Psyllid ID: psy846

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MFNLFQNITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEcccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccHHHHHccHcHcHccc
Coil and Loop (DISEMBL)
MFNLFQNITEVQGNETVTyysdhinanpdfyMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMlysplsffeetpsgriqnyfTKDMFEVYR
Flexible Loop (DISEMBL)
MFNLFQNITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSffeetpsgriqnyftkdmfevyr
Low Complexity Region (SEG)
MFNLFQNITEVQGNETVTYYSDHINANPDFYMYQTVYAstigiiiltsllRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR
Disordered region (IsUnstruct)
***LFQNITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMF****
Disordered Region (DISOPRED)
MFNLFQNITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR
Disordered Region (DISEMBL)
MFNLFQNITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR
Disordered Region (DISPRO)
MFNLFQNITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFNLFQNITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
O15440	1437	Multidrug resistance-asso	yes	N/A	0.902	0.064	0.421	2e-16
Q9R1X5	1436	Multidrug resistance-asso	yes	N/A	0.902	0.064	0.410	1e-15
Q9QYM0	1436	Multidrug resistance-asso	yes	N/A	0.902	0.064	0.4	6e-15
Q96J65	1359	Multidrug resistance-asso	no	N/A	0.864	0.065	0.4	3e-13
Q6Y306	1366	Multidrug resistance-asso	no	N/A	0.922	0.069	0.375	2e-12
Q80WJ6	1366	Multidrug resistance-asso	no	N/A	0.922	0.069	0.364	2e-12
Q5T3U5	1492	Multidrug resistance-asso	no	N/A	0.718	0.049	0.418	1e-11
Q96J66	1382	ATP-binding cassette sub-	no	N/A	0.737	0.054	0.421	1e-09
Q54U44	1323	ABC transporter C family	yes	N/A	0.524	0.040	0.444	1e-08
Q54VC1	1436	ABC transporter C family	no	N/A	0.776	0.055	0.345	3e-08

>sp|O15440|MRP5_HUMAN Multidrug resistance-associated protein 5 OS=Homo sapiens GN=ABCC5 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 7   NITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTL 66
           N T  +GNET    SD +  NP    Y ++YA ++ ++++   +R  +F K  L+AS  L
Sbjct: 890 NTTVTRGNETSV--SDSMKDNPHMQYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRL 947

Query: 67  HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct: 948 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 982

Acts as a multispecific organic anion pump which can transport nucleotide analogs.
Homo sapiens (taxid: 9606)

>sp|Q9R1X5|MRP5_MOUSE Multidrug resistance-associated protein 5 OS=Mus musculus GN=Abcc5 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 7   NITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTL 66
           N T  QGN +  + SD +  NP    Y ++YA ++ ++++   +R  +F K  L+AS  L
Sbjct: 889 NSTVYQGNRS--FVSDSMKDNPFMQYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRL 946

Query: 67  HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct: 947 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 981

Acts as a multispecific organic anion pump which can transport nucleotide analogs.

Mus musculus (taxid: 10090)

>sp|Q9QYM0|MRP5_RAT Multidrug resistance-associated protein 5 OS=Rattus norvegicus GN=Abcc5 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 2/95 (2%)

Query: 7   NITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTL 66
           N T  +GN +    SD +  NP    Y ++YA ++ ++++   +R  +F K  L+AS  L
Sbjct: 889 NSTVFEGNRSSV--SDSMRDNPFLQYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRL 946

Query: 67  HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct: 947 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 981

Acts as a multispecific organic anion pump which can transport nucleotide analogs.

Rattus norvegicus (taxid: 10116)

>sp|Q96J65|MRP9_HUMAN Multidrug resistance-associated protein 9 OS=Homo sapiens GN=ABCC12 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 59/90 (65%), Gaps = 1/90 (1%)

Query: 12  QGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLF 71
           QGN T+      + A+   ++YQ VY +++  +++  + + F+FTK  L AS +LH  +F
Sbjct: 831 QGNRTMCEVG-AVLADIGQHVYQWVYTASMVFMLVFGVTKGFVFTKTTLMASSSLHDTVF 889

Query: 72  KKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
            K+L SP+SFF+ TP+GR+ N F+KDM E+
Sbjct: 890 DKILKSPMSFFDTTPTGRLMNRFSKDMDEL 919

Probable transporter.

Homo sapiens (taxid: 9606)

>sp|Q6Y306|MRP9_RAT Multidrug resistance-associated protein 9 OS=Rattus norvegicus GN=Abcc12 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 6   QNITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHT 65
           Q I   Q NET    +  +  +   +MYQ VY +++  ++   +++ F FT   L AS +
Sbjct: 822 QVICAPQSNETACNVNQTLQ-DTKHHMYQLVYIASMMSVLTFGIIKGFTFTNTTLMASSS 880

Query: 66  LHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           LH  +F K++ SP+SFF+ TP+GR+ N F+KDM E+
Sbjct: 881 LHNRVFNKIVSSPMSFFDTTPTGRLMNRFSKDMDEL 916

Probable transporter.

Rattus norvegicus (taxid: 10116)

>sp|Q80WJ6|MRP9_MOUSE Multidrug resistance-associated protein 9 OS=Mus musculus GN=Abcc12 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 6   QNITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHT 65
           Q +   Q N+T     D    +   +MYQ VY +++  +++  +++ F FT   L AS +
Sbjct: 822 QVVCASQNNKTACNV-DQTLQDTKHHMYQLVYIASMVSVLMFGIIKGFTFTNTTLMASSS 880

Query: 66  LHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           LH  +F K++ SP+SFF+ TP+GR+ N F+KDM E+
Sbjct: 881 LHNRVFNKIVRSPMSFFDTTPTGRLMNRFSKDMDEL 916

Probable transporter.

Mus musculus (taxid: 10090)

>sp|Q5T3U5|MRP7_HUMAN Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 25   NANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEE 84
            N + D   Y TVYA+  G+  L +LLR+ +F    L+A+ TLH  L  ++L +P++FF  
Sbjct: 959  NGSSDIRFYLTVYATIAGVNSLCTLLRAVLFAAGTLQAAATLHRRLLHRVLMAPVTFFNA 1018

Query: 85   TPSGRIQNYFTKDM 98
            TP+GRI N F+ D+
Sbjct: 1019 TPTGRILNRFSSDV 1032

ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion.

Homo sapiens (taxid: 9606)

>sp|Q96J66|ABCCB_HUMAN ATP-binding cassette sub-family C member 11 OS=Homo sapiens GN=ABCC11 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 41/76 (53%)

Query: 23  HINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFF 82
           +I  NP    YQ VY     ++I   +  S IFTKV  KAS  LH  LF K+   P+SFF
Sbjct: 852 NIADNPQLSFYQLVYGLNALLLICVGVCSSGIFTKVTRKASTALHNKLFNKVFRCPMSFF 911

Query: 83  EETPSGRIQNYFTKDM 98
           +  P GR+ N F  D+
Sbjct: 912 DTIPIGRLLNCFAGDL 927

Participates in physiological processes involving bile acids, conjugated steroids and cyclic nucleotides. Enhances the cellular extrusion of cAMP and cGMP. Stimulates the ATP-dependent uptake of a range of physiological and synthetic lipophilic anions, including the glutathione S-conjugates leukotriene C4 and dinitrophenyl S-glutathione, steroid sulfates such as dehydroepiandrosterone 3-sulfate (DHEAS) and estrone 3-sulfate, glucuronides such as estradiol 17-beta-D-glucuronide (E(2)17betaG), the monoanionic bile acids glycocholate and taurocholate, and methotrexate. Probably functions to secrete earwax.

Homo sapiens (taxid: 9606)

>sp|Q54U44|ABCCC_DICDI ABC transporter C family member 12 OS=Dictyostelium discoideum GN=abcC12 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 41/54 (75%)

Query: 45  ILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDM 98
           I+ +++R+F F + A++A+H++H  LF  +L  P+SFF++TP GRI N FT+D+
Sbjct: 781 IIVTVVRTFSFFEYAVRAAHSIHHELFNALLKKPMSFFDQTPLGRIINRFTRDL 834

Dictyostelium discoideum (taxid: 44689)

>sp|Q54VC1|ABCCF_DICDI ABC transporter C family member 15 OS=Dictyostelium discoideum GN=abcC15 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 22  DHIN-ANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLS 80
           D +N + P    Y  +Y + IG  + T  +R  +  K+   ++ TLH  L K ++ +PL+
Sbjct: 905 DRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLT 964

Query: 81  FFEETPSGRIQNYFTKDMFEV 101
           FFE+ P GRI N F KD+ ++
Sbjct: 965 FFEQNPVGRILNRFGKDISDI 985

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
242007214	1348	multidrug resistance-associated protein,	0.893	0.068	0.5	2e-19
383858955	3134	PREDICTED: sodium leak channel non-selec	0.902	0.029	0.515	4e-19
350424274	3146	PREDICTED: sodium leak channel non-selec	0.902	0.029	0.505	1e-18
307203917	1330	Multidrug resistance-associated protein	0.864	0.066	0.5	2e-18
340723232	3140	PREDICTED: sodium leak channel non-selec	0.902	0.029	0.494	5e-18
332026703	3146	Sodium leak channel non-selective protei	0.902	0.029	0.505	7e-18
307176278	3147	Sodium leak channel non-selective protei	0.902	0.029	0.463	2e-17
328788957	2991	PREDICTED: sodium leak channel non-selec	0.902	0.031	0.463	1e-16
321461626	1420	ABC protein, subfamily ABCC [Daphnia pul	0.941	0.068	0.454	1e-16
345323532	1257	PREDICTED: multidrug resistance-associat	0.902	0.073	0.442	2e-16

>gi|242007214|ref|XP_002424437.1| multidrug resistance-associated protein, putative [Pediculus humanus corporis] gi|212507837|gb|EEB11699.1| multidrug resistance-associated protein, putative [Pediculus humanus corporis]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 2/94 (2%)

Query: 8   ITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLH 67
           IT+   NET+   S +IN NPD Y Y   YAS IG+I+LT + R F++ K+ ++AS  LH
Sbjct: 807 ITDPSTNETII--SKNINDNPDLYFYMKTYASIIGLIVLTCIARGFVYIKITIRASDVLH 864

Query: 68  AVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
             LF+K+L+SP+S+FE T  G IQN F+KDM E+
Sbjct: 865 RKLFQKILHSPMSYFERTSIGIIQNLFSKDMDEI 898

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858955|ref|XP_003704964.1| PREDICTED: sodium leak channel non-selective protein-like [Megachile rotundata]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 65/95 (68%), Gaps = 2/95 (2%)

Query: 7   NITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTL 66
           N+T ++ NET    SD++N NPDF  YQ VYAS IG+I+ TSLLR    T   +KAS  L
Sbjct: 869 NVTNLETNETTV--SDNLNDNPDFTYYQNVYASCIGVILFTSLLRGLAITYTTIKASTAL 926

Query: 67  HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           H  +F K++ + L+FFE TP GRIQN F++D+ EV
Sbjct: 927 HNKVFNKIIRTTLTFFETTPIGRIQNIFSRDIDEV 961

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424274|ref|XP_003493742.1| PREDICTED: sodium leak channel non-selective protein-like [Bombus impatiens]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 67/95 (70%), Gaps = 2/95 (2%)

Query: 7   NITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTL 66
           N+T+   N+TVT  S+++N NP++  YQ +Y   IG+I+LTSLLR F      +KAS TL
Sbjct: 882 NVTDPNTNKTVT--SNNLNDNPNYSYYQNIYIGCIGVILLTSLLRGFAIMYATIKASTTL 939

Query: 67  HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           H  +FKKM+ S ++FFE TP GRIQN F++D+ EV
Sbjct: 940 HNQVFKKMIKSAVTFFETTPIGRIQNIFSRDIDEV 974

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203917|gb|EFN82824.1| Multidrug resistance-associated protein 5 [Harpegnathos saltator]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 5/94 (5%)

Query: 13  GNETV-----TYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLH 67
           GN T+     T YS++IN NPDF  YQ +YA  IG I+LTS +R F+     +KA+ TLH
Sbjct: 786 GNVTISGSNMTIYSENINDNPDFSYYQNIYAMCIGGILLTSFIRGFVIMFATIKAATTLH 845

Query: 68  AVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
               +K++ SPL  FE TPSGRIQN F++D+ EV
Sbjct: 846 NTFVRKLIGSPLKLFETTPSGRIQNVFSRDIDEV 879

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723232|ref|XP_003399996.1| PREDICTED: sodium leak channel non-selective protein-like [Bombus terrestris]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 66/95 (69%), Gaps = 2/95 (2%)

Query: 7   NITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTL 66
           N+T+   N+TVT  S+++N NP++  YQ +Y   IG+I+LTSLLR        +KAS TL
Sbjct: 876 NVTDPNTNKTVT--SNNLNDNPNYSYYQDIYIGCIGVILLTSLLRGLAIMYATIKASTTL 933

Query: 67  HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           H  +FKKM+ S ++FFE TP GRIQN F++D+ EV
Sbjct: 934 HNQVFKKMIKSAVTFFETTPIGRIQNIFSRDIDEV 968

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026703|gb|EGI66812.1| Sodium leak channel non-selective protein [Acromyrmex echinatior]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 63/95 (66%), Gaps = 2/95 (2%)

Query: 7   NITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTL 66
           N+T    N+TV  YS+ INANPDF  Y+ +Y + I  I+LTS LR  +     +KAS TL
Sbjct: 874 NVTIPGTNDTV--YSEDINANPDFPFYRDIYGACIIGILLTSFLRGLVIMFATIKASTTL 931

Query: 67  HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           H     K++ SPLSFFE TPSGRIQN F++D+ E+
Sbjct: 932 HNTFLHKIISSPLSFFETTPSGRIQNVFSRDIDEI 966

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176278|gb|EFN65909.1| Sodium leak channel non-selective protein [Camponotus floridanus]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 2/95 (2%)

Query: 7   NITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTL 66
           N+T    N+T+  Y + INANPDF  Y+ +Y++ I  I+LTS +R        +KAS TL
Sbjct: 878 NVTVPGSNDTI--YVEDINANPDFSFYRNIYSACIAAILLTSFIRGLAIMFTTIKASTTL 935

Query: 67  HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           H +  +K++ SPL FFE TPSGRIQN F++D+ E+
Sbjct: 936 HNMFLRKIIGSPLIFFESTPSGRIQNIFSRDIDEI 970

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788957|ref|XP_397384.3| PREDICTED: sodium leak channel non-selective protein [Apis mellifera]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 65/95 (68%), Gaps = 2/95 (2%)

Query: 7   NITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTL 66
           NI +   N+T++  S+++N NP++  YQ +Y   IGII+LTSLLR  +     + AS TL
Sbjct: 881 NIIDSNNNKTIS--SNNLNDNPNYSYYQNIYIGCIGIILLTSLLRGLVIMYATINASTTL 938

Query: 67  HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           H  +FKK++ + L+FFE TP GRIQN F++D+ EV
Sbjct: 939 HNKVFKKIIKTTLTFFETTPIGRIQNIFSRDIDEV 973

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321461626|gb|EFX72656.1| ABC protein, subfamily ABCC [Daphnia pulex]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 62/99 (62%), Gaps = 2/99 (2%)

Query: 3   NLFQNITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKA 62
           N   N T + GNET  Y S  +  +PD   YQ++Y + I +I+LTSLLRSF F K  L+A
Sbjct: 867 NGVTNATRMVGNETEYYMS--VTTHPDVQFYQSIYGAFILVILLTSLLRSFSFMKTCLRA 924

Query: 63  SHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           S  +H  LF K+   P+ FF+ TP GRI N F++D+ E+
Sbjct: 925 SSAIHDKLFVKIFCCPMRFFDSTPVGRIINIFSRDLDEI 963

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345323532|ref|XP_001505267.2| PREDICTED: multidrug resistance-associated protein 5 [Ornithorhynchus anatinus]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 63/95 (66%), Gaps = 2/95 (2%)

Query: 7   NITEVQGNETVTYYSDHINANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTL 66
           N T ++GNET+   SD +  NP    Y ++YA ++G+I++   +R  +F K  L+AS  L
Sbjct: 845 NTTVLRGNETLV--SDSMKDNPHMRYYASIYALSMGVIMILKAIRGVVFVKGTLRASSRL 902

Query: 67  HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
           H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct: 903 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 937

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
UNIPROTKB|Q86UX3	1394	ABCC5 "Multidrug resistance-as	0.902	0.066	0.421	6.3e-13
UNIPROTKB|O15440	1437	ABCC5 "Multidrug resistance-as	0.902	0.064	0.421	6.5e-13
ZFIN|ZDB-GENE-050517-25	1368	abcc12 "ATP-binding cassette,	0.854	0.064	0.409	1.6e-12
MGI|MGI:1351644	1436	Abcc5 "ATP-binding cassette, s	0.902	0.064	0.410	2.2e-12
UNIPROTKB|E1BXT6	1435	ABCC5 "Uncharacterized protein	0.902	0.064	0.410	2.8e-12
UNIPROTKB|F1P857	1438	ABCC5 "Uncharacterized protein	0.902	0.064	0.410	7.6e-12
UNIPROTKB|J9P1Y1	173	ABCC12 "Uncharacterized protei	0.864	0.514	0.388	8.2e-12
RGD|70913	1436	Abcc5 "ATP-binding cassette, s	0.902	0.064	0.4	1.2e-11
UNIPROTKB|Q9QYM0	1436	Abcc5 "Multidrug resistance-as	0.902	0.064	0.4	1.2e-11
UNIPROTKB|F1MZD4	1183	Bt.104466 "Uncharacterized pro	0.902	0.078	0.4	1.6e-11

UNIPROTKB|Q86UX3 ABCC5 "Multidrug resistance-associated protein 5" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 6.3e-13, P = 6.3e-13
 Identities = 40/95 (42%), Positives = 53/95 (55%)

Query:     7 NITEVQGNETVTYYSDHINANPDFYMYQTVYAXXXXXXXXXXXXRSFIFTKVALKASHTL 66
             N T  +GNET    SD +  NP    Y ++YA            R  +F K  L+AS  L
Sbjct:   890 NTTVTRGNETSV--SDSMKDNPHMQYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRL 947

Query:    67 HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
             H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct:   948 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 982

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O15440 ABCC5 "Multidrug resistance-associated protein 5" [Homo sapiens (taxid:9606)]

 Score = 185 (70.2 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 40/95 (42%), Positives = 53/95 (55%)

Query:     7 NITEVQGNETVTYYSDHINANPDFYMYQTVYAXXXXXXXXXXXXRSFIFTKVALKASHTL 66
             N T  +GNET    SD +  NP    Y ++YA            R  +F K  L+AS  L
Sbjct:   890 NTTVTRGNETSV--SDSMKDNPHMQYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRL 947

Query:    67 HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
             H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct:   948 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 982

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0008514 "organic anion transmembrane transporter activity" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0030203 "glycosaminoglycan metabolic process" evidence=TAS

GO:0030212 "hyaluronan metabolic process" evidence=TAS

GO:0030213 "hyaluronan biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0015711 "organic anion transport" evidence=TAS

ZFIN|ZDB-GENE-050517-25 abcc12 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 36/88 (40%), Positives = 51/88 (57%)

Query:    14 NETVTYYSDHINANPDFYMYQTVYAXXXXXXXXXXXXRSFIFTKVALKASHTLHAVLFKK 73
             +   T  S +I+ NPD   YQ VY             + + FTKV L++S  LH  +FK+
Sbjct:   828 SSNATSNSGNISENPDLSFYQMVYGVIIIAMIVLSILKGYTFTKVTLRSSSKLHDTMFKR 887

Query:    74 MLYSPLSFFEETPSGRIQNYFTKDMFEV 101
             +L SP+SFF+ TP+GR+ N F+KD  EV
Sbjct:   888 ILGSPMSFFDTTPTGRLVNRFSKDQDEV 915

GO:0016887 "ATPase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1351644 Abcc5 "ATP-binding cassette, sub-family C (CFTR/MRP), member 5" [Mus musculus (taxid:10090)]

 Score = 180 (68.4 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 39/95 (41%), Positives = 53/95 (55%)

Query:     7 NITEVQGNETVTYYSDHINANPDFYMYQTVYAXXXXXXXXXXXXRSFIFTKVALKASHTL 66
             N T  QGN +  + SD +  NP    Y ++YA            R  +F K  L+AS  L
Sbjct:   889 NSTVYQGNRS--FVSDSMKDNPFMQYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRL 946

Query:    67 HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
             H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct:   947 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 981

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E1BXT6 ABCC5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 39/95 (41%), Positives = 53/95 (55%)

Query:     7 NITEVQGNETVTYYSDHINANPDFYMYQTVYAXXXXXXXXXXXXRSFIFTKVALKASHTL 66
             N T   GN+TV   S+ +  NP  + Y  +YA            R  +F K  L+AS  L
Sbjct:   888 NTTVTLGNDTVI--SNSMKDNPHMHYYAGIYALSMAVMLILKAVRGVVFVKGTLRASSRL 945

Query:    67 HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
             H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct:   946 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 980

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1P857 ABCC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 175 (66.7 bits), Expect = 7.6e-12, P = 7.6e-12
 Identities = 39/95 (41%), Positives = 52/95 (54%)

Query:     7 NITEVQGNETVTYYSDHINANPDFYMYQTVYAXXXXXXXXXXXXRSFIFTKVALKASHTL 66
             N T  QGN+T    S  +  NP    Y ++YA            R  +F K  L+AS  L
Sbjct:   890 NTTVTQGNKTSM--SSSMKDNPLMQYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRL 947

Query:    67 HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
             H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct:   948 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 982

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J9P1Y1 ABCC12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 35/90 (38%), Positives = 51/90 (56%)

Query:    12 QGNETVTYYSDHINANPDFYMYQTVYAXXXXXXXXXXXXRSFIFTKVALKASHTLHAVLF 71
             QGN++       + A+   ++YQ VYA            + F FTK  L AS +LH  +F
Sbjct:     6 QGNKSACEIGA-VLADTGQHVYQWVYAGSMLSVLTFSVIKGFTFTKTTLMASSSLHDHVF 64

Query:    72 KKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
              K+L SP+SFF+  P+GR+ N F+KDM E+
Sbjct:    65 DKILRSPMSFFDRMPTGRLMNRFSKDMDEL 94

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|70913 Abcc5 "ATP-binding cassette, subfamily C (CFTR/MRP), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 38/95 (40%), Positives = 52/95 (54%)

Query:     7 NITEVQGNETVTYYSDHINANPDFYMYQTVYAXXXXXXXXXXXXRSFIFTKVALKASHTL 66
             N T  +GN +    SD +  NP    Y ++YA            R  +F K  L+AS  L
Sbjct:   889 NSTVFEGNRSSV--SDSMRDNPFLQYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRL 946

Query:    67 HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
             H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct:   947 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 981

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEP

GO:0032868 "response to insulin stimulus" evidence=IEP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|Q9QYM0 Abcc5 "Multidrug resistance-associated protein 5" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 38/95 (40%), Positives = 52/95 (54%)

Query:     7 NITEVQGNETVTYYSDHINANPDFYMYQTVYAXXXXXXXXXXXXRSFIFTKVALKASHTL 66
             N T  +GN +    SD +  NP    Y ++YA            R  +F K  L+AS  L
Sbjct:   889 NSTVFEGNRSSV--SDSMRDNPFLQYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRL 946

Query:    67 HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
             H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct:   947 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 981

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

UNIPROTKB|F1MZD4 Bt.104466 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 38/95 (40%), Positives = 52/95 (54%)

Query:     7 NITEVQGNETVTYYSDHINANPDFYMYQTVYAXXXXXXXXXXXXRSFIFTKVALKASHTL 66
             N T  Q N T    S+ +  NP  + Y ++YA            R  +F K  L+AS  L
Sbjct:   634 NTTVTQENRTSV--SNSMKDNPLMHYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRL 691

Query:    67 HAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
             H  LF+++L SP+ FF+ TP+GRI N F+KDM EV
Sbjct:   692 HDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEV 726

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	103
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	3e-08
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	6e-08
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	2e-07
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	7e-07
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	3e-06
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	4e-06
pfam00664	274	pfam00664, ABC_membrane, ABC transporter transmemb	6e-05

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 33   YQTVYAS-TIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQ 91
            Y  +YA  + G +++T LL S+     +L A+  LH  +   +L +P+SFF   P GRI 
Sbjct: 955  YNLIYALLSFGQVLVT-LLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRII 1013

Query: 92   NYFTKDMFEVYR 103
            N F KD+ ++ R
Sbjct: 1014 NRFAKDLGDIDR 1025

Length = 1622

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 48.4 bits (115), Expect = 6e-08
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 60   LKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV 101
            ++AS  LH  L    L SP+SFFE TPSG + N F+K++  V
Sbjct: 1034 IQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTV 1075

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 25   NANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEE 84
            + +P FY+   VYA      +  +   SF     +L A+  LH  +   +L +P+ FF  
Sbjct: 946  SYSPGFYIV--VYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT 1003

Query: 85   TPSGRIQNYFTKDMFEVYR 103
             P+GR+ N F+KD+ ++ R
Sbjct: 1004 NPTGRVINRFSKDIGDIDR 1022

Length = 1495

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 18/78 (23%), Positives = 36/78 (46%)

Query: 24  INANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFE 83
           +    +      +      +  +   L+S++ +++  K    L   LF+K+L  PLSFF+
Sbjct: 45  LADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD 104

Query: 84  ETPSGRIQNYFTKDMFEV 101
           +  SG + +  T D+  V
Sbjct: 105 KAKSGDLISRLTNDVEAV 122

Length = 567

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 33   YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQN 92
            Y  VY   + +   +  LR F+  +   + S  +H  L + +    +SFF+ TP GRI N
Sbjct: 1000 YLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILN 1059

Query: 93   YFTKDM 98
             F++D+
Sbjct: 1060 RFSRDI 1065

Length = 1560

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 34  QTVYASTIGIIIL---TSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRI 90
             V    IG+ +L    S + +++ + V+ K    +   +F+K+L  P+SFF+  P+G +
Sbjct: 54  WWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTL 113

Query: 91  QNYFTKDMFEV 101
            +  T D  +V
Sbjct: 114 LSRITFDSEQV 124

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 11/73 (15%), Positives = 27/73 (36%)

Query: 26  ANPDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEET 85
                     +  +   +  L      ++  ++  +    L   L +++L  P+SFF+  
Sbjct: 36  ERSSLISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTN 95

Query: 86  PSGRIQNYFTKDM 98
             G + +  T D+
Sbjct: 96  SVGELTSRLTNDV 108

This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG0054|consensus	1381		99.35
PLN03232	1495	ABC transporter C family member; Provisional	98.95
PLN03130	1622	ABC transporter C family member; Provisional	98.94
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.93
KOG0058|consensus	716		98.78
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.7
PTZ00243	1560	ABC transporter; Provisional	98.69
PF00664	275	ABC_membrane: ABC transporter transmembrane region	98.55
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.42
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.4
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.4
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.39
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.36
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.35
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.34
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.32
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.21
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.19
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.17
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.17
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.15
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.13
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.13
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.11
KOG0055|consensus	1228		98.09
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.03
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.03
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.02
KOG0055|consensus	1228		98.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.99
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.98
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.95
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.81
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	97.49
COG4987	573	CydC ABC-type transport system involved in cytochr	97.07
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.06
PLN03232	1495	ABC transporter C family member; Provisional	97.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	96.95
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	96.91
COG4988	559	CydD ABC-type transport system involved in cytochr	96.82
PLN03130	1622	ABC transporter C family member; Provisional	96.64
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	96.43
KOG0057|consensus	591		96.26
PTZ00243	1560	ABC transporter; Provisional	95.83
KOG0054|consensus	1381		93.35

>KOG0054|consensus

Probab=99.35  E-value=3.1e-12  Score=105.70  Aligned_cols=76  Identities=45%  Similarity=0.609  Sum_probs=72.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHhC
Q psy846           28 PDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR  103 (103)
Q Consensus        28 ~~~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~~  103 (103)
                      .+..+|+++|.++++++.++..++.+++...+.++++.+|+++++++++.||+|||++|+|+++|||+.|++.+|+
T Consensus       855 ~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~  930 (1381)
T KOG0054|consen  855 VSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDV  930 (1381)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999874

>PLN03232 ABC transporter C family member; Provisional

Probab=98.95  E-value=5.3e-09  Score=88.16  Aligned_cols=73  Identities=29%  Similarity=0.459  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           30 FYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        30 ~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ...|+++|++++++..++.++..++....+.++..++|.+++++++++|++||+++++|++++|+++|++.++
T Consensus       949 ~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id 1021 (1495)
T PLN03232        949 PGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDID 1021 (1495)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999886

>PLN03130 ABC transporter C family member; Provisional

Probab=98.94  E-value=5.7e-09  Score=88.46  Aligned_cols=73  Identities=33%  Similarity=0.519  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           30 FYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        30 ~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ...|+++|++++++..++.++..++....+.++..++|.+++++++++|++||+++++|++++|+++|++.++
T Consensus       952 ~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id 1024 (1622)
T PLN03130        952 PLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDID 1024 (1622)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHH
Confidence            4567888999988889899998898999999999999999999999999999999999999999999999886

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.93  E-value=6.6e-09  Score=87.71  Aligned_cols=74  Identities=31%  Similarity=0.387  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHhC
Q psy846           30 FYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR  103 (103)
Q Consensus        30 ~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~~  103 (103)
                      ...|+++|++++++..++.++..++....+.++.+++|.+++++++++|++||+++++|++++|+++|++.+++
T Consensus      1004 ~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~ 1077 (1522)
T TIGR00957      1004 TSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDS 1077 (1522)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHH
Confidence            45677889999888888888888888899999999999999999999999999999999999999999998863

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0058|consensus

Probab=98.78  E-value=3.6e-08  Score=77.35  Aligned_cols=70  Identities=21%  Similarity=0.290  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ...++.++.++++++.+++..++...+.++..++|..+|+++++++++|||.+.+|++++|++.|+..+.
T Consensus       190 ~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs  259 (716)
T KOG0058|consen  190 ACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVS  259 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHH
Confidence            3456666778888899999999999999999999999999999999999999999999999999998764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.70  E-value=1e-07  Score=80.58  Aligned_cols=69  Identities=26%  Similarity=0.452  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           34 QTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        34 l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +++|+++.++..++.++..+++...+.++++++|.++++++++.|+.||+++++|++++||++|++.++
T Consensus       928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id  996 (1490)
T TIGR01271       928 FYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIID  996 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHH
Confidence            566666666666677788888889999999999999999999999999999999999999999999886

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=98.69  E-value=1.1e-07  Score=80.76  Aligned_cols=72  Identities=28%  Similarity=0.425  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ..|+++|+++.++..+..++..+.....+.+..+++|.++++++++.|+.||+++++|++++|+++|++.++
T Consensus       998 ~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id 1069 (1560)
T PTZ00243        998 ATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILD 1069 (1560)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHH
Confidence            456777777776666666666666667778888999999999999999999999999999999999999886

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.55  E-value=5.1e-07  Score=61.16  Aligned_cols=62  Identities=24%  Similarity=0.470  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           41 IGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        41 ~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      .++.........+...+.+.+...++|.++++++++.|.++|+++++|++++|+++|++.++
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~  112 (275)
T PF00664_consen   51 FLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIE  112 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Confidence            34444445555555678899999999999999999999999999999999999999999875

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.42  E-value=2.5e-06  Score=66.00  Aligned_cols=70  Identities=10%  Similarity=0.096  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +.++++++.++..++.++..++..+.+.+...++|.++++++++.|.++|++.++|++++|+++|++.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~  134 (588)
T PRK11174         65 PFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMH  134 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHH
Confidence            4445555666777888888888899999999999999999999999999999999999999999998875

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.40  E-value=2.3e-06  Score=66.32  Aligned_cols=67  Identities=10%  Similarity=0.016  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           36 VYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        36 i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++.++.++..++.++..++..+.+.+...++|.+++++++++|..+|++.++|++++|+++|++.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~  131 (574)
T PRK11160         65 GVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLD  131 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHH
Confidence            3445556778888888888899999999999999999999999999999999999999999999875

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.40  E-value=2.9e-06  Score=64.93  Aligned_cols=72  Identities=13%  Similarity=0.079  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ..+.++++++.++..++.++..+...+.+.+...++|.++++++++.|..+|++.++|++++|+++|++.++
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~  115 (529)
T TIGR02857        44 LPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALD  115 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHH
Confidence            344555666667778888899999999999999999999999999999999999999999999999998875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.39  E-value=1.6e-06  Score=66.90  Aligned_cols=66  Identities=12%  Similarity=0.189  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           37 YASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        37 ~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++++.++..++.++..++....+.+...++|.++++++++.|+.+|++.++|++++|+++|++.++
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~  124 (555)
T TIGR01194        59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQIN  124 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHH
Confidence            334455666778888888899999999999999999999999999999999999999999999875

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.36  E-value=4.3e-06  Score=64.73  Aligned_cols=71  Identities=11%  Similarity=0.185  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           32 MYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        32 ~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      .++++++++.++..++.++..++....+.+...++|.++++++++.|.++|++.++|++++|+++|++.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~  107 (569)
T PRK10789         37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVV  107 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHH
Confidence            34455555556667777888888888999999999999999999999999999999999999999998764

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.35  E-value=4.5e-06  Score=63.86  Aligned_cols=63  Identities=11%  Similarity=0.041  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           40 TIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        40 l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +.++..+..++..++....+.+...++|.++++++++.|..+|++.++|++++|+++|++.++
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~  124 (529)
T TIGR02868        62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQ  124 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHH
Confidence            445666777888888888999999999999999999999999999999999999999999875

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.34  E-value=3.5e-06  Score=66.85  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           34 QTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        34 l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +++++++.++..++.++...+..+.+.+...++|.++++++++.|..+|++.++|++++|+++|++.++
T Consensus       204 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~  272 (711)
T TIGR00958       204 IFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMS  272 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHH
Confidence            344455556667777788888889999999999999999999999999999999999999999998875

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.32  E-value=4e-06  Score=71.09  Aligned_cols=71  Identities=18%  Similarity=0.378  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cChhHHHHHHHhhHHHHh
Q psy846           32 MYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEE--TPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        32 ~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~--~~~G~llsr~s~D~~~I~  102 (103)
                      .|.+++++++++..++.++..++..+.+.+...++|.++|++++++|++||++  +++|++++|+++|++.+.
T Consensus       867 ~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~  939 (1466)
T PTZ00265        867 KYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLK  939 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            34455566667777788888899999999999999999999999999999986  889999999999998775

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.21  E-value=1.1e-05  Score=68.61  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           30 FYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        30 ~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ...+.+.++.++++..++.++..+++.+.+.+...++|.+++++++++|++|||+.+.|.+.++++.|++.+.
T Consensus        96 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~  168 (1466)
T PTZ00265         96 VNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVN  168 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            3344455666677788889999999999999999999999999999999999999999999999999998764

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.19  E-value=1.5e-05  Score=61.76  Aligned_cols=66  Identities=21%  Similarity=0.321  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           37 YASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        37 ~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++++.++..+..+...+.....+.+...++|.++++++++.|.++|++.++|++++|+++|++.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~  136 (592)
T PRK10790         71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIR  136 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHH
Confidence            444445666777888888889999999999999999999999999999999999999999998875

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.17  E-value=1.7e-05  Score=61.12  Aligned_cols=72  Identities=22%  Similarity=0.363  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      .++.++++++.++..+..++..++..+.+.+....+|..+++++.+.|.+++++.+.|++++|+++|++.++
T Consensus        54 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~  125 (571)
T TIGR02203        54 WWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVA  125 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHH
Confidence            334456667777888888999999999999999999999999999999999999999999999999998775

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.17  E-value=1.6e-05  Score=62.91  Aligned_cols=69  Identities=17%  Similarity=0.294  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +.++++++.++..++.++..++....+.+...++|.+++++++++|+.+|++.++|++++|+ +|++.+.
T Consensus       181 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~  249 (694)
T TIGR01846       181 LALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIR  249 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHH
Confidence            34445555667778888899999999999999999999999999999999999999999999 6888764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.15  E-value=1.5e-05  Score=61.49  Aligned_cols=58  Identities=16%  Similarity=0.196  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           45 ILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        45 ~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      .+..++..++..+.+.+...++|.++++++++.|+++|++.++|++++|+++|++.+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~  119 (547)
T PRK10522         62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNIT  119 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHH
Confidence            4456677888888999999999999999999999999999999999999999998764

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.13  E-value=2.1e-05  Score=60.81  Aligned_cols=70  Identities=26%  Similarity=0.319  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +...++++.++..++.+...+...+.+.+...++|.++++++++.|+++|+++++|++++|+++|++.++
T Consensus        54 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~  123 (567)
T COG1132          54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVS  123 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHH
Confidence            3444455555667777777787888889999999999999999999999999999999999999998875

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.13  E-value=1.7e-05  Score=62.76  Aligned_cols=67  Identities=21%  Similarity=0.301  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           35 TVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        35 ~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++++++.++..++.++..++..+.+.+...++|.++++++++.|+.+|++.++|++++|++ |.+.+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~  266 (708)
T TIGR01193       200 IGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSII  266 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHH
Confidence            3444455667778888888889999999999999999999999999999999999999998 676653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.11  E-value=2.2e-05  Score=61.95  Aligned_cols=69  Identities=14%  Similarity=0.256  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +.++++++.++..++.++..+.....+.+...++|.+++++++++|+.||++.++|++++|+. |++.+.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~  246 (686)
T TIGR03797       178 IALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIR  246 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHH
Confidence            344555566677888888889999999999999999999999999999999999999999997 566654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>KOG0055|consensus

Probab=98.09  E-value=2.9e-05  Score=64.53  Aligned_cols=70  Identities=16%  Similarity=0.375  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cChhHHHHHHHhhHHHHh
Q psy846           32 MYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEE--TPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        32 ~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~--~~~G~llsr~s~D~~~I~  102 (103)
                      .|..+|+++++...+..+++.+++...+.+...++|..+|+++++.+++|||.  +. |.+.+|+.+|...+.
T Consensus       708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr  779 (1228)
T KOG0055|consen  708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVR  779 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHH
Confidence            47788899999999999999999999999999999999999999999999965  55 999999999987664

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.03  E-value=4.6e-05  Score=58.85  Aligned_cols=70  Identities=17%  Similarity=0.287  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +..+++++.++..+..++..+...+.+.+....+|..+++++++.|..+|++.+.|++++|+++|++.++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~  129 (576)
T TIGR02204        60 YFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQ  129 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHH
Confidence            3444555555666777788888889999999999999999999999999999999999999999998875

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.03  E-value=3.8e-05  Score=60.84  Aligned_cols=67  Identities=16%  Similarity=0.226  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHH
Q psy846           34 QTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV  101 (103)
Q Consensus        34 l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I  101 (103)
                      .++++++.++..++.++..++....+.+...+++.++++++++.|+++|++.++|++++|++.| +.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i  263 (710)
T TIGR03796       197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQV  263 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHH
Confidence            3444555566777888888899999999999999999999999999999999999999999888 444

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.02  E-value=4.7e-05  Score=59.27  Aligned_cols=61  Identities=13%  Similarity=0.171  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           42 GIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        42 ~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++..+..+...........+...++|.+++++++++|+++|+++++|++++|+++|++.++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~  127 (585)
T TIGR01192        67 VFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLF  127 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHH
Confidence            3444444454555556666666777789999999999999999999999999999988764

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>KOG0055|consensus

Probab=98.00  E-value=1.2e-05  Score=66.71  Aligned_cols=75  Identities=7%  Similarity=0.203  Sum_probs=66.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHhC
Q psy846           29 DFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVYR  103 (103)
Q Consensus        29 ~~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~~  103 (103)
                      ...-+...|..+++...+..+++..++...+.|...++|.+.++.+++.+++|||++.+|++..++++|++.+.+
T Consensus        69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d  143 (1228)
T KOG0055|consen   69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQD  143 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHH
Confidence            444556667777778888889999999999999999999999999999999999999999999999999988753

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.99  E-value=5.9e-05  Score=60.17  Aligned_cols=66  Identities=21%  Similarity=0.370  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHH
Q psy846           35 TVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV  101 (103)
Q Consensus        35 ~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I  101 (103)
                      .+++..++.+.+...++.+.....+.+...++-.++++|++++|+.||+++++|++++|+.. ++.|
T Consensus       198 ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~e-l~~I  263 (709)
T COG2274         198 IGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRE-LEQI  263 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHHH-HHHH
Confidence            44555667888889999999999999999999999999999999999999999999999875 4444

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.98  E-value=6.1e-05  Score=58.27  Aligned_cols=66  Identities=26%  Similarity=0.339  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           37 YASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        37 ~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++++.++..++.++..++..+.+.+...++|..+++++.+.|..+|++.+.|++++|+++|++.+.
T Consensus        71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~  136 (582)
T PRK11176         71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVA  136 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHH
Confidence            344556677777888888889999999999999999999999999999999999999999998765

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.95  E-value=8.9e-05  Score=58.63  Aligned_cols=66  Identities=23%  Similarity=0.246  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           35 TVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        35 ~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++++++.++..++.++..++..+.+.+...++|..++++++++|+.| ++.++|++++|+ +|++.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~  256 (694)
T TIGR03375       191 IGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVR  256 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHH
Confidence            33444455677788888899999999999999999999999999998 789999999999 7888765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.81  E-value=0.00025  Score=55.12  Aligned_cols=69  Identities=14%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           34 QTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        34 l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +++++++.++..+..+.......+...+....++.++++++++.|..+|++.+.|++++|+++|++.+.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~  127 (588)
T PRK13657         59 LAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALF  127 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHH
Confidence            334444444444444444445555666666677779999999999999999999999999999988663

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=97.49  E-value=0.00029  Score=55.78  Aligned_cols=67  Identities=9%  Similarity=0.048  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           35 TVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        35 ~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++++++.++..+..+....+......+....+|...+++....++.+||+ ++|++++|+++|++.+.
T Consensus       143 l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~  209 (659)
T TIGR00954       143 LIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFC  209 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHH
Confidence            33444555666667777777788888999999999999988889999986 88999999999998875

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.0031  Score=48.97  Aligned_cols=64  Identities=13%  Similarity=0.138  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           39 STIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        39 ~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++++.+.+.-|+.++.......++..++|.++|+++...+..-..+.++|++++|+..|++.++
T Consensus        66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld  129 (573)
T COG4987          66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALD  129 (573)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHh
Confidence            4567777788888888888889999999999999999999999999999999999999999886

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.06  E-value=0.007  Score=52.15  Aligned_cols=64  Identities=14%  Similarity=0.104  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           39 STIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        39 ~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++.++..++.....+...+.+.++-..++..+|+++++++...+++..+|+++++++.|++.+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~  429 (1522)
T TIGR00957       366 VCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFM  429 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHH
Confidence            3334455554445556678899999999999999999999999999999999999999998764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03232 ABC transporter C family member; Provisional

Probab=97.00  E-value=0.0066  Score=52.19  Aligned_cols=48  Identities=25%  Similarity=0.306  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           55 FTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        55 ~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ..+.+.+....++..+|++.++.+..++++..+|+++++++.|++.++
T Consensus       365 ~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~  412 (1495)
T PLN03232        365 VGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQ  412 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHH
Confidence            357788888888889999999999999999999999999999999875

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=96.95  E-value=0.0069  Score=52.10  Aligned_cols=65  Identities=11%  Similarity=0.193  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           38 ASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        38 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      .++.++..++.....+.....+.+.-..+...+|+++++++...+++.++|+++++++.|++.++
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~  193 (1490)
T TIGR01271       129 CLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFD  193 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHH
Confidence            33344555555555566667788888888888899999999999999999999999999998875

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=96.91  E-value=0.01  Score=45.89  Aligned_cols=66  Identities=17%  Similarity=0.154  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           32 MYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        32 ~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      .++++++++.++..++.++..++..+.+.+...++|.++++++++.|...     .+...+++.+|++.++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~  112 (544)
T TIGR01842        47 MLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLR  112 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHH
Confidence            34455555666777888888889999999999999999999999999843     3567888899988775

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.018  Score=45.03  Aligned_cols=72  Identities=13%  Similarity=0.159  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ..++++++++.+++.++.+.........+..+-.++|+.+++++.+.+..+...+++|+....+...++.++
T Consensus        40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~  111 (559)
T COG4988          40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLE  111 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHH
Confidence            445566667778889999999898999999999999999999999999999999999999999999888764

>PLN03130 ABC transporter C family member; Provisional

Probab=96.64  E-value=0.019  Score=49.90  Aligned_cols=48  Identities=27%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           55 FTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        55 ~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ..+.+.+.-..++..+|++.++++...+++.++|+++++++.|++.++
T Consensus       365 ~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~  412 (1622)
T PLN03130        365 VMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQ  412 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHH
Confidence            346778888888889999999999999999999999999999999875

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=96.43  E-value=0.0057  Score=46.45  Aligned_cols=59  Identities=24%  Similarity=0.345  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHH
Q psy846           43 IIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV  101 (103)
Q Consensus        43 ~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I  101 (103)
                      +-.+...+........+.+...++|.++.++++..|+..+++.++++++.++++|+..|
T Consensus        60 lf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~I  118 (546)
T COG4615          60 LFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNI  118 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccce
Confidence            33444455666677889999999999999999999999999999999999999998765

>KOG0057|consensus

Probab=96.26  E-value=0.039  Score=43.21  Aligned_cols=69  Identities=20%  Similarity=0.289  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHH
Q psy846           33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEV  101 (103)
Q Consensus        33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I  101 (103)
                      -+..|+...+...++..++...+.++..+..++.-.++|.+.+.+++++|.+..+|.+.+.+..-...|
T Consensus        76 ~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI  144 (591)
T KOG0057|consen   76 LLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAI  144 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHH
Confidence            456777788888999999999999999999999999999999999999999999999988887665544

>PTZ00243 ABC transporter; Provisional

Probab=95.83  E-value=0.094  Score=45.61  Aligned_cols=63  Identities=21%  Similarity=0.239  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--ccChhHHHHHHHhhHHHHh
Q psy846           40 TIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFE--ETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        40 l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~--~~~~G~llsr~s~D~~~I~  102 (103)
                      +.+++.++.....+...+.+.+.-..+...+|+++++++...+.  +..+|+++|.++.|++.+.
T Consensus       294 ~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~  358 (1560)
T PTZ00243        294 TQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERIN  358 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHH
Confidence            33455555555666677888888888999999999999887775  5688999999999999875

>KOG0054|consensus

Probab=93.35  E-value=0.49  Score=40.94  Aligned_cols=63  Identities=21%  Similarity=0.178  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           40 TIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        40 l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ..+++.++.....+...+.+.+.-..+-..+|++.++++-.--..+.+|+++|-++.|++.++
T Consensus       251 ~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~  313 (1381)
T KOG0054|consen  251 ASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLS  313 (1381)
T ss_pred             HHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHH
Confidence            335556555555556667777777778888899999999888888899999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-07
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	4e-07
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	1e-05
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	6e-04

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 22  DHINANPDFYMYQTVYASTIGIIILTSL---LRSFIFTKVALKASHTLHAVLFKKMLYSP 78
           D      D  +   +    IG++IL  +   + S+  + V+ K   T+   LF  M+  P
Sbjct: 53  DDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMP 112

Query: 79  LSFFEETPSGRIQNYFTKDMFEV 101
           ++FF++  +G + +  T D  +V
Sbjct: 113 VAFFDKQSTGTLLSRITYDSEQV 135

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 22  DHINANPDFYMYQTVYASTIGIIILTSL---LRSFIFTKVALKASHTLHAVLFKKMLYSP 78
           D    N +    + +    +G++ +  L     S+  + V+      +   LF   ++ P
Sbjct: 53  DEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMP 112

Query: 79  LSFFEETPSGRIQNYFTKDMFEV 101
           + FF++  +G + +  T D  +V
Sbjct: 113 VRFFDQESTGGLLSRITYDSEQV 135

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 22  DHINANPDFYMYQTVYASTIGIIILTSL---LRSFIFTKVALKASHTLHAVLFKKMLYSP 78
           D +     F +          I  LTSL   L+  I   ++      L   LF+K+   P
Sbjct: 65  DVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVP 124

Query: 79  LSFFEETPSGRIQNYFTKDM 98
           + FF+ TP G I +    D+
Sbjct: 125 VGFFDRTPHGDIISRVINDV 144

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 7/83 (8%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 22  DHINANPDFYMYQTVYASTIGIIILTSLL---RSFIFTKVALKASHTLHAVLFKKMLYSP 78
                    ++   +  +    +I+   +   R ++    + K  + +   L+  +    
Sbjct: 49  ALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS 108

Query: 79  LSFFEETPSGRIQNYFTKDMFEV 101
             F+     G++ +    D+ + 
Sbjct: 109 ARFYANNQVGQVISRVINDVEQT 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.89
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.82
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.82
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.69
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.57
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.54
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.5
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.48
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.48
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.46

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.89  E-value=1.7e-08  Score=83.08  Aligned_cols=76  Identities=17%  Similarity=0.313  Sum_probs=69.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cChhHHHHHHHhhHHHHhC
Q psy846           28 PDFYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEE--TPSGRIQNYFTKDMFEVYR  103 (103)
Q Consensus        28 ~~~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~--~~~G~llsr~s~D~~~I~~  103 (103)
                      .+..+|.++|++++++..++.++..++....+.+...++|.+++++++++|++|||.  +++|++++|+++|++.+++
T Consensus       791 ~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~  868 (1321)
T 4f4c_A          791 SQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRT  868 (1321)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHH
Confidence            345677888899999999999999999999999999999999999999999999986  7899999999999998863

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.82  E-value=9e-09  Score=84.74  Aligned_cols=71  Identities=17%  Similarity=0.189  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           32 MYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        32 ~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      .+.+.+++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||++++|++++|+++|++.++
T Consensus       137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~  207 (1321)
T 4f4c_A          137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVK  207 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHH
Confidence            34566677778888899999999999999999999999999999999999999999999999999998875

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.82  E-value=1.3e-08  Score=83.52  Aligned_cols=72  Identities=13%  Similarity=0.309  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ..+.++|++++++..++.++..+++.+.+.+...++|.++|++++++|++||+++++|++++|+++|++.++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~  179 (1284)
T 3g5u_A          108 TTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKIN  179 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHH
Confidence            456777888888889999999999999999999999999999999999999999999999999999998875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.69  E-value=9.2e-08  Score=73.18  Aligned_cols=73  Identities=22%  Similarity=0.363  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           30 FYMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        30 ~~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ...++++++++.++..++.++..++....+.+...++|.+++++++++|++||+++++|++++|+++|++.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~  148 (598)
T 3qf4_B           76 LPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNIN  148 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            3455667777778888889999999999999999999999999999999999999999999999999998875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.57  E-value=2.9e-07  Score=70.37  Aligned_cols=70  Identities=13%  Similarity=0.074  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +.++++++.++..++.++..++..+.+.+...++|.++++++++.|+.+|+++++|++++|+++|++.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~  134 (587)
T 3qf4_A           65 TGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQ  134 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHH
Confidence            3445555666777778888888899999999999999999999999999999999999999999998875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.54  E-value=3e-07  Score=70.08  Aligned_cols=68  Identities=9%  Similarity=0.129  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           35 TVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        35 ~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      ++++++.++..++.++..++..+.+.+...++|.+++++++++|++||++.++|++++|+++|++.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~  132 (578)
T 4a82_A           65 IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK  132 (578)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHH
Confidence            34445566777788888899999999999999999999999999999999999999999999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.50  E-value=6.4e-07  Score=68.27  Aligned_cols=67  Identities=18%  Similarity=0.284  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           36 VYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        36 i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +++++.++..++.++..++..+.+.+...++|.++++++++.|+.||+++++|++++|+++|++.++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~  136 (582)
T 3b5x_A           70 MILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVA  136 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            3556667788888888888999999999999999999999999999999999999999999998875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.48  E-value=8.6e-07  Score=67.54  Aligned_cols=67  Identities=25%  Similarity=0.335  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           36 VYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        36 i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +++++.++..++.++..+...+.+.+...++|.++++++++.|+.||+++++|++++|+++|++.++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~  136 (582)
T 3b60_A           70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA  136 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHH
Confidence            3556667778888888888999999999999999999999999999999999999999999998875

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.46  E-value=9.6e-07  Score=72.68  Aligned_cols=72  Identities=22%  Similarity=0.384  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--ccChhHHHHHHHhhHHHHh
Q psy846           31 YMYQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFE--ETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        31 ~~~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~--~~~~G~llsr~s~D~~~I~  102 (103)
                      ..|.++|++++++..+..++..+++.+.+.+...++|.++++++++.|++||+  ++++|++++|+++|++.++
T Consensus       749 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~  822 (1284)
T 3g5u_A          749 NLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVK  822 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            45667777888888888888999999999999999999999999999999998  5899999999999998775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	98.74
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	98.67

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.74  E-value=1.8e-08  Score=67.38  Aligned_cols=70  Identities=24%  Similarity=0.313  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           33 YQTVYASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        33 ~l~i~~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      +.++++++.++..++.++..++..+.+.+...++|.++++++++.|+++|+++++|++++++++|++.+.
T Consensus        58 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~  127 (319)
T d3b60a2          58 MPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA  127 (319)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhccccchhhHHHHhhcccchhhccccccccccccccccccccc
Confidence            3466677778888899999999999999999999999999999999999999999999999999998764

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.67  E-value=4.9e-08  Score=65.37  Aligned_cols=65  Identities=9%  Similarity=0.137  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHh
Q psy846           38 ASTIGIIILTSLLRSFIFTKVALKASHTLHAVLFKKMLYSPLSFFEETPSGRIQNYFTKDMFEVY  102 (103)
Q Consensus        38 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~l~ff~~~~~G~llsr~s~D~~~I~  102 (103)
                      .++.+++.++.+...++..+.+.+...++|.++++++++.|+++|+++++|++++|+++|++.++
T Consensus        68 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~  132 (323)
T d2hyda2          68 FIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK  132 (323)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhc
Confidence            34455667777888888899999999999999999999999999999999999999999998764