113 (482)
                      .++...+...++........|+|..+.+....     ..+|.....    ..+..+.  ..+..+|...+..++|||||+
T Consensus        96 ~~l~~~~~~~~~~~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~  175 (741)
T 1yr2_A           96 AALEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR  175 (741)
T ss_dssp             HHHHHHHHHHSCCCEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS
T ss_pred             HHHHHHHHHhhcccccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC
Confidence            45555555555565566666888877665422     333443321    1111110  012334555789999999999


Q ss_pred             EEEEEeCC-----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc--------------E
Q psy8448         114 YLITGSVD-----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK--------------V  174 (482)
Q Consensus       114 ~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~--------------i  174 (482)
                      +||.+..+     ..|++||+.+++..... ..        ...+..++|+|| +.|+.++.++.              |
T Consensus       176 ~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~--------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v  245 (741)
T 1yr2_A          176 LLAYSVQDGGSDWRTVKFVGVADGKPLADE-LK--------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV  245 (741)
T ss_dssp             EEEEEEEETTCSEEEEEEEETTTCCEEEEE-EE--------EEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred             EEEEEEcCCCCceEEEEEEECCCCCCCCcc-CC--------CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence            99887643     46999999998865321 11        122357899999 99998887654              8


Q ss_pred             EEEEcCCCeE--eEEee-cccCCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCC--ceEEEeeccccceeEEEEc
Q psy8448         175 KIWKIATGQC--LRKLE-KAHSLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSG--KMLKEFRGHSSFVNDITFT  244 (482)
Q Consensus       175 ~iwd~~~~~~--~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~i~~l~~~  244 (482)
                      ++|++.++..  ...+. ..+...+..+.|+|||++|+..+.++     .|++||+.++  +....+..+...+.... +
T Consensus       246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~  324 (741)
T 1yr2_A          246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-D  324 (741)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-E
T ss_pred             EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-e
Confidence            8999877652  22221 12233588999999999988777544     8999999877  31455555555555543 4


Q ss_pred             CCCCEEEEEeCC----CcEEEEECCCCc-eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEE
Q psy8448         245 ADGHSVLSASSD----GTVKMWNLKTTE-CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRS  317 (482)
Q Consensus       245 ~~~~~l~~~~~d----g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~  317 (482)
                      |+++.|+..+.+    +.|.+||+.++. ....+..  .+...+..+.+.  +..++++...++..++|.+  +++....
T Consensus       325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~  400 (741)
T 1yr2_A          325 GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP--ESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGA  400 (741)
T ss_dssp             EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC--CCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred             ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec--CCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceee
Confidence            889988887764    459999998752 2233321  344456677777  3368888888888777655  5776666


Q ss_pred             ecCCcccCcCEEEEEEcCCCCEEEEE----eCCcEEEEEeeh
Q psy8448         318 LSSGKREGGDFLCCTTSPRGEWIYCV----GEDMVLVVRLIQ  355 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g~~l~~~----~~dg~i~iw~~~  355 (482)
                      +....  ...+..++++|+++.|+..    ...+.++.|++.
T Consensus       401 l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          401 VSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             CBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred             ccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            65321  4568889999998866633    234788888875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.69  E-value=9.1e-15  Score=129.44  Aligned_cols=192  Identities=9%  Similarity=-0.001  Sum_probs=133.3

Q ss_pred             cEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy8448         152 AVMSLAYSRDSEMLA-SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  230 (482)
                      ...+++++++++.++ +.+.++.|.+||..+.... .+.......+.++++.+++..+++.. ++.|.+||....... .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-V  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-E
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-e
Confidence            678999999998666 4467889999997654432 22123335678899999988555544 889999998765433 3


Q ss_pred             ee-ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         231 FR-GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       231 ~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                      +. .....+.+++++++++.+++...++.|.+|+..+........   .....+..+++.+++ .++++...++.|.+|+
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF---TGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC---CSCCSCCCEEECTTC-CEEEEEGGGTEEEEEC
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc---ccCCCceeEEEeCCC-CEEEEECCCCEEEEEe
Confidence            32 233568999999999977777778899999866544322211   223457889999988 6777777788999999


Q ss_pred             cCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         310 MQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      ..+.........  ....+..++++++|..+++...++.|.+|
T Consensus       178 ~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~  218 (270)
T 1rwi_B          178 AESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKL  218 (270)
T ss_dssp             TTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred             cCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence            966544433222  13567899999999777777778888833

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.68  E-value=3.1e-14  Score=125.80  Aligned_cols=181  Identities=15%  Similarity=0.183  Sum_probs=145.4

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc-cccee
Q psy8448         161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH-SSFVN  239 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~  239 (482)
                      .++.|++++.++.|.+||.++++.+.++.......+.++++.|+|+.++  +.++.|..||. +++.+..+..+ ...+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            3578999999999999999999999998432224688999999999888  45788999998 89999988865 34788


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEECCCCceeeeeeccC---CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEE
Q psy8448         240 DITFTADGHSVLSASS-DGTVKMWNLKTTECTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIV  315 (482)
Q Consensus       240 ~l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  315 (482)
                      ++.+.++|+.+++.+. ++.|..+|. +++.+..+....   .+......++..+++ .++++...++.|..||.+|+.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPNGQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTTSCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCCCCEE
Confidence            9999999999999887 778888885 677766664221   122345566788888 7899999999999999999998


Q ss_pred             EEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         316 RSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       316 ~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ..+...    ....++...++|+.+++++.++.|.
T Consensus       159 w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~  189 (276)
T 3no2_A          159 NSVKLS----GTPFSSAFLDNGDCLVACGDAHCFV  189 (276)
T ss_dssp             EEEECS----SCCCEEEECTTSCEEEECBTTSEEE
T ss_pred             EEEECC----CCccceeEcCCCCEEEEeCCCCeEE
Confidence            888763    2345678889999999999888888

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.64  E-value=4.8e-13  Score=129.69  Aligned_cols=236  Identities=14%  Similarity=0.133  Sum_probs=163.5

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecC--CCceeeccccccccccccccccEEEEEEc----CCCCEEEEEe-CCCc
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFT--TGKIRKDLKYQAQDNFMLMEEAVMSLAYS----RDSEMLASGS-QSGK  173 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~~~~l~~~~-~dg~  173 (482)
                      ..+..+.|+|||+++++++.|+.|.+||+.  +++....+...         .....++|+    |+|+++++++ .+++
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G---------~~P~~ia~s~~~~pDGk~l~v~n~~~~~  267 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG---------SEARSIETSKMEGWEDKYAIAGAYWPPQ  267 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC---------SEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC---------CCCceeEEccccCCCCCEEEEEEccCCe
Confidence            356799999999999999999999999996  77666555432         346799999    6999888876 4589


Q ss_pred             EEEEEcCCCeEeEEeecc---------c---------------------------------------------CCCeEEE
Q psy8448         174 VKIWKIATGQCLRKLEKA---------H---------------------------------------------SLGVTCI  199 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~---------~---------------------------------------------~~~v~~i  199 (482)
                      |.++|..+.+.+..+...         |                                             ......+
T Consensus       268 v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~  347 (567)
T 1qks_A          268 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG  347 (567)
T ss_dssp             EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred             EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCc
Confidence            999998887776654211         0                                             0112356


Q ss_pred             EEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeec-----cccceeEEE-EcCCCCEEE-EEe-CCCcEEEEECCC----
Q psy8448         200 QFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRG-----HSSFVNDIT-FTADGHSVL-SAS-SDGTVKMWNLKT----  266 (482)
Q Consensus       200 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~l~-~~~~~~~l~-~~~-~dg~i~i~d~~~----  266 (482)
                      .|+|++++++++. .++.|.++|+.+++.+..+..     |.+  .... ++|++..+. ++. .++.|.++|..+    
T Consensus       348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~  425 (567)
T 1qks_A          348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP  425 (567)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred             eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence            7999999887765 578999999999987766643     322  1222 578755554 443 468999999987    


Q ss_pred             ---CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-------CCeEEEEEcC-C-----c-EEEEecC-----Cccc
Q psy8448         267 ---TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-------TNTVVIMNMQ-G-----Q-IVRSLSS-----GKRE  324 (482)
Q Consensus       267 ---~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-------d~~i~i~d~~-~-----~-~~~~~~~-----~~~~  324 (482)
                         .+.+.++..   ....-..+..+|++ ..+.+...       .++|.++|+. .     . ....+..     ....
T Consensus       426 ~~~~kvv~~i~~---~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~  501 (567)
T 1qks_A          426 DNAWKILDSFPA---LGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG  501 (567)
T ss_dssp             TTBTSEEEEEEC---SCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS
T ss_pred             cccCEEEEEEec---CCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC
Confidence               556666652   22333457789998 56666552       3599999984 3     1 1133321     1111


Q ss_pred             CcCEEEEEEcCCCCEEEEEe-----CCcEEEE
Q psy8448         325 GGDFLCCTTSPRGEWIYCVG-----EDMVLVV  351 (482)
Q Consensus       325 ~~~v~~~~~~~~g~~l~~~~-----~dg~i~i  351 (482)
                      ...+..+.|+|+|+++..+.     .++.|.|
T Consensus       502 ~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v  533 (567)
T 1qks_A          502 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVV  533 (567)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred             CcceEeeeECCCCCEEEEEeecCCCCCCcEEE
Confidence            45788999999999988764     3788993

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.64  E-value=4.2e-14  Score=143.58  Aligned_cols=232  Identities=16%  Similarity=0.102  Sum_probs=146.6

Q ss_pred             cCCCCEEEEEeCCC---eEEEEe--cC---CCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEE
Q psy8448         109 SPDGQYLITGSVDG---FIEVWN--FT---TGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVK  175 (482)
Q Consensus       109 s~~~~~l~s~~~dg---~v~iwd--~~---~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~  175 (482)
                      +|+|++++....++   .-.+|-  ..   .++....+....  ...+|...+..++|||||++|+.++.+     ..|+
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~--l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNT--WAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGG--CC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHH--hccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence            38999888765433   244454  33   333222111111  111233468899999999999987654     3699


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCe--------------EEEEeCCCCce--EEEee--ccccc
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTY--------------VRIHGLKSGKM--LKEFR--GHSSF  237 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~--------------i~i~d~~~~~~--~~~~~--~~~~~  237 (482)
                      +||+.+++.+...  .+...+..++|+|| +.|+.+..++.              |++|++.+++.  ...+.  .+...
T Consensus       193 v~dl~tg~~~~~~--~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          193 FVGVADGKPLADE--LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR  269 (741)
T ss_dssp             EEETTTCCEEEEE--EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             EEECCCCCCCCcc--CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence            9999999876542  12222357899999 99998876654              89999987752  22232  23345


Q ss_pred             eeEEEEcCCCCEEEEEeCCC-----cEEEEECCCC--ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC----CCeEE
Q psy8448         238 VNDITFTADGHSVLSASSDG-----TVKMWNLKTT--ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK----TNTVV  306 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----d~~i~  306 (482)
                      +..+.|+|||++|+..+.++     .|.+||+.++  ++...+.   .+...+... ++|++ ..|+..+.    .+.|.
T Consensus       270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~  344 (741)
T 1yr2_A          270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIV  344 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCEEE-EEEET-TEEEEEECTTCTTCEEE
T ss_pred             EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceEEE-EeccC-CEEEEEECCCCCCCEEE
Confidence            88999999999988877543     7999999876  3133333   233333444 34787 45555444    34599


Q ss_pred             EEEcCC--cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         307 IMNMQG--QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       307 i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      +||+.+  .....+..+.  ...+..++++ ++.++++...|+..+||.
T Consensus       345 ~~d~~~~~~~~~~l~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          345 RVDLSGSTPRFDTVVPES--KDNLESVGIA-GNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             EEECSSSSCEEEEEECCC--SSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred             EEeCCCCccccEEEecCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            999854  3444444332  3446677887 667788889999998773

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=6.6e-12  Score=112.65  Aligned_cols=234  Identities=12%  Similarity=0.053  Sum_probs=165.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      +...+.+++++++|.++++...++.|..|+.. ++. ..+...      .....+.++++.++++++++...++.|..||
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  126 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLP------NPDSAPYGITEGPNGDIWFTEMNGNRIGRIT  126 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECS------STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCC------CcCCCceeeEECCCCCEEEEecCCceEEEEC
Confidence            45679999999999988887778899999976 432 222211      1135688999999998777777788999999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE-eeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      . +++............+..+++.+++...++...++.|..||. +++.... .......+.+++++++++++++...++
T Consensus       127 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  204 (299)
T 2z2n_A          127 D-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN  204 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             C-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence            8 555443322234556899999999987776666789999998 6665432 233445688999999999777666678


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      .|.+||. +++... +. .......+.++++.+++ .++++...++.|..||.++. +..+... .....+.++++ ++|
T Consensus       205 ~i~~~~~-~g~~~~-~~-~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~g~-~~~~~~~-~~~~~~~~i~~-~~g  277 (299)
T 2z2n_A          205 KIGRITT-SGEITE-FK-IPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTSNNI-IEEYPIQ-IKSAEPHGICF-DGE  277 (299)
T ss_dssp             EEEEECT-TCCEEE-EE-CSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEETTTE-EEEEECS-SSSCCEEEEEE-CSS
T ss_pred             eEEEECC-CCcEEE-EE-CCCCCCCceeEEECCCC-CEEEeccCCceEEEECCCCc-eEEEeCC-CCCCccceEEe-cCC
Confidence            9999999 665332 32 11344578899999998 66666667889999999654 3333221 12456889999 888


Q ss_pred             CEEEEEeCCcEEE
Q psy8448         338 EWIYCVGEDMVLV  350 (482)
Q Consensus       338 ~~l~~~~~dg~i~  350 (482)
                      .+.++.. .+.+.
T Consensus       278 ~l~v~~~-~~~l~  289 (299)
T 2z2n_A          278 TIWFAME-CDKIG  289 (299)
T ss_dssp             CEEEEET-TTEEE
T ss_pred             CEEEEec-CCcEE
Confidence            8776655 55666

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=6.3e-13  Score=120.33  Aligned_cols=242  Identities=13%  Similarity=0.133  Sum_probs=164.0

Q ss_pred             CCcEEEEEEcCCCCEEEE-------EeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC-CCEEEEEeCC
Q psy8448         100 KSHVECARFSPDGQYLIT-------GSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQS  171 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s-------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~d  171 (482)
                      -....+++|++++.++++       +..++.|.+||..+++...... .   ...++...+.+++++++ ++++++ +..
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~---~~~~~~~~~~~i~~~~~~g~l~v~-~~~   91 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-P---EVNGYGGIPAGCQCDRDANQLFVA-DMR   91 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-C---EETTEECCEEEEEECSSSSEEEEE-ETT
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-c---ccCCCCCCCceEEEecCCCcEEEE-ECC
Confidence            345689999999988887       5678899999988877542211 0   01113457899999999 664444 444


Q ss_pred             CcEEEEEcCCCeEeEE-eec---ccCCCeEEEEEccCCCEEEEEECC---------------CeEEEEeCCCCceEEEee
Q psy8448         172 GKVKIWKIATGQCLRK-LEK---AHSLGVTCIQFSRDNSQILTASFD---------------TYVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~-~~~---~~~~~v~~i~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~  232 (482)
                      +.|.+||.. ++.... ...   .....+.+++++++|...++...+               +.|..+|.. ++... +.
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~  168 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VD  168 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-ec
Confidence            579999987 664332 211   112358899999999877766544               578888875 55433 33


Q ss_pred             ccccceeEEEEc----CCCCEEEEE-eCCCcEEEEECC-CCcee--eeeeccCCCc-cceeEEEEcCCCCCEEEEEeCCC
Q psy8448         233 GHSSFVNDITFT----ADGHSVLSA-SSDGTVKMWNLK-TTECT--STFKSLGASD-IAVNSIHLLPKNTEHFVVCNKTN  303 (482)
Q Consensus       233 ~~~~~i~~l~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~--~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~d~  303 (482)
                      .+......++++    |+++.++++ ..++.|.+||+. +++..  ..+.....+. .....++++++| .++++...++
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~  247 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSS  247 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTT
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCC
Confidence            334456889999    999766555 467899999986 44321  1222222332 557889999998 7888877889


Q ss_pred             eEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEE-eCCcEEEEEe
Q psy8448         304 TVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV-GEDMVLVVRL  353 (482)
Q Consensus       304 ~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~-~~dg~i~iw~  353 (482)
                      .|.+||.. ++.+..+..+   ...+.+++++|+|+.|+++ ..++.|..++
T Consensus       248 ~i~~~d~~~g~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          248 HIEVFGPDGGQPKMRIRCP---FEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             EEEEECTTCBSCSEEEECS---SSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCcEeEEEeCC---CCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            99999996 6665555433   4678999999999966554 4567888444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.61  E-value=3.1e-12  Score=117.96  Aligned_cols=221  Identities=10%  Similarity=0.023  Sum_probs=142.4

Q ss_pred             EcCCCCEEEEEeC--CC---eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe----------CCC
Q psy8448         108 FSPDGQYLITGSV--DG---FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS----------QSG  172 (482)
Q Consensus       108 ~s~~~~~l~s~~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~----------~dg  172 (482)
                      ..|+++++.+...  ..   .|.++|..+++.+..+...        ..+  .++++||+++++++.          .++
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g--------~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~   97 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG--------FLP--NPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC--------CCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence            3466766666543  22   8899999999887665543        123  899999999999886          367


Q ss_pred             cEEEEEcCCCeEeEEeecc-c-----CCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEE-eeccccceeEEEE
Q psy8448         173 KVKIWKIATGQCLRKLEKA-H-----SLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKE-FRGHSSFVNDITF  243 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~-~-----~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~  243 (482)
                      .|.+||..+.+.+..+..+ .     ......++|+|+|++|+++..  ++.|.++| .+++.+.. +.. ..   ++.+
T Consensus        98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~  172 (373)
T 2mad_H           98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHI  172 (373)
T ss_pred             eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEE
Confidence            8999999988887776432 0     123458999999999998874  47899999 99988877 542 22   2444


Q ss_pred             cCCC-CEEEEEeCCCcEEEEECCCCceeeeeec---cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcE---EE
Q psy8448         244 TADG-HSVLSASSDGTVKMWNLKTTECTSTFKS---LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI---VR  316 (482)
Q Consensus       244 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~  316 (482)
                      .|++ +.+++.+.||.+.++|. +++.......   ......-.....+.+++..++++. ..+.+.+.|+.+..   +.
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~  250 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKA  250 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEee
Confidence            5554 45667778999999999 7776533220   001111123345666664444444 67899999985332   22


Q ss_pred             EecCCc-------ccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         317 SLSSGK-------REGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       317 ~~~~~~-------~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      .+....       ........++++|+++.+++...
T Consensus       251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~  286 (373)
T 2mad_H          251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS  286 (373)
T ss_pred             eeeecCCcccccceecCceEeEEECCCCCEEEEEec
Confidence            221100       00122334678888887777654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.60  E-value=4.6e-12  Score=113.58  Aligned_cols=231  Identities=10%  Similarity=0.093  Sum_probs=158.2

Q ss_pred             CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          98 GSKSHVECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        98 ~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .+..--.+..|+|+ +.++++...++.|+.||..+++.. .+.         ....+.+++++++++++++ . ++.|.+
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---------~~~~~~~i~~~~dG~l~v~-~-~~~l~~   77 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT---------MDAPVSSVALRQSGGYVAT-I-GTKFCA   77 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE---------CSSCEEEEEEBTTSSEEEE-E-TTEEEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe---------CCCceEEEEECCCCCEEEE-E-CCeEEE
Confidence            34445678999995 455666667899999999877642 121         1357899999999995444 4 568999


Q ss_pred             EEcCCCeEeEEeecc---cCCCeEEEEEccCCCEEEEEEC-----------CCeEEEEeCCCCceEEEeeccccceeEEE
Q psy8448         177 WKIATGQCLRKLEKA---HSLGVTCIQFSRDNSQILTASF-----------DTYVRIHGLKSGKMLKEFRGHSSFVNDIT  242 (482)
Q Consensus       177 wd~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~  242 (482)
                      ||..+++........   ....+..++++|+|++.++...           .+.|..++.. ++. ..+.........++
T Consensus        78 ~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~  155 (297)
T 3g4e_A           78 LNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLD  155 (297)
T ss_dssp             EETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEE
T ss_pred             EECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceE
Confidence            999887654332111   1234788999999986665422           2345555543 333 22333445578999


Q ss_pred             EcCCCCEEEEE-eCCCcEEEEEC--CCCcee--eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEE
Q psy8448         243 FTADGHSVLSA-SSDGTVKMWNL--KTTECT--STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVR  316 (482)
Q Consensus       243 ~~~~~~~l~~~-~~dg~i~i~d~--~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~  316 (482)
                      |+|+++.|+.+ +.++.|.+||+  .++...  ..+............+++.++| .++++....+.|..||.. ++.+.
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEE
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEE
Confidence            99999877554 55788999997  455432  2222222334567889999998 788888888999999995 88888


Q ss_pred             EecCCcccCcCEEEEEEc-CCCCEEEEEeCC
Q psy8448         317 SLSSGKREGGDFLCCTTS-PRGEWIYCVGED  346 (482)
Q Consensus       317 ~~~~~~~~~~~v~~~~~~-~~g~~l~~~~~d  346 (482)
                      .+...   ...+++++|. |+++.|++.+..
T Consensus       235 ~i~~p---~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          235 TVKLP---VDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEECS---SSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEECC---CCCceEEEEeCCCCCEEEEEcCC
Confidence            87654   4578999998 888888766643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.60  E-value=5.6e-13  Score=121.17  Aligned_cols=224  Identities=12%  Similarity=0.062  Sum_probs=149.5

Q ss_pred             EEcCCCCEEEEEeC-----CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe----------CC
Q psy8448         107 RFSPDGQYLITGSV-----DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS----------QS  171 (482)
Q Consensus       107 ~~s~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~----------~d  171 (482)
                      ...|+++.++....     ++.|.+.|..+++.+..+...        ..+ . ++++|++++++++.          .+
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--------~~P-~-va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--------FLP-N-PVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--------SSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--------CCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence            34678888877764     679999999999988877654        233 4 99999999888875          35


Q ss_pred             CcEEEEEcCCCeEeEEeeccc------CCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEE
Q psy8448         172 GKVKIWKIATGQCLRKLEKAH------SLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITF  243 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~  243 (482)
                      +.|.+||..+.+.+..+..+.      ......++|+|||++++++..  ++.|.++|+.+++.+.++.....   ...+
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~  185 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIF  185 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceee
Confidence            789999999999888874332      124567899999999998874  68999999999999888863221   2233


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCC-Cceeeeee-ccCCCccce-eEEEEc-CCCCCEEEEEeCCCeEEEEEcCCcEEEEec
Q psy8448         244 TADGHSVLSASSDGTVKMWNLKT-TECTSTFK-SLGASDIAV-NSIHLL-PKNTEHFVVCNKTNTVVIMNMQGQIVRSLS  319 (482)
Q Consensus       244 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~~~~v-~~i~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  319 (482)
                      ....+.+++.+.||.+.+.++.+ ++...... .......++ ....|. ++| .+++ .+.+|.+++.|..+.......
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~  263 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLP  263 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECC
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeec
Confidence            33456777888899999999876 55422111 111111222 224554 454 4444 566899999999544322221


Q ss_pred             CCc----------ccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         320 SGK----------REGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       320 ~~~----------~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      ...          ........++++++++.++....
T Consensus       264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~  299 (386)
T 3sjl_D          264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD  299 (386)
T ss_dssp             CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             ceeccccccccccccCCCcceeeECCCCCeEEEEec
Confidence            100          00112234777899998887653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.59  E-value=5.9e-14  Score=128.14  Aligned_cols=181  Identities=8%  Similarity=0.060  Sum_probs=135.1

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeec---cccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD---LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      +++.+++++...++++|+.++ +.+|++++.+....   ..... .....+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999875 66798764431000   00000 01122456 999999  88999998 889999999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCc
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGT  258 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~  258 (482)
                      +.+....... ..+..++.++.+.+.  .+++++.||.|.+||+.++....    +...|+|++|+|+|  ++.|..||.
T Consensus       113 v~sl~~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~  183 (388)
T 1xip_A          113 LEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS  183 (388)
T ss_dssp             SSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred             chhhhccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence            9876654444 466777888877654  38889999999999999887643    45679999999999  788999999


Q ss_pred             EEEEECCCCce--eeeeecc------CCCccceeEEEEcCCCCCEEEE
Q psy8448         259 VKMWNLKTTEC--TSTFKSL------GASDIAVNSIHLLPKNTEHFVV  298 (482)
Q Consensus       259 i~i~d~~~~~~--~~~~~~~------~~~~~~v~~i~~~~~~~~~l~~  298 (482)
                      +++|+...++.  ...+...      .++...|.+|.|.+++ .++++
T Consensus       184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~  230 (388)
T 1xip_A          184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV  230 (388)
T ss_dssp             EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred             EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence            99999887775  4444211      1367889999999987 56655

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.59  E-value=9e-13  Score=119.33  Aligned_cols=193  Identities=11%  Similarity=0.095  Sum_probs=129.1

Q ss_pred             ccEEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCeEeEEee---cccCCCeEEEEEccC-CCEEEEEECCCeEEE
Q psy8448         151 EAVMSLAYSRDSEMLAS-------GSQSGKVKIWKIATGQCLRKLE---KAHSLGVTCIQFSRD-NSQILTASFDTYVRI  219 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i  219 (482)
                      ....+++|+++++.+++       ...++.|.+||..+++......   .++...+..++++++ +. +.+++..+.|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEE
Confidence            34678999999987777       5678899999988776543221   014456899999998 65 555555558999


Q ss_pred             EeCCCCceEEE-eec----cccceeEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceeeeeeccCCC
Q psy8448         220 HGLKSGKMLKE-FRG----HSSFVNDITFTADGHSVLSASSD---------------GTVKMWNLKTTECTSTFKSLGAS  279 (482)
Q Consensus       220 ~d~~~~~~~~~-~~~----~~~~i~~l~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~  279 (482)
                      ||.+ ++.... ...    ....+.+++++++++++++...+               +.|..||.. ++.....    ..
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----~~  170 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD----TA  170 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE----EE
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec----cC
Confidence            9988 665433 221    12358899999999877766554               567777765 5443322    22


Q ss_pred             ccceeEEEEc----CCCCCEEEEEeCCCeEEEEEcC--CcEE--EEecCCcccC-cCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         280 DIAVNSIHLL----PKNTEHFVVCNKTNTVVIMNMQ--GQIV--RSLSSGKREG-GDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       280 ~~~v~~i~~~----~~~~~~l~~~~~d~~i~i~d~~--~~~~--~~~~~~~~~~-~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ......++++    |++..++++...++.|.+|+..  +...  ..+.....+. ..+..++++++|+++++...++.|.
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            2345788999    9874345555678999999974  3311  1111111112 4578899999999888887888888

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.58  E-value=3.7e-12  Score=119.25  Aligned_cols=239  Identities=10%  Similarity=0.012  Sum_probs=164.2

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC--cEEEEE
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG--KVKIWK  178 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg--~i~iwd  178 (482)
                      .....|+|+++++++++...++.|++||..++.........         .... ++|+|+++.|+++..++  .|.+++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------KGGK-PAVTKDKQRVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---------CBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---------CCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence            46889999999998888777899999999887765433221         1233 89999999999988766  788888


Q ss_pred             cCCCeEeEEe---ecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE----eeccccce-e-EEEEcCC-CC
Q psy8448         179 IATGQCLRKL---EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE----FRGHSSFV-N-DITFTAD-GH  248 (482)
Q Consensus       179 ~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i-~-~l~~~~~-~~  248 (482)
                      ...+.....+   .......+.+++++|++..|+++..++.|+.||..++.....    ..++...- . .++|+|+ +.
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          201 KASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             GGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred             cCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence            7765543332   111445678899999655666677788999999987764322    22222222 3 9999995 55


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeeccC------------CCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEc-CCcE
Q psy8448         249 SVLSASSDGTVKMWNLKTTECTSTFKSLG------------ASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNM-QGQI  314 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~-~~~~  314 (482)
                      ++++-..++.|+.|+....  ...+....            ..-.....++++|++ .++++-+ .++.|+.|+. ++. 
T Consensus       281 lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~-  356 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGY-  356 (409)
T ss_dssp             EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTE-
T ss_pred             EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCE-
Confidence            5555566788999997643  22222100            001346889999998 6888877 8899999996 554 


Q ss_pred             EEEecCCc------------ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         315 VRSLSSGK------------REGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       315 ~~~~~~~~------------~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      +..+....            ........++++++|.++++-..++.|+.+.
T Consensus       357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence            44443320            0124578999999988888888888988443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.57  E-value=1.8e-12  Score=121.33  Aligned_cols=198  Identities=13%  Similarity=0.114  Sum_probs=138.9

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC--eEEEEeCCCCceE
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT--YVRIHGLKSGKML  228 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~  228 (482)
                      .....|+|+++++++++...++.|++||..++...... .... ... ++|+++++.|+++..++  .|.+++...+...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            46889999999997777777789999999877766554 2322 233 99999999999888766  8999998766544


Q ss_pred             EEe----eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeec--cCCCcc--ceeEEEEcCCCCCEEEEEe
Q psy8448         229 KEF----RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS--LGASDI--AVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       229 ~~~----~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~--~v~~i~~~~~~~~~l~~~~  300 (482)
                      ..+    ......+.+++++|++..|+++..++.|..||..++.... +..  ..+...  +...++|+|++..++++..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-EecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            443    2245667899999955556667778899999998775322 210  001111  1239999996547777777


Q ss_pred             CCCeEEEEEcCCcEEEEecCC-c----------ccCcCEEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8448         301 KTNTVVIMNMQGQIVRSLSSG-K----------REGGDFLCCTTSPRGEWIYCVG-EDMVLVVR  352 (482)
Q Consensus       301 ~d~~i~i~d~~~~~~~~~~~~-~----------~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw  352 (482)
                      ..+.|+.|+.++......... .          ........++++|+|+++++-. .++.|+.|
T Consensus       287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~  350 (409)
T 3hrp_A          287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL  350 (409)
T ss_dssp             TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred             CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence            889999999977633322211 0          0023478899999999777777 78899943

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.57  E-value=2.2e-11  Score=110.68  Aligned_cols=227  Identities=13%  Similarity=0.063  Sum_probs=154.7

Q ss_pred             CcEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         101 SHVECARFSPDG-QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       101 ~~v~~~~~s~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      .-..+..|+|++ .++++...++.|..||..+++... +..         ...+.+++|+|+++++++. .+ .|.+||.
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~---------~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~  116 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL---------PFMGSALAKISDSKQLIAS-DD-GLFLRDT  116 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC---------SSCEEEEEEEETTEEEEEE-TT-EEEEEET
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC---------CCcceEEEEeCCCeEEEEE-CC-CEEEEEC
Confidence            345788999974 455666678899999998775432 111         2468999999999876654 44 4999998


Q ss_pred             CCCeEeEEeecc---cCCCeEEEEEccCCCEEEEEEC------CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448         180 ATGQCLRKLEKA---HSLGVTCIQFSRDNSQILTASF------DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       180 ~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  250 (482)
                      .+++........   ....+..++++|+|+++++...      .+.|..++  +++.. .+.........++|+|+++.+
T Consensus       117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTG  193 (326)
T ss_dssp             TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEE
T ss_pred             CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEE
Confidence            887754332111   1235889999999986665432      25666676  45433 333334457799999999877


Q ss_pred             EEE-eCCCcEEEEECC--CC-cee--eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCccc
Q psy8448         251 LSA-SSDGTVKMWNLK--TT-ECT--STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE  324 (482)
Q Consensus       251 ~~~-~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  324 (482)
                      +.+ +.++.|.+||+.  ++ ...  ..+............+++.++| .++++...++.|..|+.+++.+..+...   
T Consensus       194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~~~~i~~~---  269 (326)
T 2ghs_A          194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNHIARYEVP---  269 (326)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCEEEEEECS---
T ss_pred             EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCEEEEEECC---
Confidence            655 456889999986  55 321  2222111233456789999998 6777777778999999988877776643   


Q ss_pred             CcCEEEEEEc-CCCCEEEEEeCC
Q psy8448         325 GGDFLCCTTS-PRGEWIYCVGED  346 (482)
Q Consensus       325 ~~~v~~~~~~-~~g~~l~~~~~d  346 (482)
                      ...+.+++|+ ++++.|++++..
T Consensus       270 ~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          270 GKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCcEEEEEecCCCCEEEEEecC
Confidence            4568999998 888877665544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=2.2e-11  Score=112.30  Aligned_cols=234  Identities=12%  Similarity=0.079  Sum_probs=156.4

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC--CC
Q psy8448         105 CARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ--SG  172 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~--dg  172 (482)
                      .++++|||++|+.+.          .++.|.+||..+.+....+......... +......+.|+|+|++|+++..  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~-~g~~p~~~~~spDG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc-cCCCccceEECCCCCEEEEEecCCCC
Confidence            899999999998875          3678999999988877766543111100 0123558999999999999874  47


Q ss_pred             cEEEEEcCCCeEeEE-eecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEEee-----ccccce-eEEEEc
Q psy8448         173 KVKIWKIATGQCLRK-LEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKEFR-----GHSSFV-NDITFT  244 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i-~~l~~~  244 (482)
                      .|.++| .+++.+.. +.  ...   ++.+.|++ ..+++.+.||.+.++|. +++......     ....++ ....+.
T Consensus       149 ~v~viD-~t~~~~~~~i~--~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLS--SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             eEEEEE-CCCCEEeEEcC--CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence            899999 99988777 52  121   24455654 45566778999999999 887663322     111221 234566


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCc--eeeeeeccC-------CCccceeEEEEcCCCCCEEEEEe---------CCCeEE
Q psy8448         245 ADGHSVLSASSDGTVKMWNLKTTE--CTSTFKSLG-------ASDIAVNSIHLLPKNTEHFVVCN---------KTNTVV  306 (482)
Q Consensus       245 ~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-------~~~~~v~~i~~~~~~~~~l~~~~---------~d~~i~  306 (482)
                      +++..++..+.++.+.+.|+....  ....+....       ........+.++|++..++++..         ..+.|.
T Consensus       222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence            666665555578899999997653  222221100       01222345788999855555443         236799


Q ss_pred             EEEc-CCcEEEEecCCcccCcCEEEEEEcCCCC-EEEEEe-CCcEEE
Q psy8448         307 IMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVG-EDMVLV  350 (482)
Q Consensus       307 i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~-~dg~i~  350 (482)
                      ++|. +++.+..+...    .....++|+|||+ .++++. .++.|.
T Consensus       302 VID~~t~~vv~~i~~g----~~p~~i~~s~Dg~~~l~v~~~~~~~V~  344 (373)
T 2mad_H          302 SVTGLVGQTSSQISLG----HDVDAISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             EEECCCCEEEEEEECC----CCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence            9999 57777777643    3568999999999 777777 589999

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.57  E-value=3.1e-12  Score=115.18  Aligned_cols=231  Identities=11%  Similarity=0.117  Sum_probs=158.6

Q ss_pred             CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          98 GSKSHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      ..........|+|+|+ +++++..++.|..|+. +++. ..+..        +...+..++++++|+++++...++.|.+
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~--------~~~~~~gl~~d~dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLD--------ATAFTNGNAVDAQQRLVHCEHGRRAITR  111 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEE--------SCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeC--------CCCccceeeECCCCCEEEEECCCCEEEE
Confidence            3455678999999998 5667778899999997 4542 22221        2356899999999986666556678999


Q ss_pred             EEcCCCeEeEEeec---ccCCCeEEEEEccCCCEEEE----EEC-------------CCeEEEEeCCCCceEEEeecccc
Q psy8448         177 WKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILT----ASF-------------DTYVRIHGLKSGKMLKEFRGHSS  236 (482)
Q Consensus       177 wd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~  236 (482)
                      |+.. ++.......   .....+..+++.++|...++    |..             .+.|..+|..+++.....  ...
T Consensus       112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~  188 (305)
T 3dr2_A          112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD  188 (305)
T ss_dssp             ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred             ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence            9975 543222211   11234678999999987775    332             356888888777654433  344


Q ss_pred             ceeEEEEcCCCCEEEEEeCC------CcEEEEECCCCcee--eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEE
Q psy8448         237 FVNDITFTADGHSVLSASSD------GTVKMWNLKTTECT--STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIM  308 (482)
Q Consensus       237 ~i~~l~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~  308 (482)
                      ....++|+|+++.|+.+...      +.|.+|++..+...  ..+..  ........+++.++| .++ +++. +.|.+|
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~--~~~~~pdgi~~d~~G-~lw-v~~~-~gv~~~  263 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS--VPDGLPDGFCVDRGG-WLW-SSSG-TGVCVF  263 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC--CSSSCCCSEEECTTS-CEE-ECCS-SEEEEE
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE--CCCCCCCeEEECCCC-CEE-EecC-CcEEEE
Confidence            57889999999988877665      68999998765411  11111  123345678899998 544 4444 459999


Q ss_pred             EcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         309 NMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       309 d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +.+++.+..+...   . .+.+++|+++++.|+.++.++..+
T Consensus       264 ~~~g~~~~~~~~~---~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          264 DSDGQLLGHIPTP---G-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             CTTSCEEEEEECS---S-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CCCCCEEEEEECC---C-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            9998888877654   2 478899999999999888875544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.55  E-value=5.8e-11  Score=106.48  Aligned_cols=235  Identities=11%  Similarity=0.047  Sum_probs=163.1

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      +...+.+++++++|+++++...++.|..+|.. ++.. .+....      ....+.++++.++++++++...++.|..+|
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  131 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ------PDSGPYGITEGLNGDIWFTQLNGDRIGKLT  131 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS------TTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC------CCCCCccceECCCCCEEEEccCCCeEEEEC
Confidence            34679999999999988877778899999987 5542 222111      125688999999998777776688999999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE-eeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE-FRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      .. ++............+..+++.++++..++...++.|..+|. +++.... ...+...+.+++++++++..++....+
T Consensus       132 ~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  209 (300)
T 2qc5_A          132 AD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN  209 (300)
T ss_dssp             TT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             CC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence            87 55443221224457899999999986666655789999998 5554432 223445688999999998777666677


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      .|.+||. +++......  ......+.++++.+++ .++++...++.|..++.++... .+.... ....+.+++++++|
T Consensus       210 ~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~-~~~~~~-~~~~~~~i~~~~~g  283 (300)
T 2qc5_A          210 KIGRITT-TGEISEYDI--PTPNARPHAITAGKNS-EIWFTEWGANQIGRITNDNTIQ-EYQLQT-ENAEPHGITFGKDG  283 (300)
T ss_dssp             EEEEECT-TCCEEEEEC--SSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTTSCEE-EEECCS-TTCCCCCEEECTTS
T ss_pred             EEEEEcC-CCcEEEEEC--CCCCCCceEEEECCCC-CEEEeccCCCeEEEECCCCcEE-EEECCc-cCCccceeEeCCCC
Confidence            8999998 444333211  1334567899999998 6666666778999999866543 332111 13457889999999


Q ss_pred             CEEEEEeCCcEEEE
Q psy8448         338 EWIYCVGEDMVLVV  351 (482)
Q Consensus       338 ~~l~~~~~dg~i~i  351 (482)
                      ++.++.. . .|..
T Consensus       284 ~l~v~~~-~-~i~~  295 (300)
T 2qc5_A          284 SVWFALK-C-KIGK  295 (300)
T ss_dssp             CEEEECS-S-EEEE
T ss_pred             CEEEEcc-C-ceEE
Confidence            8666544 4 6653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=3.5e-13  Score=123.05  Aligned_cols=173  Identities=13%  Similarity=0.090  Sum_probs=136.5

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----------EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ-----------CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI  219 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i  219 (482)
                      .+++.+++++...++++|+.+ .+.+|++.+..           ....  ..+.. |..++|  ++.+|+++ .++.|++
T Consensus        38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~--~~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE--KEIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE--EECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE--eeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            368999999999999999988 56669875433           1122  23556 999999  88999998 7899999


Q ss_pred             EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448         220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                      ||+++.........|...+.++.+.+.  .+++++.||.|.+||+.++....       ....|++++|+|+|   ++++
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG---~~vg  178 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ---LAVL  178 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE---EEEE
T ss_pred             EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc---eEEE
Confidence            999988776677778888888887754  38889999999999999877643       23479999999997   6789


Q ss_pred             eCCCeEEEEEcCCcE---EEEecC------CcccCcCEEEEEEcCCCCEEEE
Q psy8448         300 NKTNTVVIMNMQGQI---VRSLSS------GKREGGDFLCCTTSPRGEWIYC  342 (482)
Q Consensus       300 ~~d~~i~i~d~~~~~---~~~~~~------~~~~~~~v~~~~~~~~g~~l~~  342 (482)
                      ..||.+++|+..+..   ...+..      +..+...|.++.|.+++.++++
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            999999999987665   444521      1123678999999999999886

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.54  E-value=2e-12  Score=119.79  Aligned_cols=220  Identities=13%  Similarity=0.085  Sum_probs=145.7

Q ss_pred             CCCCEEEEEeC-C----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe----------CCCcE
Q psy8448         110 PDGQYLITGSV-D----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS----------QSGKV  174 (482)
Q Consensus       110 ~~~~~l~s~~~-d----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~----------~dg~i  174 (482)
                      ++++.+++... +    +.|.++|..+++.+..+....        .+  .++++||+++++++.          .++.|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--------~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V  151 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--------LP--HPVAAEDGSFFAQASTVFERIARGKRTDYV  151 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--------SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--------CC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence            46666655543 2    699999999999988877652        34  899999999888876          36789


Q ss_pred             EEEEcCCCeEeEEeecc------cCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCC
Q psy8448         175 KIWKIATGQCLRKLEKA------HSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD  246 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~  246 (482)
                      .++|..+++.+..+..+      .......++|+|||++++++..  ++.|.+.|+.+++.+.++.-...    ....|+
T Consensus       152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~  227 (426)
T 3c75_H          152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPA  227 (426)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEE
T ss_pred             EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccC
Confidence            99999999988877432      1123457899999999999874  57899999999999888764221    223343


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCceeeee-eccCCCccc-eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc-
Q psy8448         247 -GHSVLSASSDGTVKMWNLKTTECTSTF-KSLGASDIA-VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK-  322 (482)
Q Consensus       247 -~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~-v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-  322 (482)
                       .+.+++.+.||.+.+.+..+++..... ..+.....+ ...+.+.+++ ..++..+..+.+.+.|..+.......... 
T Consensus       228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~  306 (426)
T 3c75_H          228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEA  306 (426)
T ss_dssp             ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred             CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence             356677778888888888655543211 001111112 1245678888 45555567889999999554333222100 


Q ss_pred             ------c---cCcCEEEEEEcCCCCEEEEEe
Q psy8448         323 ------R---EGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       323 ------~---~~~~v~~~~~~~~g~~l~~~~  344 (482)
                            .   .......++++|+++.+++..
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~  337 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLV  337 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEe
Confidence                  0   001112368899988887764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.53  E-value=1.4e-12  Score=131.28  Aligned_cols=241  Identities=11%  Similarity=0.050  Sum_probs=162.4

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEe-----CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448          97 FGSKSHVECARFSPDGQYLITGS-----VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      .+|...+..++|||||++||.+.     ....|++||+.+++..... ..        ......++|+ |++.|+.++.+
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~--------~~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LK--------DVKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EE--------EEESCCCEEE-TTTEEEEEESS
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cC--------CceeccEEEe-CCCEEEEEEec
Confidence            35667899999999999998543     2357999999999864431 11        1113577899 99999999877


Q ss_pred             Cc-------------EEEEEcCCCeE--eEEee-cc-cCCCeEEEEEccCCCEEEEEEC----CCeEEEEeCCCCc-eEE
Q psy8448         172 GK-------------VKIWKIATGQC--LRKLE-KA-HSLGVTCIQFSRDNSQILTASF----DTYVRIHGLKSGK-MLK  229 (482)
Q Consensus       172 g~-------------i~iwd~~~~~~--~~~~~-~~-~~~~v~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~  229 (482)
                      ..             |++|++.++..  ...+. .. +......+.|+|+|++|+....    ++.|+++|+.++. ...
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence            43             99999877643  22221 22 3445788999999998865442    2489999998764 345


Q ss_pred             EeeccccceeEEEEcCCCCEEEEEeC----CCcEEEEECCCCce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC
Q psy8448         230 EFRGHSSFVNDITFTADGHSVLSASS----DGTVKMWNLKTTEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN  303 (482)
Q Consensus       230 ~~~~~~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  303 (482)
                      .+..+....... +++++..|+..+.    .+.|..+|+.++..  ...+.   .+...+.  .|++++..++++...++
T Consensus       275 ~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~--~~s~~g~~lv~~~~~~g  348 (693)
T 3iuj_A          275 TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL--TVHSGSGYLFAEYMVDA  348 (693)
T ss_dssp             EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--EEEEETTEEEEEEEETT
T ss_pred             EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--EEEEECCEEEEEEEECC
Confidence            555555555554 6666766665543    25799999988654  22333   3344444  78888844444555554


Q ss_pred             --eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC----cEEEEEeeh
Q psy8448         304 --TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED----MVLVVRLIQ  355 (482)
Q Consensus       304 --~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d----g~i~iw~~~  355 (482)
                        .|++|++.+.....+....  ...+..+.++++++.|+....+    +.++.|++.
T Consensus       349 ~~~l~~~d~~g~~~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~  404 (693)
T 3iuj_A          349 TARVEQFDYEGKRVREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK  404 (693)
T ss_dssp             EEEEEEECTTSCEEEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             eeEEEEEECCCCeeEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence              6888998877766665321  4457778888898877766555    788888764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=1.5e-11  Score=110.29  Aligned_cols=190  Identities=13%  Similarity=0.090  Sum_probs=125.3

Q ss_pred             cEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy8448         152 AVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       152 ~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  230 (482)
                      -..+..|+|++. ++++...++.|..||..+++. ..+  .....+.++++++++++ +++. ++.|.+||.++++....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~--~~~~~~~~i~~~~dG~l-~v~~-~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV--TMDAPVSSVALRQSGGY-VATI-GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE--ECSSCEEEEEEBTTSSE-EEEE-TTEEEEEETTTTEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE--eCCCceEEEEECCCCCE-EEEE-CCeEEEEECCCCcEEEE
Confidence            456788999654 555555788999999987765 333  24567999999999984 4444 66899999988765332


Q ss_pred             eec----cccceeEEEEcCCCCEEEEEeCC---------CcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEE
Q psy8448         231 FRG----HSSFVNDITFTADGHSVLSASSD---------GTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHF  296 (482)
Q Consensus       231 ~~~----~~~~i~~l~~~~~~~~l~~~~~d---------g~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l  296 (482)
                      ...    ....+..++++|+|+++++....         ..-.+|.+.. ++.....    ......+.++|+|++..++
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~----~~~~~pngi~~spdg~~ly  164 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF----DQVDISNGLDWSLDHKIFY  164 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE----EEESBEEEEEECTTSCEEE
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe----eccccccceEEcCCCCEEE
Confidence            221    12457899999999966654321         2234555443 3332222    2233467899999995566


Q ss_pred             EEEeCCCeEEEEEcC---CcEE--EEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         297 VVCNKTNTVVIMNMQ---GQIV--RSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       297 ~~~~~d~~i~i~d~~---~~~~--~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ++.+.++.|..|++.   +...  ..+............++++++|++.++...++.|.
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~  223 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVI  223 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEE
T ss_pred             EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEE
Confidence            677778999999862   3321  12221111234577899999998888887888888

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.52  E-value=5.5e-12  Score=114.68  Aligned_cols=263  Identities=14%  Similarity=0.202  Sum_probs=172.1

Q ss_pred             cceeeecCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC
Q psy8448          91 LSKQIKFGSKSHVECARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR  160 (482)
Q Consensus        91 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~  160 (482)
                      ....+..|.. + . ++++|||++|++++          .++.|.+||..+++....+........ ........++++|
T Consensus        71 v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~-~~g~~P~~~a~sp  146 (386)
T 3sjl_D           71 VIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF-LVGTYPWMTSLTP  146 (386)
T ss_dssp             EEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC-CBSCCGGGEEECT
T ss_pred             EEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc-ccCCCCceEEEcC
Confidence            3344544443 3 4 99999999987765          367899999999998877754320000 0012355789999


Q ss_pred             CCCEEEEEeC--CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCC-CceEEEeecc---
Q psy8448         161 DSEMLASGSQ--SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS-GKMLKEFRGH---  234 (482)
Q Consensus       161 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~---  234 (482)
                      ||++++++..  ++.|.++|+.+++.+..+....   . ...+......+++.+.||.+.+.++.+ ++.......+   
T Consensus       147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~  222 (386)
T 3sjl_D          147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP  222 (386)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC
T ss_pred             CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC---c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc
Confidence            9999998864  6899999999999998884221   1 223333456777888899999999876 5543221111   


Q ss_pred             -cccee-EEEEc-CCCCEEEEEeCCCcEEEEECCCCc--eeeeeecc-------CCCccceeEEEEcCCCCCEEEEEeC-
Q psy8448         235 -SSFVN-DITFT-ADGHSVLSASSDGTVKMWNLKTTE--CTSTFKSL-------GASDIAVNSIHLLPKNTEHFVVCNK-  301 (482)
Q Consensus       235 -~~~i~-~l~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~-------~~~~~~v~~i~~~~~~~~~l~~~~~-  301 (482)
                       ..++. ...|. ++|++++ .+.+|.|.+.|+.+..  ....+...       .-.......+++++++..++++... 
T Consensus       223 ~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~  301 (386)
T 3sjl_D          223 EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR  301 (386)
T ss_dssp             TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence             12221 24564 5775444 6668999999997654  22222200       0012233457778888555554331 


Q ss_pred             --------CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCC-EEEEEe-CCcEEEEEeehhhhhhhcccccceee
Q psy8448         302 --------TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVG-EDMVLVVRLIQQYLKESNLMKTLQCL  370 (482)
Q Consensus       302 --------d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~  370 (482)
                              .+.|.++|. +++.+..+...    ..+..+++++|++ +|++.. .++.|.                  ++
T Consensus       302 ~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~Vs------------------Vi  359 (386)
T 3sjl_D          302 DEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLY------------------IH  359 (386)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEE------------------EE
T ss_pred             cccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEE------------------EE
Confidence                    257999999 68888887753    3677999999997 677654 589999                  77


Q ss_pred             eecccceeeccccc
Q psy8448         371 QEETGVSLNTVDSV  384 (482)
Q Consensus       371 ~~~~~~~~~~~~~~  384 (482)
                      |..+++.+.++...
T Consensus       360 D~~t~k~~~~i~~~  373 (386)
T 3sjl_D          360 DAESGEELRSVNQL  373 (386)
T ss_dssp             ETTTCCEEEEECCC
T ss_pred             ECCCCcEEEEecCC
Confidence            88888777666543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.45  E-value=2e-10  Score=104.26  Aligned_cols=184  Identities=13%  Similarity=0.076  Sum_probs=122.1

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe
Q psy8448         153 VMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF  231 (482)
Q Consensus       153 i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  231 (482)
                      ..+..|+|++. .+++...++.|..||..+++.. .+.  ....+.+++++++++++++ +. ..|.+||.++++.....
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~l~v~-~~-~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCeEEEE-EC-CCEEEEECCCCcEEEEe
Confidence            45678999754 5555557789999999877643 332  3467999999999876665 44 45999999888754322


Q ss_pred             ec----cccceeEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         232 RG----HSSFVNDITFTADGHSVLSASS------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       232 ~~----~~~~i~~l~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      ..    ....+.+++++|+|+++++...      .+.|..++  +++... +.   ........++|+|++..++++.+.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~---~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF---ADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE---EEESSEEEEEECTTSCEEEEEETT
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee---CCCcccCCeEEcCCCCEEEEEECC
Confidence            21    1245889999999997665432      24566666  444332 22   222346789999998445566666


Q ss_pred             CCeEEEEEcC---C-c-----EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         302 TNTVVIMNMQ---G-Q-----IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       302 d~~i~i~d~~---~-~-----~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ++.|.+|+..   + .     .+..+..   .......++++++|.+.++...++.|.
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~---~~~~p~gi~~d~~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTG---IKGGMDGSVCDAEGHIWNARWGEGAVD  254 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTT---SSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCC---CCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence            7899999974   4 2     1222221   134567899999998877776778888

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=3.1e-11  Score=110.49  Aligned_cols=243  Identities=10%  Similarity=0.062  Sum_probs=158.6

Q ss_pred             CcEEEEEEcCCCCEEEEEe--CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-----CCc
Q psy8448         101 SHVECARFSPDGQYLITGS--VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-----SGK  173 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-----dg~  173 (482)
                      ..+..++++|+|+++++..  .++.++||.+.+++.. .+.... .....|-..+..+++.++++++++-..     ++.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~-~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQS-GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCC-SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcc-cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            6789999999999988864  2343556665555432 111100 111234568999999999876655433     578


Q ss_pred             EEEEEcCCCeEeEEeecc-----cCCCeEEEEEccCCCEEEEEE----CCCeEEEEeCCCCceEEEeeccc---------
Q psy8448         174 VKIWKIATGQCLRKLEKA-----HSLGVTCIQFSRDNSQILTAS----FDTYVRIHGLKSGKMLKEFRGHS---------  235 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~---------  235 (482)
                      |.+||+.+++.+..+...     +...+..+++++++..++.+.    .++.|.+||+.+++....+.+|.         
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            999999999877666321     123468999998655554443    57899999998887665553321         


Q ss_pred             --------------------cceeEEEEcCCCCEEEEEeCCC-cEEEEECC---CCce-----eeeeeccCCCccceeEE
Q psy8448         236 --------------------SFVNDITFTADGHSVLSASSDG-TVKMWNLK---TTEC-----TSTFKSLGASDIAVNSI  286 (482)
Q Consensus       236 --------------------~~i~~l~~~~~~~~l~~~~~dg-~i~i~d~~---~~~~-----~~~~~~~~~~~~~v~~i  286 (482)
                                          ..+..|+|+|+++.|+.+...+ .+..++..   .+..     ...+... ++......+
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgi  253 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGI  253 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCE
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceE
Confidence                                2357899999999888887766 44444432   1110     0001100 122345679


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE
Q psy8448         287 HLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL  349 (482)
Q Consensus       287 ~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i  349 (482)
                      +++++| .++++...++.|.+||. +++...... .. ......++++.++|.++++.+..+.+
T Consensus       254 a~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~-~~-~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          254 SIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVT-DE-KLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEE-CG-GGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             EECCCC-CEEEEccCCCeEEEEECCCCCEEEEEE-CC-ceecCCeeEECCCCcEEEEeCccccc
Confidence            999998 88888888999999999 776433322 21 24467899999999888877655444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.44  E-value=1.9e-11  Score=113.28  Aligned_cols=261  Identities=14%  Similarity=0.172  Sum_probs=173.7

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEc
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS  159 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  159 (482)
                      +...++..+. .+  .+.++|||++|+++.          .++.|.++|..+++....+......... .......+.++
T Consensus       110 ~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~-~g~~P~~~~~s  185 (426)
T 3c75_H          110 RILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL-VGTYQWMNALT  185 (426)
T ss_dssp             EEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC-BSCCGGGSEEC
T ss_pred             EEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc-cCCCcceEEEc
Confidence            3344454454 34  899999999988775          3678999999999988776643110000 01234577899


Q ss_pred             CCCCEEEEEeC--CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCCCCceEEE----ee
Q psy8448         160 RDSEMLASGSQ--SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLKSGKMLKE----FR  232 (482)
Q Consensus       160 ~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~----~~  232 (482)
                      |||++++++..  ++.|.+.|+.+++.+..+..+.   .  ....|++ ..+++.+.||.+.+.+..+++....    +.
T Consensus       186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~  260 (426)
T 3c75_H          186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH  260 (426)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred             CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence            99999999874  5789999999999988874321   1  2334433 5566677788888888866655432    11


Q ss_pred             ccccce-eEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--eeeeccC-------CCccceeEEEEcCCCCCEEEEEe--
Q psy8448         233 GHSSFV-NDITFTADGHSVLSASSDGTVKMWNLKTTECT--STFKSLG-------ASDIAVNSIHLLPKNTEHFVVCN--  300 (482)
Q Consensus       233 ~~~~~i-~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~-------~~~~~v~~i~~~~~~~~~l~~~~--  300 (482)
                      ....++ ..+.+.+++..++..+..+.|.+.|+......  ..+....       ........++++|++..++++..  
T Consensus       261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~  340 (426)
T 3c75_H          261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR  340 (426)
T ss_dssp             CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred             cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence            111221 24567899888888888899999998765421  1111100       00112223789999855555543  


Q ss_pred             -------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCC-EEEEEe-CCcEEEEEeehhhhhhhcccccceee
Q psy8448         301 -------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGE-WIYCVG-EDMVLVVRLIQQYLKESNLMKTLQCL  370 (482)
Q Consensus       301 -------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~  370 (482)
                             .++.|.++|. +.+.+..+...    .....++|+|||+ ++++.. .++.|.                  ++
T Consensus       341 ~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~~Vs------------------VI  398 (426)
T 3c75_H          341 DEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQTLH------------------IY  398 (426)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEE------------------EE
T ss_pred             ccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCCeEE------------------EE
Confidence                   1357999999 68888888653    3468899999999 888888 589999                  67


Q ss_pred             eecccceeecc
Q psy8448         371 QEETGVSLNTV  381 (482)
Q Consensus       371 ~~~~~~~~~~~  381 (482)
                      |..+++.+.++
T Consensus       399 D~~t~kvv~tI  409 (426)
T 3c75_H          399 DAATGEELRSV  409 (426)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            77777655554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.40  E-value=2.1e-10  Score=108.78  Aligned_cols=232  Identities=12%  Similarity=0.095  Sum_probs=160.1

Q ss_pred             EEEEeCCCeEEEEecCCCceeecccccccc---------------------------------ccccccccEEEEEE---
Q psy8448         115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQD---------------------------------NFMLMEEAVMSLAY---  158 (482)
Q Consensus       115 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------------------------~~~~h~~~i~~l~~---  158 (482)
                      +.+|+..|.|+|+-+.+++.+..+..-...                                 .+.--...-..+++   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            467788899999988888876655321110                                 00000111233333   


Q ss_pred             cCCCCEEEEEeC-CCcEEEEEcCCCeEeEEeecccCCCeEEEEE-c-cCCCEEEEEE------------------CCCeE
Q psy8448         159 SRDSEMLASGSQ-SGKVKIWKIATGQCLRKLEKAHSLGVTCIQF-S-RDNSQILTAS------------------FDTYV  217 (482)
Q Consensus       159 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~-~-~~~~~l~~~~------------------~dg~i  217 (482)
                      .+||++++.+.. ++.|.+.|+.+.+....+..........+++ . |+++++++++                  .++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            237888888765 4579999999999888664445566888898 5 8999999885                  24589


Q ss_pred             EEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q psy8448         218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG--------------------------------------TV  259 (482)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg--------------------------------------~i  259 (482)
                      .+.|.++.+...++.-.. ....++++|+|+++++.+.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999999888877433 467889999999999888543                                      36


Q ss_pred             EEEECCC--Cce-eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-------------EEEEecCCcc
Q psy8448         260 KMWNLKT--TEC-TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ-------------IVRSLSSGKR  323 (482)
Q Consensus       260 ~i~d~~~--~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------~~~~~~~~~~  323 (482)
                      .+.|.++  ++. +..+.    -.....++.++|||..+++++..+++|.++|+...             .......   
T Consensus       257 ~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v---  329 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL---  329 (595)
T ss_dssp             EEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC---
T ss_pred             EEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC---
Confidence            7777776  433 33442    12345689999999556666667899999999532             3333333   


Q ss_pred             cCcCEEEEEEcCCCCEEE-EEeCCcEEEEEeehh
Q psy8448         324 EGGDFLCCTTSPRGEWIY-CVGEDMVLVVRLIQQ  356 (482)
Q Consensus       324 ~~~~v~~~~~~~~g~~l~-~~~~dg~i~iw~~~~  356 (482)
                       ......++|+|+| +++ +.--|+.|.+|++..
T Consensus       330 -G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 -GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             -CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             -CCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence             3456899999999 555 566799999777653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.38  E-value=2.1e-10  Score=103.18  Aligned_cols=186  Identities=10%  Similarity=0.011  Sum_probs=119.9

Q ss_pred             ccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         151 EAVMSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       151 ~~i~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      .......|+|+++ ++++...++.|..|+. +++ ...+ ......+..++++++|+++++...++.|.+|+.. ++...
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~  120 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL  120 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence            4567889999998 5566667889999997 454 3334 3355678999999999866655556889999986 55322


Q ss_pred             Eeec----cccceeEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceeeeeeccCCCccceeEEEE
Q psy8448         230 EFRG----HSSFVNDITFTADGHSVLS----ASS-------------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHL  288 (482)
Q Consensus       230 ~~~~----~~~~i~~l~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  288 (482)
                      ....    ....+..++++|+|+++++    |..             .+.|..||..+++.....     .......++|
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-----~~~~p~gl~~  195 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-----DLDHPNGLAF  195 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-----EESSEEEEEE
T ss_pred             EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-----cCCCCcceEE
Confidence            2111    1134678999999997776    332             246778887666543322     1224578999


Q ss_pred             cCCCCCEEEEEeCC------CeEEEEEcCCcEEE---EecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         289 LPKNTEHFVVCNKT------NTVVIMNMQGQIVR---SLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       289 ~~~~~~~l~~~~~d------~~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +|++ ..++++...      +.|.+|++.+..+.   .+...  .......++++++|++. +++.+| |.
T Consensus       196 spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~lw-v~~~~g-v~  261 (305)
T 3dr2_A          196 SPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWLW-SSSGTG-VC  261 (305)
T ss_dssp             CTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCEE-ECCSSE-EE
T ss_pred             cCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCEE-EecCCc-EE
Confidence            9998 555555544      78999998432221   11111  12334568899999844 444444 66

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.37  E-value=3e-10  Score=97.76  Aligned_cols=208  Identities=10%  Similarity=0.035  Sum_probs=148.3

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGSV--DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS  167 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~  167 (482)
                      +....+..+.......+.|+|++.+.++.+.  ++.|++.|+.+++....+.....       .....+++.  ++.|..
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-------~fgeGi~~~--g~~lyv   80 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-------YFGEGLTLL--NEKLYQ   80 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-------CCEEEEEEE--TTEEEE
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-------cceEEEEEe--CCEEEE
Confidence            4444554444445789999998755555443  57999999999998887664321       122345554  445555


Q ss_pred             Ee-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccc-----cceeEE
Q psy8448         168 GS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS-----SFVNDI  241 (482)
Q Consensus       168 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~l  241 (482)
                      +. .++.+.++|..+.+.+..+..+...   ...++++++.++++..++.|.++|.++.+.+..+.-..     ..++.+
T Consensus        81 ~t~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel  157 (266)
T 2iwa_A           81 VVWLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL  157 (266)
T ss_dssp             EETTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence            54 6789999999999999888543122   23355688888888788999999999998887776321     136688


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCC----------CccceeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q psy8448         242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGA----------SDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM  310 (482)
Q Consensus       242 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~  310 (482)
                      .|. ++...+....++.|.+.|..+++.+..+.....          .....+.|+++|++..+++++...+.+...++
T Consensus       158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            888 675555555678999999999998888863210          11356899999999778888888899998887

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.37  E-value=3.3e-11  Score=121.15  Aligned_cols=187  Identities=17%  Similarity=0.188  Sum_probs=122.9

Q ss_pred             cccEEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC---------
Q psy8448         150 EEAVMSLAYSRDSEMLASGS-----QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT---------  215 (482)
Q Consensus       150 ~~~i~~l~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---------  215 (482)
                      ...+..++|||||++|+.+.     ....|++||+.+++.+....  .......++|+ |++.|+.++.+.         
T Consensus       128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            45688899999999988643     22579999999998654321  11113567899 999999988774         


Q ss_pred             ----eEEEEeCCCCce----EEEeec-cccceeEEEEcCCCCEEEEEeC----CCcEEEEECCCCc-eeeeeeccCCCcc
Q psy8448         216 ----YVRIHGLKSGKM----LKEFRG-HSSFVNDITFTADGHSVLSASS----DGTVKMWNLKTTE-CTSTFKSLGASDI  281 (482)
Q Consensus       216 ----~i~i~d~~~~~~----~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~~  281 (482)
                          .|++|++.++..    +..... +......+.|+|||++|+....    ...|.++|+.++. ....+.   .+..
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~---~~~~  281 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ---GDLD  281 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE---CSSS
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe---CCCC
Confidence                399999987653    222233 4445788999999998865443    2479999998764 233333   3333


Q ss_pred             ceeEEEEcCCCCCEEEEEeCC---CeEEEEEcCC-cE--EEEecCCcccCcCEEEEEEcCCCCEEEEEeC-CcE
Q psy8448         282 AVNSIHLLPKNTEHFVVCNKT---NTVVIMNMQG-QI--VRSLSSGKREGGDFLCCTTSPRGEWIYCVGE-DMV  348 (482)
Q Consensus       282 ~v~~i~~~~~~~~~l~~~~~d---~~i~i~d~~~-~~--~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~-dg~  348 (482)
                      ..... +++++..+++.+..+   +.|..+++.+ ..  ...+..+   ...+.  .|++++++|+.... ++.
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~--~~s~~g~~lv~~~~~~g~  349 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE---RQQVL--TVHSGSGYLFAEYMVDAT  349 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC---CSSCE--EEEEETTEEEEEEEETTE
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC---CCCEE--EEEEECCEEEEEEEECCe
Confidence            34443 667775666666554   5788999853 22  2344433   22333  88889988876554 553

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.33  E-value=1.2e-09  Score=99.91  Aligned_cols=233  Identities=11%  Similarity=0.104  Sum_probs=152.7

Q ss_pred             CCCCEEEE-EeCCCeEEEEecCCC----ceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q psy8448         110 PDGQYLIT-GSVDGFIEVWNFTTG----KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS------GKVKIWK  178 (482)
Q Consensus       110 ~~~~~l~s-~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d------g~i~iwd  178 (482)
                      +++++|+. |..+++|+|+|+.+.    +....+.......-.+ ......+...|+| .++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            78888765 457789999999755    4444332110000000 1245667888999 66666555      7899999


Q ss_pred             cCCCeEeEEeecccCC--CeEEEEEccCCCEEEEEE-------------------CCCeEEEEeCCCCceEEEeecc--c
Q psy8448         179 IATGQCLRKLEKAHSL--GVTCIQFSRDNSQILTAS-------------------FDTYVRIHGLKSGKMLKEFRGH--S  235 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~--~  235 (482)
                      ..+.+.+.++..+...  --..+.|+|+++.+++..                   .+..|.+||+.+++.+.++...  .
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9999999888533221  133578899999888874                   3689999999998888877642  2


Q ss_pred             cceeEEEE--cCCCCEEEEEe------CCCcEEEEECCCCce--eeee--ec--cCC-----------CccceeEEEEcC
Q psy8448         236 SFVNDITF--TADGHSVLSAS------SDGTVKMWNLKTTEC--TSTF--KS--LGA-----------SDIAVNSIHLLP  290 (482)
Q Consensus       236 ~~i~~l~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~~--~~--~~~-----------~~~~v~~i~~~~  290 (482)
                      .....+.|  +|+++++++++      .+++|.+|..+.++.  ...+  ..  ...           .......|.++|
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            34556666  99999888776      466887776654421  1111  00  000           023468899999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcC----CcEEEEecCCcc-----------cCcCEEEEEEcCCCCEEEEEe
Q psy8448         291 KNTEHFVVCNKTNTVVIMNMQ----GQIVRSLSSGKR-----------EGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       291 ~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~-----------~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      ++..++++.-..+.|.+||+.    .+.+..+..+..           ..+....++++|||++|+++.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            995555556667999999983    244544443200           011357799999999999887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.31  E-value=1.2e-09  Score=99.93  Aligned_cols=197  Identities=9%  Similarity=0.042  Sum_probs=131.5

Q ss_pred             EEc--CCCCEEEEEe-CCCcEEEEEcCCC----eEeEEee------cccCCCeEEEEEccCCCEEEEEECC------CeE
Q psy8448         157 AYS--RDSEMLASGS-QSGKVKIWKIATG----QCLRKLE------KAHSLGVTCIQFSRDNSQILTASFD------TYV  217 (482)
Q Consensus       157 ~~~--~~~~~l~~~~-~dg~i~iwd~~~~----~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~~~d------g~i  217 (482)
                      .++  +++++|+..+ .++.|.++|+.+.    +....++      +.....-..+...|+| .++++..+      |.|
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            346  7788777755 6789999998755    5555552      0011235667888999 66666555      789


Q ss_pred             EEEeCCCCceEEEeecccc---ceeEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCceeeeeec
Q psy8448         218 RIHGLKSGKMLKEFRGHSS---FVNDITFTADGHSVLSAS-------------------SDGTVKMWNLKTTECTSTFKS  275 (482)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~---~i~~l~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~  275 (482)
                      .++|.++.+.+.++.....   .-..+.|+|+++.+++..                   .+.+|.+||+.+++.+.++..
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            9999999999988863222   234588899999888874                   368899999999887777763


Q ss_pred             cCCCccceeEEEE--cCCCCCEEEEEe-----CCCeEEEEEcCCcEE---EEe--cCCc----c---c------CcCEEE
Q psy8448         276 LGASDIAVNSIHL--LPKNTEHFVVCN-----KTNTVVIMNMQGQIV---RSL--SSGK----R---E------GGDFLC  330 (482)
Q Consensus       276 ~~~~~~~v~~i~~--~~~~~~~l~~~~-----~d~~i~i~d~~~~~~---~~~--~~~~----~---~------~~~v~~  330 (482)
                      - ........+.|  +|++...++++-     .+++|.+|..++...   ..+  ....    .   .      ......
T Consensus       247 g-~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          247 G-EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             C-TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             C-CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            1 12233445655  999955555555     677888877632211   111  1100    0   0      134678


Q ss_pred             EEEcCCCCEEEEEeC-CcEEEEEeeh
Q psy8448         331 CTTSPRGEWIYCVGE-DMVLVVRLIQ  355 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~-dg~i~iw~~~  355 (482)
                      +.+++||++|+++.. .+.|.+|++.
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEec
Confidence            999999999998776 6889966653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.30  E-value=1.7e-10  Score=105.03  Aligned_cols=220  Identities=16%  Similarity=0.098  Sum_probs=145.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ...+.++...+++.+ ..++.+  |..+|. +++....+....        .......+.  +..+..++.++.+..+|.
T Consensus        59 ~~~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~~~~~~--------~~~~~~~~~--~~~l~v~t~~~~l~~~d~  124 (330)
T 3hxj_A           59 EIIECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWRFDTKK--------AIVSDFTIF--EDILYVTSMDGHLYAINT  124 (330)
T ss_dssp             GEEEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGGSCC-------------CCEEEE--TTEEEEECTTSEEEEECT
T ss_pred             CCcccceEEecCCcE-EEecCc--EEEECC-CCcEEEEEECCC--------CcccCceEE--CCEEEEEecCCEEEEEcC
Confidence            344577777777754 445444  888885 565544333221        111222222  456788888999999998


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcE
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV  259 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i  259 (482)
                      . ++...... .....+.++...+++. +.+++.++.|..+|.. ++....+......+.++...+++... .++  +.|
T Consensus       125 ~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l  197 (330)
T 3hxj_A          125 D-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKV  197 (330)
T ss_dssp             T-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSE
T ss_pred             C-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEE
Confidence            8 77666653 3444456667766665 6778888999999998 88777776666677788888888744 444  779


Q ss_pred             EEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCE
Q psy8448         260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEW  339 (482)
Q Consensus       260 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~  339 (482)
                      ..+| .+++....+.   .....+.++...+++  .+.+++.++.+..++.+++.+..+...   ...+..+.+.+++ .
T Consensus       198 ~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g-~  267 (330)
T 3hxj_A          198 YAIN-PDGTEKWNFY---AGYWTVTRPAISEDG--TIYVTSLDGHLYAINPDGTEKWRFKTG---KRIESSPVIGNTD-T  267 (330)
T ss_dssp             EEEC-TTSCEEEEEC---CSSCCCSCCEECTTS--CEEEEETTTEEEEECTTSCEEEEEECS---SCCCSCCEECTTS-C
T ss_pred             EEEC-CCCcEEEEEc---cCCcceeceEECCCC--eEEEEcCCCeEEEECCCCCEeEEeeCC---CCccccceEcCCC-e
Confidence            9999 7777665554   334567788888775  466677788888888877777666543   2223345555555 5


Q ss_pred             EEEEeCCcEEE
Q psy8448         340 IYCVGEDMVLV  350 (482)
Q Consensus       340 l~~~~~dg~i~  350 (482)
                      |..++.+|.++
T Consensus       268 l~v~t~~ggl~  278 (330)
T 3hxj_A          268 IYFGSYDGHLY  278 (330)
T ss_dssp             EEEECTTCEEE
T ss_pred             EEEecCCCCEE
Confidence            66788888888

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.28  E-value=1.6e-09  Score=108.20  Aligned_cols=241  Identities=12%  Similarity=0.144  Sum_probs=156.1

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccc-cccc-cccccccEEEEEEcCCCCEEEEEe------CCCcEEEEEcCCCe
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQ-AQDN-FMLMEEAVMSLAYSRDSEMLASGS------QSGKVKIWKIATGQ  183 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~-~~~h~~~i~~l~~~~~~~~l~~~~------~dg~i~iwd~~~~~  183 (482)
                      +..++.++.|+.|..+|..+|+.+-..... .... ......++.     .++ .+++++      .+|.|..||..+|+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~  194 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAETGK  194 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCCCc
Confidence            567888889999999999999987665442 1100 000011111     144 444443      36899999999999


Q ss_pred             EeEEeecccC------------------------------CCeEEEEEccCCCEEEEEECCCe-----------------
Q psy8448         184 CLRKLEKAHS------------------------------LGVTCIQFSRDNSQILTASFDTY-----------------  216 (482)
Q Consensus       184 ~~~~~~~~~~------------------------------~~v~~i~~~~~~~~l~~~~~dg~-----------------  216 (482)
                      .+..+.....                              .....+++.|++..++++..++.                 
T Consensus       195 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~  274 (689)
T 1yiq_A          195 EAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFL  274 (689)
T ss_dssp             EEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred             EEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            9887742110                              01125788888889999887764                 


Q ss_pred             --EEEEeCCCCceEEEeec--cc-------cceeEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeeeeeccC-----
Q psy8448         217 --VRIHGLKSGKMLKEFRG--HS-------SFVNDITFTADGH---SVLSASSDGTVKMWNLKTTECTSTFKSLG-----  277 (482)
Q Consensus       217 --i~i~d~~~~~~~~~~~~--~~-------~~i~~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  277 (482)
                        |..+|.++++.+..+..  |.       .++.......+|+   .++.++.+|.++++|.++++.+.......     
T Consensus       275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~  354 (689)
T 1yiq_A          275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK  354 (689)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence              99999999999887764  21       1122222223554   78889999999999999999874432110     


Q ss_pred             --------------------CC-----------ccceeEEEEcCCCCCEEEEEeC-------------------------
Q psy8448         278 --------------------AS-----------DIAVNSIHLLPKNTEHFVVCNK-------------------------  301 (482)
Q Consensus       278 --------------------~~-----------~~~v~~i~~~~~~~~~l~~~~~-------------------------  301 (482)
                                          ..           ......++++|+. .++++...                         
T Consensus       355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g  433 (689)
T 1yiq_A          355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG  433 (689)
T ss_dssp             EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred             ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeeccccccccccccccccC
Confidence                                00           0011236788877 56665421                         


Q ss_pred             --------------------CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhh
Q psy8448         302 --------------------TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKE  360 (482)
Q Consensus       302 --------------------d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~  360 (482)
                                          +|.|..||+ +++.+-.+..+.    +.....+...+.+++.|+.||.++          
T Consensus       434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~gt~dg~l~----------  499 (689)
T 1yiq_A          434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT----IFNGGTLSTAGNLVFEGSADGRVI----------  499 (689)
T ss_dssp             SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEE----------
T ss_pred             ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC----CccCccceECCCEEEEECCCCcEE----------
Confidence                                377999999 688777665432    223335556788999999999999          


Q ss_pred             hcccccceeeeecccceeecc
Q psy8448         361 SNLMKTLQCLQEETGVSLNTV  381 (482)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~  381 (482)
                              .||..+|+.+...
T Consensus       500 --------a~D~~tG~~lw~~  512 (689)
T 1yiq_A          500 --------AYAADTGEKLWEQ  512 (689)
T ss_dssp             --------EEETTTCCEEEEE
T ss_pred             --------EEECCCCccceee
Confidence                    7777777544433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.28  E-value=5.4e-09  Score=96.99  Aligned_cols=226  Identities=12%  Similarity=0.097  Sum_probs=142.2

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM-EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      +..+++++.++.|..+|..+++..-............. ...+.+. ...++..+++++.++.|..+|..+++.+.....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            56788888889999999999987765544321000000 1122211 122456788888999999999999998877632


Q ss_pred             ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccce-----eEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy8448         191 AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFV-----NDITFTADGHSVLSASSDGTVKMWNLK  265 (482)
Q Consensus       191 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-----~~l~~~~~~~~l~~~~~dg~i~i~d~~  265 (482)
                      . .........  .+..+++++.++.|..+|.++++.+..+.......     ......  +..+++++.++.|..+|..
T Consensus       132 ~-~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          132 A-GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             S-SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred             C-CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence            2 211111122  24578888899999999999999887766432211     112222  4567888889999999999


Q ss_pred             CCceeeeeeccCCCcc----c---e-eEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCC
Q psy8448         266 TTECTSTFKSLGASDI----A---V-NSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR  336 (482)
Q Consensus       266 ~~~~~~~~~~~~~~~~----~---v-~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~  336 (482)
                      +++.............    .   + .....  .+ ..+++++.++.+..+|. +|+.+......     ....+..  +
T Consensus       207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----~~~~~~~--~  276 (376)
T 3q7m_A          207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VN-GVVFALAYNGNLTALDLRSGQIMWKRELG-----SVNDFIV--D  276 (376)
T ss_dssp             TCCEEEEEECCC-----------CCCCCCEE--ET-TEEEEECTTSCEEEEETTTCCEEEEECCC-----CEEEEEE--E
T ss_pred             CCcEEEEEecccCCCCcccccccccCCCcEE--EC-CEEEEEecCcEEEEEECCCCcEEeeccCC-----CCCCceE--E
Confidence            9988766642111000    0   0 01111  12 56778888999999999 67777665532     2334444  4


Q ss_pred             CCEEEEEeCCcEEEEEe
Q psy8448         337 GEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       337 g~~l~~~~~dg~i~iw~  353 (482)
                      +..|+.++.++.++.++
T Consensus       277 ~~~l~~~~~~g~l~~~d  293 (376)
T 3q7m_A          277 GNRIYLVDQNDRVMALT  293 (376)
T ss_dssp             TTEEEEEETTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEE
Confidence            67888889999999444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.25  E-value=1.7e-09  Score=91.79  Aligned_cols=197  Identities=13%  Similarity=0.171  Sum_probs=135.5

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDG--FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS  167 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~  167 (482)
                      +..+........-...+.|+ ++.++.+.+.+|  .|+++|+.+++....+....         ........++++.|..
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---------~~FgeGit~~g~~ly~  101 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---------RYFGEGISDWKDKIVG  101 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---------TCCEEEEEEETTEEEE
T ss_pred             EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---------ccceeEEEEeCCEEEE
Confidence            44444444444556889998 676667776665  89999999999988776542         2222222233555555


Q ss_pred             Ee-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc--c---cceeEE
Q psy8448         168 GS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH--S---SFVNDI  241 (482)
Q Consensus       168 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~i~~l  241 (482)
                      .. .++.+.++|..+.+.+.++.....    ...+.++++.|+.+..++.|.++|..+.+.+..+.-.  .   ..++.+
T Consensus       102 ltw~~~~v~v~D~~t~~~~~ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL  177 (262)
T 3nol_A          102 LTWKNGLGFVWNIRNLRQVRSFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL  177 (262)
T ss_dssp             EESSSSEEEEEETTTCCEEEEEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred             EEeeCCEEEEEECccCcEEEEEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence            54 688999999999999998854321    1233457777887777889999999999988876532  2   234567


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC---------CCccceeEEEEcCCCCCEEEEEeC
Q psy8448         242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG---------ASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       242 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      .|. +|+..+..-.+..|.+.|.++++.+..+....         ....-.+.|+++|++..++++|-.
T Consensus       178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            776 67655555568899999999999888876421         112356899999998555555543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.25  E-value=6e-10  Score=101.58  Aligned_cols=224  Identities=11%  Similarity=0.038  Sum_probs=142.6

Q ss_pred             eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEeEEeeccc
Q psy8448         123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS----------QSGKVKIWKIATGQCLRKLEKAH  192 (482)
Q Consensus       123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~  192 (482)
                      +|.+.|..+++.+.++....        .+  .+.++|++++++++.          .++.|.+||+.+++.+..+..+.
T Consensus        47 ~vsvID~~t~~v~~~i~vG~--------~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~  116 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF--------LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD  116 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT--------TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred             eEEEEECCCCeEEEEEeCCC--------CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence            88999999999988877652        34  799999999999886          36789999999999998884321


Q ss_pred             ------CCCeEEEEEccCCCEEEEEEC--CCeEEE--EeCCCCceEEEeeccc------------------cceeEEEE-
Q psy8448         193 ------SLGVTCIQFSRDNSQILTASF--DTYVRI--HGLKSGKMLKEFRGHS------------------SFVNDITF-  243 (482)
Q Consensus       193 ------~~~v~~i~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~------------------~~i~~l~~-  243 (482)
                            ......++++|||++++++..  +..|.+  +|+.+   +..+....                  +.+..+.. 
T Consensus       117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECc
Confidence                  123567899999999999875  457888  88865   22221100                  00000000 


Q ss_pred             -------------------------cCCCCEEEEEeCCCcEEEEECCCCc--eeeeeeccC-------CCccceeEEEEc
Q psy8448         244 -------------------------TADGHSVLSASSDGTVKMWNLKTTE--CTSTFKSLG-------ASDIAVNSIHLL  289 (482)
Q Consensus       244 -------------------------~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-------~~~~~v~~i~~~  289 (482)
                                               .+++..++..+. +.+.+.|+....  .+..+....       ........++++
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s  272 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             cccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence                                     223333333334 566666665422  122221000       001111226899


Q ss_pred             CCCCCEEEEEe---C-----CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCE-EEEEe-CCcEEEEEeehhhh
Q psy8448         290 PKNTEHFVVCN---K-----TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEW-IYCVG-EDMVLVVRLIQQYL  358 (482)
Q Consensus       290 ~~~~~~l~~~~---~-----d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-l~~~~-~dg~i~iw~~~~~~  358 (482)
                      |++..++++..   .     ++.+.++|. +.+.+..+..+    .....++|+|||+. +++.. .++.|.        
T Consensus       273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~Vs--------  340 (368)
T 1mda_H          273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLD--------  340 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEE--------
T ss_pred             CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEE--------
Confidence            99855555444   2     245669999 67777777643    25788999999984 55566 589999        


Q ss_pred             hhhcccccceeeeecccceeeccc
Q psy8448         359 KESNLMKTLQCLQEETGVSLNTVD  382 (482)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~  382 (482)
                                ++|+.+++.+.++.
T Consensus       341 ----------VID~~t~kvv~~I~  354 (368)
T 1mda_H          341 ----------IYDAASDQDQSSVE  354 (368)
T ss_dssp             ----------EEESSSCEEEEECC
T ss_pred             ----------EEECCCCcEEEEEE
Confidence                      77777776666654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.24  E-value=3.4e-12  Score=117.94  Aligned_cols=204  Identities=14%  Similarity=0.107  Sum_probs=113.8

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      ++..+++++.||.|+.||..+|+....+...          .+.+..+..++..+++++.||.|+.||..+++.+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~----------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKED----------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECC----------CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCC----------CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence            5778999999999999999999987665531          223333445677788888999999999999887766532


Q ss_pred             ccCCCeE-EEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy8448         191 AHSLGVT-CIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC  269 (482)
Q Consensus       191 ~~~~~v~-~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~  269 (482)
                      .....+. +..+. .+..+++++.++.|+.||.++|+.+..+..+.    ...++|++..+++++.++.|..||.++++.
T Consensus        78 ~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           78 TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             CHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence            1111110 00111 34567888889999999999999888776543    234567888899999999999999999987


Q ss_pred             eeeeeccCCCccceeEEEEcCCC--CCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE-EEEEcCCCC
Q psy8448         270 TSTFKSLGASDIAVNSIHLLPKN--TEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL-CCTTSPRGE  338 (482)
Q Consensus       270 ~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~-~~~~~~~g~  338 (482)
                      +..+..   .  ......+.++.  ...+++++.++.++.||. +|+.+.....    ..++. ..+++++|.
T Consensus       153 ~W~~~~---~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~----~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          153 RWNATY---F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY----ASPVVAFYVWQREGL  216 (369)
T ss_dssp             CCEEEE---E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC----SSCEEEEEECTTSSC
T ss_pred             EEeEec---c--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC----CCceEEEEEecCCce
Confidence            666541   1  11222233321  135777889999999999 6877766653    23333 334455554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.24  E-value=1.5e-09  Score=108.42  Aligned_cols=239  Identities=12%  Similarity=0.107  Sum_probs=149.4

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccc-c-ccE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM-E-EAV-MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL  188 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~-~~i-~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  188 (482)
                      +..|++++.++.|..+|..+|+.+-.+..........+ . ..+ ..+++  .+..+++++.|+.|..+|.++|+.+..+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            55777778889999999999998876654322110000 0 000 11122  3567888999999999999999998887


Q ss_pred             ecc-cCCCeEEEEEcc---CCCEEEEEE------CCCeEEEEeCCCCceEEEeeccc-----------------------
Q psy8448         189 EKA-HSLGVTCIQFSR---DNSQILTAS------FDTYVRIHGLKSGKMLKEFRGHS-----------------------  235 (482)
Q Consensus       189 ~~~-~~~~v~~i~~~~---~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~-----------------------  235 (482)
                      ... +......+..+|   ++ .++++.      .++.|+.||.++++.+..+....                       
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            533 211111111112   44 455543      36899999999999887765210                       


Q ss_pred             --------cceeEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceeeeeeccCC------Cccc
Q psy8448         236 --------SFVNDITFTADGHSVLSASSDGT-------------------VKMWNLKTTECTSTFKSLGA------SDIA  282 (482)
Q Consensus       236 --------~~i~~l~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~------~~~~  282 (482)
                              .....++++|+...++.++.++.                   |..+|.++++.+-.++....      ...+
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  306 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH  306 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence                    01125788998899999887763                   99999999998877763211      0111


Q ss_pred             eeEEEEcCCCC--CEEEEEeCCCeEEEEEc-CCcEEEEecCCcc-------------------------cC---------
Q psy8448         283 VNSIHLLPKNT--EHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR-------------------------EG---------  325 (482)
Q Consensus       283 v~~i~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~-------------------------~~---------  325 (482)
                      ..-.....+|.  ..++.++.+|.++++|. +|+.+........                         ..         
T Consensus       307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~  386 (689)
T 1yiq_A          307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW  386 (689)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred             cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence            11122222331  37888999999999999 7887644332110                         00         


Q ss_pred             --cCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         326 --GDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       326 --~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                        ..-..++++|+...+++...+....++.
T Consensus       387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~  416 (689)
T 1yiq_A          387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEH  416 (689)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEEEC
T ss_pred             cccCCCcceECCCCCEEEEeccccceeeee
Confidence              0011378899988998888776666543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.23  E-value=1.1e-09  Score=109.28  Aligned_cols=238  Identities=10%  Similarity=0.102  Sum_probs=151.2

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccc---cccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM---EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL  188 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h---~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  188 (482)
                      +..|++++.++.|.-+|..+|+.+-.+...........   ......+++  .+..+++++.|+.+..+|..+++.+..+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            55677777789999999999998876654422110000   000112222  3567888899999999999999999887


Q ss_pred             ecccC----CCeEE-EEEccCCCEEEEEEC------CCeEEEEeCCCCceEEEeeccccc--------------------
Q psy8448         189 EKAHS----LGVTC-IQFSRDNSQILTASF------DTYVRIHGLKSGKMLKEFRGHSSF--------------------  237 (482)
Q Consensus       189 ~~~~~----~~v~~-i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~--------------------  237 (482)
                      .....    ..+.+ ...  .+..+++++.      ++.|+.+|.++++.+..+......                    
T Consensus       155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            53201    11111 111  2345665543      689999999999998777532111                    


Q ss_pred             ------------eeEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeeeeeccCCC------c
Q psy8448         238 ------------VNDITFTADGHSVLSASSDG-------------------TVKMWNLKTTECTSTFKSLGAS------D  280 (482)
Q Consensus       238 ------------i~~l~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~------~  280 (482)
                                  ...++++|++..++.++.++                   .|..+|.++++.+..++.....      .
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence                        13578899999898887664                   4999999999988777632110      1


Q ss_pred             cceeEEEEcCCCC--CEEEEEeCCCeEEEEEc-CCcEEEEecCCccc--------CcCE---------------------
Q psy8448         281 IAVNSIHLLPKNT--EHFVVCNKTNTVVIMNM-QGQIVRSLSSGKRE--------GGDF---------------------  328 (482)
Q Consensus       281 ~~v~~i~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~--------~~~v---------------------  328 (482)
                      ....-+....+|.  ..++.++.+|.++++|. +|+.+..+......        ..++                     
T Consensus       313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~  392 (677)
T 1kb0_A          313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (677)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence            1112222333442  57888999999999999 68887666432100        0001                     


Q ss_pred             ---EEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         329 ---LCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       329 ---~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                         ..++++|++.++++...+-...++.
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~  420 (677)
T 1kb0_A          393 HNWHPMSFNPQTGLVYLPAQNVPVNLMD  420 (677)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEE
T ss_pred             cCCCCceEcCCCCEEEEeChhcceeeec
Confidence               1468889988888877665555443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.23  E-value=1.2e-08  Score=85.88  Aligned_cols=200  Identities=9%  Similarity=0.079  Sum_probs=136.4

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVD--GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS  167 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~  167 (482)
                      +..+...+....-...+.|++ +.++.+.+.+  ..|+.+|+.+++....+.....       ..-..++..  ++.|..
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-------~fgeGi~~~--~~~ly~   79 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-------YFGAGIVAW--RDRLIQ   79 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-------CCEEEEEEE--TTEEEE
T ss_pred             EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-------cceeEEEEe--CCEEEE
Confidence            444444444456677999986 5555666654  4899999999999887765431       111233333  444444


Q ss_pred             E-eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccc-----cceeEE
Q psy8448         168 G-SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS-----SFVNDI  241 (482)
Q Consensus       168 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~l  241 (482)
                      . -.++.+.++|..+.+.+.++..+. . -..++  +++..|+.+..++.|.++|..+.+.+.++.-..     ..++.+
T Consensus        80 ltw~~~~v~v~D~~tl~~~~ti~~~~-~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL  155 (243)
T 3mbr_X           80 LTWRNHEGFVYDLATLTPRARFRYPG-E-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL  155 (243)
T ss_dssp             EESSSSEEEEEETTTTEEEEEEECSS-C-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEeeCCEEEEEECCcCcEEEEEeCCC-C-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence            4 478899999999999999985432 2 23343  577778877778999999999999887775321     245667


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC----------CCccceeEEEEcCCCCCEEEEEeCCCe
Q psy8448         242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----------ASDIAVNSIHLLPKNTEHFVVCNKTNT  304 (482)
Q Consensus       242 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~i~~~~~~~~~l~~~~~d~~  304 (482)
                      .+. +|+..+..-.+..|.+.|.++++.+..+....          ....-.+.|+++|++..++++|-.=..
T Consensus       156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~  227 (243)
T 3mbr_X          156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPM  227 (243)
T ss_dssp             EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSE
T ss_pred             EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence            766 66655555567899999999999888776321          122456899999998666666644333

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.20  E-value=1.3e-08  Score=86.29  Aligned_cols=198  Identities=11%  Similarity=0.096  Sum_probs=137.5

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-E
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-G  168 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~  168 (482)
                      +..+.+...-+.-...+.|+ ++.+.++.+.+|.|+++|+++++....+ ....       ..-..+++.  ++.|.. .
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-------~FgeGit~~--g~~Ly~lt  112 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-------IFAEGLASD--GERLYQLT  112 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-------CCEEEEEEC--SSCEEEEE
T ss_pred             EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-------cceeEEEEe--CCEEEEEE
Confidence            34444444445556789998 4566677788899999999999988777 4321       112234444  444444 4


Q ss_pred             eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec--ccc---ceeEEEE
Q psy8448         169 SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG--HSS---FVNDITF  243 (482)
Q Consensus       169 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~i~~l~~  243 (482)
                      -.++.+.+||..+.+.+.++.....  -..++  ++++.|+.+..++.|.++|.++.+.+..+.-  +..   .++.+.|
T Consensus       113 w~~~~v~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          113 WTEGLLFTWSGMPPQRERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC  188 (268)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             ccCCEEEEEECCcCcEEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence            4688999999999999999854322  23333  5788888887899999999999998887753  222   3467777


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC----------CCccceeEEEEcCCCCCEEEEEeCCC
Q psy8448         244 TADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG----------ASDIAVNSIHLLPKNTEHFVVCNKTN  303 (482)
Q Consensus       244 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~i~~~~~~~~~l~~~~~d~  303 (482)
                      . +|+..+..-.+..|.+.|.++++.+..+....          ....-.+.|++.|++..++++|-.=.
T Consensus       189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp  257 (268)
T 3nok_A          189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP  257 (268)
T ss_dssp             E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred             e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence            7 67655555568899999999999888776321          12245689999999877777765433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.20  E-value=5.6e-09  Score=104.11  Aligned_cols=234  Identities=11%  Similarity=0.072  Sum_probs=155.1

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccc-cccc-cccccccEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCC
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ-AQDN-FMLMEEAVMSLAYSRDSEMLASGSQ------SGKVKIWKIATG  182 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~-~~~h~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~  182 (482)
                      ++..|+.++.|+.|..+|..+|+.+-.+... .... ......++    .  .+..+++++.      +|.|..+|..++
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG  200 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETG  200 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCC
Confidence            3567888889999999999999987666543 1000 00001111    1  1345555543      689999999999


Q ss_pred             eEeEEeecccCC-------------------------------CeEEEEEccCCCEEEEEECCC----------------
Q psy8448         183 QCLRKLEKAHSL-------------------------------GVTCIQFSRDNSQILTASFDT----------------  215 (482)
Q Consensus       183 ~~~~~~~~~~~~-------------------------------~v~~i~~~~~~~~l~~~~~dg----------------  215 (482)
                      +.+..+......                               ....++++|++..++++..++                
T Consensus       201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~  280 (677)
T 1kb0_A          201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL  280 (677)
T ss_dssp             CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred             cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence            998877432111                               113578889888888887664                


Q ss_pred             ---eEEEEeCCCCceEEEeec--cc-------cceeEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeeeeeccCC--
Q psy8448         216 ---YVRIHGLKSGKMLKEFRG--HS-------SFVNDITFTADG---HSVLSASSDGTVKMWNLKTTECTSTFKSLGA--  278 (482)
Q Consensus       216 ---~i~i~d~~~~~~~~~~~~--~~-------~~i~~l~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--  278 (482)
                         .|..+|.++++.+..+..  |.       .....+....+|   ..++.++.+|.++++|.++++.+..+.....  
T Consensus       281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~  360 (677)
T 1kb0_A          281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW  360 (677)
T ss_dssp             TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred             eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence               599999999999887763  21       122233334467   6788999999999999999998766542110  


Q ss_pred             ------Cccce------------------------eEEEEcCCCCCEEEEEeC---------------------------
Q psy8448         279 ------SDIAV------------------------NSIHLLPKNTEHFVVCNK---------------------------  301 (482)
Q Consensus       279 ------~~~~v------------------------~~i~~~~~~~~~l~~~~~---------------------------  301 (482)
                            ...++                        ..++++|++ .++++...                           
T Consensus       361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  439 (677)
T 1kb0_A          361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG  439 (677)
T ss_dssp             EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred             ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeecccccccccccccccccccc
Confidence                  00111                        256788887 56665432                           


Q ss_pred             ----------------CCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         302 ----------------TNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       302 ----------------d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                                      .+.|..||+ +++.+-.+...    .++....+..++..++.++.||.+++||..
T Consensus       440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             cccccccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence                            278999999 67777666532    233444566678899999999999955543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.19  E-value=1.4e-09  Score=103.12  Aligned_cols=221  Identities=10%  Similarity=0.100  Sum_probs=157.6

Q ss_pred             CCCCEEEEEeC-CCeEEEEecCCCceeeccccccccccccccccEEEEEE-c-CCCCEEEEEe-----------------
Q psy8448         110 PDGQYLITGSV-DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-S-RDSEMLASGS-----------------  169 (482)
Q Consensus       110 ~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~-~-~~~~~l~~~~-----------------  169 (482)
                      +||++|..... ++.|.+.|+.+.+....+....       ...+..+++ + |+++++++++                 
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-------g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~  171 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-------AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  171 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-------CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-------CCCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence            38888877654 5679999999999777554332       245778887 5 8999998885                 


Q ss_pred             -CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC---------------------------------
Q psy8448         170 -QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT---------------------------------  215 (482)
Q Consensus       170 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---------------------------------  215 (482)
                       .++.+.++|..+.+...++..+.  ....++++|+|+++++++.+.                                 
T Consensus       172 ~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk  249 (595)
T 1fwx_A          172 NYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  249 (595)
T ss_dssp             GEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             ccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence             24579999999999888875322  456788999999999888553                                 


Q ss_pred             -----eEEEEeCCC--Cce-EEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------eeeeee
Q psy8448         216 -----YVRIHGLKS--GKM-LKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTE------------CTSTFK  274 (482)
Q Consensus       216 -----~i~i~d~~~--~~~-~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~  274 (482)
                           .|.+.|.++  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+            ..... 
T Consensus       250 ~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-  327 (595)
T 1fwx_A          250 YQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-  327 (595)
T ss_dssp             SEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-
T ss_pred             eeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-
Confidence                 367777776  444 444442 33567899999999888776 57889999998653            12222 


Q ss_pred             ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-C----------CcEEEEecCCcccCcCE--EEEEEcCCCCEEE
Q psy8448         275 SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-Q----------GQIVRSLSSGKREGGDF--LCCTTSPRGEWIY  341 (482)
Q Consensus       275 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~----------~~~~~~~~~~~~~~~~v--~~~~~~~~g~~l~  341 (482)
                         .-......++|+|+| ..+++.-.|++|..||+ .          .+.+.++..+.......  ....++|||++|+
T Consensus       328 ---~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          328 ---ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             ---BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             ---CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence               223456889999999 78888889999999998 3          35666666542111000  1235689999999


Q ss_pred             EEeC
Q psy8448         342 CVGE  345 (482)
Q Consensus       342 ~~~~  345 (482)
                      +...
T Consensus       404 ~~Nk  407 (595)
T 1fwx_A          404 CLSK  407 (595)
T ss_dssp             EEES
T ss_pred             EcCC
Confidence            8764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.17  E-value=1.9e-09  Score=98.25  Aligned_cols=220  Identities=10%  Similarity=0.008  Sum_probs=140.2

Q ss_pred             ccceeeecCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEc
Q psy8448          90 QLSKQIKFGSKSHVECARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS  159 (482)
Q Consensus        90 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  159 (482)
                      +...++..+.. +  .+.++||+++++++.          .++.|.+||+.+++...++.......+. .-.....++++
T Consensus        57 ~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~-~g~~P~~ia~S  132 (368)
T 1mda_H           57 VTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS-VGPRVHIIGNC  132 (368)
T ss_dssp             EEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-BSCCTTSEEEC
T ss_pred             eEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc-cCCCcceEEEc
Confidence            34445555654 4  799999999998886          3688999999999998887653110000 00235578999


Q ss_pred             CCCCEEEEEeC--CCcEEE--EEcCCCeEeEEeeccc-----------------CCCeEEEEE-----------------
Q psy8448         160 RDSEMLASGSQ--SGKVKI--WKIATGQCLRKLEKAH-----------------SLGVTCIQF-----------------  201 (482)
Q Consensus       160 ~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~-----------------~~~v~~i~~-----------------  201 (482)
                      |||++++++..  +..+.+  +|..+   +..+..+.                 .+.+..+..                 
T Consensus       133 pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~  209 (368)
T 1mda_H          133 ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA  209 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred             CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee
Confidence            99999999874  456888  88865   22221100                 000000000                 


Q ss_pred             ---------ccCCCEEEEEECCCeEEEEeCCCCc--eEEEeec-------c---ccceeEEEEcCCCCEEEEEeC-----
Q psy8448         202 ---------SRDNSQILTASFDTYVRIHGLKSGK--MLKEFRG-------H---SSFVNDITFTADGHSVLSASS-----  255 (482)
Q Consensus       202 ---------~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-------~---~~~i~~l~~~~~~~~l~~~~~-----  255 (482)
                               .+++..++..+. +.|.+.|.....  .+..+..       +   ......++++|+++.++++..     
T Consensus       210 i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~  288 (368)
T 1mda_H          210 QNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS  288 (368)
T ss_dssp             SCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC
T ss_pred             eeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCc
Confidence                     223333333334 666667765432  1221110       0   011122789999998887643     


Q ss_pred             ----CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEc-CCcEEEEecCC
Q psy8448         256 ----DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNM-QGQIVRSLSSG  321 (482)
Q Consensus       256 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~-~~~~~~~~~~~  321 (482)
                          ++.+.++|+.+.+.+..+..    ......++++|++..++++.. .++.|.++|+ +++.+..+..+
T Consensus       289 ~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          289 CLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             TTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             ccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence                23567999999998888752    236789999999966788888 6999999999 68888888764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.16  E-value=1.1e-07  Score=83.40  Aligned_cols=226  Identities=11%  Similarity=0.059  Sum_probs=137.4

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeec
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      |++|+.+.. +.|+.+++....... +....  .+......+..++|++++..|+.+. .++.|..+++..+.....+ .
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~-~~~~~--~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~   75 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKK-TEAKA--FLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-R   75 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCG-GGCEE--EEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-C
T ss_pred             CcEEEEEcC-CeEEEEEecCccccc-cccee--eecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-E
Confidence            345555553 578888887654211 10000  0000124578999999766666554 5689999998765443333 2


Q ss_pred             ccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC---CCcEEEEECCC
Q psy8448         191 AHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS---DGTVKMWNLKT  266 (482)
Q Consensus       191 ~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---dg~i~i~d~~~  266 (482)
                      ........+++++++..|+.+. ..+.|.++++..................++++|++..|+.+..   .+.|..+++..
T Consensus        76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            2234678999999766666554 5678999998654322222222245789999997666666554   36788888764


Q ss_pred             CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe-C
Q psy8448         267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-E  345 (482)
Q Consensus       267 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~  345 (482)
                      .. ...+..  ........++++|++..++++....+.|..++..+.....+...   ......++..  +..|+.+. .
T Consensus       156 ~~-~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~  227 (267)
T 1npe_A          156 TN-RRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWK  227 (267)
T ss_dssp             CC-CEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETT
T ss_pred             CC-cEEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECC
Confidence            32 222221  12235688999998756667777788999999976544444322   2233566654  45555554 5


Q ss_pred             CcEEE
Q psy8448         346 DMVLV  350 (482)
Q Consensus       346 dg~i~  350 (482)
                      ++.|.
T Consensus       228 ~~~v~  232 (267)
T 1npe_A          228 TNSVI  232 (267)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            57887

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.15  E-value=2e-08  Score=86.46  Aligned_cols=193  Identities=10%  Similarity=0.064  Sum_probs=134.2

Q ss_pred             cEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEE-ECCCeEEEEeCCCCceE
Q psy8448         152 AVMSLAYSRDSEMLASGSQ--SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSGKML  228 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~  228 (482)
                      ....+.|++++.+.++.+.  ++.|.++|+.+++.+..+..+.......+++.  +..|+.+ -.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            4689999998754444443  57999999999999888743332233345554  4455544 45789999999999999


Q ss_pred             EEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc---ceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         229 KEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI---AVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       229 ~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                      .++......  ...+++|++.++++..++.|.++|..+.+....+..-. ...   .++.+.|. ++ .+++....++.|
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~-~~~p~~~~nele~~-dg-~lyvn~~~~~~V  174 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY-NGHRVIRLNELEYI-NG-EVWANIWQTDCI  174 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC-CCcccccceeEEEE-CC-EEEEecCCCCeE
Confidence            888633111  23355677777777778999999999988887776321 112   35677877 55 566666678999


Q ss_pred             EEEEc-CCcEEEEecCCcc----------cCcCEEEEEEcCCCCEEE-EEeCCcEEEE
Q psy8448         306 VIMNM-QGQIVRSLSSGKR----------EGGDFLCCTTSPRGEWIY-CVGEDMVLVV  351 (482)
Q Consensus       306 ~i~d~-~~~~~~~~~~~~~----------~~~~v~~~~~~~~g~~l~-~~~~dg~i~i  351 (482)
                      .+.|. +++.+..+.....          .......++|+|+++.++ ++...+.++.
T Consensus       175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence            99999 7888887764210          113568999999987666 4556788883

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.15  E-value=3.3e-09  Score=96.98  Aligned_cols=203  Identities=11%  Similarity=0.093  Sum_probs=136.2

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEe--
Q psy8448          98 GSKSHVECARFSPDGQYLITGSV-----DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGS--  169 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~--  169 (482)
                      +|-..+.+++++++++++++-..     ++.|.+||+.+++....+......  ..+...+..+++++++..+ ++-.  
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh--cccccccceEEEecCCCEEEEEcCcc
Confidence            56678999999999987776543     578999999999876655443111  1123457899999865454 4444  


Q ss_pred             -CCCcEEEEEcCCCeEeEEeeccc-----------------------------CCCeEEEEEccCCCEEEEEECCC-eEE
Q psy8448         170 -QSGKVKIWKIATGQCLRKLEKAH-----------------------------SLGVTCIQFSRDNSQILTASFDT-YVR  218 (482)
Q Consensus       170 -~dg~i~iwd~~~~~~~~~~~~~~-----------------------------~~~v~~i~~~~~~~~l~~~~~dg-~i~  218 (482)
                       .++.|.+||+.+++..+.+ ..|                             ...+..++|+|+++.|+++..++ .+.
T Consensus       142 ~~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~  220 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMY  220 (343)
T ss_dssp             GGGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred             CCCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEE
Confidence             5789999999887765544 121                             12368899999999888887666 555


Q ss_pred             EEeCC---CCc-----eEE--EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEE
Q psy8448         219 IHGLK---SGK-----MLK--EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHL  288 (482)
Q Consensus       219 i~d~~---~~~-----~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~  288 (482)
                      .++..   .+.     ...  ...++......++++++|+++++...++.|.+||..+++.......  .......++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--~~~~~p~~va~  298 (343)
T 2qe8_A          221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD--EKLSWTDSFNF  298 (343)
T ss_dssp             EEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC--GGGSCEEEEEE
T ss_pred             EEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC--CceecCCeeEE
Confidence            55532   111     000  1123344567899999999888888899999999856654333221  12345789999


Q ss_pred             cCCCCCEEEEEeCCCeEE
Q psy8448         289 LPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       289 ~~~~~~~l~~~~~d~~i~  306 (482)
                      .+++ .++++.+..+.+.
T Consensus       299 ~~~g-~l~v~~~~~~~~~  315 (343)
T 2qe8_A          299 GSDG-YLYFDCNQLHHSA  315 (343)
T ss_dssp             CTTS-CEEEEECCGGGSG
T ss_pred             CCCC-cEEEEeCcccccc
Confidence            9987 6777776555443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.14  E-value=5.7e-09  Score=94.86  Aligned_cols=217  Identities=16%  Similarity=0.120  Sum_probs=149.2

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA  191 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  191 (482)
                      +..|..++.++.|..+|.. ++........        ...+.++...+++. +..++.++.|..+|.. ++....+. .
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~--------~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-~  174 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTK--------KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-T  174 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECS--------SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-C
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCC--------CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-c
Confidence            4567778888999999988 6655443322        23345556666666 6677888999999988 77766663 3


Q ss_pred             cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q psy8448         192 HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS  271 (482)
Q Consensus       192 ~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  271 (482)
                      ....+.++...+++. +.+++  +.|..+| .+++....+......+.++...+++. |..++.++.|..+|. +++...
T Consensus       175 ~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~  248 (330)
T 3hxj_A          175 NDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKW  248 (330)
T ss_dssp             SSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEE
T ss_pred             CCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeE
Confidence            445566777777776 44555  7899999 78877777766666788899988876 566777788888874 555555


Q ss_pred             eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448         272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV  351 (482)
Q Consensus       272 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~i  351 (482)
                      .+.   .....+..+...+++  .+.+++.++.+..+|.+++.+..+...   ...+.++...++|. |..++.+|.+++
T Consensus       249 ~~~---~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~~g~~~~~~~~~---~~~~~~~~~d~~g~-l~~gt~~G~~~~  319 (330)
T 3hxj_A          249 RFK---TGKRIESSPVIGNTD--TIYFGSYDGHLYAINPDGTEKWNFETG---SWIIATPVIDENGT-IYFGTRNGKFYA  319 (330)
T ss_dssp             EEE---CSSCCCSCCEECTTS--CEEEECTTCEEEEECTTSCEEEEEECS---SCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred             Eee---CCCCccccceEcCCC--eEEEecCCCCEEEECCCCcEEEEEEcC---CccccceEEcCCCE-EEEEcCCCeEEE
Confidence            554   222333445555454  577788888999999877776666543   44556677777776 566999999996


Q ss_pred             Eeeh
Q psy8448         352 RLIQ  355 (482)
Q Consensus       352 w~~~  355 (482)
                      ...+
T Consensus       320 ~~~~  323 (330)
T 3hxj_A          320 LFNL  323 (330)
T ss_dssp             EEC-
T ss_pred             Eecc
Confidence            5443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.13  E-value=6.4e-08  Score=87.56  Aligned_cols=245  Identities=9%  Similarity=0.036  Sum_probs=152.1

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccc------------cccccccccEEEEEEcC-CCCEEEE
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQ------------DNFMLMEEAVMSLAYSR-DSEMLAS  167 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------------~~~~~h~~~i~~l~~~~-~~~~l~~  167 (482)
                      ....+++|+++++++.++..++.|..|+..+++... +.....            .........+.++++.+ +++ |++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            345678899999988888889999999987655332 111000            00001123578999998 554 555


Q ss_pred             EeCCCcEEEEEcCCCeEeEEeec----ccCCCeEEEEEcc-CCCEEEEEEC-----------------CCeEEEEeCCCC
Q psy8448         168 GSQSGKVKIWKIATGQCLRKLEK----AHSLGVTCIQFSR-DNSQILTASF-----------------DTYVRIHGLKSG  225 (482)
Q Consensus       168 ~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~i~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~  225 (482)
                      +...+.|..+|..++.. ..+..    ........+++.+ +|...++-..                 ++.|..+|..++
T Consensus        97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            55555688888765532 22211    1123468899999 8876655432                 367999998777


Q ss_pred             ceEEEeeccccceeEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-
Q psy8448         226 KMLKEFRGHSSFVNDITFTADGHSVLSA-SSDGTVKMWNLKTTE--CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-  301 (482)
Q Consensus       226 ~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-  301 (482)
                      +...... .......++++|+++.|+++ +..+.|.+|++....  ....+...   .. ...+++.++| .++++... 
T Consensus       176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G-~l~va~~~~  249 (322)
T 2fp8_A          176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADG-HFWVSSSEE  249 (322)
T ss_dssp             EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTS-CEEEEEEEE
T ss_pred             EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCC-CEEEEecCc
Confidence            6433222 22346789999999876665 456889999987532  11222211   12 6788999998 66666544 


Q ss_pred             ---------CCeEEEEEcCCcEEEEecCCccc-CcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         302 ---------TNTVVIMNMQGQIVRSLSSGKRE-GGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       302 ---------d~~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                               .+.|..+|..++.+..+...... ...+..+++ .++++.++...++.|..+++.
T Consensus       250 ~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          250 LDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             ccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence                     46788888888888777643211 234556666 356555555567888855543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.12  E-value=9e-12  Score=115.08  Aligned_cols=177  Identities=13%  Similarity=0.071  Sum_probs=100.4

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecccc-cee
Q psy8448         161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSS-FVN  239 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~  239 (482)
                      ++..+++++.||.|..||..+|+.+..+..   ..+.+..+..++..+++++.|+.|+.||.++++.+..+..+.. .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            577899999999999999999999988843   4455555556777788888999999999999988766653321 111


Q ss_pred             -EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448         240 -DITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS  317 (482)
Q Consensus       240 -~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  317 (482)
                       +..+. .+..+++++.++.|..||.++|+.+..+..   +.    ...++|++ ..+++++.++.|+.||. +|+.+..
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF----ADSLSPST-SLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC----cccccccC-CEEEEEecCCEEEEEECCCCCEEEe
Confidence             11111 345678888899999999999998776642   21    23455655 78888899999999998 5665444


Q ss_pred             ecCCcccCcCEEEEEEcCCC---CEEEEEeCCcEEEEEee
Q psy8448         318 LSSGKREGGDFLCCTTSPRG---EWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g---~~l~~~~~dg~i~iw~~  354 (482)
                      +...     .....+++++.   ..+++++.||.++.||.
T Consensus       156 ~~~~-----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          156 ATYF-----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             EEEE-----EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             Eecc-----cccCccccCCccccceEEEECCCCEEEEEEC
Confidence            3321     11223334432   56778899999996554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.11  E-value=1.5e-07  Score=80.53  Aligned_cols=200  Identities=14%  Similarity=0.202  Sum_probs=138.6

Q ss_pred             ccccEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce
Q psy8448         149 MEEAVMSLAYSRDSEMLAS-GSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM  227 (482)
Q Consensus       149 h~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~  227 (482)
                      ....+..++|+|+++.|++ ...++.|...|.. ++.++.+..........+++.+++.++++.-.++.+.++++.....
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence            3567999999997665554 6678899999987 8888777433345688899998887666666678899998765442


Q ss_pred             ---EEEee------ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC---Cceeeeeec----cCCCccceeEEEEcCC
Q psy8448         228 ---LKEFR------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT---TECTSTFKS----LGASDIAVNSIHLLPK  291 (482)
Q Consensus       228 ---~~~~~------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~----~~~~~~~v~~i~~~~~  291 (482)
                         +....      ........|+|+|.++.|+++.......+|.+..   ......+..    .......+.+++++|.
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~  183 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ  183 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence               22221      1234468999999998888877665556665541   111111110    0012345789999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCcEEEEecCCccc------CcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         292 NTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE------GGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       292 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ...+++.....+.+..+|.+|+.+..+.-....      ....-.++|.++|+ |+..++.+.++
T Consensus       184 tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y  247 (255)
T 3qqz_A          184 KNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFY  247 (255)
T ss_dssp             TTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEE
T ss_pred             CCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEE
Confidence            877888888889999999999877666543211      13567899999997 55568888777

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.10  E-value=3e-07  Score=82.47  Aligned_cols=229  Identities=12%  Similarity=0.077  Sum_probs=143.1

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC--cEEEEE
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG--KVKIWK  178 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg--~i~iwd  178 (482)
                      .....++|+++++++++-..++.|..||.... ....+..         ...+..+++.++++++++.....  .|..+|
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~---------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV---------EGKVSGLAFTSNGDLVATGWNADSIPVVSLV  101 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC---------SSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC---------CCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence            56789999999997777767899999997653 3222221         24588999999998655544322  477777


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce-EEEee---------ccccceeEEEEcCCCC
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM-LKEFR---------GHSSFVNDITFTADGH  248 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~---------~~~~~i~~l~~~~~~~  248 (482)
                      ..+++...............++..+++..+++-..++.|+++|...++. +....         ..-.....+  +++++
T Consensus       102 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~  179 (306)
T 2p4o_A          102 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN  179 (306)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred             CCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence            7777654333222223345555555544344444588999999876532 21110         111234555  78887


Q ss_pred             EEEEEe-CCCcEEEEECCC-Cce--eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCccc
Q psy8448         249 SVLSAS-SDGTVKMWNLKT-TEC--TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKRE  324 (482)
Q Consensus       249 ~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  324 (482)
                      .|+.+. ..+.|..|++.. ++.  ...+..    ......+++.++| .++++....+.|.+++..++....... ...
T Consensus       180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~-~~~  253 (306)
T 2p4o_A          180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQA-EQG  253 (306)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECG-GGT
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeec-ccc
Confidence            666554 567899999875 321  112211    1235678899998 777777778899999988765332111 111


Q ss_pred             CcCEEEEEEc---CCCCEEEEEeCCc
Q psy8448         325 GGDFLCCTTS---PRGEWIYCVGEDM  347 (482)
Q Consensus       325 ~~~v~~~~~~---~~g~~l~~~~~dg  347 (482)
                      ....++++|.   |+++.|++.+..+
T Consensus       254 ~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          254 VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cCCceEEEEecccCCCCEEEEECCCC
Confidence            3567899998   8988888766543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.07  E-value=4.4e-07  Score=79.55  Aligned_cols=220  Identities=11%  Similarity=0.059  Sum_probs=140.5

Q ss_pred             CcEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCcEEEEE
Q psy8448         101 SHVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGKVKIWK  178 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd  178 (482)
                      ..+.+++|+++++.|. +-..++.|..+++..+.........        -.....+++.+++..|+.+ ...+.|.+++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~--------~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~  107 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--------LGSPEGIALDHLGRTIFWTDSQLDRIEVAK  107 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT--------CCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC--------CCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence            4578999999665555 4456789999998765432221111        1467899999976655555 4567899999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC---CCeEEEEeCCCCceEEEee-ccccceeEEEEcCCCCEEEEEe
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF---DTYVRIHGLKSGKMLKEFR-GHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      +..... ..+..........++++|++..|+.+..   .+.|..+++.... ...+. ........+++++++..|+.+.
T Consensus       108 ~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d  185 (267)
T 1npe_A          108 MDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVD  185 (267)
T ss_dssp             TTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             cCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence            864432 2221222245789999997667666654   3688888875432 23322 2334578999999877666555


Q ss_pred             -CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEE
Q psy8448         255 -SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCT  332 (482)
Q Consensus       255 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~  332 (482)
                       ..+.|.++|+........+.   ... ....++..  +..++++....+.|..+|. .++.+..+....  ......++
T Consensus       186 ~~~~~I~~~~~~g~~~~~~~~---~~~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~--~~~p~gi~  257 (267)
T 1npe_A          186 AGTHRAECLNPAQPGRRKVLE---GLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK--QTRLYGIT  257 (267)
T ss_dssp             TTTTEEEEEETTEEEEEEEEE---CCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS--CCCCCCEE
T ss_pred             CCCCEEEEEecCCCceEEEec---CCC-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc--ccccceee
Confidence             56789999997644333322   212 23456654  4356666666789999999 577777776442  12356678


Q ss_pred             EcCCCC
Q psy8448         333 TSPRGE  338 (482)
Q Consensus       333 ~~~~g~  338 (482)
                      +.|++.
T Consensus       258 ~~~~~~  263 (267)
T 1npe_A          258 IALSQC  263 (267)
T ss_dssp             EECSCC
T ss_pred             ecCccC
Confidence            888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.06  E-value=1.1e-07  Score=80.71  Aligned_cols=188  Identities=11%  Similarity=0.129  Sum_probs=130.6

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCce
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSG--KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKM  227 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~  227 (482)
                      .....+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+......--..+++  ++..|.... .++.+.+||.++.+.
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcE
Confidence            345788898 666666666665  89999999999998874322211223444  455555554 578999999999999


Q ss_pred             EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC-CCc-cceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG-ASD-IAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       228 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~-~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                      +.++.... .-..++  +++..|+.+..++.|.++|..+.+....+.... +.. ..++.+.|. +| .+++..-.++.|
T Consensus       120 ~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I  194 (262)
T 3nol_A          120 VRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKI  194 (262)
T ss_dssp             EEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred             EEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeE
Confidence            99887433 223444  567777777667889999999998888876421 111 234557776 55 666666678899


Q ss_pred             EEEEc-CCcEEEEecCCcc---------cCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         306 VIMNM-QGQIVRSLSSGKR---------EGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       306 ~i~d~-~~~~~~~~~~~~~---------~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      .+.|. +++.+..+.....         ...-.+.+||+|+++.|++.+..
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            99999 7888887765311         12345789999998888877753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.00  E-value=5e-07  Score=76.05  Aligned_cols=186  Identities=12%  Similarity=0.118  Sum_probs=128.6

Q ss_pred             ccEEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCce
Q psy8448         151 EAVMSLAYSRDSEMLASGSQS--GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKM  227 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~  227 (482)
                      .....+.|++ +.++.+.+.+  ..|+.+|+.+++.+..+......--..+++.  +..|. ..-.++.+.+||.++.+.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence            4577899986 5555555654  4899999999999888743322222334443  44444 445688999999999999


Q ss_pred             EEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCc---cceeEEEEcCCCCCEEEEEeCCCe
Q psy8448         228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASD---IAVNSIHLLPKNTEHFVVCNKTNT  304 (482)
Q Consensus       228 ~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~~~~~d~~  304 (482)
                      +.++.... .-..++  +++..|+.+..++.|.++|..+.+....+..-. +.   ..++.+.+. ++ .+++..-.+..
T Consensus        98 ~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~~~lNeLe~~-~G-~lyanvw~s~~  171 (243)
T 3mbr_X           98 RARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPLDNLNELEWV-NG-ELLANVWLTSR  171 (243)
T ss_dssp             EEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TT-EEEEEETTTTE
T ss_pred             EEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcccccceeeEEe-CC-EEEEEECCCCe
Confidence            99887533 234555  466667777778999999999998888776421 11   234566665 44 56655557889


Q ss_pred             EEEEEc-CCcEEEEecCCc----------ccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         305 VVIMNM-QGQIVRSLSSGK----------REGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       305 i~i~d~-~~~~~~~~~~~~----------~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      |.+.|. +++.+..+....          ....-.+.+|++|+++.|++.+.
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            999999 788887776431          11235678999999888777665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.98  E-value=2.4e-07  Score=85.81  Aligned_cols=216  Identities=11%  Similarity=0.094  Sum_probs=139.2

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeec
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEK  190 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  190 (482)
                      ++..++.++.++.|..+|..+|+...........    ...++    .  .+..+++++.++.|..+|..+++.+..+..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~----~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~  171 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA----LSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNL  171 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC----CSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce----EcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence            3557778888999999999999877555433210    01111    1  245788888999999999999998877642


Q ss_pred             ccCCC----eEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccc----eeE---EEEcC--CCCEEEEEeCCC
Q psy8448         191 AHSLG----VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSF----VND---ITFTA--DGHSVLSASSDG  257 (482)
Q Consensus       191 ~~~~~----v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----i~~---l~~~~--~~~~l~~~~~dg  257 (482)
                      .....    ......  .+..+++++.++.|..+|.++++.+.........    +..   +...|  .+..++.++.++
T Consensus       172 ~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g  249 (376)
T 3q7m_A          172 DMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG  249 (376)
T ss_dssp             CC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS
T ss_pred             CCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc
Confidence            21110    011222  2457888888999999999999988766532110    000   11111  246688888899


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPR  336 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~  336 (482)
                      .+..+|.++++.......     .....+...  + ..+++++.++.+..+|. +++.+.......  ...+.....  .
T Consensus       250 ~l~~~d~~tG~~~w~~~~-----~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~--~  317 (376)
T 3q7m_A          250 NLTALDLRSGQIMWKREL-----GSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVTLWTQSDLL--HRLLTSPVL--Y  317 (376)
T ss_dssp             CEEEEETTTCCEEEEECC-----CCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCEEEEECTTT--TSCCCCCEE--E
T ss_pred             EEEEEECCCCcEEeeccC-----CCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcEEEeecccC--CCcccCCEE--E
Confidence            999999999987765531     123334433  3 57888888999999998 677766654221  111222222  2


Q ss_pred             CCEEEEEeCCcEEE
Q psy8448         337 GEWIYCVGEDMVLV  350 (482)
Q Consensus       337 g~~l~~~~~dg~i~  350 (482)
                      +..|++++.+|.++
T Consensus       318 ~~~l~v~~~~g~l~  331 (376)
T 3q7m_A          318 NGNLVVGDSEGYLH  331 (376)
T ss_dssp             TTEEEEECTTSEEE
T ss_pred             CCEEEEEeCCCeEE
Confidence            56888999999999

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.98  E-value=5.3e-08  Score=97.18  Aligned_cols=237  Identities=9%  Similarity=0.091  Sum_probs=132.4

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-C
Q psy8448         105 CARFSP-DGQYLITGSVDG-----------FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-S  171 (482)
Q Consensus       105 ~~~~s~-~~~~l~s~~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-d  171 (482)
                      .+++.+ ++++++.|+.++           .+.+||..+++.........     .+.....++++.++++.+++|+. +
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-----~~~~~~~~~~~~~~g~lyv~GG~~~  264 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-----KHDMFCPGISMDGNGQIVVTGGNDA  264 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-----SCCCSSCEEEECTTSCEEEECSSST
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-----CCCCccccccCCCCCCEEEeCCCCC
Confidence            456677 888999887543           68899998877543222111     11233445677889999999884 4


Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CC-----CeEEEEeCCCCceEEEe----eccccceeEE
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FD-----TYVRIHGLKSGKMLKEF----RGHSSFVNDI  241 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~~i~~l  241 (482)
                      ..+.+||..+++....-.......-.+++..++++.++.|+ .+     ..+.+||..+.+-...-    ......-...
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~  344 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  344 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence            68999999877543322111122223456667899999888 34     47999999876533210    0000000001


Q ss_pred             EEcCCCCEEEEEeCC---------CcEEEEECCCCceeeeeeccCC------CccceeEEEEcCCCCCEEEEEeCCC---
Q psy8448         242 TFTADGHSVLSASSD---------GTVKMWNLKTTECTSTFKSLGA------SDIAVNSIHLLPKNTEHFVVCNKTN---  303 (482)
Q Consensus       242 ~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~l~~~~~d~---  303 (482)
                      .+..++..++.++.+         ..+..||..+............      ....-.++.+...+.++++.|+.++   
T Consensus       345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~  424 (656)
T 1k3i_A          345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD  424 (656)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred             eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence            122344555555444         3567888887664433221101      0112234444443437777777432   


Q ss_pred             --------eEEEEEcCCcEEEEecCCcccCcC-EEEEEEcCCCCEEEEEeCC
Q psy8448         304 --------TVVIMNMQGQIVRSLSSGKREGGD-FLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       304 --------~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~g~~l~~~~~d  346 (482)
                              .+.+||..............+... -.+++..|+|+.++.|+.+
T Consensus       425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence                    677888754333333211111222 2345667899999999865

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.98  E-value=3.5e-07  Score=77.58  Aligned_cols=186  Identities=6%  Similarity=0.032  Sum_probs=129.8

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  230 (482)
                      .....+.|+ ++.+..+.+.+|.|+++|+++++.+..+ .....-...+++.. +...+..-.++.+.+||.++.+.+.+
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence            345788887 4566677778889999999999988877 33322223355542 23344445688999999999999998


Q ss_pred             eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCcc---ceeEEEEcCCCCCEEEEEeCCCeEEE
Q psy8448         231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDI---AVNSIHLLPKNTEHFVVCNKTNTVVI  307 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~~~~~d~~i~i  307 (482)
                      +.... .-..++  ++++.|+.+..++.|.++|..+.+....+.... ...   .++.+.|. +| .+++....++.|.+
T Consensus       132 i~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~v  205 (268)
T 3nok_A          132 TRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPVELINELECA-NG-VIYANIWHSSDVLE  205 (268)
T ss_dssp             EECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TT-EEEEEETTCSEEEE
T ss_pred             EeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCcccccccccEEe-CC-EEEEEECCCCeEEE
Confidence            87532 224455  567888888778999999999998888776422 222   34667776 55 66666667889999


Q ss_pred             EEc-CCcEEEEecCCc----------ccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         308 MNM-QGQIVRSLSSGK----------REGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       308 ~d~-~~~~~~~~~~~~----------~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      .|. +++.+..+....          ....-.+.+|++|+++.|++.+.
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            999 788877776431          11235678999998776666554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.95  E-value=2.3e-07  Score=92.39  Aligned_cols=204  Identities=10%  Similarity=0.113  Sum_probs=129.4

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccc-c-ccE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM-E-EAV-MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL  188 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~-~~i-~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  188 (482)
                      +..++.++.++.|.-+|..+|+.+-.+..........+ . ..+ ..+++  .+..+++++.|+.|..+|..+++.+..+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            55677777789999999999998766654322110000 0 000 11222  3557888889999999999999998887


Q ss_pred             ecccCCCeEEEEEcc--CCCEEEEEEC------CCeEEEEeCCCCceEEEeeccc-------------------------
Q psy8448         189 EKAHSLGVTCIQFSR--DNSQILTASF------DTYVRIHGLKSGKMLKEFRGHS-------------------------  235 (482)
Q Consensus       189 ~~~~~~~v~~i~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~-------------------------  235 (482)
                      ..........+...|  .+..++++..      +|.|..+|.++++.+..+....                         
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            532111000011111  1335555543      5899999999999988775210                         


Q ss_pred             ------cceeEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeeeeeccCCCc-------cce
Q psy8448         236 ------SFVNDITFTADGHSVLSASSDG-------------------TVKMWNLKTTECTSTFKSLGASD-------IAV  283 (482)
Q Consensus       236 ------~~i~~l~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~-------~~v  283 (482)
                            .....++++|+...++.++.++                   .|..+|.++++.+-.++... +.       .+.
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~-~~~wd~~~~~~~  302 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP-GDSWDFTATQQI  302 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCCCCSCE
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC-CccccccCCCCc
Confidence                  0112478888888888887766                   39999999999887776321 11       222


Q ss_pred             eEEEEcCCCC--CEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448         284 NSIHLLPKNT--EHFVVCNKTNTVVIMNM-QGQIVRSL  318 (482)
Q Consensus       284 ~~i~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~  318 (482)
                      ....+..++.  ..++.++.+|.++++|. +|+.+...
T Consensus       303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence            2222223442  26888999999999998 68877544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.94  E-value=8.7e-06  Score=83.30  Aligned_cols=243  Identities=10%  Similarity=0.080  Sum_probs=156.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ...|.++...++|.+.+ |+.+| |.+||..+++........ ..........|.++...++|. |-.|+.++-|..++.
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~  337 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNP-VENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHP  337 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCT-TSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCC-CCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCC
Confidence            35799999999887655 44455 899998776643321111 000111246799999999887 566777778999987


Q ss_pred             CCCeEeEEeec------ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec--------cccceeEEEEcC
Q psy8448         180 ATGQCLRKLEK------AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG--------HSSFVNDITFTA  245 (482)
Q Consensus       180 ~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~l~~~~  245 (482)
                      .++... .+..      .....|.++...++|. |.+|+.++-|..||..+++.......        ....|.++...+
T Consensus       338 ~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~  415 (795)
T 4a2l_A          338 IRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE  415 (795)
T ss_dssp             GGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET
T ss_pred             Ccccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC
Confidence            655432 2211      1234689999888775 66788887899999877654332211        235689999988


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeee-ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCC---
Q psy8448         246 DGHSVLSASSDGTVKMWNLKTTECTSTFK-SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSG---  321 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---  321 (482)
                      +++.|..|+.++-|.+||..+++...... ........|.++...+++ .+ .+|+. +.+.+|+........+...   
T Consensus       416 ~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~  492 (795)
T 4a2l_A          416 KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG-NL-WLGTL-SALVRFNPEQRSFTTIEKEKDG  492 (795)
T ss_dssp             TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS-CE-EEEES-SCEEEEETTTTEEEECCBCTTC
T ss_pred             CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC-CE-EEEec-CceeEEeCCCCeEEEccccccc
Confidence            88856677777779999998876433211 000224578888888876 44 44455 4588899865555555422   


Q ss_pred             -cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         322 -KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       322 -~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                       ......|.++...++|...+.. .+ -+..|+
T Consensus       493 ~~~~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~  523 (795)
T 4a2l_A          493 TPVVSKQITTLFRDSHKRLWIGG-EE-GLSVFK  523 (795)
T ss_dssp             CBCCCCCEEEEEECTTCCEEEEE-SS-CEEEEE
T ss_pred             cccCCceEEEEEECCCCCEEEEe-CC-ceEEEe
Confidence             1124678999999998866644 44 466343

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.94  E-value=2.2e-07  Score=92.58  Aligned_cols=232  Identities=11%  Similarity=0.116  Sum_probs=147.1

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccc-cccccccEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCeE
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDN-FMLMEEAVMSLAYSRDSEMLASGSQ------SGKVKIWKIATGQC  184 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~  184 (482)
                      +..++.++.|+.|..+|..+|+.+-......... ......++.    . ++ .++++..      +|.|..+|..+++.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v----~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV----V-KG-KVIIGNGGAEYGVRGFVSAYDADTGKL  190 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE----E-TT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE----E-CC-EEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence            5577888889999999999999876655421100 000011111    1 33 4555543      58999999999999


Q ss_pred             eEEeecccC------------------------------CCeEEEEEccCCCEEEEEECCC-------------------
Q psy8448         185 LRKLEKAHS------------------------------LGVTCIQFSRDNSQILTASFDT-------------------  215 (482)
Q Consensus       185 ~~~~~~~~~------------------------------~~v~~i~~~~~~~~l~~~~~dg-------------------  215 (482)
                      +..+.....                              .....+++.|+...++.++.++                   
T Consensus       191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~  270 (668)
T 1kv9_A          191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (668)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            888742110                              0112468888888888887776                   


Q ss_pred             eEEEEeCCCCceEEEeec--cc-------cceeEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeeeeeccC------
Q psy8448         216 YVRIHGLKSGKMLKEFRG--HS-------SFVNDITFTADGH---SVLSASSDGTVKMWNLKTTECTSTFKSLG------  277 (482)
Q Consensus       216 ~i~i~d~~~~~~~~~~~~--~~-------~~i~~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------  277 (482)
                      .|..+|.++++.+..+..  |.       .++....+..+++   .++.++.+|.+.++|.++++.+...+...      
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence            399999999999887764  22       2222233334665   68889999999999999999874433110      


Q ss_pred             ---CCccc------------------------eeEEEEcCCCCCEEEEEe------------------------------
Q psy8448         278 ---ASDIA------------------------VNSIHLLPKNTEHFVVCN------------------------------  300 (482)
Q Consensus       278 ---~~~~~------------------------v~~i~~~~~~~~~l~~~~------------------------------  300 (482)
                         ....+                        -..++++|+. .++++..                              
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  429 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEeccccceEeeeeccccccccccccCccccccC
Confidence               00000                        1125677766 3444311                              


Q ss_pred             ------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         301 ------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       301 ------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                            .+|.|..||. +++.+-......    +.....+...+.++++++.||.++.||.
T Consensus       430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~vf~g~~dg~l~a~d~  486 (668)
T 1kv9_A          430 DVPAAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSA  486 (668)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             CCCCCCccceEEEEeCCCCcEEEEccCCC----CCcCceeEeCCCEEEEECCcccchhhhh
Confidence                  2378999998 677766665432    2222334446889999999999996554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.91  E-value=6.8e-06  Score=84.08  Aligned_cols=235  Identities=10%  Similarity=0.107  Sum_probs=152.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG  182 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  182 (482)
                      |.++...+++.+.+ |+.++-|..|+..+++........       ....|.++...+++.+. .++.++-+..||..++
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~-------~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~  245 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPIL-------GTKQIQAILQQSPTRIW-VATEGAGLFLINPKTK  245 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC-----------CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTT
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCC-------CCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCC
Confidence            88888888887655 555545899998777654321111       13568888888877644 4554445889998776


Q ss_pred             eEeEEeecc-------cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec-------cccceeEEEEcCCCC
Q psy8448         183 QCLRKLEKA-------HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG-------HSSFVNDITFTADGH  248 (482)
Q Consensus       183 ~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~l~~~~~~~  248 (482)
                      +..... ..       ....|.++...++|. |..|+.+ -|.+||..+++.......       ....|.++..+++|.
T Consensus       246 ~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~  322 (795)
T 4a2l_A          246 EIKNYL-HSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG  322 (795)
T ss_dssp             EEEEEC-CCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC
T ss_pred             eEEEee-cCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC
Confidence            544322 11       135699999988776 5556655 588999877654332211       235699999999887


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeecc----CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc--
Q psy8448         249 SVLSASSDGTVKMWNLKTTECTSTFKSL----GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK--  322 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--  322 (482)
                       |..|+.++-|..|+..+.... .+...    ......|.++...+++  .+.+|+.++-|..|+........+....  
T Consensus       323 -lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~  398 (795)
T 4a2l_A          323 -MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDE  398 (795)
T ss_dssp             -EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCCEEEECCC---
T ss_pred             -EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence             556777777999987654322 22110    1124568899888876  4666788878999998544444443211  


Q ss_pred             ----ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         323 ----REGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       323 ----~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                          .....|.+++..++|+.|..|+.++-|..++
T Consensus       399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence                1246789999999998677788877788444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.90  E-value=6.4e-06  Score=73.97  Aligned_cols=223  Identities=11%  Similarity=0.016  Sum_probs=136.3

Q ss_pred             EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC---CeEeEEee
Q psy8448         114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIAT---GQCLRKLE  189 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~  189 (482)
                      +|+.+. ...|+..|+.+.+....+..         -..+.+++|++.+..|+.+. .++.|..+++..   +.....+.
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~---------~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~   72 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI   72 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEECS---------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhcC---------CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE
Confidence            344444 35688899887664433221         24578999998766565554 568999999875   12222221


Q ss_pred             cccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC--CcEEEEECCC
Q psy8448         190 KAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD--GTVKMWNLKT  266 (482)
Q Consensus       190 ~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d--g~i~i~d~~~  266 (482)
                      .........+++.+.+..|+ +-...+.|.++++........+.........++++|.+..|+.+...  +.|..+++..
T Consensus        73 ~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           73 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            22223467889987555554 44567899999987544333333334567899999977766665543  6788888764


Q ss_pred             CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       267 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      . ....+..  ..-.....++++|++..++++-+..+.|..+|+++.....+............+++. .+..+++-...
T Consensus       153 ~-~~~~~~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~  228 (316)
T 1ijq_A          153 V-DIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  228 (316)
T ss_dssp             C-CEEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred             C-CeEEEEE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCC
Confidence            3 3333321  223456799999987566677777789999999765444443221112345677775 34444455566


Q ss_pred             cEEE
Q psy8448         347 MVLV  350 (482)
Q Consensus       347 g~i~  350 (482)
                      +.|.
T Consensus       229 ~~V~  232 (316)
T 1ijq_A          229 EAIF  232 (316)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            7777

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.86  E-value=7e-06  Score=70.17  Aligned_cols=204  Identities=11%  Similarity=0.154  Sum_probs=133.3

Q ss_pred             ecCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448          96 KFGSKSHVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus        96 ~~~h~~~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      +.+-.+.+..++|+|+++.|+ +...++.|...|.. ++....+....       ......+++.+++.++++.-.++.+
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-------~~D~EGIa~~~~g~~~vs~E~~~~l   93 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-------VKDLETIEYIGDNQFVISDERDYAI   93 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-------CSSEEEEEECSTTEEEEEETTTTEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-------CCChHHeEEeCCCEEEEEECCCCcE
Confidence            336667899999999766554 56778899999987 88777665432       2457788898888776766577889


Q ss_pred             EEEEcCCCeE---eEEee-----cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC---CCceEEEee-------cccc
Q psy8448         175 KIWKIATGQC---LRKLE-----KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK---SGKMLKEFR-------GHSS  236 (482)
Q Consensus       175 ~iwd~~~~~~---~~~~~-----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~-------~~~~  236 (482)
                      .++++.....   .....     .........++|+|.++.|+++.......+|.++   ....+..+.       .+..
T Consensus        94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence            9998765442   22221     1234557899999998888777765544555443   111122221       1233


Q ss_pred             ceeEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeeeccCCC------ccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         237 FVNDITFTADGHS-VLSASSDGTVKMWNLKTTECTSTFKSLGAS------DIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       237 ~i~~l~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                      .+.+++++|.... ++....+..|.++|.. ++.+..+....+.      -..-..|++.++| +++++ +..+.++.+.
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEEEEEE
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cCCceEEEEE
Confidence            5789999996554 4555566778899966 5555555432221      1356789999998 55555 6777766665


Q ss_pred             c
Q psy8448         310 M  310 (482)
Q Consensus       310 ~  310 (482)
                      .
T Consensus       251 ~  251 (255)
T 3qqz_A          251 P  251 (255)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.85  E-value=1.4e-06  Score=78.77  Aligned_cols=184  Identities=14%  Similarity=0.129  Sum_probs=118.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc-------------------cCCCeEEEEEccCCCEEEEEE
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA-------------------HSLGVTCIQFSRDNSQILTAS  212 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~~v~~i~~~~~~~~l~~~~  212 (482)
                      ...+++|.+++++++++..++.|..|+..+++.. .+...                   .......+++.+++..|+++.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3567889999987888888999999998765432 22110                   113478899997334566666


Q ss_pred             CCCeEEEEeCCCCceEEEeec-----cccceeEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCce
Q psy8448         213 FDTYVRIHGLKSGKMLKEFRG-----HSSFVNDITFTA-DGHSVLSASS-----------------DGTVKMWNLKTTEC  269 (482)
Q Consensus       213 ~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~l~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~~  269 (482)
                      ..+.|..+|..+++. ..+..     .......+++.+ +|+..++-..                 ++.|..||..+++.
T Consensus        99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            666688899765532 22211     123468899999 9986665432                 36788899877654


Q ss_pred             eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      .....    .......++++|++..++++-+..+.|..|++.+.   ....+...   .+ ...++++++|++.++...
T Consensus       178 ~~~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          178 TLLLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             EEEEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEEE
T ss_pred             EEecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEecC
Confidence            33222    12234679999998335555566789999998531   12222211   23 677999999986666544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.84  E-value=2e-06  Score=83.78  Aligned_cols=230  Identities=12%  Similarity=0.093  Sum_probs=142.4

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccc-cccccccEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCeE
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDN-FMLMEEAVMSLAYSRDSEMLASGSQ------SGKVKIWKIATGQC  184 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~i~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~  184 (482)
                      +..++.++.|+.|..+|..+|+..-......... ......++    .. + ..+++++.      ++.|..+|..+++.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~  188 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPF----VA-K-DTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE----EE-T-TEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCE----EE-C-CEEEEEecCCccCCCCEEEEEECCCCcE
Confidence            5577888889999999999999876554332100 00001111    11 3 35666554      78999999999999


Q ss_pred             eEEeecccCC-------------------------------------CeEEEEEccCCCEEEEEECC-------------
Q psy8448         185 LRKLEKAHSL-------------------------------------GVTCIQFSRDNSQILTASFD-------------  214 (482)
Q Consensus       185 ~~~~~~~~~~-------------------------------------~v~~i~~~~~~~~l~~~~~d-------------  214 (482)
                      +.++......                                     ....+++.++...++.+..+             
T Consensus       189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~  268 (571)
T 2ad6_A          189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence            8877432110                                     00235667766677766532             


Q ss_pred             ---CeEEEEeCCCCceEEEeecc--c--------cceeEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeeeeeccCC
Q psy8448         215 ---TYVRIHGLKSGKMLKEFRGH--S--------SFVNDITFTADGH---SVLSASSDGTVKMWNLKTTECTSTFKSLGA  278 (482)
Q Consensus       215 ---g~i~i~d~~~~~~~~~~~~~--~--------~~i~~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  278 (482)
                         +.|..+|.++++.+..++..  .        .++ -+....+|+   .++.++.+|.+.++|.++++.+..+.....
T Consensus       269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~  347 (571)
T 2ad6_A          269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA  347 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence               36999999999998877532  1        122 122224674   577788999999999999988766542110


Q ss_pred             ----------Cccce--------------------------eEEEEcCCCCCEEEEEe----------------------
Q psy8448         279 ----------SDIAV--------------------------NSIHLLPKNTEHFVVCN----------------------  300 (482)
Q Consensus       279 ----------~~~~v--------------------------~~i~~~~~~~~~l~~~~----------------------  300 (482)
                                ...++                          ..++++|+. .++++..                      
T Consensus       348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-g~~yv~~~~~~~~~~~~~~~~~~g~~~~g  426 (571)
T 2ad6_A          348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES-RTLYAGLNHICMDWEPFMLPYRAGQFFVG  426 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-TEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred             ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-CEEEEEchhccccccccccccccCCcccc
Confidence                      00111                          235677776 4554442                      


Q ss_pred             ---------------CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         301 ---------------KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       301 ---------------~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                                     .++.|..+|. +++.+-.+....    .+....+...+..++.++.||.++.+|
T Consensus       427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC----CccceeEEECCCEEEEEcCCCeEEEEE
Confidence                           3478999998 677766665321    122222233467888899999999444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.84  E-value=9.2e-06  Score=73.99  Aligned_cols=231  Identities=8%  Similarity=0.012  Sum_probs=142.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIA  180 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~  180 (482)
                      ..+|.+..+++ +|+.+. ...|+..++...........         -..+..++|++.+..|+.+. ..+.|..+++.
T Consensus        35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~---------~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~  103 (349)
T 3v64_C           35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHHRRELVFWSDVTLDRILRANLN  103 (349)
T ss_dssp             SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC---------CCceEEEEEeccccEEEEEeccCCceEEEecC
Confidence            44566666643 444443 35588888765543322211         24578999998666666554 66889999987


Q ss_pred             CCeEeEEeecccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-C-C
Q psy8448         181 TGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-D-G  257 (482)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d-g  257 (482)
                      .......+ .........+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.... . +
T Consensus       104 g~~~~~~~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~  182 (349)
T 3v64_C          104 GSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP  182 (349)
T ss_dssp             SCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred             CCCceEEE-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence            66543333 22334457889987555554 4455678999998755433333334456789999997666665543 4 7


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      .|..+++..........   ..-...+.++++|++..++++-...+.|..+++++.....+....  ......+++. .+
T Consensus       183 ~I~r~~~dG~~~~~~~~---~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav~-~~  256 (349)
T 3v64_C          183 RIEASSMDGSGRRIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVF-ED  256 (349)
T ss_dssp             EEEEEETTSCSCEESCC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEE-TT
T ss_pred             EEEEEeCCCCCcEEEEE---CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEEE-CC
Confidence            78888887543222221   223356899999887567777777889999999765444433221  3345677773 34


Q ss_pred             CEEEEEeCCcEEE
Q psy8448         338 EWIYCVGEDMVLV  350 (482)
Q Consensus       338 ~~l~~~~~dg~i~  350 (482)
                      ...++-...+.|.
T Consensus       257 ~ly~td~~~~~V~  269 (349)
T 3v64_C          257 SLYWTDWHTKSIN  269 (349)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             EEEEecCCCCeEE
Confidence            4444555567776

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.84  E-value=1.1e-06  Score=88.90  Aligned_cols=199  Identities=13%  Similarity=0.075  Sum_probs=118.6

Q ss_pred             CCCC-cEEEEEEc-CCCCEEEEEeC-C----CeEEEEecCCC-ceeeccccccccccccccccEEEEEEcCCCCEEEEEe
Q psy8448          98 GSKS-HVECARFS-PDGQYLITGSV-D----GFIEVWNFTTG-KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS  169 (482)
Q Consensus        98 ~h~~-~v~~~~~s-~~~~~l~s~~~-d----g~v~iwd~~~~-~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~  169 (482)
                      +|.- .+...+|| |||++||.+.. +    .+|+++|+.++ +.+.. ..         ......++|+||++.|+...
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~---------~~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV---------SGTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE---------EEECSCCEECSSTTEEEEEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc---------cCceeeEEEecCCCEEEEEE
Confidence            4443 68899999 99999886542 2    25999999988 63211 00         11234688999999888877


Q ss_pred             CC-----CcEEEEEcCCCeE--eEEeecccCCCeEEEEEccCCCEEEEEEC---CCeEEEEeCCCCc-eE--EEe-eccc
Q psy8448         170 QS-----GKVKIWKIATGQC--LRKLEKAHSLGVTCIQFSRDNSQILTASF---DTYVRIHGLKSGK-ML--KEF-RGHS  235 (482)
Q Consensus       170 ~d-----g~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~-~~~~  235 (482)
                      .+     ..|.++++.++..  ...+..........+.|+|||++|+....   ...|+++|+.++. ..  ..+ ....
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~  319 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK  319 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence            65     2588888876642  22232223344678899999999887653   3478899998752 22  333 2334


Q ss_pred             cceeEEEEcCCCCEEEEEe-CC----CcEEEEECCCCceeee-eeccCCCccceeEEEEcCCCCCEEEEEeCCCe--EEE
Q psy8448         236 SFVNDITFTADGHSVLSAS-SD----GTVKMWNLKTTECTST-FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNT--VVI  307 (482)
Q Consensus       236 ~~i~~l~~~~~~~~l~~~~-~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~--i~i  307 (482)
                      ....++.|+. +..|+..+ .+    ..|..+|+.++..... +... .....+..+.+.  +..++++...++.  |.+
T Consensus       320 ~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          320 GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-SEDVFMESIAVR--SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC-CSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred             CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC-CCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence            4455565544 55554443 33    2577777765322122 2110 122244555554  4366777777775  455


Q ss_pred             EEc
Q psy8448         308 MNM  310 (482)
Q Consensus       308 ~d~  310 (482)
                      +++
T Consensus       396 ~dl  398 (751)
T 2xe4_A          396 MMA  398 (751)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            564

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.83  E-value=2.6e-06  Score=83.03  Aligned_cols=236  Identities=13%  Similarity=0.087  Sum_probs=143.6

Q ss_pred             CCEEEEEeC-CCeEEEEec-CCCceeeccccccccccccc--ccc-EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeE
Q psy8448         112 GQYLITGSV-DGFIEVWNF-TTGKIRKDLKYQAQDNFMLM--EEA-VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR  186 (482)
Q Consensus       112 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~~~~h--~~~-i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  186 (482)
                      +..++.++. ++.|.-+|. .+|+.+-.............  ... ...+++  .+..+++++.|+.+..+|..+++.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            456666666 889999999 89998766544321100000  000 011222  35678888899999999999999988


Q ss_pred             EeecccC---CCeEE-EEEccCCCEEEEEEC------CCeEEEEeCCCCceEEEeeccccc-------------------
Q psy8448         187 KLEKAHS---LGVTC-IQFSRDNSQILTASF------DTYVRIHGLKSGKMLKEFRGHSSF-------------------  237 (482)
Q Consensus       187 ~~~~~~~---~~v~~-i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~-------------------  237 (482)
                      .......   ..+.+ ...  .+..+++++.      ++.|..+|.++++.+.++......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            7642210   01111 111  1345666654      789999999999998776532110                   


Q ss_pred             -------------------eeEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeeeeeccCC----
Q psy8448         238 -------------------VNDITFTADGHSVLSASSD----------------GTVKMWNLKTTECTSTFKSLGA----  278 (482)
Q Consensus       238 -------------------i~~l~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~----  278 (482)
                                         ...++++++...++.++.+                +.|..+|.++++.+-.++....    
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                               0235677776777776642                2599999999998877763210    


Q ss_pred             ---CccceeEEEEcCCCC--CEEEEEeCCCeEEEEEc-CCcEEEEecCCcc----------cCcCE--------------
Q psy8448         279 ---SDIAVNSIHLLPKNT--EHFVVCNKTNTVVIMNM-QGQIVRSLSSGKR----------EGGDF--------------  328 (482)
Q Consensus       279 ---~~~~v~~i~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~----------~~~~v--------------  328 (482)
                         ...++. +...++|.  ..++.++.+|.++++|. +|+.+........          ...++              
T Consensus       298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~  376 (571)
T 2ad6_A          298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT  376 (571)
T ss_dssp             CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred             cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence               112221 22223452  35677889999999998 7887766543210          00111              


Q ss_pred             ------------EEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         329 ------------LCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       329 ------------~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                                  ..++++|+...+++...+....++
T Consensus       377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~  412 (571)
T 2ad6_A          377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWE  412 (571)
T ss_dssp             EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred             EECCCCccccCCCCceECCCCCEEEEEchhcccccc
Confidence                        236788888899888776555544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.81  E-value=8.7e-06  Score=75.32  Aligned_cols=230  Identities=8%  Similarity=0.013  Sum_probs=142.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC
Q psy8448         103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIAT  181 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~  181 (482)
                      -.|.+..+. .+|+.+. ...|+..++...........         ...+..++|.+.+..|+.+. ..+.|..+++..
T Consensus        79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~---------~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g  147 (386)
T 3v65_B           79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHHRRELVFWSDVTLDRILRANLNG  147 (386)
T ss_dssp             SCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECS---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CeECCcccc-ceeEeec-CccceeeccCCCcEEEEecC---------CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            345555553 3444443 35688888876554332221         24588999998666565554 668899999876


Q ss_pred             CeEeEEeecccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC-C-Cc
Q psy8448         182 GQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS-D-GT  258 (482)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d-g~  258 (482)
                      +.....+ .........+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.+.. . +.
T Consensus       148 ~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~  226 (386)
T 3v65_B          148 SNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR  226 (386)
T ss_dssp             CCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             CCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence            6543333 22333456788887555554 4455678999998654433333333456789999997776666553 3 67


Q ss_pred             EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCC
Q psy8448         259 VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGE  338 (482)
Q Consensus       259 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~  338 (482)
                      |..+++..........   ..-...+.++++|++..++++-+..+.|..+++++.....+....  ......+++. .+.
T Consensus       227 I~r~~~dG~~~~~~~~---~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav~-~~~  300 (386)
T 3v65_B          227 IEASSMDGSGRRIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVF-EDS  300 (386)
T ss_dssp             EEEEETTSCSCEEEEC---SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEEE-TTE
T ss_pred             EEEEeCCCCCcEEEEE---CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEEE-CCE
Confidence            8888887543222221   223346789999877567777777889999999765444433221  3345677773 344


Q ss_pred             EEEEEeCCcEEE
Q psy8448         339 WIYCVGEDMVLV  350 (482)
Q Consensus       339 ~l~~~~~dg~i~  350 (482)
                      .+++-...+.|.
T Consensus       301 ly~td~~~~~V~  312 (386)
T 3v65_B          301 LYWTDWHTKSIN  312 (386)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEeeCCCCeEE
Confidence            445555667777

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.80  E-value=3.2e-06  Score=82.36  Aligned_cols=163  Identities=12%  Similarity=0.103  Sum_probs=104.8

Q ss_pred             EEEcCCCCE----EEEEeCCCeEEEEecCCCceeecccccccccc-ccccccEEEEEEcCCCCEEEEEe------CCCcE
Q psy8448         106 ARFSPDGQY----LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNF-MLMEEAVMSLAYSRDSEMLASGS------QSGKV  174 (482)
Q Consensus       106 ~~~s~~~~~----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~h~~~i~~l~~~~~~~~l~~~~------~dg~i  174 (482)
                      ++++|.+..    ++.++.|+.|..+|..+|+.+-.......... .....++    .. ++ .+++++      .+|.|
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~----v~-~g-~V~vg~~g~e~g~~g~v  184 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPY----VV-KD-KVIIGSSGAELGVRGYL  184 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE----EE-TT-EEEECCBCGGGTCCCEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCE----EE-CC-EEEEEecccccCCCCeE
Confidence            455444444    78888899999999999998765443221000 0001111    11 34 455554      37999


Q ss_pred             EEEEcCCCeEeEEeecccCC------------------------------------Ce-EEEEEccCCCEEEEEECC---
Q psy8448         175 KIWKIATGQCLRKLEKAHSL------------------------------------GV-TCIQFSRDNSQILTASFD---  214 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~------------------------------------~v-~~i~~~~~~~~l~~~~~d---  214 (482)
                      +.+|.++++.+.++......                                    .+ ..+++.++...++.+..+   
T Consensus       185 ~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p  264 (599)
T 1w6s_A          185 TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAP  264 (599)
T ss_dssp             EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC
T ss_pred             EEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcc
Confidence            99999999998877432211                                    00 134566777778877665   


Q ss_pred             -------------CeEEEEeCCCCceEEEeecccc---------ceeEEEEc-CCC---CEEEEEeCCCcEEEEECCCCc
Q psy8448         215 -------------TYVRIHGLKSGKMLKEFRGHSS---------FVNDITFT-ADG---HSVLSASSDGTVKMWNLKTTE  268 (482)
Q Consensus       215 -------------g~i~i~d~~~~~~~~~~~~~~~---------~i~~l~~~-~~~---~~l~~~~~dg~i~i~d~~~~~  268 (482)
                                   +.|..+|.++++.+..++....         ...-+... .+|   ..++.++.+|.+.++|.++++
T Consensus       265 ~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  344 (599)
T 1w6s_A          265 WNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (599)
T ss_dssp             SCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence                         3899999999999887764221         11112222 467   467778899999999999999


Q ss_pred             eeeeee
Q psy8448         269 CTSTFK  274 (482)
Q Consensus       269 ~~~~~~  274 (482)
                      .+....
T Consensus       345 ~lw~~~  350 (599)
T 1w6s_A          345 LVSANK  350 (599)
T ss_dssp             EEEEEE
T ss_pred             Eeeccc
Confidence            876654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.80  E-value=2e-05  Score=73.22  Aligned_cols=223  Identities=11%  Similarity=0.027  Sum_probs=138.0

Q ss_pred             EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCe---EeEEee
Q psy8448         114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQ---CLRKLE  189 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~---~~~~~~  189 (482)
                      +|+.+. ...|+..++...........         -..+..++|++.+..|+.+. ..+.|+.+++....   ....+.
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~---------~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~  154 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI  154 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECS---------CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccc---------cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence            454444 46799888876654332221         35688999999666666654 56789889886521   122222


Q ss_pred             cccCCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCC
Q psy8448         190 KAHSLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKT  266 (482)
Q Consensus       190 ~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~  266 (482)
                      .........+++.+.+..|+ +-...+.|.+.+++.......+.........|+++|.+..|+....  .+.|...++..
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            33345678899988544454 5456789999998766544444434456789999997776766653  37899999875


Q ss_pred             CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       267 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      ......+.   ..-...+.|++++++..++++-...+.|..+|++|.....+............+++. .+..+++-...
T Consensus       235 ~~~~~~~~---~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~  310 (400)
T 3p5b_L          235 VDIYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  310 (400)
T ss_dssp             CSCEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSS
T ss_pred             CccEEEEE---CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCC
Confidence            43322222   223456899999888566666667789999999776554443321112344567763 23344444555


Q ss_pred             cEEE
Q psy8448         347 MVLV  350 (482)
Q Consensus       347 g~i~  350 (482)
                      +.|.
T Consensus       311 ~~V~  314 (400)
T 3p5b_L          311 EAIF  314 (400)
T ss_dssp             CSEE
T ss_pred             CeEE
Confidence            6666

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.77  E-value=4.5e-06  Score=81.36  Aligned_cols=236  Identities=11%  Similarity=0.097  Sum_probs=145.7

Q ss_pred             CCEEEEEeC-CCeEEEEec-CCCceeecccccccccccc---ccccEEEEEEcCCCCE----EEEEeCCCcEEEEEcCCC
Q psy8448         112 GQYLITGSV-DGFIEVWNF-TTGKIRKDLKYQAQDNFML---MEEAVMSLAYSRDSEM----LASGSQSGKVKIWKIATG  182 (482)
Q Consensus       112 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~~~~---h~~~i~~l~~~~~~~~----l~~~~~dg~i~iwd~~~~  182 (482)
                      +..++.++. ++.|.-+|. .+|+.+-.+..........   .......+++.|.+..    +++++.|+.+..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456666776 889999999 8999876655432110000   0001123455444444    888889999999999999


Q ss_pred             eEeEEeecccC---CCeEE-EEEccCCCEEEEEE------CCCeEEEEeCCCCceEEEeeccccc---------------
Q psy8448         183 QCLRKLEKAHS---LGVTC-IQFSRDNSQILTAS------FDTYVRIHGLKSGKMLKEFRGHSSF---------------  237 (482)
Q Consensus       183 ~~~~~~~~~~~---~~v~~-i~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~---------------  237 (482)
                      +.+........   ..+.+ ..+. ++ .+++++      .++.|+.+|.++++.+..+......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            99877642210   01111 1111 34 555555      3799999999999998776532111               


Q ss_pred             ----------------------e-eEEEEcCCCCEEEEEeCCC----------------cEEEEECCCCceeeeeeccCC
Q psy8448         238 ----------------------V-NDITFTADGHSVLSASSDG----------------TVKMWNLKTTECTSTFKSLGA  278 (482)
Q Consensus       238 ----------------------i-~~l~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~~~~  278 (482)
                                            + ..+++.++...++.++.++                .|..+|.++++.+-.++....
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                  0 1356677778888777653                799999999998877764211


Q ss_pred             -------CccceeEEEEc-CCCC--CEEEEEeCCCeEEEEEc-CCcEEEEecCCc----------ccCcCE---------
Q psy8448         279 -------SDIAVNSIHLL-PKNT--EHFVVCNKTNTVVIMNM-QGQIVRSLSSGK----------REGGDF---------  328 (482)
Q Consensus       279 -------~~~~v~~i~~~-~~~~--~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~----------~~~~~v---------  328 (482)
                             ...++. +... .+|.  ..++.++.+|.++++|. +|+.+.......          ....++         
T Consensus       300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  378 (599)
T 1w6s_A          300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM  378 (599)
T ss_dssp             CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred             ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence                   011221 2221 3442  36777889999999998 788776654321          000111         


Q ss_pred             -----------------EEEEEcCCCCEEEEEeCCcEEE
Q psy8448         329 -----------------LCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       329 -----------------~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                                       ..++++|+..++++...+....
T Consensus       379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~  417 (599)
T 1w6s_A          379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMD  417 (599)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE
T ss_pred             CCCccEeccCcccccCCCCccCCCCCCEEEEecccccee
Confidence                             2468899988888887765544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=4.3e-06  Score=78.49  Aligned_cols=239  Identities=8%  Similarity=0.026  Sum_probs=139.9

Q ss_pred             cEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-C----cEE
Q psy8448         102 HVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-G----KVK  175 (482)
Q Consensus       102 ~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-g----~i~  175 (482)
                      ....|+++| ++..|..+...+.|+.+|+..+....... .        ......++|++++++|+++... +    .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~--------~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~  208 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-G--------LSKVRTICWTHEADSMIITNDQNNNDRPNNY  208 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-C--------CSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-C--------CCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence            457899998 45566666555889999988766443322 1        2568899999999966666542 2    233


Q ss_pred             EEEcCCCeEe--EEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeec-cccceeEEEEcCCCCEEE
Q psy8448         176 IWKIATGQCL--RKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRG-HSSFVNDITFTADGHSVL  251 (482)
Q Consensus       176 iwd~~~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~  251 (482)
                      +++. .+...  ..+.  .......++++| ++..+++-..++.|..++...+........ .......++|+|++++|+
T Consensus       209 ~~~~-~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          209 ILTR-ESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             EEEG-GGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             EEeC-CCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence            4443 33222  2221  223456788999 666555555678999999987654222221 224578999999999555


Q ss_pred             EE-eCCCcEEEEECCC--Cce--eeeeecc-C--C----------CccceeEEEEc--------CCCCCEEEEEeCCCeE
Q psy8448         252 SA-SSDGTVKMWNLKT--TEC--TSTFKSL-G--A----------SDIAVNSIHLL--------PKNTEHFVVCNKTNTV  305 (482)
Q Consensus       252 ~~-~~dg~i~i~d~~~--~~~--~~~~~~~-~--~----------~~~~v~~i~~~--------~~~~~~l~~~~~d~~i  305 (482)
                      .+ ...+.|..++...  ++.  ...+... .  +          ...+-..++..        +++ .++++-...+.|
T Consensus       286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I  364 (430)
T 3tc9_A          286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCI  364 (430)
T ss_dssp             EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEE
T ss_pred             EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEE
Confidence            54 4577899987653  221  1111110 0  0          01111144443        233 556665667889


Q ss_pred             EEEEcCCcEEEEecCC----cc----------cCcCEEEEEEcCC-CCEEEEEeCCcEEEEEe
Q psy8448         306 VIMNMQGQIVRSLSSG----KR----------EGGDFLCCTTSPR-GEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       306 ~i~d~~~~~~~~~~~~----~~----------~~~~v~~~~~~~~-g~~l~~~~~dg~i~iw~  353 (482)
                      +.++.+|.........    ..          .-.....++++|+ +.++++-..++.|+..+
T Consensus       365 ~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          365 RILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG  427 (430)
T ss_dssp             EEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence            8888777544333220    00          0125788999995 55555555667787443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=3.5e-05  Score=78.65  Aligned_cols=242  Identities=10%  Similarity=0.033  Sum_probs=147.5

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA  180 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~  180 (482)
                      ..|.++...++|.+.+. +.+ -+.+||..+++........ ..........|.++...++|. |..|+..+-|.++|..
T Consensus       211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~  286 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNP-GNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ  286 (781)
T ss_dssp             SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC------------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred             CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCC-CccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence            56999999988876664 444 5899998776543221111 000001135799999988876 5556664568889987


Q ss_pred             CCeEeEEee-------------cccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee---------ccccce
Q psy8448         181 TGQCLRKLE-------------KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR---------GHSSFV  238 (482)
Q Consensus       181 ~~~~~~~~~-------------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~i  238 (482)
                      ++.......             ......|.++...++|. |.+|+.++-|..++...........         .....|
T Consensus       287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v  365 (781)
T 3v9f_A          287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV  365 (781)
T ss_dssp             CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred             CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence            665322110             11245689998888775 7778878889999987654322110         123568


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEe
Q psy8448         239 NDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL  318 (482)
Q Consensus       239 ~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  318 (482)
                      .++...+++. |..|+.++-|..||..++...............|.++...+++  .+.+|+.++.+..++........+
T Consensus       366 ~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~  442 (781)
T 3v9f_A          366 SSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQII  442 (781)
T ss_dssp             EEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEEC
T ss_pred             EEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEe
Confidence            9999988877 5566656668999987543322111011234678888887776  455577777788998865555555


Q ss_pred             cCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         319 SSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       319 ~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      .........|.++...++|.+.+ |+. +-+..+
T Consensus       443 ~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~  474 (781)
T 3v9f_A          443 ELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVI  474 (781)
T ss_dssp             CSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEE
T ss_pred             ccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEE
Confidence            43212256789999988886444 555 456633

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.73  E-value=7.5e-06  Score=76.84  Aligned_cols=240  Identities=8%  Similarity=0.030  Sum_probs=140.8

Q ss_pred             CcEEEEEEcCC--CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC-----c
Q psy8448         101 SHVECARFSPD--GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG-----K  173 (482)
Q Consensus       101 ~~v~~~~~s~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg-----~  173 (482)
                      .....++|+|+  +..|..+...+.|+.+|..+++...... .        ......++++++++ |+.+...+     .
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~--------~~~P~giavd~dG~-lyVad~~~~~~~~g  208 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-N--------IGQCADVNFTLNGD-MVVVDDQSSDTNTG  208 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-C--------CSCEEEEEECTTCC-EEEEECCSCTTSEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-C--------CCCccEEEECCCCC-EEEEcCCCCcccce
Confidence            34678999984  4445555444889999998777554332 1        24688999999999 55544321     1


Q ss_pred             EEEEEcCCCeE-eEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCceEEEeec--cccceeEEEEcCCCCE
Q psy8448         174 VKIWKIATGQC-LRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGKMLKEFRG--HSSFVNDITFTADGHS  249 (482)
Q Consensus       174 i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~l~~~~~~~~  249 (482)
                      +...+...+.. ...+  ........++++| ++.+.++-..++.|+.+|..+++....+..  .......++|+|+++.
T Consensus       209 v~~~~~~~~~~~~~~~--~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          209 IYLFTRASGFTERLSL--CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             EEEECGGGTTCCEEEE--EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             EEEEECCCCeeccccc--cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence            33333222211 0111  1233456788999 665555555678899999987765333221  1222347999999996


Q ss_pred             EEEEe-CCCcEEEEECCC--Ccee--eeeecc-C--C---------CccceeEEEE---------cCCCCCEEEEEeCCC
Q psy8448         250 VLSAS-SDGTVKMWNLKT--TECT--STFKSL-G--A---------SDIAVNSIHL---------LPKNTEHFVVCNKTN  303 (482)
Q Consensus       250 l~~~~-~dg~i~i~d~~~--~~~~--~~~~~~-~--~---------~~~~v~~i~~---------~~~~~~~l~~~~~d~  303 (482)
                      |+.+. ..+.|+.+++..  +...  ..+... .  +         .-.....+++         .+++ .++++-...+
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~  365 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSH  365 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTT
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCC
Confidence            65554 567899988652  3211  111110 0  0         1123466888         5555 6777777778


Q ss_pred             eEEEEEcCCcEEEEecCCc--------------ccCcCEEEEEEc-CCCCEEEEEeCCcEEEEEe
Q psy8448         304 TVVIMNMQGQIVRSLSSGK--------------REGGDFLCCTTS-PRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       304 ~i~i~d~~~~~~~~~~~~~--------------~~~~~v~~~~~~-~~g~~l~~~~~dg~i~iw~  353 (482)
                      .|+.++.+|......-...              ..-.....++++ ++|.++++-..++.|+..+
T Consensus       366 ~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          366 TVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             EEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            9999998774433332111              012346789999 5666666666677887443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.73  E-value=0.00013  Score=65.81  Aligned_cols=233  Identities=12%  Similarity=0.077  Sum_probs=126.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ...+.++.|.+++..+++| ..|.| +...+.++.-.......    ......+.++.+.+ +. +++++.++.|.. ..
T Consensus        35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~----~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~  105 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVL----DHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TT  105 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCC----SCCCCEEEEEEEET-TE-EEEEEETTEEEE-ES
T ss_pred             CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCC----CCCCccEEEEEecC-Ce-EEEEECCCeEEE-EC
Confidence            4579999998888777754 56755 33334343211111110    00134688899986 44 444555664433 22


Q ss_pred             CCCeEeEEeec--ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe-eccccceeEEEEcCCCCEEEEEeCC
Q psy8448         180 ATGQCLRKLEK--AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF-RGHSSFVNDITFTADGHSVLSASSD  256 (482)
Q Consensus       180 ~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d  256 (482)
                      ..++.-.....  .....+..+.+.+++..++++ .++.|.. ..+.++.-... .+....+..+.+.+++.+++++. +
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~  182 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-R  182 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-T
T ss_pred             CCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-C
Confidence            33433333211  123457788877766555544 4665533 22334433222 23455788999999988776654 4


Q ss_pred             CcEEE-EECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCC-cccCcCEEEEEE
Q psy8448         257 GTVKM-WNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSG-KREGGDFLCCTT  333 (482)
Q Consensus       257 g~i~i-~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~-~~~~~~v~~~~~  333 (482)
                      |.+.. .|- .++.-..+..  .....+..+.+.+++ .+ ++.+.+|.+++.+.+ ++....+... ......+.++++
T Consensus       183 G~~~~S~d~-gG~tW~~~~~--~~~~~~~~~~~~~~g-~~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~  257 (327)
T 2xbg_A          183 GSFYSTWEP-GQTAWEPHNR--TTSRRLHNMGFTPDG-RL-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY  257 (327)
T ss_dssp             SSEEEEECT-TCSSCEEEEC--CSSSCEEEEEECTTS-CE-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred             CcEEEEeCC-CCCceeECCC--CCCCccceeEECCCC-CE-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence            54443 332 1222122211  345578889998886 44 455667887776543 4444333322 111245888999


Q ss_pred             cCCCCEEEEEeCCcEEE
Q psy8448         334 SPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       334 ~~~g~~l~~~~~dg~i~  350 (482)
                      .+++..++++. +|.++
T Consensus       258 ~~~~~~~~~g~-~g~i~  273 (327)
T 2xbg_A          258 RTPNEVWLAGG-AGALL  273 (327)
T ss_dssp             SSSSCEEEEES-TTCEE
T ss_pred             cCCCEEEEEeC-CCeEE
Confidence            98877666554 56554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.70  E-value=1.1e-05  Score=78.80  Aligned_cols=160  Identities=16%  Similarity=0.210  Sum_probs=101.3

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccc-cccccccEEEEEEcCCCC-EEEEEe------CCCcEEEEEcCCCe
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDN-FMLMEEAVMSLAYSRDSE-MLASGS------QSGKVKIWKIATGQ  183 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~i~~l~~~~~~~-~l~~~~------~dg~i~iwd~~~~~  183 (482)
                      +..++.++.|+.|.-+|..+|+..-......... ......++.. .=..+++ .+++++      .++.|..+|..+++
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence            4567788889999999999999876554332110 0001112211 0001233 555554      37899999999999


Q ss_pred             EeEEeecccCCC-----------------------------------------eEEEEEccCCCEEEEEEC---------
Q psy8448         184 CLRKLEKAHSLG-----------------------------------------VTCIQFSRDNSQILTASF---------  213 (482)
Q Consensus       184 ~~~~~~~~~~~~-----------------------------------------v~~i~~~~~~~~l~~~~~---------  213 (482)
                      .+...... ...                                         -..+++.|+...++++..         
T Consensus       196 ~~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~  274 (582)
T 1flg_A          196 EIWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA  274 (582)
T ss_dssp             EEEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred             EEeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence            88765321 000                                         013566677777777663         


Q ss_pred             -----------C----CeEEEEeCCCCceEEEeec--cc--------cceeEEEEc-CCCC---EEEEEeCCCcEEEEEC
Q psy8448         214 -----------D----TYVRIHGLKSGKMLKEFRG--HS--------SFVNDITFT-ADGH---SVLSASSDGTVKMWNL  264 (482)
Q Consensus       214 -----------d----g~i~i~d~~~~~~~~~~~~--~~--------~~i~~l~~~-~~~~---~l~~~~~dg~i~i~d~  264 (482)
                                 |    +.|..+|.++++.+..++.  |.        .++ -+... .+|+   .++.++.+|.++++|.
T Consensus       275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~  353 (582)
T 1flg_A          275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDR  353 (582)
T ss_dssp             GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred             cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEEC
Confidence                       2    5899999999999887753  21        122 12222 4664   6788999999999999


Q ss_pred             CCCceeeeee
Q psy8448         265 KTTECTSTFK  274 (482)
Q Consensus       265 ~~~~~~~~~~  274 (482)
                      ++++.+..+.
T Consensus       354 ~tG~~lw~~~  363 (582)
T 1flg_A          354 SNGKLQNAFP  363 (582)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEecccc
Confidence            9999876654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.70  E-value=2.5e-05  Score=70.01  Aligned_cols=223  Identities=9%  Similarity=0.024  Sum_probs=135.8

Q ss_pred             EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCeEeEEeeccc
Q psy8448         114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGKVKIWKIATGQCLRKLEKAH  192 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~  192 (482)
                      +|+.+. ...|+..++........+....       -..+.+++|.+.+..|+.+ ...+.|..+++..+.....+....
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~-------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~   77 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGG-------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG   77 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEE-------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecC-------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC
Confidence            344433 4679999987654221111111       2357799999865555555 466789999987663222221222


Q ss_pred             CCCeEEEEEccCCCEEE-EEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCce
Q psy8448         193 SLGVTCIQFSRDNSQIL-TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTEC  269 (482)
Q Consensus       193 ~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~  269 (482)
                      -.....+++.+.+..|+ +-...+.|.++++........+.........++++|.+..|+.+..  .+.|..+++.... 
T Consensus        78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-  156 (318)
T 3sov_A           78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-  156 (318)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-
T ss_pred             CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-
Confidence            34567788987555554 4455678999998654333333344456789999997666766653  5788888876433 


Q ss_pred             eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEE
Q psy8448         270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL  349 (482)
Q Consensus       270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i  349 (482)
                      ...+..  ..-...+.++++|++..++++-+..+.|..++++|.....+....  ......+++.. +..+.+-...+.|
T Consensus       157 ~~~~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~glav~~-~~lywtd~~~~~V  231 (318)
T 3sov_A          157 RFIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFE-DILYWTDWSTHSI  231 (318)
T ss_dssp             CEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC--CSCEEEEEEET-TEEEEEETTTTEE
T ss_pred             eEEEEE--CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC--CCCceEEEEeC-CEEEEEecCCCeE
Confidence            222211  222345799999977567777777889999999765544443311  34456777753 3344455556777


Q ss_pred             E
Q psy8448         350 V  350 (482)
Q Consensus       350 ~  350 (482)
                      .
T Consensus       232 ~  232 (318)
T 3sov_A          232 L  232 (318)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=3.8e-05  Score=78.39  Aligned_cols=236  Identities=14%  Similarity=0.154  Sum_probs=147.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ...|.++...++|.+. .|+.++-|..|+..++..... ....    ......|.++...+++. |..|+.++-+..+|.
T Consensus       362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~-~~~~----~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~  434 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYN-KENR----ELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNT  434 (781)
T ss_dssp             SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC----------CCCSBEEEEEECTTSC-EEEEETTEEEEEECS
T ss_pred             CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEc-cCCC----CCCCcceEEEEECCCCC-EEEEeccCCEEEEcC
Confidence            3569999999888755 455455588999776543221 1100    11246799999888876 555677677889998


Q ss_pred             CCCeEeEEeec--ccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc-----ccceeEEEEcCCCCEEEE
Q psy8448         180 ATGQCLRKLEK--AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH-----SSFVNDITFTADGHSVLS  252 (482)
Q Consensus       180 ~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~l~~~~~~~~l~~  252 (482)
                      .+++.. .+..  .....|.++...+++. |..|+. +.|..+|..+++........     ...|.++...++|++. .
T Consensus       435 ~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-i  510 (781)
T 3v9f_A          435 RLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-I  510 (781)
T ss_dssp             SSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-E
T ss_pred             CCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-E
Confidence            766543 2311  1345788998887764 666666 56889998776543322211     3578999999988854 4


Q ss_pred             EeCCCcEEEEECCCCceeeeeecc-CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc-ccCcCEEE
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSL-GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK-REGGDFLC  330 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~  330 (482)
                      |+.++-|..||..+++.. .+... ......|.++...+++ . +..++.+|.+..||........+.... .....|.+
T Consensus       511 gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g-~-lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~  587 (781)
T 3v9f_A          511 GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKG-Q-MWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRA  587 (781)
T ss_dssp             EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTS-C-EEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCE
T ss_pred             EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCC-C-EEEEECCCceEEECCCCCcEEEccccCCCCCceEEE
Confidence            555344888998766433 33211 1224568888888877 4 444555665588888544444443221 12345778


Q ss_pred             EEEcCCCCEEEEEeCCcEEE
Q psy8448         331 CTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       331 ~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +...++|.+.+ ++.+|..+
T Consensus       588 i~~d~~g~lW~-~t~~Gl~~  606 (781)
T 3v9f_A          588 ISEDKNGNIWA-STNTGISC  606 (781)
T ss_dssp             EEECSSSCEEE-ECSSCEEE
T ss_pred             EEECCCCCEEE-EcCCceEE
Confidence            88988887555 45666443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.67  E-value=1.4e-05  Score=71.39  Aligned_cols=191  Identities=11%  Similarity=0.026  Sum_probs=115.2

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-C-eEEEEeCCCCceE
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-T-YVRIHGLKSGKML  228 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g-~i~i~d~~~~~~~  228 (482)
                      .....++|+++++++++-..++.|..||.... ....+.  .......+++.++++.+++.... + .|..+|..+++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            35678999999986666667889999997653 333332  33468899999999865554432 2 4777787777654


Q ss_pred             EEee-ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeee------ccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448         229 KEFR-GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC-TSTFK------SLGASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       229 ~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~------~~~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      .... ........++..+++..+++-..++.|.++|..+++. +....      .....-...+.+  +|++..++++-.
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence            3222 1222345556555554444444588899999876431 11000      000111233445  777755666667


Q ss_pred             CCCeEEEEEcCC--cE--EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         301 KTNTVVIMNMQG--QI--VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       301 ~d~~i~i~d~~~--~~--~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ..+.|..+++.+  ..  ...+..    ......++++++|++.++....+.|.
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~  236 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVV  236 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred             CCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEE
Confidence            788999999853  21  111111    12235588899998776666677777

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.60  E-value=3.5e-06  Score=84.08  Aligned_cols=238  Identities=13%  Similarity=0.053  Sum_probs=136.6

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CC-----
Q psy8448          99 SKSHVECARFSPDGQYLITGSV-DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QS-----  171 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~d-----  171 (482)
                      +.....++++.+++++++.|+. +..+.+||..+++-...-....       ...-.+++..++++.++.|+ .+     
T Consensus       241 ~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-------~R~~~s~~~~~dg~iyv~GG~~~~~~~~  313 (656)
T 1k3i_A          241 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-------ARGYQSSATMSDGRVFTIGGSWSGGVFE  313 (656)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-------CCSSCEEEECTTSCEEEECCCCCSSSCC
T ss_pred             CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-------cccccceEEecCCeEEEEeCcccCCccc
Confidence            3333445778899999999984 4589999998776443322111       11123455667899999988 34     


Q ss_pred             CcEEEEEcCCCeEeEEee---cccCCCeEEEEEccCCCEEEEEECC---------CeEEEEeCCCCceEEEeecccc---
Q psy8448         172 GKVKIWKIATGQCLRKLE---KAHSLGVTCIQFSRDNSQILTASFD---------TYVRIHGLKSGKMLKEFRGHSS---  236 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~---  236 (482)
                      ..+.+||..+++....-.   ......-....+..++..++.++.+         ..+..||..+.........+..   
T Consensus       314 ~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~  393 (656)
T 1k3i_A          314 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG  393 (656)
T ss_dssp             CCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred             ccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence            579999998776433200   0000000001122345555555444         3577888887764433322211   


Q ss_pred             ------ceeEEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCceeeee-eccCCCccceeEEEEcCCCCCEEE
Q psy8448         237 ------FVNDITFTA-DGHSVLSASSDG-----------TVKMWNLKTTECTSTF-KSLGASDIAVNSIHLLPKNTEHFV  297 (482)
Q Consensus       237 ------~i~~l~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~l~  297 (482)
                            .-.++.+.. +++.++.|+.++           .|.+||..+....... ... .....-.+....|++ .+++
T Consensus       394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p~~R~~~~~~~l~~g-~i~v  471 (656)
T 1k3i_A          394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-YFARTFHTSVVLPDG-STFI  471 (656)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-SSCCBSCEEEECTTS-CEEE
T ss_pred             cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC-CCCcccCCeEECCCC-CEEE
Confidence                  223444443 677777777432           5788888776544332 111 122223455667777 7888


Q ss_pred             EEeCC-----------CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         298 VCNKT-----------NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       298 ~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      .|+.+           ..+.+||........+...........+..+.|+|+.++.|+.
T Consensus       472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          472 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            88754           4689999965555444433222333345667899999999985

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.50  E-value=0.00016  Score=65.68  Aligned_cols=205  Identities=10%  Similarity=0.056  Sum_probs=125.3

Q ss_pred             CcEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEeCCCcEEEEE
Q psy8448         101 SHVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVKIWK  178 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd  178 (482)
                      ..+..++|++....|. +-...+.|..+++..+.....+...        -.....+++.+.+..| ++-...+.|.+.+
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~--------~~~p~glavd~~~g~ly~~d~~~~~I~~~~  144 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG--------LESPGGLAVDWVHDKLYWTDSGTSRIEVAN  144 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--------CSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC--------CCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence            4578999998655554 4456788999998765533222111        1345788898755545 4445667899999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-C-CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-C
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-D-TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-S  255 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~  255 (482)
                      +........+ .........+++.|.+..|+.+.. . +.|..+++............-.....|+++|++..|..+. .
T Consensus       145 ~dG~~~~~l~-~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~  223 (349)
T 3v64_C          145 LDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK  223 (349)
T ss_dssp             TTSCSCEEEE-CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCceEEEE-eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence            8654333222 333456789999996666655543 4 6899898864433222222344578999998777676655 4


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS  319 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~  319 (482)
                      .+.|..+|+........+.   ........+++. .+ .++++-...+.|..++. +|+....+.
T Consensus       224 ~~~I~~~~~dG~~~~~~~~---~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          224 HHVIERANLDGSHRKAVIS---QGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTEEEEEETTSCSCEEEEC---SSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCCCceEEEEe---CCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEEec
Confidence            6789999987543222222   122334566663 33 56666666777877774 555444443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=4.2e-05  Score=71.71  Aligned_cols=155  Identities=11%  Similarity=0.128  Sum_probs=102.8

Q ss_pred             cEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCC
Q psy8448         152 AVMSLAYSR-DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSG  225 (482)
Q Consensus       152 ~i~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~  225 (482)
                      ....|+++| ++..|+++...+.|+.+|+..+......  ........++|++++++|+++...+     .+..++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            467899998 4556777665588999998776654433  2445688999999999777766421     3444443 33


Q ss_pred             ceE--EEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC
Q psy8448         226 KML--KEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT  302 (482)
Q Consensus       226 ~~~--~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  302 (482)
                      ...  ..+. .......++++| ++.++++-..++.|..++...+....... . ........++++|++..++++-...
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~-~-~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT-I-QDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE-C-SSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE-c-CCCCcceeEEEcCCCCEEEEEECCC
Confidence            221  2222 233467889999 67766666677899999998765422222 1 1223467899999994366666778


Q ss_pred             CeEEEEEcCC
Q psy8448         303 NTVVIMNMQG  312 (482)
Q Consensus       303 ~~i~i~d~~~  312 (482)
                      +.|..++.++
T Consensus       292 ~~I~~~~~d~  301 (430)
T 3tc9_A          292 HYILRSDYDW  301 (430)
T ss_dssp             TEEEEEEEET
T ss_pred             CEEEEEeCCc
Confidence            8999988753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.48  E-value=0.00035  Score=62.52  Aligned_cols=207  Identities=10%  Similarity=0.015  Sum_probs=124.8

Q ss_pred             CCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCC---ceeeccccccccccccccccEEEEEEcCCCCEEE-EEeCCCcE
Q psy8448         100 KSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTG---KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA-SGSQSGKV  174 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-~~~~dg~i  174 (482)
                      -..+..++|++.++.| ++-..++.|..+++...   .....+...       .-.....+++.+.+..|+ +-...+.|
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-------~~~~p~glavd~~~~~ly~~d~~~~~I  101 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-------DIQAPDGLAVDWIHSNIYWTDSVLGTV  101 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-------SCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-------CCCCcCEEEEeecCCeEEEEECCCCEE
Confidence            4567899999866555 45556789999998751   111111100       013457888887554454 44567899


Q ss_pred             EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC--CeEEEEeCCCCceEEEe-eccccceeEEEEcCCCCEEE
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD--TYVRIHGLKSGKMLKEF-RGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~  251 (482)
                      .++++........+ .........+++.|.+..|+.+...  +.|...++.. +....+ ...-.....|++++++..|+
T Consensus       102 ~~~~~~g~~~~~~~-~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          102 SVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLY  179 (316)
T ss_dssp             EEEETTSSSEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             EEEeCCCCceEEEE-ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEE
Confidence            99998654333222 3334567899999977766666543  6888888753 333333 22345678999999877776


Q ss_pred             EEe-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448         252 SAS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL  318 (482)
Q Consensus       252 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~  318 (482)
                      .+. ..+.|..+|+.... ...+............+++.. + .++++-...+.|..++. +++.+..+
T Consensus       180 ~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          180 WVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCcceEEE
Confidence            665 45789999987433 333321111122345677643 3 56666667778888886 55544444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.46  E-value=0.00023  Score=71.58  Aligned_cols=218  Identities=10%  Similarity=0.003  Sum_probs=131.6

Q ss_pred             CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCe---EeEEeecccCCCe
Q psy8448         121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGKVKIWKIATGQ---CLRKLEKAHSLGV  196 (482)
Q Consensus       121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~---~~~~~~~~~~~~v  196 (482)
                      ...|+..++..........         ....+.+|+|.+....|+.+ ...+.|+.+++....   ....+........
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~---------~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P  473 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIP---------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  473 (791)
T ss_dssp             BSSEEEECTTSCCCEEEEC---------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             ccceeEeeccCCcceeeec---------CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence            3557777776554332221         12467899999865555554 456788888886531   1122212234456


Q ss_pred             EEEEEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeeee
Q psy8448         197 TCIQFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTECTSTF  273 (482)
Q Consensus       197 ~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~  273 (482)
                      ..|++.+.+..|+.+ ...+.|.+.++........+.........|+++|.+..|+.+..  .+.|...++........+
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv  553 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  553 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence            789998877555544 55679999998755443333334456889999998766766653  267999998754433322


Q ss_pred             eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEE-eCCcEEEEE
Q psy8448         274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV-GEDMVLVVR  352 (482)
Q Consensus       274 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~-~~dg~i~iw  352 (482)
                      .   ..-.....|++.+.+..++++-...+.|..++++|.....+............+++.  +.+|+.. ...+.|...
T Consensus       554 ~---~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~  628 (791)
T 3m0c_C          554 T---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSA  628 (791)
T ss_dssp             C---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             e---CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEE
Confidence            2   223467899999887566666666788999999776555544321112334566664  3355544 445666633

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.46  E-value=0.00013  Score=67.37  Aligned_cols=206  Identities=10%  Similarity=0.043  Sum_probs=127.0

Q ss_pred             CCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCcEEEE
Q psy8448         100 KSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGKVKIW  177 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iw  177 (482)
                      ...+..++|++.+..| ++-...+.|..+++..+.....+...        ......+++.+.+..|+. -...+.|.+.
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~--------~~~p~glavd~~~g~lY~~d~~~~~I~~~  186 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG--------LESPGGLAVDWVHDKLYWTDSGTSRIEVA  186 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS--------CSCCCCEEEETTTTEEEEEETTTTEEEEC
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC--------CCCccEEEEEeCCCeEEEEcCCCCeEEEE
Confidence            3457889999855555 45456788999998765533222211        124567888875555544 4456788888


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-C-CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-D-TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-  254 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-  254 (482)
                      ++........+ .........+++.|.+..|+.+.. . +.|..+++............-.....|+++|++..|+.+. 
T Consensus       187 ~~dg~~~~~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~  265 (386)
T 3v65_B          187 NLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA  265 (386)
T ss_dssp             BTTSCSCEEEE-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred             eCCCCceEEee-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence            87654333333 333456789999997766666553 3 6888888865433333333344578999998777666654 


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS  319 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~  319 (482)
                      ..+.|..+|+........+.   ........+++. .+ .++++....+.|..++. +|+....+.
T Consensus       266 ~~~~I~~~d~dG~~~~~~~~---~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          266 KHHVIERANLDGSHRKAVIS---QGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTTEEEEECTTSCSCEEEEC---SSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCEEEEEeCCCCeeEEEEE---CCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            46779999987543222222   122344567773 33 56666667788888884 665555444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.45  E-value=1.3e-05  Score=81.15  Aligned_cols=196  Identities=12%  Similarity=0.100  Sum_probs=116.7

Q ss_pred             cEEEEEEc-CCCCEEEEEeC-CC----cEEEEEcCCC-eEeEEeecccCCCeEEEEEccCCCEEEEEECC-----CeEEE
Q psy8448         152 AVMSLAYS-RDSEMLASGSQ-SG----KVKIWKIATG-QCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-----TYVRI  219 (482)
Q Consensus       152 ~i~~l~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~i  219 (482)
                      .+...+|| |||++|+.+.. +|    .|+++|+.++ +.+...   -......++|+||++.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99998887643 23    4999999988 632110   01113467899999888877655     36888


Q ss_pred             EeCCCCce--EEEee-ccccceeEEEEcCCCCEEEEEeC---CCcEEEEECCCCc-ee--eeeeccCCCccceeEEEEcC
Q psy8448         220 HGLKSGKM--LKEFR-GHSSFVNDITFTADGHSVLSASS---DGTVKMWNLKTTE-CT--STFKSLGASDIAVNSIHLLP  290 (482)
Q Consensus       220 ~d~~~~~~--~~~~~-~~~~~i~~l~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~v~~i~~~~  290 (482)
                      +++.+++.  ...+. ........+.|+|||++|+..+.   ...|.++|+.++. ..  ..+..  .......++.|+.
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~s~~~~~  329 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP--REKGVRYDVQMHG  329 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC--CCTTCCEEEEEET
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec--CCCCceEEEeeee
Confidence            99887642  22332 22334668899999999887653   3458889988752 12  22211  2334455555544


Q ss_pred             CCCCEEEEEeCC----CeEEEEEcCC-cEEEE-ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         291 KNTEHFVVCNKT----NTVVIMNMQG-QIVRS-LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       291 ~~~~~l~~~~~d----~~i~i~d~~~-~~~~~-~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                       +..+++....+    ..|..+++.. ..... +..+. ....+..+.+. .+.++++...++..++|.++
T Consensus       330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d  397 (751)
T 2xe4_A          330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM  397 (751)
T ss_dssp             -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred             -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence             43555555544    2566666642 22222 22121 12244556665 33455677778877766543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.44  E-value=0.00039  Score=62.62  Aligned_cols=233  Identities=11%  Similarity=0.075  Sum_probs=128.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      ...+.++.|++ +..++. +..+.|.. ..+.|+.-.......     .+...+..+.+.+++..++++ .+|.|.. ..
T Consensus        79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~  148 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDP-----KLPGSPRLIKALGNGSAEMIT-NVGAIYR-TK  148 (327)
T ss_dssp             CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCT-----TCSSCEEEEEEEETTEEEEEE-TTCCEEE-ES
T ss_pred             CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECcccc-----CCCCCeEEEEEECCCCEEEEe-CCccEEE-Ec
Confidence            44688999986 444444 45564443 333343222211110     012346778777777655554 4565422 12


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE-EeC--CCCceEEEeeccccceeEEEEcCCCCEEEEEeCC
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI-HGL--KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD  256 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i-~d~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d  256 (482)
                      ..++.-..........+..+++.+++.+++++. +|.+.. .|-  .+.+.+.  ......+..+.+.++++.+ .++.+
T Consensus       149 DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~  224 (327)
T 2xbg_A          149 DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNG  224 (327)
T ss_dssp             STTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETT
T ss_pred             CCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCC
Confidence            234333333344556789999999888776665 454444 342  2333332  2345678899999988755 55567


Q ss_pred             CcEEEEECCCCceeeeeecc-CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEc
Q psy8448         257 GTVKMWNLKTTECTSTFKSL-GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       257 g~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      |.+++.+...++.-..+... ......+..+.+.+++ .++++ +.++.+ ++.. .|+....+.........+.++.|.
T Consensus       225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN-EVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS-CEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred             ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC-EEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence            88777653334332222211 0122357889898865 55554 446766 3444 355554444221113456788887


Q ss_pred             CCCCEEEEEeCCcEEE
Q psy8448         335 PRGEWIYCVGEDMVLV  350 (482)
Q Consensus       335 ~~g~~l~~~~~dg~i~  350 (482)
                      +++ .+++++.+|.|.
T Consensus       302 ~~~-~~~~~G~~G~i~  316 (327)
T 2xbg_A          302 SPD-QGFILGQKGILL  316 (327)
T ss_dssp             ETT-EEEEECSTTEEE
T ss_pred             CCC-ceEEEcCCceEE
Confidence            544 566778889877

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.41  E-value=0.00061  Score=63.17  Aligned_cols=209  Identities=11%  Similarity=0.027  Sum_probs=127.9

Q ss_pred             CCCcEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCc----eeeccccccccccccccccEEEEEEcCC-CCEEEEEeCCC
Q psy8448          99 SKSHVECARFSPDGQYLI-TGSVDGFIEVWNFTTGK----IRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQSG  172 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg  172 (482)
                      .-..+..++|++.+..|. +-...+.|+.+++....    ....+...        -.....+++.+. +++.++-...+
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~--------~~~p~glavD~~~~~lY~~d~~~~  181 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--------IQAPDGLAVDWIHSNIYWTDSVLG  181 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS--------CSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC--------CCCcccEEEEecCCceEEEECCCC
Confidence            345788999998655554 44467889999886522    11111101        245788999884 44444445678


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  250 (482)
                      .|.+.++........+ .........+++.|.+..|+.+..  .+.|...++............-.....|++++++..|
T Consensus       182 ~I~~~~~~g~~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~l  260 (400)
T 3p5b_L          182 TVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL  260 (400)
T ss_dssp             EEEEECTTTCSEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred             eEEEEeCCCCceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEE
Confidence            8999998755443333 334455789999997767766653  3689999986544333333333567899999887777


Q ss_pred             EEEe-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448         251 LSAS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS  319 (482)
Q Consensus       251 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~  319 (482)
                      +.+. ..+.|..+|+..... ..+......-.....+++.  +..++++-...+.|..++. +|+.+..+.
T Consensus       261 Y~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          261 YWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            7665 467899999875433 3332111112233466663  3256666667778888885 665555544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00049  Score=64.74  Aligned_cols=243  Identities=12%  Similarity=0.060  Sum_probs=141.4

Q ss_pred             cEEEEEEcC-CCCEE-EEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEE-------cCCCCEEEEEeCCC
Q psy8448         102 HVECARFSP-DGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-------SRDSEMLASGSQSG  172 (482)
Q Consensus       102 ~v~~~~~s~-~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~-------~~~~~~l~~~~~dg  172 (482)
                      ....|+|+| +...| ++....+.|++.|+.++...........     .-.....++|       +++++.|+++...+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-----~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-----PTNRIRSIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-----SCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-----ccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence            467899998 34444 4444456799999888776544332110     1246899999       99999777766543


Q ss_pred             -------cEEEEEcCC-CeEe-----EEeecccCCCeEEEEEccCCCE-EEEEECCCeEEEEeCC-------CCce----
Q psy8448         173 -------KVKIWKIAT-GQCL-----RKLEKAHSLGVTCIQFSRDNSQ-ILTASFDTYVRIHGLK-------SGKM----  227 (482)
Q Consensus       173 -------~i~iwd~~~-~~~~-----~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~i~d~~-------~~~~----  227 (482)
                             .|.+++... +...     ..+. . -.....++++|++.. +++-..++.|..+|+.       ++..    
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIA-A-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEE-E-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CCcccCceEEEEecCCCCceeecccceeec-c-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                   266665333 2221     1221 1 123457788995444 4555577789999987       4543    


Q ss_pred             -------EEE-ee-ccccceeEEEEcCCCCEEEEE-eCCCcEEEEECC--CCcee--eeeecc---CCC---------cc
Q psy8448         228 -------LKE-FR-GHSSFVNDITFTADGHSVLSA-SSDGTVKMWNLK--TTECT--STFKSL---GAS---------DI  281 (482)
Q Consensus       228 -------~~~-~~-~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~~--~~~~~--~~~~~~---~~~---------~~  281 (482)
                             ... +. +.......|+|+|+++.|+.+ +..+.|+.++..  .+...  ..+...   .+.         -.
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence                   112 11 223446799999999965554 456788886653  33210  122110   000         01


Q ss_pred             cee-EEEEc-------CCCCCEEEEEeCCCeEEEEEcCCcEEEEecCC-c------------c--------cCcCEEEEE
Q psy8448         282 AVN-SIHLL-------PKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSG-K------------R--------EGGDFLCCT  332 (482)
Q Consensus       282 ~v~-~i~~~-------~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~------------~--------~~~~v~~~~  332 (482)
                      ... .++..       +.+ .++++-.....|+.++.+|. +.++... .            .        .-.....++
T Consensus       373 ~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa  450 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV  450 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred             CCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence            123 34443       334 67777777889999997774 4444321 0            0        113467899


Q ss_pred             EcCC-CCEEEEEeCCcEEEEEe
Q psy8448         333 TSPR-GEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       333 ~~~~-g~~l~~~~~dg~i~iw~  353 (482)
                      ++++ |.+.++=..+..|+.++
T Consensus       451 vd~~~g~lyVaD~~N~rIrki~  472 (496)
T 3kya_A          451 YDDVKEMFYVHDQVGHTIRTIS  472 (496)
T ss_dssp             EETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEEEeCCCCEEEEEE
Confidence            9997 66666666778888443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.39  E-value=0.0002  Score=67.18  Aligned_cols=194  Identities=7%  Similarity=0.017  Sum_probs=117.9

Q ss_pred             cEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCC
Q psy8448         152 AVMSLAYSRD--SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKS  224 (482)
Q Consensus       152 ~i~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~  224 (482)
                      ....++|.|+  +..|+.+...+.|+.+|+.++......  ........+++++++. |+++...+     .+...+...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            4678999984  445666655489999998877665443  2445689999999999 55555322     244444322


Q ss_pred             Cce-EEEeeccccceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC
Q psy8448         225 GKM-LKEFRGHSSFVNDITFTA-DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT  302 (482)
Q Consensus       225 ~~~-~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  302 (482)
                      +.. ...+. .......++++| ++.++++-..++.|+.+|..++.....+... .....-..++++|++..++++-...
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCC
Confidence            211 11122 234457789999 6665556556788999999877653333211 1122234699999994466676777


Q ss_pred             CeEEEEEcCC--cE---EEEecCC---c---------ccCcCEEEEEE---------cCCCCEEEEEeCCcEEE
Q psy8448         303 NTVVIMNMQG--QI---VRSLSSG---K---------REGGDFLCCTT---------SPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       303 ~~i~i~d~~~--~~---~~~~~~~---~---------~~~~~v~~~~~---------~~~g~~l~~~~~dg~i~  350 (482)
                      +.|..++.++  ..   ...+...   .         ........+++         .++|.+.++-..++.|+
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~  368 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR  368 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence            8999988742  11   1111111   0         01123567888         67776666666677777

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.35  E-value=4.8e-05  Score=74.25  Aligned_cols=193  Identities=18%  Similarity=0.208  Sum_probs=120.4

Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CeEEEEecCCCceeeccccccccc--cccccccEEEEEE
Q psy8448         105 CARFSPDGQYLITGSV--------------------D----GFIEVWNFTTGKIRKDLKYQAQDN--FMLMEEAVMSLAY  158 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~~--------------------d----g~v~iwd~~~~~~~~~~~~~~~~~--~~~h~~~i~~l~~  158 (482)
                      .++++|+..+++.+..                    |    +.|..+|..+|+..-.++......  +.....++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4677787777776653                    2    589999999999877655432111  001112332 222


Q ss_pred             c-CCCC---EEEEEeCCCcEEEEEcCCCeEeEEeecccC------------CCe--------------------------
Q psy8448         159 S-RDSE---MLASGSQSGKVKIWKIATGQCLRKLEKAHS------------LGV--------------------------  196 (482)
Q Consensus       159 ~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~v--------------------------  196 (482)
                      . .+|+   .++.++.+|.++++|..+++.+..+.....            .++                          
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 4663   788899999999999999998876632210            000                          


Q ss_pred             ------EEEEEccCCCEEEEEE---------------------------------CCCeEEEEeCCCCceEEEeeccccc
Q psy8448         197 ------TCIQFSRDNSQILTAS---------------------------------FDTYVRIHGLKSGKMLKEFRGHSSF  237 (482)
Q Consensus       197 ------~~i~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~  237 (482)
                            ..++++|+...+++..                                 .+|.|..||+.+++.+.+..... +
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~  487 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P  487 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence                  1346666555555432                                 25789999999999887766332 2


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         238 VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      +..-.....+.+++.++.||.++.||.++++.+..++....  ..-.-+.+..+|..++++.+.
T Consensus       488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g--~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG--IVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCCEEEEETTEEEEEEEEC
T ss_pred             CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC--cccCceEEEECCEEEEEEEcc
Confidence            22211222467788899999999999999999988874221  111225555666444444433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.35  E-value=3.6e-06  Score=84.06  Aligned_cols=216  Identities=10%  Similarity=0.007  Sum_probs=125.6

Q ss_pred             CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC----CeEeEEeecccCCC
Q psy8448         121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIAT----GQCLRKLEKAHSLG  195 (482)
Q Consensus       121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~~~~~~  195 (482)
                      .+.|+..++...+....+..         -..+..++|.+.+..|+.+. ..+.|+.+++..    ......+ ......
T Consensus       385 ~~~I~~id~~~~~~~~~~~~---------~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~  454 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQA  454 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC---------CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--
T ss_pred             ccceEEEeCCCCcceeeecc---------CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCC
Confidence            35688888776654433221         13467889998776666664 557899999875    2211111 111223


Q ss_pred             eEEEEEccCCCEE-EEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeee
Q psy8448         196 VTCIQFSRDNSQI-LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTECTST  272 (482)
Q Consensus       196 v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~  272 (482)
                      ...+++.+.+..| ++-...+.|.++++........+.........|+++|.+.+|+.+..  .+.|..+++.... ...
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~  533 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS  533 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeE
Confidence            4567887644444 44455678999998755443333333345688999997665655443  2678888775432 222


Q ss_pred             eeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       273 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +..  ..-...+.|+++|++..++++-+..+.|..+++.+.....+............+++..+ .++++....+.|.
T Consensus       534 l~~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~  608 (699)
T 1n7d_A          534 LVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIF  608 (699)
T ss_dssp             ESC--SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEE
T ss_pred             EEe--CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEE
Confidence            211  12234578999998767888877888999999976554444432111222344555443 3333444556777

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.31  E-value=0.00084  Score=59.99  Aligned_cols=206  Identities=11%  Similarity=0.074  Sum_probs=126.5

Q ss_pred             CcEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEE-EEEeCCCcEEEEE
Q psy8448         101 SHVECARFSPDG-QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML-ASGSQSGKVKIWK  178 (482)
Q Consensus       101 ~~v~~~~~s~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~~~~~dg~i~iwd  178 (482)
                      ..+..++|++.+ .++.+-...+.|..+++..+.....+....       -.....+++.+.+..| ++-...+.|.+++
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-------l~~p~glavd~~~g~ly~~d~~~~~I~~~~  107 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-------LLSPDGLACDWLGEKLYWTDSETNRIEVSN  107 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-------CSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-------CCCccEEEEEcCCCeEEEEECCCCEEEEEE
Confidence            356789999854 444555567889999987653211111110       1346688888754444 4445667899999


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-C
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-S  255 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~  255 (482)
                      +..... ..+..........+++.|.+..|+.+..  .+.|...++............-.....|++++++..|+.+. .
T Consensus       108 ~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~  186 (318)
T 3sov_A          108 LDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK  186 (318)
T ss_dssp             TTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC
Confidence            865432 3332334456789999997667766653  57899988864332222222334568999999777676665 4


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS  319 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~  319 (482)
                      .+.|..+|+.... ...+..  ........+++..+  .++.+-...+.|..++. +|+....+.
T Consensus       187 ~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          187 LNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEcCCCCc-eEEEec--CCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCceEEEe
Confidence            6789999987433 222221  12233456666532  56666666788888887 565544443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.30  E-value=0.00058  Score=60.07  Aligned_cols=164  Identities=12%  Similarity=0.159  Sum_probs=110.3

Q ss_pred             cEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceeeccccccccccccccccEEEEEE---cCCCCEEEEEe--------
Q psy8448         102 HVECARFSPDGQYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY---SRDSEMLASGS--------  169 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~---~~~~~~l~~~~--------  169 (482)
                      --.+++|++....|..++ ..++|..|+...+..... .......-..-...+..|.|   .|+++++++..        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            345788988555665555 789999999876543332 22110000000124689999   68877776543        


Q ss_pred             -----CCCcEEEEEcC---CCeEeEEeecc------------cCCCeEEEEEccCCCEEEEEECC-CeEEEEeCCCCceE
Q psy8448         170 -----QSGKVKIWKIA---TGQCLRKLEKA------------HSLGVTCIQFSRDNSQILTASFD-TYVRIHGLKSGKML  228 (482)
Q Consensus       170 -----~dg~i~iwd~~---~~~~~~~~~~~------------~~~~v~~i~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~  228 (482)
                           .+..+..+|+.   +++.+......            .......++..++|+..++++.. +.|..++.... .+
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~  171 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TV  171 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CE
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EE
Confidence                 25779999998   77766554311            11248899999999999989888 88888887544 33


Q ss_pred             EEee------ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy8448         229 KEFR------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT  267 (482)
Q Consensus       229 ~~~~------~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~  267 (482)
                      ..+.      ......+.|+++|+++.|++....|.|..+|++..
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            3221      11223679999999999998877999999998853

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.28  E-value=0.0026  Score=62.49  Aligned_cols=222  Identities=8%  Similarity=-0.034  Sum_probs=138.8

Q ss_pred             EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeeccc
Q psy8448         114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAH  192 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~  192 (482)
                      +|+.+ ..+.|+..++.+......+....       -..+..++|++.+..|+.+. .++.|..+++........+ ...
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~-------~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g   78 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTG-------VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFG   78 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCS-------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSS
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCC-------CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCC
Confidence            45444 35679999998655433332221       24588999999766666554 6788999998655433333 222


Q ss_pred             CCCeEEEEEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCce
Q psy8448         193 SLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTEC  269 (482)
Q Consensus       193 ~~~v~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~  269 (482)
                      ......+++.+.+..|+.+ ...+.|.+.++........+...-.....|+++|....|+....  .+.|...++.....
T Consensus        79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER  158 (628)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce
Confidence            2456788998765555544 45678999998654432223234456789999996666666653  56788888875443


Q ss_pred             eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe-CCcE
Q psy8448         270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-EDMV  348 (482)
Q Consensus       270 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~  348 (482)
                      ....    ..-.....+++.+++..++++-...+.|..++++|.....+...   ......+++.. + .|+... ..+.
T Consensus       159 ~~l~----~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~---l~~P~glav~~-~-~ly~tD~~~~~  229 (628)
T 4a0p_A          159 TTLV----PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD---LPHPFGLTQYQ-D-YIYWTDWSRRS  229 (628)
T ss_dssp             EEEE----CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---CSCEEEEEEET-T-EEEEEETTTTE
T ss_pred             EEEE----CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeecc---CCCceEEEEEC-C-EEEEecCCCCE
Confidence            3222    22345689999998756777777788999999965433333322   23345777764 3 455444 4677


Q ss_pred             EEEEe
Q psy8448         349 LVVRL  353 (482)
Q Consensus       349 i~iw~  353 (482)
                      |...+
T Consensus       230 I~~~d  234 (628)
T 4a0p_A          230 IERAN  234 (628)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.28  E-value=0.00082  Score=61.11  Aligned_cols=231  Identities=12%  Similarity=0.110  Sum_probs=122.5

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---CCEEEEEeC-C-----
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGSQ-S-----  171 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~~-d-----  171 (482)
                      .....++|.|+|+++++ ..+|.|++++  +++........   ...........|+++|+   +..|+++.. .     
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            35679999999986655 5569999998  44321111111   11111356899999998   555555443 2     


Q ss_pred             CcEEEEEcCCCe-----EeEE-ee--cccCCCeEEEEEccCCCEEEEEEC-------------CCeEEEEeCCCC-----
Q psy8448         172 GKVKIWKIATGQ-----CLRK-LE--KAHSLGVTCIQFSRDNSQILTASF-------------DTYVRIHGLKSG-----  225 (482)
Q Consensus       172 g~i~iwd~~~~~-----~~~~-~~--~~~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-----  225 (482)
                      +.|..++...+.     .+.. +.  .........++|.|+|.+.++.+.             .|.|.-++....     
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            578888876432     1111 21  011112468999999965555432             256777776430     


Q ss_pred             -------ceEEEe-eccccceeEEEEcC-CCCEEEEEeCCCcE------EEEECCCCce---------------eeeeec
Q psy8448         226 -------KMLKEF-RGHSSFVNDITFTA-DGHSVLSASSDGTV------KMWNLKTTEC---------------TSTFKS  275 (482)
Q Consensus       226 -------~~~~~~-~~~~~~i~~l~~~~-~~~~l~~~~~dg~i------~i~d~~~~~~---------------~~~~~~  275 (482)
                             .....+ .++ .....++|+| ++.++++-.....+      .+.-+..+..               ......
T Consensus       185 pf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~  263 (352)
T 2ism_A          185 PFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF  263 (352)
T ss_dssp             TTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             cccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence                   011111 123 2357899999 66655543332321      1222222220               000000


Q ss_pred             cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcE-----EEEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448         276 LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQI-----VRSLSSGKREGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       276 ~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~-----~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      . ........++| .++ .++++....+.|...+++  +..     ...+..   ....+..+++.|||.+.++..
T Consensus       264 ~-~~~~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~---~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          264 W-PQGFPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALS---GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             C-TTCCCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE---SSCCEEEEEECTTSCEEEEEC
T ss_pred             c-CCCCCCcceEE-ECC-EEEEEECCCCEEEEEEECCCCcceeecchheecc---cCCCeeEEEECCCCcEEEEEe
Confidence            0 11223456777 344 566666667788887773  221     122221   145789999999998776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.21  E-value=0.00075  Score=59.92  Aligned_cols=184  Identities=11%  Similarity=0.226  Sum_probs=118.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccC----CC---EEEEEEC---CCeEEEEeCC--CCceE
Q psy8448         161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD----NS---QILTASF---DTYVRIHGLK--SGKML  228 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~----~~---~l~~~~~---dg~i~i~d~~--~~~~~  228 (482)
                      ...+++.....+-+.+||+ +++.+..+.   ...+..+..-|+    |+   ++++...   ++.|.+|++.  ++ .+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TL  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ce
Confidence            3456666677889999999 888888773   245666666552    32   2333333   4789999763  33 34


Q ss_pred             EEeec------cc-cceeEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCceeeeeeccCCCccceeEEEEcC
Q psy8448         229 KEFRG------HS-SFVNDITF--TAD-GH-SVLSASSDGTVKMWNLK-------TTECTSTFKSLGASDIAVNSIHLLP  290 (482)
Q Consensus       229 ~~~~~------~~-~~i~~l~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~~~v~~i~~~~  290 (482)
                      ..+..      .. ..+..+|+  +|. +. ++++...+|.+..|++.       +.+.++++.    ....+..+...+
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~----lgsq~EgcvvDd  189 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK----MNSQTEGMAADD  189 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE----CSSCEEEEEEET
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec----CCCCcceEEEcC
Confidence            44421      11 45677887  774 43 67888889999999883       234556664    234677888888


Q ss_pred             CCCCEEEEEeCCCeEEEEEcC------CcEEEEecCCcccCcCEEEEEE--cCCCC-EEEEEe-CCcEEEEEeeh
Q psy8448         291 KNTEHFVVCNKTNTVVIMNMQ------GQIVRSLSSGKREGGDFLCCTT--SPRGE-WIYCVG-EDMVLVVRLIQ  355 (482)
Q Consensus       291 ~~~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~~~~~~~v~~~~~--~~~g~-~l~~~~-~dg~i~iw~~~  355 (482)
                      .. ..|+++-.+..|..++.+      ++.+..+.... -...+..+++  .++++ +|++++ .++...+|+.+
T Consensus       190 ~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~-l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          190 EY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS-BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCc-cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            77 788888888777777753      23444443221 1346777877  56666 677766 56688877653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.20  E-value=0.00086  Score=59.56  Aligned_cols=195  Identities=13%  Similarity=0.198  Sum_probs=123.2

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC----CCE--EEEE-e-C--CCcEEEEEcC
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD----SEM--LASG-S-Q--SGKVKIWKIA  180 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~----~~~--l~~~-~-~--dg~i~iwd~~  180 (482)
                      ...+++.....+-+.+||+ +|+.+..+..          ..++.+..-|+    ++.  ++.+ . .  +++|.+|++.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT----------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC----------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC----------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            3455666667788999999 7887776642          24555555552    222  3333 3 3  5789999773


Q ss_pred             --CCeEeEEeec---c--cC-CCeEEEEE--ccC-CC-EEEEEECCCeEEEEeCC-------CCceEEEeeccccceeEE
Q psy8448         181 --TGQCLRKLEK---A--HS-LGVTCIQF--SRD-NS-QILTASFDTYVRIHGLK-------SGKMLKEFRGHSSFVNDI  241 (482)
Q Consensus       181 --~~~~~~~~~~---~--~~-~~v~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~i~~l  241 (482)
                        ++. +..+..   .  .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++++.. .+.+..+
T Consensus       108 p~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egc  185 (355)
T 3amr_A          108 GKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGM  185 (355)
T ss_dssp             TTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEE
T ss_pred             CCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceE
Confidence              333 444311   1  11 44566777  664 43 68888889999999883       2345666663 4578899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECC-----CCceeeeeeccCCCccceeEEEE--cCCCCCEEEEEe-CCCeEEEEEcC--
Q psy8448         242 TFTADGHSVLSASSDGTVKMWNLK-----TTECTSTFKSLGASDIAVNSIHL--LPKNTEHFVVCN-KTNTVVIMNMQ--  311 (482)
Q Consensus       242 ~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~~~~-~d~~i~i~d~~--  311 (482)
                      ..++....|+.+-.+.-|..|+.+     +++.+..+. .......+..|++  .+++..++++++ .++++.+||..  
T Consensus       186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~  264 (355)
T 3amr_A          186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK  264 (355)
T ss_dssp             EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence            999988999999998777777755     233443332 1122346788887  455533555555 67799999994  


Q ss_pred             CcEEEEec
Q psy8448         312 GQIVRSLS  319 (482)
Q Consensus       312 ~~~~~~~~  319 (482)
                      .+.+..+.
T Consensus       265 ~~~vg~f~  272 (355)
T 3amr_A          265 NKYVADFR  272 (355)
T ss_dssp             CCEEEEEE
T ss_pred             CcEEEEEE
Confidence            45566664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.19  E-value=9.4e-05  Score=65.03  Aligned_cols=162  Identities=8%  Similarity=0.094  Sum_probs=111.6

Q ss_pred             CCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeecc-------ccceeEEEE---cCCCCEEEEEe-------
Q psy8448         193 SLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGH-------SSFVNDITF---TADGHSVLSAS-------  254 (482)
Q Consensus       193 ~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~l~~---~~~~~~l~~~~-------  254 (482)
                      ...-.+++|++....+..++ ..+.|..||...+.........       ...+..|.|   .|+++++++..       
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            33456789988666666666 7899999999765443332211       114679999   68877777544       


Q ss_pred             ------CCCcEEEEECC---CCceeeeeeccCC----------CccceeEEEEcCCCCCEEEEEeCC-CeEEEEEcCCcE
Q psy8448         255 ------SDGTVKMWNLK---TTECTSTFKSLGA----------SDIAVNSIHLLPKNTEHFVVCNKT-NTVVIMNMQGQI  314 (482)
Q Consensus       255 ------~dg~i~i~d~~---~~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~~l~~~~~d-~~i~i~d~~~~~  314 (482)
                            .+..|..||+.   +++.+........          .......++..++| +.+++++.. +.|...+.+|+.
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKT  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE
Confidence                  25779999999   7776554431100          12357899999999 888888888 898888887775


Q ss_pred             EEEecCCc---ccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         315 VRSLSSGK---REGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       315 ~~~~~~~~---~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +..+....   ......+.++++|+|+.|++....|.+..+|+.
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            54432111   112235689999999999988779999977765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.16  E-value=0.001  Score=65.37  Aligned_cols=219  Identities=9%  Similarity=0.016  Sum_probs=125.7

Q ss_pred             CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEE
Q psy8448         121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCI  199 (482)
Q Consensus       121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i  199 (482)
                      ...|+..++........+....       -..+..++|++.+..|+.+. ..+.|..+++........+..........+
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~-------~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl   89 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGG-------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   89 (619)
T ss_dssp             SSBEEEECCC---------CBC-------CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred             cccEEEEeCCCCcceEEEEEcC-------CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence            4668888887543111111111       24578999999777676665 467888898865532222222333568899


Q ss_pred             EEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeeeeecc
Q psy8448         200 QFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGTVKMWNLKTTECTSTFKSL  276 (482)
Q Consensus       200 ~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~  276 (482)
                      ++.+.+..|+.+ ...+.|.+.++........+...-.....|+++|.+..|+.+..  .+.|...++..........  
T Consensus        90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~--  167 (619)
T 3s94_A           90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN--  167 (619)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--
T ss_pred             EEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe--
Confidence            999866555554 55689999998654433333334456789999997666666653  4677777776433222221  


Q ss_pred             CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEE-eCCcEEEEEe
Q psy8448         277 GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV-GEDMVLVVRL  353 (482)
Q Consensus       277 ~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~-~~dg~i~iw~  353 (482)
                       ..-...+.+++.+++..++++-...+.|..++++|.....+....  ......+++..+  .|+.. ...+.|...+
T Consensus       168 -~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~--~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          168 -SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED--ILYWTDWSTHSILACN  240 (619)
T ss_dssp             -SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred             -CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence             223456889999987566677667788999999876555543311  112245666554  44443 3455555433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.13  E-value=0.0036  Score=63.03  Aligned_cols=207  Identities=10%  Similarity=0.016  Sum_probs=125.5

Q ss_pred             CCcEEEEEEcCCCCE-EEEEeCCCeEEEEecCCCce----eeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCc
Q psy8448         100 KSHVECARFSPDGQY-LITGSVDGFIEVWNFTTGKI----RKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGK  173 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~-l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~  173 (482)
                      ...+..|+|++.... +++-...+.|+.+++.....    ...+...        -.....|++.+.+..|+.+ ...+.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~--------l~~P~GLAvD~~~~~LY~tD~~~~~  494 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--------IQAPDGLAVDWIHSNIYWTDSVLGT  494 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS--------CSCCCEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC--------CCCcceeeeeecCCcEEEEecCCCe
Confidence            456788999985444 45555667888888865321    1111101        2356788898866555554 46789


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC--CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD--TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      |.+.++..... ..+..........|++.|.+.+|+.+...  +.|...++........+...-.....|++++.+..|+
T Consensus       495 I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          495 VSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             EEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             EEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEE
Confidence            99999875443 33323344568899999976677666532  6899999865444333333345688999998777777


Q ss_pred             EEe-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448         252 SAS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL  318 (482)
Q Consensus       252 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~  318 (482)
                      .+. ..+.|..+++........+.. ...-.....|++..+  .++++-...+.|...+. +|+.+..+
T Consensus       574 waD~~~~~I~~~d~dG~~~~~v~~~-~~~l~~P~glav~~~--~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          574 WVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEETT--EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEeCCCCcEEEEecCCCceEEEecC-CCccCCCCEEEEeCC--EEEEEECCCCEEEEEeCCCCcceEEe
Confidence            665 456799999865443333221 011122345665432  56666666788888875 55544444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.002  Score=60.66  Aligned_cols=158  Identities=12%  Similarity=0.080  Sum_probs=99.7

Q ss_pred             cEEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCCeEeEEeecc--cCCCeEEEEE-------ccCCCEEEEEECCC-----
Q psy8448         152 AVMSLAYSR-DSEMLASGS-QSGKVKIWKIATGQCLRKLEKA--HSLGVTCIQF-------SRDNSQILTASFDT-----  215 (482)
Q Consensus       152 ~i~~l~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~i~~-------~~~~~~l~~~~~dg-----  215 (482)
                      ....|+|.| +...|+.+. ..+.|++.|+.++.........  .......++|       ++++.+|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 344455554 4467999998877766544221  1235889999       99999777776554     


Q ss_pred             --eEEEEeCCC-CceE-----EEeeccccceeEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCce----------
Q psy8448         216 --YVRIHGLKS-GKML-----KEFRGHSSFVNDITFTAD-GHSVLSASSDGTVKMWNLK-------TTEC----------  269 (482)
Q Consensus       216 --~i~i~d~~~-~~~~-----~~~~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~-------~~~~----------  269 (482)
                        .|.+++... ++..     ..+.. ......++++|+ +.++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              366776443 2221     22222 224567889995 4555556677889999987       5543          


Q ss_pred             -eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         270 -TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       270 -~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                       ...+... ........++|+|++..++++-+....|+.++.+
T Consensus       299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence             1121111 2234457899999994356666777899997764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.13  E-value=0.0046  Score=56.09  Aligned_cols=230  Identities=13%  Similarity=0.110  Sum_probs=124.9

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCc-eeeccccccccccccccccEEEEEEcCC---CCEEEEEeC----C-
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGK-IRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGSQ----S-  171 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~~----d-  171 (482)
                      .....++|.|+|+++++ ..+|.|++++ .+++ ....+.     ...........|+++|+   +..|.++..    + 
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~-----v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFD-----VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG  101 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccc-----eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence            45789999999985555 5569999997 3444 111111     01111356889999997   455555443    2 


Q ss_pred             ---CcEEEEEcCCC-------eEe-EEeecccCCCeEEEEEccCCCEEEEEEC-------------CCeEEEEeCCCC--
Q psy8448         172 ---GKVKIWKIATG-------QCL-RKLEKAHSLGVTCIQFSRDNSQILTASF-------------DTYVRIHGLKSG--  225 (482)
Q Consensus       172 ---g~i~iwd~~~~-------~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--  225 (482)
                         ..|..|+....       +.+ ..+..........++|.|+|.++++.+.             .|.|.-++....  
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence               56777876544       111 1121111112467999999976665432             256666665432  


Q ss_pred             ------c-eEEEeeccccceeEEEEcC-CCCEEEEEeCCC---cEEEEECCCCce---------------eeeeeccCCC
Q psy8448         226 ------K-MLKEFRGHSSFVNDITFTA-DGHSVLSASSDG---TVKMWNLKTTEC---------------TSTFKSLGAS  279 (482)
Q Consensus       226 ------~-~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~---------------~~~~~~~~~~  279 (482)
                            . .+. -.++. ....++|+| +++++++-....   .|.+..  .+..               ..........
T Consensus       182 ~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~  257 (354)
T 3a9g_A          182 ADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE  257 (354)
T ss_dssp             TTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred             CCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence                  0 111 12333 356899999 666444432221   133332  2210               0011001011


Q ss_pred             ccceeEEEEc-------CCCCCEEEEEeCCCeEEEEEcCC--cEE--EEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448         280 DIAVNSIHLL-------PKNTEHFVVCNKTNTVVIMNMQG--QIV--RSLSSGKREGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       280 ~~~v~~i~~~-------~~~~~~l~~~~~d~~i~i~d~~~--~~~--~~~~~~~~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      ......+++.       .++ .++++....+.|...++.+  ...  ..+...  ....+..+++.|||.+.++..
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKN--VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTT--TSCCEEEEEECTTSCEEEEEC
T ss_pred             CcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccC--CCCCeeEEEECCCCcEEEEEe
Confidence            2346777873       344 6666666777888888853  332  233221  145789999999997666654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.10  E-value=0.0011  Score=59.69  Aligned_cols=212  Identities=16%  Similarity=0.205  Sum_probs=119.5

Q ss_pred             cEEEEEEcCCCCEEEEEe------------CCCeEEEEecCCCc-eeeccccccccccccccccEEEEEEcC--CCC-EE
Q psy8448         102 HVECARFSPDGQYLITGS------------VDGFIEVWNFTTGK-IRKDLKYQAQDNFMLMEEAVMSLAYSR--DSE-ML  165 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~------------~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~-~l  165 (482)
                      ....+...|+|..+++++            .+|.|.++|.++.. ....+..... .+....-....+.+.+  ++. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~-~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN-TLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS-SCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC-CCCcCceeeeeeEEEECCCCcEEE
Confidence            455667788876555542            68999999987432 1122222110 0111123566777765  343 45


Q ss_pred             EEEe-C--CCcEEEEEcCCCe----EeEEeecccCCCeEEEEEccCCCEEEEEE-----------------CCCeEEEEe
Q psy8448         166 ASGS-Q--SGKVKIWKIATGQ----CLRKLEKAHSLGVTCIQFSRDNSQILTAS-----------------FDTYVRIHG  221 (482)
Q Consensus       166 ~~~~-~--dg~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-----------------~dg~i~i~d  221 (482)
                      +++. .  +..|.+|++....    .+..+....-...+.+++.++|.+.++..                 ..|.|..+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            5553 2  4678888775432    22333222234578999999998666653                 125666666


Q ss_pred             CCCCceEEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcC-CCCCEEEEE
Q psy8448         222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP-KNTEHFVVC  299 (482)
Q Consensus       222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~  299 (482)
                      .  ++. ..+...-...+.++|+||++.|+.+. ..+.|..|++.....+...+.. ......-.+++.+ +| .+.+++
T Consensus       210 ~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G-~lwva~  284 (355)
T 3sre_A          210 P--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG-DLWVGC  284 (355)
T ss_dssp             T--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC-CEEEEE
T ss_pred             C--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC-cEEEEe
Confidence            5  332 22332344578999999998887765 4688999998642212111111 1234567888888 47 666655


Q ss_pred             eCC-CeEEEEEcC---CcEEEEec
Q psy8448         300 NKT-NTVVIMNMQ---GQIVRSLS  319 (482)
Q Consensus       300 ~~d-~~i~i~d~~---~~~~~~~~  319 (482)
                      ..+ +.|..|+..   +..+..+.
T Consensus       285 ~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          285 HPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             ESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             cCCceEEEEECCCCCCCCEEEEEE
Confidence            533 344445543   44555544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.92  E-value=0.0022  Score=56.87  Aligned_cols=218  Identities=12%  Similarity=0.086  Sum_probs=111.5

Q ss_pred             CCCEEEEEe-CC-----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEEc
Q psy8448         111 DGQYLITGS-VD-----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIWKI  179 (482)
Q Consensus       111 ~~~~l~s~~-~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~  179 (482)
                      ++.+++.|+ .+     ..+.+||+.+++-........  .    ......+.  .++..++.|+.+     ..+.+||+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~----r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~   85 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITR--K----RRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDY   85 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSS--C----CBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEET
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCCh--h----hccccEEE--ECCEEEEEcCCCCCccCceEEEEEC
Confidence            445666666 22     368999988776443222111  0    11122222  256677777754     46899998


Q ss_pred             CCCe---EeEEeeccc-CCCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCceEE--EeeccccceeEEEEcCCCC
Q psy8448         180 ATGQ---CLRKLEKAH-SLGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       180 ~~~~---~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~  248 (482)
                      .+++   ....-.... ......+.+  ++..++.|+.+     ..+.+||+.+.+-..  .+......-.++.+  +++
T Consensus        86 ~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~  161 (301)
T 2vpj_A           86 TADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGV  161 (301)
T ss_dssp             TCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTE
T ss_pred             CCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCE
Confidence            8765   322211111 112222222  56666776643     368899988765322  22211111122222  566


Q ss_pred             EEEEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEe
Q psy8448         249 SVLSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSL  318 (482)
Q Consensus       249 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~  318 (482)
                      .++.|+.+     ..+.+||+.+.+-... ............+.+  ++ .+++.|+.+     ..+.+||........+
T Consensus       162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  237 (301)
T 2vpj_A          162 IYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTV  237 (301)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             EEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence            67776654     4589999988654332 111111111122222  33 677777653     4689999965555555


Q ss_pred             cCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         319 SSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       319 ~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      ............+.+  +++.++.|+.+
T Consensus       238 ~~~p~~r~~~~~~~~--~~~i~v~GG~~  263 (301)
T 2vpj_A          238 TSMTTPRCYVGATVL--RGRLYAIAGYD  263 (301)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             CCCCCcccceeEEEE--CCEEEEEcCcC
Confidence            433221222233333  56677777765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.87  E-value=0.013  Score=53.20  Aligned_cols=100  Identities=12%  Similarity=0.185  Sum_probs=62.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEe--EEee--cccCCCeEEEEEccC---CCEEEEEECC------CeEE
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL--RKLE--KAHSLGVTCIQFSRD---NSQILTASFD------TYVR  218 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~~~~~~v~~i~~~~~---~~~l~~~~~d------g~i~  218 (482)
                      ....++|.|+|+ |+++..+|.|.+++  +++..  ..+.  .........++++|+   +..|.++...      +.|.
T Consensus        32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            467999999998 45556679999998  44321  1111  112456889999998   5566555432      6788


Q ss_pred             EEeCCCCc-----eE-EEee---ccccceeEEEEcCCCCEEEEEe
Q psy8448         219 IHGLKSGK-----ML-KEFR---GHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       219 i~d~~~~~-----~~-~~~~---~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      .++...+.     .+ ..+.   ........++|.|+|.+.++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            88876432     11 1122   1112346899999997666543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.86  E-value=0.012  Score=61.90  Aligned_cols=215  Identities=11%  Similarity=0.124  Sum_probs=127.6

Q ss_pred             eEEEEecCCCceeeccccccccccccccccEEEEEEc---C-CCCEEEEEe----------CCCcEEEEEcCCCeEeEEe
Q psy8448         123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS---R-DSEMLASGS----------QSGKVKIWKIATGQCLRKL  188 (482)
Q Consensus       123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~---~-~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~  188 (482)
                      .|++.|..+.+.+..+....       .+.+.+++..   . ...+|++|+          ..|.|.+|++..++.....
T Consensus       808 ~i~lidp~t~~~i~~~~l~~-------nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~  880 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQ-------NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA  880 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCT-------TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEeCCCCeEEEEEeCCC-------CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence            35666666666555444443       2445555543   2 246888886          3478999999765544444


Q ss_pred             ecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEEC--CC
Q psy8448         189 EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL--KT  266 (482)
Q Consensus       189 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~--~~  266 (482)
                      .....+++++++-- +| +|++|- ...|++|++...+.+..-..+-..|..+.....++++++|..-..|.++..  ..
T Consensus       881 ~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~  957 (1158)
T 3ei3_A          881 EKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME  957 (1158)
T ss_dssp             EEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT
T ss_pred             EEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC
Confidence            34557788887744 44 566555 678999999876544411111112333333345788999988777766554  33


Q ss_pred             CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC--------cEEEEecCCcccCcCEEEEE---EcC
Q psy8448         267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG--------QIVRSLSSGKREGGDFLCCT---TSP  335 (482)
Q Consensus       267 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~~~~v~~~~---~~~  335 (482)
                      .+....-+.  .....++++.+..+  ..++.+..+|.+.+.....        +.+......+. ...++++.   +.+
T Consensus       958 ~~L~~~a~D--~~~~~vta~~~ld~--~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhl-G~~vt~~~~~sl~~ 1032 (1158)
T 3ei3_A          958 GNFEEIARD--FNPNWMSAVEILDD--DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL-GEFVNVFCHGSLVM 1032 (1158)
T ss_dssp             TEEEEEEEC--CSCBCEEEEEEEET--TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEEC-SSCEEEEEECCSCC
T ss_pred             CeEEEEEee--cccccEEEEEEEcc--CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeC-CCcEeeEEeeeeec
Confidence            333322222  44667888888765  4788899999999987632        22332222111 34566654   333


Q ss_pred             C---------CCEEEEEeCCcEEEEE
Q psy8448         336 R---------GEWIYCVGEDMVLVVR  352 (482)
Q Consensus       336 ~---------g~~l~~~~~dg~i~iw  352 (482)
                      .         ...++.++.+|.|.+.
T Consensus      1033 ~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A         1033 QNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp             C-------CEEEEEEEEETTSCEEEE
T ss_pred             CCCccccccccceEEEEecCCEEEEE
Confidence            2         2357788899998865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.86  E-value=9.5e-05  Score=73.86  Aligned_cols=208  Identities=11%  Similarity=0.022  Sum_probs=119.7

Q ss_pred             CcEEEEEEcCCCCEEEEE-eCCCeEEEEecCC----CceeeccccccccccccccccEEEEEEcCCC-CEEEEEeCCCcE
Q psy8448         101 SHVECARFSPDGQYLITG-SVDGFIEVWNFTT----GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS-EMLASGSQSGKV  174 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~-~~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~~~~~dg~i  174 (482)
                      ..+..++|++.+..|+.+ ...+.|+.+++..    ......+...        -.....|++.+.+ +++++-...+.|
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~--------~~~P~glavD~~~g~LY~tD~~~~~I  477 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--------IQAPDGLAVDWIHSNIYWTDSVLGTV  477 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC--------C--CCCEECCCSSSBCEECCTTTSCE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC--------CCCcceEEEEeeCCcEEEEeccCCeE
Confidence            346688999866666555 3567899998875    1111111100        1234567887644 444444566889


Q ss_pred             EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      .++++........+ .........+++.|.+.+|+.+..  .+.|..+++........+...-.....|+|+|++..|+.
T Consensus       478 ~v~d~dg~~~~~l~-~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          478 SVADTKGVKRKTLF-REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             EEEBSSSCCEEEEC-CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred             EEEecCCCceEEEE-eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEE
Confidence            99998655433333 223345678899986665655543  267888877543222222222345678999987655555


Q ss_pred             E-eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecC
Q psy8448         253 A-SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSS  320 (482)
Q Consensus       253 ~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~  320 (482)
                      + +..+.|..+++.... ...+............|++..+  .++++....+.|..++. +++.+..+..
T Consensus       557 aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             EETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred             EecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence            4 456789999987533 2222211111122334555443  56666667788999987 5666665543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.78  E-value=0.0063  Score=54.01  Aligned_cols=217  Identities=8%  Similarity=0.045  Sum_probs=112.2

Q ss_pred             CCEEEEEeC--CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCeEe
Q psy8448         112 GQYLITGSV--DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS----GKVKIWKIATGQCL  185 (482)
Q Consensus       112 ~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~  185 (482)
                      +.+++.|+.  ...+.+||..+++-...-.....      ......+.+  ++..++.|+.+    ..+.+||+.+++..
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~------r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~   83 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK------RRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWY   83 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCC------CBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcc------cceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEE
Confidence            335556654  35799999988765433221111      112222222  56677777754    57889999887643


Q ss_pred             EEeeccc-CCCeEEEEEccCCCEEEEEECC------CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCEEEEEeC-
Q psy8448         186 RKLEKAH-SLGVTCIQFSRDNSQILTASFD------TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHSVLSASS-  255 (482)
Q Consensus       186 ~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~-  255 (482)
                      ..-.... ......+.+  ++..++.|+.+      ..+.+||+.+.+-...  +......- +++. -+++.++.|+. 
T Consensus        84 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~  159 (306)
T 3ii7_A           84 SKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSL  159 (306)
T ss_dssp             EEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEE
T ss_pred             ECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCC
Confidence            3321111 111222222  66677777755      4689999987653222  11111111 2222 25666666653 


Q ss_pred             --------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEecCCc
Q psy8448         256 --------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLSSGK  322 (482)
Q Consensus       256 --------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~  322 (482)
                              -..+.+||+.+.+-... ......... .++... ++ .+++.|+.+     ..+.+||........+....
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  235 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTEL-CPMIEARKN-HGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP  235 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCS
T ss_pred             CCCCcccccceEEEeCCCCCeEEEC-CCccchhhc-ceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC
Confidence                    34588999988753322 111111111 222222 33 677776543     46889999665555554332


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         323 REGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      ........+.+  +++.++.|+.+
T Consensus       236 ~~r~~~~~~~~--~~~i~v~GG~~  257 (306)
T 3ii7_A          236 WKGVTVKCAAV--GSIVYVLAGFQ  257 (306)
T ss_dssp             CCBSCCEEEEE--TTEEEEEECBC
T ss_pred             CCccceeEEEE--CCEEEEEeCcC
Confidence            22222333334  56777788754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.78  E-value=0.021  Score=51.81  Aligned_cols=243  Identities=12%  Similarity=0.091  Sum_probs=124.2

Q ss_pred             CcEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---CCEEEEEe-C-----
Q psy8448         101 SHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGS-Q-----  170 (482)
Q Consensus       101 ~~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~-~-----  170 (482)
                      .....|+|.|+|+ +++ +...|.|++++.. +.....+.... ............++++|+   +..|..+. .     
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            3568999999998 555 4567999999853 33221111000 011112346789999995   44555443 2     


Q ss_pred             --CCcEEEEEcCCC----eEeEEeecc------cCCCeEEEEEccCCCEEEEEEC-------------CCeEEEEeCCCC
Q psy8448         171 --SGKVKIWKIATG----QCLRKLEKA------HSLGVTCIQFSRDNSQILTASF-------------DTYVRIHGLKSG  225 (482)
Q Consensus       171 --dg~i~iwd~~~~----~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~  225 (482)
                        ...|..+++...    .....+...      .......++|.|+|.+.++.+.             .|.|.-++....
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              235666666432    111111111      0112357999999955555432             246777776532


Q ss_pred             c------------eEEEe-eccccceeEEEEcC-CCCEEEEEeCC--CcEEEEECCCCcee-------------------
Q psy8448         226 K------------MLKEF-RGHSSFVNDITFTA-DGHSVLSASSD--GTVKMWNLKTTECT-------------------  270 (482)
Q Consensus       226 ~------------~~~~~-~~~~~~i~~l~~~~-~~~~l~~~~~d--g~i~i~d~~~~~~~-------------------  270 (482)
                      -            ....+ .++ .....++|+| +++ |.++...  +.=.|.-+..+...                   
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~  252 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA  252 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred             CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence            0            11111 223 3367899999 555 4444332  11122222221110                   


Q ss_pred             ---------eeeeccCCCccceeEEEEcC-------CCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEE
Q psy8448         271 ---------STFKSLGASDIAVNSIHLLP-------KNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTT  333 (482)
Q Consensus       271 ---------~~~~~~~~~~~~v~~i~~~~-------~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~  333 (482)
                               ...... .+......++|..       ++ .++++....+.|...+++ ++..............+..+++
T Consensus       253 ~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~  330 (353)
T 2g8s_A          253 KGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT  330 (353)
T ss_dssp             CBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred             cCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence                     000000 1123456677753       23 566666677888888874 3332221111111357899999


Q ss_pred             cCCCCEEEEEe-CCcEEE
Q psy8448         334 SPRGEWIYCVG-EDMVLV  350 (482)
Q Consensus       334 ~~~g~~l~~~~-~dg~i~  350 (482)
                      .|||.+.++.. .+|.|+
T Consensus       331 ~pdG~lyv~td~~~g~I~  348 (353)
T 2g8s_A          331 GPDGYLYVLTDESSGELL  348 (353)
T ss_dssp             CTTSCEEEEECSTTEEEE
T ss_pred             CCCCcEEEEEeCCCCEEE
Confidence            99998666433 455544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.76  E-value=0.022  Score=51.56  Aligned_cols=145  Identities=12%  Similarity=0.135  Sum_probs=82.3

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EeEEee--cccCCCeEEEEEccC---CCEEEEEEC----C----Ce
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ-CLRKLE--KAHSLGVTCIQFSRD---NSQILTASF----D----TY  216 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--~~~~~~v~~i~~~~~---~~~l~~~~~----d----g~  216 (482)
                      .....|+|.|+|+ |+++..+|.|++++ .+++ .+..+.  .........|+++|+   +..|.++..    +    +.
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            3578999999997 55556679999997 4554 222110  112356889999997   556655543    2    57


Q ss_pred             EEEEeCCCC--c-----eE-EEeec-cccceeEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCc------
Q psy8448         217 VRIHGLKSG--K-----ML-KEFRG-HSSFVNDITFTADGHSVLSASS-------------DGTVKMWNLKTTE------  268 (482)
Q Consensus       217 i~i~d~~~~--~-----~~-~~~~~-~~~~i~~l~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~------  268 (482)
                      |..++....  .     .+ ..+.. .......|+|.|||.++++.+.             .|.|..++....-      
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            888887654  1     11 11221 1123467999999986666432             2456656554210      


Q ss_pred             -eeeeeeccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448         269 -CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       269 -~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                       ....+..  ++. ....++|+|+...++++-.
T Consensus       187 ~~~~i~a~--G~r-np~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          187 PNSPIWSY--GHR-NPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             TTCCEEEE--CCS-CCCEEEECTTTCCEEEEEC
T ss_pred             CCCcEEEE--ccC-CcceEEEeCCCCCEEEEec
Confidence             0011110  222 3467999994436665543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.75  E-value=0.032  Score=54.79  Aligned_cols=184  Identities=8%  Similarity=0.019  Sum_probs=118.3

Q ss_pred             EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEE
Q psy8448         164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDIT  242 (482)
Q Consensus       164 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~  242 (482)
                      +|+.+ ....|+..++.+......+....-..+..++|++.+..|+.+ ..++.|..+++........+......+..++
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA   86 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA   86 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence            44444 456899999986654333322233468899999976666655 4568899999876544333333334578899


Q ss_pred             EcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcEEEEecC
Q psy8448         243 FTADGHSVLSA-SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNMQGQIVRSLSS  320 (482)
Q Consensus       243 ~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~  320 (482)
                      +++.+..|+.+ ...+.|.+.++........+.   ..-.....+++.|..+.++++-. ..+.|...+++|.....+..
T Consensus        87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~  163 (628)
T 4a0p_A           87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP  163 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSTTCEEEEC---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC
Confidence            98766656554 456789999987543222221   22234589999997645555542 35788888887765555443


Q ss_pred             CcccCcCEEEEEEcCCCCEEEEEe-CCcEEEEEee
Q psy8448         321 GKREGGDFLCCTTSPRGEWIYCVG-EDMVLVVRLI  354 (482)
Q Consensus       321 ~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~~  354 (482)
                      .   ......++++++++.|+.+. ..+.|...++
T Consensus       164 ~---~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          164 N---VGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             S---CSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             C---CCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            2   45678999999877777665 4567774443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.73  E-value=0.013  Score=57.63  Aligned_cols=202  Identities=11%  Similarity=0.047  Sum_probs=120.1

Q ss_pred             CCcEEEEEEcCCCCEEEEE-eCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCcEEEE
Q psy8448         100 KSHVECARFSPDGQYLITG-SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGKVKIW  177 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~i~iw  177 (482)
                      -..+..++|++.+..|..+ ...+.|..++++.......+....       -.....+++.+.+..|+.+ ...+.|.+.
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~-------~~~P~GlAvD~~~~~ly~~d~~~~~I~v~  111 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-------LLSPDGLACDWLGEKLYWTDSETNRIEVS  111 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS-------CSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC-------CCCcCeEEEEecCCEEEEEeCCCCEEEEE
Confidence            4457899999966666544 456789889887543211111110       1468899999865555554 467899999


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-  254 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-  254 (482)
                      ++.... ...+....-.....|++.|.+..|+.+..  .+.|...++............-.....|++++++..|+.+. 
T Consensus       112 ~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~  190 (619)
T 3s94_A          112 NLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA  190 (619)
T ss_dssp             ETTSCS-CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET
T ss_pred             ECCCCC-EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC
Confidence            986543 33332334455778999997666666653  36787778754333322323345678999999777666664 


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcE
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQI  314 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~  314 (482)
                      ..+.|..+|+..... ..+..  ........+++..+  .++++-...+.|...|. +++.
T Consensus       191 ~~~~I~~~~~dG~~~-~~~~~--~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          191 KLNFIHKSNLDGTNR-QAVVK--GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             TTCCEEEESSSCCEE-C-----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred             CCCeEEEecCCCCcc-EEEEe--CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence            467799999875432 22211  11122246666554  45556556778888887 4543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.70  E-value=0.0049  Score=54.58  Aligned_cols=218  Identities=14%  Similarity=0.144  Sum_probs=109.4

Q ss_pred             CCEEEEEeCC----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCC
Q psy8448         112 GQYLITGSVD----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIWKIATG  182 (482)
Q Consensus       112 ~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~  182 (482)
                      +.+++.|+.+    ..+.+||+.+.+-...-..+.  .    ...-..+.+  ++..++.|+.+     ..+.+||..+.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~--~----r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~   87 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPS--R----RCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKD   87 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSS--C----CBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTT
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCc--c----cccceEEEE--CCEEEEEeCcCCCccccceEEECCCCC
Confidence            3455556533    458889988776433211111  1    111112222  56677777754     35889998877


Q ss_pred             eEeEEeecccC-CCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCCceEEE--eeccccceeEEEEcCCCCEEEEEe
Q psy8448         183 QCLRKLEKAHS-LGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       183 ~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      +....-..... .....+.+  ++..++.|+.++     .+.+||+.+.+-...  +....... +++. -+++.++.|+
T Consensus        88 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG  163 (302)
T 2xn4_A           88 QWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAVGG  163 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECC
T ss_pred             ceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEEeC
Confidence            64332211111 11222222  567777777553     588899877653322  11111111 2222 2566666665


Q ss_pred             C-------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEecCCc
Q psy8448         255 S-------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLSSGK  322 (482)
Q Consensus       255 ~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~  322 (482)
                      .       ...+.+||+.+.+-... .......... ++... ++ .+++.|+.+     ..+.+||........+....
T Consensus       164 ~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~  239 (302)
T 2xn4_A          164 YDVASRQCLSTVECYNATTNEWTYI-AEMSTRRSGA-GVGVL-NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN  239 (302)
T ss_dssp             EETTTTEECCCEEEEETTTTEEEEE-CCCSSCCBSC-EEEEE-TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             CCCCCCccccEEEEEeCCCCcEEEC-CCCccccccc-cEEEE-CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC
Confidence            3       24588999987654332 1111111111 22222 33 677777654     46889999655555554332


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         323 REGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      ........+.+  +++.++.|+.++
T Consensus       240 ~~r~~~~~~~~--~~~i~v~GG~~~  262 (302)
T 2xn4_A          240 MCRRNAGVCAV--NGLLYVVGGDDG  262 (302)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             CccccCeEEEE--CCEEEEECCcCC
Confidence            11222222333  566777777654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.69  E-value=0.03  Score=51.00  Aligned_cols=232  Identities=10%  Similarity=0.137  Sum_probs=147.4

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-e
Q psy8448         105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG-Q  183 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~  183 (482)
                      +.-.+|..+.+|.=. ..++.|+|+++...+......         +.|.--.|-.+. .|+..+ +..|+-|++... .
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---------e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~  137 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ  137 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---------SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---------CCceEEEecCCC-eEEEEc-CCeeEEecccCCCC
Confidence            344788888887765 678999999998877766654         457677776544 465555 448999999754 3


Q ss_pred             EeEEeecc---cCCCeEEEEEccCCCEEEEEE-------CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCC---CEE
Q psy8448         184 CLRKLEKA---HSLGVTCIQFSRDNSQILTAS-------FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG---HSV  250 (482)
Q Consensus       184 ~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~---~~l  250 (482)
                      +...+...   ....|..-..+++.++++..+       -.|.+.+|..+.+ .-+.+.+|-..-..+....+.   ..+
T Consensus       138 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf  216 (494)
T 1bpo_A          138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLF  216 (494)
T ss_dssp             CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEE
T ss_pred             chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEE
Confidence            44444321   134466667788888877543       2468899998654 345667776554444432211   233


Q ss_pred             EEEeC---CCcEEEEECCCC---c------eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448         251 LSASS---DGTVKMWNLKTT---E------CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS  317 (482)
Q Consensus       251 ~~~~~---dg~i~i~d~~~~---~------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  317 (482)
                      +.+..   .+.++|.++...   .      .+..+........-..++..++.. .+++.-+.-|.+++||+ ++..+..
T Consensus       217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeee
Confidence            33333   378999998543   1      111111111223334577888877 78999999999999999 6777766


Q ss_pred             ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         318 LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      -.-.   ...|...+.+....-++.....|.+.--.
T Consensus       296 nrIs---~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~  328 (494)
T 1bpo_A          296 NRIS---GETIFVTAPHEATAGIIGVNRKGQVLSVC  328 (494)
T ss_dssp             EECC---SSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred             eccc---CCceEEecccCCCCcEEEEccCceEEEEE
Confidence            5543   55666666666666677777888877433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.59  E-value=0.041  Score=50.10  Aligned_cols=210  Identities=9%  Similarity=0.108  Sum_probs=134.5

Q ss_pred             CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEE
Q psy8448         121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ  200 (482)
Q Consensus       121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~  200 (482)
                      +..|.|-|+.++....+.+..           .-+.-.+|..+.+|.-. ..++.|+|+++...+....  ....|.-=.
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~-----------AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWk  112 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWK  112 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECC-----------CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEE
T ss_pred             CCeEEEEECCCCCcceecccc-----------cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEE
Confidence            347889999886654322222           22445788888777765 6799999999999888874  345677777


Q ss_pred             EccCCCEEEEEECCCeEEEEeCCC-CceEEEeecc----ccceeEEEEcCCCCEEEEEeC-------CCcEEEEECCCCc
Q psy8448         201 FSRDNSQILTASFDTYVRIHGLKS-GKMLKEFRGH----SSFVNDITFTADGHSVLSASS-------DGTVKMWNLKTTE  268 (482)
Q Consensus       201 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~~-------dg~i~i~d~~~~~  268 (482)
                      |-.+ +.|+..+ +..|+-|++.. ..+.+.+..|    ...|.....+++.++++..+-       .|.+.+|..+.+.
T Consensus       113 Wis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~  190 (494)
T 1bpo_A          113 WISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV  190 (494)
T ss_dssp             EEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC
T ss_pred             ecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc
Confidence            7644 4566655 67899999974 3456666544    346778888999999875442       4778999988654


Q ss_pred             eeeeeeccCCCccceeEEEEcCCC--CCEEEEEeC---CCeEEEEEcCC---------cEEEE-ecCCcccCcCEEEEEE
Q psy8448         269 CTSTFKSLGASDIAVNSIHLLPKN--TEHFVVCNK---TNTVVIMNMQG---------QIVRS-LSSGKREGGDFLCCTT  333 (482)
Q Consensus       269 ~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~---d~~i~i~d~~~---------~~~~~-~~~~~~~~~~v~~~~~  333 (482)
                       .+.+.   +|......+....+.  ..+++.+..   .+.+++.++..         +.... +........-..++..
T Consensus       191 -sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv  266 (494)
T 1bpo_A          191 -SQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  266 (494)
T ss_dssp             -EEEEC---CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred             -cchhe---eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence             23333   555444433332211  123444433   37888888821         11111 1111122344567889


Q ss_pred             cCCCCEEEEEeCCcEEE
Q psy8448         334 SPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       334 ~~~g~~l~~~~~dg~i~  350 (482)
                      ++.-..++..+.-|.++
T Consensus       267 s~kygviyviTK~G~i~  283 (494)
T 1bpo_A          267 SEKHDVVFLITKYGYIH  283 (494)
T ss_dssp             ETTTTEEEEEETTSEEE
T ss_pred             cccCCEEEEEecCceEE
Confidence            99999999999999999

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.54  E-value=0.005  Score=54.75  Aligned_cols=219  Identities=10%  Similarity=0.023  Sum_probs=111.2

Q ss_pred             CCCEEEEEeCC----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----C-----CcEEEE
Q psy8448         111 DGQYLITGSVD----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----S-----GKVKIW  177 (482)
Q Consensus       111 ~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----d-----g~i~iw  177 (482)
                      ++.+++.|+.+    ..+.+||..+++-...-....  ..    .....+.+  ++..++.|+.    +     ..+.+|
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~   95 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQV--PR----SGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCY   95 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSS--CC----BSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCc--cc----ccceEEEE--CCEEEEECCCcCCCCCCeecceEEEE
Confidence            45667777632    368999988776543322111  11    11122222  5666777665    2     468899


Q ss_pred             EcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCE
Q psy8448         178 KIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       178 d~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~  249 (482)
                      |+.+.+....-... .......+.+  +++.++.|+.+     ..+.+||+.+.+-...  +......-.++.+  ++..
T Consensus        96 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  171 (308)
T 1zgk_A           96 NPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL  171 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred             CCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence            98877543221111 1112222233  56666666543     3688899877653221  1111111122222  5666


Q ss_pred             EEEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEec
Q psy8448         250 VLSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLS  319 (482)
Q Consensus       250 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~  319 (482)
                      ++.|+.+     ..+.+||+.+.+-... ............+.+  ++ .+++.|+.+     ..+.+||+.......+.
T Consensus       172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          172 YAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             EEEeCCCCCCcCceEEEEeCCCCeEeeC-CCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence            6666653     4589999987654322 111111111222222  33 677777654     56899999666555554


Q ss_pred             CCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         320 SGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       320 ~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      ...........+.+  +++.++.|+.++
T Consensus       248 ~~p~~r~~~~~~~~--~~~i~v~GG~~~  273 (308)
T 1zgk_A          248 PMKHRRSALGITVH--QGRIYVLGGYDG  273 (308)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             CCCCCccceEEEEE--CCEEEEEcCcCC
Confidence            33221222222333  566777777543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.48  E-value=0.071  Score=50.04  Aligned_cols=113  Identities=13%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---CCEEEEEeC------
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASGSQ------  170 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~~~------  170 (482)
                      -.....|+|.|+|+++++-...+.|++++..+++......................|+|+|+   +..|..+..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34567999999999777765445788888665553321111110000012467889999995   555555442      


Q ss_pred             -------CCcEEEEEcCCC-------eEeE-EeecccCCCeEEEEEccCCCEEEEEE
Q psy8448         171 -------SGKVKIWKIATG-------QCLR-KLEKAHSLGVTCIQFSRDNSQILTAS  212 (482)
Q Consensus       171 -------dg~i~iwd~~~~-------~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~  212 (482)
                             ...|.-+++..+       +.+. .+..........|+|.|+|.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   134555655322       1111 12111122478999999998776654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.43  E-value=0.058  Score=47.94  Aligned_cols=214  Identities=7%  Similarity=-0.044  Sum_probs=106.7

Q ss_pred             EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----C-------CcEEEEEcCCC
Q psy8448         114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----S-------GKVKIWKIATG  182 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----d-------g~i~iwd~~~~  182 (482)
                      +++.|+  ..+.+||..+++-.. ......      .......+...++..++.|+.    +       ..+.+||..++
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   77 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQ------VPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS   77 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCC------SCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCC------CCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence            345555  569999998887542 111110      011222223346777788873    1       12778898877


Q ss_pred             eEeEEeecccC-CCeEEEEEccCCCEEEEEECC--------CeEEEEeCCCCceEE--EeeccccceeEEEEcCCCCEEE
Q psy8448         183 QCLRKLEKAHS-LGVTCIQFSRDNSQILTASFD--------TYVRIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVL  251 (482)
Q Consensus       183 ~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~  251 (482)
                      +....-..... .....+.+  ++..++.|+.+        ..+.+||+.+.+-..  .+...... .+++. .+++.++
T Consensus        78 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv  153 (315)
T 4asc_A           78 EWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYV  153 (315)
T ss_dssp             EEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEE
T ss_pred             eEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEE
Confidence            54321111111 11122222  56666666632        368999998765322  11111111 12222 3566667


Q ss_pred             EEeC-C-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcEEEEecC
Q psy8448         252 SASS-D-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN-----TVVIMNMQGQIVRSLSS  320 (482)
Q Consensus       252 ~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~  320 (482)
                      .|+. +     ..+.+||..+.+-... ......... .+++.. ++ .+++.|+.++     .+.+||........+..
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  229 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKFEWKEL-APMQTARSL-FGATVH-DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA  229 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTTEEEEC-CCCSSCCBS-CEEEEE-TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred             EeCCCCCCcccceEEEEeCCCCeEEEC-CCCCCchhc-eEEEEE-CC-EEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence            7765 2     4689999987653322 111111111 122222 33 6777777543     57889986555555543


Q ss_pred             CcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         321 GKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       321 ~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      ..........+.+  +++.++.|+.+
T Consensus       230 ~p~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          230 FPQERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             CCCcccceeEEEE--CCEEEEECCcc
Confidence            2221222233333  56777777764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.43  E-value=0.051  Score=48.88  Aligned_cols=184  Identities=16%  Similarity=0.163  Sum_probs=105.0

Q ss_pred             EEEEEEcCCCCEEEEE------------eCCCcEEEEEcCCCe-EeEEee-cc-----cCCCeEEEEEcc--CCC-EEEE
Q psy8448         153 VMSLAYSRDSEMLASG------------SQSGKVKIWKIATGQ-CLRKLE-KA-----HSLGVTCIQFSR--DNS-QILT  210 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~------------~~dg~i~iwd~~~~~-~~~~~~-~~-----~~~~v~~i~~~~--~~~-~l~~  210 (482)
                      ...+...|+|..++++            ..+|.|.++|+.+.. ....+. .+     .......+.+.+  ++. +|++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3444556666444443            268999999987421 112221 11     123566777766  343 4555


Q ss_pred             EEC---CCeEEEEeCCCCc-e---EEEeecc-ccceeEEEEcCCCCEEEEEeC-----------------CCcEEEEECC
Q psy8448         211 ASF---DTYVRIHGLKSGK-M---LKEFRGH-SSFVNDITFTADGHSVLSASS-----------------DGTVKMWNLK  265 (482)
Q Consensus       211 ~~~---dg~i~i~d~~~~~-~---~~~~~~~-~~~i~~l~~~~~~~~l~~~~~-----------------dg~i~i~d~~  265 (482)
                      +..   +..|.+|+++... .   +..+.+. -...+.+.+.++|++.++...                 .|.|..+|. 
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            432   4567777765432 2   2233321 235789999999987776541                 244555554 


Q ss_pred             CCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEE--EEecCCcccCcCEEEEEEcC-CCCEE
Q psy8448         266 TTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIV--RSLSSGKREGGDFLCCTTSP-RGEWI  340 (482)
Q Consensus       266 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~--~~~~~~~~~~~~v~~~~~~~-~g~~l  340 (482)
                       ++.....    ..-..-+.++|+|++..++++-+..+.|..|++.  +...  +.+. .   .+..-.+++++ +|++.
T Consensus       211 -~~~~~~~----~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          211 -NDVRVVA----EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             -TCCEEEE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTTCCEE
T ss_pred             -CeEEEee----cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCCCcEE
Confidence             3322222    2223568999999996666666778999999984  3321  2221 1   34567789998 58877


Q ss_pred             EEEeCC
Q psy8448         341 YCVGED  346 (482)
Q Consensus       341 ~~~~~d  346 (482)
                      +++..+
T Consensus       282 va~~~~  287 (355)
T 3sre_A          282 VGCHPN  287 (355)
T ss_dssp             EEEESC
T ss_pred             EEecCC
Confidence            766544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.42  E-value=0.087  Score=49.59  Aligned_cols=238  Identities=10%  Similarity=0.082  Sum_probs=140.8

Q ss_pred             EEEEeCCCeEEEEecCCCceeecccccccccccc-----------------cccc--EEEEEEcC---CCCEEEEEe-CC
Q psy8448         115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML-----------------MEEA--VMSLAYSR---DSEMLASGS-QS  171 (482)
Q Consensus       115 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----------------h~~~--i~~l~~~~---~~~~l~~~~-~d  171 (482)
                      +.+|+..|.|+|+-+.+++.+..+..-......+                 ..+.  =..+++..   ||++|+.-. .+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            5678889999999999988877654322111100                 0011  11233332   678888877 56


Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEc--cCCCEEEEEECC-------CeE------------EEEeCCCCceEEE
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFS--RDNSQILTASFD-------TYV------------RIHGLKSGKMLKE  230 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~d-------g~i------------~i~d~~~~~~~~~  230 (482)
                      ..|...++..-++-..+..+....+..+.|-  |+..+++.++..       |..            ...|..+.+....
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q  232 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ  232 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence            7888999999888877777788889999986  678888887642       221            1123333333222


Q ss_pred             eeccccceeEEEEcCCCCEEEEEeCCC---------------cEEEEECCC-------Cc--e-----eeeeeccC----
Q psy8448         231 FRGHSSFVNDITFTADGHSVLSASSDG---------------TVKMWNLKT-------TE--C-----TSTFKSLG----  277 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~~l~~~~~dg---------------~i~i~d~~~-------~~--~-----~~~~~~~~----  277 (482)
                      +.- .+....+...+++.+.++.+.+.               .+.++++..       |+  .     +..+....    
T Consensus       233 v~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~  311 (638)
T 3sbq_A          233 VIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK  311 (638)
T ss_dssp             EEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred             EEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence            211 22333455567777777665431               255555321       10  0     11111000    


Q ss_pred             --------CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-------CcE-------EEEecCCcccCcCEEEEEEcC
Q psy8448         278 --------ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-------GQI-------VRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       278 --------~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~-------~~~~~~~~~~~~~v~~~~~~~  335 (482)
                              ........+..+|+|..+++.+-.+.++.++|.+       ++.       ......    .......+|++
T Consensus       312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~----GlGPlHt~Fd~  387 (638)
T 3sbq_A          312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL----GLGPLHTTFDG  387 (638)
T ss_dssp             CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC----CSCEEEEEECS
T ss_pred             CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC----CCcccEEEECC
Confidence                    1122345688999996556666678999999985       121       222222    34567899999


Q ss_pred             CCCEEEEEeCCcEEEEEeehhh
Q psy8448         336 RGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       336 ~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                      +|.-..+---|..|.-|++...
T Consensus       388 ~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          388 RGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             SSEEEEEETTTTEEEEEEHHHH
T ss_pred             CCceEeeeeecceEEEEeccHH
Confidence            9954455668999998887754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.40  E-value=0.013  Score=53.18  Aligned_cols=146  Identities=10%  Similarity=0.141  Sum_probs=96.4

Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCeEeEEeeccc---CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc---------
Q psy8448         159 SRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAH---SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK---------  226 (482)
Q Consensus       159 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---------  226 (482)
                      +.+|..++.+- ++.||.-++..+...+.+...+   -..+..+..+|+|.+||..+ +..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            34566666653 4688888887554455553332   23688899999999999887 6688888886321         


Q ss_pred             ---eEEEeec------cccceeEEEEcC---CCCEEEEEeCCCcEEEEECCCCc--eeeeee------ccCCCccceeEE
Q psy8448         227 ---MLKEFRG------HSSFVNDITFTA---DGHSVLSASSDGTVKMWNLKTTE--CTSTFK------SLGASDIAVNSI  286 (482)
Q Consensus       227 ---~~~~~~~------~~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~------~~~~~~~~v~~i  286 (482)
                         ..+.+.-      ...+|..+.|+|   .+..|++-..|+.|++||+....  +. .+.      ........|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence               1122221      246799999999   45789999999999999998632  11 221      111233678899


Q ss_pred             EEcCCCCCEEEEEe--CCCeEEEE
Q psy8448         287 HLLPKNTEHFVVCN--KTNTVVIM  308 (482)
Q Consensus       287 ~~~~~~~~~l~~~~--~d~~i~i~  308 (482)
                      +|.+++ --|.+.+  .+|.|+-.
T Consensus       186 ~Fg~~~-lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSKDG-LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTS-SCEEEEECTTSCEEEEE
T ss_pred             EEcCCC-cEEEEEecCCCCCEEEE
Confidence            999976 4455533  67777644

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.39  E-value=0.026  Score=51.27  Aligned_cols=147  Identities=12%  Similarity=0.168  Sum_probs=99.5

Q ss_pred             ccCCCEEEEEECCCeEEEEeCCCCceEEEeecc----ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------
Q psy8448         202 SRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH----SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC--------  269 (482)
Q Consensus       202 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------  269 (482)
                      ..+|..++++- ++.||.-++......+.+...    -..|..+..+|+|++|+..+. ..|.|..+..+..        
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            34666676665 578888887755445555432    235888999999998888764 5788988873221        


Q ss_pred             ----eeeeecc--C-CCccceeEEEEcCCCC--CEEEEEeCCCeEEEEEcCC---cEEEEecCCc------ccCcCEEEE
Q psy8448         270 ----TSTFKSL--G-ASDIAVNSIHLLPKNT--EHFVVCNKTNTVVIMNMQG---QIVRSLSSGK------REGGDFLCC  331 (482)
Q Consensus       270 ----~~~~~~~--~-~~~~~v~~i~~~~~~~--~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~------~~~~~v~~~  331 (482)
                          .+.+..-  . ....+|..+.|+|-+.  ..+++-..|+.|++||+..   .+. .+....      .....+.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence                1122210  0 1256799999999764  4899999999999999942   222 332211      112678899


Q ss_pred             EEcCCCCEEEEEe--CCcEEEE
Q psy8448         332 TTSPRGEWIYCVG--EDMVLVV  351 (482)
Q Consensus       332 ~~~~~g~~l~~~~--~dg~i~i  351 (482)
                      +|.+++-.|+..+  .+|.|+-
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCEEE
Confidence            9999988888766  8899883

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.0028  Score=56.54  Aligned_cols=193  Identities=9%  Similarity=0.094  Sum_probs=104.5

Q ss_pred             CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEE--cCCCCEEEEE--eCCCcEEEEEcCCCeEeEEe
Q psy8448         113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY--SRDSEMLASG--SQSGKVKIWKIATGQCLRKL  188 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~--~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~  188 (482)
                      ..++.++.||.|+-.|..+|+..-.+.....       .++....-  .+.+..++.+  +.||.+..++..+|.....+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~   83 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF-------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL   83 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGS-------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCcc-------CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence            4678889999999999999998877655410       11111110  0122234443  58999999999888655544


Q ss_pred             eccc---CCCeEE---EEE-c----cCCCEEEEEECCCeEEEEeCCCCceEEEeeccc--cc-----eeEEEEc-----C
Q psy8448         189 EKAH---SLGVTC---IQF-S----RDNSQILTASFDTYVRIHGLKSGKMLKEFRGHS--SF-----VNDITFT-----A  245 (482)
Q Consensus       189 ~~~~---~~~v~~---i~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~-----i~~l~~~-----~  245 (482)
                      ....   ..++..   ... .    ..+..+++|+.+|.+...|+++|+.+.++....  +.     ..|....     .
T Consensus        84 ~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           84 SIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             EHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             ccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence            3221   122221   000 0    145678899999999999999999998886321  10     1111111     1


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeec--cCCC--cccee-EEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEE
Q psy8448         246 DGHSVLSASSDGTVKMWNLKTTECTSTFKS--LGAS--DIAVN-SIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVR  316 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~--~~~v~-~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~  316 (482)
                      .+..++.+..+..+.+.+ ++++ ...+..  ....  ..++. +-....++ .+ ++++.||.|..+|. .|..+-
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg-~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDG-MC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSS-CC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCC-cE-EEECCCCEEEEEECCCCcEEE
Confidence            235677777777777766 4453 222110  0000  00000 00001223 33 55788888888887 465543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.32  E-value=0.023  Score=50.25  Aligned_cols=175  Identities=7%  Similarity=0.010  Sum_probs=88.6

Q ss_pred             CCEEEEEeC--CCcEEEEEcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEEEECC----CeEEEEeCCCCceEEE--ee
Q psy8448         162 SEMLASGSQ--SGKVKIWKIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILTASFD----TYVRIHGLKSGKMLKE--FR  232 (482)
Q Consensus       162 ~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~--~~  232 (482)
                      +..++.|+.  ...+.+||..+++....-... .......+.  -++..++.|+.+    ..+.+||+.+.+-...  +.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            335556654  357899998887643221111 111222222  256677777654    5789999987753222  22


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-----
Q psy8448         233 GHSSFVNDITFTADGHSVLSASSD------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-----  301 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-----  301 (482)
                      ........+.+  ++..++.|+.+      ..+.+||..+.+-... ......... .+++.. ++ .+++.|+.     
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~  163 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCS-HGMVEA-NG-LIYVCGGSLGNNV  163 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE-TT-EEEEECCEESCTT
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcce-eEEEEE-CC-EEEEECCCCCCCC
Confidence            11111222222  56677777654      4589999988754332 111111111 122222 33 66666653     


Q ss_pred             ----CCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         302 ----TNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       302 ----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                          -..+.+||........+.........-..+.+  +++.++.|+.+
T Consensus       164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  210 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQN  210 (306)
T ss_dssp             TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred             cccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCC
Confidence                34588999965555555432211222222333  56666666654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.31  E-value=0.018  Score=50.85  Aligned_cols=191  Identities=11%  Similarity=0.114  Sum_probs=99.3

Q ss_pred             CCCEEEEEeCC-----CeEEEEecCCCc---eeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEEE
Q psy8448         111 DGQYLITGSVD-----GFIEVWNFTTGK---IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKIW  177 (482)
Q Consensus       111 ~~~~l~s~~~d-----g~v~iwd~~~~~---~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~iw  177 (482)
                      ++++++.|+.+     ..+.+||+.+++   -........  .    .....++.+  +++.++.|+.+     ..+.+|
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~--~----r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~  133 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV--R----RGLAGATTL--GDMIYVSGGFDGSRRHTSMERY  133 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS--C----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC--C----ccceeEEEE--CCEEEEEcccCCCcccceEEEE
Confidence            56777777754     469999998876   332211111  0    111222222  56677777644     368899


Q ss_pred             EcCCCeEeEEeecccC-CCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCE
Q psy8448         178 KIATGQCLRKLEKAHS-LGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~  249 (482)
                      |+.+.+....-..... ....++.+  ++..++.|+.+     ..+.+||+.+.+-...  +........++.+  +++.
T Consensus       134 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  209 (301)
T 2vpj_A          134 DPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHI  209 (301)
T ss_dssp             ETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred             cCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEE
Confidence            9887754332211111 11222222  66677777654     4688999887653322  1111111122222  5666


Q ss_pred             EEEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEE
Q psy8448         250 VLSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRS  317 (482)
Q Consensus       250 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~  317 (482)
                      ++.|+.+     ..+.+||+.+.+-... ............+.+  ++ .+++.|+.+     ..+.+||........
T Consensus       210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  283 (301)
T 2vpj_A          210 YVVGGFDGTAHLSSVEAYNIRTDSWTTV-TSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPIIDSWEV  283 (301)
T ss_dssp             EEECCBCSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred             EEEeCCCCCcccceEEEEeCCCCcEEEC-CCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence            7777653     4689999988754332 211111111222222  33 677777654     357788885444333

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.31  E-value=0.086  Score=47.19  Aligned_cols=238  Identities=11%  Similarity=0.064  Sum_probs=124.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC---CCEEEEE---eCCCc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD---SEMLASG---SQSGK  173 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~~~---~~dg~  173 (482)
                      -.....|+|.|+|.++++--..|.|++++..+++........  ............|+++|+   +..|...   ..++.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~--~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP--GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--ceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            456789999999998777655899999987655532111110  011122467899999995   3445443   23455


Q ss_pred             EEEEEcCCC----------eEeE-EeecccCCCeEEEEEccCCCEEEEEEC-------------CCeEEEEeCCCCc---
Q psy8448         174 VKIWKIATG----------QCLR-KLEKAHSLGVTCIQFSRDNSQILTASF-------------DTYVRIHGLKSGK---  226 (482)
Q Consensus       174 i~iwd~~~~----------~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~---  226 (482)
                      |.-|.+..+          +.+. .+.....-....|+|.|+|.+.++.+.             .|.|.-.+....-   
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            666665441          1111 121111113457999999987666542             3556555654220   


Q ss_pred             ----eEEEe-eccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcee---------------eeeeccCCCccceeE
Q psy8448         227 ----MLKEF-RGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTECT---------------STFKSLGASDIAVNS  285 (482)
Q Consensus       227 ----~~~~~-~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~---------------~~~~~~~~~~~~v~~  285 (482)
                          ....+ .+|. ....++|+|++.+.++=. .++.=.|--+..+...               ..+.....+......
T Consensus       189 nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G  267 (347)
T 3das_A          189 NPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG  267 (347)
T ss_dssp             CSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred             CCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence                00111 2343 356899999877554422 2222222222222210               000000011124456


Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEEcCCcEE----EEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448         286 IHLLPKNTEHFVVCNKTNTVVIMNMQGQIV----RSLSSGKREGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       286 i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      ++|.. + .+++..-..+.|....+++...    ..+...  ....+..++..|||.++++-+
T Consensus       268 ~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~--~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          268 IAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQAFLEG--EYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEEESTT--TSSCEEEEEEEETTEEEEEEC
T ss_pred             eEEEc-C-ceeeccccCCEEEEEEecCCceecceEEeecC--CCCCccEEEECCCCcEEEEEc
Confidence            66653 3 5666666666776666633211    222221  146788999999987666543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.29  E-value=0.19  Score=50.85  Aligned_cols=231  Identities=11%  Similarity=0.099  Sum_probs=135.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI  179 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~  179 (482)
                      .+.|+++.-..+|. |-.|+.+| +..||-..-+.   +....  .  .....|.++....++ .|..++.+| +..||.
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~---~~~~~--~--~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~   89 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQ---HFTYG--E--NNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNY   89 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEE---CSCTT--S--TTSSCEEEEEEETTT-EEEEEETTE-EEEEET
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEE---EEccC--C--CCCceEEEEEEcCCC-cEEEEeCCC-eEEEeC
Confidence            46799999988885 45566777 66777432211   11110  0  013568888877766 466666665 789998


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee-----ccccceeEEEEcCCCCEEEEEe
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-----GHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      .+.+..... ......|.++.. .++ .|..++.+ .|..+|..+++.. .+.     .....|.++....++.+.+ ++
T Consensus        90 ~~~~f~~~~-~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt  163 (758)
T 3ott_A           90 RADRYEQPE-TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GT  163 (758)
T ss_dssp             TTTEECCCS-CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EE
T ss_pred             CCCEEECcc-cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-Ee
Confidence            776533211 112335777654 344 67777766 6888998766543 231     1234588888888877554 55


Q ss_pred             CCCcEEEEECCCCceeeeeeccC---CCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEE
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCC  331 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~  331 (482)
                      .+| |..||..+++.. .+....   .....|.++...+++ ..+.+++. +-+..++.....+..+...  ....|.++
T Consensus       164 ~~G-l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~~~~i~~i  237 (758)
T 3ott_A          164 YNG-LCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAF--HNNSIKSL  237 (758)
T ss_dssp             TTE-EEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEE--EEEEEEEE
T ss_pred             CCC-HhhCccCCCceE-EecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCC--CCCeEEEE
Confidence            554 778887766532 221110   112347788777765 44555553 4688888854444333211  13457888


Q ss_pred             EEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         332 TTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       332 ~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ...++|.+.+ |+.+| +.+++..
T Consensus       238 ~~d~~g~lWi-gT~~G-l~~~~~~  259 (758)
T 3ott_A          238 ALDGNGDLLA-GTDNG-LYVYHND  259 (758)
T ss_dssp             EECTTCCEEE-EETTE-EEEECCT
T ss_pred             EEcCCCCEEE-EeCCc-eeEEecC
Confidence            8888887655 44544 5656543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.27  E-value=0.1  Score=47.19  Aligned_cols=144  Identities=14%  Similarity=0.186  Sum_probs=79.7

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee------cccCCCeEEEEEccC---CCEEEEEEC--------
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE------KAHSLGVTCIQFSRD---NSQILTASF--------  213 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~i~~~~~---~~~l~~~~~--------  213 (482)
                      .....|+|.|+|+.|+++...|.|++++. .+.....+.      .........++++|+   +..|.++..        
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            35789999999984555567899999985 333221110      112345789999996   555554432        


Q ss_pred             CCeEEEEeCCCC--c--eEEE-eec------cccceeEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCc-
Q psy8448         214 DTYVRIHGLKSG--K--MLKE-FRG------HSSFVNDITFTADGHSVLSASS-------------DGTVKMWNLKTTE-  268 (482)
Q Consensus       214 dg~i~i~d~~~~--~--~~~~-~~~------~~~~i~~l~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~-  268 (482)
                      ...|..+++...  +  .... +..      .......|.|.|||.+.++.+.             .|.|.-++....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            235666766533  1  1111 111      1122467999999965555433             2457777765320 


Q ss_pred             -----------eeeeeeccCCCccceeEEEEcCCCCCEEEE
Q psy8448         269 -----------CTSTFKSLGASDIAVNSIHLLPKNTEHFVV  298 (482)
Q Consensus       269 -----------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  298 (482)
                                 ....+..  ++ .....++|.|....++++
T Consensus       177 ~~npf~~~~~~~~~i~a~--G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSY--GI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEE--CC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCcCCCCCCccEEEE--cC-cCccceEEECCCCCEEEE
Confidence                       1111110  22 235789999943255554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.24  E-value=0.089  Score=46.29  Aligned_cols=199  Identities=11%  Similarity=0.095  Sum_probs=114.1

Q ss_pred             cCCCCEEEEEe--CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC--------------C
Q psy8448         109 SPDGQYLITGS--VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS--------------G  172 (482)
Q Consensus       109 s~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d--------------g  172 (482)
                      ++++..+....  .++.|...+..... ...+..          ..  +--+++++.+|+.+...              .
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----------~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~   88 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----------DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRN   88 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----------EE--EEEEEECSSEEEEEEECC------CCSSCCSE
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----------Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCC
Confidence            45666776654  24566666654333 222221          12  33457889988888643              3


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE----CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS----FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      .|+..++..++.. .+.   ...  ...|++++++|+-..    .+..|...++.... ...+..+..    ..++++++
T Consensus        89 ~Iy~i~~dg~~~~-~l~---~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~  157 (302)
T 3s25_A           89 SLCRIKRNGHGST-VLD---PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDR  157 (302)
T ss_dssp             EEEEEETTSCCCE-EEE---CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETT
T ss_pred             eEEEEeCCCCcce-Eee---cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECC
Confidence            5777777665432 231   111  236778888888776    34567777776433 344443332    35677888


Q ss_pred             EEEEEeC-CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-CeEEEEEcCCcEEEEecCCcccCc
Q psy8448         249 SVLSASS-DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-NTVVIMNMQGQIVRSLSSGKREGG  326 (482)
Q Consensus       249 ~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~  326 (482)
                      .|+-.+. ...|...++..+.....+.   +   ... ..+.|++..++.+...+ ..|..-+++|.....+...     
T Consensus       158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~-----  225 (302)
T 3s25_A          158 YFYYNNPKNGQLYRYDTASQSEALFYD---C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA-----  225 (302)
T ss_dssp             EEEEECTTTCCEEEEETTTTEEEEEEC---S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS-----
T ss_pred             EEEEEeCCCceEEEEECCCCCEEEEeC---C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC-----
Confidence            8886665 5778888887665433332   1   112 23568884444443333 4677777777666666532     


Q ss_pred             CEEEEEEcCCCCEEEEEeC
Q psy8448         327 DFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       327 ~v~~~~~~~~g~~l~~~~~  345 (482)
                      .+  ..|+|++.+|+.++.
T Consensus       226 ~~--~~~~~~g~~Iy~~~~  242 (302)
T 3s25_A          226 NI--EHYNVYGSLIFYQRG  242 (302)
T ss_dssp             CE--EEEEEETTEEEEEEC
T ss_pred             Cc--ceEEECCCEEEEEEC
Confidence            23  347888888886643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.24  E-value=0.024  Score=46.42  Aligned_cols=145  Identities=8%  Similarity=-0.008  Sum_probs=84.4

Q ss_pred             CCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE------EEee--ccccceeEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy8448         194 LGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML------KEFR--GHSSFVNDITFTADGHSVLSASSDGTVKMWNLK  265 (482)
Q Consensus       194 ~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~  265 (482)
                      ..+..++|+|+|.+.++  .+|.++-.+..+.+..      ..+-  +-. .-.++.|.|+|.+.++  .||.|.-++-.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            36789999999886666  6888877776553221      1110  111 1478999999997777  55988877753


Q ss_pred             CCceeeeeec---c-CCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-Cc------EEEEecCCcccCcCEEEEEEc
Q psy8448         266 TTECTSTFKS---L-GASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQ------IVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       266 ~~~~~~~~~~---~-~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~------~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      +.....-+..   + ...-..+..|.+.|+| .+.++.  |+.++-.... +.      ....+-...  -...+.+.|+
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g--~~~yr~l~f~  190 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG--WDTFKFLFFS  190 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS--GGGEEEEEEC
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEEecCCCCCCCcccccccceeccCC--cceEEEEEEC
Confidence            3221111100   0 0122567899999998 566555  7775433321 11      011111111  2344567799


Q ss_pred             CCCCEEEEEeCCcEEE
Q psy8448         335 PRGEWIYCVGEDMVLV  350 (482)
Q Consensus       335 ~~g~~l~~~~~dg~i~  350 (482)
                      ++|...++.  +|.++
T Consensus       191 ~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          191 SVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             TTSCEEEEE--TTEEE
T ss_pred             CCCcEEEEe--CCeEE
Confidence            999877766  78666

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.09  E-value=0.13  Score=45.59  Aligned_cols=214  Identities=9%  Similarity=0.004  Sum_probs=103.6

Q ss_pred             EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----CC-------cEEEEEcCCC
Q psy8448         114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----SG-------KVKIWKIATG  182 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----dg-------~i~iwd~~~~  182 (482)
                      +++.|+.  .+.+||..+++-.. .......      ..........++..++.|+.    ++       .+.+||..++
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   88 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYL-TALAEQI------PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS   88 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEE-EEECTTS------CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT
T ss_pred             hhhcccc--ceEEECCCCCceec-ccCCccC------CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC
Confidence            4444543  48899998877543 1111100      11112223346777788873    12       1778888776


Q ss_pred             eEeEEeecccC-CCeEEEEEccCCCEEEEEECC-------CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCEEEE
Q psy8448         183 QCLRKLEKAHS-LGVTCIQFSRDNSQILTASFD-------TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       183 ~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      +....-..... .....+.+  ++..++.|+.+       ..+.+||+.+.+-...  +...... .+++. .++..++.
T Consensus        89 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~  164 (318)
T 2woz_A           89 EWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-HNGMIYCL  164 (318)
T ss_dssp             EEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-ETTEEEEE
T ss_pred             cEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-ECCEEEEE
Confidence            54332111111 11222222  56677777754       3588899887653322  1111111 12222 35666666


Q ss_pred             EeC------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEecCC
Q psy8448         253 ASS------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLSSG  321 (482)
Q Consensus       253 ~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~  321 (482)
                      |+.      -..+.+||+.+.+-... ......... .+++.. ++ .+++.|+.+     ..+.+||........+...
T Consensus       165 GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  240 (318)
T 2woz_A          165 GGKTDDKKCTNRVFIYNPKKGDWKDL-APMKTPRSM-FGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF  240 (318)
T ss_dssp             CCEESSSCBCCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCC
T ss_pred             cCCCCCCCccceEEEEcCCCCEEEEC-CCCCCCccc-ceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCC
Confidence            653      24589999988654332 111111111 122222 33 677777643     3577888865544444432


Q ss_pred             cccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         322 KREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       322 ~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      .........+.+  +++.++.|+.+
T Consensus       241 p~~r~~~~~~~~--~~~i~v~GG~~  263 (318)
T 2woz_A          241 PQERSSISLVSL--AGSLYAIGGFA  263 (318)
T ss_dssp             SSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             CCcccceEEEEE--CCEEEEECCee
Confidence            211222222322  46666777654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.05  E-value=0.051  Score=47.89  Aligned_cols=193  Identities=10%  Similarity=0.100  Sum_probs=100.7

Q ss_pred             CCCEEEEEeCC-----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEEcC
Q psy8448         111 DGQYLITGSVD-----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG-----KVKIWKIA  180 (482)
Q Consensus       111 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg-----~i~iwd~~  180 (482)
                      ++++++.|+.+     ..+.+||..+.+-...-.....      ......+.+  ++..++.|+.++     .+.+||+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~------r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~  132 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR------RSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIK  132 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC------CBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc------ccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCC
Confidence            56777777744     3588999887764432221111      111222222  567777777553     57788988


Q ss_pred             CCeEeEEeecccC-CCeEEEEEccCCCEEEEEECC-------CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCEE
Q psy8448         181 TGQCLRKLEKAHS-LGVTCIQFSRDNSQILTASFD-------TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       181 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l  250 (482)
                      +.+....-..... ....++.+  ++..++.|+.+       ..+.+||+.+.+-...  +.........+.+  +++.+
T Consensus       133 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy  208 (302)
T 2xn4_A          133 SNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLY  208 (302)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred             CCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEE
Confidence            7754332211111 11222222  56666666542       3588999987653322  2111111122222  56777


Q ss_pred             EEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEec
Q psy8448         251 LSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLS  319 (482)
Q Consensus       251 ~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~  319 (482)
                      +.|+.+     ..+.+||+.+.+-... ......... .+++.. ++ .+++.|+.+     ..+.+||........+.
T Consensus       209 v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          209 AVGGHDGPLVRKSVEVYDPTTNAWRQV-ADMNMCRRN-AGVCAV-NG-LLYVVGGDDGSCNLASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             EECCBSSSSBCCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred             EECCCCCCcccceEEEEeCCCCCEeeC-CCCCCcccc-CeEEEE-CC-EEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence            777654     4689999988654332 111111111 122222 33 677777654     35889998666555554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.00  E-value=0.14  Score=45.29  Aligned_cols=174  Identities=9%  Similarity=0.095  Sum_probs=87.8

Q ss_pred             EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-----C------CeEEEEeCCCCceEEE--
Q psy8448         164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-----D------TYVRIHGLKSGKMLKE--  230 (482)
Q Consensus       164 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----d------g~i~i~d~~~~~~~~~--  230 (482)
                      +++.|+  ..+.+||..+++-...-...........+...++..++.|+.     .      ..+..||..+.+-...  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  579999998887543111111122333333457778888873     1      1378899887653221  


Q ss_pred             eeccccceeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-
Q psy8448         231 FRGHSSFVNDITFTADGHSVLSASSD--------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-  301 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-  301 (482)
                      +......- +++.. ++..++.|+.+        ..+.+||..+.+-... ......... .+++. .++ .+++.|+. 
T Consensus        85 ~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~-~~~~~-~~~-~iyv~GG~~  158 (315)
T 4asc_A           85 LPSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLPYVVYG-HTVLS-HMD-LVYVIGGKG  158 (315)
T ss_dssp             BSSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-CCCSSCCBS-CEEEE-ETT-EEEEECCBC
T ss_pred             CCcchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-CCCCCcccc-eeEEE-ECC-EEEEEeCCC
Confidence            11111111 22222 55666666632        4589999987653322 111111111 12222 233 67777765 


Q ss_pred             C-----CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         302 T-----NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       302 d-----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                      +     ..+.+||........+............+.+  +++.++.|+.++
T Consensus       159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~  207 (315)
T 4asc_A          159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTD  207 (315)
T ss_dssp             TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECS
T ss_pred             CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCC
Confidence            2     4688999865555555432221222223333  567777777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.99  E-value=0.044  Score=57.65  Aligned_cols=227  Identities=11%  Similarity=0.156  Sum_probs=129.7

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-E
Q psy8448         106 ARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQ-C  184 (482)
Q Consensus       106 ~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~  184 (482)
                      .-.+|..+.+|.=. ..++.|+|+++...+......         .+|.--.|-... .|+..+ +..|..|++.... +
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~---------e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P  138 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP  138 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC---------CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCcc
Confidence            34688888777654 678999999988777666554         467777787554 455554 3489999996533 3


Q ss_pred             eEEeeccc----CCCeEEEEEccCCCEEEEEE-------CCCeEEEEeCCCCceEEEeeccccceeEEEEc--CCCCEEE
Q psy8448         185 LRKLEKAH----SLGVTCIQFSRDNSQILTAS-------FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFT--ADGHSVL  251 (482)
Q Consensus       185 ~~~~~~~~----~~~v~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~--~~~~~l~  251 (482)
                      ...+ .-|    ...|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.||-+....+...  +....++
T Consensus       139 ~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          139 VKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             HHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEE
Confidence            2222 222    34566667788888877543       34788889876443 34455555444333332  1112222


Q ss_pred             E-EeC---CCcEEEEECCCC---cee------eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448         252 S-ASS---DGTVKMWNLKTT---ECT------STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS  317 (482)
Q Consensus       252 ~-~~~---dg~i~i~d~~~~---~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  317 (482)
                      + +..   .+.++|.++...   ...      ..+.+......-..++..++.. .++..-+.-|.+.+||+ ++..+..
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhhh
Confidence            2 221   368999988543   111      1111111112223467777766 68888999999999999 5655443


Q ss_pred             ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         318 LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      -.-.   ..+|...+-+....-++.....|.|.
T Consensus       296 ~ris---~~~iF~~~~~~~~~g~~~vnr~G~vl  325 (1630)
T 1xi4_A          296 NRIS---GETIFVTAPHEATAGIIGVNRKGQVL  325 (1630)
T ss_pred             cccc---CCceEEeccCCCCCceEEEcCCceEE
Confidence            3322   33343333333333344444555554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.94  E-value=0.087  Score=55.55  Aligned_cols=210  Identities=9%  Similarity=0.108  Sum_probs=125.3

Q ss_pred             CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEE
Q psy8448         121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ  200 (482)
Q Consensus       121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~  200 (482)
                      ..+|.|-|+.++..+.+-+..           .-+.-.+|..+.+|.-. ..++.|+|+++...+....  ...+|.-=.
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~-----------AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWk  112 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWK  112 (1630)
T ss_pred             CceEEEEECCCCCCccccccc-----------chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEE
Confidence            347899998886644322222           22344678777666654 6799999999888777763  345677777


Q ss_pred             EccCCCEEEEEECCCeEEEEeCCCC-ceEEEeecc----ccceeEEEEcCCCCEEEEEe-------CCCcEEEEECCCCc
Q psy8448         201 FSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGH----SSFVNDITFTADGHSVLSAS-------SDGTVKMWNLKTTE  268 (482)
Q Consensus       201 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~-------~dg~i~i~d~~~~~  268 (482)
                      |-.. +.|+..+ +..|+-|++... .+.+.+..|    ...|..-..+++.++++..+       -.|.+.+|..+.+.
T Consensus       113 Wis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~  190 (1630)
T 1xi4_A          113 WISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV  190 (1630)
T ss_pred             ecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence            7644 3455555 668999999642 344444433    45677888899999987544       34789999987643


Q ss_pred             eeeeeeccCCCccceeEEEEc--CCCCCEEEEEeC---CCeEEEEEcCC----cEE------EEecCCcccCcCEEEEEE
Q psy8448         269 CTSTFKSLGASDIAVNSIHLL--PKNTEHFVVCNK---TNTVVIMNMQG----QIV------RSLSSGKREGGDFLCCTT  333 (482)
Q Consensus       269 ~~~~~~~~~~~~~~v~~i~~~--~~~~~~l~~~~~---d~~i~i~d~~~----~~~------~~~~~~~~~~~~v~~~~~  333 (482)
                      . +.+.   +|-.....+...  +....+++.+..   .+.++|.++..    ...      ..+........-..++..
T Consensus       191 s-Q~ie---gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v  266 (1630)
T 1xi4_A          191 S-QPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  266 (1630)
T ss_pred             c-hhhh---HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence            2 2222   443333222221  111123332222   36788888721    111      011111111223346788


Q ss_pred             cCCCCEEEEEeCCcEEE
Q psy8448         334 SPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       334 ~~~g~~l~~~~~dg~i~  350 (482)
                      ++.-..++..+.-|.++
T Consensus       267 s~k~g~iy~itk~G~~~  283 (1630)
T 1xi4_A          267 SEKHDVVFLITKYGYIH  283 (1630)
T ss_pred             ccccCEEEEEecCceEE
Confidence            88888999999999999

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.94  E-value=0.54  Score=49.69  Aligned_cols=226  Identities=15%  Similarity=0.108  Sum_probs=125.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC------CCEEEEEeC-CC
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD------SEMLASGSQ-SG  172 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~------~~~l~~~~~-dg  172 (482)
                      ...|...+.+.  .+++.++ ++.+.++++.+++.......       .....|.|+++.|.      ++++++|.. |+
T Consensus       513 ~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~-------~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~  582 (1158)
T 3ei3_A          513 AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHT-------EMEHEVACLDITPLGDSNGLSPLCAIGLWTDI  582 (1158)
T ss_dssp             CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEE-------ECSSCEEEEECCCCSSSTTCCSEEEEEETTTT
T ss_pred             CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeeccc-------CCCCceEEEEeecCCCCcccccEEEEEECCCC
Confidence            34566666553  3566555 57888888876543322111       12568999999863      468999996 99


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECCCeEEEEeCC--CCceEEE---eeccccceeEEEEcC
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFDTYVRIHGLK--SGKMLKE---FRGHSSFVNDITFTA  245 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~i~d~~--~~~~~~~---~~~~~~~i~~l~~~~  245 (482)
                      +++|+++.+.+.+.....+......++.+..  ...+|.+|-.||.+..+.++  +++....   +-+ ..++.-..+..
T Consensus       583 tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~  661 (1158)
T 3ei3_A          583 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRS  661 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEES
T ss_pred             EEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEee
Confidence            9999999877666544222223444544432  34678899999987666543  4544321   222 33444444444


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEE-EEcCC-CCCEEEEEeCCCeEEEEEcC---CcEEEEecC
Q psy8448         246 DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSI-HLLPK-NTEHFVVCNKTNTVVIMNMQ---GQIVRSLSS  320 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i-~~~~~-~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~  320 (482)
                      .+..-+.+..+.-..+|.-+ ++..  +...  ....+..+ .|+.. .++-++.. .++.++|..+.   .-..+++.-
T Consensus       662 ~~~~~V~a~s~rp~liy~~~-~~l~--~s~l--~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL  735 (1158)
T 3ei3_A          662 LSTTNVFACSDRPTVIYSSN-HKLV--FSNV--NLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPL  735 (1158)
T ss_dssp             SSCEEEEEESSSCEEEEESS-SSEE--EEEB--SSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEEC
T ss_pred             CCceeEEEECCCCEEEEEcC-CceE--Eecc--ChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeC
Confidence            44433334444555555433 2222  2211  11233333 33222 12344443 45569888873   223333333


Q ss_pred             CcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         321 GKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       321 ~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                          ...+..++++|..+.++.+..+
T Consensus       736 ----~~Tprri~y~~~~~~~~v~~~~  757 (1158)
T 3ei3_A          736 ----YESPRKICYQEVSQCFGVLSSR  757 (1158)
T ss_dssp             ----SSEEEEEEEEGGGTEEEEEEEE
T ss_pred             ----CCCceEEEEcCCCCEEEEEEEe
Confidence                4567899999998877766543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.89  E-value=0.085  Score=46.65  Aligned_cols=192  Identities=11%  Similarity=0.087  Sum_probs=99.0

Q ss_pred             CCCEEEEEeC----C-----CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-----CcEEE
Q psy8448         111 DGQYLITGSV----D-----GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-----GKVKI  176 (482)
Q Consensus       111 ~~~~l~s~~~----d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-----g~i~i  176 (482)
                      ++++++.|+.    +     ..+.+||+.+.+-.........      ......+.+  +++.++.|+.+     ..+.+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~------r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  141 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP------RNRIGVGVI--DGHIYAVGGSHGCIHHNSVER  141 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC------CBTCEEEEE--TTEEEEECCEETTEECCCEEE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC------ccccEEEEE--CCEEEEEcCCCCCcccccEEE
Confidence            5667777765    2     4688999887764433221111      112222223  56677776643     46889


Q ss_pred             EEcCCCeEeEEeeccc-CCCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCceEEE--eeccccceeEEEEcCCCC
Q psy8448         177 WKIATGQCLRKLEKAH-SLGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGH  248 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~  248 (482)
                      ||+.+.+....-.... ......+.+  ++..++.|+.+     ..+.+||+.+.+-...  +......-.++.+  +++
T Consensus       142 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  217 (308)
T 1zgk_A          142 YEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNC  217 (308)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred             ECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCE
Confidence            9988765433211111 112222233  56667777654     4688999877653221  1111111222222  566


Q ss_pred             EEEEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEe
Q psy8448         249 SVLSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSL  318 (482)
Q Consensus       249 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~  318 (482)
                      .++.|+.+     ..+.+||+.+.+-...- ........ .++... ++ .+++.|+.+     ..+.+||........+
T Consensus       218 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          218 IYAAGGYDGQDQLNSVERYDVETETWTFVA-PMKHRRSA-LGITVH-QG-RIYVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTEEEECC-CCSSCCBS-CEEEEE-TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCCccceEEEEeCCCCcEEECC-CCCCCccc-eEEEEE-CC-EEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence            67777654     56999999886543321 11111111 122222 33 677777643     4578888854444333

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.76  E-value=0.027  Score=46.18  Aligned_cols=149  Identities=10%  Similarity=-0.034  Sum_probs=81.8

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA  180 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~  180 (482)
                      ..+.+++|+|+|.+.+.  .+|.++-.+..+.....-+.....--..+ -....++.|.|+|.+.++  .||.|.-++-.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G-w~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGG-WNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSC-GGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccc-cccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            46789999999987666  57777666654432211111100000000 011378899999987666  56988877753


Q ss_pred             CCeEe------EEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce------EEEee-ccccceeEEEEcCCC
Q psy8448         181 TGQCL------RKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM------LKEFR-GHSSFVNDITFTADG  247 (482)
Q Consensus       181 ~~~~~------~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~-~~~~~i~~l~~~~~~  247 (482)
                      +....      ..+-...=..+..+.|.|+|.+.++.  |+.++-....+...      ...+- ..-.....+.|.+++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            32111      11111112457999999999766665  77764433322110      11111 222334557788888


Q ss_pred             CEEEEEeCCCc
Q psy8448         248 HSVLSASSDGT  258 (482)
Q Consensus       248 ~~l~~~~~dg~  258 (482)
                      .+.++.  +|.
T Consensus       194 ~l~~v~--~g~  202 (236)
T 1tl2_A          194 TLFGVQ--GGK  202 (236)
T ss_dssp             CEEEEE--TTE
T ss_pred             cEEEEe--CCe
Confidence            866655  663

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.72  E-value=0.27  Score=43.14  Aligned_cols=200  Identities=9%  Similarity=0.036  Sum_probs=114.0

Q ss_pred             EEEcCCCCEEEEEeCC--------------CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe--
Q psy8448         106 ARFSPDGQYLITGSVD--------------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS--  169 (482)
Q Consensus       106 ~~~s~~~~~l~s~~~d--------------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~--  169 (482)
                      --++++|++|+.+...              ..|+..++..++.....           ...  +..|++++++|+...  
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-----------~~~--~~~~s~~g~~Iy~~~~~  124 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-----------PDP--CIYASLIGNYIYYLHYD  124 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-----------CSC--EEEEEEETTEEEEEEES
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-----------cCC--ccEEEEeCCEEEEEeec
Confidence            4468899998877532              36777777655422211           111  236778888888876  


Q ss_pred             CC--CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCceEEEeeccccceeEEEEcCC
Q psy8448         170 QS--GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD  246 (482)
Q Consensus       170 ~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~  246 (482)
                      .+  ..|...++... ....+. .+..    .+++++++.|+-.+. ...|...++..+.....+.+   .. ...+.|+
T Consensus       125 ~~~~~~Iy~~~~dGs-~~~~lt-~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~  194 (302)
T 3s25_A          125 TQTATSLYRIRIDGE-EKKKIK-NHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLD  194 (302)
T ss_dssp             SSSCEEEEEEETTSC-CCEEEE-SSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEE
T ss_pred             CCCCceEEEEECCCC-CeEEEe-CCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeec
Confidence            33  45555565533 334442 2222    456778888886665 56888889876654433332   22 2345688


Q ss_pred             CCEEEEEeCC--CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe--CCCeEEEEEcCCcEEEEecCCc
Q psy8448         247 GHSVLSASSD--GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN--KTNTVVIMNMQGQIVRSLSSGK  322 (482)
Q Consensus       247 ~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~  322 (482)
                      +.+|+-...+  ..|..-++..... ..+.   .  ..+  ..++|.+ ..++.+.  ..+.|...+++|...+.+... 
T Consensus       195 g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt---~--~~~--~~~~~~g-~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~-  264 (302)
T 3s25_A          195 DTNVYYMDVNRDNAIVHVNINNPNP-VVLT---E--ANI--EHYNVYG-SLIFYQRGGDNPALCVVKNDGTGFKELAKG-  264 (302)
T ss_dssp             TTEEEEEEGGGTTEEEEECSSSCCC-EECS---C--SCE--EEEEEET-TEEEEEECSSSCEEEEEETTSCCCEEEEES-
T ss_pred             CCEEEEEEcCCCcEEEEEECCCCCe-EEEe---C--CCc--ceEEECC-CEEEEEECCCCcEEEEEECCCCccEEeeCC-
Confidence            9988876643  3566677765542 3332   1  222  3377777 4555442  346777778877655555432 


Q ss_pred             ccCcCEEEEEEcCCCCEEEEEe
Q psy8448         323 REGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       323 ~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                          .+.  .+++.+.+|+-..
T Consensus       265 ----~~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          265 ----EFC--NINVTSQYVYFTD  280 (302)
T ss_dssp             ----CEE--EEEECSSEEEEEE
T ss_pred             ----ccc--eEEEeCCEEEEEE
Confidence                233  3344566666544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.71  E-value=0.15  Score=50.84  Aligned_cols=233  Identities=10%  Similarity=0.073  Sum_probs=115.8

Q ss_pred             CCCCEEEEEeCC----CeEEEEecCCCceeecc-ccccccccccccccEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q psy8448         110 PDGQYLITGSVD----GFIEVWNFTTGKIRKDL-KYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS------GKVKIWK  178 (482)
Q Consensus       110 ~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~-~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d------g~i~iwd  178 (482)
                      .++.+++.|+.+    ..+.+||..+++..... .... .....-...-..+.+..+++.++.|+.+      ..+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~-~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSS-SEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCC-SCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCC-CCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            456777777743    46889998887644322 1000 0000001122233332267777777744      3578899


Q ss_pred             cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC--eEEEEeCCCCceEEEe-----eccccceeEEEEcCC-CCEE
Q psy8448         179 IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT--YVRIHGLKSGKMLKEF-----RGHSSFVNDITFTAD-GHSV  250 (482)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~-----~~~~~~i~~l~~~~~-~~~l  250 (482)
                      +.+.+....-.......-.+++...++..++.|+.++  .+.+||+.+.+-...-     ......-.++.+..+ ++.+
T Consensus       475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            8876543221111111122333324778888887655  6999999876532211     111222234555555 5666


Q ss_pred             EEEeC--C-----CcEEEEECCCCce-----eeeeecc-CCCccceeEEEEcCCCCCEEEEEeC--------CCeEEEEE
Q psy8448         251 LSASS--D-----GTVKMWNLKTTEC-----TSTFKSL-GASDIAVNSIHLLPKNTEHFVVCNK--------TNTVVIMN  309 (482)
Q Consensus       251 ~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~--------d~~i~i~d  309 (482)
                      +.|+.  +     ..+.+||+.+.+.     -..+... ...... .++....++ .+++.|+.        ...+.+||
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~-~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG-SQIKYITPR-KLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS-CEEEEEETT-EEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc-ceEEEeCCC-EEEEECCccCCCCCCCCCeEEEEE
Confidence            77765  2     3588999988761     1122110 011111 122333324 67777763        35689999


Q ss_pred             cCCcEEEEecCCccc-----CcC-EEEEEEcCCCCEEEEEeC
Q psy8448         310 MQGQIVRSLSSGKRE-----GGD-FLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       310 ~~~~~~~~~~~~~~~-----~~~-v~~~~~~~~g~~l~~~~~  345 (482)
                      ...............     ... -.+++...+|+.++.||.
T Consensus       633 ~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          633 PLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             TTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             CCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence            965554443321110     000 023444456677777764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.004  Score=55.52  Aligned_cols=113  Identities=15%  Similarity=0.115  Sum_probs=73.9

Q ss_pred             CEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEc--cCCCEEEEE--ECCCeEEEEeCCCCceEEEeec----c
Q psy8448         163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFS--RDNSQILTA--SFDTYVRIHGLKSGKMLKEFRG----H  234 (482)
Q Consensus       163 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~----~  234 (482)
                      ..++.++.||.|.-+|..+|+...++......++....-.  +.+..++.+  +.||.|..++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            4788999999999999999999999854321233221111  112234444  5899999999988865544431    1


Q ss_pred             ccceeE---EEE-c----CCCCEEEEEeCCCcEEEEECCCCceeeeeec
Q psy8448         235 SSFVND---ITF-T----ADGHSVLSASSDGTVKMWNLKTTECTSTFKS  275 (482)
Q Consensus       235 ~~~i~~---l~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  275 (482)
                      ..++..   ... .    ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            111211   000 0    1456788999999999999999999888763

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.66  E-value=0.32  Score=43.08  Aligned_cols=173  Identities=12%  Similarity=0.109  Sum_probs=84.9

Q ss_pred             EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC----CC-------eEEEEeCCCCceEEE--
Q psy8448         164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF----DT-------YVRIHGLKSGKMLKE--  230 (482)
Q Consensus       164 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~--  230 (482)
                      .++.|+.  .+..||..+++....-...........+...++..++.|+.    ++       .+..||..+.+-...  
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444443  48899998877544211111122223333456777788773    11       277889877653221  


Q ss_pred             eeccccceeEEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC--
Q psy8448         231 FRGHSSFVNDITFTADGHSVLSASSD-------GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK--  301 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--  301 (482)
                      +...... .+++.. ++..++.|+.+       ..+.+||..+.+-...-. ....... .+++. .++ .+++.|+.  
T Consensus        96 ~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~-~~~~~-~~~-~iyv~GG~~~  169 (318)
T 2woz_A           96 LPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYG-HNVIS-HNG-MIYCLGGKTD  169 (318)
T ss_dssp             BSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEES-CEEEE-ETT-EEEEECCEES
T ss_pred             CCccccc-cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccc-cEEEE-ECC-EEEEEcCCCC
Confidence            1111111 122222 56677777653       248889988765433211 1111111 12222 333 66676653  


Q ss_pred             ----CCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCC
Q psy8448         302 ----TNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       302 ----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d  346 (482)
                          -..+.+||........+............+.+  +++.++.|+.+
T Consensus       170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  216 (318)
T 2woz_A          170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVT  216 (318)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             CCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcC
Confidence                24588999965555555432221222223333  56677777654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.61  E-value=0.23  Score=44.43  Aligned_cols=146  Identities=11%  Similarity=0.077  Sum_probs=83.0

Q ss_pred             CCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE--EEe----eccccceeEEEEcCC---CCEEEEE-e--CCCcEE
Q psy8448         193 SLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML--KEF----RGHSSFVNDITFTAD---GHSVLSA-S--SDGTVK  260 (482)
Q Consensus       193 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~----~~~~~~i~~l~~~~~---~~~l~~~-~--~dg~i~  260 (482)
                      -.....|+|.|+|.++++-...|.|++++...++..  ..+    .........|+++|+   +..|... +  .++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            345789999999986665544899999987665532  211    123456789999995   3445443 2  345566


Q ss_pred             EEECCCCc--------eeeeeecc-CCCccceeEEEEcCCCCCEEEEEeC-------------CCeEEEEEcCCcE----
Q psy8448         261 MWNLKTTE--------CTSTFKSL-GASDIAVNSIHLLPKNTEHFVVCNK-------------TNTVVIMNMQGQI----  314 (482)
Q Consensus       261 i~d~~~~~--------~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~----  314 (482)
                      -|.+..+.        ....+... ....+.-..|.|.|+| .++++.+.             .|.|.-.+.++..    
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            67665421        11111111 1222345679999998 66666442             2445545554431    


Q ss_pred             ----EEEecCCcccCcCEEEEEEcCCCCEEEE
Q psy8448         315 ----VRSLSSGKREGGDFLCCTTSPRGEWIYC  342 (482)
Q Consensus       315 ----~~~~~~~~~~~~~v~~~~~~~~g~~l~~  342 (482)
                          ...+...   ......++|+|+|.+.++
T Consensus       190 Pf~~~~i~a~G---~RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          190 PFPGSPVYSYG---HRNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             SSTTCCEEEBC---CSBCCEEEECTTCCEEEE
T ss_pred             CCCCCeEEeeC---CCCcceEEECCCCCEEEE
Confidence                1111111   123457899998876554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.56  E-value=0.28  Score=44.30  Aligned_cols=145  Identities=8%  Similarity=0.028  Sum_probs=73.8

Q ss_pred             CCCEEEEEeC-CCeEEEEecCC--CceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-C---------CcEEEE
Q psy8448         111 DGQYLITGSV-DGFIEVWNFTT--GKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-S---------GKVKIW  177 (482)
Q Consensus       111 ~~~~l~s~~~-dg~v~iwd~~~--~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-d---------g~i~iw  177 (482)
                      ++++++.|+. ...+.+||+.+  .+-......... .    .....++.+  +++.++.|+. +         ..+.+|
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~-~----R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~y   91 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGG-P----RDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKY   91 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTC-C----CBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCC-c----CccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEE
Confidence            5667777763 35788999864  332221111100 0    111222222  5667777765 2         468899


Q ss_pred             EcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEEEECC---------------------------------------CeE
Q psy8448         178 KIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILTASFD---------------------------------------TYV  217 (482)
Q Consensus       178 d~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d---------------------------------------g~i  217 (482)
                      |+.+.+-...-... ....-.+++. .+++.++.|+.+                                       ..+
T Consensus        92 d~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  170 (357)
T 2uvk_A           92 NPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL  170 (357)
T ss_dssp             ETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred             eCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence            99877543321111 1111122222 467777888754                                       579


Q ss_pred             EEEeCCCCceEE--EeeccccceeEEEEcCCCCEEEEEeC------CCcEEEEEC
Q psy8448         218 RIHGLKSGKMLK--EFRGHSSFVNDITFTADGHSVLSASS------DGTVKMWNL  264 (482)
Q Consensus       218 ~i~d~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~------dg~i~i~d~  264 (482)
                      .+||+.+.+-..  .+......-.+++.. +++.++.|+.      ...+.+||+
T Consensus       171 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          171 LSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             EEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             EEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            999998765322  222111111233332 5566666653      345777887

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.52  E-value=0.83  Score=46.17  Aligned_cols=239  Identities=13%  Similarity=0.132  Sum_probs=131.0

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceee--ccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRK--DLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      ..|.++.-..+|.+.+ |+.+| +..++..+++...  .+....... ......|.++.-.+++++ -.|+ ++-+..+|
T Consensus       324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~v~~i~~d~~g~l-Wigt-~~GL~~~~  398 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTY-PLSHNRIRHIYEDKEQQL-WIAT-DGSINRYD  398 (758)
T ss_dssp             CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSS-CCSCSCEEEEEECTTSCE-EEEE-TTEEEEEE
T ss_pred             ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCC-CCCCCceEEEEECCCCCE-EEEe-CCcHhhcC
Confidence            4688888888887655 44555 6667655432111  111000000 001346888888888764 4455 45689999


Q ss_pred             cCCCeEeEEeecc-----cCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-----ceE---EEee---c-cccceeEE
Q psy8448         179 IATGQCLRKLEKA-----HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-----KML---KEFR---G-HSSFVNDI  241 (482)
Q Consensus       179 ~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~~---~-~~~~i~~l  241 (482)
                      ..+++...-....     ....|.++...+++ .|..|+..+-|.++|.++.     ...   ..+.   + ....|.++
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i  477 (758)
T 3ott_A          399 YATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQI  477 (758)
T ss_dssp             TTTTEEEEEEEECCC--CBSSSEEEEEECTTS-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEE
T ss_pred             cCCCcEEEeecCCCcCCCCCceEEEEEEcCCC-CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeE
Confidence            8877543321101     22457888776665 5777887777888885421     111   1111   1 12358899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCC
Q psy8448         242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSG  321 (482)
Q Consensus       242 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  321 (482)
                      ...++|+..+.++..+-|..+|..+++..............+.++....+| .+. .++.. -+..++........+...
T Consensus       478 ~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~lW-igt~~-Gl~~~~~~~~~~~~~~~~  554 (758)
T 3ott_A          478 IPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG-LLW-VGFHG-GVMRINPKDESQQSISFG  554 (758)
T ss_dssp             EECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS-CEE-EEETT-EEEEECC--CCCCBCCCC
T ss_pred             EEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC-CEE-EEecC-ceEEEecCCCceEEeccc
Confidence            999988866533334458889988765433211100113457778777766 444 45554 477888743333333211


Q ss_pred             cccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         322 KREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       322 ~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ......|.++... +| .|..++.+|..+
T Consensus       555 gl~~~~i~~i~~~-~g-~lWi~t~~Gl~~  581 (758)
T 3ott_A          555 SFSNNEILSMTCV-KN-SIWVSTTNGLWI  581 (758)
T ss_dssp             C---CCEEEEEEE-TT-EEEEEESSCEEE
T ss_pred             CCCccceEEEEEC-CC-CEEEECCCCeEE
Confidence            1123457777664 55 566666777544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.51  E-value=0.33  Score=45.47  Aligned_cols=106  Identities=10%  Similarity=0.131  Sum_probs=61.3

Q ss_pred             CCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE--EEeec------cccceeEEEEcCC---CCEEEEEeC-------
Q psy8448         194 LGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML--KEFRG------HSSFVNDITFTAD---GHSVLSASS-------  255 (482)
Q Consensus       194 ~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~------~~~~i~~l~~~~~---~~~l~~~~~-------  255 (482)
                      .....|+|.|+|+++++-...+.|++++..+++..  ..+..      .......|+|+|+   +..|.+...       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35679999999986665443347998887655432  22221      2345679999995   555554432       


Q ss_pred             ------CCcEEEEECCCC--ce---eeeeecc-CCCccceeEEEEcCCCCCEEEEEe
Q psy8448         256 ------DGTVKMWNLKTT--EC---TSTFKSL-GASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       256 ------dg~i~i~d~~~~--~~---~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                            ...|.-|++...  ..   ...+... ....+....|+|.|+| .++++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                  234666665432  11   1111111 1223456899999999 6666644

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.50  E-value=0.58  Score=44.19  Aligned_cols=220  Identities=11%  Similarity=0.121  Sum_probs=128.4

Q ss_pred             CCCEEEEEe-CCCeEEEEecCCCceeeccccccccccccccccEEEEEEc--CCCCEEEEEeC-------CCcE------
Q psy8448         111 DGQYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS--RDSEMLASGSQ-------SGKV------  174 (482)
Q Consensus       111 ~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~--~~~~~l~~~~~-------dg~i------  174 (482)
                      ||++|+.-. .+..|-.-++..-++.+.+..+.       ...+.++.|-  |+-.|++.++.       ||..      
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn-------~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~  213 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPN-------VQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDE  213 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTT-------CSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTST
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCC-------CcCcccccccccCCccEEEecceeeccCCCCCcccccCCh
Confidence            678888776 45678888888877766665543       3567788876  67777777764       2321      


Q ss_pred             ------EEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC---------------------------------
Q psy8448         175 ------KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT---------------------------------  215 (482)
Q Consensus       175 ------~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---------------------------------  215 (482)
                            ...|..+.+...++.  -......+...+++.+.++.+.+.                                 
T Consensus       214 ~~y~~f~~iD~~tm~v~~Qv~--v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~  291 (638)
T 3sbq_A          214 NSYTMYNAIDAETMEMAFQVI--VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGD  291 (638)
T ss_dssp             TEEEEEEEEETTTCSEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTC
T ss_pred             hhceEEEEEcCCccEEEEEEE--cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCC
Confidence                  112222222222221  122333445566777777766431                                 


Q ss_pred             -------eEEEEeCCC----CceEEEeeccccceeEEEEcCCCCEEEEEeC-CCcEEEEECCCCce-----e----eeee
Q psy8448         216 -------YVRIHGLKS----GKMLKEFRGHSSFVNDITFTADGHSVLSASS-DGTVKMWNLKTTEC-----T----STFK  274 (482)
Q Consensus       216 -------~i~i~d~~~----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~-----~----~~~~  274 (482)
                             .|.+.|.+.    +..+..+-.-......+..+|||+++++++. +.++.++|++....     +    ..+.
T Consensus       292 ~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~  371 (638)
T 3sbq_A          292 FITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIV  371 (638)
T ss_dssp             CBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEE
T ss_pred             eEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceE
Confidence                   244444443    2222222222344567899999999988764 78899999884211     0    0010


Q ss_pred             ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----------cEEEEecCCcccCcCEEEEEE------cCCC
Q psy8448         275 SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG-----------QIVRSLSSGKREGGDFLCCTT------SPRG  337 (482)
Q Consensus       275 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-----------~~~~~~~~~~~~~~~v~~~~~------~~~g  337 (482)
                      ....-.......+|.++| ..+.+---|..|.-|++..           ..+..+..+-    .+-.+.-      .++|
T Consensus       372 ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y----qpGH~~~~~get~~~dG  446 (638)
T 3sbq_A          372 GEPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY----QPGHLHASLCETNEADG  446 (638)
T ss_dssp             ECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS----CEEEEEETTTTSTTCCS
T ss_pred             eeccCCCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccccc----CCcccccCCCccCCCCc
Confidence            000223455788999998 6777777999999999842           3455555432    2223322      5788


Q ss_pred             CEEEEEe
Q psy8448         338 EWIYCVG  344 (482)
Q Consensus       338 ~~l~~~~  344 (482)
                      ++|++..
T Consensus       447 k~lv~ln  453 (638)
T 3sbq_A          447 KWLVALS  453 (638)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEec
Confidence            8888765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.98  E-value=0.12  Score=46.71  Aligned_cols=195  Identities=9%  Similarity=0.071  Sum_probs=91.9

Q ss_pred             CCCEEEEEeC-C---------CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC---------
Q psy8448         111 DGQYLITGSV-D---------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS---------  171 (482)
Q Consensus       111 ~~~~l~s~~~-d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d---------  171 (482)
                      ++++++.|+. +         ..+.+||+.+.+-.......+. .    .....++.  .+++.++.|+.+         
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~-~----r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~  137 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPM-G----MAGHVTFV--HNGKAYVTGGVNQNIFNGYFE  137 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSS-C----CSSEEEEE--ETTEEEEEECCCHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCc-c----cccceEEE--ECCEEEEEeCcCCCcCccccc
Confidence            5667777765 2         4689999988764433222111 0    11222222  467777888754         


Q ss_pred             ------------------------------CcEEEEEcCCCeEeEEeecccCCCe-EEEEEccCCCEEEEEEC------C
Q psy8448         172 ------------------------------GKVKIWKIATGQCLRKLEKAHSLGV-TCIQFSRDNSQILTASF------D  214 (482)
Q Consensus       172 ------------------------------g~i~iwd~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~l~~~~~------d  214 (482)
                                                    ..+.+||+.+.+....-........ .+++.. ++..++.|+.      .
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~  216 (357)
T 2uvk_A          138 DLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRT  216 (357)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEEC
T ss_pred             chhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCccc
Confidence                                          4789999887754433211111111 222222 5666666653      3


Q ss_pred             CeEEEEeC--CCCceE--EEeeccccceeEEEEcCCCCEEEEEeCC----------------------CcEEEEECCCCc
Q psy8448         215 TYVRIHGL--KSGKML--KEFRGHSSFVNDITFTADGHSVLSASSD----------------------GTVKMWNLKTTE  268 (482)
Q Consensus       215 g~i~i~d~--~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~  268 (482)
                      ..+.+||+  .+.+-.  ..+........+.+...++..++.|+.+                      ..+.+||+.+.+
T Consensus       217 ~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~  296 (357)
T 2uvk_A          217 DAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK  296 (357)
T ss_dssp             CCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred             CceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc
Confidence            45777877  333221  1111111111111222356666766632                      257889988765


Q ss_pred             eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC------eEEEEEcC-CcEEEE
Q psy8448         269 CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN------TVVIMNMQ-GQIVRS  317 (482)
Q Consensus       269 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~------~i~i~d~~-~~~~~~  317 (482)
                      -... .........-.++.  .++ .+++.|+.++      .+.+++++ ++....
T Consensus       297 W~~~-~~~p~~r~~~~~~~--~~~-~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          297 WDKS-GELSQGRAYGVSLP--WNN-SLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CEEE-EECSSCCBSSEEEE--ETT-EEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eeeC-CCCCCCcccceeEE--eCC-EEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            3322 11111111112222  234 6777777542      35556774 443333

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.91  E-value=1.2  Score=44.38  Aligned_cols=152  Identities=9%  Similarity=0.105  Sum_probs=81.7

Q ss_pred             CCCCEEEEEeCC----CcEEEEEcCCCeEeEEe-e-----cccCCCeEEEEEcc-CCCEEEEEECC------CeEEEEeC
Q psy8448         160 RDSEMLASGSQS----GKVKIWKIATGQCLRKL-E-----KAHSLGVTCIQFSR-DNSQILTASFD------TYVRIHGL  222 (482)
Q Consensus       160 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~~~v~~i~~~~-~~~~l~~~~~d------g~i~i~d~  222 (482)
                      .++..++.|+.+    ..+.+||..+++....- .     ......-.+++..+ ++..++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    46889998877543322 1     01111122333333 67777777644      35888998


Q ss_pred             CCCceEE--EeeccccceeEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeeee--ccCCCccceeEEEEcCCCCCEE
Q psy8448         223 KSGKMLK--EFRGHSSFVNDITFTADGHSVLSASSDG--TVKMWNLKTTECTSTFK--SLGASDIAVNSIHLLPKNTEHF  296 (482)
Q Consensus       223 ~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l  296 (482)
                      .+.+-..  .+..... -.+++...++..++.|+.++  .+.+||..+.+-...-.  ...........+.+......++
T Consensus       476 ~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            8754322  1111111 12333324778888887654  69999998865432211  0111122223355555423677


Q ss_pred             EEEeC--C-----CeEEEEEcCC
Q psy8448         297 VVCNK--T-----NTVVIMNMQG  312 (482)
Q Consensus       297 ~~~~~--d-----~~i~i~d~~~  312 (482)
                      +.|+.  +     +.+.+||+..
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~  577 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDA  577 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECT
T ss_pred             EECCcCCCCCeeeCcEEEEEccC
Confidence            77765  2     4688999843

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.45  E-value=2.9  Score=38.21  Aligned_cols=220  Identities=8%  Similarity=0.023  Sum_probs=107.7

Q ss_pred             CEEEEEeCCCeEEEEecCC-CceeeccccccccccccccccEEEEEEcC-CCCEEEEEeCCC----cEEEEEcCCCeEeE
Q psy8448         113 QYLITGSVDGFIEVWNFTT-GKIRKDLKYQAQDNFMLMEEAVMSLAYSR-DSEMLASGSQSG----KVKIWKIATGQCLR  186 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~~~~~dg----~i~iwd~~~~~~~~  186 (482)
                      ..|..|+..| +.+++... ++.-.......      ....|.+|++.| +...|.+++..|    .|...+ ..++.-.
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~------~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~   94 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVF------LGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWT   94 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEES------TTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCE
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccC------CCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCce
Confidence            3566777767 55555432 22111111000      135699999998 334455555444    343332 2333222


Q ss_pred             Eeecc-------------cCCCeEEEEEcc-C-CCEEEEEECCCeEEEEeCCCCceEEEeec------------------
Q psy8448         187 KLEKA-------------HSLGVTCIQFSR-D-NSQILTASFDTYVRIHGLKSGKMLKEFRG------------------  233 (482)
Q Consensus       187 ~~~~~-------------~~~~v~~i~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------  233 (482)
                      .+...             ....|.++++.| + ...+.++...+.|...+ +.++.-..+..                  
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~  173 (394)
T 3b7f_A           95 EATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGT  173 (394)
T ss_dssp             ECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred             ECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCC
Confidence            22111             112477888987 2 45666666666666554 23333222211                  


Q ss_pred             -cccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeec-cCC---------CccceeEEEEcCCCCCEEEEEeC
Q psy8448         234 -HSSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKS-LGA---------SDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       234 -~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~---------~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                       ....+.+|.++|. ...|..+..++.|...+ ..++.-..+.. ...         ....+.++.+.|..+..++++..
T Consensus       174 ~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~  252 (394)
T 3b7f_A          174 PDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH  252 (394)
T ss_dssp             CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET
T ss_pred             CCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC
Confidence             1235788999873 34455555444444332 22322222210 000         01348899999975567777765


Q ss_pred             CCeEEEEEcCCcEEEEecCCcccC---cCEEEEEEcCC-CCEEEEEe
Q psy8448         302 TNTVVIMNMQGQIVRSLSSGKREG---GDFLCCTTSPR-GEWIYCVG  344 (482)
Q Consensus       302 d~~i~i~d~~~~~~~~~~~~~~~~---~~v~~~~~~~~-g~~l~~~~  344 (482)
                      .+ |...+-.++....+.... ..   ..+.+++++|. ...|+++.
T Consensus       253 ~g-l~~s~D~G~tW~~~~~~l-~~~~~~~~~~i~~~p~~~~~l~~~t  297 (394)
T 3b7f_A          253 CG-IYRMDRREGVWKRIGDAM-PREVGDIGFPIVVHQRDPRTVWVFP  297 (394)
T ss_dssp             TE-EEEEETTTTEEECGGGGS-CTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred             Ce-EEEeCCCCCcceECCCCC-CCCCccceEEEEECCCCCCEEEEEe
Confidence            44 555554566655554211 11   33567888763 34444443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=93.95  E-value=3.6  Score=37.51  Aligned_cols=182  Identities=14%  Similarity=0.067  Sum_probs=92.1

Q ss_pred             CEEEEEeCCCcEEEEEcCC-CeEeEEe-ecccCCCeEEEEEcc-CCCEEEEEECCC----eEEEEeCCCCceEEEeec--
Q psy8448         163 EMLASGSQSGKVKIWKIAT-GQCLRKL-EKAHSLGVTCIQFSR-DNSQILTASFDT----YVRIHGLKSGKMLKEFRG--  233 (482)
Q Consensus       163 ~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~~v~~i~~~~-~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~--  233 (482)
                      ..|.+++..| +.+++... +.....+ .......|.+|++.| +...|.+++..|    .|...+ +.++.-..+..  
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence            3677777776 55555332 2222211 012345699999998 334455555455    454443 33332222211  


Q ss_pred             ------------cccceeEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeecc----------------CCCccce
Q psy8448         234 ------------HSSFVNDITFTAD--GHSVLSASSDGTVKMWNLKTTECTSTFKSL----------------GASDIAV  283 (482)
Q Consensus       234 ------------~~~~i~~l~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------~~~~~~v  283 (482)
                                  ....|.++++.|.  ...+.+++..+.|...+ ..++.-..+...                ......+
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i  179 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM  179 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence                        1124778899872  45566666555554443 223222222110                0122457


Q ss_pred             eEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcc----c------CcCEEEEEEcCC-CCEEEEEeCCc
Q psy8448         284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKR----E------GGDFLCCTTSPR-GEWIYCVGEDM  347 (482)
Q Consensus       284 ~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~------~~~v~~~~~~~~-g~~l~~~~~dg  347 (482)
                      .+|.+.|.....++++..++.|...+-.++....+.....    .      ...+.+++++|+ ...|+++...+
T Consensus       180 ~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             EEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             eEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            8899988543455555555555544444554444432110    0      134889999986 46777777655

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.51  E-value=4.9  Score=37.58  Aligned_cols=237  Identities=11%  Similarity=0.105  Sum_probs=114.4

Q ss_pred             cEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeccccccccccc-----cccccEEEEEEcCC---CCEEEEE-eC-
Q psy8448         102 HVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM-----LMEEAVMSLAYSRD---SEMLASG-SQ-  170 (482)
Q Consensus       102 ~v~~~~~s~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-----~h~~~i~~l~~~~~---~~~l~~~-~~-  170 (482)
                      .-..|+|.|+|. .|+++...|.|++++.........+. .....+.     ..+.....|+|+|+   ..+|.+. +. 
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~-~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYL-DIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSE-ECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeec-CCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            467899999996 45555678999999754221111110 0000010     12457889999996   2333332 21 


Q ss_pred             -C----------CcEEEEEcCC----------CeEeEEeec-ccCCCeEEEEEccCCCEEEEEECC--------------
Q psy8448         171 -S----------GKVKIWKIAT----------GQCLRKLEK-AHSLGVTCIQFSRDNSQILTASFD--------------  214 (482)
Q Consensus       171 -d----------g~i~iwd~~~----------~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d--------------  214 (482)
                       +          ..|.-|.+..          .+.+..+.. ...-....|+|.|||.+.++.+..              
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~  173 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS  173 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence             1          1344455532          123333311 112236789999999877765543              


Q ss_pred             ---CeEEEEeCCCC------c---------------eEEEeeccccceeEEEEcCC-----CC-EEEEEeCCC----cEE
Q psy8448         215 ---TYVRIHGLKSG------K---------------MLKEFRGHSSFVNDITFTAD-----GH-SVLSASSDG----TVK  260 (482)
Q Consensus       215 ---g~i~i~d~~~~------~---------------~~~~~~~~~~~i~~l~~~~~-----~~-~l~~~~~dg----~i~  260 (482)
                         |.|.-.|.+..      .               .+. -.+|.. ...++|+|.     |+ ++..+...|    .-.
T Consensus       174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~-a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e  251 (463)
T 2wg3_C          174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF-AHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR  251 (463)
T ss_dssp             SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE-EECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred             CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE-EECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence               23444454431      0               011 123333 467899996     34 344433212    123


Q ss_pred             EEECCCCc------eeeeeeccCCC-ccceeEEEEcCCC-----CCEEEEEeCCCeEEEEEcCCc----EEEEec-C---
Q psy8448         261 MWNLKTTE------CTSTFKSLGAS-DIAVNSIHLLPKN-----TEHFVVCNKTNTVVIMNMQGQ----IVRSLS-S---  320 (482)
Q Consensus       261 i~d~~~~~------~~~~~~~~~~~-~~~v~~i~~~~~~-----~~~l~~~~~d~~i~i~d~~~~----~~~~~~-~---  320 (482)
                      |..+..+.      ++..+.   .+ ...+..+.|-...     ...++++...+.|....++..    ....+. .   
T Consensus       252 i~~i~~G~~yG~~~P~~~~~---~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~  328 (463)
T 2wg3_C          252 ILQIIKGKDYESEPSLLEFK---PFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSG  328 (463)
T ss_dssp             EEEEC----CCSCCCCEECC---C----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETT
T ss_pred             EeeeccCCCCCCCCCeEEee---CCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcc
Confidence            33333222      222221   11 1456677774321     122455555576666655321    111221 0   


Q ss_pred             --CcccCcCEEEEEEcCCCCEEEEEe
Q psy8448         321 --GKREGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       321 --~~~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                        .......+..+...|||.++++..
T Consensus       329 ~~~~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          329 SCRGYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             SSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred             cccccccCcceEEEECCCCCEEEEec
Confidence              011135789999999998888765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.43  E-value=3.5  Score=35.62  Aligned_cols=217  Identities=13%  Similarity=0.010  Sum_probs=111.7

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT  181 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~  181 (482)
                      .|..++....-. ++. . ||.|+.|-......+.. +..       ....|..++...+.. ++. . ||.|..|-...
T Consensus        25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~-p~~-------~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~   90 (282)
T 3qhy_B           25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTM-PAA-------TQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNE   90 (282)
T ss_dssp             SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSC-CGG-------GGSCCCEEEECSSEE-EEE-E-TTEEEEEECCT
T ss_pred             CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCC-Ccc-------CCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCC
Confidence            466666654322 222 4 89999997654322211 111       123576776654432 333 4 89999997543


Q ss_pred             CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEE
Q psy8448         182 GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKM  261 (482)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i  261 (482)
                      ...+.. ...-...|..++...+  +.+.-. +|.|+.|-....-.+.........|..++...+.  .+.-. ||.|..
T Consensus        91 ~Gqlg~-P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~  163 (282)
T 3qhy_B           91 DGQTTV-PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIA  163 (282)
T ss_dssp             TSTTCC-CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEE
T ss_pred             CCCCCC-CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEE
Confidence            222111 1112346777777544  333344 9999999765422111111223457666654432  23334 788999


Q ss_pred             EECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--CcEEEEecCCcccCcCEEEEEEcCCCCE
Q psy8448         262 WNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQIVRSLSSGKREGGDFLCCTTSPRGEW  339 (482)
Q Consensus       262 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~~  339 (482)
                      |-......+..-.   .....|..++.-..  ..++.  .+|.+..|-..  ++.-...    .....|..++..... .
T Consensus       164 wG~n~~gqlg~p~---~~~~~v~~i~~G~~--hs~al--~~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~h-~  231 (282)
T 3qhy_B          164 WGDNYFGQTTVPA---EAQSGVDDVAGGIF--HSLAL--KDGKVIAWGDNRYKQTTVPT----EALSGVSAIASGEWY-S  231 (282)
T ss_dssp             EECCTTSTTSCCG---GGGSSEEEEEECSS--EEEEE--ETTEEEEEECCTTSTTCCCG----GGGSSCCEEEECSSC-E
T ss_pred             ecCCCCCCCCCce---ecCCCeEEEEecCC--EEEEE--ECCeEEEEECCCCCCCCCCc----ccCCCceEEEcCCCE-E
Confidence            9765422111110   12345777766543  23344  59999999763  3321111    113456667665443 3


Q ss_pred             EEEEeCCcEEEEEe
Q psy8448         340 IYCVGEDMVLVVRL  353 (482)
Q Consensus       340 l~~~~~dg~i~iw~  353 (482)
                      ++ -. ||.++.|=
T Consensus       232 ~a-l~-~g~v~~wG  243 (282)
T 3qhy_B          232 LA-LK-NGKVIAWG  243 (282)
T ss_dssp             EE-EE-TTEEEEES
T ss_pred             EE-EE-CCEEEEec
Confidence            33 33 99999663

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=93.06  E-value=4.9  Score=36.28  Aligned_cols=216  Identities=9%  Similarity=0.013  Sum_probs=121.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEeC---------------CCeEEEEecCCC--ceeeccccccccccccccccEEEEEEc---
Q psy8448         100 KSHVECARFSPDGQYLITGSV---------------DGFIEVWNFTTG--KIRKDLKYQAQDNFMLMEEAVMSLAYS---  159 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~---------------dg~v~iwd~~~~--~~~~~~~~~~~~~~~~h~~~i~~l~~~---  159 (482)
                      =-.|..+...+++++-+.=+.               --.|.+||+.++  +.++++..+.....  ....+..+.+.   
T Consensus        86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~--~~S~l~di~VD~~~  163 (381)
T 3q6k_A           86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVE--KPTYFGGFAVDVAN  163 (381)
T ss_dssp             SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCC--CGGGEEEEEEEESC
T ss_pred             eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcc--cCCccceEEEeccc
Confidence            346888888887766553211               126889999999  88888776543221  23567888887   


Q ss_pred             CC----CCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeecc
Q psy8448         160 RD----SEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH  234 (482)
Q Consensus       160 ~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  234 (482)
                      |+    +.++..+. ..+-|.++|+.+++..+..   |..      |.|+....++.  +|.-.-              -
T Consensus       164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~---~~~------~~pd~~~~~~i--~G~~~~--------------~  218 (381)
T 3q6k_A          164 PKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT---HPT------FKAERPTKFDY--GGKEYE--------------F  218 (381)
T ss_dssp             TTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE---CGG------GSCCSCEEEEE--TTEEEE--------------E
T ss_pred             CCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc---cCC------CccccCcceEE--CCEEeE--------------e
Confidence            22    33444443 4678999999999877765   221      33441111111  222111              1


Q ss_pred             ccceeEEEEcCC----CCEEEEEeCCCcEEEEECC-----CCceeeeeeccCCC--ccceeEEEEcCCCCCEEEEEeCCC
Q psy8448         235 SSFVNDITFTAD----GHSVLSASSDGTVKMWNLK-----TTECTSTFKSLGAS--DIAVNSIHLLPKNTEHFVVCNKTN  303 (482)
Q Consensus       235 ~~~i~~l~~~~~----~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~~~~~d~  303 (482)
                      ...+..|+++|+    ++.|.-....+ -++|.+.     +......++.+...  ...-..+++.+..+.++++--..+
T Consensus       219 ~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~  297 (381)
T 3q6k_A          219 KAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTK  297 (381)
T ss_dssp             CCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSS
T ss_pred             ccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCC
Confidence            245888999987    77777666554 2334332     22211222211111  123334566533337777778889


Q ss_pred             eEEEEEcCC-----cEEEEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448         304 TVVIMNMQG-----QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       304 ~i~i~d~~~-----~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      .|..|+..+     .....+.... .-.....+.+.++|.+.+..+
T Consensus       298 aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          298 QVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             EEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred             eEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence            999999865     2223333222 244567788877776555443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=90.84  E-value=8.2  Score=34.10  Aligned_cols=232  Identities=12%  Similarity=0.132  Sum_probs=129.1

Q ss_pred             CCEEEEEeCCCeEEEEecCCCc-------eeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc---CC
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGK-------IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI---AT  181 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~---~~  181 (482)
                      ...+++-+.+|.|+--.+.+-+       -.......       ..+.+..+........|+.-+..|.++....   ..
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-------e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~   75 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-------QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPE   75 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-------GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCB
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-------CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcC
Confidence            3467778888888866543211       11111111       1345665555556667777777887765543   22


Q ss_pred             ------CeEeEEe-ecccCCCeEEEEEcc---CCCEEEEEECCCeEEEEeCCCCc-------eEEEeeccccceeEEEEc
Q psy8448         182 ------GQCLRKL-EKAHSLGVTCIQFSR---DNSQILTASFDTYVRIHGLKSGK-------MLKEFRGHSSFVNDITFT  244 (482)
Q Consensus       182 ------~~~~~~~-~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~l~~~  244 (482)
                            |..+..+ .......|..+..-+   +..+++..+.+|.++-..+....       ....++. .+.+..+...
T Consensus        76 ~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~  154 (327)
T 3uc1_A           76 ASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLC  154 (327)
T ss_dssp             CCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEE
T ss_pred             CCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEe
Confidence                  2222111 112344566554433   47799999999999998765422       1223333 3445555555


Q ss_pred             CCCCEEEEEeCCCcEEEEECC--CCce-------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC----
Q psy8448         245 ADGHSVLSASSDGTVKMWNLK--TTEC-------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ----  311 (482)
Q Consensus       245 ~~~~~l~~~~~dg~i~i~d~~--~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~----  311 (482)
                      .....|+..+..|.+..+...  .-..       +..+. + .....|.++...+.+ ..++..+..|.++.-.+.    
T Consensus       155 ~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~-L-~~~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~  231 (327)
T 3uc1_A          155 SAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR-F-NIDDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEYPV  231 (327)
T ss_dssp             CTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC-C-CTTCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGSCB
T ss_pred             cCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec-C-CCCCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHccc
Confidence            556778889999998888776  3111       11111 1 234456666665554 678888999998887752    


Q ss_pred             ----CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         312 ----GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       312 ----~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                          ++-+..+..... ...+..+....+...++..+.+|.+.-+...
T Consensus       232 ~~R~~~G~~~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          232 QGRGGKGVLTVMYDRR-RGRLVGALIVDDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             CCTTSCCEESSCCCTT-TCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred             cCcCCCcEEEEEecCC-CCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence                122222221110 2345555444455677777888877745443

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=90.84  E-value=8.1  Score=34.05  Aligned_cols=238  Identities=13%  Similarity=0.107  Sum_probs=128.0

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC---C-----
Q psy8448         110 PDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA---T-----  181 (482)
Q Consensus       110 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~---~-----  181 (482)
                      |+..++++.+.+|.|+--.+..-+....    ....+.. .+.+..+........|+..+..|.+.-+...   .     
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~----~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a   77 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNG----QDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD   77 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTT----CCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCc----cccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCC
Confidence            5667888899999998765442111000    0001111 2455555555566678888888887766542   1     


Q ss_pred             -CeEeEEe-ecccCCCeEEEEEcc---CCCEEEEEECCCeEEEEeCCCC--------ceEEEeeccccceeEEEEcCCCC
Q psy8448         182 -GQCLRKL-EKAHSLGVTCIQFSR---DNSQILTASFDTYVRIHGLKSG--------KMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       182 -~~~~~~~-~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                       |..+..+ .......|..+..-+   ++.+++.++.+|.++...+...        .....+.. .+.+..+.......
T Consensus        78 ~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~  156 (323)
T 1wp5_A           78 LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMN  156 (323)
T ss_dssp             CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCS
T ss_pred             CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCC
Confidence             2221111 112334465543333   2568999999999999877422        11122332 24555555555566


Q ss_pred             EEEEEeCCCcEEEEECCCCce-------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--------Cc
Q psy8448         249 SVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--------GQ  313 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--------~~  313 (482)
                      .++..+.+|.+..+....-..       +..+. + .....|.++...+++...+++.+..|..+..++.        ++
T Consensus       157 ~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~-L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k  234 (323)
T 1wp5_A          157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMN-L-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR  234 (323)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCC-C-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred             EEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEE-e-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence            788899999988887643211       11111 1 2234566665544442268888888888777662        12


Q ss_pred             EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      -+..+.........+..+....++..++..+.+|.+.-..+.
T Consensus       235 Gv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~  276 (323)
T 1wp5_A          235 GVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             CEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             CEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence            222232111112245543333344566677777776644443

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=90.71  E-value=9.1  Score=34.45  Aligned_cols=237  Identities=14%  Similarity=0.118  Sum_probs=129.6

Q ss_pred             EcCCCCEEEEEeCCCeEEEEecCCCc-------eeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q psy8448         108 FSPDGQYLITGSVDGFIEVWNFTTGK-------IRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA  180 (482)
Q Consensus       108 ~s~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~  180 (482)
                      +-|+..++++.+.+|.|+--.+..-+       ....+...       ..+.+..+........|+..+..|.+.-+...
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-------e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~   75 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-------EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVH   75 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-------CCCCEEEEEEECTTCEEEEEETTSEEEEEEGG
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-------CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHH
Confidence            34677899999999999976543211       11111111       13456666666666778878888887766532


Q ss_pred             ---C------CeEeEEe-ecccCCCeEEEEEcc---CCCEEEEEECCCeEEEEeCCCCc-------eEEEeeccccceeE
Q psy8448         181 ---T------GQCLRKL-EKAHSLGVTCIQFSR---DNSQILTASFDTYVRIHGLKSGK-------MLKEFRGHSSFVND  240 (482)
Q Consensus       181 ---~------~~~~~~~-~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~  240 (482)
                         .      |..+..+ .......|.++..-.   ++.+|+.++..|.++...+....       ....+.. .+.+..
T Consensus        76 eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~  154 (370)
T 3l6v_A           76 QLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVG  154 (370)
T ss_dssp             GSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEE
T ss_pred             HCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEE
Confidence               1      2222111 112344566554432   45689999999999988764322       2222332 344545


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCce-------eeeeeccCCCccceeEEEEcCC----------------------
Q psy8448         241 ITFTADGHSVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASDIAVNSIHLLPK----------------------  291 (482)
Q Consensus       241 l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~----------------------  291 (482)
                      +........++..+.+|.+..++...-..       +.-+. + .....|.++...+.                      
T Consensus       155 v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~-L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g  232 (370)
T 3l6v_A          155 VALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIR-L-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDG  232 (370)
T ss_dssp             EEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCCEEEEEEECCC---------------------
T ss_pred             EEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEE-e-CCCCEEEEEEEecccccccccccccccccccccccc
Confidence            55545556788888899888887543111       11111 1 22344555544431                      


Q ss_pred             ------------CCCEEEEEeCCCeEEEEEcC--------CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448         292 ------------NTEHFVVCNKTNTVVIMNMQ--------GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV  351 (482)
Q Consensus       292 ------------~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~i  351 (482)
                                  ....+++.+..|..+...+.        ++-+..+.... ..+.+..+.+..+...++..+..|.+.-
T Consensus       233 ~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~-~~g~lv~~~~v~~~d~i~liT~~G~~iR  311 (370)
T 3l6v_A          233 AEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTE-RNGKLVRAVLLGSTDEVMLISDGGTLVR  311 (370)
T ss_dssp             --------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCT-TTCSEEEEEEECTTCEEEEEETTCCEEE
T ss_pred             ccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecC-CCCcEEEEEEeCCCceEEEEcCCCeEEE
Confidence                        22578888889988887762        12233332211 1345555444445556666677776663


Q ss_pred             Eeeh
Q psy8448         352 RLIQ  355 (482)
Q Consensus       352 w~~~  355 (482)
                      ....
T Consensus       312 ~~v~  315 (370)
T 3l6v_A          312 TRGS  315 (370)
T ss_dssp             EEGG
T ss_pred             eeHh
Confidence            3333

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=89.79  E-value=9.8  Score=33.35  Aligned_cols=236  Identities=11%  Similarity=0.104  Sum_probs=126.8

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCceeeccc-cccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEe---
Q psy8448         110 PDGQYLITGSVDGFIEVWNFTTGKIRKDLK-YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL---  185 (482)
Q Consensus       110 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---  185 (482)
                      ++..++++.+.+|.|+--.+..-+....-. ......+.. .+.+..+........++..+..|.++-+....-...   
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            466788899999999987665332111000 000000111 244555555556667888888998877765321100   


Q ss_pred             E-------EeecccCCCeEEEEEcc---CCCEEEEEECCCeEEEEeCCCC-------ceEEEeeccccceeEEEEcCCCC
Q psy8448         186 R-------KLEKAHSLGVTCIQFSR---DNSQILTASFDTYVRIHGLKSG-------KMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       186 ~-------~~~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      .       .+.......|..+...+   ++.+++..+.+|.++...+...       .....+.. .+.+..+....++.
T Consensus        85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence            0       01111234455554333   4678889999999998877432       22223333 45565555555566


Q ss_pred             EEEEEeCCCcEEEEECCCCce-------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--------Cc
Q psy8448         249 SVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--------GQ  313 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--------~~  313 (482)
                      .++..+.+|.+..+....-..       +..+. + .....|..+....++ ..+++.+..|..+..++.        ++
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~-L-~~~d~vv~~~~v~~~-~~l~~vt~~G~~kr~~~~e~~~~~R~~k  240 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMK-L-KEGDLFVKVLSVKEN-PYLLIVSENGYGKRLNMSKISELKRGAT  240 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCC-C-CTTCCEEEEEECTTC-SEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEE-e-CCCCEEEEEEEECCC-CeEEEEECCCceEEEEHHHhcccCCCCC
Confidence            788899999999988754111       11111 1 123455566555444 567888888988888772        12


Q ss_pred             EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      -+..+.........+..+..-.+...+...+..|.+.
T Consensus       241 Gv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~  277 (312)
T 1suu_A          241 GYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKAL  277 (312)
T ss_dssp             CEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEE
T ss_pred             CEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEE
Confidence            2222221111133444433333455666667777544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.12  E-value=11  Score=35.15  Aligned_cols=111  Identities=14%  Similarity=0.118  Sum_probs=62.8

Q ss_pred             cceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCc---eeeeeeccC------CCccceeEEEEcCC---CCCEEEEEeCC
Q psy8448         236 SFVNDITFTADGH-SVLSASSDGTVKMWNLKTTE---CTSTFKSLG------ASDIAVNSIHLLPK---NTEHFVVCNKT  302 (482)
Q Consensus       236 ~~i~~l~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~------~~~~~v~~i~~~~~---~~~~l~~~~~d  302 (482)
                      .....|+|.|++. .|+++...|.|++++.....   .+..+....      ........|+++|+   +..++++-+.+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3467999999986 56667788999999754321   111111100      11456789999996   22445443321


Q ss_pred             ------------CeEEEEEcCC-----------cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCc
Q psy8448         303 ------------NTVVIMNMQG-----------QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDM  347 (482)
Q Consensus       303 ------------~~i~i~d~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg  347 (482)
                                  ..|.-|.+..           +.+..+... .....-..++|.|||.+.++.++.+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~-~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL-HRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES-SSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC-CCcccCCcEeECCCCcEEEEeCCCC
Confidence                        1344455421           223333211 1123457899999998777766544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=88.72  E-value=12  Score=32.99  Aligned_cols=166  Identities=10%  Similarity=0.104  Sum_probs=97.8

Q ss_pred             CCCcEEEEEEcC---CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy8448          99 SKSHVECARFSP---DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK  175 (482)
Q Consensus        99 h~~~v~~~~~s~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~  175 (482)
                      ....|.++..-+   +..+++..+.+|.++--.+..-..... .......+.. .+.+..+........|+..+..|.+.
T Consensus        93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~  170 (327)
T 3uc1_A           93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSI  170 (327)
T ss_dssp             TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEE
T ss_pred             CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEE
Confidence            445666654433   578999999999999988764322111 0000011111 24555555555666788888999988


Q ss_pred             EEEcC--CCe-------EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCc-------eEEEe--eccccc
Q psy8448         176 IWKIA--TGQ-------CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK-------MLKEF--RGHSSF  237 (482)
Q Consensus       176 iwd~~--~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~--~~~~~~  237 (482)
                      .+...  .-.       -...+.......|.++...+++..++.++..|.++.-.+....       -+..+  ....+.
T Consensus       171 rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~  250 (327)
T 3uc1_A          171 RFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR  250 (327)
T ss_dssp             EEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred             EEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence            88766  211       1111212244567777766667789999999999888764322       12222  221334


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy8448         238 VNDITFTADGHSVLSASSDGTVKMWNLKT  266 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~dg~i~i~d~~~  266 (482)
                      +..+....+...++..+.+|.+..++...
T Consensus       251 lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          251 LVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             EEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            44444444455677778888888787643

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.35  E-value=12  Score=32.30  Aligned_cols=180  Identities=16%  Similarity=0.039  Sum_probs=95.2

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  230 (482)
                      ..|..++....  ..+.-. ||.|..|-......+.. .......|..++...+. .++. . ||.|+.|-....-.+..
T Consensus        24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~   96 (282)
T 3qhy_B           24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV   96 (282)
T ss_dssp             SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC
T ss_pred             CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC
Confidence            35777766543  223334 89999997544322211 11223457777765433 2333 5 89999997654221111


Q ss_pred             eeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT-TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                      -..-...|..++...+  ..+.-. +|.|..|-... ++.-...    .....|..++.-.   ...++-. +|.+..|-
T Consensus        97 P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~----~~~~~i~~i~~G~---~~~~~l~-~G~v~~wG  165 (282)
T 3qhy_B           97 PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA----EAQSGVTALDGGV---YTALAVK-NGGVIAWG  165 (282)
T ss_dssp             CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG----GGGSSEEEEEECS---SEEEEEE-TTEEEEEE
T ss_pred             CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc----cCCCCeEEEEccc---CEEEEEE-CCEEEEec
Confidence            1112345777776543  334445 89999997654 2221111    2234566666544   3333344 79999997


Q ss_pred             cC--CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         310 MQ--GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       310 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      ..  ++.-    ........|..++...+  +.++- .||.++.|=..
T Consensus       166 ~n~~gqlg----~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n  206 (282)
T 3qhy_B          166 DNYFGQTT----VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDN  206 (282)
T ss_dssp             CCTTSTTS----CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECC
T ss_pred             CCCCCCCC----CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECC
Confidence            73  3321    11111346777776544  33333 59999977443

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=87.87  E-value=12  Score=32.03  Aligned_cols=191  Identities=13%  Similarity=0.083  Sum_probs=111.4

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEE---cCCCeEeEEeecccCCCeEEEEEcc-CCCEEEEEECCCeEEEEeCCCCc
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWK---IATGQCLRKLEKAHSLGVTCIQFSR-DNSQILTASFDTYVRIHGLKSGK  226 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd---~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~  226 (482)
                      +.+..+.-.....+|+.-+.+|.++-..   +....... + ......|..+.... +..+++..+.+|.++-..+....
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~  101 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE  101 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence            4565555555556777777888776543   32222111 2 23455676665422 56789999999999998875432


Q ss_pred             ------eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce-------eeeeeccCCCccceeEEEEcCCCC
Q psy8448         227 ------MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASDIAVNSIHLLPKNT  293 (482)
Q Consensus       227 ------~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~  293 (482)
                            ....++ ..+.+..+........++..+..|.+..+....-..       +..+. + ..+..|..+...+++ 
T Consensus       102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~-L-~~~d~vv~~~~~~~~-  177 (276)
T 3no0_A          102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK-L-EKNDETSGLRIWNGE-  177 (276)
T ss_dssp             TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCCEEEEEEESSC-
T ss_pred             hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc-c-CCCCEEEEEEEeCCC-
Confidence                  112233 234555555555667888899999988887543111       11111 1 223455555555544 


Q ss_pred             CEEEEEeCCCeEEEEEcC--------CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEE
Q psy8448         294 EHFVVCNKTNTVVIMNMQ--------GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV  351 (482)
Q Consensus       294 ~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~i  351 (482)
                      ..++..+..|.++...+.        ++-+..+.    ....+..+....+...++..+.+|.+..
T Consensus       178 ~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~----~~~~lv~~~~~~~~~~i~~~t~~G~~ir  239 (276)
T 3no0_A          178 PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG----TKDTLVDLIPIKEEVELLITTKNGKAFY  239 (276)
T ss_dssp             SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC----SSSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred             CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc----CCCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence            678888899988887762        22233331    1344555544344456777788888774

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=87.29  E-value=14  Score=32.19  Aligned_cols=237  Identities=13%  Similarity=0.118  Sum_probs=124.2

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCceeeccc-cccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcC---C----
Q psy8448         110 PDGQYLITGSVDGFIEVWNFTTGKIRKDLK-YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIA---T----  181 (482)
Q Consensus       110 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~---~----  181 (482)
                      |+..++++.+.+|.|+--.+.+-+....-. ......+.. .+.+..+........|+..+..|.+.-+...   .    
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            456678888999999877665422211100 000000111 2445555555556677777888887666542   1    


Q ss_pred             --CeEeEEe-ecccCCCeEEEEEc---cCCCEEEEEECCCeEEEEeCCCC-------ceEEEeeccccceeEEEEcCCCC
Q psy8448         182 --GQCLRKL-EKAHSLGVTCIQFS---RDNSQILTASFDTYVRIHGLKSG-------KMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       182 --~~~~~~~-~~~~~~~v~~i~~~---~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                        |..+..+ .......|..+..-   .++.+++..+.+|.++-..+...       .....+... +.+..+....+..
T Consensus        80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~  158 (307)
T 1zi0_A           80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED  158 (307)
T ss_dssp             SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred             CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence              2221111 11234456655442   34567999999999999876421       111223333 4555555545556


Q ss_pred             EEEEEeCCCcEEEEECCCCce-------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC--------c
Q psy8448         249 SVLSASSDGTVKMWNLKTTEC-------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG--------Q  313 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~--------~  313 (482)
                      .++..+.+|.+..++...-..       +..+. + .....|.++...+++ ..+++.+..|..+-.++..        +
T Consensus       159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~-L-~~~d~Vv~~~~~~~~-~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k  235 (307)
T 1zi0_A          159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR-L-GEGDKVVSLIVPRGD-GAILTATQNGYGKRTAVAEYPTKSRATK  235 (307)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCCEEEEECCCSS-CEEEEEETTSEEEEECGGGSCCCCTTSC
T ss_pred             EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEE-e-CCCCEEEEEEEecCC-CEEEEEEcCCceEEEEHHHhccCCCCCC
Confidence            788888999988887643211       11111 1 233456666555444 5688888888888877621        1


Q ss_pred             EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       314 ~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      -...+... .....+..+....+...++..+.+|.+.-.
T Consensus       236 G~~~~~~~-~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~  273 (307)
T 1zi0_A          236 GVISIKVT-ERNGLVVGAVQVDDCDQIMMITDAGTLVRT  273 (307)
T ss_dssp             CEESSCCC-TTTCSEEEEEEECTTCEEEEEESSCCEEEE
T ss_pred             CEEeeEec-CCCCeEEEEEEeCCCceEEEEcCCCcEEEE
Confidence            12122111 113455554443444556677777776633

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=86.28  E-value=15  Score=31.45  Aligned_cols=165  Identities=13%  Similarity=0.112  Sum_probs=97.6

Q ss_pred             CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          98 GSKSHVECARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        98 ~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .....|..+.... +..+++..+.+|.++-..+..-. ... .......+.. .+.+..+........++..+..|.+..
T Consensus        65 ~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~-~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r  141 (276)
T 3no0_A           65 SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKA-QGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVAR  141 (276)
T ss_dssp             STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCS-TTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEE
T ss_pred             CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhc-CCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEE
Confidence            4466677765422 56789999999999999876532 110 0000011111 345666666666668888899999888


Q ss_pred             EEcCCC-------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCC-------ceEEEeeccccceeEEE
Q psy8448         177 WKIATG-------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSG-------KMLKEFRGHSSFVNDIT  242 (482)
Q Consensus       177 wd~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~l~  242 (482)
                      ++...-       .-...+.......|..+...+++..++..+..|.++...+...       +-+..+ ...+.+..+.
T Consensus       142 ~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~  220 (276)
T 3no0_A          142 FSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLI  220 (276)
T ss_dssp             EEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEE
T ss_pred             EEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEE
Confidence            875321       1111121223455666665566678999999999988876432       222233 2334454444


Q ss_pred             EcCCCCEEEEEeCCCcEEE--EECCC
Q psy8448         243 FTADGHSVLSASSDGTVKM--WNLKT  266 (482)
Q Consensus       243 ~~~~~~~l~~~~~dg~i~i--~d~~~  266 (482)
                      ...+...++..+.+|.+..  ++...
T Consensus       221 ~~~~~~~i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          221 PIKEEVELLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             EESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred             EeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence            3334456777788888877  77543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=82.66  E-value=24  Score=30.83  Aligned_cols=192  Identities=13%  Similarity=0.126  Sum_probs=110.3

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeE-------eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCC---CC----
Q psy8448         160 RDSEMLASGSQSGKVKIWKIATGQC-------LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK---SG----  225 (482)
Q Consensus       160 ~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~----  225 (482)
                      ++..++++.+.+|.|+-..+..-+.       ...+.......+..+........++..+..|.++-+...   ..    
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            4667889999999999887643321       111111233445555555566678888889987766543   21    


Q ss_pred             --ce---EEEeeccccceeEEEEcC---CCCEEEEEeCCCcEEEEECCCCce-----eeeeeccCCCccceeEEEEcCCC
Q psy8448         226 --KM---LKEFRGHSSFVNDITFTA---DGHSVLSASSDGTVKMWNLKTTEC-----TSTFKSLGASDIAVNSIHLLPKN  292 (482)
Q Consensus       226 --~~---~~~~~~~~~~i~~l~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~  292 (482)
                        .+   ...+. ....|.++...+   +..+++..+..|.++...+.....     ...+. +.. ...+..+.....+
T Consensus        86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~-L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIK-LND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBC-CCT-TCCEEEEEEECTT
T ss_pred             CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEe-cCC-CCEEEEEEEeCCC
Confidence              11   01122 233454444332   467788899999999887743211     11111 112 4455555554433


Q ss_pred             CCEEEEEeCCCeEEEEEcCC-----c---EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhh
Q psy8448         293 TEHFVVCNKTNTVVIMNMQG-----Q---IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       293 ~~~l~~~~~d~~i~i~d~~~-----~---~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                       ..++..+.+|.+..+....     +   -+..+.-.  ....+..+..-+++..|++.+..|......+.++
T Consensus       163 -~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~--~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~  232 (312)
T 1suu_A          163 -EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK--EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI  232 (312)
T ss_dssp             -CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC--TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred             -CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC--CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence             6788888899888887631     1   12222111  1445666666556778889999999886665543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.87  E-value=31  Score=35.77  Aligned_cols=38  Identities=21%  Similarity=0.416  Sum_probs=33.4

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL  188 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  188 (482)
                      ..+.+++..++..++++-+.|+++++|++.+++++...
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            35778888888889999999999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	482
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-31
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-28
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-26
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-17
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-16
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-15
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-13
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-11
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-12
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	1e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.003
d1jofa_	365	b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz	4e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (301), Expect = 3e-31
 Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 13/178 (7%)

Query: 97  FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK------------YQAQD 144
            G +  V   R + DG  + + S D  + VW   T + + +L+             ++  
Sbjct: 140 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 199

Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
           + +       +    +    L SGS+   +K+W ++TG CL  L   H   V  + F   
Sbjct: 200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSG 258

Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
              IL+ + D  +R+   K+ + +K    H  FV  + F      V++ S D TVK+W
Sbjct: 259 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (279), Expect = 3e-28
 Identities = 57/319 (17%), Positives = 114/319 (35%), Gaps = 63/319 (19%)

Query: 88  PTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK-------- 139
           P    K    G +S V    F P    +++ S D  I+VW++ TG   + LK        
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64

Query: 140 --------------------------YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK 173
                                     ++        +  V S++   + + + S S+   
Sbjct: 65  ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG 233
           +K+W++ TG C++     H   V  ++ ++D + I + S D  VR+  + + +   E R 
Sbjct: 125 IKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 234 HSSFVNDITFTAD--------------------GHSVLSASSDGTVKMWNLKTTECTSTF 273
           H   V  I++  +                    G  +LS S D T+KMW++ T  C  T 
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243

Query: 274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCT 332
                 D  V  +       +  + C    T+ + + +  + +++L++ +          
Sbjct: 244 V---GHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHE---HFVTSLD 296

Query: 333 TSPRGEWIYCVGEDMVLVV 351
                 ++     D  + V
Sbjct: 297 FHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.9 bits (177), Expect = 8e-15
 Identities = 58/349 (16%), Positives = 100/349 (28%), Gaps = 76/349 (21%)

Query: 175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGH 234
           K W I        L   H   VT + F    S +++AS D  +++   ++G   +  +GH
Sbjct: 1   KEW-IPRPPEKYAL-SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 58

Query: 235 SSFVNDITFTA------------------------------------------DGHSVLS 252
           +  V DI+F                                            +G  ++S
Sbjct: 59  TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG 312
           AS D T+KMW ++T  C  TF                 ++      C+   TV +  +  
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRM----VRPNQDGTLIASCSNDQTVRVWVVAT 174

Query: 313 QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQE 372
           +  ++     R   + +          I                +L   +  KT++    
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234

Query: 373 ETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGA 432
            TG+ L T+   D ++  +        + S                             A
Sbjct: 235 STGMCLMTLVGHDNWVRGVLFHSGGKFILS----------------------------CA 266

Query: 433 ARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRF 481
               LR  D            HE  V  L  H     + T S D  ++ 
Sbjct: 267 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.2 bits (170), Expect = 7e-14
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G  + V    F   G+++++ + D  + VW++   +  K L           E  V SL 
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--------EHFVTSLD 296

Query: 158 YSRDSEMLASGSQSGKVKIWK 178
           + + +  + +GS    VK+W+
Sbjct: 297 FHKTAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (268), Expect = 3e-26
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 18/182 (9%)

Query: 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160
                A    DG+Y+  GS+D  + VW+  TG + + L  + + +    +++V S+ ++R
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-SGTGHKDSVYSVVFTR 264

Query: 161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSL-----------GVTCIQFSRDNSQIL 209
           D + + SGS    VK+W +         +  +S             V  +  ++++  IL
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 324

Query: 210 TASFDTYVRIHGLKSGKMLKEFRGHSS------FVNDITFTADGHSVLSASSDGTVKMWN 263
           + S D  V     KSG  L   +GH +        N  +   + +   + S D   ++W 
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

Query: 264 LK 265
            K
Sbjct: 385 YK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.8 bits (226), Expect = 8e-21
 Identities = 52/285 (18%), Positives = 90/285 (31%), Gaps = 54/285 (18%)

Query: 81  DQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVD------------------- 121
           D    K P  L+      S  ++    FSPDG++L TG+ D                   
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 161

Query: 122 ---------------GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA 166
                            +      T +I      Q      + +          D + +A
Sbjct: 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221

Query: 167 SGSQSGKVKIWKIATGQCLRKLE------KAHSLGVTCIQFSRDNSQILTASFDTYVRIH 220
           +GS    V++W   TG  + +L+        H   V  + F+RD   +++ S D  V++ 
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

Query: 221 GLKSGK------------MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
            L++                  + GH  FV  +  T +   +LS S D  V  W+ K+  
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341

Query: 269 CTSTFK--SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ 311
                +        +AV +   L      F   +      I   +
Sbjct: 342 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.5 bits (207), Expect = 2e-18
 Identities = 52/282 (18%), Positives = 104/282 (36%), Gaps = 27/282 (9%)

Query: 94  QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM---- 149
                  S V C +FS DG+YL TG  +   +V+  + G +   L   +  N        
Sbjct: 56  HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 150 ------EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR 203
                 +  + S+ +S D + LA+G++   ++IW I   + +    + H   +  + +  
Sbjct: 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI-LQGHEQDIYSLDYFP 173

Query: 204 DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
              ++++ S D  VRI  L++G+                   DG  + + S D  V++W+
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233

Query: 264 LKTTECTSTFKS----LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRS-- 317
            +T        S          +V S+     + +  V  +   +V + N+Q    +S  
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 318 --------LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
                     +        L   T+   E+I    +D  ++ 
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 39/281 (13%), Positives = 79/281 (28%), Gaps = 28/281 (9%)

Query: 228 LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK------------- 274
           L +   H+S V  + F+ DG   L+   + T +++ +      +                
Sbjct: 55  LHKSLDHTSVVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113

Query: 275 --SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCT 332
             S  +SD+ + S+   P               +      +IV  L   +++        
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 333 TSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFI--AD 390
           +  +           +  +R  Q  L  S                     S+D  +   D
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233

Query: 391 INNGHWDTVLKSVQSLKLPEKKLI-----DLYEQVVL-----ELIELRELGAARSLLRQT 440
              G     L S        K  +         Q V+       ++L  L  A +     
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293

Query: 441 DPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRF 481
            P     +     H+  V+ +    +   + + S+D  + F
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (266), Expect = 3e-26
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 9/163 (5%)

Query: 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD 161
            V     +PD +  ++G+ D   ++W+   G  R+             E  + ++ +  +
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH--------ESDINAICFFPN 237

Query: 162 SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSL-GVTCIQFSRDNSQILTASFDTYVRIH 220
               A+GS     +++ +   Q L      + + G+T + FS+    +L    D    + 
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

Query: 221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
                       GH + V+ +  T DG +V + S D  +K+WN
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.3 bits (217), Expect = 9e-20
 Identities = 41/299 (13%), Positives = 92/299 (30%), Gaps = 58/299 (19%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G  + +    +  D + L++ S DG + +W+  T                L    VM+ A
Sbjct: 53  GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH--------AIPLRSSWVMTCA 104

Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA-------------------------- 191
           Y+     +A G       I+ + T +   ++ +                           
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 192 ------------------HSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG 233
                             H+  V  +  + D    ++ + D   ++  ++ G   + F G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 234 HSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT 293
           H S +N I F  +G++  + S D T ++++L+  +   T+         + S+     + 
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-GITSVSFSK-SG 282

Query: 294 EHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
              +         + +         L+          C   +  G  +     D  L +
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHD---NRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 5e-13
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160
             +    FS  G+ L+ G  D    VW+         L           +  V  L  + 
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--------DNRVSCLGVTD 322

Query: 161 DSEMLASGSQSGKVKIW 177
           D   +A+GS    +KIW
Sbjct: 323 DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 149 MEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQI 208
           + +A  + A +  S++  +    G++++      +  R L + H   +  + +  D+  +
Sbjct: 18  IRDARKACADATLSQITNNIDPVGRIQM------RTRRTL-RGHLAKIYAMHWGTDSRLL 70

Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
           ++AS D  + I    +   +      SS+V    +   G+ V     D    ++NLKT E
Sbjct: 71  VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130

Query: 269 CT 270
             
Sbjct: 131 GN 132

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 41/333 (12%), Positives = 86/333 (25%), Gaps = 50/333 (15%)

Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL 209
              + ++ +  DS +L S SQ GK+ IW   T   +  +    S  V    ++   + + 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVA 113

Query: 210 TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC 269
               D    I+ LK+ +         +                  +        L   E 
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173

Query: 270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDF 328
                +       V S+ L   +T  FV      +  + +++ G   ++ +  +    D 
Sbjct: 174 GQQTTTFTGHTGDVMSLSL-APDTRLFVSGACDASAKLWDVREGMCRQTFTGHE---SDI 229

Query: 329 LCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFI 388
                 P G       +D    +  ++        + T        G++  +       +
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRAD----QELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 389 ADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQ 448
                G+ D    +       +     +                                
Sbjct: 286 L---AGYDD---FNCNVWDALKADRAGVLAG----------------------------- 310

Query: 449 HEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRF 481
                H+  V  L        + T S D  L+ 
Sbjct: 311 -----HDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 226 KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
           +  +  RGH + +  + +  D   ++SAS DG + +W+  TT       
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP 94

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWN 128
           G  + V C   + DG  + TGS D F+++WN
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 1e-17
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 19/169 (11%)

Query: 105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM 164
                 DG ++++GS+D  I VW+  TG     L               ++        +
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS----------LTSGMELKDNI 229

Query: 165 LASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS 224
           L SG+    VKIW I TGQCL+ L+  +           + + ++T+S D  V++  LK+
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 289

Query: 225 GKMLKEFR-----GHSSFVNDITFTADGHSVLSASSDGT----VKMWNL 264
           G+ ++        G    V  I  +         S +GT    + + + 
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 4e-16
 Identities = 51/284 (17%), Positives = 100/284 (35%), Gaps = 43/284 (15%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK------------------ 139
           G   HV        G  +++GS D  ++VW+  TGK  + L                   
Sbjct: 14  GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72

Query: 140 ------------YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRK 187
                          +    L              + + SGS+   +++W I TGQCL  
Sbjct: 73  GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132

Query: 188 LEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG 247
           L    +          D  ++++ ++D  V++   ++   L   +GH++ V  + F  DG
Sbjct: 133 LMGHVA---AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG 187

Query: 248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI 307
             V+S S D ++++W+++T  C  T           + + L        V  N  +TV I
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTG---HQSLTSGMELKDN---ILVSGNADSTVKI 241

Query: 308 MNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
            +++         G  +              ++    +D  + +
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSA-VTCLQFNKNFVITSSDDGTVKL 284

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 3e-12
 Identities = 47/233 (20%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 78  AMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKD 137
             +D     +  +  + +               DG+ +++G+ D  ++VW+  T      
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172

Query: 138 LKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVT 197
           L+      +              D   + SGS    +++W + TG C+  L    SL  +
Sbjct: 173 LQGHTNRVYS----------LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL-TS 221

Query: 198 CIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTA-DGHSVLSASSD 256
            ++    ++ +++ + D+ V+I  +K+G+ L+  +G +   + +T    + + V+++S D
Sbjct: 222 GMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD 279

Query: 257 GTVKMWNLKTTECTSTFKSL--GASDIAVNSIHLLPKNTEHFVVCNKTNTVVI 307
           GTVK+W+LKT E      +L  G S   V  I           V ++  T   
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSS 236
           W+    +  + L K H   V         ++I++ S D  +++    +GK L+   GH+ 
Sbjct: 1   WRRGELKSPKVL-KGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 237 FVNDITFTADGH 248
            V       +  
Sbjct: 59  GVWSSQMRDNII 70

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 81  DQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDG----FIEVWNF 129
           D +  ++   L      GS   V   R S        GS +G     + V +F
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 81.8 bits (200), Expect = 1e-17
 Identities = 22/185 (11%), Positives = 49/185 (26%), Gaps = 11/185 (5%)

Query: 94  QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
                  SH     F  D + L   S        +        ++  +      L+  + 
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF-VIPLIPGSP 230

Query: 154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA------HSLGVTCIQFSRDNSQ 207
                   S    +G         + +         +         L  +        + 
Sbjct: 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290

Query: 208 ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267
              A     +  + +K+ K+        + + D+  +AD  +V+    DG +  + L+  
Sbjct: 291 YQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

Query: 268 ECTST 272
           E   T
Sbjct: 347 EDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 12/92 (13%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
            S              Y       G +  ++  T K+ +            ++  +  L 
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE------------VKNNLTDLR 321

Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLE 189
            S D + +      GK+  + +   +  R +E
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 25/275 (9%), Positives = 68/275 (24%), Gaps = 11/275 (4%)

Query: 87  YPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDG--FIEVWNFTTGKIRKDLKYQAQD 144
                +  +K      +   R   D +           F+ ++++ TGK  K  +     
Sbjct: 29  QDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNV 88

Query: 145 NFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
             M ++        + D   + +             + + +                   
Sbjct: 89  FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL 148

Query: 205 NSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
                       + ++ ++  K+       +S      F AD  ++   S        + 
Sbjct: 149 KHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 207

Query: 265 KTTEC----TSTFKSLGASDIAVNSIHLLPKNTE----HFVVCNKTNTVVIMNMQGQIVR 316
                     S    +     + N   L+P++       + + +       +N+     R
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 267

Query: 317 SLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
            +   +     +          +     E  VL+ 
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 302

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 22/161 (13%), Positives = 51/161 (31%), Gaps = 16/161 (9%)

Query: 106 ARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM 164
             FSP DG  +   S  G   + + +   + K          +     +  +    D+++
Sbjct: 8   EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----------VPEPLRIRYVRRGGDTKV 56

Query: 165 LASGSQSGK--VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL 222
                      + I+   TG+  +  E  +   V  +   R+    + A+    +    L
Sbjct: 57  AFIHGTREGDFLGIYDYRTGKAEKFEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTVDL 114

Query: 223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
           ++GK     R   + + D T + +   +         +   
Sbjct: 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 77.1 bits (188), Expect = 4e-16
 Identities = 29/212 (13%), Positives = 60/212 (28%), Gaps = 23/212 (10%)

Query: 97  FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSL 156
           F     V   R + DG   + G     I   +  TGK    L  +  +        V+  
Sbjct: 141 FPMPRQVYLMRAADDGSLYVAGP---DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 197

Query: 157 AYSR-----------------DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199
              +                 D +  A+           + TG+   +     +      
Sbjct: 198 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 257

Query: 200 QFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTV 259
             S  +   +    +  +  + LK  K++K           + F   G  +    +   +
Sbjct: 258 LRSPKDPNQIYGVLNR-LAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDL 315

Query: 260 KMWNLKTTECTSTFKSLGASDIAVNSIHLLPK 291
            ++N  T E     K L   D++  +  +  +
Sbjct: 316 AVFNPDTLEKVKNIK-LPGGDMSTTTPQVFIR 346

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 28/341 (8%), Positives = 80/341 (23%), Gaps = 51/341 (14%)

Query: 108 FSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLA 166
                +Y+I  +    + V +  +  + K      +           +   + D      
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG-------PGTAMMAPDNRTAYV 56

Query: 167 SGSQSGKVKIWKIATGQCLRKLEKA-----HSLGVTCIQFSRDNSQILTASFDT------ 215
             +  G +    + T +       +         +     S D  ++      T      
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

Query: 216 ------YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC 269
                  + +     G   K  R        +             +   +   ++KT + 
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGSLYVAGPDIYKMDVKTGKY 175

Query: 270 TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL 329
           T                +  P     +   +  +   ++    +              + 
Sbjct: 176 TVALP----LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231

Query: 330 C-----CTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVD-- 382
                  T     +    + E     +R  +   +   ++  L     +    +   +  
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD 291

Query: 383 --------SVDG---FIADINNGH--WDTV-LKSVQSLKLP 409
                      G   ++    N    ++   L+ V+++KLP
Sbjct: 292 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 15/206 (7%), Positives = 45/206 (21%), Gaps = 19/206 (9%)

Query: 156 LAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL-TASFD 214
            A     E +   +    + +  +A+    +        G      + DN       +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 215 TYVRIHGLKSGKMLKEFR------GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
             +    L + K                 +     + DG  V +  +       +     
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 269 C--------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSS 320
                             +      ++L+    +  +     +   +    G+   +L  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 321 GKREGGDFLCCTTSPRGEWIYCVGED 346
                       ++P   + +     
Sbjct: 182 RNWNRK----GYSAPDVLYFWPHQSP 203

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 64.8 bits (156), Expect = 5e-12
 Identities = 33/302 (10%), Positives = 81/302 (26%), Gaps = 53/302 (17%)

Query: 90  QLSKQIKFGSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML 148
            + K      K     A  +PD +   +  +  G I   +  T K               
Sbjct: 29  TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL--SSVPGE 86

Query: 149 MEEAVMSLAYSRDSEMLASGSQS------------GKVKIWKIATGQCLRKLEKAHSL-G 195
           +  ++ S A S D + + +                 +++++  A G   + +        
Sbjct: 87  VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ 146

Query: 196 VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSS------------------- 236
           V  ++ + D S  +       + +    +GK        +                    
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVK---TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSP 203

Query: 237 ------FVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLP 290
                       F  D     +A         +LKT +  +   +               
Sbjct: 204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS--- 260

Query: 291 KNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVL 349
              +   +    N +   +++  +++++ +        + C     +G+ +Y  G    L
Sbjct: 261 -PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHT----YYCVAFDKKGDKLYLGGTFNDL 315

Query: 350 VV 351
            V
Sbjct: 316 AV 317

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.2 bits (188), Expect = 5e-16
 Identities = 24/322 (7%), Positives = 82/322 (25%), Gaps = 25/322 (7%)

Query: 103 VECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
           + C  ++ D   +     +  + ++  +  K  +  + +  +        V  + ++ DS
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG------QVTGVDWAPDS 63

Query: 163 EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-----YV 217
             + +        +W +        L                N +       +       
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE--------- 268
                         +   S V  + +  +   + + S D   ++++    E         
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 269 ---CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREG 325
                   + +  S  +   +H +  +     V   ++   +         ++++   E 
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243

Query: 326 GDFLCCTTSPRGEWIYCVGEDMVLV--VRLIQQYLKESNLMKTLQCLQEETGVSLNTVDS 383
              L  T       +    +   ++         L     +   +   +    +     +
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 303

Query: 384 VDGFIADINNGHWDTVLKSVQS 405
           +D   +   +      L S+  
Sbjct: 304 LDKKASSEGSAAAGAGLDSLHK 325

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.9 bits (182), Expect = 3e-15
 Identities = 29/212 (13%), Positives = 63/212 (29%), Gaps = 5/212 (2%)

Query: 192 HSLG---VTCIQFSRDNSQILTASFDTYVRIHGLKSGKM--LKEFRGHSSFVNDITFTAD 246
           HS     ++C  +++D +QI     +  V I+     K   + E + H+  V  + +  D
Sbjct: 3   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 247 GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVV 306
            + +++  +D    +W LK      T   L  +  A        +        ++  ++ 
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

Query: 307 IMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKT 366
               +          K      L     P    +     D    +        E     T
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182

Query: 367 LQCLQEETGVSLNTVDSVDGFIADINNGHWDT 398
               +   G  +    S  G++  +      +
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGS 214

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.2 bits (175), Expect = 2e-14
 Identities = 26/203 (12%), Positives = 68/203 (33%), Gaps = 7/203 (3%)

Query: 148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNS 206
            + E +   A+++D   +A    + +V I++ +  + ++  E K H+  VT + ++ D++
Sbjct: 5   FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 207 QILTASFDTYVRI--HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
           +I+T   D    +     ++ K        +     + +  +       S    + +   
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 265 KTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVR----SLSS 320
           +        K +     +         N+      +      I +   + V         
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

Query: 321 GKREGGDFLCCTTSPRGEWIYCV 343
           G +     L   +S    W++ V
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGV 207

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 17/183 (9%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
            S   V    FS +G  +   S D  + + +          K  A          ++++ 
Sbjct: 199 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD--------KKMAVATLASETLPLLAVT 250

Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
           +  +S ++A+G       ++   +                        ++    + D   
Sbjct: 251 FITESSLVAAGH-DCFPVLFTYDSAAGKLSF-GGRLDVPKQSSQRGLTARERFQNLDKKA 308

Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHS----VLSASSDGTVKMWNLKTTECTSTF 273
              G  +         H + V+ I+  + G +      +   DG + +W++++ E  S  
Sbjct: 309 SSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE--SAL 365

Query: 274 KSL 276
           K L
Sbjct: 366 KDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 30/235 (12%), Positives = 67/235 (28%), Gaps = 58/235 (24%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIR---------------------- 135
                V    ++PD   ++T   D    VW       +                      
Sbjct: 49  EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 108

Query: 136 ------------------KDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW 177
                             ++  +  +     +   V+SL +  +S +LA+GS   K +I+
Sbjct: 109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

Query: 178 KIATGQCLRKLEKAHSL-----------------GVTCIQFSRDNSQILTASFDTYVRIH 220
                +   +                         V  + FS + S++   S D+ V + 
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228

Query: 221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS 275
                  +      +  +  +TF  +  S+++A  D    ++   +     +F  
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITES-SLVAAGHDCFPVLFTYDSAAGKLSFGG 282

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 88  PTQLSKQIKFGSKSHVECARFSPDGQY----LITGSVDGFIEVWNFTTGKIR-KDLK 139
                  +    K+ V        G+       T  +DG + +W+  + +   KDLK
Sbjct: 313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 20/198 (10%), Positives = 54/198 (27%), Gaps = 16/198 (8%)

Query: 101 SHVECARFSPDGQYLITGSVDGFIEVWN-------------FTTGKIRKDLKYQAQDNFM 147
             +    ++ DG  L     D  +                       + D+      +  
Sbjct: 135 RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHES 194

Query: 148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQ 207
               A       +D +     +    +    + TG+   +  +     V     + + ++
Sbjct: 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM--DVFYFSTAVNPAK 252

Query: 208 ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267
                    +    L+    +K           +  + DG +V    + G +  ++ +T 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311

Query: 268 ECTSTFKSLGASDIAVNS 285
           E        G + +++ S
Sbjct: 312 EKKGQVDLPGNASMSLAS 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.0 bits (141), Expect = 4e-10
 Identities = 31/325 (9%), Positives = 83/325 (25%), Gaps = 34/325 (10%)

Query: 113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQS 171
            Y++  +    + V +     + K +               M    +       A+ ++S
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGP------TPMVPMVAPGGRIAYATVNKS 55

Query: 172 GKVKIWKIATGQCLRKLE----KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM 227
             +    + TG+ L +++    +     +     S D   +        + +   +    
Sbjct: 56  ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115

Query: 228 -----------LKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN----LKTTECTST 272
                       ++       +  + +  DG  +     D  V        ++     S 
Sbjct: 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW 175

Query: 273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCT 332
                A    +   +    +             +           L +   E G+     
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235

Query: 333 TSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQE-ETGVSLNTVD-SVDG---F 387
                 + +    +           + ES  ++    ++      S  +V+ S DG   +
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW 295

Query: 388 IADINN--GHWDTV-LKSVQSLKLP 409
           +         +D   L+    + LP
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLP 320

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (177), Expect = 6e-15
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 24/168 (14%)

Query: 105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM 164
                 D +Y+++ S D  I+VWN +T +  + L    +                    +
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC----------LQYRDRL 190

Query: 165 LASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKS 224
           + SGS    +++W I  G CLR LE    L         DN +I++ ++D  +++  L +
Sbjct: 191 VVSGSSDNTIRLWDIECGACLRVLEGHEEL---VRCIRFDNKRIVSGAYDGKIKVWDLVA 247

Query: 225 G---------KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
                       L+    HS  V  + F  D   ++S+S D T+ +W+
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 1e-13
 Identities = 35/289 (12%), Positives = 91/289 (31%), Gaps = 45/289 (15%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK------------------ 139
            +   V C     D Q +++G  D  I++W+  T + ++ L                   
Sbjct: 13  ETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70

Query: 140 ------------YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRK 187
                          +    L+      L    ++ M+ + S+   + +W +A+   +  
Sbjct: 71  GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130

Query: 188 LEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG 247
                           D+  I++AS D  +++    + + ++   GH   +  + +    
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RD 188

Query: 248 HSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI 307
             V+S SSD T+++W+++   C    +           +  +  + +  V       + +
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLEG------HEELVRCIRFDNKRIVSGAYDGKIKV 242

Query: 308 MNMQGQIVRSLSSGKR-----EGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
            ++   +     +G                       I     D  +++
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 6e-08
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 183 QCLRKLE--KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND 240
             L+++      S GV C+Q+  D+ +I++   D  ++I    + +  +   GH+  V  
Sbjct: 3   HSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 241 ITF 243
           + +
Sbjct: 61  LQY 63

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 8e-15
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 12/163 (7%)

Query: 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD 161
              C   S DG  L TG +D  +  W+          +   Q         + SL Y   
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDL---------REGRQLQQHDFTSQIFSLGYCPT 235

Query: 162 SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG 221
            E LA G +S  V++  +      +     H   V  ++F+      ++   D  +    
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293

Query: 222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
              G  + +    SS V     + D   +++ S D    ++ +
Sbjct: 294 TPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 5e-11
 Identities = 43/265 (16%), Positives = 93/265 (35%), Gaps = 13/265 (4%)

Query: 88  PTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM 147
           P    +         V     S   +++ TG   G ++VW+ +    +  +   +Q + +
Sbjct: 39  PRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV---SQLDCL 94

Query: 148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL-EKAHSLGVTCIQFSRDNS 206
             +  + S     D   L  G ++  + IW +A      K    + +     +  S D+ 
Sbjct: 95  NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154

Query: 207 QILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKT 266
              +   D  + +  L +  ++++F+GH+   + I  + DG  + +   D TV+ W+L+ 
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214

Query: 267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGG 326
                           + S+   P      V    +N  V+   +    +          
Sbjct: 215 GRQLQQHDFTS----QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL----HLHES 266

Query: 327 DFLCCTTSPRGEWIYCVGEDMVLVV 351
             L    +  G+W    G+D +L  
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNA 291

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 23/261 (8%), Positives = 62/261 (23%), Gaps = 40/261 (15%)

Query: 81  DQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY 140
           D       + +S+       +++   +  PDG  LI G     + +W+      R   + 
Sbjct: 78  DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 141 QAQD----------------------------------NFMLMEEAVMSLAYSRDSEMLA 166
            +                                              +      ++   
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197

Query: 167 SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK 226
             +      +      +  +  +   +  +  + +      +      + V +  +    
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257

Query: 227 MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSI 286
              +   H S V  + F   G   +S   D  +  W           K       +V S 
Sbjct: 258 K-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS----SVLSC 312

Query: 287 HLLPKNTEHFVVCNKTNTVVI 307
            +   + ++ V  +      +
Sbjct: 313 DISV-DDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 92  SKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWN 128
           +   +    S V     S D +Y++TGS D    V+ 
Sbjct: 298 ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (176), Expect = 1e-14
 Identities = 17/144 (11%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA-------VM 154
             + A    + +     S+DG + V  F       +   +       +          V 
Sbjct: 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255

Query: 155 SLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD 214
           S+ +S   + L +    G +  W + T + ++   K +    + ++ +  ++ +  A+ D
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE--DSVVKIACSDNILCLATSD 313

Query: 215 TYVRIHGLKSGKMLKEFRGHSSFV 238
              + +      + +    ++S +
Sbjct: 314 DTFKTN----AAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 1e-13
 Identities = 36/278 (12%), Positives = 88/278 (31%), Gaps = 25/278 (8%)

Query: 94  QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
           QI+   K ++   +  P    L+  S DG + V+ F       DL    +      +  +
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-----YKHPL 59

Query: 154 MSLAYSRDSE-MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS 212
           +   +  +++  +  G+  G++    +      + L    +    C      + +++ AS
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119

Query: 213 FDTYVRIHGLKSGKMLKEFRGHSSFV------NDITFTADGHSVLSASSDGTVKMWNLKT 266
           +D  + +   ++         + +           T   +   ++   ++  V+ + L  
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179

Query: 267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI-------------MNMQGQ 313
            E  +           +  + LLPK  E +   +    V +                  +
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239

Query: 314 IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
             R                 SPR +++Y  G D ++  
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 1e-13
 Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 19/176 (10%)

Query: 102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD 161
             +      +   LI G  +  ++ +     +          +   L  +        ++
Sbjct: 150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE----DDNGTIEESGLKYQIRDVALLPKE 205

Query: 162 SEMLASGSQSGKVKIWKIATGQCLRKLEK--------------AHSLGVTCIQFSRDNSQ 207
            E  A  S  G+V +             K                +  V  I+FS  +  
Sbjct: 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF 265

Query: 208 ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWN 263
           + TA  D  +    L++ K +K F   +   + +      + +  A+SD T K   
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 5e-11
 Identities = 8/88 (9%), Positives = 29/88 (32%)

Query: 226 KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNS 285
           ++++  +    +++DI        +L  S DG++ ++                    +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 286 IHLLPKNTEHFVVCNKTNTVVIMNMQGQ 313
            + +        V      ++ +++ G 
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGS 89

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 9/82 (10%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
                V    FSP  ++L T   DG I  WN  T K  K+                  + 
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---------KFNEDSVVK 299

Query: 158 YSRDSEMLASGSQSGKVKIWKI 179
            +    +L   +     K    
Sbjct: 300 IACSDNILCLATSDDTFKTNAA 321

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 5e-14
 Identities = 37/343 (10%), Positives = 104/343 (30%), Gaps = 65/343 (18%)

Query: 109 SPDGQYLITGSVDGFIEVWNFTTGK----IRKDLKYQAQDNFMLMEEAVMSLA-YSRDSE 163
           S    + ++ S DG+++VW+           K   +    + +   + + ++   + +  
Sbjct: 21  SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80

Query: 164 MLASGSQSGKVKIWKIATGQCLRKL---------EKAHSLGVTCIQFSRDNSQ-----IL 209
           ++A+ S SG +  ++I      +K+                   +++   N +     ++
Sbjct: 81  LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 140

Query: 210 TASFDTYVRIHGLKSGKM------------------LKEFRGHSSFVNDITFTADGHSVL 251
                    I                          ++     S F   +  +  G  + 
Sbjct: 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-IA 199

Query: 252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC------------ 299
           +  ++GTV++  L T      F+S  +     NSI  +  + +  ++             
Sbjct: 200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 259

Query: 300 ----NKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ 355
                    +  +++     ++           +  + +  GE +   G D    +R   
Sbjct: 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG--KLRFWD 317

Query: 356 QYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDT 398
                   +KT + +        + ++  +  +A   +G    
Sbjct: 318 --------VKTKERITTLNMHC-DDIEIEEDILAVDEHGDSLA 351

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 2e-13
 Identities = 31/219 (14%), Positives = 70/219 (31%), Gaps = 25/219 (11%)

Query: 84  EEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQ 143
                 Q + +              S  G  + TG  +G +++   +T +   +  +++Q
Sbjct: 168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN--FESQ 224

Query: 144 DNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE-------------- 189
            + +    ++ S+ +S    +LA    S       +   +   ++               
Sbjct: 225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 284

Query: 190 -KAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND----ITFT 244
             AHS  V  + F+     + +A +D  +R   +K+ + +     H   +      +   
Sbjct: 285 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 344

Query: 245 ADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
             G S+      G   +  LK    +     L  S   V
Sbjct: 345 EHGDSLAEP---GVFDVKFLKKGWRSGMGADLNESLCCV 380

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 6e-11
 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 37/213 (17%)

Query: 98  GSKSHVECARFSPDG-----QYLITGSVDGFIEVWNF-TTGKIRKDLKYQAQDNFMLMEE 151
             K      ++           L+   V G   +W F         L         L   
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 152 A---------VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSL-----GVT 197
                       S+  S    ++A+G  +G V+I +++T + L   E  HS+      + 
Sbjct: 177 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 198 CIQFSRDNSQILTASFDTYVRIH----------------GLKSGKMLKEFRGHSSFVNDI 241
            ++FS   S +  A                            S +       HSS+V  +
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295

Query: 242 TFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
           +F   G ++ SA  DG ++ W++KT E  +T  
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 7e-10
 Identities = 24/197 (12%), Positives = 52/197 (26%), Gaps = 35/197 (17%)

Query: 175 KIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGK------ML 228
           K++ IAT        KAH   +  +     NS  ++ S D Y+++   K           
Sbjct: 1   KVF-IATANAG----KAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKS 53

Query: 229 KEFRGHSSFVNDITF-------TADGHSVLSASSDGTVKMWNLKTTECTSTFK------- 274
                H S ++ +           +   V + S  G +  + +   + T           
Sbjct: 54  YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113

Query: 275 SLGASDIAVNSIHLLP----KNTEHFVVCNKTNTVVIMNMQG----QIVRSLSSGKREGG 326
                  +  ++          +   V  +   T  I             +L+       
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173

Query: 327 DFLCCTTSPRGEWIYCV 343
                +     ++   V
Sbjct: 174 QGTVESPMTPSQFATSV 190

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 9e-10
 Identities = 35/309 (11%), Positives = 89/309 (28%), Gaps = 45/309 (14%)

Query: 105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD--NFMLMEEAVMSLAYSRDS 162
             R + +   + T S  G +  +  T     K + ++  D  +  + + +  +L +   +
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 163 E-----MLASGSQSGKVKIWKIATGQCLRKLEKAHSLG-----------------VTCIQ 200
           +      L +    G   IWK             +                     T + 
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191

Query: 201 FSRDNSQILTASFDTYVRI------HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS 254
            S     I T   +  V+I        L + +       +S+ +  + F+  G  +  A 
Sbjct: 192 ISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250

Query: 255 SDGTV---KMWNLKTTECTSTFKSLGASDIAVNSIHLLPK---------NTEHFVVCNKT 302
              +     ++  +  E   +      S  A                  + E        
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310

Query: 303 NTVVIMNMQ-GQIVRSLSSGKRE-GGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKE 360
             +   +++  + + +L+    +   +         G+ +   G   V  ++   +    
Sbjct: 311 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 370

Query: 361 SNLMKTLQC 369
           ++L ++L C
Sbjct: 371 ADLNESLCC 379

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 13/125 (10%)

Query: 231 FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK--------SLGASDIA 282
            + H + +  ++        +S S DG +K+W+ K  +  +             G   + 
Sbjct: 10  GKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 283 -VNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIY 341
            + +I             + +  ++   +  +          E  D L         W  
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITRE--DETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 342 CVGED 346
             G  
Sbjct: 126 KWGAS 130

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 6e-13
 Identities = 27/167 (16%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL 209
             +V++     +   + +G+    ++++     + L +L   H  GV  ++++     ++
Sbjct: 12  MTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILV 68

Query: 210 TASFDTYVRIHGLKSGKMLKEFRGH--SSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267
           + S D  VR+  +K G     F GH  +    DI    +   +++ S D T+ +W L   
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

Query: 268 ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI 314
                        +  ++    P             +V  ++  G I
Sbjct: 129 SSVPDHGEEHDYPLVFHTPEENPYFVGVL--RGHMASVRTVSGHGNI 173

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 3e-10
 Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 9/137 (6%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
           G  + V       +  Y+ITG+ D  I V++    K    L           +  V +L 
Sbjct: 10  GHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH--------DGGVWALK 60

Query: 158 YSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
           Y+    +++  +                       ++    I   ++   I+T S D  +
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120

Query: 218 RIHGLKSGKMLKEFRGH 234
            +  L     + +    
Sbjct: 121 HVWKLPKESSVPDHGEE 137

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 8/81 (9%), Positives = 24/81 (29%), Gaps = 2/81 (2%)

Query: 140 YQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCI 199
             ++              +     +L SGS+  +  I+ + +G+ +       +  +  +
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSV 330

Query: 200 QFSRDNSQILTASFDTYVRIH 220
            F      +     D    + 
Sbjct: 331 NFKGKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 4e-09
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 195 GVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK-EFRGHSSFVNDITFTADGHSVLSA 253
            ++ I     +  IL +  +    I+ L+SGK++       +  +  + F      V + 
Sbjct: 283 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAV 341

Query: 254 SSDGTVKMWNL 264
             DG   +  L
Sbjct: 342 EKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 3e-08
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 190 KAHSLGV-TCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH 248
           + H   V TC+QF  +++ ++T + D  +R++   + K L +  GH   V  + +   G 
Sbjct: 9   RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66

Query: 249 SVLSASSDGTVKMWNLKTTEC 269
            ++S S+D TV++W++K   C
Sbjct: 67  -LVSGSTDRTVRVWDIKKGCC 86

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 17/220 (7%)

Query: 88  PTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM 147
           P +    +             S  G  +++GS D  + VW+    K    L       + 
Sbjct: 147 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS 206

Query: 148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQ 207
            +        Y  + +   S S    ++IW +  G+ +  L+         +      S 
Sbjct: 207 TI--------YDHERKRCISASMDTTIRIWDLENGELMYTLQGHT-----ALVGLLRLSD 253

Query: 208 ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267
               S      I G  +    ++F  H + ++ IT      ++L + S+    ++NL++ 
Sbjct: 254 KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSG 313

Query: 268 ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVI 307
           +       +      + S++   K         K     +
Sbjct: 314 KLVHAN--ILKDADQIWSVNFKGKTL--VAAVEKDGQSFL 349

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.1 bits (162), Expect = 9e-13
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 18/168 (10%)

Query: 96  KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIR----KDLKYQAQDNFMLMEE 151
               +  +    +S     L+  +  G I   + ++G  +     +   +A+        
Sbjct: 190 HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 249

Query: 152 AVMSLAYSRDSEML----------ASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF 201
               +AY R  + +             + S  V +    TG+ L K E      +  I  
Sbjct: 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHEIDSINV 307

Query: 202 SRDNSQIL--TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG 247
           S+D   +L   ++ D  + IH  +SG+ L+           IT    G
Sbjct: 308 SQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 26/276 (9%), Positives = 68/276 (24%), Gaps = 42/276 (15%)

Query: 108 FSPDGQYLI-----TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS 162
            +PD + +        +      V +   G++            M+    + +   + D 
Sbjct: 9   PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG----------MIDGGFLPNPVVADDG 58

Query: 163 EMLA----------SGSQSGKVKIWKIATGQCLRKLEK------AHSLGVTCIQFSRDNS 206
             +A           G ++  V+++   T      +E                  + D  
Sbjct: 59  SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 118

Query: 207 QILTASF--DTYVRIHGLKSGKMLKEFRGHSSF-------VNDITFTADGHSVLSASS-D 256
            +L   F     V +  L+     +       +               DG     A   +
Sbjct: 119 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE 178

Query: 257 GTVKMWNLKTTECTSTFK-SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIV 315
           GT ++ + +       F  +  A       +       +   +   +     +     + 
Sbjct: 179 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238

Query: 316 RSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
            +  +     G +         + IY + +      
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 274

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 12/113 (10%)

Query: 94  QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV 153
           Q     ++                 +   F+ V +  TG+     +         M   +
Sbjct: 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---------MGHEI 302

Query: 154 MSLAYSRDSE--MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
            S+  S+D +  + A  +    + I    +G+ LR +      G   I  +  
Sbjct: 303 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV-NQLGHGPQVITTADM 354

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (159), Expect = 2e-12
 Identities = 37/275 (13%), Positives = 79/275 (28%), Gaps = 54/275 (19%)

Query: 89  TQLSKQIKFGSKSHVECARFSP--DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNF 146
                Q      S V   +FSP    QYL +G   G + VW +T  K    ++   +  F
Sbjct: 52  VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF 111

Query: 147 MLMEEAVMSLAYSRDSEMLA--SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRD 204
            ++   +  +++  +   L      +          +G  L ++         C      
Sbjct: 112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171

Query: 205 NSQILTASFDTYVRIHGLKSGK---MLKEFRGHSSFVNDITFT----------------- 244
             + +T   D  V  +     K     +      SFV D+ F+                 
Sbjct: 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 231

Query: 245 -----------------------------ADGHSVLSASSDGTVKMWNLKTTECTSTFKS 275
                                         D     +  +D T+++W++ T++C   +  
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT- 290

Query: 276 LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM 310
           L    +    + ++       +  +   T+    +
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.5 bits (147), Expect = 6e-11
 Identities = 30/312 (9%), Positives = 80/312 (25%), Gaps = 64/312 (20%)

Query: 99  SKSHVECARFSPDGQYLITGSVDG-FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLA 157
            ++      + P    +        F+   +    K+   +++    +       V ++ 
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS-----SVVTTVK 70

Query: 158 YS--RDSEMLASGSQSGKVKIWKIATGQCLRKL-------EKAHSLGVTCIQFSRDNSQI 208
           +S  + S+ L SG +SGKV +W     +    +        +  +  ++ I +  +  ++
Sbjct: 71  FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130

Query: 209 LTASFDTYVRIHGLKSGKMLKE-------------------------------------- 230
                        +                                              
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 231 ----------FRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASD 280
                          SFV D+ F+ D    +               +     +       
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 250

Query: 281 IAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEW 339
           +      L   +++ F       T+ + ++   + V+  +  K++ G+      +     
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 310

Query: 340 IYCVGEDMVLVV 351
           I  +  D  L  
Sbjct: 311 IISLSLDGTLNF 322

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.6 bits (156), Expect = 6e-12
 Identities = 18/233 (7%), Positives = 52/233 (22%), Gaps = 25/233 (10%)

Query: 106 ARFSPDGQYLI----------TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMS 155
           A     G               G    ++EV++  T     D++      F +     + 
Sbjct: 70  AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHI- 128

Query: 156 LAYSRD-SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVT------CIQFSRDNSQI 208
           +      + +L     S       +      +  + A    +           S   S  
Sbjct: 129 IGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLA 188

Query: 209 LTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTE 268
            +                  +     +           G  V + +S             
Sbjct: 189 ASDLAAAPAAAG----IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGAT 244

Query: 269 CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSG 321
             +       ++    + +      +       T+ ++I+ ++       ++ 
Sbjct: 245 MKAAID---GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE 294

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.1 bits (134), Expect = 3e-09
 Identities = 20/207 (9%), Positives = 49/207 (23%), Gaps = 29/207 (14%)

Query: 101 SHVECARFSPDGQ-YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS 159
               C    P        GS    +   +                       +  +   +
Sbjct: 163 KSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA--AGIVGAQCTGAQNCSSQAAQAN 220

Query: 160 RDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT---- 215
               ++ + + S        A       ++  +  G     F     Q++    +T    
Sbjct: 221 YPGMLVWAVASSILQGDIPAAGATMKAAID-GNESGRKADNFRSAGFQMVAKLKNTDGIM 279

Query: 216 ---------------YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS--DGT 258
                                   G+       +    + I    DG S   A+S     
Sbjct: 280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEV 338

Query: 259 VKMWNLKTTECTSTFKSLGA--SDIAV 283
           + +++  + +  S+ + L      ++V
Sbjct: 339 LDIYDAASDQDQSSVE-LDKGPESLSV 364

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.8 bits (157), Expect = 7e-12
 Identities = 35/272 (12%), Positives = 76/272 (27%), Gaps = 28/272 (10%)

Query: 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
              +   +G++ +   +T +    L+  +   V   + S     +     D  V +  L 
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLW 91

Query: 224 SGKM-----LKEFRGHSSFVNDITFTADGHSVL-SASSDGTVKMWNLKTTECTSTFKSLG 277
             +      +K      S         +    +  A       + + +T E      + G
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151

Query: 278 AS--------DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ---------GQIVRSLSS 320
            +        +  V +I       E  V   +T  +++++               R L  
Sbjct: 152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD 211

Query: 321 GKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNT 380
           G  +G      T +     +  +      +V +     +  +  +    +    G    T
Sbjct: 212 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 271

Query: 381 VDSVDGFIADIN---NGHWDTVLKSVQSLKLP 409
               D  +A I     GH D   K + S    
Sbjct: 272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPAL 303

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 30/228 (13%), Positives = 71/228 (31%), Gaps = 26/228 (11%)

Query: 108 FSPDGQ--YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML 165
              D +  + +T    G I + + +T +I+  L             AV     S     L
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLD---------TGYAVHISRLSASGRYL 76

Query: 166 ASGSQSGKVKIWKIATGQCLRKLE----KAHSLGVTCIQFSRDNSQIL-TASFDTYVRIH 220
               + GKV +  +   +     E           T      ++   +  A +     I 
Sbjct: 77  FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 221 GLKSGKMLKEFRGHSSFVNDITFTADGHSV-LSASSDGTVKMWNLKTTEC-----TSTFK 274
             ++ +  K         ++  +  +     + AS      + N+K T        +   
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196

Query: 275 SLGASDIAV----NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSL 318
           +L  ++I+     +   L   +       N  N +V+++ +   + ++
Sbjct: 197 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 244

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.1 bits (137), Expect = 2e-09
 Identities = 23/187 (12%), Positives = 53/187 (28%), Gaps = 18/187 (9%)

Query: 90  QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLM 149
           ++   +  G    V  +R S  G+YL     DG + + +    +     + +        
Sbjct: 53  EIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---A 107

Query: 150 EEAVMSLAYSRDSEML-ASGSQSGKVKIWKIATGQCLR----------KLEKAHSLGVTC 198
                S     + +   A      +  I    T +  +          + E      V  
Sbjct: 108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 167

Query: 199 IQFSRDNSQILTASFDT-YVRIHGLKSGKMLKEFRGHS-SFVNDITFTADGHSVLSASSD 256
           I  S    + +    +T  + +        LK     +  F++D          ++A++ 
Sbjct: 168 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA 227

Query: 257 GTVKMWN 263
               +  
Sbjct: 228 RNKLVVI 234

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 5/157 (3%)

Query: 199 IQFSRDNSQIL--TASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD 256
                D   +   T      + +    + ++        + V+    +A G  +     D
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRD 82

Query: 257 GTVKMWNLKTTECT--STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI 314
           G V M +L   E T  +  K    +     S     ++             VIM+ +   
Sbjct: 83  GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 142

Query: 315 VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVV 351
            + + S +    D       PR   I         +V
Sbjct: 143 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.4 bits (152), Expect = 1e-11
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 1/115 (0%)

Query: 105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEM 164
             R++PDG    +   DG I ++N   G              +    +V  L +S D   
Sbjct: 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV-FEDDSLKNVAHSGSVFGLTWSPDGTK 252

Query: 165 LASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI 219
           +AS S    +KIW +AT +  + +     +    +        +++ S + ++  
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (140), Expect = 4e-10
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR 160
             V    +SPDG  + + S D  I++WN  T K+ K +    +            L    
Sbjct: 239 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-------EDQQLGIIW 291

Query: 161 DSEMLASGSQSGKVKIW 177
             + L S S +G +   
Sbjct: 292 TKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.6 bits (137), Expect = 8e-10
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 198 CIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDIT-FTADGHSVLSASSD 256
            + +S D ++I +AS D  ++I  + + K+ K     +   +          +++S S++
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302

Query: 257 GTVKMWNL 264
           G +   N 
Sbjct: 303 GFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 196 VTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS 255
              +  +    +I   +  + V    + S    + +  HS        +  G+   S   
Sbjct: 20  AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 256 DGTVKMWNLKTTEC 269
            G V++W+   T  
Sbjct: 79  HGNVRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 38/258 (14%), Positives = 73/258 (28%), Gaps = 48/258 (18%)

Query: 98  GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA--------------- 142
                   A+ SP G Y  +G V G + +W+ T                           
Sbjct: 56  EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 115

Query: 143 -----------------------QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI 179
                                    N      A+ S+ +                     
Sbjct: 116 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 175

Query: 180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE-------FR 232
                 +     H+  V  ++++ D S   +   D  + ++    G              
Sbjct: 176 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 235

Query: 233 GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN 292
            HS  V  +T++ DG  + SAS+D T+K+WN+ T +   T      + I    + ++   
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP--VGTRIEDQQLGIIWTK 293

Query: 293 TEHFVVCNKTNTVVIMNM 310
            +  V  +    +  +N 
Sbjct: 294 -QALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (130), Expect = 7e-09
 Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 4/93 (4%)

Query: 153 VMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS 212
            + L  +   + +   +    V    + +          HS   T  + S       +  
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSGYYCASGD 77

Query: 213 FDTYVRIHGLKSG--KMLKEFRGHSSFVNDITF 243
               VRI         +       S  V DI++
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 35/307 (11%), Positives = 68/307 (22%), Gaps = 21/307 (6%)

Query: 99  SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY 158
           ++        +P G  +   +    +      +    +                      
Sbjct: 16  ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEH--------SHQTTVAKT 66

Query: 159 SRDSEMLASGSQSGKVKIWKIATG-QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYV 217
           S      ASG   G V+IW        L+      S  V  I +  ++ +I         
Sbjct: 67  SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 126

Query: 218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG 277
             H                     +            S        +          + G
Sbjct: 127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG 186

Query: 278 ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK----REGGDFLCCTT 333
                V+S+   P  +           V+   + G                 G     T 
Sbjct: 187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 246

Query: 334 SPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINN 393
           SP G  I     D    +++    +    + KT+          L  + +    ++   N
Sbjct: 247 SPDGTKIASASADK--TIKIWN--VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302

Query: 394 GH---WD 397
           G     +
Sbjct: 303 GFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 90  QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWN 128
           ++ K I  G++   +        Q L++ S +GFI   N
Sbjct: 271 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.3 bits (149), Expect = 3e-11
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 225 GKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
           G + +   GH+  +  ++ +ADG ++ SA ++G +  W++ T      F 
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.9 bits (148), Expect = 4e-11
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 2/122 (1%)

Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQIL 209
            +A+ +L+ S D + L S    G +  W I+TG   R     H+  +T I+ +       
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 210 TASFDT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267
            +  D    V   G             SS    +  +ADG   ++A         + K T
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 268 EC 269
           E 
Sbjct: 132 EV 133

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.5 bits (139), Expect = 4e-10
 Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 3/131 (2%)

Query: 182 GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-GHSSFVND 240
           G   +     H+  +T +  S D   + +A  + ++    + +G   + F   H++ +  
Sbjct: 2   GSIDQVRY-GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 241 ITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN 300
           I  T     + + S D  +K+     +   S+             + +          C 
Sbjct: 61  IKTT-SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119

Query: 301 KTNTVVIMNMQ 311
           K   +      
Sbjct: 120 KHIAIYSHGKL 130

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (125), Expect = 2e-08
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 93  KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLK 139
            Q+++G    +     S DG+ L +   +G I  W+ +TG   +   
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 8e-07
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 7/167 (4%)

Query: 100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS 159
             +  C   S D Q++  G  D  + V+  +   + +            +  +       
Sbjct: 136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV 195

Query: 160 RDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI 219
              +      +                     H+  V C+ +S DN ++ T S D  V +
Sbjct: 196 ATDQS-----RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250

Query: 220 HGLKSGK--MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNL 264
             +       +     H+    +     +  +++SA  D  +K WN+
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 7/45 (15%), Positives = 14/45 (31%)

Query: 86  KYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFT 130
             P+     IK         +    +   +++   D  I+ WN  
Sbjct: 254 NKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 60.7 bits (146), Expect = 1e-10
 Identities = 21/199 (10%), Positives = 64/199 (32%), Gaps = 15/199 (7%)

Query: 156 LAYSRDSE--MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF 213
                D       +   +G++ +    + + ++ ++      V   + S     +L    
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID--TGYAVHISRMSASGRYLLVIGR 81

Query: 214 DTYVRIHGLKSGKM-----LKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTT 267
           D  + +  L + +      +K      S  +      +    ++ +       + + +T 
Sbjct: 82  DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141

Query: 268 ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGD 327
           E      + G +   V++    P+     ++ +  +   I+N++      +     +  D
Sbjct: 142 EPKQIVSTRGMT---VDTQTYHPEPRVAAIIASHEHPEFIVNVKET--GKVLLVNYKDID 196

Query: 328 FLCCTTSPRGEWIYCVGED 346
            L  T+     ++   G D
Sbjct: 197 NLTVTSIGAAPFLADGGWD 215

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 59.6 bits (143), Expect = 4e-10
 Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 17/168 (10%)

Query: 108 FSPDGQ--YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEML 165
              D    + +T    G I + +  + KI K +             AV     S     L
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID---------TGYAVHISRMSASGRYL 76

Query: 166 ASGSQSGKVKIWKIATGQCLRKLE----KAHSLGVTCIQFSRD-NSQILTASFDTYVRIH 220
               +  ++ +  +   +  +  E           +      +    I  A +     I 
Sbjct: 77  LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136

Query: 221 GLKSGKMLKEFRGHSSFVNDITFTADGH-SVLSASSDGTVKMWNLKTT 267
             ++ +  +        V+  T+  +   + + AS +    + N+K T
Sbjct: 137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 184

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.2 bits (129), Expect = 2e-08
 Identities = 18/168 (10%), Positives = 46/168 (27%), Gaps = 4/168 (2%)

Query: 96  KFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMS 155
              +   V  +R S  G+YL+    D  I++ +    +  K  + +             S
Sbjct: 57  VIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE---ARSVESS 113

Query: 156 LAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS-QILTASFD 214
                +     +G+                +++     + V    +  +     + AS +
Sbjct: 114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 173

Query: 215 TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMW 262
               I  +K    +            +T       +     D + + +
Sbjct: 174 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF 221

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 4e-10
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 195 GVTCIQFSRDNSQILTASFDTYVRIHGLKS-GKMLKEFRGHSSFVNDITFTADGHSVLSA 253
                +   +   + T S DT + I+ +K   K++K    H   VN++ +      ++S+
Sbjct: 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS 275

Query: 254 SSDGTVKMWN 263
            +D  +K WN
Sbjct: 276 GADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.7 bits (137), Expect = 8e-10
 Identities = 21/144 (14%), Positives = 55/144 (38%), Gaps = 4/144 (2%)

Query: 79  MKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKI---R 135
              Q  +    ++S  +K   ++       SP   Y+  G V G I +++  + ++   R
Sbjct: 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR 200

Query: 136 KDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLG 195
              +    +          +     + +++A+GS    + I+ +     + K   AH  G
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260

Query: 196 VTCIQFSRDNSQILTASFDTYVRI 219
           V  + +   +  ++++  D  ++ 
Sbjct: 261 VNNLLWETPS-TLVSSGADACIKR 283

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (115), Expect = 4e-07
 Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 12/119 (10%)

Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV 283
             ++LK   GH+  +  +T     + ++S S DG +  W+  +     +          +
Sbjct: 2   HDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSN--------LI 49

Query: 284 NSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYC 342
            S+          +  + T  V  +       +   +     G     T       +  
Sbjct: 50  VSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 108

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 4e-06
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 10/80 (12%)

Query: 101 SHVECARFSPDGQYLITGSVDGFIEVWNF-TTGKIRKDLKYQAQDNFMLMEEAVMSLAYS 159
           +         +   + TGS+D  I +++     KI K L           ++ V +L + 
Sbjct: 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--------KDGVNNLLWE 267

Query: 160 RDSEMLASGSQSGKVKIWKI 179
             S  L S      +K W +
Sbjct: 268 TPS-TLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 9e-06
 Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 181 TGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVND 240
             + L+ +   H+ G+T +  +     +++ S+D  +      S       + HS+ +  
Sbjct: 2   HDEVLKTI-SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVS 51

Query: 241 ITFTADGH 248
           +  +    
Sbjct: 52  LDNSKAQE 59

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 150 EEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDN 205
            + + +L  +     L SGS  G++  W  ++          HS  +  +  S+  
Sbjct: 13  NKGITALTVNP----LISGSYDGRIMEWSSSSMHQ------DHSNLIVSLDNSKAQ 58

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVL-SASSDGTVKMWNLKTTECTSTFK 274
               + K+             I  T DG  V  + S   TV + +  T   T+T  
Sbjct: 229 IDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 116 ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQSGKV 174
           I  S    I V + T+ K+   +          +    M    S D +++  + + S  V
Sbjct: 6   IANSESDNISVIDVTSNKVTATIP---------VGSNPMGAVISPDGTKVYVANAHSNDV 56

Query: 175 KIWKIATGQC 184
            I   AT   
Sbjct: 57  SIIDTATNNV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 101 SHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLK 139
                   +PDG+ + +  S    + V +  T  I   + 
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 1/38 (2%)

Query: 153 VMSLAYSRD-SEMLASGSQSGKVKIWKIATGQCLRKLE 189
              +A + D  ++  + S    V +   AT      + 
Sbjct: 246 PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 37/279 (13%), Positives = 85/279 (30%), Gaps = 45/279 (16%)

Query: 90  QLSKQIKFGSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML 148
           +++  I  GS  +   A  SPDG  + +  +    + + +  T  +   +   +    + 
Sbjct: 23  KVTATIPVGS--NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80

Query: 149 MEEAVMSLAYSRDSEMLAS----------GSQSGKVKIWKIATGQCLRKLEK-------- 190
           +      +  +  +    S          G+         +A     +KL          
Sbjct: 81  VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140

Query: 191 --------------AHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSS 236
                         +       I  + D +++  A+FD+            + +     +
Sbjct: 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200

Query: 237 FVNDITFTADGHSVLSASS---DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT 293
             + I    +G      +      TV M +  T + T+              I + P   
Sbjct: 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----VGPDPAGIAVTPDGK 256

Query: 294 EHFVVCNKTNTVVIMNMQ-GQIVRSLSSGK--REGGDFL 329
           + +V  +  NTV +++     I  +++ GK     G F+
Sbjct: 257 KVYVALSFCNTVSVIDTATNTITATMAVGKNPYASGQFI 295

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 3/109 (2%)

Query: 167 SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSG 225
           + S+S  + +  + + +    +             S D +++  A +    V I    + 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 226 KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK 274
            ++      SS              ++  +  T+ + +  +     T K
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK 113

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 30/247 (12%), Positives = 76/247 (30%), Gaps = 39/247 (15%)

Query: 164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLK 223
              SG   G+V++  + + + L +      + V    F+ D++     + ++   + G +
Sbjct: 13  GFWSGGHQGEVRVLGVPSMRELMR------IPV----FNVDSATGWGITNESKEILGGDQ 62

Query: 224 SGKMLKEFRGHSSFVNDITFTADGHSVLSASS-DGTVKMWNLKTTECTSTFKSLGASDIA 282
                     H S  +      DG  +      +  V    L   +            I 
Sbjct: 63  QYLNGDCHHPHISMTD---GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAI- 118

Query: 283 VNSIHLLPKNTEHFVVCNKTNTVVIMNM--------QGQIVRSLSSGKRE-------GGD 327
            + + L      ++V CN    +   N            +  ++ +   +        G+
Sbjct: 119 -HGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGN 177

Query: 328 FLCCTTSPRGEWIY--CVGEDMVLVV----RLIQQYLKESNLMKTLQCLQEETGVSL--N 379
                    G++    C   +  + +    R  + ++   N+ +    ++     ++  +
Sbjct: 178 LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS 237

Query: 380 TVDSVDG 386
            V  VDG
Sbjct: 238 KVPVVDG 244

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 31/234 (13%), Positives = 58/234 (24%), Gaps = 32/234 (13%)

Query: 57  WQQHQGLLPP-GTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYL 115
             +     P  GT   L          + E     ++ Q+       ++       G+Y 
Sbjct: 135 NAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD--VAWQVIVDGN--LDNTDADYTGKYA 190

Query: 116 ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVK 175
            +   +    V    T   R D  +    N   +  AV      +       G  S    
Sbjct: 191 TSTCYNSERAVDLAGTM--RNDRDWVVVFNVERIAAAV------KAGNFKTIGD-SKVPV 241

Query: 176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGH 234
           +      +  R +    +     +  S D    +        V +  +   K+   F   
Sbjct: 242 VDGRGESEFTRYIPVPKN--PHGLNTSPDGKYFIANGKLSPTVSVIAID--KLDDLFEDK 297

Query: 235 ----SSFV---------NDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS 275
                + V            TF   G++  +   D  V  WN+           
Sbjct: 298 IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDR 351

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 20/236 (8%), Positives = 61/236 (25%), Gaps = 17/236 (7%)

Query: 88  PTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFM 147
             +  +  ++   + +    F P   YL +  +    ++W        +     + D   
Sbjct: 132 LEKNVQNYEYQENTGIHGMVFDPTETYLYSADL-TANKLWTHRKLASGEVELVGSVDAPD 190

Query: 148 LMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQ 207
             +       +   + + A      ++  + I        +   HS  +        + +
Sbjct: 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT-HMPVYTHHSFPLIPPGIPDRDPE 249

Query: 208 ILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT 267
                +          SGK +          +          +          +      
Sbjct: 250 TGKGLYRAD-VCALTFSGKYMF-------ASSRANKFELQGYIAGFKLRDCGSIEKQLFL 301

Query: 268 ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN-KTNTVVIMNMQGQIVRSLSSGK 322
             T T      S    N++   P + E   + + +   + I   + + +  ++  +
Sbjct: 302 SPTPT------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVR 351

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 1/85 (1%)

Query: 228 LKEFRGHSSFVNDITFTADGHSVLSASS-DGTVKMWNLKTTECTSTFKSLGASDIAVNSI 286
           L +       V  +  + D   +      +  V  + +   +   TF +  A   ++  I
Sbjct: 29  LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHI 88

Query: 287 HLLPKNTEHFVVCNKTNTVVIMNMQ 311
               +    FV       V +  ++
Sbjct: 89  STDHQGQFVFVGSYNAGNVSVTRLE 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	482
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.74
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.47
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.46
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.41
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.38
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.36
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.25
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.24
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.24
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.22
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.2
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.19
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.16
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.12
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.08
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.93
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.73
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.72
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.7
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.6
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.33
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.32
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.31
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.17
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.16
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.96
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.89
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.79
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.61
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.55
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.54
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.5
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.3
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.29
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.28
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.22
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.1
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.07
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.0
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.65
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.37
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.11
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.7
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.11
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.95
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.88
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.82
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.77
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.04
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	90.92
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.56
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.55
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.89
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	87.33
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	84.91

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-45  Score=332.48  Aligned_cols=284  Identities=17%  Similarity=0.252  Sum_probs=245.1

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .+|...|+|++|+|+|++||+|+ ||.|+|||+.++.....+.   .....+|.+.|.+++|+|++++|++++.||.|++
T Consensus        48 ~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~---~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS---QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE---EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeE---EeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            38999999999999999999997 8999999998765443322   1233457889999999999999999999999999


Q ss_pred             EEcCCCe--EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe
Q psy8448         177 WKIATGQ--CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS  254 (482)
Q Consensus       177 wd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  254 (482)
                      ||+....  ....+ ..|...+.+++|+|++.++++++.|+.|++||+++++.......|...|.+++|++++..+++++
T Consensus       124 wd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~  202 (337)
T d1gxra_         124 WDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             EECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9987543  44445 57888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEc
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTS  334 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  334 (482)
                      .|+.+++||+++++.+..+    .+...|.+++|+|++ .++++++.|+.+++||++.........+   ...|.+++|+
T Consensus       203 ~d~~v~i~d~~~~~~~~~~----~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~i~~v~~s  274 (337)
T d1gxra_         203 LDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLHLH---ESCVLSLKFA  274 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEE----ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEEEECCC---SSCEEEEEEC
T ss_pred             ccccccccccccceeeccc----ccccceEEEEEcccc-cccceecccccccccccccccccccccc---ccccceEEEC
Confidence            9999999999999888776    567889999999998 8999999999999999964444444433   7789999999


Q ss_pred             CCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhh
Q psy8448         335 PRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLI  414 (482)
Q Consensus       335 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  414 (482)
                      |+|++|++++.||.|+                  +|+..++                               +.      
T Consensus       275 ~~g~~l~s~s~Dg~i~------------------iwd~~~~-------------------------------~~------  299 (337)
T d1gxra_         275 YCGKWFVSTGKDNLLN------------------AWRTPYG-------------------------------AS------  299 (337)
T ss_dssp             TTSSEEEEEETTSEEE------------------EEETTTC-------------------------------CE------
T ss_pred             CCCCEEEEEeCCCeEE------------------EEECCCC-------------------------------CE------
Confidence            9999999999999999                  5555555                               11      


Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         415 DLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                             .           ....|.+.|++++|+|++++||||+.||+|+||
T Consensus       300 -----------------------~-----------~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vW  333 (337)
T d1gxra_         300 -----------------------I-----------FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             -----------------------E-----------EEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             -----------------------E-----------EEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence                                   1           223578889999999999999999999999999

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-43  Score=320.53  Aligned_cols=287  Identities=23%  Similarity=0.399  Sum_probs=258.6

Q ss_pred             eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      +..+.||+++|++++|+|++++||+|+.||+|+|||+.+++....+.        +|...|.+++|+|++.++++++.++
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--------~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--------GHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe--------CCCCcEEEEeeeccccccccccccc
Confidence            34566999999999999999999999999999999999988766554        3578999999999999999999999


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      .+.+|+....+....+ ..|...+.++.|+|++..+++++.|+.+++||+++++.+..+.+|...+.+++|+|++++|++
T Consensus        82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS  160 (317)
T ss_dssp             CCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccc-ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEE
Confidence            9999999888877766 688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC-------------------CCEEEEEeCCCeEEEEEc-CC
Q psy8448         253 ASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN-------------------TEHFVVCNKTNTVVIMNM-QG  312 (482)
Q Consensus       253 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-------------------~~~l~~~~~d~~i~i~d~-~~  312 (482)
                      ++.|+.|++|++.+++....+.   .+...+.++.++|++                   ..++++++.|+.|++|+. ++
T Consensus       161 ~~~d~~v~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  237 (317)
T d1vyhc1         161 CSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  237 (317)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EeCCCeEEEEeeccceeeEEEe---cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence            9999999999999999888877   778889999998864                   247899999999999999 67


Q ss_pred             cEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccC
Q psy8448         313 QIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADIN  392 (482)
Q Consensus       313 ~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (482)
                      +.+..+..+   ...|.+++|+|++++|++|+.||.|+                  +|+..++                 
T Consensus       238 ~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~dg~i~------------------iwd~~~~-----------------  279 (317)
T d1vyhc1         238 MCLMTLVGH---DNWVRGVLFHSGGKFILSCADDKTLR------------------VWDYKNK-----------------  279 (317)
T ss_dssp             EEEEEEECC---SSCEEEEEECSSSSCEEEEETTTEEE------------------EECCTTS-----------------
T ss_pred             cEEEEEeCC---CCCEEEEEECCCCCEEEEEECCCeEE------------------EEECCCC-----------------
Confidence            777887765   77899999999999999999999999                  5565555                 


Q ss_pred             CCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEE
Q psy8448         393 NGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGT  472 (482)
Q Consensus       393 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  472 (482)
                                    ++                             ..          .+.+|.+.|++++|+|++++|||
T Consensus       280 --------------~~-----------------------------~~----------~~~~h~~~V~~~~~s~~~~~l~s  306 (317)
T d1vyhc1         280 --------------RC-----------------------------MK----------TLNAHEHFVTSLDFHKTAPYVVT  306 (317)
T ss_dssp             --------------CC-----------------------------CE----------EEECCSSCEEEEEECSSSSCEEE
T ss_pred             --------------cE-----------------------------EE----------EEcCCCCCEEEEEEcCCCCEEEE
Confidence                          33                             33          77789999999999999999999


Q ss_pred             EecCceeecC
Q psy8448         473 YSEDGLLRFS  482 (482)
Q Consensus       473 ~~~Dg~i~iW  482 (482)
                      |+.||+|+||
T Consensus       307 ~s~Dg~i~iW  316 (317)
T d1vyhc1         307 GSVDQTVKVW  316 (317)
T ss_dssp             EETTSEEEEE
T ss_pred             EeCCCeEEEe
Confidence            9999999999

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-42  Score=322.47  Aligned_cols=295  Identities=21%  Similarity=0.297  Sum_probs=239.3

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccc----------cccccccccEEEEEEcCCCCEEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQ----------DNFMLMEEAVMSLAYSRDSEMLA  166 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----------~~~~~h~~~i~~l~~~~~~~~l~  166 (482)
                      .+|++.|+|++|+|||++||+|+ |+.|+|||+.+++....+.....          .....|...|++++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            37999999999999999999987 89999999999987766543321          12345778899999999999999


Q ss_pred             EEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCC
Q psy8448         167 SGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD  246 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~  246 (482)
                      +|+.||.|++||...++....+ .+|...|.++++++++..+++++.++.+++||.++.........+...+....+.++
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  216 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  216 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             eccccccccccccccccccccc-ccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCC
Confidence            9999999999999999988888 689999999999999999999999999999999998888777765555544444558


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeec----cCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEec--
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECTSTFKS----LGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLS--  319 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~--  319 (482)
                      +++|++++.|+.|++||.+++.....+..    ...|...|.+++|+|++ .++++++.|+.|++||+. +.......  
T Consensus       217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC------------
T ss_pred             CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC-CEEEEEECCCcEEEEeccCCccccccccc
Confidence            89999999999999999999887766542    22577899999999998 899999999999999984 22211111  


Q ss_pred             -------CCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccC
Q psy8448         320 -------SGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADIN  392 (482)
Q Consensus       320 -------~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (482)
                             ....+...|.+++|+|++++|++|+.||.|+                  +|+..++                 
T Consensus       296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~------------------vwd~~~~-----------------  340 (388)
T d1erja_         296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL------------------FWDKKSG-----------------  340 (388)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE------------------EEETTTC-----------------
T ss_pred             cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEE------------------EEECCCC-----------------
Confidence                   1112367899999999999999999999999                  6666666                 


Q ss_pred             CCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeec------cccCC
Q psy8448         393 NGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGL------THHPH  466 (482)
Q Consensus       393 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~------~~sp~  466 (482)
                                    ++                             ..          .+.+|.+.|+++      +|+|+
T Consensus       341 --------------~~-----------------------------~~----------~l~~H~~~V~~~~~~~~~~~spd  367 (388)
T d1erja_         341 --------------NP-----------------------------LL----------MLQGHRNSVISVAVANGSSLGPE  367 (388)
T ss_dssp             --------------CE-----------------------------EE----------EEECCSSCEEEEEECSSCTTCTT
T ss_pred             --------------cE-----------------------------EE----------EEeCCCCCEEEEEEecCcccCCC
Confidence                          22                             22          566777777766      47889


Q ss_pred             cceEEEEecCceeecC
Q psy8448         467 QNLLGTYSEDGLLRFS  482 (482)
Q Consensus       467 ~~~l~s~~~Dg~i~iW  482 (482)
                      +++||||+.||+|+||
T Consensus       368 ~~~l~s~s~Dg~I~iW  383 (388)
T d1erja_         368 YNVFATGSGDCKARIW  383 (388)
T ss_dssp             CEEEEEEETTSEEEEE
T ss_pred             CCEEEEEeCCCEEEEE
Confidence            9999999999999999

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-40  Score=300.44  Aligned_cols=242  Identities=17%  Similarity=0.205  Sum_probs=209.7

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      ..+++.+.+++++|+|+.|+.++ ++.|.+||+.+.+....+        .+|...|++++|+|++++|++|+.||.|++
T Consensus        14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~--------~~H~~~v~~~~~sp~g~~latg~~dg~i~i   84 (311)
T d1nr0a1          14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY--------TEHSHQTTVAKTSPSGYYCASGDVHGNVRI   84 (311)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE--------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEE--------cCCCCCEEEEEEeCCCCeEeccccCceEee
Confidence            35666778899999999999986 567999999987665544        346889999999999999999999999999


Q ss_pred             EEcCCCeEe--EEeecccCCCeEEEEEccCCCEEEEEECC--CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE-EE
Q psy8448         177 WKIATGQCL--RKLEKAHSLGVTCIQFSRDNSQILTASFD--TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS-VL  251 (482)
Q Consensus       177 wd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~  251 (482)
                      ||+.+++..  ..+ ..|..+|.+++|+|++++|++++.+  ..+++|++++++....+.+|...|.+++|+|++++ |+
T Consensus        85 wd~~~~~~~~~~~~-~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~  163 (311)
T d1nr0a1          85 WDTTQTTHILKTTI-PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII  163 (311)
T ss_dssp             EESSSTTCCEEEEE-ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             eeeecccccccccc-ccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeec
Confidence            999887654  334 6789999999999999999999864  56999999999999999999999999999999885 78


Q ss_pred             EEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCC----cccCc
Q psy8448         252 SASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSG----KREGG  326 (482)
Q Consensus       252 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~----~~~~~  326 (482)
                      +|+.|+.|++||+++++....+.   .|..+|.++.|+|++ .++++++.|+.|++||. .+.....+...    ..|..
T Consensus       164 sgs~d~~i~i~d~~~~~~~~~~~---~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~  239 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPPFKFKSTFG---EHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG  239 (311)
T ss_dssp             EEETTSCEEEEETTTBEEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred             ccccccccccccccccccccccc---cccccccccccCccc-cccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999998888776   788999999999998 89999999999999999 56666666532    23567


Q ss_pred             CEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         327 DFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       327 ~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      .|.+++|+|++++|++|+.||.|+||
T Consensus       240 ~V~~~~~s~~~~~l~tgs~Dg~v~iw  265 (311)
T d1nr0a1         240 SVFGLTWSPDGTKIASASADKTIKIW  265 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEE
Confidence            89999999999999999999999943

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-39  Score=298.14  Aligned_cols=287  Identities=20%  Similarity=0.323  Sum_probs=244.8

Q ss_pred             eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      +..+.||++.|++++|+|++++||+|+.||+|+|||+.+++....+..        |..+|.+++|+|+++++++++.|+
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--------RSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC--------SCSCEEEEEECTTSSEEEEEETTC
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec--------ccccEEeeEeeccceeeeeecccc
Confidence            345679999999999999999999999999999999999887765543        578999999999999999999999


Q ss_pred             cEEEEEcCCCe----EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         173 KVKIWKIATGQ----CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       173 ~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      .+.+|+.....    ....+ ..|.......... .+..+.....+.....++............+...+....+.+.+.
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEE-CCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             eeecccccccccccccceec-ccccccccccccc-cccccccccccccccccccccccccccccccceeEeeeccccccc
Confidence            99999976543    23334 4566555555544 456788888899999999988888888888888999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcC
Q psy8448         249 SVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGD  327 (482)
Q Consensus       249 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~  327 (482)
                      ++++++.|+.|++||+++++++..+.   .|...|.+++|+|++ .++++++.|+.|++|++. ...+..+. ...+...
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~~~~~~~---~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~~~~~~-~~~~~~~  272 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYS-HDNIICG  272 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEC---CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSC
T ss_pred             eeEEeecCceEEEEECCCCcEEEEEe---CCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeecccccccccc-cccccCc
Confidence            99999999999999999999888887   889999999999998 899999999999999995 44444443 3334678


Q ss_pred             EEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccC
Q psy8448         328 FLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLK  407 (482)
Q Consensus       328 v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (482)
                      +.+++|+|++++|++|+.||.|+                  +|+..++                               +
T Consensus       273 i~~~~~s~~~~~l~~g~~dg~i~------------------iwd~~~~-------------------------------~  303 (340)
T d1tbga_         273 ITSVSFSKSGRLLLAGYDDFNCN------------------VWDALKA-------------------------------D  303 (340)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEE------------------EEETTTC-------------------------------C
T ss_pred             eEEEEECCCCCEEEEEECCCEEE------------------EEECCCC-------------------------------c
Confidence            99999999999999999999999                  5565555                               2


Q ss_pred             CCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         408 LPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       408 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      +                             ..          .+.+|.++|++++|+|++++|||||.||+|+||
T Consensus       304 ~-----------------------------~~----------~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         304 R-----------------------------AG----------VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             E-----------------------------EE----------EECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             E-----------------------------EE----------EEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            2                             33          677899999999999999999999999999999

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.6e-40  Score=303.70  Aligned_cols=246  Identities=11%  Similarity=0.124  Sum_probs=203.2

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWK  178 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd  178 (482)
                      +.++|+|++|+|+|++||+|+.||.|+|||+++++....      ..+.+|.++|++++|+|++++|++|+.|+.|++||
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~------~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV------HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE------EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEE------EEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence            357899999999999999999999999999987654322      23456889999999999999999999999999999


Q ss_pred             cCCCeEeEEe-ecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceE----EEeeccccceeEEEEcCCCCEEEEE
Q psy8448         179 IATGQCLRKL-EKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKML----KEFRGHSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       179 ~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~l~~~~~~~~l~~~  253 (482)
                      +.++.....+ ...|...|.+++|+|+++.|++++.|+.|++|+++.....    .....|...|.+++|+|++++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence            9877654433 2467889999999999999999999999999998766532    3345688999999999999999999


Q ss_pred             eCCCcEEEEECCCCceee---------------eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448         254 SSDGTVKMWNLKTTECTS---------------TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS  317 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~~~~---------------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  317 (482)
                      +.|+.|++||........               .+.....|...|.+++|+|++ ..+++++.|+.|++||+ .++.+..
T Consensus       160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~  238 (371)
T d1k8kc_         160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVAT  238 (371)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeeecccceee
Confidence            999999999986532110               111223677889999999998 89999999999999999 6778877


Q ss_pred             ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         318 LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +..+   ..+|.+++|+|++++|++| .|+.+++|.+.
T Consensus       239 ~~~~---~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~  272 (371)
T d1k8kc_         239 LASE---TLPLLAVTFITESSLVAAG-HDCFPVLFTYD  272 (371)
T ss_dssp             EECS---SCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             eecc---cccceeeeecCCCCEEEEE-cCCceEEEEee
Confidence            7765   6789999999999877765 47777776543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.7e-39  Score=290.19  Aligned_cols=276  Identities=18%  Similarity=0.260  Sum_probs=228.2

Q ss_pred             CCCCceeeccCC-ccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          64 LPPGTTIDLFRG-KAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        64 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      .|+|..+++..+ .+.+|+.....     ...++.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++......   
T Consensus        26 ~~~g~~l~~~~~~~v~i~~~~~~~-----~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~---   97 (311)
T d1nr0a1          26 TPAGDKIQYCNGTSVYTVPVGSLT-----DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT---   97 (311)
T ss_dssp             CTTSSEEEEEETTEEEEEETTCSS-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE---
T ss_pred             cCCCCEEEEEeCCEEEEEECCCCc-----eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccc---
Confidence            356666555433 35566654332     223345999999999999999999999999999999998876443222   


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCE-EEEEECCCeEEE
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQ--SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQ-ILTASFDTYVRI  219 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~i  219 (482)
                         +..|..+|.+++|+|++++|++++.  +..+++|++++++....+ ..|...|.+++|+|++++ |++|+.|+.|++
T Consensus        98 ---~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1          98 ---IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             ---EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             ---cccccCccccccccccccccccccccccccccccccccccccccc-cccccccccccccccceeeeccccccccccc
Confidence               3346789999999999999999985  456999999999888887 689999999999999875 788999999999


Q ss_pred             EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeecc----CCCccceeEEEEcCCCCCE
Q psy8448         220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSL----GASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~~  295 (482)
                      ||+++++....+..|..+|+++.|+|++++|++++.|+.|++||+++++....+...    .+|...|.+++|+|++ .+
T Consensus       174 ~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~  252 (311)
T d1nr0a1         174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TK  252 (311)
T ss_dssp             EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SE
T ss_pred             ccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC-CE
Confidence            999999999999999999999999999999999999999999999998877766432    2578899999999998 89


Q ss_pred             EEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         296 FVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       296 l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      |++|+.||.|++||+ +++.+..+..+......+.++.|+  ++.|++++.||.|++|+.
T Consensus       253 l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNP  310 (311)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEETTCCEEEEET
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec--CCEEEEEECCCEEEEEeC
Confidence            999999999999999 688888887665444455566654  567999999999998775

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=290.08  Aligned_cols=274  Identities=19%  Similarity=0.307  Sum_probs=234.5

Q ss_pred             CCCCceeecc-CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          64 LPPGTTIDLF-RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        64 ~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      .|+|..++.. ++.+.+|+................+|.+.|++++|+|++++|++|+.||.|++||+........     
T Consensus        60 s~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~-----  134 (337)
T d1gxra_          60 SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK-----  134 (337)
T ss_dssp             CSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE-----
T ss_pred             CCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccc-----
Confidence            3555544442 5668899887665555555555668999999999999999999999999999999876543221     


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeC
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL  222 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~  222 (482)
                       ..+..|...+.+++|+|++.++++++.|+.|++|++.+++..... ..|...+.+++|++++..+++++.|+.|++||+
T Consensus       135 -~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~  212 (337)
T d1gxra_         135 -AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL  212 (337)
T ss_dssp             -EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence             123346788999999999999999999999999999999888777 688999999999999999999999999999999


Q ss_pred             CCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC
Q psy8448         223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT  302 (482)
Q Consensus       223 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d  302 (482)
                      ++++.+..+. |...|.+++|+|++++|++++.|+.+++||+++++.....    .|...|.+++|+|++ .+|++++.|
T Consensus       213 ~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~i~~v~~s~~g-~~l~s~s~D  286 (337)
T d1gxra_         213 REGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----LHESCVLSLKFAYCG-KWFVSTGKD  286 (337)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC----CCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             ccceeecccc-cccceEEEEEcccccccceecccccccccccccccccccc----ccccccceEEECCCC-CEEEEEeCC
Confidence            9999887765 7889999999999999999999999999999988765543    788899999999998 899999999


Q ss_pred             CeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         303 NTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       303 ~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      +.|++||. .++.+..+.    +...|.+++|+|++++|++|+.||.|+||++
T Consensus       287 g~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         287 NLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCCCEEEEcc----CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999 577766654    2678999999999999999999999998875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.8e-39  Score=288.23  Aligned_cols=246  Identities=14%  Similarity=0.196  Sum_probs=199.5

Q ss_pred             eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC
Q psy8448          93 KQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG  172 (482)
Q Consensus        93 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg  172 (482)
                      .+++.||++.|++++|+|++++|++|+.||+|++||+++++....+..       +|...|++++|+|+++ +++++.|+
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-------~h~~~v~~v~~~~~g~-~~~~~~d~   76 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-------VHATMITGIKTTSKGD-LFTVSWDD   76 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-------SCSSCEEEEEECTTSC-EEEEETTT
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-------CCCCcEEEEEeeccce-eeccccee
Confidence            467789999999999999999999999999999999999887765532       3678999999999987 56677899


Q ss_pred             cEEEEEcCCCeE--eEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEE
Q psy8448         173 KVKIWKIATGQC--LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSV  250 (482)
Q Consensus       173 ~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  250 (482)
                      .+++|+......  .......+...+.+++|+|++..+++++ ++.+.+|+..  +.....  ....+.+++|+|++++|
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l  151 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFV  151 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEE
T ss_pred             eEEEeccCCccccccccccccccccccccccccccccccccc-cccccccccc--cccccc--ccccccccccccccccc
Confidence            999999865432  1112235677899999999998777666 6789999853  222222  34567899999999999


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEE
Q psy8448         251 LSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       251 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~  329 (482)
                      ++++.||.|++||+++++.......  .|...|.+++|+|++ .++++++.|+.|++||+ ++...........|...|+
T Consensus       152 ~~g~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~  228 (299)
T d1nr0a2         152 AVGGQDSKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA  228 (299)
T ss_dssp             EEEETTSEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999988765443221  678899999999998 89999999999999999 5666655555555688999


Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         330 CCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      +++|+|++++|++|+.||.|++|++
T Consensus       229 ~l~~s~~~~~l~sgs~dg~i~iwd~  253 (299)
T d1nr0a2         229 CVSWSPDNVRLATGSLDNSVIVWNM  253 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccceEEEcCCCEEEEEEC
Confidence            9999999999999999999995543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=262.55  Aligned_cols=284  Identities=21%  Similarity=0.366  Sum_probs=222.7

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      .++.||++.|.+ +++++|++||||+.||+|+|||+.+++.+..+.        +|...|.+++|+|+  +|++++.|+.
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------~h~~~V~~v~~~~~--~l~s~s~D~~   78 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--------GHTGGVWSSQMRDN--IIISGSTDRT   78 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECC--------CCSSCEEEEEEETT--EEEEEETTSC
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe--------CCCCCEEEEEeCCC--ccccceeccc
Confidence            445699999865 366679999999999999999999988766554        46889999999875  8999999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCe--------------------------------------EEEEEccCCCEEEEEECCC
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGV--------------------------------------TCIQFSRDNSQILTASFDT  215 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v--------------------------------------~~i~~~~~~~~l~~~~~dg  215 (482)
                      +++|+........... .+...+                                      ......+....+++++.|+
T Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          79 LKVWNAETGECIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             EEEEETTTTEEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             ccccccccccceeccc-ccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            9999987654433221 111111                                      1122334556788889999


Q ss_pred             eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCE
Q psy8448         216 YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       216 ~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  295 (482)
                      .|++||.+..+.+..+.+|...+..+.  +++.++++++.||.|++||++.++.+..+.   .|...+.++.+++   ++
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~---~~  229 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELKD---NI  229 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEEET---TE
T ss_pred             eEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEec---ccccceeEEecCC---CE
Confidence            999999999998888888877665555  467899999999999999999999888777   7888888888875   68


Q ss_pred             EEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecc
Q psy8448         296 FVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEET  374 (482)
Q Consensus       296 l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  374 (482)
                      +++++.|+.|++||. ..+....+..+..+...+.++.++  ++++++|+.||.|+                  +|++++
T Consensus       230 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~------------------iwd~~t  289 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVK------------------LWDLKT  289 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEE------------------EEETTT
T ss_pred             EEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEE------------------EEECCC
Confidence            999999999999999 567777777776667788877775  56999999999999                  666666


Q ss_pred             cceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceec
Q psy8448         375 GVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVH  454 (482)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  454 (482)
                      ++.+..+..                                                       .          ...+|
T Consensus       290 g~~i~~~~~-------------------------------------------------------~----------~~~~~  304 (342)
T d2ovrb2         290 GEFIRNLVT-------------------------------------------------------L----------ESGGS  304 (342)
T ss_dssp             CCEEEEEEE-------------------------------------------------------C----------TTGGG
T ss_pred             CCEEEEEec-------------------------------------------------------c----------cCCCC
Confidence            633322211                                                       0          23478


Q ss_pred             ccceeeccccCCcceEEEEecCce----eecC
Q psy8448         455 EKLVIGLTHHPHQNLLGTYSEDGL----LRFS  482 (482)
Q Consensus       455 ~~~v~~~~~sp~~~~l~s~~~Dg~----i~iW  482 (482)
                      ...|++++|+|++.+||+|+.||+    |++|
T Consensus       305 ~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~  336 (342)
T d2ovrb2         305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVL  336 (342)
T ss_dssp             TCEEEEEEECSSEEEEEEECSSSSSCCEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCCCeeEEEEE
Confidence            889999999999999999999996    6666

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-35  Score=264.80  Aligned_cols=259  Identities=20%  Similarity=0.340  Sum_probs=231.1

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccE
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAV  153 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i  153 (482)
                      ++.+.+|+.......     ..+.+|...|.+++|+|++.++++++.++.+.+|+....+....+.        +|...+
T Consensus        38 Dg~i~iWd~~~~~~~-----~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  104 (317)
T d1vyhc1          38 DATIKVWDYETGDFE-----RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH--------GHDHNV  104 (317)
T ss_dssp             SSCEEEEETTTCCCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC--------CCSSCE
T ss_pred             CCeEEEEECCCCCEE-----EEEeCCCCcEEEEeeecccccccccccccccccccccccccccccc--------cccccc
Confidence            677889987544322     2334899999999999999999999999999999988776554443        346889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec
Q psy8448         154 MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       154 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  233 (482)
                      .++.|+|+++.+++++.|+.+++||+++++....+ ..|...+.+++|+|++.+|++++.|+.|++|++.+++....+.+
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~  183 (317)
T d1vyhc1         105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE  183 (317)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eeeeccCCCceEEeeccCcceeEeecccceeeeEE-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEec
Confidence            99999999999999999999999999999988888 68899999999999999999999999999999999999999999


Q ss_pred             cccceeEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC
Q psy8448         234 HSSFVNDITFTAD--------------------GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT  293 (482)
Q Consensus       234 ~~~~i~~l~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  293 (482)
                      |...+.+++|+|+                    +..+++++.|+.|++||+++++++..+.   +|...|.+++++|++ 
T Consensus       184 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-  259 (317)
T d1vyhc1         184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGG-  259 (317)
T ss_dssp             CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSS-
T ss_pred             CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe---CCCCCEEEEEECCCC-
Confidence            9999999999875                    3578999999999999999999988887   888999999999998 


Q ss_pred             CEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         294 EHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       294 ~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      .+|++++.||.|++||+ +++.+..+..+   ...|++++|+|++++|++|+.||.|+|||
T Consensus       260 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h---~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         260 KFILSCADDKTLRVWDYKNKRCMKTLNAH---EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEETTTEEEEECCTTSCCCEEEECC---SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCeEEEEECCCCcEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            89999999999999999 67778888765   78899999999999999999999999775

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-35  Score=266.78  Aligned_cols=246  Identities=15%  Similarity=0.238  Sum_probs=193.2

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCC-eEEEEecCCCceeeccccccccccccc-cccEEEEEEcC--CCCEEEEEeCCCcEEE
Q psy8448         101 SHVECARFSPDGQYLITGSVDG-FIEVWNFTTGKIRKDLKYQAQDNFMLM-EEAVMSLAYSR--DSEMLASGSQSGKVKI  176 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~i~~l~~~~--~~~~l~~~~~dg~i~i  176 (482)
                      ..+++++|+|+++.|+.++.+. .|+.|+....+..      ....+.+| ...|++++|+|  ++++|++|+.||+|++
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~------~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~i   91 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVP------PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV   91 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSC------SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCcc------ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEE
Confidence            3568899999999999887543 3455554433221      11222334 46899999998  5689999999999999


Q ss_pred             EEcCCCeEeEEe-------ecccCCCeEEEEEccCCCEEEEEEC--CCeEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448         177 WKIATGQCLRKL-------EKAHSLGVTCIQFSRDNSQILTASF--DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       177 wd~~~~~~~~~~-------~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      ||+..++....+       ...|..+|.+++|+++++++++++.  ++.+.+|+.++++.+..+.+|...|.+++|+|++
T Consensus        92 Wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  171 (325)
T d1pgua1          92 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR  171 (325)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS
T ss_pred             eeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccc
Confidence            998654322111       1457889999999999999988764  5689999999999999999999999999999988


Q ss_pred             CE-EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCccc-
Q psy8448         248 HS-VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKRE-  324 (482)
Q Consensus       248 ~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~-  324 (482)
                      .. +++++.|+.+++||+...+....+.....+...|.+++|+|++..++++++.|+.|++||+ +++.+..+..+... 
T Consensus       172 ~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v  251 (325)
T d1pgua1         172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV  251 (325)
T ss_dssp             SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred             cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccc
Confidence            65 6789999999999999888777776666788899999999987789999999999999999 67888888765321 


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         325 GGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       325 ~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ...+.+++| |+|++|++++.|+.|+||+
T Consensus       252 ~~~~~s~~~-~dg~~l~s~s~D~~i~iwd  279 (325)
T d1pgua1         252 QGGIFALSW-LDSQKFATVGADATIRVWD  279 (325)
T ss_dssp             CSCEEEEEE-SSSSEEEEEETTSEEEEEE
T ss_pred             ccceeeeec-cCCCEEEEEeCCCeEEEEE
Confidence            222344444 6899999999999999443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-34  Score=266.99  Aligned_cols=278  Identities=26%  Similarity=0.367  Sum_probs=216.9

Q ss_pred             CCCCceeecc-CCcccccccccccccc-------------ccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEec
Q psy8448          64 LPPGTTIDLF-RGKAAMKDQEEEKYPT-------------QLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNF  129 (482)
Q Consensus        64 ~~~g~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~  129 (482)
                      .|+|..++.. ++.+.+|+........             ........+|...|++++|+|++++|++|+.||.|++||.
T Consensus        71 s~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~  150 (388)
T d1erja_          71 SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI  150 (388)
T ss_dssp             CTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccc
Confidence            4566655442 5567778764432211             1122233478889999999999999999999999999999


Q ss_pred             CCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc-CCCEE
Q psy8448         130 TTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR-DNSQI  208 (482)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l  208 (482)
                      ..++......        +|...|.++++++++..+++++.++.+++||..+....... . +.....++.+++ ++.+|
T Consensus       151 ~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l  220 (388)
T d1erja_         151 ENRKIVMILQ--------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-S-IEDGVTTVAVSPGDGKYI  220 (388)
T ss_dssp             TTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-E-CSSCEEEEEECSTTCCEE
T ss_pred             cccccccccc--------cccccccccccccccccccccccceeeeeeecccccccccc-c-cccccccccccCCCCCeE
Confidence            9887665443        35789999999999999999999999999999988877766 3 344455556655 78999


Q ss_pred             EEEECCCeEEEEeCCCCceEEEe-------eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee-------
Q psy8448         209 LTASFDTYVRIHGLKSGKMLKEF-------RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK-------  274 (482)
Q Consensus       209 ~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------  274 (482)
                      ++++.|+.|++||.+++.....+       .+|...|.+++|+|++++|++++.||.|++||++++.......       
T Consensus       221 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  300 (388)
T d1erja_         221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  300 (388)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE
T ss_pred             EEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccce
Confidence            99999999999999998876655       3578899999999999999999999999999998754332211       


Q ss_pred             --ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEE------cCCCCEEEEEeC
Q psy8448         275 --SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTT------SPRGEWIYCVGE  345 (482)
Q Consensus       275 --~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~------~~~g~~l~~~~~  345 (482)
                        ....|...|.+++|+|++ .+|++|+.||.|++||+ +++.+..+..|   ...|.++++      +|++++|++|+.
T Consensus       301 ~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~l~~H---~~~V~~~~~~~~~~~spd~~~l~s~s~  376 (388)
T d1erja_         301 EVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGH---RNSVISVAVANGSSLGPEYNVFATGSG  376 (388)
T ss_dssp             EEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECC---SSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             eeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEeCC---CCCEEEEEEecCcccCCCCCEEEEEeC
Confidence              112677889999999998 89999999999999999 68888888765   678888874      678999999999


Q ss_pred             CcEEEEEeeh
Q psy8448         346 DMVLVVRLIQ  355 (482)
Q Consensus       346 dg~i~iw~~~  355 (482)
                      ||.|+||+++
T Consensus       377 Dg~I~iW~~~  386 (388)
T d1erja_         377 DCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEEEE
T ss_pred             CCEEEEEeee
Confidence            9999988875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-34  Score=262.91  Aligned_cols=279  Identities=20%  Similarity=0.293  Sum_probs=208.8

Q ss_pred             eeeecCCCCcE-EEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448          93 KQIKFGSKSHV-ECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus        93 ~~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      +..+.||.+.| +|++|  ++++||+|+.||+|+|||+.+++.+..+.        +|+++|++++|+|+ .+|++|+.|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~--------~H~~~V~~l~~s~~-~~l~s~s~D   73 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS--------GHDGGVWALKYAHG-GILVSGSTD   73 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEE--------CCSSCEEEEEEETT-TEEEEEETT
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEE--------CCCCCEEEEEEcCC-CEEEEEecc
Confidence            34566998886 66655  57899999999999999999988766543        46899999999986 589999999


Q ss_pred             CcEEEEEcCCCeEeEEeecc-cCCCeEEEEEccCCCEEEEEECCCeEEEEeC----------------------------
Q psy8448         172 GKVKIWKIATGQCLRKLEKA-HSLGVTCIQFSRDNSQILTASFDTYVRIHGL----------------------------  222 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~----------------------------  222 (482)
                      +.|++|++...+........ +........+.+++.++++++.|+.|++||+                            
T Consensus        74 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d1nexb2          74 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  153 (355)
T ss_dssp             CCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred             cccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence            99999999887665544211 1122333444455555555555555555554                            


Q ss_pred             -----------------------------------CCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy8448         223 -----------------------------------KSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTT  267 (482)
Q Consensus       223 -----------------------------------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~  267 (482)
                                                         ++++.+....++...+.++.++|++..+++++.|+.|++||++++
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         154 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  233 (355)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC
T ss_pred             eeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc
Confidence                                               444444445556777889999999999999999999999999999


Q ss_pred             ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEE-EEEcCCCCEEEEEeC
Q psy8448         268 ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLC-CTTSPRGEWIYCVGE  345 (482)
Q Consensus       268 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~-~~~~~~g~~l~~~~~  345 (482)
                      ..+..+.   +|...|.++++++   .++++++.||.|++||++ ........     ...+.+ .++++++.+|++| .
T Consensus       234 ~~~~~~~---~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~g-~  301 (355)
T d1nexb2         234 ELMYTLQ---GHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH-----HTNLSAITTFYVSDNILVSG-S  301 (355)
T ss_dssp             CEEEEEC---CCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEEE-----CTTCCCCCEEEECSSEEEEE-E
T ss_pred             ccccccc---ccccccccccccc---ceeeeeecccccccccccccceecccc-----cCCceEEEEEcCCCCEEEEE-e
Confidence            9888887   8899999999975   689999999999999994 44333322     223333 4567777777666 4


Q ss_pred             CcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHH
Q psy8448         346 DMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELI  425 (482)
Q Consensus       346 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  425 (482)
                      ||.|+                  +|++++|                               ++                 
T Consensus       302 d~~i~------------------vwd~~tg-------------------------------~~-----------------  315 (355)
T d1nexb2         302 ENQFN------------------IYNLRSG-------------------------------KL-----------------  315 (355)
T ss_dssp             TTEEE------------------EEETTTC-------------------------------CB-----------------
T ss_pred             CCEEE------------------EEECCCC-------------------------------CE-----------------
Confidence            89999                  6677776                               22                 


Q ss_pred             HHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         426 ELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                 +..          .+.+|.++|.+++|+|+ .++++++.||+++||
T Consensus       316 -----------~~~----------~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         316 -----------VHA----------NILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             -----------CCS----------CTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             -----------EEE----------EecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence                       011          45679999999999987 578889999998887

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4e-34  Score=264.91  Aligned_cols=280  Identities=14%  Similarity=0.182  Sum_probs=217.6

Q ss_pred             CCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccc
Q psy8448          64 LPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQ  141 (482)
Q Consensus        64 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  141 (482)
                      .|+|..+++  .++.+.+|+......   .....+.+|.++|++++|+|++++|++|+.|++|+|||+.++.....+.. 
T Consensus        16 s~dg~~la~~~~~~~i~iw~~~~~~~---~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-   91 (371)
T d1k8kc_          16 NKDRTQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI-   91 (371)
T ss_dssp             CTTSSEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC-
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCE---EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccc-
Confidence            345555443  346678888754322   22344569999999999999999999999999999999987765443332 


Q ss_pred             cccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE---eEEeecccCCCeEEEEEccCCCEEEEEECCCeEE
Q psy8448         142 AQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC---LRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVR  218 (482)
Q Consensus       142 ~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~  218 (482)
                           .+|...|++++|+|++++|++++.|+.+++|++.....   .......|...|.+++|+|++++|++|+.|+.|+
T Consensus        92 -----~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          92 -----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             -----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             -----ccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence                 23678999999999999999999999999999876543   2333357888999999999999999999999999


Q ss_pred             EEeCCCC------------------ceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCc
Q psy8448         219 IHGLKSG------------------KMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASD  280 (482)
Q Consensus       219 i~d~~~~------------------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  280 (482)
                      +||....                  +.+.....|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.   .|.
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~  243 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---SET  243 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---CSS
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee---ccc
Confidence            9998643                  3455667889999999999999999999999999999999999888887   788


Q ss_pred             cceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEec-------------------------------------CC
Q psy8448         281 IAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLS-------------------------------------SG  321 (482)
Q Consensus       281 ~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~-------------------------------------~~  321 (482)
                      .+|.+++|+|++ .+++ ++.|+.+++|..  ....+....                                     ..
T Consensus       244 ~~v~s~~fs~d~-~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (371)
T d1k8kc_         244 LPLLAVTFITES-SLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD  321 (371)
T ss_dssp             CCEEEEEEEETT-EEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred             ccceeeeecCCC-CEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceec
Confidence            899999999997 5555 455777766654  222111100                                     00


Q ss_pred             cccCcCEEEEEEcCCC----CEEEEEeCCcEEEEEeehhh
Q psy8448         322 KREGGDFLCCTTSPRG----EWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       322 ~~~~~~v~~~~~~~~g----~~l~~~~~dg~i~iw~~~~~  357 (482)
                      ..|...|+++++.+.+    ..+++++.||.|+||+++..
T Consensus       322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             ccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence            1256789999987754    46899999999999988643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-34  Score=260.35  Aligned_cols=282  Identities=18%  Similarity=0.245  Sum_probs=215.5

Q ss_pred             CCCceeeccCCcc-ccccccccccccccceeeecCC-CCcEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeecccc
Q psy8448          65 PPGTTIDLFRGKA-AMKDQEEEKYPTQLSKQIKFGS-KSHVECARFSP--DGQYLITGSVDGFIEVWNFTTGKIRKDLKY  140 (482)
Q Consensus        65 ~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  140 (482)
                      |.|..+++..+.. .++..............+ .+| ...|++++|+|  ++.+||+|+.||+|+|||+..++.......
T Consensus        27 ~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~  105 (325)
T d1pgua1          27 PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV  105 (325)
T ss_dssp             TTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeec
Confidence            4555555544332 232222222222233333 365 57899999998  678999999999999999988776655555


Q ss_pred             ccccccccccccEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCE-EEEEECCCeE
Q psy8448         141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQ--SGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQ-ILTASFDTYV  217 (482)
Q Consensus       141 ~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i  217 (482)
                      .....+..|..+|.+++|++++++|++++.  ++.+.+|+..+++.+..+ .+|...|.+++|+|++++ +++++.|+.+
T Consensus       106 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  184 (325)
T d1pgua1         106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSV  184 (325)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred             ccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee-eecccccccccccccccceEEEeeccccc
Confidence            544556668899999999999999988764  678999999999998888 689999999999998765 6789999999


Q ss_pred             EEEeCCCCceEEEe---eccccceeEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEc---C
Q psy8448         218 RIHGLKSGKMLKEF---RGHSSFVNDITFTAD-GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLL---P  290 (482)
Q Consensus       218 ~i~d~~~~~~~~~~---~~~~~~i~~l~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~---~  290 (482)
                      ++||.+..+....+   ..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.   .|..++..+.|+   |
T Consensus       185 ~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~~~~  261 (325)
T d1pgua1         185 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE---DDQEPVQGGIFALSWL  261 (325)
T ss_dssp             EEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC---BTTBCCCSCEEEEEES
T ss_pred             ccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc---ccccccccceeeeecc
Confidence            99999888766554   356778999999996 6889999999999999999999888887   566666555554   5


Q ss_pred             CCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcC--EEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         291 KNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGD--FLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       291 ~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~--v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      ++ .+|++++.|+.|++||+ .++.+..+..+.. ...  ..++.+.++ .+|++++.||.|++||+
T Consensus       262 dg-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         262 DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQ-QLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTT-CGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             CC-CEEEEEeCCCeEEEEECCCCCEEEEEEecCC-cccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            66 79999999999999999 5777777765432 222  334445443 47899999999998874

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-34  Score=258.79  Aligned_cols=255  Identities=15%  Similarity=0.192  Sum_probs=196.2

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC-CCEEEEEeCCC
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD-SEMLASGSQSG  172 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~~~~~dg  172 (482)
                      +++.+|++.|++|+|+|++++||+|+.||+|+|||++++.....+.     ...+|..+|++++|+|+ +.+|++|+.||
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~-----~~~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL-----QSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE-----EEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEE-----EecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            4667999999999999999999999999999999998765433222     12247899999999986 55899999999


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEe----ec--cccceeEEEEcCC
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEF----RG--HSSFVNDITFTAD  246 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~--~~~~i~~l~~~~~  246 (482)
                      .|++|++..+.........+........+.++...+++++.++.+++||++.+......    ..  .......+.+.+.
T Consensus        80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             ceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            99999999888777764455555566677778889999999999999998765432222    22  2233456777888


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc----------EEE
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ----------IVR  316 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~  316 (482)
                      +..+++++.|+.|++||++..+..............+.+..+.+.....+++++.||.+.+|+....          ...
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            9999999999999999998876555444333555667777777776689999999999999987421          111


Q ss_pred             E---ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         317 S---LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       317 ~---~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      .   ......+...+.+++|+|++++|++|+.||.|++||
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence            1   112233466789999999999999999999999443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-32  Score=249.95  Aligned_cols=275  Identities=16%  Similarity=0.245  Sum_probs=226.9

Q ss_pred             CCCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccc
Q psy8448          63 LLPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKY  140 (482)
Q Consensus        63 ~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  140 (482)
                      +.|++..++.  .++.+.+|+.......     ....+|...|++++|+|+++++++|+.|+.+.+|+..........  
T Consensus        63 ~s~~~~~l~sgs~Dg~v~iWd~~~~~~~-----~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--  135 (340)
T d1tbga_          63 WGTDSRLLVSASQDGKLIIWDSYTTNKV-----HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV--  135 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTTEEE-----EEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCE--
T ss_pred             ECCCCCEEEEEECCCceeeeecccceeE-----EEEecccccEEeeEeeccceeeeeecccceeeccccccccccccc--
Confidence            3466665554  3677999987644322     233489999999999999999999999999999998765433221  


Q ss_pred             ccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448         141 QAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH  220 (482)
Q Consensus       141 ~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~  220 (482)
                        ...+.+|.......... .+..+.....+.....+........... ..+...+....+.+.+.++++++.|+.|++|
T Consensus       136 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~  211 (340)
T d1tbga_         136 --SRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLW  211 (340)
T ss_dssp             --EEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             --ceecccccccccccccc-cccccccccccccccccccccccccccc-cccceeEeeeccccccceeEEeecCceEEEE
Confidence              12233455555555544 4456788888999999998877766665 5678889999999999999999999999999


Q ss_pred             eCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448         221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       221 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      |+++++++..+.+|...|++++|+|++++|++++.||.|++||++.......+.. ..+...+.+++|+|++ .++++++
T Consensus       212 d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~-~~l~~g~  289 (340)
T d1tbga_         212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKSG-RLLLAGY  289 (340)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECSSS-CEEEEEE
T ss_pred             ECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc-ccccCceEEEEECCCC-CEEEEEE
Confidence            9999999999999999999999999999999999999999999999887766542 2556789999999998 8999999


Q ss_pred             CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         301 KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       301 ~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      .||.|++||+ +++.+..+..|   ...|++++|+|++++|++|+.||.|+||+
T Consensus       290 ~dg~i~iwd~~~~~~~~~~~~H---~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         290 DDFNCNVWDALKADRAGVLAGH---DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEcCC---CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999 68888888765   77899999999999999999999999775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-31  Score=238.47  Aligned_cols=231  Identities=23%  Similarity=0.357  Sum_probs=185.5

Q ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy8448          97 FGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKI  176 (482)
Q Consensus        97 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~i  176 (482)
                      .+|...|+|++|  |+++||+|+.||+|+|||+.+++.+..+.        +|...|++++|  ++++|++|+.|+.|++
T Consensus        12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~--------~H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT--------GHTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC--------CCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEe--------cCCCCEeeeec--ccceeecccccccccc
Confidence            478899999765  78999999999999999999988776554        46889999987  5779999999999999


Q ss_pred             EEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce---EEEeeccccceeEEEEcCCCCEEEEE
Q psy8448         177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM---LKEFRGHSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~l~~~~~~~~l~~~  253 (482)
                      |++..+....... .+..  ....+.+....++++..++.+.+||......   ...+..|...+..+.+.+  ..++++
T Consensus        80 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~  154 (293)
T d1p22a2          80 WDVNTGEMLNTLI-HHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA  154 (293)
T ss_dssp             EESSSCCEEEEEC-CCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEE
T ss_pred             ccccccccccccc-cccc--ccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccc
Confidence            9999988777663 3332  2334555667899999999999999987653   344566888888777754  578899


Q ss_pred             eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEE
Q psy8448         254 SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCT  332 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~  332 (482)
                      +.|+.|++||+++++.+..+.   ++...+..+.+.+   ..+++++.|+.|++||+ ....+.....+   ...+.  .
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~v~--~  223 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVR--C  223 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCC---SSCEE--E
T ss_pred             cCCCceeeecCCCCcEEEEEc---ccccccccccCCC---CeEEEecCCCEEEEEecccceeeeeeccc---ceeee--e
Confidence            999999999999999888887   7777888887764   68999999999999999 56666666544   44554  4


Q ss_pred             EcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         333 TSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       333 ~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +++++.+|++|+.||.|++|++.
T Consensus       224 ~~~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         224 IRFDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEEHH
T ss_pred             ccccceEEEEEcCCCEEEEEECC
Confidence            56788999999999999966554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-32  Score=252.92  Aligned_cols=272  Identities=14%  Similarity=0.204  Sum_probs=197.6

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccccccccc------EEEEEEcC-CCCEEE
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA------VMSLAYSR-DSEMLA  166 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~------i~~l~~~~-~~~~l~  166 (482)
                      ....+|.+.|.++++++  ++|++|+.|++|+|||..+.+........  .....|...      ...+..+. ++.+++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKS--YSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGE--EEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccccee--EeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            45569999999999874  69999999999999998765432111110  011112222      22222222 335778


Q ss_pred             EEeCCCcEEEEEcCCCeEeEEe-----e----cccCCCeEEEEEccC-----CCEEEEEECCCeEEEEeCCCCc------
Q psy8448         167 SGSQSGKVKIWKIATGQCLRKL-----E----KAHSLGVTCIQFSRD-----NSQILTASFDTYVRIHGLKSGK------  226 (482)
Q Consensus       167 ~~~~dg~i~iwd~~~~~~~~~~-----~----~~~~~~v~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~~~------  226 (482)
                      +++.||.|++|++........+     .    ..+...+..++|.++     +.++++++.||.+++|++....      
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            8999999999997544221111     0    124456778888775     4578999999999999975321      


Q ss_pred             ------------eEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeec---cCCCccceeEEEEcCC
Q psy8448         227 ------------MLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS---LGASDIAVNSIHLLPK  291 (482)
Q Consensus       227 ------------~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~v~~i~~~~~  291 (482)
                                  .......+...+.+++|+|++ +|++|+.||.|++||+++++++..+..   +.+|..+|.+++|+|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence                        011112355668999999987 899999999999999999988776653   2368899999999999


Q ss_pred             CCCEEEEEeCCC---eEEEEEc-CCcEEEEecCC----------cccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhh
Q psy8448         292 NTEHFVVCNKTN---TVVIMNM-QGQIVRSLSSG----------KREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       292 ~~~~l~~~~~d~---~i~i~d~-~~~~~~~~~~~----------~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                      + .+|++++.|+   .|++||+ .++.+..+...          ..|...|++++|+|++++|++|+.|+.|+       
T Consensus       243 g-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~-------  314 (393)
T d1sq9a_         243 G-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR-------  314 (393)
T ss_dssp             T-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE-------
T ss_pred             c-ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEE-------
Confidence            9 8999999887   4899999 57777766421          23578899999999999999999999999       


Q ss_pred             hhhhcccccceeeeecccceeeccccccccee
Q psy8448         358 LKESNLMKTLQCLQEETGVSLNTVDSVDGFIA  389 (482)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (482)
                                 +|++.+|.++.++.+|.+.+.
T Consensus       315 -----------vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         315 -----------FWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             -----------EEETTTTEEEEEEECCGGGCS
T ss_pred             -----------EEECCCCCEEEEECCcCCccc
Confidence                       777888888888877776654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-32  Score=243.79  Aligned_cols=266  Identities=16%  Similarity=0.167  Sum_probs=206.6

Q ss_pred             eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448          94 QIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus        94 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      ..+.||.++|++++|+|    |++|+.||+|++||+.++.             .+|...|.++++++++ .+++++.|++
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-------------~~h~~~V~~~~~~~~~-~~~s~s~D~~   68 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-------------QDHSNLIVSLDNSKAQ-EYSSISWDDT   68 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-------------CCCCSCEEEEECCSTT-CCEEEETTTE
T ss_pred             EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-------------CCCCCCEEEEEecCCC-eEEEEeeccc
Confidence            34569999999999987    9999999999999987532             2467899999999765 5889999999


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEE
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~  253 (482)
                      +++|++...+        ....+.++++++++..++++ .++.+.+|+..+++.+..+..+ ..+  .++++++..++++
T Consensus        69 v~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~  136 (287)
T d1pgua2          69 LKVNGITKHE--------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVG  136 (287)
T ss_dssp             EEETTEEEEE--------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEE
T ss_pred             cccccccccc--------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-cee--eeeeccCcceeee
Confidence            9999975321        33457788898887666554 5778999999999888877643 333  4566778888888


Q ss_pred             eCCC-cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEE
Q psy8448         254 SSDG-TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCC  331 (482)
Q Consensus       254 ~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~  331 (482)
                      +.++ .+++|++...+....+..  .+..++.+++|+|++ .+|++++.||.|++||+. +........  .|...|.++
T Consensus       137 ~~~~~~v~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~~~  211 (287)
T d1pgua2         137 LEEGNTIQVFKLSDLEVSFDLKT--PLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVKTSRWA--FRTSKINAI  211 (287)
T ss_dssp             ETTTSCEEEEETTEEEEEEECSS--CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEECCSC--CCSSCEEEE
T ss_pred             ccccceeeeeeccccceeeeeee--ccCCceeEEEeccCc-cccccccccccccceeeccccccccccc--cccccccee
Confidence            8765 699999987655444432  567789999999998 899999999999999995 444333222  237789999


Q ss_pred             EEcCC----------CCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhc
Q psy8448         332 TTSPR----------GEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLK  401 (482)
Q Consensus       332 ~~~~~----------g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (482)
                      +|+|+          +.+|++|+.|+.|+||                  ++.++.                         
T Consensus       212 ~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw------------------~~~~~~-------------------------  248 (287)
T d1pgua2         212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIY------------------SVKRPM-------------------------  248 (287)
T ss_dssp             EECCCC------CCSCCEEEEEETTSCEEEE------------------ESSCTT-------------------------
T ss_pred             eecccccccccccCCCCeeEeecCCCeEEEE------------------ECCCCC-------------------------
Confidence            99875          4689999999999955                  443320                         


Q ss_pred             cccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeec
Q psy8448         402 SVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRF  481 (482)
Q Consensus       402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~i  481 (482)
                           ++                             ..          .+.+|.+.|++++|+|++ .|+|++.||+|++
T Consensus       249 -----~~-----------------------------~~----------~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~i  283 (287)
T d1pgua2         249 -----KI-----------------------------IK----------ALNAHKDGVNNLLWETPS-TLVSSGADACIKR  283 (287)
T ss_dssp             -----CC-----------------------------EE----------ETTSSTTCEEEEEEEETT-EEEEEETTSCEEE
T ss_pred             -----eE-----------------------------EE----------EeCCCCCCeEEEEECCCC-EEEEEECCCeEEE
Confidence                 11                             22          556899999999999987 5889999999999


Q ss_pred             C
Q psy8448         482 S  482 (482)
Q Consensus       482 W  482 (482)
                      |
T Consensus       284 W  284 (287)
T d1pgua2         284 W  284 (287)
T ss_dssp             E
T ss_pred             E
Confidence            9

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-31  Score=238.79  Aligned_cols=273  Identities=14%  Similarity=0.142  Sum_probs=206.3

Q ss_pred             CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      |+|..++.  .++.+.+|+.....    ..+.+..+|...|++++|+|+++++ +++.|+.+++|+..........    
T Consensus        22 ~dg~~l~s~s~Dg~v~vWd~~~~~----~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~----   92 (299)
T d1nr0a2          22 ADGKTLFSADAEGHINSWDISTGI----SNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSK----   92 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCC----EEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTS----
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCc----EEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccccc----
Confidence            44444443  35778889875432    2233445899999999999999754 5567999999998754422111    


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeC
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGL  222 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~  222 (482)
                       .....+...+.+++|+|+++.+++++ ++.+.+|+..  +....   .....+.+++|+|+++++++++.|+.|++||+
T Consensus        93 -~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~  165 (299)
T d1nr0a2          93 -AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEV---PISYNSSCVALSNDKQFVAVGGQDSKVHVYKL  165 (299)
T ss_dssp             -CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEE---ECSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred             -cccccccccccccccccccccccccc-cccccccccc--ccccc---cccccccccccccccccccccccccccccccc
Confidence             11223567899999999998776665 5689999853  22222   24456889999999999999999999999999


Q ss_pred             CCCceEE-EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         223 KSGKMLK-EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       223 ~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      ++++... ....|...|.+++|+|++++|++++.|+.|++||+.++...........|..+|.+++|+|++ .++++++.
T Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~  244 (299)
T d1nr0a2         166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN-VRLATGSL  244 (299)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS-SEEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cceEEEcC
Confidence            8877543 345688999999999999999999999999999999887776666666889999999999998 89999999


Q ss_pred             CCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         302 TNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       302 d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      |+.|++||++ +...........+...+.++.+ +++++|++++.||.|++|+++
T Consensus       245 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            9999999994 3322222222222456666655 567899999999999988763

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1.2e-30  Score=240.16  Aligned_cols=189  Identities=11%  Similarity=0.092  Sum_probs=161.3

Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC--cEEEEEcCC
Q psy8448         105 CARFSP-DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG--KVKIWKIAT  181 (482)
Q Consensus       105 ~~~~s~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg--~i~iwd~~~  181 (482)
                      .-.||| ||+++|+++ +|.|++||+.++.....          +|...|.+++|+|||++|++++.+.  .|++||+++
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~----------~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~   75 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV----------PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT   75 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC----------SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc----------cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC
Confidence            357999 999999987 57999999988775532          2568899999999999998877553  799999988


Q ss_pred             CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-------
Q psy8448         182 GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-------  254 (482)
Q Consensus       182 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-------  254 (482)
                      ++... + ..|...+.+++|+|++++|++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.+.       
T Consensus        76 ~~~~~-~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~  153 (360)
T d1k32a3          76 GKAEK-F-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET  153 (360)
T ss_dssp             CCEEE-C-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             CcEEE-e-eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccce
Confidence            76554 4 57889999999999999999999999999999999999999999999999999999999998654       


Q ss_pred             ---CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q psy8448         255 ---SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ  311 (482)
Q Consensus       255 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~  311 (482)
                         .++.+++||+.+++.....    .+...+..++|+|+| +.|++++.++.+.+|+..
T Consensus       154 ~~~~~~~~~v~d~~~~~~~~~~----~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         154 DGYVMQAIHVYDMEGRKIFAAT----TENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             CSCCEEEEEEEETTTTEEEECS----CSSSBEEEEEECTTS-CEEEEEESCCCCCEECSS
T ss_pred             eeccccceeeeccccCceeeec----ccccccccccccCCC-CEEEEEeCCCceEccccc
Confidence               3456999999988765544    556778899999999 889999999999999873

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.7e-28  Score=218.41  Aligned_cols=267  Identities=22%  Similarity=0.370  Sum_probs=206.6

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccccc-------
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNF-------  146 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-------  146 (482)
                      ++.+.+|+......     ...+.+|.+.|.+++|+|+  +|++|+.|+.+++|+..................       
T Consensus        36 Dg~i~vWd~~~~~~-----~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (342)
T d2ovrb2          36 DNTLKVWSAVTGKC-----LRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK  108 (342)
T ss_dssp             TSCEEEEETTTCCE-----EEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred             CCeEEEEECCCCCE-----EEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccc
Confidence            67788998754332     2334599999999999975  999999999999999876554332221110000       


Q ss_pred             -----------------------ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc
Q psy8448         147 -----------------------MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR  203 (482)
Q Consensus       147 -----------------------~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~  203 (482)
                                             .............+....+++++.|+.|++||....+.+..+ ..|...+..+.+  
T Consensus       109 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~--  185 (342)
T d2ovrb2         109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL-QGHTNRVYSLQF--  185 (342)
T ss_dssp             EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEE-CCCSSCEEEEEE--
T ss_pred             cccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEE-cCcccccccccC--
Confidence                                   000011112233345667899999999999999999888887 567766655544  


Q ss_pred             CCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccce
Q psy8448         204 DNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAV  283 (482)
Q Consensus       204 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  283 (482)
                      ++.++++++.||.|++||++.++.+..+.+|...+.++++++  ++|++++.|+.|++||+...+....+.....|...+
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  263 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV  263 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCE
T ss_pred             CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeece
Confidence            788999999999999999999999999999999998888764  689999999999999999998888887666677788


Q ss_pred             eEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCC--cccCcCEEEEEEcCCCCEEEEEeCCcE----EEEEeeh
Q psy8448         284 NSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSG--KREGGDFLCCTTSPRGEWIYCVGEDMV----LVVRLIQ  355 (482)
Q Consensus       284 ~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~--~~~~~~v~~~~~~~~g~~l~~~~~dg~----i~iw~~~  355 (482)
                      .++.+++   .++++++.||.|++||+ +++.+..+...  ..+...|++++|+|++.+|++|+.||+    |++||++
T Consensus       264 ~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         264 TCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             eecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            8888765   68999999999999999 68887776532  234678999999999999999999985    8877664

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-28  Score=223.54  Aligned_cols=272  Identities=15%  Similarity=0.216  Sum_probs=196.0

Q ss_pred             ccccccccccE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEe
Q psy8448         143 QDNFMLMEEAV-MSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHG  221 (482)
Q Consensus       143 ~~~~~~h~~~i-~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d  221 (482)
                      ...+.+|.+.| +|+++  ++++|++|+.||+|++||+.+++.+..+ .+|..+|.+++|+|+ .+|++|+.|+.|++|+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEE-ECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            34567888775 66655  5789999999999999999999999998 689999999999985 5899999999999999


Q ss_pred             CCCCceEEEeeccc--cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeecc--------------------CCC
Q psy8448         222 LKSGKMLKEFRGHS--SFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSL--------------------GAS  279 (482)
Q Consensus       222 ~~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------------~~~  279 (482)
                      +...+.........  .......+.+++..+++++.|+.|++||+++..........                    ..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            99988776655433  33456677889999999999999999999876543322110                    011


Q ss_pred             ccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhh
Q psy8448         280 DIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYL  358 (482)
Q Consensus       280 ~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~  358 (482)
                      ...+.  .+.+++ .+++++..|+.+++||+ .++.+......   ...+.++.++|++.++++++.|+.|++|++    
T Consensus       161 ~~~v~--~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~----  230 (355)
T d1nexb2         161 MASVR--TVSGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGH---TDRIYSTIYDHERKRCISASMDTTIRIWDL----  230 (355)
T ss_dssp             SSCEE--EEEEET-TEEEEEETTSCEEEEETTTTEEEEEECCC---SSCEEEEEEETTTTEEEEEETTSCEEEEET----
T ss_pred             ccccc--cccccc-ceeeeecccceeeeeecccccceeeeecc---ccccccccccccceeeecccccceEEeeec----
Confidence            22222  334445 78999999999999999 56666666544   677899999999999999999999996554    


Q ss_pred             hhhcccccceeeeecccceeeccccccccee-------ccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhh
Q psy8448         359 KESNLMKTLQCLQEETGVSLNTVDSVDGFIA-------DINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELG  431 (482)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  431 (482)
                                    .++..+..+..+.+.+.       .++.++.|+.++.|+....                       
T Consensus       231 --------------~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------  273 (355)
T d1nexb2         231 --------------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY-----------------------  273 (355)
T ss_dssp             --------------TTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTC-----------------------
T ss_pred             --------------cccccccccccccccccccccccceeeeeeccccccccccccc-----------------------
Confidence                          44444444444433332       3455666666666644222                       


Q ss_pred             hhhhhccccCcccccccCcceecccceeeccc-cCCcceEEEEecCceeecC
Q psy8448         432 AARSLLRQTDPMIFMKQHEPEVHEKLVIGLTH-HPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~~~~l~s~~~Dg~i~iW  482 (482)
                            ..          .+..|...+.++.+ ++++++|++| .||.|+||
T Consensus       274 ------~~----------~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vw  308 (355)
T d1nexb2         274 ------SR----------KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIY  308 (355)
T ss_dssp             ------CE----------EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEE
T ss_pred             ------ce----------ecccccCCceEEEEEcCCCCEEEEE-eCCEEEEE
Confidence                  22          56678888887765 5566666555 59999998

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.2e-28  Score=223.96  Aligned_cols=257  Identities=15%  Similarity=0.173  Sum_probs=182.1

Q ss_pred             cccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE------eEEeecccCCCeEEEEE------cc-CCCEEEEEE
Q psy8448         146 FMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQC------LRKLEKAHSLGVTCIQF------SR-DNSQILTAS  212 (482)
Q Consensus       146 ~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~i~~------~~-~~~~l~~~~  212 (482)
                      ..+|+..|.++++++  +++++++.|++|++||..+.+.      .... ..|...+..+..      +. ++..+++++
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEee-eeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            457899999999874  6899999999999999765431      1111 234444333322      11 234678999


Q ss_pred             CCCeEEEEeCCCCceEEEe----------eccccceeEEEEcCC-----CCEEEEEeCCCcEEEEECCCCc---------
Q psy8448         213 FDTYVRIHGLKSGKMLKEF----------RGHSSFVNDITFTAD-----GHSVLSASSDGTVKMWNLKTTE---------  268 (482)
Q Consensus       213 ~dg~i~i~d~~~~~~~~~~----------~~~~~~i~~l~~~~~-----~~~l~~~~~dg~i~i~d~~~~~---------  268 (482)
                      .||.|++|++........+          ..+...+..++|.++     +.++++++.||.+++|++....         
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            9999999997654321111          124456778888775     4678999999999999975321         


Q ss_pred             ------eeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCC---cccCcCEEEEEEcCCCC
Q psy8448         269 ------CTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSG---KREGGDFLCCTTSPRGE  338 (482)
Q Consensus       269 ------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~---~~~~~~v~~~~~~~~g~  338 (482)
                            ..........+...+.+++|+|++  ++++|+.|+.|++||+ +++.+..+...   ..|..+|.+++|+|+|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                  111122222455668899999986  8899999999999999 57776665532   23578999999999999


Q ss_pred             EEEEEeCCcE---EEEEeehhhhhhhcccccceeeeecccceeecccccccceeccCCCcccchhccccccCCCchhhhh
Q psy8448         339 WIYCVGEDMV---LVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLID  415 (482)
Q Consensus       339 ~l~~~~~dg~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  415 (482)
                      +|++|+.|+.   |+                  +|++.++..+..+.......                  ..       
T Consensus       245 ~l~sgs~D~t~~~i~------------------lwd~~~g~~~~~l~~~~~~~------------------~~-------  281 (393)
T d1sq9a_         245 LLAIAHDSNSFGCIT------------------LYETEFGERIGSLSVPTHSS------------------QA-------  281 (393)
T ss_dssp             EEEEEEEETTEEEEE------------------EEETTTCCEEEEECBC-------------------------------
T ss_pred             eeeeecCCCCcceee------------------ecccccceeeeeeccccccc------------------cc-------
Confidence            9999999875   56                  67777775555443221111                  00       


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEEEEecCceeecC
Q psy8448         416 LYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                                            ..          .+.+|.+.|++++|+||+++|||||.||+|+||
T Consensus       282 ----------------------~~----------~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         282 ----------------------SL----------GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             ----------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             ----------------------ee----------eeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence                                  11          667999999999999999999999999999999

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3e-27  Score=214.90  Aligned_cols=262  Identities=11%  Similarity=0.090  Sum_probs=181.7

Q ss_pred             ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEe--ecccCCCeEEEEEccCC-CEEEEEECCCeEEEEeCC
Q psy8448         147 MLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKL--EKAHSLGVTCIQFSRDN-SQILTASFDTYVRIHGLK  223 (482)
Q Consensus       147 ~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~  223 (482)
                      .+|++.|++|+|+|++++|++|+.||+|++||+.++.....+  ...|..+|.+++|+|++ .+|++|+.|+.|++|++.
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            457899999999999999999999999999999765432222  13689999999999864 578999999999999999


Q ss_pred             CCceEEEeeccccc-eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeec-c--CCCccceeEEEEcCCCCCEEEEE
Q psy8448         224 SGKMLKEFRGHSSF-VNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKS-L--GASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       224 ~~~~~~~~~~~~~~-i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~--~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                      ..........+... .....+.++...+++++.++.+++||++.+........ .  ...........+.+.+ ..++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  166 (342)
T d1yfqa_          88 GSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-SRLIVG  166 (342)
T ss_dssp             SSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-SEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC-Cceeee
Confidence            88877766654444 34555667888999999999999999876443222211 1  1122334455666666 789999


Q ss_pred             eCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEE-cCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccce
Q psy8448         300 NKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTT-SPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVS  377 (482)
Q Consensus       300 ~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~-~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  377 (482)
                      +.|+.|++|++. ................+.+..+ ..++..+++++.||.+.+|++............. .+...    
T Consensus       167 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~-~~~~~----  241 (342)
T d1yfqa_         167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF-AFRCH----  241 (342)
T ss_dssp             ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE-EEECC----
T ss_pred             cCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc-eeeee----
Confidence            999999999983 2211111111111334455444 4567899999999999977654211111000000 00000    


Q ss_pred             eecccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccc
Q psy8448         378 LNTVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKL  457 (482)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  457 (482)
                                                   ..                             ..          ...+|...
T Consensus       242 -----------------------------~~-----------------------------~~----------~~~~~~~~  253 (342)
T d1yfqa_         242 -----------------------------RL-----------------------------NL----------KDTNLAYP  253 (342)
T ss_dssp             -----------------------------CC-----------------------------CT----------TCCSSCCC
T ss_pred             -----------------------------ee-----------------------------cc----------CCCccccc
Confidence                                         00                             11          44567888


Q ss_pred             eeeccccCCcceEEEEecCceeecC
Q psy8448         458 VIGLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       458 v~~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      |++++|+|++++||||+.||.|+||
T Consensus       254 v~~l~~sp~~~~lasg~~Dg~v~vW  278 (342)
T d1yfqa_         254 VNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             ceeEEecCCccEEEEECCCCEEEEE
Confidence            9999999999999999999999999

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.4e-26  Score=201.54  Aligned_cols=246  Identities=10%  Similarity=0.085  Sum_probs=193.0

Q ss_pred             ccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccc
Q psy8448          72 LFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      ..++.+.+|+....          ..+|+..|.++++++++ .+++++.|++|++|++.+.+               +..
T Consensus        28 s~Dg~v~~Wd~~~~----------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~---------------~~~   81 (287)
T d1pgua2          28 SYDGRIMEWSSSSM----------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE---------------FGS   81 (287)
T ss_dssp             ETTSCEEETTTTEE----------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE---------------CSS
T ss_pred             eCCCeEEEEECCCC----------CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc---------------ccc
Confidence            34778888886432          24899999999999765 57899999999999976432               124


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC-eEEEEeCCCCceEEE
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT-YVRIHGLKSGKMLKE  230 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~  230 (482)
                      .+.++++++++..++++ .++.+.+|+..+++....+.  ....+  .++++++..+++++.++ .+++|++...+....
T Consensus        82 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~  156 (287)
T d1pgua2          82 QPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR--LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD  156 (287)
T ss_dssp             CEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE--CSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred             ceeeeeeccCCceEEEe-ecccceeeeccceeeeeecc--cccee--eeeeccCcceeeeccccceeeeeeccccceeee
Confidence            57788899888766665 56678999999988887763  33333  45667788888888775 799999987766555


Q ss_pred             ee-ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCC---------CCEEEEEe
Q psy8448         231 FR-GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKN---------TEHFVVCN  300 (482)
Q Consensus       231 ~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~~l~~~~  300 (482)
                      +. .|...+++++|+|++.+|++++.||.|++||+.+++.....  ...|..+|.+++|+|.+         ..++++++
T Consensus       157 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs  234 (287)
T d1pgua2         157 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR--WAFRTSKINAISWKPAEKGANEEEIEEDLVATGS  234 (287)
T ss_dssp             CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC--SCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred             eeeccCCceeEEEeccCccccccccccccccceeeccccccccc--ccccccccceeeecccccccccccCCCCeeEeec
Confidence            54 47788999999999999999999999999999988765432  22788999999999854         36899999


Q ss_pred             CCCeEEEEEc-C-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEee
Q psy8448         301 KTNTVVIMNM-Q-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLI  354 (482)
Q Consensus       301 ~d~~i~i~d~-~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~  354 (482)
                      .|+.|++||+ + .+.+..+..|   ...|++++|+|++ .|++++.|+.|++|++
T Consensus       235 ~D~~i~iw~~~~~~~~~~~~~~h---~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         235 LDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCeEEEEeCCC---CCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9999999998 4 4455555443   7889999999986 6889999999998874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-25  Score=199.34  Aligned_cols=257  Identities=19%  Similarity=0.341  Sum_probs=198.9

Q ss_pred             CCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccc
Q psy8448          65 PPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQA  142 (482)
Q Consensus        65 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  142 (482)
                      ++|..++.  .++.+.+|+.....     ....+.+|++.|++++|  ++++|++|+.||.|++|++..+......... 
T Consensus        23 ~d~~~l~sgs~Dg~i~vWd~~~~~-----~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~-   94 (293)
T d1p22a2          23 YDDQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH-   94 (293)
T ss_dssp             CCSSEEEEEESSSCEEEEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC-
T ss_pred             EcCCEEEEEeCCCeEEEEECCCCc-----EEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccc-
Confidence            44554443  36778899875432     22344599999999987  5789999999999999999988766554433 


Q ss_pred             ccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeE--EeecccCCCeEEEEEccCCCEEEEEECCCeEEEE
Q psy8448         143 QDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLR--KLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIH  220 (482)
Q Consensus       143 ~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~  220 (482)
                               ......+.+....++++..++.+.+|+........  .....|...+..+.+.  ...+++++.|+.|++|
T Consensus        95 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~  163 (293)
T d1p22a2          95 ---------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVW  163 (293)
T ss_dssp             ---------CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred             ---------ccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeee
Confidence                     12233455566789999999999999987765322  2225677888877775  4578899999999999


Q ss_pred             eCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe
Q psy8448         221 GLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN  300 (482)
Q Consensus       221 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~  300 (482)
                      |+++++.+..+.++...+..+.++  +..+++++.||.|++||+++.+.+..+.   .+...+..+  .+++ .++++++
T Consensus       164 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~--~~~~-~~l~sg~  235 (293)
T d1p22a2         164 NTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCI--RFDN-KRIVSGA  235 (293)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEE--ECCS-SEEEEEE
T ss_pred             cCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeec---ccceeeeec--cccc-eEEEEEc
Confidence            999999999999999988888775  5689999999999999999998888776   666666654  4444 7899999


Q ss_pred             CCCeEEEEEcC----------CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         301 KTNTVVIMNMQ----------GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       301 ~d~~i~i~d~~----------~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      .||.|++||+.          ...+..+..|   ...|++++|+  +.+|++++.||.|++||
T Consensus       236 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H---~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEH---SGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCC---SSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CCCEEEEEECCCCccccccCCceeeEEecCC---CCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            99999999972          2345666554   6788999984  67899999999999875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=5.1e-27  Score=215.67  Aligned_cols=258  Identities=12%  Similarity=0.103  Sum_probs=190.0

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEecCCCceeeccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSVDG--FIEVWNFTTGKIRKDLKYQAQDNFMLMEE  151 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~  151 (482)
                      ++++.+|+.....     .  +..+|...|.+++|+|||++|++++.+.  .|++||+.+++....         ..|..
T Consensus        23 ~g~v~v~d~~~~~-----~--~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~---------~~~~~   86 (360)
T d1k32a3          23 RGQAFIQDVSGTY-----V--LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF---------EENLG   86 (360)
T ss_dssp             TTEEEEECTTSSB-----E--EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC---------CCCCC
T ss_pred             CCeEEEEECCCCc-----E--EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe---------eCCCc
Confidence            5666777654321     1  2237999999999999999998876543  799999998775432         23568


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE----------CCCeEEEEe
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS----------FDTYVRIHG  221 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----------~dg~i~i~d  221 (482)
                      .+.+++|+|++++|++++.++.+++|++.+++....+ ..+...+.+++|+|+|++|+.+.          .++.+++||
T Consensus        87 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d  165 (360)
T d1k32a3          87 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  165 (360)
T ss_dssp             SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             eEEeeeecccccccceeccccccccccccccceeeee-ecccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence            8999999999999999999999999999999888777 67888899999999999998654          345799999


Q ss_pred             CCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-------eeeec-------------------
Q psy8448         222 LKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECT-------STFKS-------------------  275 (482)
Q Consensus       222 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~-------------------  275 (482)
                      +.+++.... ..+...+..++|+|+|+.|++++.++.+.+||.......       ..+..                   
T Consensus       166 ~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  244 (360)
T d1k32a3         166 MEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA  244 (360)
T ss_dssp             TTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCC
T ss_pred             cccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccc
Confidence            988776544 446778899999999999999999999999987543221       11100                   


Q ss_pred             --------------cCCCccceeEEEEcCCCC------------CEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEE
Q psy8448         276 --------------LGASDIAVNSIHLLPKNT------------EHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       276 --------------~~~~~~~v~~i~~~~~~~------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~  329 (482)
                                    ..........+...+++.            .+++.++.++.+++||+..+.+..+      ...+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~------~~~v~  318 (360)
T d1k32a3         245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV------KNNLT  318 (360)
T ss_dssp             CCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE------EEEEE
T ss_pred             cceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe------cCCcC
Confidence                          000111222333333220            1233445678899999965544443      34588


Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEEeeh
Q psy8448         330 CCTTSPRGEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       330 ~~~~~~~g~~l~~~~~dg~i~iw~~~  355 (482)
                      +++|+|||++|++++.||.|++|+++
T Consensus       319 ~~~~SpDG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         319 DLRLSADRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEESS
T ss_pred             EEEECCCCCEEEEEECCCeEEEEECC
Confidence            99999999999999999999955543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.9e-25  Score=209.45  Aligned_cols=233  Identities=13%  Similarity=0.039  Sum_probs=164.8

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEe--EEee
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCL--RKLE  189 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~  189 (482)
                      .-++++.+.+|+|.|||..+++.+..+...         ..+..++|+|||+++++++.|+.+++||+.+++..  ..+.
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g---------~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~  102 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG---------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK  102 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECS---------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCC---------CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEe
Confidence            334588889999999999999998887654         35899999999999999999999999999887643  3332


Q ss_pred             --cccCCCeEEEEEccCCCEE-EEEECCCeEEEEeCCCCceEEEeecc-----------ccceeEEEEcCCCCEEE-EEe
Q psy8448         190 --KAHSLGVTCIQFSRDNSQI-LTASFDTYVRIHGLKSGKMLKEFRGH-----------SSFVNDITFTADGHSVL-SAS  254 (482)
Q Consensus       190 --~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~~l~-~~~  254 (482)
                        ..|...+.+.+|+|||++| +++..++.|++||..+++.+..+..+           ......+.++|++..++ +..
T Consensus       103 ~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence              2344455666778899986 67788999999999999988876543           34456788999988765 456


Q ss_pred             CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CcEEEEecCCc--ccCcCEEEE
Q psy8448         255 SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-GQIVRSLSSGK--REGGDFLCC  331 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~--~~~~~v~~~  331 (482)
                      .++.|.+||..+++.......  .+...+..++|+|++..+++++..++.+.++|.. ++....+....  .+.......
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~  260 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF  260 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred             cCCeEEEEEccCCCcceEEEE--cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccce
Confidence            679999999988775543321  3345678999999995455555667789999984 44444443321  122233344


Q ss_pred             EEcCCCCEEEEEe-CCcEEEEEeeh
Q psy8448         332 TTSPRGEWIYCVG-EDMVLVVRLIQ  355 (482)
Q Consensus       332 ~~~~~g~~l~~~~-~dg~i~iw~~~  355 (482)
                      .+...+...++.. .++.+.+|...
T Consensus       261 ~~~~~g~~~~~~~lg~~~v~~~~~~  285 (432)
T d1qksa2         261 VHPTFGPVWATSHMGDDSVALIGTD  285 (432)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             ecCCCCceecccccCCceEEecccc
Confidence            4444444443332 36667776554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.9e-23  Score=186.45  Aligned_cols=215  Identities=16%  Similarity=0.190  Sum_probs=166.6

Q ss_pred             EEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEeEEeecccCC
Q psy8448         116 ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA-SGSQSGKVKIWKIATGQCLRKLEKAHSL  194 (482)
Q Consensus       116 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~  194 (482)
                      ++++.|++|.+||+.+++.+.++...         ..+..++|+|+|++|+ +++.++.|.+||+.+++.+..+. .+ .
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g---------~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-~~-~   74 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG---------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-AG-S   74 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS---------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-CS-S
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC---------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-cc-c
Confidence            56778999999999999988877644         4578999999999875 56678999999999999988873 33 4


Q ss_pred             CeEEEEEccCCCEEEE-EECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeee
Q psy8448         195 GVTCIQFSRDNSQILT-ASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSA-SSDGTVKMWNLKTTECTST  272 (482)
Q Consensus       195 ~v~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~  272 (482)
                      .+..++|++++..+++ +..++.+.+|+..+++....+.. ...+.++.|+|+++.++.. ..++.+.+|+..+......
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeee
Confidence            5789999999987655 55677899999999988888774 4567899999999987654 4578899999999988887


Q ss_pred             eeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEE-EEecCCcccCcCEEEEEEcCCCCEEEEEeC---CcE
Q psy8448         273 FKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIV-RSLSSGKREGGDFLCCTTSPRGEWIYCVGE---DMV  348 (482)
Q Consensus       273 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~---dg~  348 (482)
                      +.    ....+..+.++|++..++++...++.+.+|+...... .....    ...+..+++++++..++.++.   ++.
T Consensus       154 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~  225 (301)
T d1l0qa2         154 VS----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNT  225 (301)
T ss_dssp             EE----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             cc----cCCCceEEEeeccccceeeecccccccccccccceeeeecccc----cCCcceeeccccccccccccccceeee
Confidence            74    3445788999999844444445557788888854443 44433    345678999999998876643   357


Q ss_pred             EE
Q psy8448         349 LV  350 (482)
Q Consensus       349 i~  350 (482)
                      |+
T Consensus       226 v~  227 (301)
T d1l0qa2         226 VS  227 (301)
T ss_dssp             EE
T ss_pred             ee
Confidence            88

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=7.2e-25  Score=206.01  Aligned_cols=196  Identities=11%  Similarity=0.045  Sum_probs=137.0

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEee--
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLE--  189 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--  189 (482)
                      +-++++.+.||+|+|||+.+++.+.++..+         ..+..++|+|||++|++++.|+.|++||+.+++......  
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g---------~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTG---------YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECC---------SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCC---------CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            335677889999999999999998877654         358899999999999999999999999999887543321  


Q ss_pred             --cccCCCeEEEEEccCCCEEEE-EECCCeEEEEeCCCCceEEEeecccccee-----------EEEEcCCCCEEEEEeC
Q psy8448         190 --KAHSLGVTCIQFSRDNSQILT-ASFDTYVRIHGLKSGKMLKEFRGHSSFVN-----------DITFTADGHSVLSASS  255 (482)
Q Consensus       190 --~~~~~~v~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-----------~l~~~~~~~~l~~~~~  255 (482)
                        ..|...+.+++|+|||+++++ +..++.+.+||..++++...+..|...+.           .+.+++++..++....
T Consensus       103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence              234455667778889998755 45789999999999998887776655444           4444555554444333


Q ss_pred             -CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448         256 -DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSL  318 (482)
Q Consensus       256 -dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~  318 (482)
                       .+.+.+++............  .+...+..+.++|++..++++...+..+.+++. +++.+...
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~  245 (426)
T d1hzua2         183 ETGKVLLVNYKDIDNLTVTSI--GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  245 (426)
T ss_dssp             TTTEEEEEECSSSSSCEEEEE--ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEEeccccceeeEEe--ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence             34455555444332221111  456678899999999555555556677888887 45444433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=3.5e-21  Score=171.60  Aligned_cols=253  Identities=17%  Similarity=0.189  Sum_probs=191.9

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLI-TGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      ++.+.+|+.....    ..+.+..  ...+..++|+|||++|+ +++.++.|++||+.+++.+..+...         ..
T Consensus        11 ~~~v~v~D~~t~~----~~~~i~~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~---------~~   75 (301)
T d1l0qa2          11 SDNISVIDVTSNK----VTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---------SS   75 (301)
T ss_dssp             TTEEEEEETTTTE----EEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---------SS
T ss_pred             CCEEEEEECCCCe----EEEEEEC--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc---------cc
Confidence            4557777765442    3334433  34678999999999874 6668899999999999887766543         35


Q ss_pred             EEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEE-EECCCeEEEEeCCCCceEEE
Q psy8448         153 VMSLAYSRDSEMLASG-SQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILT-ASFDTYVRIHGLKSGKMLKE  230 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~  230 (482)
                      +..++|++++..++++ ..++.+.+|+..+++....+.  +.....++.|+|++..++. +..++.+.+|+..+.+....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccccccccccccccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccceeee
Confidence            7889999999866654 567789999999998888773  4556889999999988764 55678899999999998888


Q ss_pred             eeccccceeEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEe--CCCeEEE
Q psy8448         231 FRGHSSFVNDITFTADGHSVLSASSD-GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCN--KTNTVVI  307 (482)
Q Consensus       231 ~~~~~~~i~~l~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~--~d~~i~i  307 (482)
                      +..+ ..+..+.++|++..+++++.+ +.+.+|+....+......    .......+++++++..+++++.  .++.|.+
T Consensus       154 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v  228 (301)
T d1l0qa2         154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM  228 (301)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred             cccC-CCceEEEeeccccceeeecccccccccccccceeeeeccc----ccCCcceeeccccccccccccccceeeeeee
Confidence            7744 457899999999988888765 567788877776666653    3445678999999954444433  3478999


Q ss_pred             EEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEE-EEEeCCcEEEEE
Q psy8448         308 MNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWI-YCVGEDMVLVVR  352 (482)
Q Consensus       308 ~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l-~~~~~dg~i~iw  352 (482)
                      ||. +++.+..+..    ...+.+++|+|||++| ++++.|+.|++|
T Consensus       229 ~D~~t~~~~~~~~~----~~~~~~va~spdg~~l~va~~~~~~i~v~  271 (301)
T d1l0qa2         229 IDTGTNKITARIPV----GPDPAGIAVTPDGKKVYVALSFCNTVSVI  271 (301)
T ss_dssp             EETTTTEEEEEEEC----CSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eecCCCeEEEEEcC----CCCEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            999 5777666654    3457899999999987 467789999943

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=2e-22  Score=182.71  Aligned_cols=264  Identities=9%  Similarity=0.047  Sum_probs=189.8

Q ss_pred             CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEeEEeecc
Q psy8448         113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLA-SGSQSGKVKIWKIATGQCLRKLEKA  191 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~  191 (482)
                      +++++++.|++|+|||+.+++.+..+..+..      ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+...
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~------~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADA------GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTC------TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCC------CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            5899999999999999999998887765432      34578899999999875 5668899999999999988877422


Q ss_pred             c----CCCeEEEEEccCCCEEEEEE------------CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeC
Q psy8448         192 H----SLGVTCIQFSRDNSQILTAS------------FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASS  255 (482)
Q Consensus       192 ~----~~~v~~i~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~  255 (482)
                      .    ...+..++|+|++++++++.            .+..+.+||..+++....+.. ...+.+++|+|+++++++++.
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC
Confidence            1    22345789999999998776            357899999999998888774 456889999999999998864


Q ss_pred             CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCC-----------------------CEEEEEeCCCeEEEEEc-C
Q psy8448         256 DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNT-----------------------EHFVVCNKTNTVVIMNM-Q  311 (482)
Q Consensus       256 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-----------------------~~l~~~~~d~~i~i~d~-~  311 (482)
                        .+.+||..+++....+.....    .....+.|++.                       ........++.+.+|+. .
T Consensus       155 --~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (337)
T d1pbyb_         155 --DLHVMDPEAGTLVEDKPIQSW----EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             --SEEEEETTTTEEEEEECSTTT----TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             --CcceeeeecCcEEEEeecCCc----cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC
Confidence              478899999887766642111    01111111110                       01111122346888888 4


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccceecc
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGFIADI  391 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (482)
                      +.........  +...+..++++|++.+++.+  ++.++                  +|+..++.               
T Consensus       229 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~i~------------------v~d~~~~~---------------  271 (337)
T d1pbyb_         229 GEMAMREVRI--MDVFYFSTAVNPAKTRAFGA--YNVLE------------------SFDLEKNA---------------  271 (337)
T ss_dssp             CCEEEEEEEE--CSSCEEEEEECTTSSEEEEE--ESEEE------------------EEETTTTE---------------
T ss_pred             CcEEEEEecC--CCcceEEEEecccceEEEEc--cccEE------------------EEECCCCc---------------
Confidence            4443332221  25667889999999998766  47888                  66666661               


Q ss_pred             CCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceecccceeeccccCCcceEE
Q psy8448         392 NNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVIGLTHHPHQNLLG  471 (482)
Q Consensus       392 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  471 (482)
                                      +                             ..          .+ .+...+.+++|+|||++|+
T Consensus       272 ----------------~-----------------------------~~----------~~-~~~~~~~~~~~s~dG~~l~  295 (337)
T d1pbyb_         272 ----------------S-----------------------------IK----------RV-PLPHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             ----------------E-----------------------------EE----------EE-ECSSCCCEEEECTTSCEEE
T ss_pred             ----------------E-----------------------------EE----------EE-cCCCCEEEEEECCCCCEEE
Confidence                            1                             11          11 3455688999999999999


Q ss_pred             EEecCceeecC
Q psy8448         472 TYSEDGLLRFS  482 (482)
Q Consensus       472 s~~~Dg~i~iW  482 (482)
                      +++.||+|+||
T Consensus       296 v~~~~~~i~v~  306 (337)
T d1pbyb_         296 LGGALGDLAAY  306 (337)
T ss_dssp             EESBSSEEEEE
T ss_pred             EEeCCCcEEEE
Confidence            99999999998

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=1.5e-22  Score=184.37  Aligned_cols=271  Identities=10%  Similarity=0.004  Sum_probs=190.2

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCeE
Q psy8448         106 ARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS-GSQSGKVKIWKIATGQC  184 (482)
Q Consensus       106 ~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~  184 (482)
                      ++|++++++|++++.+++|.+||+.+++.+.++....       ...+.+++|+|||+++++ ++.++.|.+||+.+++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~-------~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-------KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-------CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC-------CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee
Confidence            4789999999999999999999999999887776542       346789999999998755 45789999999999998


Q ss_pred             eEEeecccC-----CCeEEEEEccCCCEEEEEE------------CCCeEEEEeCCCCceEEEeecc--ccceeEEEEcC
Q psy8448         185 LRKLEKAHS-----LGVTCIQFSRDNSQILTAS------------FDTYVRIHGLKSGKMLKEFRGH--SSFVNDITFTA  245 (482)
Q Consensus       185 ~~~~~~~~~-----~~v~~i~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~--~~~i~~l~~~~  245 (482)
                      +..+.....     ..+..++|+|||++++++.            .++.+.+||..+++....+..+  ...+..+.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            877643221     2356789999999988765            4678899998887765544322  34466677788


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCC-------------------------EEEEEe
Q psy8448         246 DGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTE-------------------------HFVVCN  300 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-------------------------~l~~~~  300 (482)
                      ++..++.   ++.+.+|++.+++....+..    ......+.++|++..                         .+.++.
T Consensus       155 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
T d1jmxb_         155 DGSLYVA---GPDIYKMDVKTGKYTVALPL----RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  227 (346)
T ss_dssp             TSCEEEE---SSSEEEECTTTCCEEEEECS----TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             CCEEEEe---CCcceEEEccCCCEEEEEec----CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeecc
Confidence            8776554   25689999999888777642    122233334444322                         222333


Q ss_pred             CCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceee
Q psy8448         301 KTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLN  379 (482)
Q Consensus       301 ~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (482)
                      .+..+.+|+. .+.........  +...+..+.+++++.+++.... +.+.                  +|+..+++   
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~v~------------------v~d~~~~~---  283 (346)
T d1jmxb_         228 LLYGYLSVDLKTGKTHTQEFAD--LTELYFTGLRSPKDPNQIYGVL-NRLA------------------KYDLKQRK---  283 (346)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEE--CSSCEEEEEECSSCTTEEEEEE-SEEE------------------EEETTTTE---
T ss_pred             CCceEEEEECCCCceEEEEeec--ccceeEEEEEeCCCCEEEEecC-CeEE------------------EEECCCCc---
Confidence            4456777777 34433332221  2566788899999888877664 5677                  66666651   


Q ss_pred             cccccccceeccCCCcccchhccccccCCCchhhhhhhHHHHHHHHHHHhhhhhhhhccccCcccccccCcceeccccee
Q psy8448         380 TVDSVDGFIADINNGHWDTVLKSVQSLKLPEKKLIDLYEQVVLELIELRELGAARSLLRQTDPMIFMKQHEPEVHEKLVI  459 (482)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  459 (482)
                                                  +                             ..          .+ .+...+.
T Consensus       284 ----------------------------~-----------------------------~~----------~~-~~~~~~~  295 (346)
T d1jmxb_         284 ----------------------------L-----------------------------IK----------AA-NLDHTYY  295 (346)
T ss_dssp             ----------------------------E-----------------------------EE----------EE-ECSSCCC
T ss_pred             ----------------------------E-----------------------------EE----------EE-cCCCCEE
Confidence                                        1                             11          11 2344688


Q ss_pred             eccccCCcceEEEEecCceeecC
Q psy8448         460 GLTHHPHQNLLGTYSEDGLLRFS  482 (482)
Q Consensus       460 ~~~~sp~~~~l~s~~~Dg~i~iW  482 (482)
                      +++|+|||++|++++.||.|+||
T Consensus       296 ~va~s~DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         296 CVAFDKKGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             EEEECSSSSCEEEESBSSEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEE
Confidence            99999999999999999999998

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.2e-21  Score=183.80  Aligned_cols=183  Identities=11%  Similarity=0.073  Sum_probs=129.9

Q ss_pred             EEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE--e---eccccce
Q psy8448         164 MLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE--F---RGHSSFV  238 (482)
Q Consensus       164 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~---~~~~~~i  238 (482)
                      ++++.+.||.|++||+.+++.+..+. .+ ..+..++|+|||+++++++.|+.|++||+.+++....  +   .+|.+.+
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~-~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVID-TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEE-CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            55777889999999999999999984 34 4689999999999999999999999999998875432  2   2466667


Q ss_pred             eEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeccCCCccce-----------eEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         239 NDITFTADGHSVLSA-SSDGTVKMWNLKTTECTSTFKSLGASDIAV-----------NSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       239 ~~l~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v-----------~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                      .+++|+|||++++++ ..++.+.+||..++++...+.   .+...+           ..+..++++..++.+....+.+.
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~  188 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS---TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL  188 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE---CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee---ccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            778888999987555 578999999999998877665   333333           44455555533333333344555


Q ss_pred             EEEcC-Cc--EEEEecCCcccCcCEEEEEEcCCCCEEEEEeC-CcEEEEEeeh
Q psy8448         307 IMNMQ-GQ--IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE-DMVLVVRLIQ  355 (482)
Q Consensus       307 i~d~~-~~--~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~-dg~i~iw~~~  355 (482)
                      +++.. ..  .+....    ....+..++|+|++++++++.. +..+.+++..
T Consensus       189 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~  237 (426)
T d1hzua2         189 LVNYKDIDNLTVTSIG----AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK  237 (426)
T ss_dssp             EEECSSSSSCEEEEEE----CCSSEEEEEECTTSCEEEEEETTCSEEEEEETT
T ss_pred             EEEeccccceeeEEec----cCCccEeeeECCCCcEEEeeeecccceeeeecc
Confidence            55442 21  122222    2556789999999999887764 5566755443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.1e-20  Score=170.99  Aligned_cols=259  Identities=14%  Similarity=0.127  Sum_probs=184.3

Q ss_pred             cCCccccccccccccccccceeeec-CCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeecccccccccccccc
Q psy8448          73 FRGKAAMKDQEEEKYPTQLSKQIKF-GSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLME  150 (482)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~  150 (482)
                      .++.+.+|+......    ...+.. .+...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+......   .+.
T Consensus         9 ~d~~v~v~D~~s~~~----~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~---~~~   81 (337)
T d1pbyb_           9 RPDKLVVIDTEKMAV----DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE---ERV   81 (337)
T ss_dssp             TTTEEEEEETTTTEE----EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---EEE
T ss_pred             CCCEEEEEECCCCeE----EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc---ccc
Confidence            357788888765432    223332 344568899999999987 56678999999999999988766554321   123


Q ss_pred             ccEEEEEEcCCCCEEEEEe------------CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEE
Q psy8448         151 EAVMSLAYSRDSEMLASGS------------QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVR  218 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~  218 (482)
                      ..+..++|+|++++++++.            .+..+.+||..+++....+.  +...+..++|+|+|+++++++.  .+.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~--~~~  157 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGLGR--DLH  157 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEESS--SEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcCCCCEEEEEcC--Ccc
Confidence            4466899999999998876            35789999999999888873  4566889999999999998864  477


Q ss_pred             EEeCCCCceEEEeeccccceeEEEEcCCCC------------------------EEEEEeCCCcEEEEECCCCceeeeee
Q psy8448         219 IHGLKSGKMLKEFRGHSSFVNDITFTADGH------------------------SVLSASSDGTVKMWNLKTTECTSTFK  274 (482)
Q Consensus       219 i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~  274 (482)
                      +||..+++....+..+... ....+.|++.                        ....+..++.+.+||..++.......
T Consensus       158 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         158 VMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             eeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            8999999887776533221 1111222111                        11112224468899998887554322


Q ss_pred             ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8448         275 SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLVVR  352 (482)
Q Consensus       275 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~iw  352 (482)
                      .  .+...+..+.++|++ ..++.+  ++.|++||+ +++.+..+..    ...+.+++|+|||++|++++.|+.|++|
T Consensus       237 ~--~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~  306 (337)
T d1pbyb_         237 R--IMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             E--ECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             c--CCCcceEEEEecccc-eEEEEc--cccEEEEECCCCcEEEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            1  556677888999987 555554  588999999 5777776654    4567899999999999999999999933

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.2e-20  Score=176.55  Aligned_cols=190  Identities=12%  Similarity=0.047  Sum_probs=145.8

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce--EEEe---ecc
Q psy8448         160 RDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM--LKEF---RGH  234 (482)
Q Consensus       160 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~---~~~  234 (482)
                      ++.-++++.+.+|.|.+||..+++.+..+. .+ ..+..++|+|||+++++++.|+.|.+||+.+++.  ...+   ..|
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~-~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYEIKTVLD-TG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEE-CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            333346888899999999999999999995 33 4699999999999999999999999999988763  2333   345


Q ss_pred             ccceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeeeeccC--------CCccceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         235 SSFVNDITFTADGHSV-LSASSDGTVKMWNLKTTECTSTFKSLG--------ASDIAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       235 ~~~i~~l~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                      .+.+.+..|+|||++| +++..++.|++||..+++.+..+....        .+......+.++|++..++++...++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            5666677788999986 677789999999999999887765211        2344566789999996667778888999


Q ss_pred             EEEEc-CCcEEE--EecCCcccCcCEEEEEEcCCCCEEEEEeCC-cEEEEEeeh
Q psy8448         306 VIMNM-QGQIVR--SLSSGKREGGDFLCCTTSPRGEWIYCVGED-MVLVVRLIQ  355 (482)
Q Consensus       306 ~i~d~-~~~~~~--~~~~~~~~~~~v~~~~~~~~g~~l~~~~~d-g~i~iw~~~  355 (482)
                      .+|+. +.+...  .+..    ...+..++|+|+|+++++++.+ +.+.+++..
T Consensus       188 ~~~d~~~~~~~~~~~i~~----g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISA----ERFLHDGGLDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             EEEETTCSSEEEEEEEEC----CSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             EEEEccCCCcceEEEEcc----cCccccceECCCCCEEEEeccccceEEEeecc
Confidence            99998 444333  3332    3457899999999988877654 567766654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.3e-19  Score=159.70  Aligned_cols=234  Identities=13%  Similarity=0.151  Sum_probs=159.3

Q ss_pred             EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEe--ec
Q psy8448         114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKL--EK  190 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~--~~  190 (482)
                      .+++++.|++|++|++++...+..+...      .|...+..|+|+|||++|++++ .|+.|++|++........+  ..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~------~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE------cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence            4577789999999999865433322211      2457899999999999996665 5899999999765433222  12


Q ss_pred             ccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCceEEE--eeccccceeEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q psy8448         191 AHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKMLKE--FRGHSSFVNDITFTADGHSVLSASS-DGTVKMWNLKT  266 (482)
Q Consensus       191 ~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~~  266 (482)
                      .+...+..++|+|+|++|++++. ++.|.+|+.........  ...+...+.++.++|+++++++++. +..|.+|+...
T Consensus        80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            34456778999999999998875 66899998876654433  3346667889999999999888775 45699999876


Q ss_pred             Cceeeeee---ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--Cc---EEEEe---cCCcccCcCEEEEEEcC
Q psy8448         267 TECTSTFK---SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--GQ---IVRSL---SSGKREGGDFLCCTTSP  335 (482)
Q Consensus       267 ~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~---~~~~~---~~~~~~~~~v~~~~~~~  335 (482)
                      ........   ...........++|++++...+.+....+...+++..  ..   .....   ............+++++
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  239 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  239 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec
Confidence            54322211   1113344567899999985555556677788888863  11   11122   12222345567789999


Q ss_pred             CCCEEEEE-eCCcEEEEEe
Q psy8448         336 RGEWIYCV-GEDMVLVVRL  353 (482)
Q Consensus       336 ~g~~l~~~-~~dg~i~iw~  353 (482)
                      ++++++.. ..++.+.+|+
T Consensus       240 d~~~~~~~~~~~~~~~~~~  258 (333)
T d1ri6a_         240 DGRHLYACDRTASLITVFS  258 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEE
T ss_pred             ccCceeeecccCCeEEEEE
Confidence            99987755 4567888553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.85  E-value=1.5e-18  Score=159.57  Aligned_cols=199  Identities=10%  Similarity=-0.019  Sum_probs=143.5

Q ss_pred             CCCCcEEEEEEcCCCCEEEEE-----eCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC--
Q psy8448          98 GSKSHVECARFSPDGQYLITG-----SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ--  170 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~--  170 (482)
                      .+..++.+++++|||+.++..     +.++.|.+||..+++.+..+...          ....++|+|||++|++++.  
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~----------~~~~~a~SpDG~~l~va~~~~   87 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG----------FLPNPVAAHSGSEFALASTSF   87 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC----------CCccEEEcCCCCEEEEEeecC
Confidence            678899999999999998764     23467999999999988766533          2236899999999998753  


Q ss_pred             --------CCcEEEEEcCCCeEeEEeecccCCC-------eEEEEEccCCCEEEEEE--CCCeEEEEeCCCCceEEEeec
Q psy8448         171 --------SGKVKIWKIATGQCLRKLEKAHSLG-------VTCIQFSRDNSQILTAS--FDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       171 --------dg~i~iwd~~~~~~~~~~~~~~~~~-------v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~  233 (482)
                              ++.|.+||..+++....+. .+...       ...+.|+++++.+++..  .++.+.+|+....+.....  
T Consensus        88 ~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~--  164 (373)
T d2madh_          88 SRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL--  164 (373)
T ss_pred             CcccccccceEEEEEECCCCcEEEEEe-cCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe--
Confidence                    5789999999999887763 33322       24578888888766554  4567888988777654433  


Q ss_pred             cccceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeeeeeccC---CCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         234 HSSFVNDITFTADGHSV-LSASSDGTVKMWNLKTTECTSTFKSLG---ASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       234 ~~~~i~~l~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                        ....++.++|+++.+ ++.+.|+.+.+|+...++.........   ........+.+.++  ..++..+.++.+.+|+
T Consensus       165 --~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~  240 (373)
T d2madh_         165 --SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS--GRIVWPVYSGKILQAD  240 (373)
T ss_pred             --ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC--ceEEEecCCceEEEEE
Confidence              345688999998755 678889999999999887665543211   11222333444444  4667777889999999


Q ss_pred             cCCc
Q psy8448         310 MQGQ  313 (482)
Q Consensus       310 ~~~~  313 (482)
                      ....
T Consensus       241 ~~~~  244 (373)
T d2madh_         241 ISAA  244 (373)
T ss_pred             cCCC
Confidence            8543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.2e-18  Score=155.54  Aligned_cols=273  Identities=12%  Similarity=0.180  Sum_probs=181.9

Q ss_pred             CCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceeecccccccccccccccc
Q psy8448          74 RGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEA  152 (482)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~  152 (482)
                      ++.+.+|+.....- ....+.  ..|.+.|.+|+|||||++|++++ .|+.|++|++..............     +...
T Consensus        13 ~~~I~v~~~~~~~~-l~~~~~--~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-----~~~~   84 (333)
T d1ri6a_          13 SQQIHVWNLNHEGA-LTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-----LPGS   84 (333)
T ss_dssp             GTEEEEEEECTTSC-EEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-----CSSC
T ss_pred             CCcEEEEEEcCCCC-eEEEEE--EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc-----cCCC
Confidence            55667777653321 122222  36788999999999999996555 589999999987654332222211     2345


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEeEEee-cccCCCeEEEEEccCCCEEEEEECC-CeEEEEeCCCCceEE
Q psy8448         153 VMSLAYSRDSEMLASGSQ-SGKVKIWKIATGQCLRKLE-KAHSLGVTCIQFSRDNSQILTASFD-TYVRIHGLKSGKMLK  229 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~  229 (482)
                      +..++|+|+|++|++++. ++.+.+|+........... ..+...+.++.++|+++++++++.+ ..|.+|+........
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            778999999999999875 6789999987765544332 3456678899999999988877644 579999987654332


Q ss_pred             Ee------eccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCce----eeeeec---cCCCccceeEEEEcCCCCCE
Q psy8448         230 EF------RGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTEC----TSTFKS---LGASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       230 ~~------~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~----~~~~~~---~~~~~~~v~~i~~~~~~~~~  295 (482)
                      ..      .........++|++++..++... ..+...+++......    ......   ..........+++++++..+
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence            21      12345568899999998887665 456678888654321    111111   11233456778899999666


Q ss_pred             EEEEeCCCeEEEEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe-CCcEEEEEee
Q psy8448         296 FVVCNKTNTVVIMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-EDMVLVVRLI  354 (482)
Q Consensus       296 l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~dg~i~iw~~  354 (482)
                      ++++..++.+.+|++. ................+..++|+|||++|++++ .++.|.+|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            6677788899999983 222222222212244567899999999988765 4689997754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=5.9e-19  Score=160.12  Aligned_cols=289  Identities=13%  Similarity=0.090  Sum_probs=196.7

Q ss_pred             CCCCCceeec--cCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeeccc
Q psy8448          63 LLPPGTTIDL--FRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYL-ITGSVDGFIEVWNFTTGKIRKDLK  139 (482)
Q Consensus        63 ~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~  139 (482)
                      +.+.+..+..  .++.+.+|+....    ++...+...|...+.+++|+|||+++ +++..++.|++||+.+++....+.
T Consensus         4 ~~~~~~~l~~~~~~~~v~v~D~~t~----~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPNNLHVVDVASD----TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTT----EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCCCcEEEEEcCCCEEEEEECCCC----CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            3445554443  3567778887644    33444445677788999999999987 455678999999999998876654


Q ss_pred             cccccccccccccEEEEEEcCCCCEEEEEe------------CCCcEEEEEcCCCeEeEEeec-ccCCCeEEEEEccCCC
Q psy8448         140 YQAQDNFMLMEEAVMSLAYSRDSEMLASGS------------QSGKVKIWKIATGQCLRKLEK-AHSLGVTCIQFSRDNS  206 (482)
Q Consensus       140 ~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~~~~  206 (482)
                      ....  ...+...+..++|+|||+++++++            .++.+.+|+..+++....+.. .....+..+.+++++.
T Consensus        80 ~~~~--~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          80 LSSV--PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS  157 (346)
T ss_dssp             SCCS--TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred             cccc--ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence            3321  112234567899999999988775            467889999887765443321 1234466677777776


Q ss_pred             EEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE--------------------------EEEEeCCCcEE
Q psy8448         207 QILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS--------------------------VLSASSDGTVK  260 (482)
Q Consensus       207 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~--------------------------l~~~~~dg~i~  260 (482)
                      .++.   ++.+.+|++.+++.+..+..+. ....+.++|++..                          +.++..++.+.
T Consensus       158 ~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (346)
T d1jmxb_         158 LYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  233 (346)
T ss_dssp             EEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             EEEe---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence            5543   3568999999998887775432 2233334443332                          23334455688


Q ss_pred             EEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCCE
Q psy8448         261 MWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEW  339 (482)
Q Consensus       261 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~  339 (482)
                      +||+.++........  .+...+..+.+++++.. ++... ++.+.+||. .++.+..+..    ...+.+++|+|||++
T Consensus       234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~~~~~~~~~----~~~~~~va~s~DG~~  305 (346)
T d1jmxb_         234 SVDLKTGKTHTQEFA--DLTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDK  305 (346)
T ss_dssp             EEETTTCCEEEEEEE--ECSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSC
T ss_pred             EEECCCCceEEEEee--cccceeEEEEEeCCCCE-EEEec-CCeEEEEECCCCcEEEEEcC----CCCEEEEEEcCCCCE
Confidence            889888775544322  55667888999998844 44433 467999999 6777776654    345789999999999


Q ss_pred             EEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeecccccccc
Q psy8448         340 IYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVDSVDGF  387 (482)
Q Consensus       340 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (482)
                      |++++.|+.|+                  +||..+++.+.++.-+.+.
T Consensus       306 l~v~~~d~~v~------------------v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         306 LYLGGTFNDLA------------------VFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             EEEESBSSEEE------------------EEETTTTEEEEEEECSSSC
T ss_pred             EEEEeCCCcEE------------------EEECccCCEEEEEECCCCC
Confidence            99999999999                  7777777777777655544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=5.1e-18  Score=154.67  Aligned_cols=222  Identities=12%  Similarity=0.065  Sum_probs=143.2

Q ss_pred             EEEcCCCCEEEEEe-----CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe----------C
Q psy8448         106 ARFSPDGQYLITGS-----VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS----------Q  170 (482)
Q Consensus       106 ~~~s~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~----------~  170 (482)
                      .+.+||++.++...     .++.|.+||..+++.+.++...          ....++|+|||++|++.+          .
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g----------~~~~~a~SpDg~~l~v~~~~~~~~~~g~~   76 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG----------FLPNPVVADDGSFIAHASTVFSRIARGER   76 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC----------SSCEEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC----------CCCceEEcCCCCEEEEEeCCCccccccCC
Confidence            35689999987653     4567999999999987766533          233689999999888653          4


Q ss_pred             CCcEEEEEcCCCeEeEEeeccc------CCCeEEEEEccCCCEEEEEE--CCCeEEEEeCCCCceEEEeecccc------
Q psy8448         171 SGKVKIWKIATGQCLRKLEKAH------SLGVTCIQFSRDNSQILTAS--FDTYVRIHGLKSGKMLKEFRGHSS------  236 (482)
Q Consensus       171 dg~i~iwd~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~------  236 (482)
                      |+.|++||+.+++....+....      ......++|+|++++++++.  .+..+.+|+..+++.+..+..+..      
T Consensus        77 d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d2bbkh_          77 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT  156 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec
Confidence            7899999999998887763211      12235689999999988775  456899999999998877764332      


Q ss_pred             -ceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcE
Q psy8448         237 -FVNDITFTADGHSVLSAS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQI  314 (482)
Q Consensus       237 -~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~  314 (482)
                       ....+.+++++..++... .++.+.+++......        .+...+....+.+++ ..++.++.++.+++|++.+..
T Consensus       157 ~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP--------EDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC--------TTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSS
T ss_pred             CCcceEEEcCCCCEEEEEecCCCeEEEEecccccc--------eecceeeeccccCCC-CeEEEecCCCeEEEEecCCCc
Confidence             223345555555444332 233344444333221        233345556677776 678888999999999995443


Q ss_pred             EEEecCCcccC----------cCEEEEEEcCCCCEEEEEeCC
Q psy8448         315 VRSLSSGKREG----------GDFLCCTTSPRGEWIYCVGED  346 (482)
Q Consensus       315 ~~~~~~~~~~~----------~~v~~~~~~~~g~~l~~~~~d  346 (482)
                      ...+.....+.          .....+++++++..++....+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~  269 (355)
T d2bbkh_         228 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ  269 (355)
T ss_dssp             CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEecc
Confidence            33322211101          112346677777776655433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.74  E-value=1.4e-15  Score=137.98  Aligned_cols=235  Identities=9%  Similarity=0.002  Sum_probs=162.3

Q ss_pred             EEEEeCCCeEEEEecCCCceeecccccccc----------------------ccccccccEEEEEEcCCCCEEEEEe-CC
Q psy8448         115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQD----------------------NFMLMEEAVMSLAYSRDSEMLASGS-QS  171 (482)
Q Consensus       115 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----------------------~~~~h~~~i~~l~~~~~~~~l~~~~-~d  171 (482)
                      +++|+.+|.|++|++.+++.+.++..-...                      ....|.-.......+|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            567788999999999999887765431110                      0111333455566689999997765 67


Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCC--EEEEEECCC-----------------eEEEEeCCCCceEEEee
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNS--QILTASFDT-----------------YVRIHGLKSGKMLKEFR  232 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~dg-----------------~i~i~d~~~~~~~~~~~  232 (482)
                      ..|.++|+.+++....+..++......++|+|+++  +++..+.+.                 .+..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            89999999999988877666778899999999987  444444332                 24568888888777766


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCC-----------------------------------------CcEEEEECCCCceee
Q psy8448         233 GHSSFVNDITFTADGHSVLSASSD-----------------------------------------GTVKMWNLKTTECTS  271 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~~d-----------------------------------------g~i~i~d~~~~~~~~  271 (482)
                      . .+.+..+.++|+|+++++++.+                                         +.+.+++....+.+.
T Consensus       174 v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             c-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            4 3457889999999999887643                                         233444444444444


Q ss_pred             eeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-------c-----EEEEecCCcccCcCEEEEEEcCCCCE
Q psy8448         272 TFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG-------Q-----IVRSLSSGKREGGDFLCCTTSPRGEW  339 (482)
Q Consensus       272 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-------~-----~~~~~~~~~~~~~~v~~~~~~~~g~~  339 (482)
                      .+.   . ......+.++|+|..+++++..++++.+||+..       +     .+....   ...-.....+|+++|..
T Consensus       253 ~IP---v-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~---~~glgplh~~fd~~g~~  325 (441)
T d1qnia2         253 YIP---V-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP---ELGLGPLHTTFDGRGNA  325 (441)
T ss_dssp             EEC---C-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC---BCCSCEEEEEECSSSEE
T ss_pred             EEe---C-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec---ccccCcccceecCCceE
Confidence            443   2 223567999999965667788899999999731       1     111111   11223456799999988


Q ss_pred             EEEEeCCcEEEEEeehhh
Q psy8448         340 IYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       340 l~~~~~dg~i~iw~~~~~  357 (482)
                      +.+..-|..|..|++...
T Consensus       326 yts~~~ds~v~kw~~~~~  343 (441)
T d1qnia2         326 YTTLFIDSQVCKWNIADA  343 (441)
T ss_dssp             EEEETTTTEEEEEEHHHH
T ss_pred             EEcccccceEEEeccchh
Confidence            888999999998877543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=7.2e-15  Score=134.45  Aligned_cols=249  Identities=12%  Similarity=0.036  Sum_probs=168.9

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe--CCC
Q psy8448         105 CARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS--QSG  172 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~--~dg  172 (482)
                      .++|+|||++|++++          .++.|.+||..+++....+..+....... ......+.|+++++.++...  .++
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV-GPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEe-ccCCCcEEEEeCCCcEEEEEEcCCC
Confidence            689999999998875          45789999999999877665443211111 11235678999998776654  456


Q ss_pred             cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEE-EEEECCCeEEEEeCCCCceEEEeecc------ccceeEEEEcC
Q psy8448         173 KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQI-LTASFDTYVRIHGLKSGKMLKEFRGH------SSFVNDITFTA  245 (482)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~l~~~~  245 (482)
                      .+.+|+....+.....     ....++.++|+++.+ ++.+.|+.+.+|+...++.......+      ......+.+.+
T Consensus       149 ~~~~~~~~~~~~~~~~-----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (373)
T d2madh_         149 AVGLVVQGGSSDDQLL-----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             ceEEeeccCCeEEEEe-----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC
Confidence            8899998877655443     345688999988755 67888999999999988776655432      22234455666


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeecc---------CCCccceeEEEEcCCCC---------CEEEEEeCCCeEEE
Q psy8448         246 DGHSVLSASSDGTVKMWNLKTTECTSTFKSL---------GASDIAVNSIHLLPKNT---------EHFVVCNKTNTVVI  307 (482)
Q Consensus       246 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~v~~i~~~~~~~---------~~l~~~~~d~~i~i  307 (482)
                      ++. ++..+.++.+.+|+.............         .........+++++++.         ..++....++.+.+
T Consensus       224 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         224 SGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             Cce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence            554 556667889999998876533222100         01112233455555552         23345566778999


Q ss_pred             EEc-CCcEEEEecCCcccCcCEEEEEEcCCCCE--EEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccc
Q psy8448         308 MNM-QGQIVRSLSSGKREGGDFLCCTTSPRGEW--IYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVD  382 (482)
Q Consensus       308 ~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (482)
                      ||. +++.+..+..    ...+..++|+|||+.  +++++.|+.|+                  +||..+|+.+.++.
T Consensus       303 ~d~~t~~~~~~~~~----~~~~~~~a~spDG~~~l~vt~~~d~~v~------------------v~D~~tg~~~~~~~  358 (373)
T d2madh_         303 VTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLH------------------IYDAGAGDQDQSTV  358 (373)
T ss_pred             EECCCCcEEEEecC----CCCeeEEEECCCCCEEEEEEeCCCCeEE------------------EEECCCCCEEEEEC
Confidence            999 6777777654    456789999999984  46789999999                  77888886555554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.9e-15  Score=137.37  Aligned_cols=251  Identities=14%  Similarity=0.150  Sum_probs=161.9

Q ss_pred             EEEEEcCCCCEEEEE----------eCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe--CC
Q psy8448         104 ECARFSPDGQYLITG----------SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS--QS  171 (482)
Q Consensus       104 ~~~~~s~~~~~l~s~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~--~d  171 (482)
                      ..++|||||++|++.          ..|+.|++||+.+++....+........ ........++|+|++++++++.  .+
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF-LVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC-CBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee-ecCCCCceEEEecCCCeeEEecCCCC
Confidence            368999999988764          3478999999999998776654432211 1122345688999999888775  45


Q ss_pred             CcEEEEEcCCCeEeEEeecccC------CCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeeccccceeEEEEc
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHS------LGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFT  244 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~------~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~  244 (482)
                      ..+.+|+..+++.+..+.....      .....+.++++++.++... .++.+.+++.....     ..+...+....+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  203 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYS  203 (355)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEE
T ss_pred             ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeecccc
Confidence            6899999999988877632211      1122344455544443322 22233333333222     1234445667788


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeee--eecc-------CCCccceeEEEEcCCCCCEEEEEeCC----------CeE
Q psy8448         245 ADGHSVLSASSDGTVKMWNLKTTECTST--FKSL-------GASDIAVNSIHLLPKNTEHFVVCNKT----------NTV  305 (482)
Q Consensus       245 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~-------~~~~~~v~~i~~~~~~~~~l~~~~~d----------~~i  305 (482)
                      +++..++.++.++.+.+|++..++....  ....       .........+++++++ ..++....+          +.|
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v  282 (355)
T d2bbkh_         204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFV  282 (355)
T ss_dssp             TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEE
T ss_pred             CCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecCCCCeE
Confidence            8888999999999999999988754221  1100       0011223458888988 444443322          479


Q ss_pred             EEEEc-CCcEEEEecCCcccCcCEEEEEEcCCCC--EEEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccc
Q psy8448         306 VIMNM-QGQIVRSLSSGKREGGDFLCCTTSPRGE--WIYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVD  382 (482)
Q Consensus       306 ~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (482)
                      .+||. +++.+..+..    ...+.+++|+|||+  ++++++.|+.|+                  +||.++++.+.++.
T Consensus       283 ~v~d~~t~~~~~~~~~----~~~~~~~a~spDG~~~l~v~~~~d~~i~------------------v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         283 VVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKTLY------------------IHDAESGEELRSVN  340 (355)
T ss_dssp             EEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEE------------------EEETTTCCEEEEEC
T ss_pred             EEEeCCCCcEEEEecC----CCCEEEEEEcCCCCeEEEEEECCCCEEE------------------EEECCCCCEEEEEe
Confidence            99999 5777776653    34578999999998  455677899999                  77888886665554


Q ss_pred             c
Q psy8448         383 S  383 (482)
Q Consensus       383 ~  383 (482)
                      .
T Consensus       341 ~  341 (355)
T d2bbkh_         341 Q  341 (355)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.67  E-value=2.9e-15  Score=141.76  Aligned_cols=140  Identities=10%  Similarity=0.054  Sum_probs=99.1

Q ss_pred             CCCceeeccCCccccccccccccccccceeeecCCCCcEEEEEEcCCCCEEEEEeC---------CCeEEEEecCCCcee
Q psy8448          65 PPGTTIDLFRGKAAMKDQEEEKYPTQLSKQIKFGSKSHVECARFSPDGQYLITGSV---------DGFIEVWNFTTGKIR  135 (482)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---------dg~v~iwd~~~~~~~  135 (482)
                      +++..+..-++.+.+|+.........+....+..|...|.++.|||||++|+.++.         ++.+.|||+.+++..
T Consensus        26 ~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~  105 (470)
T d2bgra1          26 SDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI  105 (470)
T ss_dssp             SSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred             CCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc
Confidence            44445555556667777665544333333444577789999999999999998753         567899999988753


Q ss_pred             eccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc-----------------cCCCeEE
Q psy8448         136 KDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA-----------------HSLGVTC  198 (482)
Q Consensus       136 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~v~~  198 (482)
                      . +.        .|...+..+.|+|||+++|.. .++.+.+|+..+++..+.....                 .......
T Consensus       106 ~-l~--------~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1         106 T-EE--------RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             C-SS--------CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             c-cc--------cCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            3 22        235779999999999999996 4678999999888765543211                 1223456


Q ss_pred             EEEccCCCEEEEEECC
Q psy8448         199 IQFSRDNSQILTASFD  214 (482)
Q Consensus       199 i~~~~~~~~l~~~~~d  214 (482)
                      +.|+|||++|+....|
T Consensus       176 ~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEECTTSSEEEEEEEE
T ss_pred             cEECCCCCccceeEec
Confidence            7899999999987654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=3e-14  Score=130.04  Aligned_cols=230  Identities=9%  Similarity=-0.056  Sum_probs=141.2

Q ss_pred             CCCcEEEEEEcCCCCEEEE---EeCCC--eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe----
Q psy8448          99 SKSHVECARFSPDGQYLIT---GSVDG--FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS----  169 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s---~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~----  169 (482)
                      +.++...++..++++....   ...+|  .|.+||..+++.+..+....          ...++|+|||+.|++.+    
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~----------~~~~a~spDg~~i~~~~~~~~   87 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF----------LSLAVAGHSGSDFALASTSFA   87 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT----------TCEEEECTTSSCEEEEEEEET
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC----------CCcceECCCCCEEEEEcccCc
Confidence            3444555566777775422   23334  57777999998877655432          22588999999988865    


Q ss_pred             ------CCCcEEEEEcCCCeEeEEeeccc------CCCeEEEEEccCCCEEEEEE-CCCeEEEEeCCCCceEEEeecccc
Q psy8448         170 ------QSGKVKIWKIATGQCLRKLEKAH------SLGVTCIQFSRDNSQILTAS-FDTYVRIHGLKSGKMLKEFRGHSS  236 (482)
Q Consensus       170 ------~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~  236 (482)
                            .|+.|.+||..+++....+....      ......++|+|||++++++. .++.+.+||+.+++....+..+..
T Consensus        88 ~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~  167 (368)
T d1mdah_          88 RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC  167 (368)
T ss_dssp             TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC
T ss_pred             cccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc
Confidence                  36789999999999888763221      11234689999999998876 568999999999998888775544


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee---ccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q psy8448         237 FVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFK---SLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ  313 (482)
Q Consensus       237 ~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~  313 (482)
                      ...   +......++..+.||.+.++++..........   ....+...+..+.+.+++ ..+.  ...+.+.+++....
T Consensus       168 ~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~--~~~~~v~~~~~~~~  241 (368)
T d1mdah_         168 FHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG-MLVW--AVASSILQGDIPAA  241 (368)
T ss_dssp             CCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT-EEEE--CBSSCCEEEECCSS
T ss_pred             ceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc-EEEE--ecCCCEEEEeecCC
Confidence            321   11234556667778888888876544322211   111334445566777765 3333  34456677776433


Q ss_pred             EEEEecCCcc----------cCcCEEEEEEcCCCCEEEEEe
Q psy8448         314 IVRSLSSGKR----------EGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       314 ~~~~~~~~~~----------~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      ..........          .......+++++++..++...
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~  282 (368)
T d1mdah_         242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             ceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence            2222221110          011123467788877766543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=2.4e-13  Score=123.90  Aligned_cols=249  Identities=12%  Similarity=0.050  Sum_probs=159.9

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCc
Q psy8448         105 CARFSPDGQYLITGS----------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGK  173 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~  173 (482)
                      .++|+|||+.|++.+          .|+.|.+||..+++....+..+...... .......++|+|||++|+++. .++.
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~-~g~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS-VGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-BSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceec-ccCCccceEECCCCCEEEEEeCCCCe
Confidence            589999999998754          3678999999999988776544321111 012234689999999998876 5799


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE------eeccccceeEEEEcCCC
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE------FRGHSSFVNDITFTADG  247 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~i~~l~~~~~~  247 (482)
                      +.+||+.+++....+.......+    +......++..+.||.+.++++........      +..+...+....+.+++
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  223 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEEECCCCcEeEEeeccCcceE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc
Confidence            99999999998887743222211    112234566667788888887765543222      22344555677788877


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeccC---------CCccceeEEEEcCCCCCEEEEEeCC--------CeEEEEEc
Q psy8448         248 HSVLSASSDGTVKMWNLKTTECTSTFKSLG---------ASDIAVNSIHLLPKNTEHFVVCNKT--------NTVVIMNM  310 (482)
Q Consensus       248 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~~l~~~~~d--------~~i~i~d~  310 (482)
                      ..+.+.  ++.+.++++..+..........         ........++++|++..++++...+        ..|.+||.
T Consensus       224 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~  301 (368)
T d1mdah_         224 MLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             EEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             EEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence            655443  4567777766554332211000         0111234578888885444443322        35889999


Q ss_pred             -CCcEEEEecCCcccCcCEEEEEEcCCCC-E-EEEEeCCcEEEEEeehhhhhhhcccccceeeeecccceeeccc
Q psy8448         311 -QGQIVRSLSSGKREGGDFLCCTTSPRGE-W-IYCVGEDMVLVVRLIQQYLKESNLMKTLQCLQEETGVSLNTVD  382 (482)
Q Consensus       311 -~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (482)
                       .++.+..+..    ...+..++|+|||+ + ++++..|+.|+                  +||..+|+.+..++
T Consensus       302 ~t~~~~~~~~~----~~~~~~~a~spDG~~~ly~s~~~~~~v~------------------v~D~~tgk~~~~i~  354 (368)
T d1mdah_         302 SVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLD------------------IYDAASDQDQSSVE  354 (368)
T ss_dssp             SSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEE------------------EEESSSCEEEEECC
T ss_pred             CCCcEeEEecC----CCceeEEEECCCCCEEEEEEeCCCCeEE------------------EEECCCCCEEEEEE
Confidence             5776666553    34678899999997 3 45667789999                  77888887776664

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.47  E-value=3.6e-12  Score=120.12  Aligned_cols=144  Identities=13%  Similarity=0.114  Sum_probs=111.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---------CCcEE
Q psy8448         105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---------SGKVK  175 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---------dg~i~  175 (482)
                      .+.|.++++++..  .++.+.+||+.+++....+..   ..+..|...|.++.|+||+++|+.++.         ++.+.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLEN---STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECT---TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEch---hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            4679999987764  478899999999987654432   244556778999999999999998753         56789


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec------------------cccc
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG------------------HSSF  237 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------~~~~  237 (482)
                      +||+.+++.. .+ ..+...+..+.|+|||+.|+... ++.+++|+..+++..+....                  ..+.
T Consensus        96 l~d~~~~~~~-~l-~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          96 IYDLNKRQLI-TE-ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             EEETTTTEEC-CS-SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEECCCCccc-cc-ccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            9999988754 34 56788899999999999999975 77899999998876654321                  1233


Q ss_pred             eeEEEEcCCCCEEEEEeCC
Q psy8448         238 VNDITFTADGHSVLSASSD  256 (482)
Q Consensus       238 i~~l~~~~~~~~l~~~~~d  256 (482)
                      ...+.|+|||+.|+....|
T Consensus       173 ~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         173 YSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             SBCEEECTTSSEEEEEEEE
T ss_pred             ccccEECCCCCccceeEec
Confidence            4668899999999987654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.46  E-value=1.7e-12  Score=117.56  Aligned_cols=237  Identities=10%  Similarity=0.090  Sum_probs=159.8

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCC--EEEEEeCCC--
Q psy8448          98 GSKSHVECARFSPDGQYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSE--MLASGSQSG--  172 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~--~l~~~~~dg--  172 (482)
                      .|.-.+.+..++|||++|++.. .+++|.++|+.+++....+....       ...+..++|+|+++  |++..+.+.  
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~-------g~gphgi~~spdg~t~YV~~~~~~~v~  141 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN-------VQAIHGLRLQKVPKTNYVFCNAEFVIP  141 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT-------CCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCC-------CCCccceEEeccCCEEEEEeccCCccc
Confidence            3445666777789999996654 77899999999998877665432       35789999999998  444444332  


Q ss_pred             ---------------cEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-----------------------
Q psy8448         173 ---------------KVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-----------------------  214 (482)
Q Consensus       173 ---------------~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----------------------  214 (482)
                                     .+..+|..+.+...++.  -......++|+|+|+++++++.+                       
T Consensus       142 ~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~--v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~  219 (441)
T d1qnia2         142 QPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI--VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV  219 (441)
T ss_dssp             SSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH
T ss_pred             ccCcccccccccccceEEeecCccceeeEEEe--cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc
Confidence                           23557888877777663  23457889999999999888754                       


Q ss_pred             ------------------CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE-EeCCCcEEEEECCCCcee-----
Q psy8448         215 ------------------TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS-ASSDGTVKMWNLKTTECT-----  270 (482)
Q Consensus       215 ------------------g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~-----  270 (482)
                                        +.+.+++....+.+..+.... ....+.++|||+++++ +..+++|.+||+++.+..     
T Consensus       220 p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~  298 (441)
T d1qnia2         220 ERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI  298 (441)
T ss_dssp             HHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred             cceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence                              233444444445555555443 3578999999998765 567899999998753210     


Q ss_pred             ---eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-----------CcEEEEecCC--cccCcCEEEEEEc
Q psy8448         271 ---STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-----------GQIVRSLSSG--KREGGDFLCCTTS  334 (482)
Q Consensus       271 ---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-----------~~~~~~~~~~--~~~~~~v~~~~~~  334 (482)
                         ..+.......-.....+|.++| ..+.+...|..|..|++.           ...+..+..+  ..|...+.+.+++
T Consensus       299 ~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~  377 (441)
T d1qnia2         299 ELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRD  377 (441)
T ss_dssp             CGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTT
T ss_pred             CcceEEEeecccccCcccceecCCc-eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccC
Confidence               1111101112233556899988 778888899999999973           1233444322  2334445567789


Q ss_pred             CCCCEEEEEeC
Q psy8448         335 PRGEWIYCVGE  345 (482)
Q Consensus       335 ~~g~~l~~~~~  345 (482)
                      |||+||++++.
T Consensus       378 pdGk~l~s~~k  388 (441)
T d1qnia2         378 ADGKWLVVLSK  388 (441)
T ss_dssp             CCCCEEEEEES
T ss_pred             CCCcEEEecCc
Confidence            99999999953

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=3.8e-10  Score=97.76  Aligned_cols=244  Identities=14%  Similarity=0.184  Sum_probs=170.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCC-CEEEEE-eCCCcEEEEEc
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDS-EMLASG-SQSGKVKIWKI  179 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~~~-~~dg~i~iwd~  179 (482)
                      ....++++++|+++++-..++.|++||.+ ++.+..+......  .+.......+++.++. ..+++. +.++.|..++.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR--DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS--TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC--cccccccccccccccccccceeccCCccccccccc
Confidence            46899999999988887788999999964 6655444222110  1112245556666543 444433 34567777775


Q ss_pred             CCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee--ccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         180 ATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR--GHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                       .++....+..........+++.+++..+++....+.+.+++. +++.+..+.  .+......+++.++++.+++....+
T Consensus       101 -~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         101 -YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             -TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             -cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeecccc
Confidence             566666664455566889999999988888877888999985 566666553  3456678899999999888888889


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC-CCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK-TNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPR  336 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  336 (482)
                      .|.+||.. ++.+..+... +.......|++.++| +++++-.. ++.|.+|+.+|+.+..+..... ......+++.|+
T Consensus       179 ~V~~~d~~-G~~~~~~g~~-g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~-~~~p~~vav~~d  254 (279)
T d1q7fa_         179 CVKVFNYE-GQYLRQIGGE-GITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISALESKVK-HAQCFDVALMDD  254 (279)
T ss_dssp             EEEEEETT-CCEEEEESCT-TTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEEEESSC-CSCEEEEEEETT
T ss_pred             ceeeeecC-Cceeeeeccc-ccccCCcccccccCC-eEEEEECCCCcEEEEECCCCCEEEEEeCCCC-CCCEeEEEEeCC
Confidence            99999965 5556555321 234456789999999 67776544 4579999999988877754321 345788999999


Q ss_pred             CCEEEEEeCCcEEEEEeeh
Q psy8448         337 GEWIYCVGEDMVLVVRLIQ  355 (482)
Q Consensus       337 g~~l~~~~~dg~i~iw~~~  355 (482)
                      |.++ +.+.++.|++|++.
T Consensus       255 G~l~-V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         255 GSVV-LASKDYRLYIYRYV  272 (279)
T ss_dssp             TEEE-EEETTTEEEEEECS
T ss_pred             CcEE-EEeCCCeEEEEEee
Confidence            9754 45678999977654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.38  E-value=9.1e-10  Score=96.58  Aligned_cols=232  Identities=12%  Similarity=0.079  Sum_probs=160.0

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q psy8448         102 HVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIAT  181 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~  181 (482)
                      .+..++++|||+++++...+++|..|+.. ++......         ....+.+++|.++|+++++...++.+..++...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~---------~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHAT---------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEE---------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEc---------CCCCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence            58899999999999999999999998855 33222111         246789999999999888888888888887654


Q ss_pred             C--eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec----------cccceeEEEEcCCCCE
Q psy8448         182 G--QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG----------HSSFVNDITFTADGHS  249 (482)
Q Consensus       182 ~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~i~~l~~~~~~~~  249 (482)
                      .  ................+++.+++.++++.+.++.+..+|...+........          .......+.++. +..
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l  177 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFL  177 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEE
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cce
Confidence            3  222222233455688999999998888888889999999887754322211          112345666653 344


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEE
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~  329 (482)
                      +++.+..+.|..++............. ........+++.++| .++++...++.|..++..++......... .....+
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~G~~~~~~~~~~-~~~~pt  254 (302)
T d2p4oa1         178 YVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQ-GVIGST  254 (302)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGG-TCTTEE
T ss_pred             eeecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCC-CEEEEEcCCCcEEEECCCCCEEEEEecCC-CCCCce
Confidence            556667888988888764432222111 123345679999999 78888888999999998877544443221 144578


Q ss_pred             EEEE---cCCCCEEEEEeCCc
Q psy8448         330 CCTT---SPRGEWIYCVGEDM  347 (482)
Q Consensus       330 ~~~~---~~~g~~l~~~~~dg  347 (482)
                      +++|   ++|++.|+.++..+
T Consensus       255 ~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         255 AVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             EEEECCSTTTTTEEEEEECTT
T ss_pred             EEEEcCCCCCCCEEEEECCCC
Confidence            9999   67888888776554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.36  E-value=4.1e-10  Score=96.48  Aligned_cols=236  Identities=9%  Similarity=-0.042  Sum_probs=155.6

Q ss_pred             CCCcEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIW  177 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iw  177 (482)
                      +...-..++++++|++.++.. ..+.+..++......... ....       ......++++++++.+++....+.++++
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-~~~~-------~~~p~gvav~~~g~i~v~d~~~~~i~~~   83 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNG-------LYQPQGLAVDGAGTVYVTDFNNRVVTLA   83 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-CCCS-------CCSCCCEEECTTCCEEEEETTTEEEEEC
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-ccCC-------ccCceEEEEcCCCCEEEeeeeeceeeee
Confidence            334568999999999777654 456777776554332221 1111       1345788999999877776666666666


Q ss_pred             EcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC
Q psy8448         178 KIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG  257 (482)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg  257 (482)
                      +-.+.......  ........+++.+++.++++-..+..+..++..................+++++++++.+++...++
T Consensus        84 ~~~~~~~~~~~--~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          84 AGSNNQTVLPF--DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             TTCSCCEECCC--CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeccceeeeee--eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccc
Confidence            54444433222  2335678999999998777766677788887655443222222234567899999999888888888


Q ss_pred             cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCC
Q psy8448         258 TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRG  337 (482)
Q Consensus       258 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g  337 (482)
                      .|..+|...........   ..-.....+++.+++ .++++....+.|..++..+.....+....  ......++++++|
T Consensus       162 ~i~~~d~~~~~~~~~~~---~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~~~~~~~~~--~~~P~~i~~d~~g  235 (260)
T d1rwia_         162 RVVKLEAESNNQVVLPF---TDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTG--LNTPLAVAVDSDR  235 (260)
T ss_dssp             EEEEECTTTCCEEECCC---SSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTCSCCEECCCCS--CCCEEEEEECTTC
T ss_pred             cccccccccceeeeeec---cccCCCccceeeeee-eeeeeecCCCEEEEEeCCCCeEEEEccCC--CCCeEEEEEeCCC
Confidence            89999987654332211   223445789999988 78888888888988888655444443221  3456889999999


Q ss_pred             CEEEEEeCCcEEE
Q psy8448         338 EWIYCVGEDMVLV  350 (482)
Q Consensus       338 ~~l~~~~~dg~i~  350 (482)
                      .++++-..++.|+
T Consensus       236 ~l~vad~~~~rI~  248 (260)
T d1rwia_         236 TVYVADRGNDRVV  248 (260)
T ss_dssp             CEEEEEGGGTEEE
T ss_pred             CEEEEECCCCEEE
Confidence            8877767777776

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.34  E-value=7.2e-10  Score=99.92  Aligned_cols=250  Identities=9%  Similarity=0.105  Sum_probs=145.9

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEE--Ee-CCCcE
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLAS--GS-QSGKV  174 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~--~~-~dg~i  174 (482)
                      .....+..|+|+|+++.|.+... +.+..|.+..............      ......++++++++.+..  +. ..+.+
T Consensus        37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~------~~~p~~v~~~~~~~~~~v~~a~~~~~~v  109 (365)
T d1jofa_          37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI------GGHPRANDADTNTRAIFLLAAKQPPYAV  109 (365)
T ss_dssp             CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC------CSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred             cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC------CCCcEEEEECCCCCEEEEEEecCCCCEE
Confidence            45556778999999999988764 5688887764322221111111      123446677888774332  22 23555


Q ss_pred             EEEEcCCC-------------e---EeEEeecccCCCeEEEEEccCCCEEEEEEC-CCeEEEEeCCCCceEE---Ee--e
Q psy8448         175 KIWKIATG-------------Q---CLRKLEKAHSLGVTCIQFSRDNSQILTASF-DTYVRIHGLKSGKMLK---EF--R  232 (482)
Q Consensus       175 ~iwd~~~~-------------~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~---~~--~  232 (482)
                      ..+.+...             .   ............+.++.|+|+|++++++.. ...|.+|+......+.   ..  .
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T d1jofa_         110 YANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             EEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred             EEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec
Confidence            55443211             0   111111223345789999999999888864 3478888765432221   11  1


Q ss_pred             ccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceee--eeec---c-----------CCCccceeEEEEcCCCCCE
Q psy8448         233 GHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTECTS--TFKS---L-----------GASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       233 ~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~--~~~~---~-----------~~~~~~v~~i~~~~~~~~~  295 (482)
                      ........++|+|+++++.+.. .++.|.+|++.......  ....   .           .........+.++|+| ++
T Consensus       190 ~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~  268 (365)
T d1jofa_         190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KY  268 (365)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SE
T ss_pred             CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCC-CE
Confidence            2355688999999999886655 57889999987654221  1110   0           0122345678999999 55


Q ss_pred             EEEEe-CC-----CeEEEEEcC--CcEEEE--ecCCcccCcCEEEEEEcC-CCCEEEEE-eCCcEEEEEeeh
Q psy8448         296 FVVCN-KT-----NTVVIMNMQ--GQIVRS--LSSGKREGGDFLCCTTSP-RGEWIYCV-GEDMVLVVRLIQ  355 (482)
Q Consensus       296 l~~~~-~d-----~~i~i~d~~--~~~~~~--~~~~~~~~~~v~~~~~~~-~g~~l~~~-~~dg~i~iw~~~  355 (482)
                      ++++. .+     ..|..|++.  +.....  +............++++| +|++|+++ ..++.|.+|+++
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            55543 22     237777773  322211  111111123456799998 89988766 467999977553

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=6.7e-09  Score=89.22  Aligned_cols=218  Identities=18%  Similarity=0.222  Sum_probs=139.1

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-CCc
Q psy8448          98 GSKSHVECARFSPDGQYLITGSVD---GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-SGK  173 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-dg~  173 (482)
                      .+...+...+|||||+.||.....   ..+.+.+...+.......         +........|+|+|+.++.... ++.
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~spdg~~i~~~~~~~~~  106 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS---------FPRHNGAPAFSPDGSKLAFALSKTGS  106 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC---------CSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee---------eecccccceecCCCCeeeEeeecCCc
Confidence            456778899999999999976543   357777766655433222         2467888999999998887663 333


Q ss_pred             EEEEE--cCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE-CCC--eEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         174 VKIWK--IATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS-FDT--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       174 i~iwd--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      ..++.  .........  ...........+++++..++..+ .++  .|...++..+... .+...........|+|+++
T Consensus       107 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~  183 (269)
T d2hqsa1         107 LNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGK  183 (269)
T ss_dssp             CEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSS
T ss_pred             cceeecccccccceee--eeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccc
Confidence            33333  222222222  23444455667777776655444 444  5666777665433 3344566677889999999


Q ss_pred             EEEEEeCCC-c--EEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCcEEEEecCCcc
Q psy8448         249 SVLSASSDG-T--VKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT--NTVVIMNMQGQIVRSLSSGKR  323 (482)
Q Consensus       249 ~l~~~~~dg-~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~  323 (482)
                      .++..+.++ .  +.+.+...+... ..    ..........|+|+|..++++....  ..|.++++++.....+...  
T Consensus       184 ~~~~~~~~~~~~~i~~~~~~~~~~~-~~----~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~--  256 (269)
T d2hqsa1         184 FMVMVSSNGGQQHIAKQDLATGGVQ-VL----SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT--  256 (269)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEE-EC----CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS--
T ss_pred             eeEEEeecCCceeeeEeecccccce-Ee----ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCC--
Confidence            988766543 3  555555554432 22    3344567789999995555554433  4678889988777777654  


Q ss_pred             cCcCEEEEEEcC
Q psy8448         324 EGGDFLCCTTSP  335 (482)
Q Consensus       324 ~~~~v~~~~~~~  335 (482)
                       .+.+...+|+|
T Consensus       257 -~g~~~~p~WSP  267 (269)
T d2hqsa1         257 -DGQVKFPAWSP  267 (269)
T ss_dssp             -SSEEEEEEECC
T ss_pred             -CCcEEeEEeCC
Confidence             56677889998

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=5e-08  Score=83.61  Aligned_cols=203  Identities=17%  Similarity=0.082  Sum_probs=124.4

Q ss_pred             eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCeEeEEeecccCCCeEEE
Q psy8448         123 FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG---KVKIWKIATGQCLRKLEKAHSLGVTCI  199 (482)
Q Consensus       123 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~i  199 (482)
                      .|.|.|...........         +...+...+|||||++||......   .+.+.+...+.....  ..+.......
T Consensus        20 ~l~i~d~dG~~~~~l~~---------~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   88 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR---------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--ASFPRHNGAP   88 (269)
T ss_dssp             EEEEEETTSCSCEEEEE---------ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE--ECCSSCEEEE
T ss_pred             EEEEEcCCCCCcEEEec---------CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE--eeeecccccc
Confidence            57777765433332222         135688899999999999876443   466677666654443  3467778899


Q ss_pred             EEccCCCEEEEEECC-C--eEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe-CCC--cEEEEECCCCceeeee
Q psy8448         200 QFSRDNSQILTASFD-T--YVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-SDG--TVKMWNLKTTECTSTF  273 (482)
Q Consensus       200 ~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~  273 (482)
                      .|+|+|+.++..... +  .+..+.......... ...........+++++..++..+ .+|  .|.+.++..+......
T Consensus        89 ~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~  167 (269)
T d2hqsa1          89 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT  167 (269)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred             eecCCCCeeeEeeecCCccceeecccccccceee-eeccccccccccccccccceecccccCCceEeeeecccccceeee
Confidence            999999988876543 2  233333333333222 22344445566777777665544 344  4566666665433332


Q ss_pred             eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc--CCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         274 KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM--QGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       274 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                          ..........|+|++..++......+...+|..  .+.....+..    ........|+|||+.|+..+.
T Consensus       168 ----~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         168 ----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS----TFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             ----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC----SSSCEEEEECTTSSEEEEEEE
T ss_pred             ----cccccccccccccccceeEEEeecCCceeeeEeecccccceEeec----CccccceEECCCCCEEEEEEc
Confidence                445667788999999555555566665555544  4444444432    345567899999999885543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=3.4e-09  Score=90.59  Aligned_cols=192  Identities=8%  Similarity=-0.001  Sum_probs=127.3

Q ss_pred             ccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEE
Q psy8448         151 EAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLK  229 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  229 (482)
                      .....+++.++|+..++.. ..+.+..++.......... .........+++++++..+++....+.+++++-.+...+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-CCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-cCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            3568999999999766654 5567777765433322221 2223345788999999877766666666666655554443


Q ss_pred             EeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEE
Q psy8448         230 EFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMN  309 (482)
Q Consensus       230 ~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d  309 (482)
                      ... ....+.+++++++++++++-..+..+..++...........   ........+++.+++ .++++...++.|..++
T Consensus        93 ~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d  167 (260)
T d1rwia_          93 PFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF---TGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLE  167 (260)
T ss_dssp             CCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC---CSCCSCCEEEECTTC-CEEEEEGGGTEEEEEC
T ss_pred             eee-eeeecccccccccceeEeeccccccccccccccceeeeeee---cccCCcceeeecCCC-CEeeeccccccccccc
Confidence            333 23457899999999987776667778778766543222111   222345789999988 7888888889999999


Q ss_pred             cCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         310 MQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      .++.....+....  ......++++++|+++++....+.|.
T Consensus       168 ~~~~~~~~~~~~~--~~~p~gi~~d~~g~l~vsd~~~~~i~  206 (260)
T d1rwia_         168 AESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHNTNQVV  206 (260)
T ss_dssp             TTTCCEEECCCSS--CCSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             cccceeeeeeccc--cCCCccceeeeeeeeeeeecCCCEEE
Confidence            9766555554221  34568899999999888887788887

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.24  E-value=3.7e-09  Score=95.16  Aligned_cols=192  Identities=8%  Similarity=0.079  Sum_probs=114.0

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eEeEEeecccCCCeEEEEEccCCCEEEEEE---CCCeEEEEeCCC--
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIATG-QCLRKLEKAHSLGVTCIQFSRDNSQILTAS---FDTYVRIHGLKS--  224 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~dg~i~i~d~~~--  224 (482)
                      ..+..|+++|++++|+++.. +.+..|.+... ................++++++++.+++..   ..+.|..+.+..  
T Consensus        40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~  118 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence            45677999999999988765 56777776543 232222122333455677888887543322   234555443321  


Q ss_pred             -----------Cce---EEE-eeccccceeEEEEcCCCCEEEEEeC-CCcEEEEECCCCceee---eeeccCCCccceeE
Q psy8448         225 -----------GKM---LKE-FRGHSSFVNDITFTADGHSVLSASS-DGTVKMWNLKTTECTS---TFKSLGASDIAVNS  285 (482)
Q Consensus       225 -----------~~~---~~~-~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~---~~~~~~~~~~~v~~  285 (482)
                                 ++.   ... -+.....+.++.|+|+|+++++++. ...|.+|+........   ..... ........
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-~~g~gPr~  197 (365)
T d1jofa_         119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRW  197 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEE
T ss_pred             CcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec-CCCCceEE
Confidence                       111   000 0112234789999999999888765 4568888765432221   11111 23456789


Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEEcCCc---EEEEecC--------------CcccCcCEEEEEEcCCCCEEEEEe
Q psy8448         286 IHLLPKNTEHFVVCNKTNTVVIMNMQGQ---IVRSLSS--------------GKREGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       286 i~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~--------------~~~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      ++|+|++..++++...++.|.+|+.+..   .+.....              ..........+.++|||++|+++.
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            9999999656667778899999998422   2221110              001122345789999999998764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.22  E-value=2.1e-08  Score=87.86  Aligned_cols=239  Identities=13%  Similarity=0.082  Sum_probs=152.6

Q ss_pred             cEEEEEEcCCCCEEEEEeC-------CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcE
Q psy8448         102 HVECARFSPDGQYLITGSV-------DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKV  174 (482)
Q Consensus       102 ~v~~~~~s~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i  174 (482)
                      ....++|.|+|+++++...       +|+|..||..++...........    ........++|.++++.++++...+.+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~----~~~g~P~Gl~~~~dg~~l~vad~~~~i   94 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN----GYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET----TEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccc----cCCCcceeEEEeCCCCEEEEEECCCeE
Confidence            4567899999998876532       46799999888765432221110    012346789999999988888877788


Q ss_pred             EEEEcCCCeEeEEeecccC----CCeEEEEEccCCCEEEEEEC---------------CCeEEEEeCCCCceEEEeeccc
Q psy8448         175 KIWKIATGQCLRKLEKAHS----LGVTCIQFSRDNSQILTASF---------------DTYVRIHGLKSGKMLKEFRGHS  235 (482)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~----~~v~~i~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~  235 (482)
                      ..++...+.... +.....    ...+.+++.++|...++-..               .|.|..++. .++..... ..-
T Consensus        95 ~~~~~~g~~~~~-~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~-~~~  171 (314)
T d1pjxa_          95 LVVQTDGTFEEI-AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD-TAF  171 (314)
T ss_dssp             EEEETTSCEEEC-CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE-EEE
T ss_pred             EEEeCCCcEEEE-EeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEee-CCc
Confidence            889976554322 211111    13577999999987766421               235555554 33433322 233


Q ss_pred             cceeEEEEcCCCC-----EEEEEeCCCcEEEEECCCCceeee---eeccC-CCccceeEEEEcCCCCCEEEEEeCCCeEE
Q psy8448         236 SFVNDITFTADGH-----SVLSASSDGTVKMWNLKTTECTST---FKSLG-ASDIAVNSIHLLPKNTEHFVVCNKTNTVV  306 (482)
Q Consensus       236 ~~i~~l~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d~~i~  306 (482)
                      ...+.++|+|++.     ++++-+..+.|..||+.....+..   +.... ........+++..+| +++++....+.|.
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~  250 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIE  250 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEEEEcCCCEEE
Confidence            3457899998764     444456678899998764432221   11111 122335679999998 7888888899999


Q ss_pred             EEEcC-CcEEEEecCCcccCcCEEEEEEcCCCCEE-EEEeCCcEEEE
Q psy8448         307 IMNMQ-GQIVRSLSSGKREGGDFLCCTTSPRGEWI-YCVGEDMVLVV  351 (482)
Q Consensus       307 i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~g~~l-~~~~~dg~i~i  351 (482)
                      +||.+ +.....+...   ....++++|.|+++.| ++.+.+|.|+-
T Consensus       251 ~~dp~~g~~~~~i~~p---~~~~t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRCP---FEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             EECTTCBSCSEEEECS---SSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEeCCCCEEEEEEECC---CCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence            99986 4444444432   3567899999999755 45667788883

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=8.4e-09  Score=95.75  Aligned_cols=231  Identities=12%  Similarity=0.151  Sum_probs=140.5

Q ss_pred             CcEEEEEEcCCCCEEEEEe---------CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC
Q psy8448         101 SHVECARFSPDGQYLITGS---------VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS  171 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d  171 (482)
                      -.+....||||+++++...         ..+.+.++|+.++..........      ....+....|||+|+.||... +
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~------~~~~l~~~~wSPDG~~iafv~-~  133 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV------SNAKLQYAGWGPKGQQLIFIF-E  133 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC------CSCCCSBCCBCSSTTCEEEEE-T
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC------CccccceeeeccCCceEEEEe-c
Confidence            3577788999999988764         35788999999887544322221      123456688999999999876 5


Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCe-----------------EEEEEccCCCEEEEEECC-C------------------
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGV-----------------TCIQFSRDNSQILTASFD-T------------------  215 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v-----------------~~i~~~~~~~~l~~~~~d-g------------------  215 (482)
                      +.|.+.+..++...+....+....+                 ..+.|+|||++|+....| .                  
T Consensus       134 ~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~  213 (465)
T d1xfda1         134 NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV  213 (465)
T ss_dssp             TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred             ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccccee
Confidence            6888888877766655433222222                 467899999999986532 1                  


Q ss_pred             ---------------eEEEEeCCCCceEEEee------ccccceeEEEEcCCCCEEEEEeC-C---CcEEEEECCCCcee
Q psy8448         216 ---------------YVRIHGLKSGKMLKEFR------GHSSFVNDITFTADGHSVLSASS-D---GTVKMWNLKTTECT  270 (482)
Q Consensus       216 ---------------~i~i~d~~~~~~~~~~~------~~~~~i~~l~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~  270 (482)
                                     .+.++|+.++.......      .....+..+.|.|+++.++.... +   ..+.++|..++++.
T Consensus       214 ~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             eeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence                           34555554443221111      12234678899999886655432 2   25888999999876


Q ss_pred             eeeeccCCCccc----eeEEEEcCCCCCEEEE-Ee-CCC--eEEEEEc-------CCcEEEEecCCcccCcCEEEE-EEc
Q psy8448         271 STFKSLGASDIA----VNSIHLLPKNTEHFVV-CN-KTN--TVVIMNM-------QGQIVRSLSSGKREGGDFLCC-TTS  334 (482)
Q Consensus       271 ~~~~~~~~~~~~----v~~i~~~~~~~~~l~~-~~-~d~--~i~i~d~-------~~~~~~~~~~~~~~~~~v~~~-~~~  334 (482)
                      ..+...  .+..    -....|+|+|..+++. .+ .+|  .+...++       .++....+..+   ...|..+ +|+
T Consensus       294 ~~~~e~--~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G---~w~V~~i~~~d  368 (465)
T d1xfda1         294 KKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG---DWDVTKILAYD  368 (465)
T ss_dssp             EEEEEE--CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS---SSCEEEEEEEE
T ss_pred             EEEEEc--CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC---CceEEEEEEEc
Confidence            655421  1111    2346788998655443 22 222  3443332       23333444433   4556654 688


Q ss_pred             CCCCEEEEE
Q psy8448         335 PRGEWIYCV  343 (482)
Q Consensus       335 ~~g~~l~~~  343 (482)
                      ++++.|+..
T Consensus       369 ~~~~~vyF~  377 (465)
T d1xfda1         369 EKGNKIYFL  377 (465)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCEEEEE
Confidence            888777643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.19  E-value=4.8e-08  Score=85.90  Aligned_cols=236  Identities=12%  Similarity=0.090  Sum_probs=154.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC----CCcEE
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ----SGKVK  175 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~----dg~i~  175 (482)
                      ...+..++|.++|++.++-...+.|+.|+..+++........        ......+++.++|+++++...    .+.+.
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~--------~~~p~gla~~~dG~l~va~~~~~~~~~~i~  110 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH--------KANPAAIKIHKDGRLFVCYLGDFKSTGGIF  110 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS--------SSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCC--------CCCeeEEEECCCCCEEEEecCCCccceeEE
Confidence            345678999999998887778899999998776544333211        346789999999987776543    23455


Q ss_pred             EEEcCCCeEeEEeec-ccCCCeEEEEEccCCCEEEEEEC------CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCC
Q psy8448         176 IWKIATGQCLRKLEK-AHSLGVTCIQFSRDNSQILTASF------DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGH  248 (482)
Q Consensus       176 iwd~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~  248 (482)
                      ..+............ ........+++.++|.+.++...      .+.+..++..... +..+...-...+.++|+|+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~  189 (319)
T d2dg1a1         111 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEK  189 (319)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSS
T ss_pred             EEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccc
Confidence            555554444333321 12345788999999986655432      2346666654433 333333334567899999998


Q ss_pred             EEEEE-eCCCcEEEEECCCC-ceeeee----eccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCc
Q psy8448         249 SVLSA-SSDGTVKMWNLKTT-ECTSTF----KSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGK  322 (482)
Q Consensus       249 ~l~~~-~~dg~i~i~d~~~~-~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  322 (482)
                      .|+.+ +..+.|..||+... ......    ............+++.++| +++++....+.|.++|.+|+.+..+....
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p~G~~l~~i~~P~  268 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPG  268 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTT
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEECCCCcEEEEEeCCC
Confidence            76554 56788999998643 211111    1000112234679999998 78888889999999999999888876432


Q ss_pred             c---cCcCEEEEEEcCCCCEEEEEeC
Q psy8448         323 R---EGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       323 ~---~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      .   +...+++++|.+++..+++...
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         269 RDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            1   2335679999998887776553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=4.9e-08  Score=84.13  Aligned_cols=194  Identities=14%  Similarity=0.226  Sum_probs=135.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecc-----cCCCeEEEEEccCCCE-EEEE-ECCCeEEEEeCCC
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKA-----HSLGVTCIQFSRDNSQ-ILTA-SFDTYVRIHGLKS  224 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~-l~~~-~~dg~i~i~d~~~  224 (482)
                      ....++++++++.+++-..+..|++||. +++.+..+...     .......+++.++... +++. +.++.|..++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            4689999999998777777889999995 46666665211     1123455666655433 3333 34457777775 5


Q ss_pred             CceEEEee-ccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC
Q psy8448         225 GKMLKEFR-GHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN  303 (482)
Q Consensus       225 ~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~  303 (482)
                      ++....+. ........+++.++++.+++....+.+.+++.. ++.+..+... .+......+++.+++ .++++....+
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~-~~~~~~~~i~~d~~g-~i~v~d~~~~  178 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS-KHLEFPNGVVVNDKQ-EIFISDNRAH  178 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT-TTCSSEEEEEECSSS-EEEEEEGGGT
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccc-ccccccceeeeccce-eEEeeecccc
Confidence            66665553 334567899999999988887777888888854 5555555322 344567788999988 7888888889


Q ss_pred             eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC-CcEEEE
Q psy8448         304 TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE-DMVLVV  351 (482)
Q Consensus       304 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~-dg~i~i  351 (482)
                      .|.+||..++.+..+... ........++++++|+.+++-.. ++.|.+
T Consensus       179 ~V~~~d~~G~~~~~~g~~-g~~~~P~giavD~~G~i~Vad~~~~~~v~~  226 (279)
T d1q7fa_         179 CVKVFNYEGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTI  226 (279)
T ss_dssp             EEEEEETTCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             ceeeeecCCceeeeeccc-ccccCCcccccccCCeEEEEECCCCcEEEE
Confidence            999999999988887532 22445788999999997776544 456773

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.16  E-value=5.1e-09  Score=91.68  Aligned_cols=190  Identities=11%  Similarity=0.056  Sum_probs=130.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce-EEE
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM-LKE  230 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~  230 (482)
                      .+..+++.|||+++++...+++|..|+... +.. .+ ......+.+++|.++|+++++...++.+..++...... ...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~-~~-~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQ-IH-ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEE-EE-EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEE-EE-EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence            577899999999999888899998888553 322 22 34566799999999999888888888888887654322 112


Q ss_pred             e--eccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeecc-------CCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         231 F--RGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSL-------GASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       231 ~--~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      +  .........+++.++++++++.+.++.+..+|...+.........       .........+.+..  ..++++.+.
T Consensus       106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~  183 (302)
T d2p4oa1         106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTE  183 (302)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETT
T ss_pred             ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCC
Confidence            2  124456789999999998888888899999998876533222110       01122345566554  367778888


Q ss_pred             CCeEEEEEcCCcE-E---EEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         302 TNTVVIMNMQGQI-V---RSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       302 d~~i~i~d~~~~~-~---~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      .+.|..++..... .   .....    ......++++++|++.++...++.|.
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~----~~~pdgia~d~dG~l~va~~~~~~V~  232 (302)
T d2p4oa1         184 KMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVV  232 (302)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred             CCeEEeccccccccccccccccC----CCCCcceEECCCCCEEEEEcCCCcEE
Confidence            8999988874221 1   11111    22345699999999888887888888

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.12  E-value=8.1e-08  Score=84.10  Aligned_cols=192  Identities=11%  Similarity=0.067  Sum_probs=120.2

Q ss_pred             cEEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCeEeEEeec---ccCCCeEEEEEccCCCEEEEEECCCeEEEEe
Q psy8448         152 AVMSLAYSRDSEMLASGSQ-------SGKVKIWKIATGQCLRKLEK---AHSLGVTCIQFSRDNSQILTASFDTYVRIHG  221 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d  221 (482)
                      ....++|.|+|+++++...       +|+|..||..++........   .....-..++|.+++..++++...+.|..++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3567789999997766432       46788999887765433211   1122356899999999888888878899999


Q ss_pred             CCCCceEEEeeccc----cceeEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCceeeeeeccCCCccc
Q psy8448         222 LKSGKMLKEFRGHS----SFVNDITFTADGHSVLSASS---------------DGTVKMWNLKTTECTSTFKSLGASDIA  282 (482)
Q Consensus       222 ~~~~~~~~~~~~~~----~~i~~l~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~  282 (482)
                      ..............    ...+.+++.++|++.++-..               .|.|..++.. ++......    .-..
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~----~~~~  173 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT----AFQF  173 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE----EESS
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC----Ccce
Confidence            86554322111111    13578999999987776422               2334444432 33332222    1223


Q ss_pred             eeEEEEcCCCC----CEEEEEeCCCeEEEEEc--CCcEE-----EEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         283 VNSIHLLPKNT----EHFVVCNKTNTVVIMNM--QGQIV-----RSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       283 v~~i~~~~~~~----~~l~~~~~d~~i~i~d~--~~~~~-----~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      -+.++|+|++.    .++++-+..+.|..|++  .+...     ..+...  .....-.+++.++|++.++....+.|.
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~--~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT--HEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC--SSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccc--ccccceeeEEecCCcEEEEEcCCCEEE
Confidence            46789988763    25566677889999987  33321     111111  123356799999999888888889999

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.08  E-value=2.2e-07  Score=81.59  Aligned_cols=194  Identities=11%  Similarity=0.104  Sum_probs=125.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC----CCeEEEEeCCCCce
Q psy8448         152 AVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF----DTYVRIHGLKSGKM  227 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~  227 (482)
                      .+..++|.++|++.++-...+.|..|+..+++....+ .........++++++|.++++...    .+.+...+......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            3568899999997776668889999998776655544 345567889999999987776543    23466666655554


Q ss_pred             EEEeec--cccceeEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448         228 LKEFRG--HSSFVNDITFTADGHSVLSASS------DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       228 ~~~~~~--~~~~i~~l~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                      ......  ....+..+++.++|++.++...      .+.+..++...........    .-...+.++|+|++..++++-
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~----~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ----NISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE----EESSEEEEEECTTSSEEEEEE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee----ccceeeeeeeccccceEEEec
Confidence            333321  2334778999999986665432      1235555554433222222    223457899999995566777


Q ss_pred             eCCCeEEEEEcC--CcEEEEec----CCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         300 NKTNTVVIMNMQ--GQIVRSLS----SGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       300 ~~d~~i~i~d~~--~~~~~~~~----~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      +..+.|..|+++  +.......    ...........++++++|++.++....+.|.
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~  252 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVL  252 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEE
Confidence            788999999983  32221111    0000122356799999999888888899999

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.93  E-value=3e-06  Score=73.05  Aligned_cols=224  Identities=15%  Similarity=0.096  Sum_probs=150.1

Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q psy8448         104 ECARFSPD-GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG  182 (482)
Q Consensus       104 ~~~~~s~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  182 (482)
                      .+..|++. +.+..+--..+.|.-||..+++.. .+..         ...+.++++.+++.++++ +.+ .+.++|..++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~---------~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg   88 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL---------PFMGSALAKISDSKQLIA-SDD-GLFLRDTATG   88 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---------SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC---------CCCcEEEEEecCCCEEEE-EeC-ccEEeecccc
Confidence            45678874 444455446789999999887643 2222         246889999999876655 454 5889999888


Q ss_pred             eEeEEeeccc---CCCeEEEEEccCCCEEEEEEC----CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEE-e
Q psy8448         183 QCLRKLEKAH---SLGVTCIQFSRDNSQILTASF----DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSA-S  254 (482)
Q Consensus       183 ~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~  254 (482)
                      +.........   ...+..+.+.|+|.+.++...    .+.-.+|.+..++...... .-...+.++|+++++.++.+ +
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt  167 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDT  167 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEET
T ss_pred             eeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeec
Confidence            7544332111   234788999999986665432    2344566666666544443 33456789999999876555 4


Q ss_pred             CCCcEEEEECCCCce-----eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEE
Q psy8448         255 SDGTVKMWNLKTTEC-----TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFL  329 (482)
Q Consensus       255 ~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~  329 (482)
                      ..+.|..|++.....     ...+............+++..+| ++.++.-..+.|..||.+|+.+..+...   ...++
T Consensus       168 ~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~G~~~~~i~lP---~~~~T  243 (295)
T d2ghsa1         168 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNHIARYEVP---GKQTT  243 (295)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCEEEEEECS---CSBEE
T ss_pred             ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecCCCcEeeEecCC---CCceE
Confidence            577899888753211     11222222344567889999988 7888777889999999999999888764   34689


Q ss_pred             EEEEc-CCCCEEEEEe
Q psy8448         330 CCTTS-PRGEWIYCVG  344 (482)
Q Consensus       330 ~~~~~-~~g~~l~~~~  344 (482)
                      +++|- +|.+.|+..+
T Consensus       244 ~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         244 CPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEEEESTTSCEEEEEE
T ss_pred             EEEEeCCCCCEEEEEE
Confidence            99995 6766666443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.73  E-value=2e-05  Score=67.81  Aligned_cols=187  Identities=14%  Similarity=0.102  Sum_probs=124.0

Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEeec
Q psy8448         155 SLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       155 ~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  233 (482)
                      +..|.+....|.-.. ..+.|..||..+++.. .+  .....+.++++.+++.+++ ++.+ .|.++|..+++.......
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~--~~~~~~~~i~~~~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEECS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE--ECCCCcEEEEEecCCCEEE-EEeC-ccEEeecccceeeEEeee
Confidence            456887555555544 6788999999887653 33  2345688999998886555 4544 588999988875433221


Q ss_pred             ----cccceeEEEEcCCCCEEEEEeC----CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeE
Q psy8448         234 ----HSSFVNDITFTADGHSVLSASS----DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTV  305 (482)
Q Consensus       234 ----~~~~i~~l~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i  305 (482)
                          ....++.+.+.|+|++.++...    .+.-.+|.+..++......    .-...+.++|++++..++++-+..+.|
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~----~~~~~Ng~~~s~d~~~l~~~dt~~~~I  172 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA----DISIPNSICFSPDGTTGYFVDTKVNRL  172 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE----EESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee----ccCCcceeeecCCCceEEEeeccccee
Confidence                1235789999999997665432    2345677776776544443    223457899999996677777888999


Q ss_pred             EEEEcCCc------EEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         306 VIMNMQGQ------IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       306 ~i~d~~~~------~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ..|+++..      ....+............++++.+|++.++.-..+.|.
T Consensus       173 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~  223 (295)
T d2ghsa1         173 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD  223 (295)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             eEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceE
Confidence            99987321      1111111111245567899999999888877888888

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.6e-06  Score=78.55  Aligned_cols=242  Identities=12%  Similarity=0.170  Sum_probs=134.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeecccccccc-cccccc---------ccEEEEEEcCCCCEEEEEe
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQD-NFMLME---------EAVMSLAYSRDSEMLASGS  169 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~h~---------~~i~~l~~~~~~~~l~~~~  169 (482)
                      ...+....|||||+.||... ++.|.+.+..++............ .+.+..         ..-.++.|||||++||...
T Consensus       113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            34456688999999999876 677999988776654433221111 111111         1125788999999999875


Q ss_pred             CC-Cc---------------------------------EEEEEcCCCeEeEEee-----cccCCCeEEEEEccCCCEEEE
Q psy8448         170 QS-GK---------------------------------VKIWKIATGQCLRKLE-----KAHSLGVTCIQFSRDNSQILT  210 (482)
Q Consensus       170 ~d-g~---------------------------------i~iwd~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~l~~  210 (482)
                      .| ..                                 +.++|+.++.......     ......+..+.|+++++.++.
T Consensus       192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~  271 (465)
T d1xfda1         192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT  271 (465)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred             ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEE
Confidence            32 22                                 3444444333221110     011223678899998876555


Q ss_pred             EEC-C---CeEEEEeCCCCceEEEeecc-ccce----eEEEEcCCCCEEEE--Ee-CCC--cEEEEECC------CCcee
Q psy8448         211 ASF-D---TYVRIHGLKSGKMLKEFRGH-SSFV----NDITFTADGHSVLS--AS-SDG--TVKMWNLK------TTECT  270 (482)
Q Consensus       211 ~~~-d---g~i~i~d~~~~~~~~~~~~~-~~~i----~~l~~~~~~~~l~~--~~-~dg--~i~i~d~~------~~~~~  270 (482)
                      ... +   ..|.++|..++++...+... .+.|    ....|+++|+.++.  .+ .+|  .+..+++.      .+...
T Consensus       272 ~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~  351 (465)
T d1xfda1         272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI  351 (465)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred             EEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCcee
Confidence            432 2   26888999999876555432 2222    34678899885432  22 233  34444432      12222


Q ss_pred             eeeeccCCCccceeEE-EEcCCCCCEEEEEeCCC--eEEEEE--cCCcEE-EEecCCcccCcCEEEEEEcCCCCEEEEEe
Q psy8448         271 STFKSLGASDIAVNSI-HLLPKNTEHFVVCNKTN--TVVIMN--MQGQIV-RSLSSGKREGGDFLCCTTSPRGEWIYCVG  344 (482)
Q Consensus       271 ~~~~~~~~~~~~v~~i-~~~~~~~~~l~~~~~d~--~i~i~d--~~~~~~-~~~~~~~~~~~~v~~~~~~~~g~~l~~~~  344 (482)
                      ..+.   ...-.|..+ .|.+++..+++++..++  .-.+|.  +.+... ..+...........++.|||++++++..+
T Consensus       352 ~~LT---~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~  428 (465)
T d1xfda1         352 QSIT---SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (465)
T ss_dssp             CBSC---CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             EEec---cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence            2222   334456665 58888766666776542  333444  444322 22221112244567899999999988554


Q ss_pred             C
Q psy8448         345 E  345 (482)
Q Consensus       345 ~  345 (482)
                      .
T Consensus       429 s  429 (465)
T d1xfda1         429 E  429 (465)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.70  E-value=1.4e-06  Score=74.63  Aligned_cols=220  Identities=11%  Similarity=0.068  Sum_probs=122.0

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC-C-----CcEEEEE
Q psy8448         107 RFSPD--GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ-S-----GKVKIWK  178 (482)
Q Consensus       107 ~~s~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~-d-----g~i~iwd  178 (482)
                      ..|||  |+.+|..+ +|.|.+.|+.+++......         +...+...+|||||++||.... +     ..|.+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~---------~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~   74 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVS---------NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN   74 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEEC---------SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEec---------CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEE
Confidence            35788  99988765 5679999999887543222         2456888999999999987642 2     2477778


Q ss_pred             cCCCeEeEEeec-----ccCCCeEEEEEccCCCEEEEEECC------CeEEEEeCCCCceEEEeeccccceeEEEEcCCC
Q psy8448         179 IATGQCLRKLEK-----AHSLGVTCIQFSRDNSQILTASFD------TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADG  247 (482)
Q Consensus       179 ~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~  247 (482)
                      ..+++.......     .........+|+|+|+.|+.....      ..+...+...+.....   +........+.+.+
T Consensus        75 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  151 (281)
T d1k32a2          75 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGR  151 (281)
T ss_dssp             TTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTE
T ss_pred             ecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCC
Confidence            777765443211     112345778999999998876432      2355556554443222   22223333333333


Q ss_pred             CEEEEEeCCC-----------cEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCcE
Q psy8448         248 HSVLSASSDG-----------TVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT--NTVVIMNMQGQI  314 (482)
Q Consensus       248 ~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--~~i~i~d~~~~~  314 (482)
                      ..++....+.           ................    ..........+.++  .++.....+  ..|.++|++++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~  225 (281)
T d1k32a2         152 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV----DMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKD  225 (281)
T ss_dssp             EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE----CCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCS
T ss_pred             eEEEeeccccceeeeeccCCcceeeeeccccceeecc----CCccccceeeeecc--ccceecccccccceEEEeCCCCc
Confidence            3333222211           1112222222211111    22233344555554  334444333  457777887776


Q ss_pred             EEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         315 VRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       315 ~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ...+....  ...+  ..|+|||+.|+.. .++.|+
T Consensus       226 ~~~lt~~~--~~~~--~~~SpDG~~I~f~-~~~~l~  256 (281)
T d1k32a2         226 LRKHTSFT--DYYP--RHLNTDGRRILFS-KGGSIY  256 (281)
T ss_dssp             CEECCCCC--SSCE--EEEEESSSCEEEE-ETTEEE
T ss_pred             eEEeecCC--Cccc--ccCcCCCCEEEEE-eCCEEE
Confidence            66665432  2233  4689999998864 457777

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.60  E-value=9.5e-05  Score=64.62  Aligned_cols=234  Identities=12%  Similarity=0.093  Sum_probs=150.0

Q ss_pred             EEEEeCCCeEEEEecCCCceeecccccccccccc------------------------------c---cccEEEEEEcC-
Q psy8448         115 LITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFML------------------------------M---EEAVMSLAYSR-  160 (482)
Q Consensus       115 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~------------------------------h---~~~i~~l~~~~-  160 (482)
                      +.+|+..|.|+|+-+.+++.+..+..-......+                              +   +..=..+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            4678889999999998888776553211100000                              0   00112455544 


Q ss_pred             --CCCEEEEEe-CCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc--CCCEEEEEECC------------------CeE
Q psy8448         161 --DSEMLASGS-QSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR--DNSQILTASFD------------------TYV  217 (482)
Q Consensus       161 --~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d------------------g~i  217 (482)
                        ||++|++.. .+..|.+.|+.+.+....+..+....+..+...+  +..+++.++.+                  +.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              788888876 6789999999999987766555666777777654  55677777653                  236


Q ss_pred             EEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q psy8448         218 RIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDG--------------------------------------TV  259 (482)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg--------------------------------------~i  259 (482)
                      .++|..+.+....+.- .+....+.++++|+++++.+.+.                                      .+
T Consensus       176 t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            7889998887776653 34567899999999999887431                                      12


Q ss_pred             EEEECCCC---ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-------c------EEEEecCCcc
Q psy8448         260 KMWNLKTT---ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQG-------Q------IVRSLSSGKR  323 (482)
Q Consensus       260 ~i~d~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-------~------~~~~~~~~~~  323 (482)
                      .+.|.+..   .....+.    -......+..+|+|..+++++..+.++.++|++.       +      ......    
T Consensus       255 ~VVD~~~~~~~~v~~yIP----VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e----  326 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----  326 (459)
T ss_dssp             EEEECSGG--CSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB----
T ss_pred             eeecccccCCcceeEEEe----cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc----
Confidence            33333321   1111111    1223457899999966666677889999999841       1      111111    


Q ss_pred             cCcCEEEEEEcCCCCEEEEEeCCcEEEEEeehhh
Q psy8448         324 EGGDFLCCTTSPRGEWIYCVGEDMVLVVRLIQQY  357 (482)
Q Consensus       324 ~~~~v~~~~~~~~g~~l~~~~~dg~i~iw~~~~~  357 (482)
                      .......-+|+.+|.-..+---|..|.-|++...
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence            1334467889988865556668999998877644

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.33  E-value=6.2e-05  Score=65.79  Aligned_cols=226  Identities=10%  Similarity=0.118  Sum_probs=141.8

Q ss_pred             EEEEcC---CCCEEEEEe-CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeCC-------
Q psy8448         105 CARFSP---DGQYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQS-------  171 (482)
Q Consensus       105 ~~~~s~---~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~d-------  171 (482)
                      .+.+..   ||++|+... .+.+|-+-|+.+.+..+.+..+.       ...+..+...+  +-.|++..+.+       
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn-------~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd  161 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-------AKGIHGLRPQKWPRSNYVFCNGEDETPLVND  161 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-------CCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCC-------CCCCceeecccCCCeEEEEccCccccccCCC
Confidence            455654   899998776 67899999999988766554432       24566666654  45577776653       


Q ss_pred             -----------CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCC---------------eE--------
Q psy8448         172 -----------GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDT---------------YV--------  217 (482)
Q Consensus       172 -----------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---------------~i--------  217 (482)
                                 +.+.++|..+.+...++.  -......+.++++|+++++.+.+.               .+        
T Consensus       162 g~~l~d~~~y~~~~t~ID~~tm~V~~QV~--V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~ri  239 (459)
T d1fwxa2         162 GTNMEDVANYVNVFTAVDADKWEVAWQVL--VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI  239 (459)
T ss_dssp             SSSTTCGG-EEEEEEEEETTTTEEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred             CccccchhhcceEEEEEecCCceEEEEee--eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHh
Confidence                       236788999888877764  334567899999999999887541               23        


Q ss_pred             ---------------EEEeCCCC---ceEEEeeccccceeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcee--------
Q psy8448         218 ---------------RIHGLKSG---KMLKEFRGHSSFVNDITFTADGHSVLSASS-DGTVKMWNLKTTECT--------  270 (482)
Q Consensus       218 ---------------~i~d~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~--------  270 (482)
                                     .+.|.+..   ..+..+. -......+.++|||+++++++. +.++.++|++.....        
T Consensus       240 e~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~  318 (459)
T d1fwxa2         240 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  318 (459)
T ss_dssp             HHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GG
T ss_pred             HHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcc
Confidence                           33333321   1111222 2233567899999999887764 889999999742111        


Q ss_pred             eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC-----------CcEEEEecCCcccCcCEEEE------EE
Q psy8448         271 STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ-----------GQIVRSLSSGKREGGDFLCC------TT  333 (482)
Q Consensus       271 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~-----------~~~~~~~~~~~~~~~~v~~~------~~  333 (482)
                      ..+.........-...+|...| ..+.+---|..|.-|++.           ...+..+..+-    .+-.+      ..
T Consensus       319 ~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y----~~gh~~~~~g~t~  393 (459)
T d1fwxa2         319 SAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY----QPGHLKTVMGETL  393 (459)
T ss_dssp             GGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS----CEEEEEETTTTST
T ss_pred             ccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecchhhhhhccccCCcceecccccc----CCCCCccCcCCcC
Confidence            1111001122334567788877 666667789999999983           12344444321    11222      23


Q ss_pred             cCCCCEEEEEeC
Q psy8448         334 SPRGEWIYCVGE  345 (482)
Q Consensus       334 ~~~g~~l~~~~~  345 (482)
                      .|+|++|++...
T Consensus       394 ~~dgk~l~~~nk  405 (459)
T d1fwxa2         394 DATNDWLVCLSK  405 (459)
T ss_dssp             TCCSSEEEEEES
T ss_pred             CCCCCEEEEecc
Confidence            689999998763

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.32  E-value=5.4e-05  Score=64.29  Aligned_cols=109  Identities=11%  Similarity=0.128  Sum_probs=73.6

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEEC-C-----CeEEEEeCCCCceE
Q psy8448         157 AYSRD--SEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASF-D-----TYVRIHGLKSGKML  228 (482)
Q Consensus       157 ~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~  228 (482)
                      ..+|+  |+.++..+ +|.|.+.|+.+++..+ + ..+...+...+|+|||+.|+.... +     ..|.+++..+++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-L-t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-I-VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-E-ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-E-ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            35788  99888775 4578899998877644 4 346667889999999999986542 2     24888888777654


Q ss_pred             EEee------ccccceeEEEEcCCCCEEEEEeCC------CcEEEEECCCCc
Q psy8448         229 KEFR------GHSSFVNDITFTADGHSVLSASSD------GTVKMWNLKTTE  268 (482)
Q Consensus       229 ~~~~------~~~~~i~~l~~~~~~~~l~~~~~d------g~i~i~d~~~~~  268 (482)
                      ....      ..........|+|+++.|+.....      ..+...+...+.
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence            4221      122345678999999988875432      224555555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.31  E-value=9.7e-05  Score=66.15  Aligned_cols=161  Identities=9%  Similarity=0.046  Sum_probs=97.7

Q ss_pred             EEEEEcCCCCEEEEEeCCC-----------eEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-
Q psy8448         104 ECARFSPDGQYLITGSVDG-----------FIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-  171 (482)
Q Consensus       104 ~~~~~s~~~~~l~s~~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-  171 (482)
                      .......+|++++.|+.+.           .+.+||..+++.........     .|.......++.+++++++.|+.+ 
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-----~~~~~~~~~~~~~~g~i~v~Gg~~~   97 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-----KHDMFCPGISMDGNGQIVVTGGNDA   97 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-----SCCCSSCEEEECTTSCEEEECSSST
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC-----CcccceeEEEEecCCcEEEeecCCC
Confidence            3344556889998887431           37799999887543222111     112234456788999988888755 


Q ss_pred             CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC------CeEEEEeCCCCceEEEee---------ccc-
Q psy8448         172 GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD------TYVRIHGLKSGKMLKEFR---------GHS-  235 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~---------~~~-  235 (482)
                      ..+.+||..+......-.......-..++..+|++.++.++.+      ..+.+||..+.+-...-.         .+. 
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  177 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  177 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccc
Confidence            5899999988765432211222233456777899988888753      368999998765322100         000 


Q ss_pred             ----cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy8448         236 ----SFVNDITFTADGHSVLSASSDGTVKMWNLKTTEC  269 (482)
Q Consensus       236 ----~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~  269 (482)
                          ..-..+...++++.++.+...+.+.++|..+...
T Consensus       178 ~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         178 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence                0011123345677777777777788888776653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=0.00091  Score=55.80  Aligned_cols=225  Identities=10%  Similarity=0.036  Sum_probs=136.8

Q ss_pred             CEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEeEEeecc
Q psy8448         113 QYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQCLRKLEKA  191 (482)
Q Consensus       113 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  191 (482)
                      .+|+.+. .+.|+-.+++.........   ...+..+...+.+++|.+..+.|..+. .++.|+..++..+.....+ ..
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~---~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-~~   76 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEA---KAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQ   76 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGC---EEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CT
T ss_pred             CEEEEeC-CCeEEEEECCCcccccccc---ccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-Ee
Confidence            3455444 3567777775443221111   011111234578899998777777664 5677888888765544444 33


Q ss_pred             cCCCeEEEEEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q psy8448         192 HSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSD---GTVKMWNLKTT  267 (482)
Q Consensus       192 ~~~~v~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d---g~i~i~d~~~~  267 (482)
                      ....+..+++..-+..|..+ ...+.|.+.++........+......+..++++|...+++.....   +.|..-++...
T Consensus        77 ~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~  156 (263)
T d1npea_          77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (263)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC
Confidence            34568899998766666544 456799999987655433333334668899999988877755432   23555566544


Q ss_pred             ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEe-CC
Q psy8448         268 ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVG-ED  346 (482)
Q Consensus       268 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~-~d  346 (482)
                      .......   ..-.....+++.+.+..++.+-...+.|...+++|.....+...   ......+++.  +.+|+... ..
T Consensus       157 ~~~~i~~---~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~---~~~P~~lav~--~~~lYwtd~~~  228 (263)
T d1npea_         157 NRRILAQ---DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKT  228 (263)
T ss_dssp             CCEEEEC---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTT
T ss_pred             Cceeeee---ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC---CCCcEEEEEE--CCEEEEEECCC
Confidence            3322221   22335578999988755556666788999999987766555433   2234567775  45565444 55


Q ss_pred             cEEE
Q psy8448         347 MVLV  350 (482)
Q Consensus       347 g~i~  350 (482)
                      +.|.
T Consensus       229 ~~I~  232 (263)
T d1npea_         229 NSVI  232 (263)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            6666

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=0.0013  Score=54.87  Aligned_cols=208  Identities=9%  Similarity=0.032  Sum_probs=132.8

Q ss_pred             CCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCcEE
Q psy8448          98 GSKSHVECARFSPDGQYLITG-SVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGKVK  175 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~i~  175 (482)
                      .+...+..++|.+..+.|.-. ..++.|+..+++.+.....+...        -..+.++++..-+..|..+ ...+.|.
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~--------~~~p~~iAvD~~~~~lY~~d~~~~~I~  104 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--------LGSPEGIALDHLGRTIFWTDSQLDRIE  104 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT--------CCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec--------cccccEEEEeccCCeEEEeccCCCEEE
Confidence            445568889999877766655 45678888888765443322221        2457889998756666555 4567999


Q ss_pred             EEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC---CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEE
Q psy8448         176 IWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD---TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLS  252 (482)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  252 (482)
                      +.++........+ .........+++.|...+++.....   ..|.--++............-....+|++++.++.|..
T Consensus       105 ~~~~dg~~~~~l~-~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         105 VAKMDGTQRRVLF-DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             EEETTSCSCEEEE-CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             EEecCCceEEEEe-cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEE
Confidence            9998755433323 3334568899999977777655433   23555566544333333333356789999988887766


Q ss_pred             Ee-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEecC
Q psy8448         253 AS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLSS  320 (482)
Q Consensus       253 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~  320 (482)
                      +. ..+.|...|+........+.   +...+ .++++.  +..++.+-...+.|...|. .++....+..
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~v~~---~~~~P-~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~  247 (263)
T d1npea_         184 VDAGTHRAECLNPAQPGRRKVLE---GLQYP-FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (263)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEE---CCCSE-EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             EeCCCCEEEEEECCCCCeEEEEC---CCCCc-EEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECC
Confidence            64 56789999987655433333   22223 467775  3256666667788999998 5666655543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=0.0014  Score=54.82  Aligned_cols=222  Identities=11%  Similarity=0.030  Sum_probs=134.4

Q ss_pred             EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCe---EeEEee
Q psy8448         114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS-QSGKVKIWKIATGQ---CLRKLE  189 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~---~~~~~~  189 (482)
                      +|+.+.. ..|+-.++.+......+.         ....+.+++|.+..+.|.-.. .++.|.-.++....   ....+.
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~---------~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~   72 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIP---------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI   72 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC---------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeC---------CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE
Confidence            3444432 458888887655333221         134678999999888777765 45667766664322   122221


Q ss_pred             cccCCCeEEEEEccCCCEEEEE-ECCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEe--CCCcEEEEECCC
Q psy8448         190 KAHSLGVTCIQFSRDNSQILTA-SFDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSAS--SDGTVKMWNLKT  266 (482)
Q Consensus       190 ~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~dg~i~i~d~~~  266 (482)
                      ......+..+++.+.+..|..+ ...+.|.+.++........+.........++++|...+|....  ..+.|...++..
T Consensus        73 ~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          73 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (266)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC
Confidence            2333456788998766666555 4567899999987665555555566789999999776666554  345677777765


Q ss_pred             CceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEE-eC
Q psy8448         267 TECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV-GE  345 (482)
Q Consensus       267 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~-~~  345 (482)
                      ........   ..-.....+++.+.+..++.+-...+.|...+++|.....+............+++.  +.+|+.. ..
T Consensus       153 s~~~~l~~---~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~  227 (266)
T d1ijqa1         153 VDIYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDII  227 (266)
T ss_dssp             CCEEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred             Cceecccc---cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECC
Confidence            44333222   223456789999887556666677789999999765433332222213345667776  3455544 45


Q ss_pred             CcEEE
Q psy8448         346 DMVLV  350 (482)
Q Consensus       346 dg~i~  350 (482)
                      ++.|+
T Consensus       228 ~~~I~  232 (266)
T d1ijqa1         228 NEAIF  232 (266)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            67766

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.96  E-value=0.0014  Score=58.25  Aligned_cols=239  Identities=11%  Similarity=0.032  Sum_probs=128.0

Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCC-CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC------
Q psy8448          99 SKSHVECARFSPDGQYLITGSVD-GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS------  171 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d------  171 (482)
                      |.......++.++|++++.|+.+ ..+.+||..+..-...-....       ...-...+..++++.++.++.+      
T Consensus        74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~-------~r~~~~~~~~~dG~v~v~GG~~~~~~~~  146 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-------ARGYQSSATMSDGRVFTIGGSWSGGVFE  146 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-------CCSSCEEEECTTSCEEEECCCCCSSSCC
T ss_pred             cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccc-------cccccceeeecCCceeeecccccccccc
Confidence            33333456788999999988755 589999998776543222221       1122356677799988888743      


Q ss_pred             CcEEEEEcCCCeEeEEee--cc------cC-----CCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee--c---
Q psy8448         172 GKVKIWKIATGQCLRKLE--KA------HS-----LGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR--G---  233 (482)
Q Consensus       172 g~i~iwd~~~~~~~~~~~--~~------~~-----~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~---  233 (482)
                      ..+.+||..+++....-.  ..      +.     ..-..+...++++.++.+...+.+.+++..+........  .   
T Consensus       147 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (387)
T d1k3ia3         147 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG  226 (387)
T ss_dssp             CCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred             ceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcc
Confidence            368999988775432110  00      00     001112233467777777777788888877665332211  0   


Q ss_pred             -ccc--ceeEEEE-cCCCCEEEEEeCC--------CcEEEEECCCCc---eeeeeeccCCCccceeEEEEcCCCCCEEEE
Q psy8448         234 -HSS--FVNDITF-TADGHSVLSASSD--------GTVKMWNLKTTE---CTSTFKSLGASDIAVNSIHLLPKNTEHFVV  298 (482)
Q Consensus       234 -~~~--~i~~l~~-~~~~~~l~~~~~d--------g~i~i~d~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~  298 (482)
                       +..  .-.++.+ ..+++.++.|+..        ....+.++....   ..............-.+....+++ +++++
T Consensus       227 ~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg-~i~v~  305 (387)
T d1k3ia3         227 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG-STFIT  305 (387)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTS-CEEEE
T ss_pred             cCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCC-eEEEE
Confidence             110  1112222 2356666666532        123444433211   111111000112223355666777 78888


Q ss_pred             EeCC-----------CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         299 CNKT-----------NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       299 ~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                      |+.+           .++.+||........+.........-....+.+||+.++.|+.
T Consensus       306 GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         306 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence            7743           1478899865555555433221111133456899999999884

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=0.0042  Score=51.18  Aligned_cols=229  Identities=10%  Similarity=0.142  Sum_probs=144.5

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-e
Q psy8448         105 CARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATG-Q  183 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~-~  183 (482)
                      +.-.+|..+.||.-+ ..++.|+|+++.+.++.+...         ++|.--.|-.+. .|+..+. ..|+-|+++.. .
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~---------e~VvfWkWis~~-~L~lVT~-taVYHW~~~g~s~  134 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQ  134 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------SCCCEEEESSSS-EEEEECS-SEEEEEESSSSCC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC---------CCcEEEEecCCC-EEEEEcC-CceEEEcccCCCC
Confidence            344689888888766 568999999999888777655         567777887554 5666654 48999999543 3


Q ss_pred             EeEEeeccc---CCCeEEEEEccCCCEEEEEE-------CCCeEEEEeCCCCceEEEeeccccceeEEEEcCC--C-CEE
Q psy8448         184 CLRKLEKAH---SLGVTCIQFSRDNSQILTAS-------FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTAD--G-HSV  250 (482)
Q Consensus       184 ~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~--~-~~l  250 (482)
                      +...+....   ...|..-..+++.++++..+       -.|.+.+|..+.+ .-+.+.+|-+.-..+.+..+  . ..+
T Consensus       135 P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf  213 (327)
T d1utca2         135 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLF  213 (327)
T ss_dssp             CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEE
T ss_pred             chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEE
Confidence            444443221   23466667788888876543       2367889997654 44566666554444433211  1 122


Q ss_pred             EEE---eCCCcEEEEECCCCc---e------eeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEE
Q psy8448         251 LSA---SSDGTVKMWNLKTTE---C------TSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRS  317 (482)
Q Consensus       251 ~~~---~~dg~i~i~d~~~~~---~------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  317 (482)
                      +.+   ...+++++.++....   .      ...+.+......-..++..++.. .+++.-+.-|.+++||+ ++..+..
T Consensus       214 ~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky-giiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         214 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             EEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccC-CEEEEEecCcEEEEEEcccccEEEE
Confidence            222   223689999986532   1      11111111223334567888877 79999999999999999 6777666


Q ss_pred             ecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         318 LSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       318 ~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      -.-.   ...|-..+-+.+..-+++...+|.+.
T Consensus       293 nRIs---~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         293 NRIS---GETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EECC---SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             eecC---CCceEEeccCCCCceEEEECCCCeEE
Confidence            5543   45565555555655666677888776

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.79  E-value=0.0081  Score=56.10  Aligned_cols=156  Identities=10%  Similarity=0.088  Sum_probs=94.9

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe------CCCcEEEEEcCCCeEe
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS------QSGKVKIWKIATGQCL  185 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~  185 (482)
                      +..++.++.||.+.-.|.++|+............    ...++.--.-.++ .++.+.      .+|.|.-+|+.+|+.+
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~----~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV----GSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG----TCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhcccccccccc----ccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEE
Confidence            3467778889999999999999765543321110    0011100011133 444544      3678999999999998


Q ss_pred             EEeeccc------------------------------------CCCe-EEEEEccCCCEEEEEEC---------------
Q psy8448         186 RKLEKAH------------------------------------SLGV-TCIQFSRDNSQILTASF---------------  213 (482)
Q Consensus       186 ~~~~~~~------------------------------------~~~v-~~i~~~~~~~~l~~~~~---------------  213 (482)
                      .++....                                    ...+ ...++.++...++.+..               
T Consensus       190 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~  269 (571)
T d2ad6a1         190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccc
Confidence            8763211                                    0111 23456666666665543               


Q ss_pred             -CCeEEEEeCCCCceEEEeecccccee---------EEEEcCCCC---EEEEEeCCCcEEEEECCCCceeee
Q psy8448         214 -DTYVRIHGLKSGKMLKEFRGHSSFVN---------DITFTADGH---SVLSASSDGTVKMWNLKTTECTST  272 (482)
Q Consensus       214 -dg~i~i~d~~~~~~~~~~~~~~~~i~---------~l~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~  272 (482)
                       ...+...|+++++.+..++.....+.         ......+++   .++.++.+|.+.++|.++++.+..
T Consensus       270 ~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence             24688899999999887764322221         122222443   456788999999999999987644

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.61  E-value=0.0069  Score=56.87  Aligned_cols=155  Identities=11%  Similarity=0.101  Sum_probs=96.4

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEeC------CCcEEEEEcCCCe
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGSQ------SGKVKIWKIATGQ  183 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~~------dg~i~iwd~~~~~  183 (482)
                      +.+++.++.|+.|.-.|.++|+....+........    ..++   -.|  .+..++++..      .|.|+-+|..+|+
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~----~~~t---~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~  193 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVG----STLT---IAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE  193 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT----CBCC---SCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccc----cccc---cCCcEECCeEEEeeccccccccCceEEEECCCCc
Confidence            34688889999999999999998776543211110    0111   111  1345555543      4899999999999


Q ss_pred             EeEEeeccc-------------------------------------CCCeEEEEEccCCCEEEEEEC-------------
Q psy8448         184 CLRKLEKAH-------------------------------------SLGVTCIQFSRDNSQILTASF-------------  213 (482)
Q Consensus       184 ~~~~~~~~~-------------------------------------~~~v~~i~~~~~~~~l~~~~~-------------  213 (482)
                      .+.++....                                     ...-..+++.+....+..+..             
T Consensus       194 ~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~  273 (596)
T d1w6sa_         194 QVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGD  273 (596)
T ss_dssp             EEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred             EEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccc
Confidence            998764211                                     001123456666666665543             


Q ss_pred             ---CCeEEEEeCCCCceEEEeecccc---------ceeEEEE-cCCC---CEEEEEeCCCcEEEEECCCCceeeee
Q psy8448         214 ---DTYVRIHGLKSGKMLKEFRGHSS---------FVNDITF-TADG---HSVLSASSDGTVKMWNLKTTECTSTF  273 (482)
Q Consensus       214 ---dg~i~i~d~~~~~~~~~~~~~~~---------~i~~l~~-~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~  273 (482)
                         ...|.-.|+++++.+..++....         .+..+.. ..++   ..++..+.+|.+.++|..+++.+...
T Consensus       274 n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         274 NKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             CTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence               24588899999998887653221         1112221 2244   35777888999999999999877543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.55  E-value=0.017  Score=53.66  Aligned_cols=158  Identities=13%  Similarity=0.112  Sum_probs=93.7

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEe------CCCcEEEEEcCCCeEe
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGS------QSGKVKIWKIATGQCL  185 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~  185 (482)
                      +..++.+..++.|.-.|..+|+....................  + +  .+..++.+.      ..|.|.-+|.++++.+
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p--~-v--~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~  191 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP--R-V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLA  191 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC--E-E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeee--e-e--ecCcccccccceeccccceEEEEECCCceEE
Confidence            446777888999999999999887655432211100000000  0 0  122344433      2367999999999999


Q ss_pred             EEeecccC-----------------------------CC-eEEEEEccCCCEEEEEEC-------------------CCe
Q psy8448         186 RKLEKAHS-----------------------------LG-VTCIQFSRDNSQILTASF-------------------DTY  216 (482)
Q Consensus       186 ~~~~~~~~-----------------------------~~-v~~i~~~~~~~~l~~~~~-------------------dg~  216 (482)
                      .++.....                             .. -..+++.+....++.+..                   ...
T Consensus       192 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~s  271 (560)
T d1kv9a2         192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS  271 (560)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             eeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCcccccee
Confidence            88742211                             01 112456666666654432                   246


Q ss_pred             EEEEeCCCCceEEEeecccccee---------EEEEcCCC---CEEEEEeCCCcEEEEECCCCceeeeee
Q psy8448         217 VRIHGLKSGKMLKEFRGHSSFVN---------DITFTADG---HSVLSASSDGTVKMWNLKTTECTSTFK  274 (482)
Q Consensus       217 i~i~d~~~~~~~~~~~~~~~~i~---------~l~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  274 (482)
                      |.-.|+++++....++.....+.         -+....++   ..++.++.+|.+.++|..+++.+...+
T Consensus       272 ivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~  341 (560)
T d1kv9a2         272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (560)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             eEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccc
Confidence            78889999998877654332221         12222233   356678889999999999998775543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.54  E-value=0.013  Score=54.81  Aligned_cols=208  Identities=13%  Similarity=0.103  Sum_probs=118.8

Q ss_pred             CCCEEEEEeCCCeEEEEec-CCCceeecccccccccccc---ccccEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCC
Q psy8448         111 DGQYLITGSVDGFIEVWNF-TTGKIRKDLKYQAQDNFML---MEEAVMSLAYSRD----SEMLASGSQSGKVKIWKIATG  182 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~---h~~~i~~l~~~~~----~~~l~~~~~dg~i~iwd~~~~  182 (482)
                      +|.+.++++.++.|...|. .+|+.+-++..........   ....-..+++.++    ..+++.++.|+.|.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            3444444444567777776 4787776554322111100   0011133445442    346888999999999999999


Q ss_pred             eEeEEeecccCCCeEEEEEcc--CCCEEEEEEC------CCeEEEEeCCCCceEEEeeccc-------------------
Q psy8448         183 QCLRKLEKAHSLGVTCIQFSR--DNSQILTASF------DTYVRIHGLKSGKMLKEFRGHS-------------------  235 (482)
Q Consensus       183 ~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~-------------------  235 (482)
                      +....+.......-..+.-.|  -+..++++..      .|.|+-+|+++|+.+.++....                   
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g  221 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccc
Confidence            998887422111100111111  1345565543      4899999999999988764210                   


Q ss_pred             ------------------c-ceeEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeeeeeccCCC-
Q psy8448         236 ------------------S-FVNDITFTADGHSVLSASSD----------------GTVKMWNLKTTECTSTFKSLGAS-  279 (482)
Q Consensus       236 ------------------~-~i~~l~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~~-  279 (482)
                                        . .-..+++++...++..+..+                ..|.-.|+++++.+-.++..... 
T Consensus       222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~  301 (596)
T d1w6sa_         222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (596)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccc
Confidence                              0 11245667777777665433                34778899999988777643210 


Q ss_pred             -----ccceeEEEE-cCCC--CCEEEEEeCCCeEEEEEc-CCcEEEEe
Q psy8448         280 -----DIAVNSIHL-LPKN--TEHFVVCNKTNTVVIMNM-QGQIVRSL  318 (482)
Q Consensus       280 -----~~~v~~i~~-~~~~--~~~l~~~~~d~~i~i~d~-~~~~~~~~  318 (482)
                           .....-+.. ..++  ...++....+|.+.++|. +|+.+...
T Consensus       302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence                 111111111 2223  246777888999999998 67766543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.50  E-value=0.0071  Score=56.49  Aligned_cols=194  Identities=13%  Similarity=0.036  Sum_probs=112.7

Q ss_pred             EEEEcCCCCEEEEEeC----------------CCeEEEEecCCCceeeccccccccccc-cccccEEEEEEcCCCC---E
Q psy8448         105 CARFSPDGQYLITGSV----------------DGFIEVWNFTTGKIRKDLKYQAQDNFM-LMEEAVMSLAYSRDSE---M  164 (482)
Q Consensus       105 ~~~~s~~~~~l~s~~~----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~-~h~~~i~~l~~~~~~~---~  164 (482)
                      ..++.+...++..+..                ...+.-.|.++|+..-.++........ .............+++   .
T Consensus       239 ~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~  318 (571)
T d2ad6a1         239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL  318 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred             ccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccc
Confidence            3466676666665543                346788899999877655543322110 0011222222223443   4


Q ss_pred             EEEEeCCCcEEEEEcCCCeEeEEeecccC------------------------------------CC--eEEEEEccCCC
Q psy8448         165 LASGSQSGKVKIWKIATGQCLRKLEKAHS------------------------------------LG--VTCIQFSRDNS  206 (482)
Q Consensus       165 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------------------~~--v~~i~~~~~~~  206 (482)
                      ++.++.+|.+.++|.++++.+........                                    +.  -...+++|+..
T Consensus       319 v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~  398 (571)
T d2ad6a1         319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             eeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCc
Confidence            67788999999999999987654211000                                    00  01256677666


Q ss_pred             EEEEEECC-------------------------------------CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCE
Q psy8448         207 QILTASFD-------------------------------------TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHS  249 (482)
Q Consensus       207 ~l~~~~~d-------------------------------------g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~  249 (482)
                      .+++...+                                     |.|.-+|+++++.+.+.... .+..+-...-.+.+
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~Taggl  477 (571)
T d2ad6a1         399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGL  477 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTE
T ss_pred             eEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCC-CCCCcceeEecCCE
Confidence            66543322                                     46778888888887766522 11111111224667


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC
Q psy8448         250 VLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK  301 (482)
Q Consensus       250 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~  301 (482)
                      +++++.||.++.+|.++|+.+-.+.....  ..-.-+.|..+|..++++...
T Consensus       478 Vf~G~~dg~l~A~Da~tGe~lW~~~l~~~--~~a~P~ty~~dGkqYi~v~~g  527 (571)
T d2ad6a1         478 VWYATLDGYLKALDNKDGKELWNFKMPSG--GIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCCEEEEETTEEEEEEEEC
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEECCCC--ceecceEEEECCEEEEEEEec
Confidence            88899999999999999999988864322  122235555677566655443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.033  Score=46.01  Aligned_cols=213  Identities=10%  Similarity=-0.008  Sum_probs=125.2

Q ss_pred             CCCcEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-eCCCcEEE
Q psy8448          99 SKSHVECARFSPDGQYLITGS-VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-SQSGKVKI  176 (482)
Q Consensus        99 h~~~v~~~~~s~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-~~dg~i~i  176 (482)
                      ....+.+++|++..+.|.-.. .++.|.--++............    ....-..+.++++.+.+..|..+ ...+.|.+
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~----~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v  103 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV----ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  103 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE----ECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEE----EeCCCCCcceEEEeeccceEEEEecCCCEEEe
Confidence            445678999999777776554 5566776666432211100000    00012346678888755555555 45678999


Q ss_pred             EEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEE--CCCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEE-
Q psy8448         177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTAS--FDTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSA-  253 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-  253 (482)
                      .++........+ .........++++|...+|....  ..+.|.-.++............-..+.++++++.++.|..+ 
T Consensus       104 ~~~~g~~~~~~~-~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d  182 (266)
T d1ijqa1         104 ADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD  182 (266)
T ss_dssp             EETTSSSEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EecCCceEEEEE-cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEec
Confidence            998766544444 34456688999999666666554  33467777775444333333334567899999988777766 


Q ss_pred             eCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEc-CCcEEEEec
Q psy8448         254 SSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNM-QGQIVRSLS  319 (482)
Q Consensus       254 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~  319 (482)
                      ...+.|...++............ .......++++.. + .++.+-..++.|...+. .+.....+.
T Consensus       183 ~~~~~I~~~~~dG~~~~~~~~~~-~~~~~p~~lav~~-~-~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         183 SKLHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             TTTTEEEEEETTSCSCEEEEECT-TTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CCcCEEEEEECCCCCEEEEEeCC-CcccccEEEEEEC-C-EEEEEECCCCeEEEEECCCCcceEEEE
Confidence            45678999998765433333211 1122345667663 2 55555556777877776 444444443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.29  E-value=0.054  Score=48.36  Aligned_cols=229  Identities=12%  Similarity=0.087  Sum_probs=117.4

Q ss_pred             CCCCcEEEEEEcCCCCEEEEEe-----CCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCC-
Q psy8448          98 GSKSHVECARFSPDGQYLITGS-----VDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQS-  171 (482)
Q Consensus        98 ~h~~~v~~~~~s~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~d-  171 (482)
                      ++.-.+...++||+++++|.+-     ....|+++|+.+++.+.... .        ......++|.++++.|+....+ 
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~--------~~~~~~~~W~~D~~~~~Y~~~~~  192 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-E--------RVKFSCMAWTHDGKGMFYNAYPQ  192 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-E--------EECSCCEEECTTSSEEEEEECCC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-c--------cccccceEEcCCCCEEEEEEecc
Confidence            4444456778999999998542     23479999999998654221 1        1123568899999988765433 


Q ss_pred             ---------------CcEEEEEcCCCeE--eEEeec-ccCCCeEEEEEccCCCEEEEEEC---CCe--EEEEeCCCCce-
Q psy8448         172 ---------------GKVKIWKIATGQC--LRKLEK-AHSLGVTCIQFSRDNSQILTASF---DTY--VRIHGLKSGKM-  227 (482)
Q Consensus       172 ---------------g~i~iwd~~~~~~--~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~---dg~--i~i~d~~~~~~-  227 (482)
                                     ..|..+.+.+...  ...+.. .....+..+..++++++++....   +..  +.+.|+..... 
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~  272 (430)
T d1qfma1         193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (430)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence                           2577777766532  222311 12234667778889998765432   223  44555443211 


Q ss_pred             -------EEEeeccccceeEEEEcCCCCEEEEEe---CCCcEEEEECCCCcee--eeeeccCCCccceeEEEEcCCCCCE
Q psy8448         228 -------LKEFRGHSSFVNDITFTADGHSVLSAS---SDGTVKMWNLKTTECT--STFKSLGASDIAVNSIHLLPKNTEH  295 (482)
Q Consensus       228 -------~~~~~~~~~~i~~l~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~  295 (482)
                             ............-+. +.++.+++...   .++.|...++......  ..+-  ..+...+..-.+...+ .+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi--~~~~~~~~~~~~~~~~-~~  348 (430)
T d1qfma1         273 ITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PEHEKDVLEWVACVRS-NF  348 (430)
T ss_dssp             SCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEE--CCCSSCEEEEEEEETT-TE
T ss_pred             cccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEe--cccCcceeeeEEEEEC-CE
Confidence                   111222222222222 22233333332   2466777777654321  1221  1233334333333333 34


Q ss_pred             EE-EEeCCC--eEEEEEcCCcEEEEecCCcccCcCEEEEEEcCCCCEEE
Q psy8448         296 FV-VCNKTN--TVVIMNMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIY  341 (482)
Q Consensus       296 l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~  341 (482)
                      ++ ....++  .|++++..++....+....  .+.+..+...++...+.
T Consensus       349 lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~--~~sv~~~~~~~~~~~~~  395 (430)
T d1qfma1         349 LVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIF  395 (430)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEE
T ss_pred             EEEEEEcCCEeEEEEEECCCCcEEEecCCC--CceEeeccCCCCCCEEE
Confidence            44 444554  5788888654444443221  34455454445554443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.28  E-value=0.021  Score=53.05  Aligned_cols=178  Identities=11%  Similarity=0.087  Sum_probs=104.6

Q ss_pred             CeEEEEecCCCceeeccccccccccc-cccccEEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCeEeEEeecccCCC--
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFM-LMEEAVMSLAYSRDS---EMLASGSQSGKVKIWKIATGQCLRKLEKAHSLG--  195 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~-~h~~~i~~l~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--  195 (482)
                      ..|.-.|+++++..-.++........ .......-+....++   ..++.++.+|.+.++|..+++.+..........  
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            35777788888876544433221110 001112222222233   356678899999999999998876542211100  


Q ss_pred             ---------------------------------eEEEEEccCCCEEEEEEC-----------------------------
Q psy8448         196 ---------------------------------VTCIQFSRDNSQILTASF-----------------------------  213 (482)
Q Consensus       196 ---------------------------------v~~i~~~~~~~~l~~~~~-----------------------------  213 (482)
                                                       -...+++|+...+++...                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                             013456676666554332                             


Q ss_pred             -------CCeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEE
Q psy8448         214 -------DTYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSI  286 (482)
Q Consensus       214 -------dg~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  286 (482)
                             .|.|.-+|+.+++.+..... ..+..+-.+.-.+.+++.|+.||.++.+|.++|+.+-.+.........  -+
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~--P~  506 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAA--PM  506 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC--CE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCcccc--CE
Confidence                   25688899999988877652 222222122234677888999999999999999999888754332222  24


Q ss_pred             EEcCCCCCEEEEEeCC
Q psy8448         287 HLLPKNTEHFVVCNKT  302 (482)
Q Consensus       287 ~~~~~~~~~l~~~~~d  302 (482)
                      .+..+|..++++.+..
T Consensus       507 ty~~dGkqyv~v~aG~  522 (560)
T d1kv9a2         507 TFELAGRQYVAIMAGW  522 (560)
T ss_dssp             EEEETTEEEEEEEECC
T ss_pred             EEEECCEEEEEEEeCC
Confidence            4556775666655443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.22  E-value=0.066  Score=49.88  Aligned_cols=161  Identities=14%  Similarity=0.114  Sum_probs=89.7

Q ss_pred             CCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEE-------eCCCcEEEEEcCCCeE
Q psy8448         112 GQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASG-------SQSGKVKIWKIATGQC  184 (482)
Q Consensus       112 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~-------~~dg~i~iwd~~~~~~  184 (482)
                      +..++.++.|+.+.-.|..+|+.+-.....................--..+..++..       +..+.|.-+|.++++.
T Consensus       117 ~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~  196 (582)
T d1flga_         117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcE
Confidence            346777888999999999999876443322111000001111111111123333333       2346788899999988


Q ss_pred             eEEeecccC---------------------------------------CCe-EEEEEccCCCEEEEEEC-----------
Q psy8448         185 LRKLEKAHS---------------------------------------LGV-TCIQFSRDNSQILTASF-----------  213 (482)
Q Consensus       185 ~~~~~~~~~---------------------------------------~~v-~~i~~~~~~~~l~~~~~-----------  213 (482)
                      +.++.....                                       ..+ ..+++.+...+++.+..           
T Consensus       197 ~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~  276 (582)
T d1flga_         197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EEEEeccCCccccccccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccc
Confidence            776632110                                       111 23567776666666541           


Q ss_pred             -------------CCeEEEEeCCCCceEEEeecccccee---------EEEEc-CCCC---EEEEEeCCCcEEEEECCCC
Q psy8448         214 -------------DTYVRIHGLKSGKMLKEFRGHSSFVN---------DITFT-ADGH---SVLSASSDGTVKMWNLKTT  267 (482)
Q Consensus       214 -------------dg~i~i~d~~~~~~~~~~~~~~~~i~---------~l~~~-~~~~---~l~~~~~dg~i~i~d~~~~  267 (482)
                                   ...|.-.|+++++....++.....+.         -+.+. .++.   .++..+.++.+.+.|.+++
T Consensus       277 ~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG  356 (582)
T d1flga_         277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCCcCcccccccceeEEecccchhhhhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCC
Confidence                         23578889999998877653222111         11221 1232   4566778899999999998


Q ss_pred             ceeee
Q psy8448         268 ECTST  272 (482)
Q Consensus       268 ~~~~~  272 (482)
                      +.+..
T Consensus       357 ~~i~~  361 (582)
T d1flga_         357 KLQNA  361 (582)
T ss_dssp             CEEEE
T ss_pred             ccccc
Confidence            86543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.10  E-value=0.044  Score=51.02  Aligned_cols=155  Identities=12%  Similarity=0.092  Sum_probs=89.7

Q ss_pred             EEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcC--CCCEEEEEe------CCCcEEEEEcCCCeEe
Q psy8448         114 YLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSR--DSEMLASGS------QSGKVKIWKIATGQCL  185 (482)
Q Consensus       114 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~  185 (482)
                      .++.++.|+.+.-.|..+|+.+-.........     ..+ .+.-.|  -+..+++++      ..|.|..+|.++|+.+
T Consensus       130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~-----~~~-~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~  203 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQK-----GSL-TITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK  203 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCC-----SSC-BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             cEEEEecccceeeeccccccceecccCccCCc-----ceE-EeecceEEEeccEEEeeccccccccceEEEEecCCccce
Confidence            56667788999989999998765433221100     000 000011  133455543      2468999999999998


Q ss_pred             EEeecccC------------------------------CCe-EEEEEccCCCEEEEEEC-------------------CC
Q psy8448         186 RKLEKAHS------------------------------LGV-TCIQFSRDNSQILTASF-------------------DT  215 (482)
Q Consensus       186 ~~~~~~~~------------------------------~~v-~~i~~~~~~~~l~~~~~-------------------dg  215 (482)
                      .++.....                              ..+ ...++.++...++.+..                   ..
T Consensus       204 W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~  283 (573)
T d1kb0a2         204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA  283 (573)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             eeeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccc
Confidence            87632110                              011 13456666555554331                   13


Q ss_pred             eEEEEeCCCCceEEEeeccccce---------eEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeeeee
Q psy8448         216 YVRIHGLKSGKMLKEFRGHSSFV---------NDITFTADG---HSVLSASSDGTVKMWNLKTTECTSTFK  274 (482)
Q Consensus       216 ~i~i~d~~~~~~~~~~~~~~~~i---------~~l~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  274 (482)
                      .|.-.|+++++....++.....+         .......++   ..++.++.+|.+.++|..+++.+....
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~  354 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccc
Confidence            57778899998877665322221         122222233   356778889999999999998775543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.07  E-value=0.047  Score=50.83  Aligned_cols=84  Identities=15%  Similarity=0.020  Sum_probs=54.1

Q ss_pred             CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCC
Q psy8448         215 TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTE  294 (482)
Q Consensus       215 g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  294 (482)
                      |.|.-||+.+++.+...+... +...=...-.+.++++|+.||.++.+|.++|+.+-.+....+.....  +.|..+|..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEE
Confidence            357778888888877665322 21111122357788889999999999999999998887533222221  445557755


Q ss_pred             EEEEEeC
Q psy8448         295 HFVVCNK  301 (482)
Q Consensus       295 ~l~~~~~  301 (482)
                      ++++.+.
T Consensus       534 Yv~v~~G  540 (573)
T d1kb0a2         534 YVSVAVG  540 (573)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            6555443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.00  E-value=0.067  Score=43.94  Aligned_cols=210  Identities=10%  Similarity=0.120  Sum_probs=132.5

Q ss_pred             CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEE
Q psy8448         121 DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQ  200 (482)
Q Consensus       121 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~  200 (482)
                      ...|.|-|+.+.....+-+..           .-+.-.+|..+.||.-+ ..++.++|+++.+.+..+.  ...+|.--.
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~-----------AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~--~~e~VvfWk  109 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWK  109 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC-----------CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEE
T ss_pred             CceEEEEECCCCCcceecccc-----------hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEE
Confidence            357889998876543222222           22445678888887766 4589999999999988874  455777777


Q ss_pred             EccCCCEEEEEECCCeEEEEeCCCC-ceEEEeeccc----cceeEEEEcCCCCEEEEEeC-------CCcEEEEECCCCc
Q psy8448         201 FSRDNSQILTASFDTYVRIHGLKSG-KMLKEFRGHS----SFVNDITFTADGHSVLSASS-------DGTVKMWNLKTTE  268 (482)
Q Consensus       201 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~----~~i~~l~~~~~~~~l~~~~~-------dg~i~i~d~~~~~  268 (482)
                      |-.+ +.|+..+ +..|+-|+++.. ++.+.+..|.    ..|..-..+++.++++..+-       .|.+.+|..+.+.
T Consensus       110 Wis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~  187 (327)
T d1utca2         110 WISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV  187 (327)
T ss_dssp             ESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred             ecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc
Confidence            7644 4566665 678999999543 4556665443    46778888999999876431       3678999987643


Q ss_pred             eeeeeeccCCCccceeEEEEcCCC--CCEEEEE---eCCCeEEEEEcC----Cc-----EEEEec-CCcccCcCEEEEEE
Q psy8448         269 CTSTFKSLGASDIAVNSIHLLPKN--TEHFVVC---NKTNTVVIMNMQ----GQ-----IVRSLS-SGKREGGDFLCCTT  333 (482)
Q Consensus       269 ~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~---~~d~~i~i~d~~----~~-----~~~~~~-~~~~~~~~v~~~~~  333 (482)
                       .+.+.   +|......+....+.  ..+++.+   ...+.+++.++.    +.     ....+. .......-..++..
T Consensus       188 -sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv  263 (327)
T d1utca2         188 -SQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  263 (327)
T ss_dssp             -EEEEC---CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE
T ss_pred             -Ccccc---ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEe
Confidence             33443   554444333332111  1233322   233678888872    11     111111 11122344567889


Q ss_pred             cCCCCEEEEEeCCcEEE
Q psy8448         334 SPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       334 ~~~g~~l~~~~~dg~i~  350 (482)
                      ++.-..++..+.-|.++
T Consensus       264 s~kygiiyviTK~G~i~  280 (327)
T d1utca2         264 SEKHDVVFLITKYGYIH  280 (327)
T ss_dssp             ETTTTEEEEEETTSEEE
T ss_pred             eccCCEEEEEecCcEEE
Confidence            99989999999999999

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.65  E-value=0.068  Score=45.79  Aligned_cols=185  Identities=15%  Similarity=0.105  Sum_probs=101.5

Q ss_pred             EEEEEEcCCCCEEEEEeC------------CCcEEEEEcCCCeEeE-Eee--ccc----CCCeEEEEE--ccCCC-EEEE
Q psy8448         153 VMSLAYSRDSEMLASGSQ------------SGKVKIWKIATGQCLR-KLE--KAH----SLGVTCIQF--SRDNS-QILT  210 (482)
Q Consensus       153 i~~l~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~-~~~--~~~----~~~v~~i~~--~~~~~-~l~~  210 (482)
                      ...++..|+|..+++++.            .|.|.++|+.+.+... .+.  ...    .-....+..  .+++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            445777888877766542            4889999987654322 111  010    012234443  34555 3444


Q ss_pred             EE---CCCeEEEEeCCCCce-E---EEee-ccccceeEEEEcCCCCEEEEEeC---------------CCcEEEEECCCC
Q psy8448         211 AS---FDTYVRIHGLKSGKM-L---KEFR-GHSSFVNDITFTADGHSVLSASS---------------DGTVKMWNLKTT  267 (482)
Q Consensus       211 ~~---~dg~i~i~d~~~~~~-~---~~~~-~~~~~i~~l~~~~~~~~l~~~~~---------------dg~i~i~d~~~~  267 (482)
                      ..   ...+|.++++..... +   .++. ......+.+.+..++..+++-..               -+...+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   345788887754332 1   2222 12344788998888887777321               123344444444


Q ss_pred             ceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-EEEEecCCcccCcCEEEEEEcCC-CCEEEE
Q psy8448         268 ECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQGQ-IVRSLSSGKREGGDFLCCTTSPR-GEWIYC  342 (482)
Q Consensus       268 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~-g~~l~~  342 (482)
                      +......    .-...+.|+++|++..++++-+..+.|+.|++.+. .+....... -....-.+.+.++ |.+.++
T Consensus       197 ~~~~~~~----~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         197 DVRVVAE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             CEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEE
T ss_pred             ceEEEcC----CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEE
Confidence            4332222    23456899999999667777778899999999422 222111111 1344567888764 444443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.37  E-value=0.12  Score=48.03  Aligned_cols=83  Identities=18%  Similarity=0.165  Sum_probs=56.2

Q ss_pred             CeEEEEeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCC
Q psy8448         215 TYVRIHGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTE  294 (482)
Q Consensus       215 g~i~i~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  294 (482)
                      |.|.-+|+.+++.+.+...+ .++..-..+-.+.++++|+.||.++.+|.++|+.+-.++........  -+.+..+|.+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~--P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP--PITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC--CEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCcccc--CEEEEECCEE
Confidence            56888899999888777633 22222122345678888999999999999999999888753322222  2556667755


Q ss_pred             EEEEEe
Q psy8448         295 HFVVCN  300 (482)
Q Consensus       295 ~l~~~~  300 (482)
                      ++++..
T Consensus       543 Yv~i~a  548 (582)
T d1flga_         543 YLGVTV  548 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            665543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.11  E-value=0.34  Score=41.27  Aligned_cols=192  Identities=16%  Similarity=0.215  Sum_probs=105.9

Q ss_pred             EEEEEEcCCCCEEEEEeC------------CCeEEEEecCCCceee-ccccccccccccccccEEEEEE--cCCCC-EEE
Q psy8448         103 VECARFSPDGQYLITGSV------------DGFIEVWNFTTGKIRK-DLKYQAQDNFMLMEEAVMSLAY--SRDSE-MLA  166 (482)
Q Consensus       103 v~~~~~s~~~~~l~s~~~------------dg~v~iwd~~~~~~~~-~~~~~~~~~~~~h~~~i~~l~~--~~~~~-~l~  166 (482)
                      --++...|+|..+++++.            .|.|.++|+.+.+... .+...... .....-....+..  .+++. +|+
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~-~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT-LDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSS-SCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCC-CCCcceeccceeEEEcCCCcEEEE
Confidence            346788888877776542            4899999987654322 11111100 0000112234443  34555 455


Q ss_pred             EEe---CCCcEEEEEcCCCe--E--eEEeecccCCCeEEEEEccCCCEEEEEE-----------------CCCeEEEEeC
Q psy8448         167 SGS---QSGKVKIWKIATGQ--C--LRKLEKAHSLGVTCIQFSRDNSQILTAS-----------------FDTYVRIHGL  222 (482)
Q Consensus       167 ~~~---~dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~-----------------~dg~i~i~d~  222 (482)
                      +..   ...+|.+|++....  .  ...+........+.+++..++.+++|-.                 .-+.+..|| 
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~-  194 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-  194 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC-
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc-
Confidence            543   34678888875432  1  2233223345578999988888777731                 113344444 


Q ss_pred             CCCceEEEeeccccceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448         223 KSGKMLKEFRGHSSFVNDITFTADGHSVLSAS-SDGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       223 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                       .++. ......-...+.|+++|++++|+++. ..+.|+.|++............ .-....-.+.+.+.++.+.+++
T Consensus       195 -~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         195 -PNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             -SSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             -CCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEEEEEE
Confidence             3333 22222345678999999998776654 5778999998754433222211 2234456777776543555544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.70  E-value=0.54  Score=40.37  Aligned_cols=181  Identities=8%  Similarity=0.068  Sum_probs=103.4

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEecCCC-------ceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCCc
Q psy8448         101 SHVECARFSPDGQYLITGSVDGFIEVWNFTTG-------KIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGK  173 (482)
Q Consensus       101 ~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~  173 (482)
                      ...+-++.++...++++|+.++ ++|-.+..-       .....+....      .-..|..++|+.+  .|+.. .++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~------~ip~v~~vafs~d--~l~v~-~~~~  106 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK------EIPDVIFVCFHGD--QVLVS-TRNA  106 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE------ECTTEEEEEEETT--EEEEE-ESSE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc------CCCCeEEEEeeCC--EEEEE-eCCC
Confidence            3466788999888888888775 667664311       1001111110      1135888999744  45554 4456


Q ss_pred             EEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEEee-----ccccceeEEEEcCCCC
Q psy8448         174 VKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKEFR-----GHSSFVNDITFTADGH  248 (482)
Q Consensus       174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~l~~~~~~~  248 (482)
                      +..++...-...... .....++..+.++|.  .++....++.+.++++..++......     .-.+.+.+++|++.|.
T Consensus       107 l~~~~~~~l~~~~~~-~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk  183 (381)
T d1xipa_         107 LYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF  183 (381)
T ss_dssp             EEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE
T ss_pred             EEEEEeecccccccc-ccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE
Confidence            888887654433333 234566888888764  57777789999999998886433221     1234567777877777


Q ss_pred             EEEEEeCCCcEEEE-ECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEE
Q psy8448         249 SVLSASSDGTVKMW-NLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVC  299 (482)
Q Consensus       249 ~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~  299 (482)
                      .++++..++ ..+- ++...   ..+.........+.+|.|..+. .++++-
T Consensus       184 q~v~~~g~~-~q~k~~i~~~---~~~~~p~~~~~~v~sI~WL~~~-~F~vvy  230 (381)
T d1xipa_         184 QSFAWRNGE-MEKQFEFSLP---SELEELPVEEYSPLSVTILSPQ-DFLAVF  230 (381)
T ss_dssp             EEEEEETTE-EEEEEEECCC---HHHHTSCTTTSEEEEEEESSSS-EEEEEE
T ss_pred             EEEEeCCCc-eeeccCCCCc---cccCCCcCCCcceeEEEEecCc-eEEEEE
Confidence            777664322 1111 11111   1111111234578899998765 344433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.11  E-value=0.81  Score=38.77  Aligned_cols=185  Identities=10%  Similarity=0.188  Sum_probs=105.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEEcc----C--CCEEEEEEC-C---CeEEEEeCCC-CceEE
Q psy8448         161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQFSR----D--NSQILTASF-D---TYVRIHGLKS-GKMLK  229 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~----~--~~~l~~~~~-d---g~i~i~d~~~-~~~~~  229 (482)
                      +..+++....++-|.+||+. |+.+..+.   .+.+..+..-.    +  ..-+++++. +   ..|.+|.+.. ...+.
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            45667777777779999985 77777663   34555554331    2  223455542 2   3677887752 23333


Q ss_pred             Eeecc-------ccceeEEEE--cCC-CC-EEEEEeCCCcEEEEECC---CCc----eeeeeeccCCCccceeEEEEcCC
Q psy8448         230 EFRGH-------SSFVNDITF--TAD-GH-SVLSASSDGTVKMWNLK---TTE----CTSTFKSLGASDIAVNSIHLLPK  291 (482)
Q Consensus       230 ~~~~~-------~~~i~~l~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~~----~~~~~~~~~~~~~~v~~i~~~~~  291 (482)
                      .+...       ...+..+|+  ++. +. ++++...+|.+..|.+.   .+.    .++.+    .....+..+.+.+.
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f----~~~~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF----KMNSQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE----ECSSCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc----CCCCccceEEEeCC
Confidence            33221       123666776  664 44 45667778998888763   232    33344    23456788888888


Q ss_pred             CCCEEEEEeCCCeEEEEEcC------CcEEEEecCCcccCcCEEEEEEcC--CCC-EEEE-EeCCcEEEEEeeh
Q psy8448         292 NTEHFVVCNKTNTVVIMNMQ------GQIVRSLSSGKREGGDFLCCTTSP--RGE-WIYC-VGEDMVLVVRLIQ  355 (482)
Q Consensus       292 ~~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~~~~~~~v~~~~~~~--~g~-~l~~-~~~dg~i~iw~~~  355 (482)
                      . ..|+.+-.+..|..++.+      +..+..... ..-...+-.+++-.  ++. +|++ .-.++...+|+..
T Consensus       191 ~-~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g-~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~  262 (353)
T d1h6la_         191 Y-GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ  262 (353)
T ss_dssp             T-TEEEEEETTTEEEEEESSTTSCSCCEEEEECSS-SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             C-CcEEEecCccceEEEEeccCCCccceeeecccC-ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence            7 788888888777666652      122222222 11245677776542  333 5544 4457788877654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.95  E-value=0.9  Score=38.48  Aligned_cols=197  Identities=12%  Similarity=0.171  Sum_probs=111.0

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEc------CCCCEEEEEe-C-C--CcEEEEEcC
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYS------RDSEMLASGS-Q-S--GKVKIWKIA  180 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~------~~~~~l~~~~-~-d--g~i~iwd~~  180 (482)
                      +..+++.....+-|++||++ |+.+..+..          +.++.+..-      ....-+++++ . +  .+|.+|.+.
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~----------Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id  107 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT----------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCS----------SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEeccc----------CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEec
Confidence            45566666666669999985 776665542          234444433      2223355555 2 2  257778764


Q ss_pred             C-CeEeEEeecc------cCCCeEEEEE--ccC-CC-EEEEEECCCeEEEEeCC---CC----ceEEEeeccccceeEEE
Q psy8448         181 T-GQCLRKLEKA------HSLGVTCIQF--SRD-NS-QILTASFDTYVRIHGLK---SG----KMLKEFRGHSSFVNDIT  242 (482)
Q Consensus       181 ~-~~~~~~~~~~------~~~~v~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~l~  242 (482)
                      . ...+..+...      ....+..+++  ++. +. ++++...+|.+..|.+.   .+    +.++.+. ....+..+.
T Consensus       108 ~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCV  186 (353)
T d1h6la_         108 GKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMA  186 (353)
T ss_dssp             TTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEE
T ss_pred             CcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEE
Confidence            2 2233333111      1123555555  654 44 46677778988888763   23    2344444 355788999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCC--Cceeeeeecc--CCCccceeEEEEcC--CCCCEEEE-EeCCCeEEEEEcC--Cc
Q psy8448         243 FTADGHSVLSASSDGTVKMWNLKT--TECTSTFKSL--GASDIAVNSIHLLP--KNTEHFVV-CNKTNTVVIMNMQ--GQ  313 (482)
Q Consensus       243 ~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~--~~~~~~v~~i~~~~--~~~~~l~~-~~~d~~i~i~d~~--~~  313 (482)
                      +++....|+.+-.+.-|..++...  ......+...  ......+..++.-.  ++..++++ .-.+++..+||..  .+
T Consensus       187 vDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~  266 (353)
T d1h6la_         187 ADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNK  266 (353)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             EeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence            999999999998887676666542  1111111111  12245667776543  33334444 4467889999984  34


Q ss_pred             EEEEec
Q psy8448         314 IVRSLS  319 (482)
Q Consensus       314 ~~~~~~  319 (482)
                      .+..+.
T Consensus       267 ~~g~F~  272 (353)
T d1h6la_         267 YVADFQ  272 (353)
T ss_dssp             EEEEEE
T ss_pred             ccceEE
Confidence            554443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.59  Score=38.30  Aligned_cols=210  Identities=10%  Similarity=-0.003  Sum_probs=93.2

Q ss_pred             CeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCeEeEEeeccc
Q psy8448         122 GFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQ---------SGKVKIWKIATGQCLRKLEKAH  192 (482)
Q Consensus       122 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~  192 (482)
                      ..+.+||+.+++-...-..+.  ...+|    ..+..  +++.++.|+.         -..+.+||..+.+....-....
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~--~R~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~   90 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQV--PRSGL----AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV   90 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSS--CCBSC----EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS
T ss_pred             ceEEEEECCCCeEEECCCCCC--cccee----EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccc
Confidence            368899999876544322211  11112    22222  4566666552         1367788887665432211111


Q ss_pred             -CCCeEEEEEccCCCEEEEEECCC-----eEEEEeCCCCceEEEeeccc-cceeEEEEcCCCCEEEEEeCC-----CcEE
Q psy8448         193 -SLGVTCIQFSRDNSQILTASFDT-----YVRIHGLKSGKMLKEFRGHS-SFVNDITFTADGHSVLSASSD-----GTVK  260 (482)
Q Consensus       193 -~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~d-----g~i~  260 (482)
                       ...-.++.+  +++.++.++.++     ....+|..+........... ..-.++... ++..++.|+.+     ..+.
T Consensus        91 ~r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~  167 (288)
T d1zgka1          91 PRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAE  167 (288)
T ss_dssp             CCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEE
T ss_pred             eecceecccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEE
Confidence             111222222  555555554333     34456665554322111100 011122222 34445555442     4578


Q ss_pred             EEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCcEEEEecCCcccCcCEEEEEEcC
Q psy8448         261 MWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKT-----NTVVIMNMQGQIVRSLSSGKREGGDFLCCTTSP  335 (482)
Q Consensus       261 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  335 (482)
                      .||..+.+....-..  .......+..... + .+++.++.+     .....+|........+............+.+  
T Consensus       168 ~~d~~~~~~~~~~~~--~~~~~~~~~~~~~-~-~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--  241 (288)
T d1zgka1         168 CYYPERNEWRMITAM--NTIRSGAGVCVLH-N-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--  241 (288)
T ss_dssp             EEETTTTEEEECCCC--SSCCBSCEEEEET-T-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred             Eeecccccccccccc--cccccccccccee-e-eEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE--
Confidence            888876543322111  1111112233322 2 556665443     3567777755555555432221222222222  


Q ss_pred             CCCEEEEEeCCcE
Q psy8448         336 RGEWIYCVGEDMV  348 (482)
Q Consensus       336 ~g~~l~~~~~dg~  348 (482)
                      +++.++.|+.++.
T Consensus       242 ~~~l~v~GG~~~~  254 (288)
T d1zgka1         242 QGRIYVLGGYDGH  254 (288)
T ss_dssp             TTEEEEECCBCSS
T ss_pred             CCEEEEEecCCCC
Confidence            5777777776543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.82  E-value=0.6  Score=35.82  Aligned_cols=215  Identities=12%  Similarity=0.149  Sum_probs=110.5

Q ss_pred             CCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEE-cCCCCEEEEEe------CCCcEEEEEcCCCe
Q psy8448         111 DGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAY-SRDSEMLASGS------QSGKVKIWKIATGQ  183 (482)
Q Consensus       111 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~-~~~~~~l~~~~------~dg~i~iwd~~~~~  183 (482)
                      +.++|+++...|.+.++-+..++.....+           ++|..... .+.-.++..+-      .-..|.+-++....
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk-----------ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~G   93 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR-----------EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPG   93 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS-----------SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec-----------ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCC
Confidence            34577888788999999988877654332           22322111 11111222210      11234455554222


Q ss_pred             EeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCceEEE--eec-------cccceeEEEEc-CCCCEEEEE
Q psy8448         184 CLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKMLKE--FRG-------HSSFVNDITFT-ADGHSVLSA  253 (482)
Q Consensus       184 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~-------~~~~i~~l~~~-~~~~~l~~~  253 (482)
                      .-..+.....-.|.++++. +....++|+......+|-++.|+...-  +.+       ....|..+.+- +..+-++++
T Consensus        94 EE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~a  172 (313)
T d2hu7a1          94 EEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTS  172 (313)
T ss_dssp             CEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             eeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEE
Confidence            2233322223456666664 345677888888888888888765332  221       11223333322 222224444


Q ss_pred             eC-CCcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeC---CCeEEEEEcCCcEEEEecCCcc-----c
Q psy8448         254 SS-DGTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNK---TNTVVIMNMQGQIVRSLSSGKR-----E  324 (482)
Q Consensus       254 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~-----~  324 (482)
                      .- .|.+++++..              ++.++.....+.. +. ++.-.   +....-+|++.+....+.-...     .
T Consensus       173 dl~SG~lri~tpk--------------eGS~~~ay~~~gn-KV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~  236 (313)
T d2hu7a1         173 NLSSGGLRVFDSG--------------EGSFSSASISPGM-KV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYR  236 (313)
T ss_dssp             ETTTEEEEEECCS--------------SEEEEEEEECTTS-CE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHC
T ss_pred             ecccCCEEEecCC--------------CCcccceeEccCc-ee-eeccCCCCceEEEEEecccCceeeeecCcccceeec
Confidence            43 5555555544              3444555555543 22 33221   1122244665555554443211     1


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCcEEEEEe
Q psy8448         325 GGDFLCCTTSPRGEWIYCVGEDMVLVVRL  353 (482)
Q Consensus       325 ~~~v~~~~~~~~g~~l~~~~~dg~i~iw~  353 (482)
                      ...|.-+-+.|++++++.+-.||.-.++.
T Consensus       237 p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         237 PTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             CSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             ceEEEeeeeCCCCcEEEEEecCCchheee
Confidence            34566677999999999999999998654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.77  E-value=1.3  Score=39.26  Aligned_cols=62  Identities=18%  Similarity=0.207  Sum_probs=42.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeccccccccccccccccEEEEEEcCC
Q psy8448         100 KSHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRD  161 (482)
Q Consensus       100 ~~~v~~~~~s~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~  161 (482)
                      -...++|+|.|||++|++--..|.|++++..+++...............-+.....++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34678999999999888775579999999887765433322211111122467889999994

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.04  E-value=2.6  Score=36.83  Aligned_cols=100  Identities=19%  Similarity=0.314  Sum_probs=66.2

Q ss_pred             cEEEEEEcCCCCEEEEEe-CC----CcEEEEEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC------------
Q psy8448         152 AVMSLAYSRDSEMLASGS-QS----GKVKIWKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD------------  214 (482)
Q Consensus       152 ~i~~l~~~~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------------  214 (482)
                      .+..++++|++++++.+- .+    ..++++|+.+++.+.....  ......++|.++++.|+....+            
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            355678899999888653 22    3799999999987653321  2223568899999988765433            


Q ss_pred             ----CeEEEEeCCCCce--EEEeecc--ccceeEEEEcCCCCEEEEE
Q psy8448         215 ----TYVRIHGLKSGKM--LKEFRGH--SSFVNDITFTADGHSVLSA  253 (482)
Q Consensus       215 ----g~i~i~d~~~~~~--~~~~~~~--~~~i~~l~~~~~~~~l~~~  253 (482)
                          ..|..+.+.+...  ...+...  ...+..+..++++++++..
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence                2578888776543  2233322  2346677788999988754

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.92  E-value=3.7  Score=34.11  Aligned_cols=105  Identities=13%  Similarity=0.167  Sum_probs=69.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC------eEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEEEeCCCCce-------
Q psy8448         161 DSEMLASGSQSGKVKIWKIATG------QCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRIHGLKSGKM-------  227 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------  227 (482)
                      ...+|+..+..|.++...+..-      +....+.......+..+....+...++.++..|.+..++...-..       
T Consensus       105 ~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~G  184 (323)
T d1wp5a_         105 LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG  184 (323)
T ss_dssp             SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC
T ss_pred             cceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEEEecceeeEeecccccccCccccc
Confidence            3568999999999999987432      122223234556677777777778899999999999998754322       


Q ss_pred             EEEeec-cccceeE-EEEcCCCCEEEEEeCCCcEEEEECC
Q psy8448         228 LKEFRG-HSSFVND-ITFTADGHSVLSASSDGTVKMWNLK  265 (482)
Q Consensus       228 ~~~~~~-~~~~i~~-l~~~~~~~~l~~~~~dg~i~i~d~~  265 (482)
                      +.-++- ....+.+ ....+++..|+..+..|..+.-.+.
T Consensus       185 V~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~  224 (323)
T d1wp5a_         185 VKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT  224 (323)
T ss_dssp             EECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred             ccccccccccccchhhhccccccceeeeeeeheeecccch
Confidence            111111 2334444 3455667788899999988876654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=4.1  Score=32.81  Aligned_cols=194  Identities=10%  Similarity=0.033  Sum_probs=86.5

Q ss_pred             CCCEEEEEeC---------CCeEEEEecCCCceeeccccccccccccccccEEEEEEcCCCCEEEEEeCCC-----cEEE
Q psy8448         111 DGQYLITGSV---------DGFIEVWNFTTGKIRKDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSG-----KVKI  176 (482)
Q Consensus       111 ~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg-----~i~i  176 (482)
                      ++++++.|+.         -..+.+||..+.+....-.....      ...-.+..+  +++.++.++.++     ....
T Consensus        50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~------r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~  121 (288)
T d1zgka1          50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP------RNRIGVGVI--DGHIYAVGGSHGCIHHNSVER  121 (288)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC------CBTCEEEEE--TTEEEEECCEETTEECCCEEE
T ss_pred             CCEEEEEeCcccCCCCccccchhhhcccccccccccccccce------ecceecccc--ceeeEEecceecccccceeee
Confidence            4566666652         13677888877665432221111      111122222  556566555433     3455


Q ss_pred             EEcCCCeEeEEeecccCCCeEEEEEccCCCEEEEEECC-----CeEEEEeCCCCceEEEeec-cccceeEEEEcCCCCEE
Q psy8448         177 WKIATGQCLRKLEKAHSLGVTCIQFSRDNSQILTASFD-----TYVRIHGLKSGKMLKEFRG-HSSFVNDITFTADGHSV  250 (482)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l  250 (482)
                      +|..+......-.......-.++... ++..++.|+.+     ..+..||..+.+....-.. ....-.+.... .+..+
T Consensus       122 ~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~  199 (288)
T d1zgka1         122 YEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIY  199 (288)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEE
T ss_pred             eccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEE
Confidence            67666543322111111111112222 34455555443     3578888876543321111 11111222322 34555


Q ss_pred             EEEeCC-----CcEEEEECCCCceeeeeeccCCCccceeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcEEEEe
Q psy8448         251 LSASSD-----GTVKMWNLKTTECTSTFKSLGASDIAVNSIHLLPKNTEHFVVCNKTN-----TVVIMNMQGQIVRSL  318 (482)
Q Consensus       251 ~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~  318 (482)
                      +.++.+     .....+|..+.+....-. ....... .+++.. ++ ++++.|+.++     .+.+||+.......+
T Consensus       200 i~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~~-~~~~~~-~~-~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~  273 (288)
T d1zgka1         200 AAGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSA-LGITVH-QG-RIYVLGGYDGHTFLDSVECYDPDTDTWSEV  273 (288)
T ss_dssp             EECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBS-CEEEEE-TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             EecCccccccccceeeeeecceeeecccC-ccCcccc-eEEEEE-CC-EEEEEecCCCCeecceEEEEECCCCEEEEC
Confidence            555433     346788877765433211 1111111 122222 34 6777776543     477888854443333

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.55  E-value=2.4  Score=37.38  Aligned_cols=109  Identities=13%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeecc-----CCCccceeEEEEcCC---CCCEEEEEeC-----
Q psy8448         235 SSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSL-----GASDIAVNSIHLLPK---NTEHFVVCNK-----  301 (482)
Q Consensus       235 ~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~---~~~~l~~~~~-----  301 (482)
                      -...++|+|.|++++|++--..|.|++++..+++........     ...+.....|+++|+   ...++++.+.     
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            345789999999997776545799999998877643322211     122456789999985   2133333220     


Q ss_pred             -C----Ce--EEEEEcC--Cc-------EEEEecCCcccCcCEEEEEEcCCCCEEEEEeC
Q psy8448         302 -T----NT--VVIMNMQ--GQ-------IVRSLSSGKREGGDFLCCTTSPRGEWIYCVGE  345 (482)
Q Consensus       302 -d----~~--i~i~d~~--~~-------~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~  345 (482)
                       +    +.  +..+...  ..       .+.......  ...-..++|.|||.+.++.++
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~--~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK--DHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS--SCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccc--cccccceeEcCCCCEEEEecC
Confidence             0    11  3333331  11       111122221  234578999999987776664

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.89  E-value=6.1  Score=33.56  Aligned_cols=180  Identities=11%  Similarity=0.061  Sum_probs=100.8

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----------CeEeEEeecccCCCeEEEEEccCCCEEEEEECCCeEEE
Q psy8448         151 EAVMSLAYSRDSEMLASGSQSGKVKIWKIAT-----------GQCLRKLEKAHSLGVTCIQFSRDNSQILTASFDTYVRI  219 (482)
Q Consensus       151 ~~i~~l~~~~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i  219 (482)
                      ....-++.++...++++|+.++ +.|..+..           .......   .-..|..++|+.+  .+++.. ++.+..
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~---~ip~v~~vafs~d--~l~v~~-~~~l~~  109 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK---EIPDVIFVCFHGD--QVLVST-RNALYS  109 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE---ECTTEEEEEEETT--EEEEEE-SSEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc---CCCCeEEEEeeCC--EEEEEe-CCCEEE
Confidence            3566788888777888888774 66766321           1111111   1235888999744  455554 667888


Q ss_pred             EeCCCCceEEEeeccccceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeccC--CCccceeEEEEcCCCCCEEE
Q psy8448         220 HGLKSGKMLKEFRGHSSFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTSTFKSLG--ASDIAVNSIHLLPKNTEHFV  297 (482)
Q Consensus       220 ~d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~  297 (482)
                      ++..+-...........++..+.++|.  .++....++.+.++++..++.........  .-...+.+++|++.+ ..++
T Consensus       110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kg-kq~v  186 (381)
T d1xipa_         110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRS-FQSF  186 (381)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSC-EEEE
T ss_pred             EEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCc-EEEE
Confidence            888776555555545667888888774  56777788999999999886433221000  112334555555554 3444


Q ss_pred             EEeCCCeEEEE-EcCCcEEEEecCCcccCcCEEEEEEcCCCCEEEEE
Q psy8448         298 VCNKTNTVVIM-NMQGQIVRSLSSGKREGGDFLCCTTSPRGEWIYCV  343 (482)
Q Consensus       298 ~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~  343 (482)
                      ++..++ ..+- ++..  ...+.........+.++.|-.+..++++-
T Consensus       187 ~~~g~~-~q~k~~i~~--~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         187 AWRNGE-MEKQFEFSL--PSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEETTE-EEEEEEECC--CHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EeCCCc-eeeccCCCC--ccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            432221 1110 1100  00011111124467889998777666643

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=87.33  E-value=4.9  Score=30.69  Aligned_cols=106  Identities=8%  Similarity=0.070  Sum_probs=59.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEeEEeecccCCCeEEEEE-ccCCCEEEEE------ECCCeEEEEeCCCCceEEEeec
Q psy8448         161 DSEMLASGSQSGKVKIWKIATGQCLRKLEKAHSLGVTCIQF-SRDNSQILTA------SFDTYVRIHGLKSGKMLKEFRG  233 (482)
Q Consensus       161 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~------~~dg~i~i~d~~~~~~~~~~~~  233 (482)
                      +.+.++++...|.+.++-+..++.....    ..+|....- .+.-.++..+      -.-..|.+-++...-....+..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt----kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN----REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC----SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe----cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            4457888888999999988777655432    233322211 1111222221      1122344555442222233332


Q ss_pred             cc-cceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q psy8448         234 HS-SFVNDITFTADGHSVLSASSDGTVKMWNLKTTECTS  271 (482)
Q Consensus       234 ~~-~~i~~l~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  271 (482)
                      .. -.|.+++.. +.+..++|+......+|-++.|+...
T Consensus       101 pk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrk  138 (313)
T d2hu7a1         101 VKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRE  138 (313)
T ss_dssp             SCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEE
T ss_pred             CceEEEEEeeec-CceEEEecccCCceEEEEEeCCceee
Confidence            23 456677765 45677788888889999998887543

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.91  E-value=9.2  Score=31.57  Aligned_cols=231  Identities=14%  Similarity=0.149  Sum_probs=129.0

Q ss_pred             CCCCEEEEEeCCCeEEEEecCCCcee--eccccccccccccccccEEEEEEcCCCCEEEEEeCCCcEEEEEc---CC---
Q psy8448         110 PDGQYLITGSVDGFIEVWNFTTGKIR--KDLKYQAQDNFMLMEEAVMSLAYSRDSEMLASGSQSGKVKIWKI---AT---  181 (482)
Q Consensus       110 ~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~~~~~dg~i~iwd~---~~---  181 (482)
                      |+.+.+++-+.+|.|+--++.+-+..  ......      . .+.+..+........|+.-+..|.++....   ..   
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k------~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~   75 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK------D-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW   75 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC------T-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc------C-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccc
Confidence            56678888899999986554321100  001111      1 245555555555556666677887766553   22   


Q ss_pred             ---CeEeEEee-cccCCCeEEEE-Ecc--CCCEEEEEECCCeEEEEeCCCCc------eE--EEeeccccceeEEEEcCC
Q psy8448         182 ---GQCLRKLE-KAHSLGVTCIQ-FSR--DNSQILTASFDTYVRIHGLKSGK------ML--KEFRGHSSFVNDITFTAD  246 (482)
Q Consensus       182 ---~~~~~~~~-~~~~~~v~~i~-~~~--~~~~l~~~~~dg~i~i~d~~~~~------~~--~~~~~~~~~i~~l~~~~~  246 (482)
                         |..+..+. ......+..+. ..+  ...+|+..+..|.++..++....      ..  ..+. ....+..+....+
T Consensus        76 ~s~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~-~~D~l~~v~~~~~  154 (323)
T d1wp5a_          76 KDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLTDG  154 (323)
T ss_dssp             TSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEECS
T ss_pred             ccccccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc-ccccccceeccCC
Confidence               33332221 12233444433 332  35789999999999998874321      11  1222 3455666777667


Q ss_pred             CCEEEEEeCCCcEEEEECCCCcee-------eeeeccCCCccceeEEEEcCCCCCEEEEEeCCCeEEEEEcC--------
Q psy8448         247 GHSVLSASSDGTVKMWNLKTTECT-------STFKSLGASDIAVNSIHLLPKNTEHFVVCNKTNTVVIMNMQ--------  311 (482)
Q Consensus       247 ~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d~~i~i~d~~--------  311 (482)
                      ...++.++..|.+..++...-...       .-++.  .....+.+....++....+++.+..|..+...+.        
T Consensus       155 ~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL--~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~Rg  232 (323)
T d1wp5a_         155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL--KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRA  232 (323)
T ss_dssp             CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC--CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTT
T ss_pred             CeEEEEEEecceeeEeecccccccCccccccccccc--ccccccchhhhccccccceeeeeeeheeecccchhhcccccc
Confidence            778999999999999987542211       11111  1233444444333333678888888888776552        


Q ss_pred             CcEEEEecCCcccCcCEEEEEEcCCCCEEEEEeCCcEEE
Q psy8448         312 GQIVRSLSSGKREGGDFLCCTTSPRGEWIYCVGEDMVLV  350 (482)
Q Consensus       312 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l~~~~~dg~i~  350 (482)
                      ++-+..+.........+..+....+...|+..+..|.+.
T Consensus       233 gkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~  271 (323)
T d1wp5a_         233 KRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIE  271 (323)
T ss_dssp             SCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred             ccccccccccccccceeeeeEecCCCCEEEEEeCCCEEE
Confidence            122333322222234465666666667777788888776