Psyllid ID: psy8473

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MNINLTISEHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAGSTDSSFIVKSREDRAEEELV
Secondary Structure (PSIPRED)
cccEEEEEcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccEEEccccccccccccccccccccccEEEEEcccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccHHHHHHcccccccEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccEEcHHHHHHHHHHHHcccccccHHEEccccccccccEEEEEEccccccccccccccccccccEEEHHcccccccccHHHcccccEEEcccccEcccccEEEEccccccEEEEEEEEcHHHHHHHHHccccccEEEEEEEccccccEEEEEEccHccccccEEEEccccccEEEEcccEEcHHHHHHHHHHcccccEEEEEEEccccccEEEEccccccccccEEEEEcccHHHHHHcc
Coil and Loop (DISEMBL)
mninltisehhfdkviipapfeREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKscenpaykgrtvlslpQLRLLSASlshnnipgesmlhadnnneqsNDIAIVLYtsgstgipkeyrrmyktgdygrivddihrcwssgdraiKYRRMyktgdygrivDDILLYegrtdsqvkirgnrvDLSEVEAALSKLsevdklsvlcykpgevdqvsevtseeirgvddillyegrtdsqvkirgnrvDLSEVEAALSKIsevdklsvlcykpgevdqiweapssagstdssfivksredraeeelv
Flexible Loop (DISEMBL)
mninltisehhfdkviipapferekakkkknkkkkkkkkkkkkkkkkkkkkkrrilakscenpaykgrtvlSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLytsgstgipkeYRRMYktgdygrivddihrcwssgdraikyrrmyktgdygrivddillyegrtdsqvkirgnrvdLSEVEAALsklsevdklsvlcykpgevdqvsevtseeirgvddillyegrtdsqvkirgnrvdLSEVEAALskisevdklsVLCYKPGEVDqiweapssagstdssfivksredraeeelv
Low Complexity Region (SEG)
MNINLTISEHHFDKVIIPAPFEREkakkkknkkkkkkkkkkkkkkkkkkkkkRRILAKSCENPAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAGSTDSSFIVKSREDRAEEELV
Disordered region (IsUnstruct)
********************************************************************TVLSLPQLRL**************************DIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIW***************************
Disordered Region (DISOPRED)
***NLTISEHHFDKVIIPAPF**********************************LAKSCENPAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAGS**SSFIVKSREDRAEEELV
Disordered Region (DISEMBL)
MNINLTISEHHFDKVIIPAPFERE*******************************LAKSCENPAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAP*********FIVK***********
Disordered Region (DISPRO)
MNINLTISEHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAGSTDSSFIVKSREDRAE*ELV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNINLTISEHHFDKVIIPAPFExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILAKSCENPAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAGSTDSSFIVKSREDRAEEELV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q9R9J0	5369	Mycosubtilin synthase sub	yes	N/A	0.185	0.010	0.568	1e-08
Q9R9J1	3971	Mycosubtilin synthase sub	no	N/A	0.172	0.013	0.574	5e-08
Q04747	3583	Surfactin synthase subuni	yes	N/A	0.182	0.015	0.491	1e-07
P45745	2378	Dimodular nonribosomal pe	no	N/A	0.195	0.025	0.460	7e-07
P27206	3587	Surfactin synthase subuni	no	N/A	0.179	0.015	0.473	1e-06
Q4WYG2	2202	Nonribosomal peptide synt	yes	N/A	0.224	0.031	0.416	1e-06
Q4WLW8	1160	Nonribosomal peptide synt	no	N/A	0.153	0.040	0.551	1e-06
O68006	5255	Bacitracin synthase 1 OS=	no	N/A	0.179	0.010	0.5	2e-06
O30408	3587	Tyrocidine synthase 2 OS=	N/A	N/A	0.201	0.017	0.396	3e-06
O68008	6359	Bacitracin synthase 3 OS=	no	N/A	0.214	0.010	0.410	3e-06

>sp|Q9R9J0|MYCB_BACIU Mycosubtilin synthase subunit B OS=Bacillus subtilis GN=mycB PE=3 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 149 IKYRRMYKTGDYGR-IVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSV 205
           I  R+MYKTGD  R + D  + Y GR D QVKIRG R++L EVEAALS L EV + +V
Sbjct: 629 IPRRKMYKTGDLARWLPDGRIEYLGRIDHQVKIRGYRIELGEVEAALSNLEEVRETTV 686

This protein is a multifunctional enzyme, able to activate and polymerize the amino acids Tyr, Asn, Gln and Pro as part of the synthesis of mycosubtilin. The Asn and Gln residues are further epimerized to the D-isomer form. The activation sites for these amino acids consist of individual domains.
Bacillus subtilis (taxid: 1423)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q9R9J1|MYCA_BACIU Mycosubtilin synthase subunit A OS=Bacillus subtilis GN=mycA PE=3 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 154  MYKTGDYG-RIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
            MYKTGD   R+ D  L+Y GR D QVKIRG+R++L EVEAA+ K+  V K  VL
Sbjct: 3312 MYKTGDLAKRLRDGNLIYLGRIDEQVKIRGHRIELGEVEAAMHKVEAVQKAVVL 3365

This protein is a multifunctional enzyme, able to activate a long chain fatty acid and link it with the amino acid Asn as part of the synthesis of mycosubtilin. The activation sites consist of individual domains.

Bacillus subtilis (taxid: 1423)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q04747|SRFAB_BACSU Surfactin synthase subunit 2 OS=Bacillus subtilis (strain 168) GN=srfAB PE=1 SV=3

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 153  RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK 209
            RMY+TGD  + V+  + Y GR D QVK+RG R++LSE+E  L++LSEV   +V   K
Sbjct: 2906 RMYRTGDLVKWVNGGIEYIGRIDQQVKVRGYRIELSEIEVQLAQLSEVQDAAVTAVK 2962

This protein is a multifunctional enzyme able to activate and polymerize the amino acids Leu, Glu, Asp and Val. Activation sites for these AA consist of individual domains.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P45745|DHBF_BACSU Dimodular nonribosomal peptide synthase OS=Bacillus subtilis (strain 168) GN=dhbF PE=1 SV=4

 Score = 55.1 bits (131), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 153  RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCY--K 209
            RMY+TGD  R+  D  L Y GR D QVKIRG R++L E+EAAL +  +++  +V+    +
Sbjct: 1906 RMYRTGDVARLRADGSLDYVGRADHQVKIRGFRIELGEIEAALVQHPQLEDAAVIVREDQ 1965

Query: 210  PGE 212
            PG+
Sbjct: 1966 PGD 1968

Specifically adenylates threonine and glycine, and loads them onto their corresponding peptidyl carrier domains.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P27206|SRFAA_BACSU Surfactin synthase subunit 1 OS=Bacillus subtilis (strain 168) GN=srfAA PE=1 SV=4

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 37/57 (64%)

Query: 153  RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK 209
            RMY+TGD  +     + Y GR D QVK+RG R++LSE+E  L++LSEV   +V   K
Sbjct: 2910 RMYRTGDLVKWTGGGIEYIGRIDQQVKVRGYRIELSEIEVQLAQLSEVQDAAVTAVK 2966

This protein is a multifunctional enzyme able to activate and polymerize the amino acids Leu, Glu, Asp and Val. Activation sites for these AA consist of individual domains.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q4WYG2|NRPS5_ASPFU Nonribosomal peptide synthetase 5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=NRPS5 PE=3 SV=2

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 154  MYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE 212
            MY+TGD GR+++D  + Y GR D+Q+K+RG R+DL EV++ +SKL+       L    G 
Sbjct: 1437 MYRTGDIGRMLEDGNIEYIGREDNQIKLRGFRIDLGEVQSTISKLASTASNVALIVSNGN 1496

Query: 213  VDQVSEVTSEEI 224
            +  V+ +T E I
Sbjct: 1497 L--VAFMTPETI 1506

Nonribosomal peptide synthesis (NRPS) is a key mechanism responsible for the biosynthesis of bioactive metabolites which are potentially contributing to organismal virulence.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4WLW8|NRP11_ASPFU Nonribosomal peptide synthetase 11 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=NRPS11 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 2/49 (4%)

Query: 151 YRRMYKTGDYGRI--VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKL 197
           Y R+Y+TGD  R    D+ L+Y GR DSQVKIRG R++L EVE AL + 
Sbjct: 473 YGRLYRTGDLVRFDAEDESLVYIGRKDSQVKIRGQRLELGEVEHALQQF 521

Nonribosomal peptide synthesis (NRPS) is a key mechanism responsible for the biosynthesis of bioactive metabolites which are potentially contributing to organismal virulence. Involved in the conversion of fumiquinazoline F (FQF) to fumiquinazoline A (FQA). After oxidation of the 2',3'-double bond of the indole side chain of FQF by AFUA_6G12060, NRPS11 activates L-Ala as the adenylate, installs it as the pantetheinyl thioester on its carrier protein domain and acylates the oxidized indole for subsequent intramolecular cyclization to create the 6-5-5 imidazolindolone of FQA.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O68006|BACA_BACLI Bacitracin synthase 1 OS=Bacillus licheniformis GN=bacA PE=3 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 154  MYKTGDYGRIVDDILL-YEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCY 208
            +YKTGDYG + +D  + + GR DSQVKIRG RV++ E+E  L    E+ K SV+ Y
Sbjct: 1446 IYKTGDYGVLKEDGYVEFLGRKDSQVKIRGYRVEMGEIENTLVSHQEITKASVIDY 1501

Activates five amino acids, incorporates two D-amino acids, releases and cyclizes the mature bacitracin.

Bacillus licheniformis (taxid: 1402)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|O30408|TYCB_BREPA Tyrocidine synthase 2 OS=Brevibacillus parabrevis GN=tycB PE=3 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 148  AIKYRRMYKTGDYGR-IVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
            A+   RMYKTGD GR + D  + + GR D Q+K+RG R+++ E+EA L    + ++  V+
Sbjct: 1871 AVPGERMYKTGDLGRWLHDGTIDFIGRVDDQIKVRGYRIEVGEIEAVLLAYDQTNEAIVV 1930

Query: 207  CYK 209
             Y+
Sbjct: 1931 AYQ 1933

Activates the second to fourth amino acids in tyrocidine (in tyrocidine A, Pro, Phe, and D-Phe) and epimerizes the last one.

Brevibacillus parabrevis (taxid: 54914)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|O68008|BACC_BACLI Bacitracin synthase 3 OS=Bacillus licheniformis GN=bacC PE=3 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 7/73 (9%)

Query: 138  IHRCWSSGDRAIKYRRMYKTGDYGR-IVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 196
            I   ++SG+R      +Y+TGD  R + D  L + GR D QVKIRG R++L E+E  L K
Sbjct: 1853 ISHPFASGER------LYRTGDLARWLPDGHLEFLGRIDHQVKIRGYRIELGEIENQLLK 1906

Query: 197  LSEVDKLSVLCYK 209
            L ++D+ +V+  K
Sbjct: 1907 LDKIDEAAVIARK 1919

Induces peptide synthesis, activates and incorporates five amino acids, forms a thiazoline ring between the first two amino acids and incoporates a D-glutamine in the fourth position.

Bacillus licheniformis (taxid: 1402)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
23957829	735	mutant e4 ebony [Drosophila melanogaster	0.475	0.198	0.362	2e-20
328702346	885	PREDICTED: bacitracin synthase 3-like [A	0.205	0.071	0.676	5e-19
71534702	860	beta-alanyl conjugating enzyme [Periplan	0.309	0.110	0.442	2e-17
91090408	876	PREDICTED: similar to AMP dependent liga	0.185	0.065	0.630	3e-17
270013381	860	hypothetical protein TcasGA2_TC011976 [T	0.211	0.075	0.630	3e-17
224459184	298	ebony [Tribolium castaneum]	0.211	0.218	0.630	6e-17
307202981	870	Tyrocidine synthetase 3 [Harpegnathos sa	0.214	0.075	0.606	9e-17
110749393	860	PREDICTED: tyrocidine synthase 3 [Apis m	0.218	0.077	0.567	1e-16
342305262	879	ebony [Drosophila melanogaster] gi|34230	0.185	0.064	0.641	2e-16
126789024	879	ebony [Drosophila melanogaster]	0.185	0.064	0.641	2e-16

>gi|23957829|gb|AAG28774.3| mutant e4 ebony [Drosophila melanogaster]

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 101/204 (49%), Gaps = 58/204 (28%)

Query: 65  YKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYR- 123
           ++G   LS  +L   S  L+ +N+  E ML   N++      AIVLYTSGSTG+PK  R 
Sbjct: 149 FQGTPTLSTTELYAKSLQLAGSNLLSEEMLRGGNDHT-----AIVLYTSGSTGVPKGVRL 203

Query: 124 --------------------------------------RMYKTGDYGRIVD---DIHRCW 142
                                                 R  K G+ G I     ++   +
Sbjct: 204 PHESILQEAYKKQLSLYDNVPIGIPLSNTVVYLLDADYRPVKNGEIGEIFASGLNLAAGY 263

Query: 143 SSG---DRAI--------KYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVE 191
            +G   +R +        KY R+Y+TGDYG + +  ++YEGRTDSQVKIRG+RVDLSEVE
Sbjct: 264 VNGRDPERFLENPLAVEKKYARLYRTGDYGSLKNGSIMYEGRTDSQVKIRGHRVDLSEVE 323

Query: 192 AALSKLSEVDKLSVLCYKPGEVDQ 215
             +++L  VDK  VLCY  G+VDQ
Sbjct: 324 KNVAELPLVDKAIVLCYHAGQVDQ 347

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702346|ref|XP_001949322.2| PREDICTED: bacitracin synthase 3-like [Acyrthosiphon pisum]

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 58/65 (89%), Gaps = 2/65 (3%)

Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSE--VDKLSVLCYKP 210
           RMY+TGDYG+IV+ +LLYEGRTDSQ+K+RG+RVDL+EVE A+ +L +  +DKL+VLCYKP
Sbjct: 438 RMYQTGDYGKIVNGVLLYEGRTDSQIKVRGHRVDLTEVETAIHQLQDAGIDKLAVLCYKP 497

Query: 211 GEVDQ 215
           GE +Q
Sbjct: 498 GETEQ 502

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|71534702|emb|CAI26307.1| beta-alanyl conjugating enzyme [Periplaneta americana]

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 27/122 (22%)

Query: 150 KYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK 209
           ++ R+Y+TGD+ R V   L+YEGRTDSQVKIRG+RVDL+EVE A++ L  VDK  VLCYK
Sbjct: 413 EHSRLYRTGDFARFVKGTLVYEGRTDSQVKIRGHRVDLAEVERAVAGLPGVDKCVVLCYK 472

Query: 210 PGEVDQV----------SEVTSEEIRG----------------VDDI-LLYEGRTDSQVK 242
           PGE++Q           S ++S+++                  VD I LL  G+TD Q  
Sbjct: 473 PGELEQALLAYVTTCKDSSMSSQQLEAVLHKNLAAYMLPQVFVVDSIPLLVNGKTDRQAL 532

Query: 243 IR 244
           +R
Sbjct: 533 LR 534

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090408|ref|XP_970748.1| PREDICTED: similar to AMP dependent ligase [Tribolium castaneum]

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 56/65 (86%)

Query: 151 YRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKP 210
           + ++Y+TGD+ R+ +D+LLYEGRTDSQVKIRG+RVDLSEVE A+S +  V+K  VLCY+P
Sbjct: 431 FSKLYRTGDFARLQNDVLLYEGRTDSQVKIRGHRVDLSEVEKAVSGVEGVEKAVVLCYQP 490

Query: 211 GEVDQ 215
           GE++Q
Sbjct: 491 GEMNQ 495

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013381|gb|EFA09829.1| hypothetical protein TcasGA2_TC011976 [Tribolium castaneum]

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 56/65 (86%)

Query: 151 YRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKP 210
           + ++Y+TGD+ R+ +D+LLYEGRTDSQVKIRG+RVDLSEVE A+S +  V+K  VLCY+P
Sbjct: 415 FSKLYRTGDFARLQNDVLLYEGRTDSQVKIRGHRVDLSEVEKAVSGVEGVEKAVVLCYQP 474

Query: 211 GEVDQ 215
           GE++Q
Sbjct: 475 GEMNQ 479

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224459184|gb|ACN43327.1| ebony [Tribolium castaneum]

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 56/65 (86%)

Query: 151 YRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKP 210
           + ++Y+TGD+ R+ +D+LLYEGRTDSQVKIRG+RVDLSEVE A+S +  V+K  VLCY+P
Sbjct: 202 FSKLYRTGDFARLQNDVLLYEGRTDSQVKIRGHRVDLSEVEKAVSGVEGVEKAVVLCYQP 261

Query: 211 GEVDQ 215
           GE++Q
Sbjct: 262 GEMNQ 266

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202981|gb|EFN82197.1| Tyrocidine synthetase 3 [Harpegnathos saltator]

 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 55/66 (83%)

Query: 150 KYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK 209
           +Y R+++TGDY RIV   ++YEGR DSQ+KIRG+RVDL+EVE A++++  VDK+ VLCYK
Sbjct: 419 EYPRIFRTGDYARIVKGYVIYEGRVDSQIKIRGHRVDLTEVERAIARIPGVDKVVVLCYK 478

Query: 210 PGEVDQ 215
           PGE+ Q
Sbjct: 479 PGELSQ 484

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110749393|ref|XP_392634.3| PREDICTED: tyrocidine synthase 3 [Apis mellifera]

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 55/67 (82%)

Query: 149 IKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCY 208
           ++Y R+Y TGDY +I   +++YEGR DSQ+K+RG+RVDL+EVE  +S++SE+D + VLCY
Sbjct: 412 LEYSRIYCTGDYAKISKGVIMYEGRVDSQIKVRGHRVDLTEVEKVISRISEIDGVIVLCY 471

Query: 209 KPGEVDQ 215
           KPGE+ Q
Sbjct: 472 KPGELSQ 478

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|342305262|dbj|BAK55684.1| ebony [Drosophila melanogaster] gi|342305264|dbj|BAK55685.1| ebony [Drosophila melanogaster] gi|342305272|dbj|BAK55689.1| ebony [Drosophila melanogaster]

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 54/67 (80%)

Query: 150 KYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK 209
           KY R+Y+TGDYG + +  ++YEGRTDSQVKIRG+RVDLSEVE  +++L  VDK  VLCY 
Sbjct: 426 KYARLYRTGDYGSLKNGSIMYEGRTDSQVKIRGHRVDLSEVEKNVAELPLVDKAIVLCYH 485

Query: 210 PGEVDQV 216
            G+VDQV
Sbjct: 486 AGQVDQV 492

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|126789024|gb|ABO27272.1| ebony [Drosophila melanogaster]

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 54/67 (80%)

Query: 150 KYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK 209
           KY R+Y+TGDYG + +  ++YEGRTDSQVKIRG+RVDLSEVE  +++L  VDK  VLCY 
Sbjct: 426 KYARLYRTGDYGSLKNGSIMYEGRTDSQVKIRGHRVDLSEVEKNVAELPLVDKAIVLCYH 485

Query: 210 PGEVDQV 216
            G+VDQV
Sbjct: 486 AGQVDQV 492

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
FB|FBgn0000527	879	e "ebony" [Drosophila melanoga	0.214	0.075	0.636	1e-24
UNIPROTKB|Q4KET0	4367	ofaB "Non-ribosomal peptide sy	0.231	0.016	0.432	8.2e-09
UNIPROTKB|Q0VZ70	3912	cmdD "Chondramide synthase cmd	0.208	0.016	0.393	2.7e-10
UNIPROTKB|Q4KES9	4901	ofaC "Non-ribosomal peptide sy	0.224	0.014	0.416	1.2e-06
ASPGD|ASPL0000061128	5935	AN0016 [Emericella nidulans (t	0.231	0.011	0.412	3.2e-09
UNIPROTKB|Q81QP7	2385	dhbF "Nonribosomal peptide syn	0.247	0.031	0.392	2.5e-06
TIGR_CMR|BA_2372	2385	BA_2372 "nonribosomal peptide	0.247	0.031	0.392	2.5e-06
UNIPROTKB|Q48KC2	2151	PSPPH_1925 "Pyoverdine sidecha	0.175	0.025	0.454	5.3e-05
UNIPROTKB|Q48KD6	4336	PSPPH_1911 "Pyoverdine chromop	0.175	0.012	0.472	0.00077
UNIPROTKB|Q48KC1	2875	PSPPH_1926 "Pyoverdine sidecha	0.335	0.035	0.376	1.2e-08

FB|FBgn0000527 e "ebony" [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
 Identities = 42/66 (63%), Positives = 53/66 (80%)

Query:   150 KYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK 209
             KY R+Y+TGDYG + +  ++YEGRTDSQVKIRG+RVDLSEVE  +++L  VDK  VLCY 
Sbjct:   426 KYARLYRTGDYGSLKNGSIMYEGRTDSQVKIRGHRVDLSEVEKNVAELPLVDKAIVLCYH 485

Query:   210 PGEVDQ 215
              G+VDQ
Sbjct:   486 AGQVDQ 491

GO:0007593 "chitin-based cuticle sclerotization" evidence=IMP

GO:0003833 "beta-alanyl-dopamine synthase activity" evidence=IDA;IMP;TAS

GO:0045475 "locomotor rhythm" evidence=NAS

GO:0007623 "circadian rhythm" evidence=NAS

GO:0048067 "cuticle pigmentation" evidence=IGI;IMP

GO:0048022 "negative regulation of melanin biosynthetic process" evidence=IMP

GO:0042440 "pigment metabolic process" evidence=TAS

GO:0001692 "histamine metabolic process" evidence=IMP

GO:0048066 "developmental pigmentation" evidence=TAS

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=TAS

GO:0042417 "dopamine metabolic process" evidence=IDA

GO:0043042 "amino acid adenylylation by nonribosomal peptide synthase" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IGI;IMP

UNIPROTKB|Q4KET0 ofaB "Non-ribosomal peptide synthetase OfaB" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 141 (54.7 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
 Identities = 32/74 (43%), Positives = 47/74 (63%)

Query:   153 RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK-- 209
             R+Y+TGD GR   D  + Y GR D QVKIRG R++L E++A L++L EV +  VL  +  
Sbjct:  4156 RLYRTGDLGRYQADGTIEYLGRNDDQVKIRGLRIELGEIQARLTQLEEVKEAVVLAREDV 4215

Query:   210 PGEVDQVSEVTSEE 223
             PG+   V+  T+ +
Sbjct:  4216 PGDQRLVAYYTTHD 4229

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=IDA

UNIPROTKB|Q0VZ70 cmdD "Chondramide synthase cmdD" [Chondromyces crocatus (taxid:52)]

 Score = 120 (47.3 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
 Identities = 26/66 (39%), Positives = 42/66 (63%)

Query:   153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPG 211
             R+Y+TGD  R + D  L++ GR D+QVK+RG R++L E+E+AL     V   +V+ ++  
Sbjct:   858 RIYRTGDLARYLPDGNLVFLGRVDNQVKLRGLRIELEEIESALKSHPHVGDAAVIVHE-A 916

Query:   212 EVDQVS 217
               DQ +
Sbjct:   917 PADQAT 922

GO:0009403 "toxin biosynthetic process" evidence=IDA

GO:0043042 "amino acid adenylylation by nonribosomal peptide synthase" evidence=IDA

UNIPROTKB|Q4KES9 ofaC "Non-ribosomal peptide synthetase OfaC" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 129 (50.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 30/72 (41%), Positives = 45/72 (62%)

Query:   153 RMYKTGDYGR-IVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK-- 209
             R+Y+TGD  R + D  + Y GR D QVKIRG R++L E++A L++L  V +  VL  +  
Sbjct:  3031 RLYRTGDLARYLADGTIEYLGRNDDQVKIRGLRIELGEIQARLTQLEGVKEAVVLAREDV 3090

Query:   210 PGEVDQVSEVTS 221
             PG+   V+  T+
Sbjct:  3091 PGDQRLVAYYTT 3102

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=IDA

ASPGD|ASPL0000061128 AN0016 [Emericella nidulans (taxid:162425)]

 Score = 117 (46.2 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
 Identities = 33/80 (41%), Positives = 45/80 (56%)

Query:   152 RRMYKTGDYGRIVDDI--LLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLC-- 207
             RR YKTGD  R   D+  L Y GR D+Q+K+ G RV+L E+E  L+   E+ K  V+   
Sbjct:   623 RRFYKTGDLVRYNSDLGSLTYIGRKDTQIKLHGQRVELGEIEGCLNA-DELVKHCVVFLP 681

Query:   208 ---YKPGEVDQVSEV-TSEE 223
                Y  G++  V  + TSEE
Sbjct:   682 KEGYAAGKLTAVLSIKTSEE 701

GO:0019748 "secondary metabolic process" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=IEA

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0035690 "cellular response to drug" evidence=IEA

GO:1900772 "fumitremorgin B biosynthetic process" evidence=IEA

GO:0031505 "fungal-type cell wall organization" evidence=IEA

GO:1900805 "brevianamide F biosynthetic process" evidence=IEA

GO:1900809 "fumigaclavine C biosynthetic process" evidence=IEA

GO:0009405 "pathogenesis" evidence=IEA

GO:0009847 "spore germination" evidence=IEA

UNIPROTKB|Q81QP7 dhbF "Nonribosomal peptide synthetase DhbF" [Bacillus anthracis (taxid:1392)]

 Score = 132 (51.5 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
 Identities = 31/79 (39%), Positives = 48/79 (60%)

Query:   153 RMYKTGDYGRIVDDILL-YEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK-- 209
             RMY+TGD  R   D  L Y GR D Q+KIRG R++L E+EA + K  +V++++V+  +  
Sbjct:  1908 RMYRTGDLARWRHDGTLDYIGRADHQIKIRGFRIELGEIEAVIMKHPKVEQVAVIVREDQ 1967

Query:   210 PGEVDQVSEVTSEEIRGVD 228
             PG+   VS + +     +D
Sbjct:  1968 PGDKRLVSYIVASNNEMID 1986

GO:0003824 "catalytic activity" evidence=ISS

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=ISS

GO:0019290 "siderophore biosynthetic process" evidence=ISS

TIGR_CMR|BA_2372 BA_2372 "nonribosomal peptide synthetase DhbF" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 132 (51.5 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
 Identities = 31/79 (39%), Positives = 48/79 (60%)

Query:   153 RMYKTGDYGRIVDDILL-YEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK-- 209
             RMY+TGD  R   D  L Y GR D Q+KIRG R++L E+EA + K  +V++++V+  +  
Sbjct:  1908 RMYRTGDLARWRHDGTLDYIGRADHQIKIRGFRIELGEIEAVIMKHPKVEQVAVIVREDQ 1967

Query:   210 PGEVDQVSEVTSEEIRGVD 228
             PG+   VS + +     +D
Sbjct:  1968 PGDKRLVSYIVASNNEMID 1986

GO:0003824 "catalytic activity" evidence=ISS

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=ISS

GO:0019290 "siderophore biosynthetic process" evidence=ISS

UNIPROTKB|Q48KC2 PSPPH_1925 "Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 121 (47.7 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query:   153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
             R+Y+TGD  R  D+ ++ Y GR D QVKIRG R++L E+EA+L +   V +  V+
Sbjct:  1924 RLYRTGDLARYRDEGVIEYAGRIDHQVKIRGLRIELGEIEASLLEHGSVQEAVVI 1978

GO:0003824 "catalytic activity" evidence=ISS

GO:0019290 "siderophore biosynthetic process" evidence=ISS

UNIPROTKB|Q48KD6 PSPPH_1911 "Pyoverdine chromophore synthetase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 116 (45.9 bits), Expect = 0.00077, Sum P(3) = 0.00077
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query:   153 RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
             R+Y+TGD  R   D +L Y GR D QVKIRG R++L E+E  L + S + +  VL
Sbjct:  4105 RLYRTGDLARRRKDGVLEYVGRVDHQVKIRGYRIELGEIETRLLEHSAIRETVVL 4159

GO:0019290 "siderophore biosynthetic process" evidence=ISS

UNIPROTKB|Q48KC1 PSPPH_1926 "Pyoverdine sidechain peptide synthetase IV, D-Asp-L-Ser component" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 127 (49.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 44/117 (37%), Positives = 58/117 (49%)

Query:   100 NEQSNDIAIVLYTSGSTGIPKEYR-RMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTG 158
             N  +  +A  LY  G  G+ + Y  R   T +  R V D H   + G      +R+Y+ G
Sbjct:   827 NPVAERVAGELYLGGQ-GLAQGYLGRAAMTAE--RFVPDPH---AEG------QRLYRAG 874

Query:   159 DYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ 215
             D  R VD +L Y GR D QVKIRG RV+  EV   L  L  V +  VL  +P E D+
Sbjct:   875 DRARWVDGVLEYLGRADDQVKIRGYRVEPGEVGQLLQTLENVAEAVVLA-QPLESDE 930

GO:0003824 "catalytic activity" evidence=ISS

GO:0019290 "siderophore biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	307
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-17
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	6e-16
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	7e-15
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-14
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	3e-14
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	4e-14
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	8e-14
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	7e-13
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	9e-12
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-11
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	4e-11
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	5e-11
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	4e-10
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	5e-10
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	8e-10
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-09
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-09
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	3e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-09
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	7e-09
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	8e-09
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-08
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-08
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	9e-08
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-07
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-07
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	3e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-07
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-06
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	4e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	4e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	5e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	5e-06
TIGR03443	1389	TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh	6e-06
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	1e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-05
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	2e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	3e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	7e-05
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-04
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	1e-04
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	2e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	3e-04
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	3e-04
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	4e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	4e-04
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	4e-04
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	5e-04
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	6e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	6e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	7e-04
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	7e-04
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	7e-04
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	7e-04
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-04
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	7e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	8e-04
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	0.001
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.001
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.001
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	0.001
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	0.001
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	0.001
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.002
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.002
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.002
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	0.002
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.002
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.002
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.002
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.002
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	0.002
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	0.003
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.003
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	0.003
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	0.003
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.004
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	0.004
pfam11208	132	pfam11208, DUF2992, Protein of unknown function (D	0.004

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 81.7 bits (203), Expect = 2e-17
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 11/84 (13%)

Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPG 211
           R+Y+TGD  R + D  L + GR D QVKIRG R++L E+EAAL     V +  V+  + G
Sbjct: 327 RLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELGEIEAALLAHPGVREAVVVAREDG 386

Query: 212 EVDQV----------SEVTSEEIR 225
             ++           +E+ + E+R
Sbjct: 387 AGEKRLVAYVVPAAGAELDAAELR 410

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 77.3 bits (191), Expect = 6e-16
 Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 152 RRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVD 201
            R+Y+TGD  R + D  L + GR D QVKIRG R++L E+EAAL +   V 
Sbjct: 355 ARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVR 405

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 74.1 bits (183), Expect = 7e-15
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 152 RRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKP 210
            R+Y+TGD  R   D  + + GR D QVKIRG R++L E+E AL +   V + +VL  + 
Sbjct: 357 ERLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVLVRED 416

Query: 211 GEVDQ--------VSEVTSEEIRG 226
              D+           + + E+R 
Sbjct: 417 AAGDKRLVAYVVARGALDAAELRA 440

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 152 RRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSV 205
            R+Y+TGD  R   D  L + GR D QVKIRG R++L E+EA L  L  V   +V
Sbjct: 322 GRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAV 376

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 152 RRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
            R+Y+TGD GR   D  + + GR D QVKIRG RV+L E+EAAL++   V +  V+
Sbjct: 358 ERLYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEAALARHPGVQRAVVV 413

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 72.2 bits (178), Expect = 4e-14
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 152 RRMYKTGDYGRIVDDILL-YEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLC-YK 209
           +R Y+TGD   + DD LL Y GR D Q+K+ G R++L E+EAAL  L  V++  VL   K
Sbjct: 329 QRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPK 388

Query: 210 PGEVDQ-VSEVTSEEIRGVDDILL 232
             +V + V+ V  +E       L 
Sbjct: 389 GEKVVRLVAFVVGKEGALDTKALK 412

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 71.1 bits (175), Expect = 8e-14
 Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 153 RMYKTGDYGR-IVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV-DKLSVLC-YK 209
           R+Y+TGD  R   D  L Y GR D QVKIRG R++L E+EAAL     V D + V+    
Sbjct: 320 RLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGVADAVVVVREEG 379

Query: 210 PGEVDQVSEVTSEEIRGVD 228
           PG+   V+ V  +     D
Sbjct: 380 PGDQRLVAYVVPKAGAAPD 398

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 152 RRMYKTGDYGRIVDDILL-YEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDK 202
            R+Y+TGD  R   D  L Y GR D QVK+RG R++L E+EAAL  +  V +
Sbjct: 330 ERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAALRSIPGVAE 381

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 65.4 bits (159), Expect = 9e-12
 Identities = 26/47 (55%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 152 RRMYKTGDYGRIVDDILL-YEGRTDSQVKIRGNRVDLSEVEAALSKL 197
            R+Y+TGD  R + D  L Y GR DSQVKIRG R++L E+EAAL++ 
Sbjct: 595 LRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQ 641

Length = 642

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 153 RMYKTGDYGR-IVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
           R+Y+TGD  R   D ++ Y GR D QVKIRG R++L E+EA L     V +  VL
Sbjct: 890 RLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVL 944

Length = 3956

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVD 201
           RMY+TGD  R +DD  + Y GR+D Q+KIRG R++L E++ A+  L +V+
Sbjct: 837 RMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVE 886

Length = 1296

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 155 YKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
           Y+TGD GR  +D  L   GR D QVKIRG R++  E+EA L +   V
Sbjct: 361 YRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGV 407

Length = 412

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 59.8 bits (146), Expect = 4e-10
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQ 278
           D  L + GR D QVKIRG R++L E+EAAL     V +  V+  + G  ++
Sbjct: 340 DGNLEFLGRADDQVKIRGYRIELGEIEAALLAHPGVREAVVVAREDGAGEK 390

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKP-G 211
             Y TGD G + D +L Y+GR D Q+K+ G R++L E+E  L + S V+   V+ Y    
Sbjct: 376 PAYHTGDAGYLEDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDH 435

Query: 212 EVDQ 215
           +V  
Sbjct: 436 KVQY 439

Length = 503

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 59.0 bits (143), Expect = 8e-10
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
             Y+TGD G I D  L Y+GR D Q+K+ G R++L ++E  L + S ++   V+
Sbjct: 374 PAYRTGDAGTITDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVV 427

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 153  RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
            R+Y+TGD  R   D +L Y GR D QVKIRG R++L E+EA L + +EV + +V 
Sbjct: 4102 RLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVA 4156

Length = 4334

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 231 LLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVD 264
           L + GR D QVKIRG R++L E+EAAL +   V 
Sbjct: 372 LEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVR 405

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLC-YKPGEVDQI 279
           D +L+Y GR D Q+K+ G R++L E+EAAL  +  V++  VL   K  +V ++
Sbjct: 343 DGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRL 395

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 153 RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
           RMY+TGD  R   D ++ Y GR D QVK+RG R++L E+EA L +   V + +VL
Sbjct: 886 RMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVL 940

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 153  RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
            R+Y+TGD  R   D ++ Y GR D QVKIRG R++L E+EA L +   V +  VL
Sbjct: 3471 RLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVL 3525

Length = 3956

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 153  RMYKTGDYGRIVDDILL-YEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
            R+Y+TGD  R+  D L+ Y GR D QVKIRG R++L E+E+ L +   V +  VL
Sbjct: 2568 RLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVL 2622

Length = 4334

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQ 278
           D  + + GR D QVKIRG R++L E+E AL +   V + +VL  +    D+
Sbjct: 371 DGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDK 421

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQ-----IWEA 282
           D  L Y GR D QVKIRG R++L E+EAAL     V    V+  + G  DQ     +   
Sbjct: 333 DGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPK 392

Query: 283 PSSAGSTDS 291
             +A   ++
Sbjct: 393 AGAAPDAEA 401

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 153  RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
            R+Y+TGD  R   D ++ Y GR D QVKIRG R++L E+EA L     V +  V+
Sbjct: 2381 RLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVV 2435

Length = 5163

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSV 268
           D  L + GR D QVKIRG R++L E+EA L  +  V   +V
Sbjct: 336 DGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAV 376

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 153  RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
            R+Y+TGD  R   D ++ Y GR D QVKIRG R++L E+EA L +   V +  V+
Sbjct: 1954 RLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVI 2008

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 153  RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAAL 194
            R+Y+TGD  R   D ++ Y GR D QVKIRG R++L E+EA L
Sbjct: 4929 RLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARL 4971

Length = 5163

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 235 GRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVL 269
           GR D QVKIRG RV+L E+EAAL++   V +  V+
Sbjct: 379 GRADHQVKIRGYRVELGEIEAALARHPGVQRAVVV 413

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 153  RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK 209
            R+Y+TGD  R   D  L Y GR D QVK+RG RV+  E++A L     V + +VL  +
Sbjct: 1505 RLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVRE 1562

Length = 4334

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 20/38 (52%), Positives = 25/38 (65%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDK 265
           D  L Y GR D QVK+RG R++L E+EAAL  I  V +
Sbjct: 344 DGQLEYLGRIDDQVKVRGFRIELGEIEAALRSIPGVAE 381

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 153  RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
            R+Y+TGD  R   D ++ Y GR D QVKIRG R++L E+EA L +   V +  VL
Sbjct: 3424 RLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVL 3478

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 227 VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQI 279
            D ++ Y GR D QVKIRG R++L E+EA L     V + +V+  +PG+    
Sbjct: 902 ADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVRE-AVVLAQPGDAGLQ 953

Length = 3956

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 21/36 (58%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
           D  L   GR D QVKIRG R++  E+EA L +   V
Sbjct: 372 DGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGV 407

Length = 412

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 22/45 (48%), Positives = 30/45 (66%)

Query: 225  RGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVL 269
            R  D +L Y GR D QVKIRG R++L E+EA L + +EV + +V 
Sbjct: 4112 RRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVA 4156

Length = 4334

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI 260
           D  L Y GR DSQVKIRG R++L E+EAAL++ 
Sbjct: 609 DGALEYLGRKDSQVKIRGFRIELGEIEAALAEQ 641

Length = 642

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 19  APFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
           AP E++  K  K    K+ +KK+K+K+K K KK+ R
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHR 417

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 20  PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
           P ++  AK+ + K+K+K+K K KK+ +  K   +R
Sbjct: 391 PSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 18  PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCE 61
           P+     K  +KK K+K+K K KK+ +  K   K+R+    S E
Sbjct: 391 PSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434

Length = 434

>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 153 RMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 196
           R+Y+TGD GR + D  +   GR D QVKIRG R++L E++  LS+
Sbjct: 678 RLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQ 722

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 14/32 (43%), Positives = 24/32 (75%)

Query: 233 YEGRTDSQVKIRGNRVDLSEVEAALSKISEVD 264
           Y GR+D Q+KIRG R++L E++ A+  + +V+
Sbjct: 855 YLGRSDDQLKIRGQRIELGEIDRAMQALPDVE 886

Length = 1296

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP-GEVDQI 279
           D +L Y+GR D Q+K+ G R++L E+E  L + S V+   V+ Y    +V  +
Sbjct: 388 DGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYL 440

Length = 503

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 13/80 (16%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVL--CYKPGEVDQIWEAPSS 285
           D  L Y+GR D Q+K+ G R++L ++E  L + S ++   V+    K  +V+ +      
Sbjct: 386 DGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYL------ 439

Query: 286 AGSTDSSFIVKSREDRAEEE 305
                 + IV   ED  +E 
Sbjct: 440 -----IAAIVPETEDFEKEF 454

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 14  KVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
           K   P P ++++ +KK  K+KKKKK+KKK KK+KKK +K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 227  VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVL 269
             D ++ Y GR D QVKIRG R++L E+EA L     V +  V+
Sbjct: 2393 ADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVV 2435

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 226 GVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVL 269
             D ++ Y GR D QVK+RG R++L E+EA L +   V + +VL
Sbjct: 897 RADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVL 940

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 225  RGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL 257
               D ++ Y GR D QVKIRG R++L E+EA L
Sbjct: 4939 YRADGVIDYLGRVDHQVKIRGFRIELGEIEARL 4971

Length = 5163

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 18/30 (60%), Positives = 25/30 (83%)

Query: 25  KAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
           K K+++ K +K+KKKKK+KKK KK+KKK R
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413

Length = 414

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 228  DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVL 269
            D ++ Y GR D QVKIRG R++L E+EA L +   V +  V+
Sbjct: 1967 DGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVI 2008

Length = 3956

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 228  DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVL 269
            D ++ Y GR D QVKIRG R++L E+EA L +   V +  VL
Sbjct: 3484 DGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVL 3525

Length = 3956

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 220  TSEEIRGVDDILL-YEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVL 269
            T + +R   D L+ Y GR D QVKIRG R++L E+E+ L +   V +  VL
Sbjct: 2572 TGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVL 2622

Length = 4334

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 155 YKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVD 201
           Y+TGD G + ++  LY  GR+   +K+ G  V  +EVE+ L +   V 
Sbjct: 226 YRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVA 273

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 23/29 (79%), Positives = 24/29 (82%)

Query: 24  EKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
           EKAK+KK KKKKKKKKKKK  KK  KKKK
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135

Length = 135

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 155 YKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
             TGD  R+ ++  LY  GR D  +K RG RV  +E+E  +     V + +V+
Sbjct: 233 LYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVI 285

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 18  PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
           P+  +  K  KK   K+ +KK+K+K+K K KK+ +
Sbjct: 383 PSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHR 417

Length = 434

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 17/30 (56%), Positives = 25/30 (83%)

Query: 25  KAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
           K  KKK ++KK +K+KKKKK+KKK KK+++
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKK 410

Length = 414

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 20  PFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
           P  +  ++KK  K  KK   K+ +KK+K+K+K +
Sbjct: 378 PKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPK 411

Length = 434

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 27  KKKKNKKKKKKKKKKKKKKKKKKKKKR 53
           KK K KK +  K++KKKKK+KKKKKKR
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKR 168

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 102 QSNDIAIVLYTSGSTGIPK 120
             +D+A V+YTSGSTG PK
Sbjct: 91  DPDDLAYVIYTSGSTGRPK 109

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 19/29 (65%), Positives = 22/29 (75%)

Query: 25  KAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
           K K K+ K+KKKKKKKKKKK  KK  KK+
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134

Length = 135

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 68  RTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPK 120
           RT   L  LR+L+     +  P ++ LH      + +D A++L TSGSTG+PK
Sbjct: 136 RTRAGLEALRVLAIEELRSAPP-DAPLHP----ARPDDPALLLLTSGSTGVPK 183

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 103 SNDIAIVLYTSGSTGIPK 120
           ++D   +LYTSG+TG PK
Sbjct: 170 ADDPLFLLYTSGTTGKPK 187

Length = 528

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 102 QSNDIAIVLYTSGSTGIPK 120
             +D+A ++YTSG+TG PK
Sbjct: 129 DPDDLAYIIYTSGTTGKPK 147

Length = 412

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 227  VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYK 272
             D  L Y GR D QVK+RG RV+  E++A L     V + +VL  +
Sbjct: 1517 ADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVRE 1562

Length = 4334

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 14  KVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKK 51
           KV+     ++EK K+K   KK+ +  K   K++K    
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431

Length = 434

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 18/33 (54%), Positives = 26/33 (78%), Gaps = 1/33 (3%)

Query: 23  REK-AKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
           +EK  K  K K+++KK +K+KKKKK+KKK K+R
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKR 408

Length = 414

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 21  FEREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
            E++  KKK    K++KKKKK+KKKKKK+ 
Sbjct: 140 HEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 24  EKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
           EK  KKK  +  K++KKKKK+KKKKKK+  
Sbjct: 141 EKKHKKKKHEDDKERKKKKKEKKKKKKRHS 170

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 17/27 (62%), Positives = 22/27 (81%)

Query: 28  KKKNKKKKKKKKKKKKKKKKKKKKKRR 54
           KK  KKK +  K++KKKKK+KKKKK+R
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKR 168

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 142 WSSGDRAIKY--RRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLS 198
           W+  +R  +    R Y+TGD+    +D      GR+D  +K+ G R+   E+E+ L    
Sbjct: 383 WNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHP 442

Query: 199 EV 200
            V
Sbjct: 443 AV 444

Length = 528

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
          KA +K  KK +K K K +KKK KK++ K R+
Sbjct: 69 KAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 18/28 (64%), Positives = 22/28 (78%)

Query: 25  KAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
           +  K+K K+KK+KKKKKKKKKKK  KK 
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKKA 130

Length = 135

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 12/18 (66%), Positives = 15/18 (83%)

Query: 103 SNDIAIVLYTSGSTGIPK 120
            +D+A V+YTSGSTG PK
Sbjct: 119 PDDLAYVIYTSGSTGRPK 136

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 228  DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVL 269
            D ++ Y GR D QVKIRG R++L E+EA L +   V +  VL
Sbjct: 3437 DGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVL 3478

Length = 5163

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/29 (68%), Positives = 22/29 (75%)

Query: 22  EREKAKKKKNKKKKKKKKKKKKKKKKKKK 50
           E+ K KK+K KKKKKKKKK  KK  KKKK
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135

Length = 135

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 27  KKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
           K KK K +  K++KKKKK+KKKKKK+   
Sbjct: 143 KHKKKKHEDDKERKKKKKEKKKKKKRHSP 171

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 18  PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
           P+  E  K  +KK+KKKK +  K++KKKKK+KKKK++
Sbjct: 131 PSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 146 DRAIKYRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVD 201
             A       +TGD G + +D  LY  GR    +   G  +   E+EA L++   V 
Sbjct: 394 AEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVA 450

Length = 534

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 25  KAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAK 58
              +KK  K  KK   K+ +KK+K+K+K ++  +
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKR 415

Length = 434

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 23  REKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
           +   +K K KK+KKKKKKKKKKK  KK  K++
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134

Length = 135

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 23  REKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
           ++  K+K  +KK+KKKKKKKKKKK  KK  
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAA 131

Length = 135

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 18  PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENP 63
             P + E  K  + K KKKK +  K++KKKKK+KK++    S E+P
Sbjct: 129 ETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
          +K  K   K +KK +K K K +KKK KK+  
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEP 95

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 23 REKAKKKKNKKKKKKKKKKKKKKKKKKK 50
           EKA+KK  K K K +KKK KK++ K +
Sbjct: 71 WEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 24 EKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
          +K  K  +K +KKK+K++ K  K K K +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPR 91

Length = 330

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 22  EREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
           + EK  KK+ K++KKK+KKKKKKK KK  KK
Sbjct: 79  DEEKTAKKRAKRQKKKQKKKKKKKAKKGNKK 109

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 95  HADNNNEQSNDIAIVLYTSGSTGIPK 120
             D +    NDIA+++YTSGSTG+PK
Sbjct: 241 PVDPDLPSPNDIAVIMYTSGSTGLPK 266

Length = 696

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 102 QSNDIAIVLYTSGSTGIPK 120
             +D A V+YTSGSTG PK
Sbjct: 97  SPDDPAYVIYTSGSTGKPK 115

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 22 EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
          E +  +K + K +K K K +KKK KK++ K R
Sbjct: 67 ELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 16/46 (34%), Positives = 30/46 (65%)

Query: 14  KVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKS 59
           K+      +REK +K+  K++K+ +K KK+++KKKK+ ++   AK 
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591

Length = 651

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 12/18 (66%), Positives = 14/18 (77%)

Query: 103 SNDIAIVLYTSGSTGIPK 120
            +DIA + YTSGSTG PK
Sbjct: 147 PDDIAFLQYTSGSTGAPK 164

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 25 KAKKKKNKKKKKKKKKKKKKKKKKKKKKR 53
          K + K   K +KKK+K++ K  K K K R
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPR 91

Length = 330

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 8/57 (14%), Positives = 26/57 (45%)

Query: 22  EREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCENPAYKGRTVLSLPQLRL 78
            + +A++ + + KK++   +K+K  ++++K +    +    P  +       P   +
Sbjct: 108 AKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164

Length = 213

>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992)

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 15/34 (44%), Positives = 27/34 (79%)

Query: 21  FEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRR 54
            ER K +KKK  K+KK+++K++K++ K++KKK +
Sbjct: 95  HERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAK 128

This bacterial family of proteins has no known function. However, the cis-regulatory yjdF motif, just upstream from the gene encoding the proteins for this family, is a small non-coding RNA, Rfam:RF01764. The yjdF motif is found in many Firmicutes, including Bacillus subtilis. In most cases, it resides in potential 5' UTRs of homologues of the yjdF gene whose function is unknown. However, in Streptococcus thermophilus, a yjdF RNA motif is associated with an operon whose protein products synthesise nicotinamide adenine dinucleotide (NAD+). Also, the S. thermophilus yjdF RNA lacks typical yjdF motif consensus features downstream of and including the P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the S. thermophilus RNAs might sense a distinct compound that structurally resembles the ligand bound by other yjdF RNAs. On the ohter hand, perhaps these RNAs have an alternative solution forming a similar binding site, as is observed with some SAM riboswitches. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
KOG1176|consensus	537		99.92
KOG1256|consensus	691		99.91
KOG1177|consensus	596		99.88
KOG1180|consensus	678		99.86
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.82
PLN02614	666	long-chain acyl-CoA synthetase	99.79
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.78
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.77
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.77
PRK07529	632	AMP-binding domain protein; Validated	99.76
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.76
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.76
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.76
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.75
PTZ00342	746	acyl-CoA synthetase; Provisional	99.75
PRK07788	549	acyl-CoA synthetase; Validated	99.75
PRK09274	552	peptide synthase; Provisional	99.75
PRK00174	637	acetyl-CoA synthetase; Provisional	99.74
PRK06060	705	acyl-CoA synthetase; Validated	99.74
PLN02654	666	acetate-CoA ligase	99.74
PLN02574	560	4-coumarate--CoA ligase-like	99.74
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.74
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.73
PLN02860	563	o-succinylbenzoate-CoA ligase	99.73
PLN03051	499	acyl-activating enzyme; Provisional	99.72
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.72
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.72
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.72
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.72
PLN02736	651	long-chain acyl-CoA synthetase	99.71
PRK12467	3956	peptide synthase; Provisional	99.71
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.71
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.71
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.71
PTZ00216	700	acyl-CoA synthetase; Provisional	99.7
PLN02246	537	4-coumarate--CoA ligase	99.69
PRK12316	5163	peptide synthase; Provisional	99.68
PRK12316	5163	peptide synthase; Provisional	99.68
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.68
PRK06145	497	acyl-CoA synthetase; Validated	99.67
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.67
PRK13382	537	acyl-CoA synthetase; Provisional	99.67
PRK04319	570	acetyl-CoA synthetase; Provisional	99.67
PRK12467	3956	peptide synthase; Provisional	99.67
PRK09088	488	acyl-CoA synthetase; Validated	99.66
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.66
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.66
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.66
PRK05691	4334	peptide synthase; Validated	99.66
PRK05691	4334	peptide synthase; Validated	99.66
PRK09192	579	acyl-CoA synthetase; Validated	99.66
PRK07638	487	acyl-CoA synthetase; Validated	99.66
PRK06839	496	acyl-CoA synthetase; Validated	99.66
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.66
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.66
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.66
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.65
PLN02330	546	4-coumarate--CoA ligase-like 1	99.65
PRK07867	529	acyl-CoA synthetase; Validated	99.65
PRK07868	994	acyl-CoA synthetase; Validated	99.65
PRK05852	534	acyl-CoA synthetase; Validated	99.65
PRK13388	540	acyl-CoA synthetase; Provisional	99.65
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.64
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.64
PRK12582	624	acyl-CoA synthetase; Provisional	99.64
PRK12583	558	acyl-CoA synthetase; Provisional	99.64
KOG1175|consensus	626		99.64
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.64
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.64
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.63
PRK13383	516	acyl-CoA synthetase; Provisional	99.63
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.63
PRK06164	540	acyl-CoA synthetase; Validated	99.63
PRK08315	559	AMP-binding domain protein; Validated	99.63
PRK13390	501	acyl-CoA synthetase; Provisional	99.63
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.63
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.62
PRK05857	540	acyl-CoA synthetase; Validated	99.62
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.62
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.62
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.62
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.62
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.62
PRK08316	523	acyl-CoA synthetase; Validated	99.61
PRK07470	528	acyl-CoA synthetase; Validated	99.61
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.61
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.61
KOG1176|consensus	537		99.61
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.61
PRK07787	471	acyl-CoA synthetase; Validated	99.6
PRK07514	504	malonyl-CoA synthase; Validated	99.6
PLN03102	579	acyl-activating enzyme; Provisional	99.6
PRK05850	578	acyl-CoA synthetase; Validated	99.59
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.59
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.59
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.59
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.59
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.58
PRK06178	567	acyl-CoA synthetase; Validated	99.58
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.58
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.57
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.57
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.57
PLN03052	728	acetate--CoA ligase; Provisional	99.56
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.56
PRK13391	511	acyl-CoA synthetase; Provisional	99.55
PRK06188	524	acyl-CoA synthetase; Validated	99.54
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.53
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.52
PRK08162	545	acyl-CoA synthetase; Validated	99.52
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.51
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.51
PRK07798	533	acyl-CoA synthetase; Validated	99.5
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.5
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.49
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.48
PLN02479	567	acetate-CoA ligase	99.47
PRK08308	414	acyl-CoA synthetase; Validated	99.43
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.43
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.42
PLN02736	651	long-chain acyl-CoA synthetase	99.41
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.39
PRK07529	632	AMP-binding domain protein; Validated	99.37
PLN02654	666	acetate-CoA ligase	99.36
KOG1175|consensus	626		99.34
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.32
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.32
PRK06060	705	acyl-CoA synthetase; Validated	99.31
PTZ00342	746	acyl-CoA synthetase; Provisional	99.3
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.3
PLN02614	666	long-chain acyl-CoA synthetase	99.29
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.29
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.27
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.26
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.25
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.24
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.23
PRK07788	549	acyl-CoA synthetase; Validated	99.23
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.23
PRK00174	637	acetyl-CoA synthetase; Provisional	99.22
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.2
PLN03052	728	acetate--CoA ligase; Provisional	99.2
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.17
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.17
PRK13382	537	acyl-CoA synthetase; Provisional	99.17
KOG1179|consensus	649		99.15
PLN02574	560	4-coumarate--CoA ligase-like	99.15
PLN02860	563	o-succinylbenzoate-CoA ligase	99.15
PRK04319	570	acetyl-CoA synthetase; Provisional	99.14
PRK09274	552	peptide synthase; Provisional	99.12
PRK07638	487	acyl-CoA synthetase; Validated	99.09
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.08
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.08
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.08
PTZ00216	700	acyl-CoA synthetase; Provisional	99.07
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.03
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.02
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.01
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	98.99
PRK10946	536	entE enterobactin synthase subunit E; Provisional	98.98
PLN02246	537	4-coumarate--CoA ligase	98.97
PRK09188	365	serine/threonine protein kinase; Provisional	98.97
PRK05852	534	acyl-CoA synthetase; Validated	98.96
PRK07867	529	acyl-CoA synthetase; Validated	98.96
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	98.95
PLN02330	546	4-coumarate--CoA ligase-like 1	98.94
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	98.94
PRK05857	540	acyl-CoA synthetase; Validated	98.93
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	98.93
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.92
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	98.91
PRK06839	496	acyl-CoA synthetase; Validated	98.91
PRK13383	516	acyl-CoA synthetase; Provisional	98.9
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	98.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.9
KOG1177|consensus	596		98.89
PRK07514	504	malonyl-CoA synthase; Validated	98.88
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	98.88
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	98.87
PRK09088	488	acyl-CoA synthetase; Validated	98.87
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	98.87
PRK06145	497	acyl-CoA synthetase; Validated	98.86
PRK13391	511	acyl-CoA synthetase; Provisional	98.86
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	98.85
PRK07470	528	acyl-CoA synthetase; Validated	98.85
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	98.84
PRK06178	567	acyl-CoA synthetase; Validated	98.83
PRK12583	558	acyl-CoA synthetase; Provisional	98.82
PRK06188	524	acyl-CoA synthetase; Validated	98.82
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	98.8
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	98.79
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	98.79
PRK07787	471	acyl-CoA synthetase; Validated	98.78
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	98.77
PRK08315	559	AMP-binding domain protein; Validated	98.77
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	98.77
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	98.76
PRK08316	523	acyl-CoA synthetase; Validated	98.74
PRK08180	614	feruloyl-CoA synthase; Reviewed	98.74
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.71
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	98.7
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	98.7
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	98.68
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	98.67
PLN03051	499	acyl-activating enzyme; Provisional	98.62
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	98.59
KOG1179|consensus	649		98.55
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	98.53
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	98.53
PRK07868	994	acyl-CoA synthetase; Validated	98.48
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	98.47
PTZ00297	1452	pantothenate kinase; Provisional	98.38
KOG1178|consensus	1032		98.36
PRK13390	501	acyl-CoA synthetase; Provisional	98.3
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	98.29
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	98.27
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	98.13
PRK09192	579	acyl-CoA synthetase; Validated	98.1
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	98.09
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	98.06
PLN03102	579	acyl-activating enzyme; Provisional	98.04
PTZ00297	1452	pantothenate kinase; Provisional	98.02
PRK05850	578	acyl-CoA synthetase; Validated	98.0
PRK06164	540	acyl-CoA synthetase; Validated	97.99
PRK13388	540	acyl-CoA synthetase; Provisional	97.93
PRK08308	414	acyl-CoA synthetase; Validated	97.9
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	97.89
PRK06018	542	putative acyl-CoA synthetase; Provisional	97.86
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	97.86
PRK09188	365	serine/threonine protein kinase; Provisional	97.85
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	97.83
PRK08162	545	acyl-CoA synthetase; Validated	97.76
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	97.76
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	97.75
PLN02479	567	acetate-CoA ligase	97.74
PRK07798	533	acyl-CoA synthetase; Validated	97.66
PRK12582	624	acyl-CoA synthetase; Provisional	97.61
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	97.56
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	97.53
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	97.49
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	96.52
KOG1178|consensus	1032		96.09
KOG3628|consensus	1363		95.89
KOG1180|consensus	678		94.78
KOG1256|consensus	691		94.7
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	94.26
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	94.22
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	92.89
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	91.8
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	89.13
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	84.47

>KOG1176|consensus

Probab=99.92  E-value=6.2e-25  Score=208.07  Aligned_cols=154  Identities=18%  Similarity=0.225  Sum_probs=132.5

Q ss_pred             CCCCcccCCCCCcccccceEEEEe----CCCCcccccc-cce--------ecCCcceEEEEEe---eeccccCCcc----
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY----TSGSTGIPKE-YRR--------MYKTGDYGRIVDD---IHRCWSSGDR----  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~----tsGttG~Pkg-~~~--------~~~~g~~Gel~v~---v~~gy~~~~~----  147 (307)
                      +|...+.++||+||++...+....    .+||.|++.. ...        .++++..||||++   ++.||+++|+    
T Consensus       323 l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~  402 (537)
T KOG1176|consen  323 LPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKE  402 (537)
T ss_pred             CCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHh
Confidence            667778999999999866555543    3799999884 222        5778889999999   9999999998    


Q ss_pred             ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeecccC
Q psy8473         148 AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRG  226 (307)
Q Consensus       148 ~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      ..+.++||+|||+|++ +||+|++++|.+|+||.+|+.|+|.|||++|..||.|.|++|++.||+.+++..         
T Consensus       403 ~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p---------  473 (537)
T KOG1176|consen  403 AFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETP---------  473 (537)
T ss_pred             hcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcc---------
Confidence            3334599999999999 599999999999999999999999999999999999999999999999988877         


Q ss_pred             cccccccccccccccccCCcccchhhHHHHHccc
Q psy8473         227 VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       227 ~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                          .+|+.|++      |..+...||.++++++
T Consensus       474 ----~A~VV~k~------g~~lte~di~~~v~k~  497 (537)
T KOG1176|consen  474 ----AAFVVLKK------GSTLTEKDIIEYVRKK  497 (537)
T ss_pred             ----eEEEEecC------CCcCCHHHHHHHHHhh
Confidence                55664433      8899999999999988

>KOG1256|consensus

Probab=99.91  E-value=3.2e-24  Score=203.30  Aligned_cols=84  Identities=21%  Similarity=0.249  Sum_probs=75.9

Q ss_pred             CcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEE-CCeeechhHHHHHHhcCC
Q psy8473         128 TGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKLS  198 (307)
Q Consensus       128 ~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~-~G~~v~~~eiE~~l~~~p  198 (307)
                      .+..||||++   +|.|||++|+    ..+.+||++|||+|++ ++|.|.++||+++++|+ +|++|.|..||+++.+.+
T Consensus       495 ~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~  574 (691)
T KOG1256|consen  495 DGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSL  574 (691)
T ss_pred             CCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCC
Confidence            4556999999   9999999998    6678999999999999 69999999999999998 799999999999999999


Q ss_pred             CcceEEEEEeeCC
Q psy8473         199 EVDKLSVLCYKPG  211 (307)
Q Consensus       199 ~V~~~~v~~~~~~  211 (307)
                      .|.+.+|.+....
T Consensus       575 ~V~qi~V~g~s~~  587 (691)
T KOG1256|consen  575 PVQQIFVLGDSLR  587 (691)
T ss_pred             ceEEEEEECCcch
Confidence            9999888766433

>KOG1177|consensus

Probab=99.88  E-value=1.4e-22  Score=182.50  Aligned_cols=119  Identities=18%  Similarity=0.189  Sum_probs=99.1

Q ss_pred             ecCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473         125 MYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK  196 (307)
Q Consensus       125 ~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~  196 (307)
                      .+|.+..|+|++|   .|.|||++++    ....++||+|||.+.+ ++|+++++||.+|+|+.+|++|+|.|+|+.|..
T Consensus       426 ~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~  505 (596)
T KOG1177|consen  426 EVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNK  505 (596)
T ss_pred             ccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhh
Confidence            4667788999999   8999999776    5567899999999999 599999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCcceEEEEeeecccCcccccccccccccccccCCcccchhhHHHHHccc
Q psy8473         197 LSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       197 ~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                      ||.|.++.|++.+|+..++.+++-......                ..|. ...++|.++++.+
T Consensus       506 hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~----------------~e~~-~t~E~lKa~Ck~k  552 (596)
T KOG1177|consen  506 HPLVKEAHVVGVPDERLGEEVCACVRLQEG----------------AEGK-TTAETLKAMCKGK  552 (596)
T ss_pred             CCCeeeEEEEccCCCcccceEEEEEEeecc----------------cccc-ccHHHHHHHHhcc
Confidence            999999999999999888877554322111                1222 5667788877665

>KOG1180|consensus

Probab=99.86  E-value=1.9e-21  Score=177.92  Aligned_cols=83  Identities=27%  Similarity=0.389  Sum_probs=73.2

Q ss_pred             eEEEEEe---eeccccCCcc------cc-ccccEEeecCeEEE-ECCeEEEeeecCCeEEE-CCeeechhHHHHHHhcCC
Q psy8473         131 YGRIVDD---IHRCWSSGDR------AI-KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKLS  198 (307)
Q Consensus       131 ~Gel~v~---v~~gy~~~~~------~~-~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~-~G~~v~~~eiE~~l~~~p  198 (307)
                      .|||+++   +..|||++++      .. ++.+||+|||+|++ +||.|.+++|++|.+|+ +|++|+++.+|+++..+|
T Consensus       483 rGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p  562 (678)
T KOG1180|consen  483 RGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSP  562 (678)
T ss_pred             CceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCc
Confidence            5999999   9999999998      22 33449999999999 79999999999999998 899999999999999999


Q ss_pred             CcceEEEEEeeCCCc
Q psy8473         199 EVDKLSVLCYKPGEV  213 (307)
Q Consensus       199 ~V~~~~v~~~~~~~~  213 (307)
                      .|.+.+|++......
T Consensus       563 ~V~NICvyAd~~~s~  577 (678)
T KOG1180|consen  563 YVDNICVYADSNKSK  577 (678)
T ss_pred             chhheEEecccccce
Confidence            999999887654433

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.82  E-value=5e-20  Score=174.04  Aligned_cols=154  Identities=20%  Similarity=0.268  Sum_probs=122.8

Q ss_pred             hHHHhhhhhhhccCCCCccCceecChhhHHHhhhhhhccCCCCCcccCCCCCcccccceEEEEe--CCCCcccccccce-
Q psy8473          48 KKKKKRRILAKSCENPAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLY--TSGSTGIPKEYRR-  124 (307)
Q Consensus        48 ~l~~l~~vi~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~yg~te~~~~~a~~~~--tsGttG~Pkg~~~-  124 (307)
                      .|++|+.+...+++         ++.+.+.+..+.+      ++.+.+.||+||++........  ..|++|.|.+.+. 
T Consensus       288 dlssLr~~~SaGEP---------Lnpe~~~w~~~~~------g~~i~d~~gqTEtg~~~~~~~~~~~~g~~g~p~pG~~~  352 (528)
T COG0365         288 DLSSLRVLGSAGEP---------LNPEAFEWFYSAL------GVWILDIYGQTETGMGFIAGRPPVKNGSSGLPLPGYAV  352 (528)
T ss_pred             cchhheeeeccCCC---------CCHHHHHHHHHHh------CCCEeccccccccCccccCCCCCcCCCCCCCCCCCcee
Confidence            45556666555443         5677777666654      3678999999999844333334  6787899985433 


Q ss_pred             --------ecCCcceEEEEEe-----eeccccCCcc---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeech
Q psy8473         125 --------MYKTGDYGRIVDD-----IHRCWSSGDR---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDL  187 (307)
Q Consensus       125 --------~~~~g~~Gel~v~-----v~~gy~~~~~---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~  187 (307)
                              +++.+. |+|+++     ++.+||++++   ..-+.+||.|||.++. +||+++++||.||+||+.|++|.+
T Consensus       353 ~vvdd~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~  431 (528)
T COG0365         353 RRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGP  431 (528)
T ss_pred             EEECCCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEEEeeccceEeccCeeccH
Confidence                    566677 999998     7889999997   2222339999999999 599999999999999999999999


Q ss_pred             hHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         188 SEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       188 ~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .|||++|.+||.|.|++|++.|++..++.+
T Consensus       432 ~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v  461 (528)
T COG0365         432 LEIESVLLAHPAVAEAAVVGVPDPGKGQIV  461 (528)
T ss_pred             HHHHHHHHhCcceeeeEEEeccCCCCCcEE
Confidence            999999999999999999999999888776

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.79  E-value=4.8e-19  Score=175.10  Aligned_cols=123  Identities=16%  Similarity=0.194  Sum_probs=100.6

Q ss_pred             CCCCcccCCCCCcccccceEEEE----eCCCCcccccccce------------ecCCcceEEEEEe---eeccccCCccc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYRR------------MYKTGDYGRIVDD---IHRCWSSGDRA  148 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~~------------~~~~g~~Gel~v~---v~~gy~~~~~~  148 (307)
                      ++++.+++.||+||++..+++..    ...||.|+|.+...            +++.|..|||+++   ++.|||++++.
T Consensus       409 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~  488 (666)
T PLN02614        409 VACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDL  488 (666)
T ss_pred             hcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHH
Confidence            44567899999999875433321    13589999975322            3455678999999   99999999881


Q ss_pred             ---cccccEEeecCeEEE-ECCeEEEeeecCCeEEE-CCeeechhHHHHHHhcCCCcceEEEEEeeC
Q psy8473         149 ---IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKLSEVDKLSVLCYKP  210 (307)
Q Consensus       149 ---~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~-~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~  210 (307)
                         ...++||+|||+|++ ++|+++|+||.+|+||+ +|++|+|.+||+++.++|.|.+++|++.+.
T Consensus       489 T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~  555 (666)
T PLN02614        489 TKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSF  555 (666)
T ss_pred             hhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCC
Confidence               123789999999999 59999999999999996 799999999999999999999999998753

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.78  E-value=1.1e-18  Score=168.47  Aligned_cols=151  Identities=21%  Similarity=0.226  Sum_probs=118.1

Q ss_pred             CCCcccCCCCCcccccceEEEEe-----CCCCcccccccce----------ecCCcceEEEEEe---eeccccCCcccc-
Q psy8473          89 PGESMLHADNNNEQSNDIAIVLY-----TSGSTGIPKEYRR----------MYKTGDYGRIVDD---IHRCWSSGDRAI-  149 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~~-----tsGttG~Pkg~~~----------~~~~g~~Gel~v~---v~~gy~~~~~~~-  149 (307)
                      +...+++.||+||++..+++...     ..|+.|.|.....          ++| |..|||+++   ++.|||++++.. 
T Consensus       316 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~  394 (534)
T COG0318         316 GPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATA  394 (534)
T ss_pred             CCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHH
Confidence            33468999999999876666532     3577788875322          233 668999998   999999998722 


Q ss_pred             -cc--ccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeeccc
Q psy8473         150 -KY--RRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIR  225 (307)
Q Consensus       150 -~~--~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~  225 (307)
                       .+  ++||+|||+|+++ +|++++.||.+|+|+.+|++|+|.|||.++.++|.|.+++|++.+++.+++...+.     
T Consensus       395 ~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~-----  469 (534)
T COG0318         395 EAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAV-----  469 (534)
T ss_pred             HhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEE-----
Confidence             22  4899999999885 89999999999999999999999999999999999999999999999777776332     


Q ss_pred             CcccccccccccccccccCC--cccchhhHHHHHcc
Q psy8473         226 GVDDILLYEGRTDSQVKIRG--NRVDLSEVEAALSK  259 (307)
Q Consensus       226 ~~dg~~~~~gR~dd~ik~~G--~~i~~~eIe~~L~~  259 (307)
                              +..      ..|  ...+..+|.+++++
T Consensus       470 --------v~~------~~~~~~~~~~~~i~~~~~~  491 (534)
T COG0318         470 --------VVL------KPGGDAELTAEELRAFLRK  491 (534)
T ss_pred             --------EEE------cCCCCCCCCHHHHHHHHHh
Confidence                    211      112  23467888888887

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.77  E-value=3.2e-18  Score=164.86  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=101.8

Q ss_pred             CCCCcccCCCCCcccccceEEEEe------------------CCCCcccccccce----------ecCCcceEEEEEe--
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY------------------TSGSTGIPKEYRR----------MYKTGDYGRIVDD--  137 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~------------------tsGttG~Pkg~~~----------~~~~g~~Gel~v~--  137 (307)
                      ++...+++.||+||++..++....                  ..++.|+|.....          +++.|..|||+++  
T Consensus       301 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~  380 (525)
T PRK05851        301 FDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGA  380 (525)
T ss_pred             CChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecC
Confidence            344458999999998654433211                  1246788764322          3567788999998  


Q ss_pred             -eeccccCCccccccccEEeecCeEEEECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         138 -IHRCWSSGDRAIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       138 -v~~gy~~~~~~~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                       ++.|||++++.. .++||+|||++++++|+++++||.+++||++|++|+|.|||+.+.++|.|.++++++.+++..+.
T Consensus       381 ~~~~GY~~~~~~~-~~~~~~TGDl~~~~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~  458 (525)
T PRK05851        381 SMMSGYLGQAPID-PDDWFPTGDLGYLVDGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSA  458 (525)
T ss_pred             chhhccccCCccC-CCCceeccceEEEECCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCC
Confidence             899999988632 36899999999888999999999999999999999999999999999999999999888765543

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.77  E-value=9e-19  Score=167.82  Aligned_cols=117  Identities=22%  Similarity=0.359  Sum_probs=104.6

Q ss_pred             CCcccCCCCCcccccceEEEEe---CCCCcccccccceecCCcceEEEEEe---eeccccCCcc----ccccccEEeecC
Q psy8473          90 GESMLHADNNNEQSNDIAIVLY---TSGSTGIPKEYRRMYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGD  159 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~---tsGttG~Pkg~~~~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD  159 (307)
                      ++++.++||+||++...++...   -.||.|.|.+... +.....|||+++   +|.|||++|+    ..+.+|||+|||
T Consensus       377 Gi~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~e-vKI~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGD  455 (613)
T COG1022         377 GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIE-VKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGD  455 (613)
T ss_pred             CCCeEEEecccccccceEEccccCcccCCcCCcCCCce-EEEccCceEEEecchhcchhcCChHHHhhhccccCCcccCc
Confidence            4779999999999988888754   4799999987665 444557999999   9999999998    556699999999


Q ss_pred             eEEEE-CCeEEEeeecCCeEEE-CCeeechhHHHHHHhcCCCcceEEEEE
Q psy8473         160 YGRIV-DDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKLSEVDKLSVLC  207 (307)
Q Consensus       160 ~g~~~-~g~l~~~GR~~~~i~~-~G~~v~~~eiE~~l~~~p~V~~~~v~~  207 (307)
                      +|.++ +|+|.++||+++.|+. +|++|.|+.||..+..+|.|.++++++
T Consensus       456 lg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg  505 (613)
T COG1022         456 LGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG  505 (613)
T ss_pred             eeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe
Confidence            99994 8999999999999998 899999999999999999999999998

>PRK07529 AMP-binding domain protein; Validated

Probab=99.76  E-value=2.9e-18  Score=168.74  Aligned_cols=129  Identities=18%  Similarity=0.248  Sum_probs=105.6

Q ss_pred             CCCcccCCCCCcccccceEEEEe----CCCCcccccccc--------------eecCCcceEEEEEe---eeccccCCcc
Q psy8473          89 PGESMLHADNNNEQSNDIAIVLY----TSGSTGIPKEYR--------------RMYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~~----tsGttG~Pkg~~--------------~~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      .++++++.||+||++..++....    ..|+.|.|....              .+++.|..|||+++   ++.||++++.
T Consensus       357 ~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~  436 (632)
T PRK07529        357 TGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH  436 (632)
T ss_pred             hCCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc
Confidence            36678999999998765443321    357888887432              24566788999999   8999998765


Q ss_pred             ---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 ---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 ---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                         ....++||+|||+|++ ++|++++.||.+++|+++|++|+|.+||+.+.++|.|.++++++.++...++..
T Consensus       437 ~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~  510 (632)
T PRK07529        437 NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELP  510 (632)
T ss_pred             ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCcee
Confidence               2224789999999999 599999999999999999999999999999999999999999998887666554

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.76  E-value=2.4e-18  Score=169.29  Aligned_cols=125  Identities=17%  Similarity=0.178  Sum_probs=97.4

Q ss_pred             CCCCcccCCCCCcccccceEEEEeC------------------------------CCCccccccc----------ceecC
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYT------------------------------SGSTGIPKEY----------RRMYK  127 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~t------------------------------sGttG~Pkg~----------~~~~~  127 (307)
                      ++...+++.||+||++..+++....                              .++.|+|...          ..+++
T Consensus       335 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~  414 (631)
T PRK07769        335 LPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELP  414 (631)
T ss_pred             CChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCC
Confidence            4445689999999986544332110                              1355665421          22567


Q ss_pred             CcceEEEEEe---eeccccCCccc----c-----------------ccccEEeecCeEEEECCeEEEeeecCCeEEECCe
Q psy8473         128 TGDYGRIVDD---IHRCWSSGDRA----I-----------------KYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGN  183 (307)
Q Consensus       128 ~g~~Gel~v~---v~~gy~~~~~~----~-----------------~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~  183 (307)
                      .|..|||+++   ++.|||++++.    .                 ..++||+|||+|++++|+++++||.+++||++|+
T Consensus       415 ~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~dG~l~i~GR~~d~Ik~~G~  494 (631)
T PRK07769        415 DGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYFDGELYITGRVKDLVIIDGR  494 (631)
T ss_pred             CCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEECCEEEEEcccccEEEECCe
Confidence            8899999999   99999998861    1                 1248999999999999999999999999999999


Q ss_pred             eechhHHHHHHhc-CCCcce--EEEEEeeCCC
Q psy8473         184 RVDLSEVEAALSK-LSEVDK--LSVLCYKPGE  212 (307)
Q Consensus       184 ~v~~~eiE~~l~~-~p~V~~--~~v~~~~~~~  212 (307)
                      +|+|.|||+.+.+ +|.|.+  +++++.+++.
T Consensus       495 ~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~  526 (631)
T PRK07769        495 NHYPQDLEYTAQEATKALRTGYVAAFSVPANQ  526 (631)
T ss_pred             eeCHHHHHHHHHhccccccCCcEEEEEecccc
Confidence            9999999999986 899987  7788888743

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.76  E-value=3.4e-18  Score=168.55  Aligned_cols=128  Identities=19%  Similarity=0.264  Sum_probs=103.7

Q ss_pred             CCcccCCCCCcccccceEEEE----eCCCCcccccccc---------eecCCcceEEEEEe------eeccccCCccc--
Q psy8473          90 GESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYR---------RMYKTGDYGRIVDD------IHRCWSSGDRA--  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~---------~~~~~g~~Gel~v~------v~~gy~~~~~~--  148 (307)
                      ++.+++.||+||++...+...    ...|+.|+|.+..         .+++.|..|||+++      ++.|||++++.  
T Consensus       405 g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~  484 (647)
T PTZ00237        405 KIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFK  484 (647)
T ss_pred             CCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHH
Confidence            466899999999874432211    1137888886432         25677889999997      57899999871  


Q ss_pred             ---cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 ---IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ---~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                         ...++||+|||+|++ ++|+++++||.||+||++|++|+|.|||+++.+||.|.+++|++.+++..+..+
T Consensus       485 ~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~  557 (647)
T PTZ00237        485 QLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVP  557 (647)
T ss_pred             HHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEE
Confidence               123689999999999 599999999999999999999999999999999999999999999988665544

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.76  E-value=8.3e-18  Score=162.51  Aligned_cols=123  Identities=22%  Similarity=0.235  Sum_probs=100.2

Q ss_pred             CCCCcccCCCCCcccccceEEEEe----CCCCcccccccc----------eecCCcceEEEEEe---eeccccCCcccc-
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY----TSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGDRAI-  149 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~----tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~~~~-  149 (307)
                      +++..+++.||+||++..++....    ..++.|+|.+..          .+++.|..|||+++   ++.|||++++.. 
T Consensus       323 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~  402 (539)
T PRK06334        323 FPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQG  402 (539)
T ss_pred             CCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCccccc
Confidence            567789999999998765543321    235678887532          25778889999998   899999998721 


Q ss_pred             ----ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcce------EEEEEeeC
Q psy8473         150 ----KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDK------LSVLCYKP  210 (307)
Q Consensus       150 ----~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~------~~v~~~~~  210 (307)
                          ..++||+|||+|++ ++|++++.||.+++||++|++|+|.|||+++.++|+|.+      +++++.++
T Consensus       403 ~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~  474 (539)
T PRK06334        403 FVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPG  474 (539)
T ss_pred             ceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCC
Confidence                23679999999999 599999999999999999999999999999999999987      56666654

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.75  E-value=3.6e-18  Score=168.76  Aligned_cols=120  Identities=14%  Similarity=0.186  Sum_probs=97.0

Q ss_pred             CcccCCCCCcccccceEEEEe----CCCCccccccccee------------cCCcceEEEEEe---eeccccCCccc---
Q psy8473          91 ESMLHADNNNEQSNDIAIVLY----TSGSTGIPKEYRRM------------YKTGDYGRIVDD---IHRCWSSGDRA---  148 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~~~----tsGttG~Pkg~~~~------------~~~g~~Gel~v~---v~~gy~~~~~~---  148 (307)
                      ..+++.||+||++..++....    ..||.|+|......            .+.+..|||+++   ++.|||++++.   
T Consensus       409 ~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~  488 (660)
T PLN02861        409 SVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEE  488 (660)
T ss_pred             CCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHh
Confidence            457999999998755443221    35899999753331            122346999998   99999999882   


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEE-CCeeechhHHHHHHhcCCCcceEEEEEeeC
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKLSEVDKLSVLCYKP  210 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~-~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~  210 (307)
                      ...++||+|||+|++ ++|+++++||.+|+||+ +|++|+|.+||+++.++|.|.+++|++.+.
T Consensus       489 ~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~  552 (660)
T PLN02861        489 VLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF  552 (660)
T ss_pred             hhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC
Confidence            123799999999999 59999999999999997 799999999999999999999999998763

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.75  E-value=6.5e-18  Score=168.00  Aligned_cols=120  Identities=18%  Similarity=0.199  Sum_probs=97.4

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCccccc-ccce-ec---------CCcceEEEEEe---eeccccCCcc----c
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPK-EYRR-MY---------KTGDYGRIVDD---IHRCWSSGDR----A  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pk-g~~~-~~---------~~g~~Gel~v~---v~~gy~~~~~----~  148 (307)
                      ++.+++.||+||++...+...   ...||.|.|. +... .+         ..+..|||+++   ++.|||++++    .
T Consensus       486 g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~  565 (746)
T PTZ00342        486 NVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNA  565 (746)
T ss_pred             CCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhh
Confidence            567899999999875544332   2468999996 3322 11         12236999998   9999999988    2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEE-CCeeechhHHHHHHhcCCCcceEEEEEee
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKLSEVDKLSVLCYK  209 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~-~G~~v~~~eiE~~l~~~p~V~~~~v~~~~  209 (307)
                      ...++||+|||+|++ ++|+++++||.+++||+ +|++|+|.+||+++.++|.|.+++|++.+
T Consensus       566 f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~  628 (746)
T PTZ00342        566 FTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD  628 (746)
T ss_pred             cCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC
Confidence            334899999999999 59999999999999996 79999999999999999999999999864

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.75  E-value=6.8e-18  Score=163.31  Aligned_cols=152  Identities=20%  Similarity=0.253  Sum_probs=116.7

Q ss_pred             CCcccCCCCCcccccceEEE----EeCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcccccccc
Q psy8473          90 GESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDRAIKYRR  153 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~~~~~~~  153 (307)
                      +..+++.||+||++..+...    ....++.|.|.....         +++.|..|||+++   ++.||++++.....++
T Consensus       348 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~g  427 (549)
T PRK07788        348 GPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDKQIIDG  427 (549)
T ss_pred             CccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeCCCccccccCCCcccccCC
Confidence            34589999999986433221    123477888874322         4677889999999   8899999877555678


Q ss_pred             EEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeecccCcccccc
Q psy8473         154 MYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILL  232 (307)
Q Consensus       154 ~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~dg~~~  232 (307)
                      ||+|||++++ .+|++++.||.+|+||++|++|+|.+||+.+.++|.|.++++++.+++..+..+.+             
T Consensus       428 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a-------------  494 (549)
T PRK07788        428 LLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRA-------------  494 (549)
T ss_pred             ceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEE-------------
Confidence            9999999999 59999999999999999999999999999999999999999998887765554422             


Q ss_pred             cccccccccccCCcccchhhHHHHHccc
Q psy8473         233 YEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       233 ~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                      |+..      ..+..+...+|.++++++
T Consensus       495 ~vv~------~~~~~~~~~~l~~~~~~~  516 (549)
T PRK07788        495 FVVK------APGAALDEDAIKDYVRDN  516 (549)
T ss_pred             EEEe------CCCCCCCHHHHHHHHHHh
Confidence            2211      113345567888887765

>PRK09274 peptide synthase; Provisional

Probab=99.75  E-value=2.5e-17  Score=159.36  Aligned_cols=123  Identities=18%  Similarity=0.191  Sum_probs=97.7

Q ss_pred             CCcccCCCCCcccccceEEEEe-------------CCCCcccccccc------------------eecCCcceEEEEEe-
Q psy8473          90 GESMLHADNNNEQSNDIAIVLY-------------TSGSTGIPKEYR------------------RMYKTGDYGRIVDD-  137 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~-------------tsGttG~Pkg~~------------------~~~~~g~~Gel~v~-  137 (307)
                      ++.+++.||+||++..++....             ...+.|+|....                  .+++.|..|||+++ 
T Consensus       315 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g  394 (552)
T PRK09274        315 DAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAG  394 (552)
T ss_pred             CceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEec
Confidence            4678999999998754332110             122567775321                  23567888999998 


Q ss_pred             --eeccccCCccc------ccccc--EEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEE
Q psy8473         138 --IHRCWSSGDRA------IKYRR--MYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL  206 (307)
Q Consensus       138 --v~~gy~~~~~~------~~~~~--~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~  206 (307)
                        ++.|||++++.      .+.++  ||+|||+|++ ++|++++.||.+++|+++|++|+|.+||+++.++|.|.+++++
T Consensus       395 ~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~  474 (552)
T PRK09274        395 PMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALV  474 (552)
T ss_pred             CcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEE
Confidence              89999999871      12244  9999999999 5999999999999999999999999999999999999999999


Q ss_pred             EeeCCC
Q psy8473         207 CYKPGE  212 (307)
Q Consensus       207 ~~~~~~  212 (307)
                      +.++..
T Consensus       475 ~~~~~~  480 (552)
T PRK09274        475 GVGVPG  480 (552)
T ss_pred             EeCCCC
Confidence            887654

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.74  E-value=1.9e-17  Score=163.05  Aligned_cols=127  Identities=22%  Similarity=0.250  Sum_probs=104.8

Q ss_pred             CcccCCCCCcccccceEEEE-----eCCCCcccccccce---------ecCCcceEEEEEe-----eeccccCCcc----
Q psy8473          91 ESMLHADNNNEQSNDIAIVL-----YTSGSTGIPKEYRR---------MYKTGDYGRIVDD-----IHRCWSSGDR----  147 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~~-----~tsGttG~Pkg~~~---------~~~~g~~Gel~v~-----v~~gy~~~~~----  147 (307)
                      +.+++.||+||++..++...     ...|+.|.|...+.         +++.|..|||+++     ++.|||++++    
T Consensus       396 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~  475 (637)
T PRK00174        396 CPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVK  475 (637)
T ss_pred             CceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHH
Confidence            56899999999876544322     12467888875332         4677889999997     7899999987    


Q ss_pred             --ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 --AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 --~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                        ....++||+|||++++ ++|+++++||.+++||++|++|+|.|||+++.++|.|.+++|++.+++..++.+
T Consensus       476 ~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~  548 (637)
T PRK00174        476 TYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGI  548 (637)
T ss_pred             hhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEE
Confidence              1234789999999999 599999999999999999999999999999999999999999999887666555

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.74  E-value=1.2e-17  Score=166.38  Aligned_cols=130  Identities=18%  Similarity=0.159  Sum_probs=105.6

Q ss_pred             CCCCcccCCCCCcccccceEEEE---eCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCccc-ccc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDRA-IKY  151 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~~-~~~  151 (307)
                      +++..+++.||+||++.......   ...++.|+|.....         +++.|..|||+++   ++.|||++++. ...
T Consensus       284 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~  363 (705)
T PRK06060        284 FGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVAN  363 (705)
T ss_pred             cCCCceEeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhhCCCcccccC
Confidence            45677899999999864432221   23467788875322         5678889999998   89999999873 334


Q ss_pred             ccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         152 RRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       152 ~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ++||+|||++++ ++|+++++||.+++||++|++|+|.+||+.+..+|.|.+++|++.++...+..+
T Consensus       364 ~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~  430 (705)
T PRK06060        364 EGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTL  430 (705)
T ss_pred             CCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeE
Confidence            789999999999 599999999999999999999999999999999999999999988876554433

>PLN02654 acetate-CoA ligase

Probab=99.74  E-value=2.1e-17  Score=163.50  Aligned_cols=127  Identities=17%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             CcccCCCCCcccccceEEE-----EeCCCCcccccccce---------ecCCcceEEEEEe-----eeccccCCccc---
Q psy8473          91 ESMLHADNNNEQSNDIAIV-----LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD-----IHRCWSSGDRA---  148 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~-----~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~-----v~~gy~~~~~~---  148 (307)
                      +.+.+.||+||++...+..     ....|+.|.|...+.         +++.+..|+|+++     ++.|||++++.   
T Consensus       426 ~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~  505 (666)
T PLN02654        426 CPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYET  505 (666)
T ss_pred             CceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHH
Confidence            4589999999987543321     224688898875332         3556667999997     78899999871   


Q ss_pred             ---cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 ---IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ---~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                         ...++||+|||++++ ++|+++++||.+++||++|++|+|.|||+++.++|.|.+++|++.+++..++.+
T Consensus       506 ~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~  578 (666)
T PLN02654        506 TYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGI  578 (666)
T ss_pred             hhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEE
Confidence               223789999999999 599999999999999999999999999999999999999999999988766655

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.74  E-value=9.1e-18  Score=162.91  Aligned_cols=129  Identities=17%  Similarity=0.229  Sum_probs=104.5

Q ss_pred             CCCCcccCCCCCcccccceEEE-----EeCCCCcccccccc----------eecCCcceEEEEEe---eeccccCCcc--
Q psy8473          88 IPGESMLHADNNNEQSNDIAIV-----LYTSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGDR--  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~-----~~tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~~--  147 (307)
                      +++..+++.||+||++...+..     ....++.|+|....          .+++.|..|||+++   ++.||+++++  
T Consensus       343 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t  422 (560)
T PLN02574        343 LPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKAT  422 (560)
T ss_pred             CCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHh
Confidence            5677899999999986433221     12346778776422          24677889999999   8999999987  


Q ss_pred             --ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473         148 --AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV  216 (307)
Q Consensus       148 --~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~  216 (307)
                        ....++||+|||+|++ ++|++++.||.+|+||++|++|++.+||+.+..+|.|.++++++.++...+..
T Consensus       423 ~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~  494 (560)
T PLN02574        423 QSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEI  494 (560)
T ss_pred             hhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcc
Confidence              2234789999999999 59999999999999999999999999999999999999999998887655443

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.74  E-value=7.8e-18  Score=149.14  Aligned_cols=116  Identities=19%  Similarity=0.301  Sum_probs=100.4

Q ss_pred             ecCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473         125 MYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK  196 (307)
Q Consensus       125 ~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~  196 (307)
                      ++++|+.|+|..+   .++|||+.++    ..+.+|+|+|||+.+. ++|++.+.||.+|+|+.+|++|..+|||+.|.+
T Consensus       379 pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~  458 (542)
T COG1021         379 PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLR  458 (542)
T ss_pred             CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhh
Confidence            7889999999999   8899999888    6678999999999999 599999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCcceEEEEeeecccCcccccccccccccccccCCcccchhhHHHHHccc
Q psy8473         197 LSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       197 ~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                      ||.|.+++++..+|...++..+..                    |..++..+...++..+|.+.
T Consensus       459 HP~V~~AAlVampDelLGEksCAf--------------------iv~~~~~~~~~qlr~~L~~~  502 (542)
T COG1021         459 HPAVHDAALVAMPDELLGEKSCAF--------------------IVVKEPPLRAAQLRRFLRER  502 (542)
T ss_pred             CchhhhhhhhcCchhhcCcceeEE--------------------EEecCCCCCHHHHHHHHHHc
Confidence            999999999999998777776433                    33334446677788777654

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.73  E-value=3.1e-17  Score=161.22  Aligned_cols=128  Identities=20%  Similarity=0.215  Sum_probs=105.3

Q ss_pred             CCcccCCCCCcccccceEEE-----EeCCCCcccccccce---------ecC-CcceEEEEEe-----eeccccCCcc--
Q psy8473          90 GESMLHADNNNEQSNDIAIV-----LYTSGSTGIPKEYRR---------MYK-TGDYGRIVDD-----IHRCWSSGDR--  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~-----~~tsGttG~Pkg~~~---------~~~-~g~~Gel~v~-----v~~gy~~~~~--  147 (307)
                      ++.+++.||+||++..++..     ....|+.|.|...+.         +++ .|..|||+++     ++.|||++++  
T Consensus       386 ~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~  465 (625)
T TIGR02188       386 RCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERF  465 (625)
T ss_pred             CCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHH
Confidence            35689999999987654332     123578888874333         455 7889999998     7899999987  


Q ss_pred             ----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 ----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 ----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                          ....++||+|||++++ ++|+++++||.+|+||++|++|+|.+||+++.++|.|.+++|++.+++..++.+
T Consensus       466 ~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~  540 (625)
T TIGR02188       466 VDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAI  540 (625)
T ss_pred             HHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEE
Confidence                1234789999999999 599999999999999999999999999999999999999999999888766655

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.73  E-value=3.7e-17  Score=158.77  Aligned_cols=130  Identities=21%  Similarity=0.311  Sum_probs=103.5

Q ss_pred             CCCCcccCCCCCcccccceEEEEe--------------------------CCCCccccccccee-c---CCcceEEEEEe
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY--------------------------TSGSTGIPKEYRRM-Y---KTGDYGRIVDD  137 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~--------------------------tsGttG~Pkg~~~~-~---~~g~~Gel~v~  137 (307)
                      +++..+++.||+||++..+++...                          ...+.|+|...... +   ..+..|||+++
T Consensus       312 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~~g~~Gel~v~  391 (563)
T PLN02860        312 FPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTR  391 (563)
T ss_pred             cCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCCCCceeEEEEe
Confidence            567789999999998754433211                          11256777643321 1   14678999999


Q ss_pred             ---eeccccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEee
Q psy8473         138 ---IHRCWSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK  209 (307)
Q Consensus       138 ---v~~gy~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~  209 (307)
                         ++.|||++++    ....++||+|||+|++ ++|++++.||.+++|+++|++|+|.+||+++..+|.|.++++++.+
T Consensus       392 g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~  471 (563)
T PLN02860        392 GPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVP  471 (563)
T ss_pred             cCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEe
Confidence               8999999887    2234789999999999 5999999999999999999999999999999999999999999998


Q ss_pred             CCCcceEE
Q psy8473         210 PGEVDQVS  217 (307)
Q Consensus       210 ~~~~~~~~  217 (307)
                      +...++.+
T Consensus       472 ~~~~~~~~  479 (563)
T PLN02860        472 DSRLTEMV  479 (563)
T ss_pred             cCcCCceE
Confidence            87665554

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.72  E-value=4.3e-17  Score=156.04  Aligned_cols=124  Identities=14%  Similarity=0.178  Sum_probs=95.9

Q ss_pred             CcccCCCCCcccccceEEE----EeCCCCcccccccce---------ecCCc--ceEEEEEe---e--eccccCCcccc-
Q psy8473          91 ESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYRR---------MYKTG--DYGRIVDD---I--HRCWSSGDRAI-  149 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~~---------~~~~g--~~Gel~v~---v--~~gy~~~~~~~-  149 (307)
                      ..+++.||+||++...+..    ....|+.|.|.....         +++.|  ..|||+++   +  +.|||+++... 
T Consensus       264 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~~~~  343 (499)
T PLN03051        264 KPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKV  343 (499)
T ss_pred             ceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcccce
Confidence            5579999999976432211    113578888864222         45666  47999998   3  57999765311 


Q ss_pred             ----------ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhc-CCCcceEEEEEeeCCCcc
Q psy8473         150 ----------KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK-LSEVDKLSVLCYKPGEVD  214 (307)
Q Consensus       150 ----------~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~-~p~V~~~~v~~~~~~~~~  214 (307)
                                ...+||+|||+|++ ++|+++++||.+++||++|++|+|.|||+++.+ ||.|.+++|++.+++..+
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g  420 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGG  420 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCC
Confidence                      11237999999999 499999999999999999999999999999986 999999999999887766

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.72  E-value=2.8e-17  Score=163.34  Aligned_cols=122  Identities=26%  Similarity=0.265  Sum_probs=97.7

Q ss_pred             CCCcccCCCCCcccccceEEEE---eCCCCccccccccee--c-----------CCcceEEEEEe---eeccccCCcc--
Q psy8473          89 PGESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRRM--Y-----------KTGDYGRIVDD---IHRCWSSGDR--  147 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~~--~-----------~~g~~Gel~v~---v~~gy~~~~~--  147 (307)
                      .++.+++.||+||++...++..   ...|+.|.|......  +           .++..|||+++   ++.|||++++  
T Consensus       444 ~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T  523 (696)
T PLN02387        444 LGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKT  523 (696)
T ss_pred             cCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHH
Confidence            3566899999999976554432   245889998754331  1           12235999999   9999999988  


Q ss_pred             --cc--ccc--cEEeecCeEEE-ECCeEEEeeecCCeEEE-CCeeechhHHHHHHhcCCCcceEEEEEeeC
Q psy8473         148 --AI--KYR--RMYKTGDYGRI-VDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKLSEVDKLSVLCYKP  210 (307)
Q Consensus       148 --~~--~~~--~~~~tGD~g~~-~~g~l~~~GR~~~~i~~-~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~  210 (307)
                        ..  +.+  +||+|||+|++ ++|+++++||.+++||+ +|++|+|.+||+++.++|.|.+++|++.+.
T Consensus       524 ~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~  594 (696)
T PLN02387        524 DEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF  594 (696)
T ss_pred             hhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCC
Confidence              11  223  49999999999 59999999999999998 699999999999999999999999988653

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.72  E-value=5e-17  Score=159.84  Aligned_cols=128  Identities=21%  Similarity=0.263  Sum_probs=102.6

Q ss_pred             CCcccCCCCCcccccceEEEE-------eCCCCcccccccc----------eecCCcceEEEEEe------eeccccCCc
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-------YTSGSTGIPKEYR----------RMYKTGDYGRIVDD------IHRCWSSGD  146 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-------~tsGttG~Pkg~~----------~~~~~g~~Gel~v~------v~~gy~~~~  146 (307)
                      +..+++.||+||++..++...       ...|+.|+|....          .+++.|..|||+++      .+.+||+++
T Consensus       379 ~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~  458 (628)
T TIGR02316       379 GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDD  458 (628)
T ss_pred             CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCCh
Confidence            456899999999874433221       1247788887422          24667888999998      457888887


Q ss_pred             cc-------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         147 RA-------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       147 ~~-------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +.       ...++||+|||+|++ ++|+++++||.|++||++|++|+|.|||+++.++|.|.+++|++.+++..++.+
T Consensus       459 ~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~  537 (628)
T TIGR02316       459 ARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVA  537 (628)
T ss_pred             HHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEE
Confidence            61       123679999999999 599999999999999999999999999999999999999999999988766655

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.72  E-value=7.3e-17  Score=152.67  Aligned_cols=126  Identities=19%  Similarity=0.189  Sum_probs=101.5

Q ss_pred             CCcccCCCCCcccccceEEEE-----eCCCCcccccccce-ecCCcceEEEEEe---eeccccCCccccccccEEeecCe
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-----YTSGSTGIPKEYRR-MYKTGDYGRIVDD---IHRCWSSGDRAIKYRRMYKTGDY  160 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-----~tsGttG~Pkg~~~-~~~~g~~Gel~v~---v~~gy~~~~~~~~~~~~~~tGD~  160 (307)
                      +..+++.||+||++..++...     ...+++|+|..... .+..+..|||+++   ++.||++++.  ..++||+|||+
T Consensus       254 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~g~~Gel~v~g~~~~~gY~~~~~--~~~g~~~TGDl  331 (452)
T PRK07445        254 QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPANQTGNITIQAQSLALGYYPQIL--DSQGIFETDDL  331 (452)
T ss_pred             CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcCCCcceEEEeCCccchhhcCCcc--CCCCEEECCCE
Confidence            566899999999875443321     13467888875433 1224678999998   8999998643  34689999999


Q ss_pred             EEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         161 GRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       161 g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +++ ++|++++.||.+++|+++|++|+|.+||+.+.++|.|.++++++.+++..+..+
T Consensus       332 ~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~  389 (452)
T PRK07445        332 GYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV  389 (452)
T ss_pred             EEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEE
Confidence            999 599999999999999999999999999999999999999999998887655544

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.72  E-value=6.3e-17  Score=158.68  Aligned_cols=125  Identities=18%  Similarity=0.220  Sum_probs=97.4

Q ss_pred             CCCCcccCCCCCcccccceEEEEe------------------------------CCCCccccccc----------ceecC
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY------------------------------TSGSTGIPKEY----------RRMYK  127 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~------------------------------tsGttG~Pkg~----------~~~~~  127 (307)
                      +|...+++.||+||++..+++...                              ..++.|+|...          ..+++
T Consensus       346 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~  425 (612)
T PRK12476        346 LPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELP  425 (612)
T ss_pred             CCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCC
Confidence            455568999999998644332210                              11467877642          33567


Q ss_pred             CcceEEEEEe---eeccccCCccc----c------------------ccccEEeecCeEEEECCeEEEeeecCCeEEECC
Q psy8473         128 TGDYGRIVDD---IHRCWSSGDRA----I------------------KYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRG  182 (307)
Q Consensus       128 ~g~~Gel~v~---v~~gy~~~~~~----~------------------~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G  182 (307)
                      .|..|||+++   ++.|||++++.    .                  ..++||+|||+|++++|+++++||.+++||++|
T Consensus       426 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~dG~l~i~GR~~d~I~~~G  505 (612)
T PRK12476        426 DGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYLDGELYITGRIADLIVIDG  505 (612)
T ss_pred             CCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeECCEEEEEeccCcEEEECC
Confidence            8889999999   89999999871    1                  123699999999889999999999999999999


Q ss_pred             eeechhHHHHHHhc-CCCcce--EEEEEeeCCC
Q psy8473         183 NRVDLSEVEAALSK-LSEVDK--LSVLCYKPGE  212 (307)
Q Consensus       183 ~~v~~~eiE~~l~~-~p~V~~--~~v~~~~~~~  212 (307)
                      ++|+|.|||+.+.+ +|.|.+  +++++.+++.
T Consensus       506 ~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~  538 (612)
T PRK12476        506 RNHYPQDIEATVAEASPMVRRGYVTAFTVPAED  538 (612)
T ss_pred             cccCHHHHHHHHHHhcccccCCcEEEEEecCCC
Confidence            99999999999985 799998  5566666655

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.71  E-value=2.5e-17  Score=162.59  Aligned_cols=119  Identities=21%  Similarity=0.191  Sum_probs=96.2

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCccccccccee--c-----------CCcceEEEEEe---eeccccCCcc---
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRRM--Y-----------KTGDYGRIVDD---IHRCWSSGDR---  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~~--~-----------~~g~~Gel~v~---v~~gy~~~~~---  147 (307)
                      ++.+++.||+||++..++...   ...|+.|+|.+....  +           ..+..|||+++   ++.|||++++   
T Consensus       401 g~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~  480 (651)
T PLN02736        401 GGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTR  480 (651)
T ss_pred             CCCeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHH
Confidence            456899999999876544332   246889998753331  1           11235999999   9999999987   


Q ss_pred             -ccccccEEeecCeEEE-ECCeEEEeeecCCeEEE-CCeeechhHHHHHHhcCCCcceEEEEEe
Q psy8473         148 -AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKLSEVDKLSVLCY  208 (307)
Q Consensus       148 -~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~-~G~~v~~~eiE~~l~~~p~V~~~~v~~~  208 (307)
                       ....++||+|||+|++ ++|+++++||.+++||+ +|++|+|.+||+.+..+|.|.+++|++.
T Consensus       481 ~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~  544 (651)
T PLN02736        481 EVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD  544 (651)
T ss_pred             hhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec
Confidence             2234799999999999 59999999999999997 7999999999999999999999999873

>PRK12467 peptide synthase; Provisional

Probab=99.71  E-value=3.4e-17  Score=186.60  Aligned_cols=126  Identities=27%  Similarity=0.357  Sum_probs=104.6

Q ss_pred             CCCCcccCCCCCcccccceEEEEeCC--------CCcccccccce---------ecCCcceEEEEEe---eeccccCCcc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYTS--------GSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~ts--------GttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      +++..++|.||+||++..+++...+.        .+.|+|.+...         ++|.|..|||+++   +++||+++++
T Consensus      3375 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~ 3454 (3956)
T PRK12467       3375 LKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPS 3454 (3956)
T ss_pred             CCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcchhhhhhccCCcc
Confidence            56778999999999987665543321        45788875332         7889999999999   9999999987


Q ss_pred             -------c----cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCc
Q psy8473         148 -------A----IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEV  213 (307)
Q Consensus       148 -------~----~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~  213 (307)
                             .    ....+||+|||+|++ ++|+++++||.|++||++|++|+|+|||+++.++|+|.+++|++.++...
T Consensus      3455 ~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~ 3532 (3956)
T PRK12467       3455 LTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGAGG 3532 (3956)
T ss_pred             cchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecCCCC
Confidence                   0    124679999999999 69999999999999999999999999999999999999999987754433

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.71  E-value=7.4e-17  Score=156.58  Aligned_cols=129  Identities=18%  Similarity=0.214  Sum_probs=105.5

Q ss_pred             CCCcccCCCCCcccccceEEEEe---CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc----cc
Q psy8473          89 PGESMLHADNNNEQSNDIAIVLY---TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR----AI  149 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~~---tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~----~~  149 (307)
                      +++.+++.||+||++...+....   ..|+.|.|.....         +++.|..|||+++   ++.||+++++    ..
T Consensus       350 ~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~  429 (562)
T PRK05677        350 TGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEIL  429 (562)
T ss_pred             cCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEECCCCCCCCCCCCeEEEEecCccchhhcCCchhhhhcc
Confidence            35678999999998765443322   2467888775332         4678889999999   8999999987    22


Q ss_pred             ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ..++||+|||+|++ ++|.+++.||.+++++++|++|+|.+||+.+..+|.|.++++++.++...+..+
T Consensus       430 ~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~  498 (562)
T PRK05677        430 DSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAI  498 (562)
T ss_pred             CCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceE
Confidence            34789999999999 599999999999999999999999999999999999999999998877655444

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.71  E-value=5.2e-17  Score=172.72  Aligned_cols=129  Identities=22%  Similarity=0.318  Sum_probs=103.8

Q ss_pred             CCCCcccCCCCCcccccceEEEEeC--------------CCCccccccc-----------ceecCCcceEEEEEe---ee
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYT--------------SGSTGIPKEY-----------RRMYKTGDYGRIVDD---IH  139 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~t--------------sGttG~Pkg~-----------~~~~~~g~~Gel~v~---v~  139 (307)
                      .++.+++|.||+||++..+++...+              ..+.|.|...           ..+++.|..|||+++   ++
T Consensus       553 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~  632 (1389)
T TIGR03443       553 AENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLA  632 (1389)
T ss_pred             CCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccc
Confidence            5678899999999998766654322              1345666542           135778899999999   99


Q ss_pred             ccccCCccc----c----------------------------ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeec
Q psy8473         140 RCWSSGDRA----I----------------------------KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVD  186 (307)
Q Consensus       140 ~gy~~~~~~----~----------------------------~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~  186 (307)
                      .||+++++.    .                            ..++||+|||+|++ ++|.++++||.|++||++|++|+
T Consensus       633 ~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~  712 (1389)
T TIGR03443       633 EGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIE  712 (1389)
T ss_pred             hhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEec
Confidence            999998861    0                            12589999999999 59999999999999999999999


Q ss_pred             hhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473         187 LSEVEAALSKLSEVDKLSVLCYKPGEVDQV  216 (307)
Q Consensus       187 ~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~  216 (307)
                      |.|||+++.++|.|.+++++..++......
T Consensus       713 p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~  742 (1389)
T TIGR03443       713 LGEIDTHLSQHPLVRENVTLVRRDKDEEPT  742 (1389)
T ss_pred             HHHHHHHHHhCcchheeEEEEeeCCCCCeE
Confidence            999999999999999999887766554433

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.71  E-value=5.4e-17  Score=160.38  Aligned_cols=121  Identities=17%  Similarity=0.237  Sum_probs=97.4

Q ss_pred             CCCCcccCCCCCcccccceEEEE----eCCCCcccccccce------------ecCCcceEEEEEe---eeccccCCccc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYRR------------MYKTGDYGRIVDD---IHRCWSSGDRA  148 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~~------------~~~~g~~Gel~v~---v~~gy~~~~~~  148 (307)
                      +.++.+++.||+||++...+...    ...|+.|.|.+...            +.+.+..|||+++   ++.|||++++.
T Consensus       406 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~  485 (660)
T PLN02430        406 TSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPEL  485 (660)
T ss_pred             hcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHH
Confidence            33456899999999876544432    13589999875332            1223346999998   99999999882


Q ss_pred             ---cccccEEeecCeEEE-ECCeEEEeeecCCeEEE-CCeeechhHHHHHHhcCCCcceEEEEEe
Q psy8473         149 ---IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKLSEVDKLSVLCY  208 (307)
Q Consensus       149 ---~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~-~G~~v~~~eiE~~l~~~p~V~~~~v~~~  208 (307)
                         ...++||+|||+|++ ++|+++++||.+++||+ +|++|+|.+||+.+.++|.|.+++|++.
T Consensus       486 t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~  550 (660)
T PLN02430        486 TEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGD  550 (660)
T ss_pred             hhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEec
Confidence               224799999999999 59999999999999997 6999999999999999999999999874

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.70  E-value=6.3e-17  Score=160.98  Aligned_cols=117  Identities=19%  Similarity=0.187  Sum_probs=93.6

Q ss_pred             cccCCCCCcccccceEEEE---eCCCCccccccccee-----------cCCcceEEEEEe---eeccccCCcc----ccc
Q psy8473          92 SMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRRM-----------YKTGDYGRIVDD---IHRCWSSGDR----AIK  150 (307)
Q Consensus        92 ~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~~-----------~~~g~~Gel~v~---v~~gy~~~~~----~~~  150 (307)
                      .+++.||+||++...+...   ...|+.|+|.+....           .+++..|||+++   ++.|||++++    ...
T Consensus       454 ~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~  533 (700)
T PTZ00216        454 MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLD  533 (700)
T ss_pred             hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhcc
Confidence            5899999999875444322   246889999864431           233456999999   9999999988    233


Q ss_pred             cccEEeecCeEEE-ECCeEEEeeecCCeEE-ECCeeechhHHHHHHhcCCCcce--EEEEEe
Q psy8473         151 YRRMYKTGDYGRI-VDDILLYEGRTDSQVK-IRGNRVDLSEVEAALSKLSEVDK--LSVLCY  208 (307)
Q Consensus       151 ~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~-~~G~~v~~~eiE~~l~~~p~V~~--~~v~~~  208 (307)
                      .++||+|||+|++ ++|+++++||.+++|| .+|++|+|++||+++.++|.|.+  ++++..
T Consensus       534 ~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~  595 (700)
T PTZ00216        534 EDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVH  595 (700)
T ss_pred             ccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEe
Confidence            4789999999999 5999999999999998 79999999999999999999986  344444

>PLN02246 4-coumarate--CoA ligase

Probab=99.69  E-value=1.9e-16  Score=152.84  Aligned_cols=131  Identities=23%  Similarity=0.257  Sum_probs=105.7

Q ss_pred             CCCCCcccCCCCCcccccceEEE--------EeCCCCccccccc----------ceecCCcceEEEEEe---eeccccCC
Q psy8473          87 NIPGESMLHADNNNEQSNDIAIV--------LYTSGSTGIPKEY----------RRMYKTGDYGRIVDD---IHRCWSSG  145 (307)
Q Consensus        87 ~~~~~~~~~~yg~te~~~~~a~~--------~~tsGttG~Pkg~----------~~~~~~g~~Gel~v~---v~~gy~~~  145 (307)
                      .+++..+++.||+||++...+..        ...+|+.|+|...          ..+++.|..|||+++   ++.||+++
T Consensus       321 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~  400 (537)
T PLN02246        321 KLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLND  400 (537)
T ss_pred             HcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCC
Confidence            35677789999999987543321        1235778887632          225677888999998   89999998


Q ss_pred             cc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         146 DR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       146 ~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ++    ....++||+|||++++ ++|++++.||.+++++.+|++|+|.+||+.+..+|+|.++++++.++...+..+
T Consensus       401 ~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  477 (537)
T PLN02246        401 PEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVP  477 (537)
T ss_pred             chhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCcee
Confidence            87    2234689999999999 589999999999999999999999999999999999999999988776555443

>PRK12316 peptide synthase; Provisional

Probab=99.68  E-value=2.2e-16  Score=182.87  Aligned_cols=125  Identities=26%  Similarity=0.345  Sum_probs=103.2

Q ss_pred             CCCCcccCCCCCcccccceEEEEeC----C----CCcccccccce---------ecCCcceEEEEEe---eeccccCCcc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYT----S----GSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~t----s----GttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      +++..++|.||+||++..+++....    .    .+.|+|.+...         ++|.|..|||+++   ++.||+++++
T Consensus      2285 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~ 2364 (5163)
T PRK12316       2285 LRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYLNRPG 2364 (5163)
T ss_pred             CCCcEEEECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEECCCCCCCCCCCeeEEEecchhhcccccCChh
Confidence            5677899999999997665543321    1    35677765332         6789999999999   9999999987


Q ss_pred             ----c-------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCC
Q psy8473         148 ----A-------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE  212 (307)
Q Consensus       148 ----~-------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~  212 (307)
                          .       ....+||+|||+|++ ++|.++++||.|++||++|++|+|+|||+.+.++|+|.+++|++.++..
T Consensus      2365 ~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~ 2441 (5163)
T PRK12316       2365 LTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGAS 2441 (5163)
T ss_pred             hhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecCC
Confidence                1       013579999999999 5999999999999999999999999999999999999999998876653

>PRK12316 peptide synthase; Provisional

Probab=99.68  E-value=2.1e-16  Score=183.04  Aligned_cols=122  Identities=29%  Similarity=0.413  Sum_probs=102.8

Q ss_pred             CCCCcccCCCCCcccccceEEEEe-----CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCccc--
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY-----TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDRA--  148 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~-----tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~~--  148 (307)
                      .++.+++|.||+||++..+++...     .+++.|+|.+...         ++|.|..|||+++   ++.||+++++.  
T Consensus       794 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~  873 (5163)
T PRK12316        794 LPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTA  873 (5163)
T ss_pred             CCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCceEEEecccccChhhCCChhhhh
Confidence            567889999999999865544432     2456788874332         6788999999998   99999999871  


Q ss_pred             --------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEee
Q psy8473         149 --------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK  209 (307)
Q Consensus       149 --------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~  209 (307)
                              ....+||+|||++++ ++|.++++||.|++||++|++|+|+|||+++.++|.|.+++|++.+
T Consensus       874 ~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~  943 (5163)
T PRK12316        874 ERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD  943 (5163)
T ss_pred             hhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC
Confidence                    134679999999999 5999999999999999999999999999999999999999998876

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.68  E-value=2.9e-16  Score=155.18  Aligned_cols=128  Identities=14%  Similarity=0.124  Sum_probs=101.2

Q ss_pred             CCCcccCCCCCcccccceEE----EEeCCCCcccccccce---------ecCCcceEEEEEe-----eeccccCCccc--
Q psy8473          89 PGESMLHADNNNEQSNDIAI----VLYTSGSTGIPKEYRR---------MYKTGDYGRIVDD-----IHRCWSSGDRA--  148 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~----~~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~-----v~~gy~~~~~~--  148 (307)
                      ++..+.+.||+||++.....    .....|+.|.|...+.         ++ .|..|||+++     ++.|||++++.  
T Consensus       409 ~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~  487 (655)
T PRK03584        409 ADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSR  487 (655)
T ss_pred             CCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-CCCceEEEEccCCCCCcceeeCCCccch
Confidence            35668999999997543221    1224577887764322         33 5778999998     67899998861  


Q ss_pred             ------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 ------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                            ....+||+|||++++ ++|+++++||.|++||++|++|+|.|||+++.++|.|.++++++.+++..++.+
T Consensus       488 ~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~  563 (655)
T PRK03584        488 YRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRM  563 (655)
T ss_pred             HHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEE
Confidence                  123578999999999 599999999999999999999999999999999999999999999887666555

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.67  E-value=3.1e-16  Score=149.76  Aligned_cols=129  Identities=18%  Similarity=0.230  Sum_probs=104.8

Q ss_pred             CCCCcccCCCCCcccccceEEEEe-----CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc---
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY-----TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR---  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~-----tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~---  147 (307)
                      +++..+++.||+||++...+....     ..|+.|+|.....         +++.+..|||+++   ++.||+++++   
T Consensus       288 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~  367 (497)
T PRK06145        288 FTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTA  367 (497)
T ss_pred             cCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEECcchhhhhcCChHHHH
Confidence            556778999999999875444321     2467888875322         4567888999998   8999999877   


Q ss_pred             ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473         148 AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV  216 (307)
Q Consensus       148 ~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~  216 (307)
                      ....++||+|||++++ .+|+++++||.+++++++|++++|.+||+.+..+|.|.++++++.++...+..
T Consensus       368 ~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~  437 (497)
T PRK06145        368 EAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGER  437 (497)
T ss_pred             HHHhCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCce
Confidence            2224689999999999 59999999999999999999999999999999999999999998877654443

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.67  E-value=4.6e-16  Score=151.06  Aligned_cols=129  Identities=18%  Similarity=0.232  Sum_probs=104.6

Q ss_pred             CCCcccCCCCCcccccceEEEEe----CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc----c
Q psy8473          89 PGESMLHADNNNEQSNDIAIVLY----TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR----A  148 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~~----tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~----~  148 (307)
                      +++.+++.||+||++..++....    ..|+.|+|.....         +++.|..|||+++   ++.|||++++    .
T Consensus       357 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~  436 (562)
T PRK12492        357 TGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEA  436 (562)
T ss_pred             hCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCCCceEEEEeCCccccccccCchhhhhc
Confidence            45678999999998765443222    2477888774322         4677888999998   8999999887    2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ...++||+|||++++ ++|++++.||.+++++++|++++|.+||..+.++|.|.++++++.++...+..+
T Consensus       437 ~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  506 (562)
T PRK12492        437 LDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAV  506 (562)
T ss_pred             ccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceE
Confidence            224689999999999 599999999999999999999999999999999999999999988776554443

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.67  E-value=3.3e-16  Score=151.30  Aligned_cols=127  Identities=21%  Similarity=0.235  Sum_probs=102.0

Q ss_pred             CcccCCCCCcccccceEEE----EeCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCccccccccE
Q psy8473          91 ESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDRAIKYRRM  154 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~~~~~~~~  154 (307)
                      ..+++.||+||++...+..    ....++.|+|.....         +++.|..|||+++   ++.||+........++|
T Consensus       338 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~g~  417 (537)
T PRK13382        338 DVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYTSGSTKDFHDGF  417 (537)
T ss_pred             CcEEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCccccchhhccCCC
Confidence            4589999999987543322    223578888875332         5678889999998   89999833223334789


Q ss_pred             EeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         155 YKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       155 ~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      |+|||++++ ++|++++.||.+++||++|++|+|.+||..+.++|+|.++++++.++...++.+
T Consensus       418 ~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~  481 (537)
T PRK13382        418 MASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRL  481 (537)
T ss_pred             EeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEE
Confidence            999999999 589999999999999999999999999999999999999999998877555444

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.67  E-value=3.2e-16  Score=152.38  Aligned_cols=128  Identities=20%  Similarity=0.191  Sum_probs=104.7

Q ss_pred             CCcccCCCCCcccccceEEE----EeCCCCcccccccce---------ecCCcceEEEEEe-----eeccccCCcc---c
Q psy8473          90 GESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD-----IHRCWSSGDR---A  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~-----v~~gy~~~~~---~  148 (307)
                      +..+++.||+||++...+..    ...+|+.|.|.....         +++.|..|||+++     ++.|||++++   .
T Consensus       348 g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~  427 (570)
T PRK04319        348 GLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYES  427 (570)
T ss_pred             CCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhh
Confidence            45689999999987654332    124688898874332         4567889999995     7889999887   2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ...++||+|||++++ ++|++++.||.+++|+++|++|+|.+||+.+.++|.|.++++++.++...++.+
T Consensus       428 ~~~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~  497 (570)
T PRK04319        428 YFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEII  497 (570)
T ss_pred             hhcCCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEE
Confidence            223689999999999 599999999999999999999999999999999999999999998887666555

>PRK12467 peptide synthase; Provisional

Probab=99.67  E-value=3.8e-16  Score=178.21  Aligned_cols=124  Identities=27%  Similarity=0.385  Sum_probs=103.4

Q ss_pred             CCCCcccCCCCCcccccceEEEEeC--------CCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYT--------SGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~t--------sGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      +++..++|.||+||++..+++...+        +.+.|+|.+...         ++|.|..|||+++   ++.||+++++
T Consensus      1858 ~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~ 1937 (3956)
T PRK12467       1858 LPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVAGELYLGGVGLARGYLNRPA 1937 (3956)
T ss_pred             CCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEeccccccccccCChh
Confidence            5667789999999998766654322        346788775332         6889999999999   9999999987


Q ss_pred             --------cc---ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCC
Q psy8473         148 --------AI---KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPG  211 (307)
Q Consensus       148 --------~~---~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~  211 (307)
                              .+   ...+||+|||++++ ++|.++++||.|++||++|++|+|+|||+.+.++|+|.+++|++.+..
T Consensus      1938 ~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~~~ 2013 (3956)
T PRK12467       1938 LTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQDGA 2013 (3956)
T ss_pred             hhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEecCC
Confidence                    01   13579999999999 699999999999999999999999999999999999999999887633

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.66  E-value=4.1e-16  Score=148.62  Aligned_cols=126  Identities=18%  Similarity=0.242  Sum_probs=102.2

Q ss_pred             CCcccCCCCCcccccceEEE------EeCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc----
Q psy8473          90 GESMLHADNNNEQSNDIAIV------LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR----  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~------~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~----  147 (307)
                      ++.+++.||+||++...++.      ....|+.|.|.....         +++.|..|||+++   ++.||+++++    
T Consensus       276 g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~  355 (488)
T PRK09088        276 GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATAR  355 (488)
T ss_pred             CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhhhh
Confidence            46689999999987543221      123577888775333         3567788999999   8999999876    


Q ss_pred             ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         148 AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       148 ~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                      ....++||+|||++++ ++|.+++.||.+++|+.+|++++|.++|+++..+|.|.++++++.++...+.
T Consensus       356 ~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~  424 (488)
T PRK09088        356 AFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGE  424 (488)
T ss_pred             hhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCc
Confidence            2234789999999999 5999999999999999999999999999999999999999999887764443

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.66  E-value=4.2e-16  Score=153.95  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=99.2

Q ss_pred             CCcccCCCCCcccccceEEE----EeCCCCcccccccce---------ecCCcceEEEEEe-----eeccccCCccc---
Q psy8473          90 GESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD-----IHRCWSSGDRA---  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~-----v~~gy~~~~~~---  148 (307)
                      +..+.+.||+||.+......    ....|+.|.|...+.         ++ .|..|||+++     ++.|||++++.   
T Consensus       411 ~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~  489 (652)
T TIGR01217       411 DVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKY  489 (652)
T ss_pred             CceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCC-CCCccEEEEecCCCccccceeCCCccchh
Confidence            34467899999964222111    123477777753222         33 3678999998     67899999861   


Q ss_pred             -----cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 -----IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 -----~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                           ...++||+|||+|++ ++|+++++||.|++||++|++|+|.|||+++.+||.|.+++|++.+++..++.+
T Consensus       490 ~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~  564 (652)
T TIGR01217       490 RDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRV  564 (652)
T ss_pred             HHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEE
Confidence                 123678999999999 599999999999999999999999999999999999999999999988776665

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.66  E-value=6.2e-16  Score=152.14  Aligned_cols=128  Identities=23%  Similarity=0.293  Sum_probs=101.6

Q ss_pred             CCcccCCCCCcccccceEEE-------EeCCCCcccccccc----------eecCCcceEEEEEe------eeccccCCc
Q psy8473          90 GESMLHADNNNEQSNDIAIV-------LYTSGSTGIPKEYR----------RMYKTGDYGRIVDD------IHRCWSSGD  146 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~-------~~tsGttG~Pkg~~----------~~~~~g~~Gel~v~------v~~gy~~~~  146 (307)
                      +..+++.||+||++..++..       ....|+.|.|....          .+++.|..|||+++      ++.+||+++
T Consensus       380 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~  459 (629)
T PRK10524        380 GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDD  459 (629)
T ss_pred             CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCCh
Confidence            45689999999987432221       12347788887422          24677889999997      467898887


Q ss_pred             cc-------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         147 RA-------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       147 ~~-------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +.       ...++||+|||++++ ++|++++.||.+|+||++|++|+|.|||+++.++|.|.++++++.++...++.+
T Consensus       460 ~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~  538 (629)
T PRK10524        460 DRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVA  538 (629)
T ss_pred             HHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEE
Confidence            61       113579999999999 599999999999999999999999999999999999999999999887665544

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.66  E-value=5.5e-16  Score=149.67  Aligned_cols=128  Identities=16%  Similarity=0.227  Sum_probs=102.0

Q ss_pred             CCcccCCCCCcccccceEEEEeC-----CCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc--ccc
Q psy8473          90 GESMLHADNNNEQSNDIAIVLYT-----SGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR--AIK  150 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~t-----sGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~--~~~  150 (307)
                      ++.+++.||+||++...+.....     .++.|.|.....         +++.|..|||+++   ++.||+++++  ...
T Consensus       335 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~  414 (538)
T TIGR03208       335 GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTD  414 (538)
T ss_pred             CCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCCcEEEEecCcccccccCCccccccc
Confidence            46689999999987543322211     245677753222         4567888999998   8899999887  223


Q ss_pred             cccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         151 YRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       151 ~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .++||+|||++++ ++|++++.||.+++++++|++|+|.+||+++..+|.|.++++++.++...+..+
T Consensus       415 ~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~  482 (538)
T TIGR03208       415 AEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERA  482 (538)
T ss_pred             CCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceE
Confidence            5789999999999 599999999999999999999999999999999999999999988877654444

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK05691 peptide synthase; Validated

Probab=99.66  E-value=4.7e-16  Score=178.67  Aligned_cols=123  Identities=32%  Similarity=0.479  Sum_probs=102.3

Q ss_pred             CCCCcccCCCCCcccccceEEEEeCCC-------Ccccccccce---------ecCCcceEEEEEe---eeccccCCccc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYTSG-------STGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDRA  148 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~tsG-------ttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~~  148 (307)
                      .|+.+++|.||+||++..+++...+..       ..|+|.+...         ++|.|..|||+++   +++||+++++.
T Consensus      4007 ~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~ 4086 (4334)
T PRK05691       4007 YPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLR 4086 (4334)
T ss_pred             CCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCCceEEEEecccccccccCCccc
Confidence            678889999999999987776544321       3566653222         5789999999999   99999999871


Q ss_pred             -----------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeC
Q psy8473         149 -----------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKP  210 (307)
Q Consensus       149 -----------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~  210 (307)
                                 ....+||+|||++++ +||.+.++||.|++||++|++|+++|||+.+.++|+|.+++|.....
T Consensus      4087 t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~~ 4160 (4334)
T PRK05691       4087 TALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEG 4160 (4334)
T ss_pred             chhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEecC
Confidence                       124689999999999 69999999999999999999999999999999999999988765543

>PRK05691 peptide synthase; Validated

Probab=99.66  E-value=6.5e-16  Score=177.54  Aligned_cols=126  Identities=25%  Similarity=0.323  Sum_probs=104.0

Q ss_pred             CCCCcccCCCCCcccccceEEEEe-----CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCccc--
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY-----TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDRA--  148 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~-----tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~~--  148 (307)
                      +|+..++|.||+||++..+++...     ..++.|+|.+...         ++|.|..|||+++   ++.||+++++.  
T Consensus      1412 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~ 1491 (4334)
T PRK05691       1412 LPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTA 1491 (4334)
T ss_pred             CCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCCCCCCceEEEecCcccchhhcCCccccH
Confidence            677889999999999866554332     2356788875432         6788999999998   99999999871  


Q ss_pred             ---------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCc
Q psy8473         149 ---------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEV  213 (307)
Q Consensus       149 ---------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~  213 (307)
                               ....+||+|||++++ ++|.++++||.|++||++|++|+|+|||+.+.++|.|.+++|+...+...
T Consensus      1492 ~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~ 1566 (4334)
T PRK05691       1492 ERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGAAG 1566 (4334)
T ss_pred             hhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCC
Confidence                     123479999999999 69999999999999999999999999999999999999999887655443

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.66  E-value=1.3e-15  Score=148.34  Aligned_cols=89  Identities=16%  Similarity=0.221  Sum_probs=77.9

Q ss_pred             ecCCcceEEEEEe---eeccccCCcc---ccccccEEeecCeEEEECCeEEEeeecCCeEEECCeeechhHHHHHHhcCC
Q psy8473         125 MYKTGDYGRIVDD---IHRCWSSGDR---AIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLS  198 (307)
Q Consensus       125 ~~~~g~~Gel~v~---v~~gy~~~~~---~~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p  198 (307)
                      +++.+..|||+++   ++.|||++++   ....++||+|||++++.+|+++++||.+|+|+++|++|+|.+||+++.++|
T Consensus       405 ~~~~g~~Gel~i~g~~~~~gY~~~~~~~~~~~~dgw~~TGDlg~~~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p  484 (579)
T PRK09192        405 PLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLLDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEP  484 (579)
T ss_pred             CCCCCCEEEEEecCCchhhhhcCCccccccccCCceeeccceeeEECCEEEEEeccccEEEECCCccCHHHHHHHHHhcC
Confidence            4566788999998   8999999854   233478999999998899999999999999999999999999999999999


Q ss_pred             Ccc--eEEEEEeeCCCc
Q psy8473         199 EVD--KLSVLCYKPGEV  213 (307)
Q Consensus       199 ~V~--~~~v~~~~~~~~  213 (307)
                      .|.  ++++++.+++..
T Consensus       485 ~V~~~~~~v~~~~~~~~  501 (579)
T PRK09192        485 ELRSGDAAAFSIAQENG  501 (579)
T ss_pred             CccCCcEEEEEeccCCC
Confidence            998  788888877653

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.66  E-value=5.2e-16  Score=147.95  Aligned_cols=130  Identities=17%  Similarity=0.184  Sum_probs=106.3

Q ss_pred             CCCCcccCCCCCcccccceEEEE----eCCCCcccccccc---------eecCCcceEEEEEe---eeccccCCcc---c
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYR---------RMYKTGDYGRIVDD---IHRCWSSGDR---A  148 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~---------~~~~~g~~Gel~v~---v~~gy~~~~~---~  148 (307)
                      +|+..+++.||+||++.......    ...++.|.|....         .+++.|..|||+++   ++.||+++++   .
T Consensus       277 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~  356 (487)
T PRK07638        277 FPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARE  356 (487)
T ss_pred             cCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCCHHHHhh
Confidence            57888999999999885433321    1346788887321         25778889999999   8899999876   3


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ...++||+|||++++ ++|++++.||.+++|+++|.+|+|.++|+.+..+|.|.++++++.+++..+...
T Consensus       357 ~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  426 (487)
T PRK07638        357 LNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKP  426 (487)
T ss_pred             hccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCee
Confidence            345789999999999 499999999999999999999999999999999999999999988876554444

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.66  E-value=6.9e-16  Score=147.11  Aligned_cols=128  Identities=20%  Similarity=0.249  Sum_probs=104.7

Q ss_pred             CCcccCCCCCcccccceEEE-----EeCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc---cc
Q psy8473          90 GESMLHADNNNEQSNDIAIV-----LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR---AI  149 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~-----~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~---~~  149 (307)
                      ++.+.+.||+||++...+..     .+..|+.|.|.....         +++.|..|||+++   ++.||+++++   ..
T Consensus       288 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~  367 (496)
T PRK06839        288 GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEET  367 (496)
T ss_pred             CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHH
Confidence            45688999999987643322     234678888874322         3577889999999   8899999887   22


Q ss_pred             ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ..++||+|||++++ ++|++++.||.+++|+.+|.+|+|.++|+.+..+|.|.++++++.++...+..+
T Consensus       368 ~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~  436 (496)
T PRK06839        368 IQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIP  436 (496)
T ss_pred             HcCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceE
Confidence            24689999999999 599999999999999999999999999999999999999999998877665544

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.66  E-value=1.6e-15  Score=144.95  Aligned_cols=122  Identities=25%  Similarity=0.373  Sum_probs=98.1

Q ss_pred             CCCCcccCCCCCcccccceEEEEe--------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY--------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~--------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      +|++.+++.||+||++...+....        ..++.|.|...+.         +++.|..|+|+++   ++.||+++++
T Consensus       282 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~  361 (502)
T TIGR01734       282 FPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPE  361 (502)
T ss_pred             CCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEccccccccccCCcc
Confidence            678889999999998654333221        1245666664322         4677888999998   8999999877


Q ss_pred             c-------cccccEEeecCeEEEECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEee
Q psy8473         148 A-------IKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK  209 (307)
Q Consensus       148 ~-------~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~  209 (307)
                      .       ....+||+|||+|+++++++++.||.+++|+++|++|+|.+||+.+.++|.|.++++++..
T Consensus       362 ~~~~~~~~~~~~~~~~TGDlg~~~~~~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~  430 (502)
T TIGR01734       362 KTAEAFFSHEGQPAYRTGDAGTITDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKY  430 (502)
T ss_pred             cchHhheeCCCcEEEECCCEEEEECCEEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEE
Confidence            1       1234699999999997669999999999999999999999999999999999999998754

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.66  E-value=8.3e-16  Score=148.76  Aligned_cols=128  Identities=19%  Similarity=0.286  Sum_probs=102.5

Q ss_pred             CCcccCCCCCcccccceEEEEe-----CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc--ccc
Q psy8473          90 GESMLHADNNNEQSNDIAIVLY-----TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR--AIK  150 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~-----tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~--~~~  150 (307)
                      +..+++.||+||++...+....     ..++.|.|.....         +++.|..|+|+++   ++.||+++++  ...
T Consensus       337 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~  416 (547)
T PRK13295        337 GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD  416 (547)
T ss_pred             CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCCCeEEEEcCcccccccCCccccccC
Confidence            5668999999998754332211     1245677664222         4677888999998   8999999887  222


Q ss_pred             cccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         151 YRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       151 ~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .++||+|||++++ ++|++++.||.+++++++|++|+|.+||+.+.+++.|.++++++.++...+..+
T Consensus       417 ~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~  484 (547)
T PRK13295        417 ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERA  484 (547)
T ss_pred             CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEE
Confidence            5789999999999 599999999999999999999999999999999999999999998877655544

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.66  E-value=9.3e-16  Score=162.22  Aligned_cols=120  Identities=27%  Similarity=0.376  Sum_probs=97.7

Q ss_pred             CCCcccCCCCCcccccceEEEEeC----------CCCcccccccc---------eecCCcceEEEEEe---eeccccCCc
Q psy8473          89 PGESMLHADNNNEQSNDIAIVLYT----------SGSTGIPKEYR---------RMYKTGDYGRIVDD---IHRCWSSGD  146 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~~t----------sGttG~Pkg~~---------~~~~~g~~Gel~v~---v~~gy~~~~  146 (307)
                      ++..++|.||+||++..+++....          +.+.|.|....         .+++.|..|||+++   ++.||++++
T Consensus       741 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~~~  820 (1296)
T PRK10252        741 TGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRP  820 (1296)
T ss_pred             CCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEecccccchhhCCCc
Confidence            466799999999988665544321          23466666432         26788999999999   899999988


Q ss_pred             cc----------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEe
Q psy8473         147 RA----------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCY  208 (307)
Q Consensus       147 ~~----------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~  208 (307)
                      +.          ....+||+|||+|++ ++|.++++||.|++||++|++|++.|||+++.++|+|.+++++..
T Consensus       821 ~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~  893 (1296)
T PRK10252        821 DLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHAC  893 (1296)
T ss_pred             ccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEE
Confidence            71          124579999999999 599999999999999999999999999999999999999977644

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.65  E-value=6.3e-16  Score=148.86  Aligned_cols=128  Identities=17%  Similarity=0.235  Sum_probs=101.9

Q ss_pred             CCcccCCCCCcccccceEEEE----eCCCCcccccc--cc--------eecCCcceEEEEEe---eeccccCCcc----c
Q psy8473          90 GESMLHADNNNEQSNDIAIVL----YTSGSTGIPKE--YR--------RMYKTGDYGRIVDD---IHRCWSSGDR----A  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg--~~--------~~~~~g~~Gel~v~---v~~gy~~~~~----~  148 (307)
                      +..+++.||+||++...+...    ...++.|.|..  ..        .+++.|..|+|+++   ++.||+++++    .
T Consensus       324 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~  403 (527)
T TIGR02275       324 GCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAA  403 (527)
T ss_pred             CCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhh
Confidence            456899999999653221111    12356788762  21        14667889999998   8999999887    2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ...++||+|||++++ ++|++++.||.+++|+++|++|+|.+||+.+..+|.|.++++++.++...++.+
T Consensus       404 ~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~  473 (527)
T TIGR02275       404 FDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKS  473 (527)
T ss_pred             cCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEE
Confidence            334689999999999 589999999999999999999999999999999999999999999877655444

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.65  E-value=4.7e-16  Score=150.44  Aligned_cols=130  Identities=21%  Similarity=0.236  Sum_probs=104.0

Q ss_pred             CCCCcccCCCCCcccccceEEE--------EeCCCCcccccccc----------eecCCcceEEEEEe---eeccccCCc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIV--------LYTSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGD  146 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~--------~~tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~  146 (307)
                      +++..+++.||+||++......        ....++.|.|....          .+++.|..|||+++   ++.||++++
T Consensus       327 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~  406 (546)
T PLN02330        327 FPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNK  406 (546)
T ss_pred             cCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCc
Confidence            5678899999999986432211        11235677776422          24677889999998   899999988


Q ss_pred             c----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         147 R----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       147 ~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +    ....++||+|||++++ ++|++++.||.+++++++|++|+|.+||+++.++|.|.++++++.++...+...
T Consensus       407 ~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~  482 (546)
T PLN02330        407 EETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIP  482 (546)
T ss_pred             cchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCcee
Confidence            7    2234789999999999 599999999999999999999999999999999999999999988776555443

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.65  E-value=9.6e-16  Score=147.81  Aligned_cols=128  Identities=14%  Similarity=0.188  Sum_probs=101.5

Q ss_pred             CCcccCCCCCcccccceEEEE-eCCCCcccccccce--------ecCCcc------------eEEEEE-e---eeccccC
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-YTSGSTGIPKEYRR--------MYKTGD------------YGRIVD-D---IHRCWSS  144 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-~tsGttG~Pkg~~~--------~~~~g~------------~Gel~v-~---v~~gy~~  144 (307)
                      +..+++.||+||++..++... +..++.|.|.....        +++.|.            .|||++ +   ++.||++
T Consensus       290 g~~l~~~YG~TE~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~  369 (529)
T PRK07867        290 GCVVVDGFGSTEGGVAITRTPDTPPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYN  369 (529)
T ss_pred             CCcEEEeecccccccccccCCCCCCCCcCCCCCCEEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccC
Confidence            567899999999874433211 12466777664322        234445            799998 6   8999999


Q ss_pred             Ccc---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         145 GDR---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       145 ~~~---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +++   ....++||+|||++++ ++|++++.||.+++++++|++|+|.+||+.+..+|.|.+++|++.+++..+..+
T Consensus       370 ~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~  446 (529)
T PRK07867        370 DPEADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQV  446 (529)
T ss_pred             ChHhhhhhhcCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeE
Confidence            987   2224789999999999 599999999999999999999999999999999999999999999887666554

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.65  E-value=1.6e-15  Score=156.03  Aligned_cols=125  Identities=17%  Similarity=0.063  Sum_probs=95.2

Q ss_pred             CCCCcccCCCCCcccccceEEE-EeCCCCcccccccc-----------------------eecCCcceEEEEEeeecccc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIV-LYTSGSTGIPKEYR-----------------------RMYKTGDYGRIVDDIHRCWS  143 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~-~~tsGttG~Pkg~~-----------------------~~~~~g~~Gel~v~v~~gy~  143 (307)
                      ++++.+++.||+||++...+.. ....|+.|+|.+..                       ..++.|..|||+++ ..+|+
T Consensus       742 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~-~~~~~  820 (994)
T PRK07868        742 FAPAHVVEFFATTDGQAVLANVSGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLAR-ARGPI  820 (994)
T ss_pred             hCchheeeeeecccccccccccCCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEe-cCCCC
Confidence            5557789999999976433221 12457899987543                       23456778999886 22233


Q ss_pred             CCcc------ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCc
Q psy8473         144 SGDR------AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEV  213 (307)
Q Consensus       144 ~~~~------~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~  213 (307)
                      +...      ....++||+|||+|++ .||+++++||.|++||++|++|+|.|||+++.++|.|.+++|++.+++..
T Consensus       821 ~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~  897 (994)
T PRK07868        821 DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGR  897 (994)
T ss_pred             ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCCC
Confidence            2211      1124799999999999 59999999999999999999999999999999999999999999887653

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.65  E-value=6e-16  Score=149.26  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=100.7

Q ss_pred             CCcccCCCCCcccccceEEEE-----------eCCCCcccccccce--------ecCCcceEEEEEe---eeccccCCcc
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-----------YTSGSTGIPKEYRR--------MYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-----------~tsGttG~Pkg~~~--------~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      +..+++.||+||++..++...           ...|+.|.+.|+..        +++.|..|||+++   ++.||+++++
T Consensus       320 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~  399 (534)
T PRK05852        320 AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPT  399 (534)
T ss_pred             CCChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCceEEEEecCcccchhcCCcc
Confidence            456899999999875443211           12234443333322        5677889999998   8999999887


Q ss_pred             ---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 ---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 ---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                         ....++||+|||++++ ++|++++.||.+++++.+|.+++|.++|+++.++|.|.++++++.++...+..+
T Consensus       400 ~t~~~~~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~  473 (534)
T PRK05852        400 ITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAV  473 (534)
T ss_pred             cchhhhcCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceE
Confidence               2234689999999999 599999999999999999999999999999999999999999998876554444

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.65  E-value=1.4e-15  Score=147.09  Aligned_cols=128  Identities=16%  Similarity=0.242  Sum_probs=100.0

Q ss_pred             CCcccCCCCCcccccceEEEE-eCCCCccccccccee--------c-------------CCcceEEEEEe----eecccc
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-YTSGSTGIPKEYRRM--------Y-------------KTGDYGRIVDD----IHRCWS  143 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-~tsGttG~Pkg~~~~--------~-------------~~g~~Gel~v~----v~~gy~  143 (307)
                      +..+++.||+||++..+.... ...|+.|.|......        +             +.+..|||+++    ++.||+
T Consensus       288 ~~~l~~~YG~tE~~~~~~~~~~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~  367 (540)
T PRK13388        288 GCQVEDGYGSSEGAVIVVREPGTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYY  367 (540)
T ss_pred             CCceecccccccccceeecCCCCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEecCCccccccc
Confidence            466899999999875433211 235677877743221        1             23457999985    899999


Q ss_pred             CCccc---cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         144 SGDRA---IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       144 ~~~~~---~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ++++.   ...++||+|||++++ ++|++++.||.+++|+++|++|+|.+||+++..+|.|.++++++.++...+..+
T Consensus       368 ~~~~~t~~~~~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~  445 (540)
T PRK13388        368 NNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQV  445 (540)
T ss_pred             CChHHHHHHhhcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCcee
Confidence            98872   223689999999999 599999999999999999999999999999999999999999998876555433

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.64  E-value=1.7e-15  Score=151.18  Aligned_cols=128  Identities=20%  Similarity=0.157  Sum_probs=98.9

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCccccccccee-c----CCcceEEEEEe---eeccccCC--ccc--------
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRRM-Y----KTGDYGRIVDD---IHRCWSSG--DRA--------  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~~-~----~~g~~Gel~v~---v~~gy~~~--~~~--------  148 (307)
                      ++.+++.||+||++...+...   ...|+.|+|...... +    ..+..|||+++   ++.|||++  ++.        
T Consensus       504 g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~~~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~  583 (718)
T PRK08043        504 GLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAEN  583 (718)
T ss_pred             CCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecCCCCCCceEEEEecCCccccccCCCCccccccccccc
Confidence            567899999999875544321   246888988753331 1    12346999998   89999983  320        


Q ss_pred             ---cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 ---IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ---~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                         ...++||+|||+|++ ++|++++.||.+|+|+++|++|+|.|||+.+.+++.+.++++++.++...++.+
T Consensus       584 ~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~  656 (718)
T PRK08043        584 ARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEAL  656 (718)
T ss_pred             ccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceE
Confidence               123689999999999 599999999999999999999999999999999988888888877776655554

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.64  E-value=1.6e-15  Score=147.14  Aligned_cols=128  Identities=16%  Similarity=0.252  Sum_probs=103.1

Q ss_pred             CCcccCCCCCcccccceEEEE----eCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc----cc
Q psy8473          90 GESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR----AI  149 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~----~~  149 (307)
                      +..+++.||+||++..++...    ...|+.|.|.....         +++.|..|||+++   ++.||+++++    ..
T Consensus       354 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  433 (560)
T PRK08751        354 GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVM  433 (560)
T ss_pred             CCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCccchhhcCChhhhhhcc
Confidence            456899999999876544322    23567787763222         4667888999998   8899999887    22


Q ss_pred             ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ..++||+|||++++ ++|++++.||.+++++++|++++|.+||+.+..+|.|.++++++.++...+..+
T Consensus       434 ~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~  502 (560)
T PRK08751        434 DADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIV  502 (560)
T ss_pred             ccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceE
Confidence            24689999999999 599999999999999999999999999999999999999999988876554433

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.64  E-value=7.5e-16  Score=151.43  Aligned_cols=128  Identities=14%  Similarity=0.191  Sum_probs=101.7

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCcccccccce--ecCCcceEEEEEe---eeccccCCccc----cccccEEee
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR--MYKTGDYGRIVDD---IHRCWSSGDRA----IKYRRMYKT  157 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~--~~~~g~~Gel~v~---v~~gy~~~~~~----~~~~~~~~t  157 (307)
                      ++.+++.||+||++..++...   ...|+.|+|.....  .++.|..|||+++   ++.|||++++.    ...++||+|
T Consensus       377 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~T  456 (624)
T PRK12582        377 RIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRL  456 (624)
T ss_pred             CceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEccCCCceEEEEECCcccccccCCccchhhhcCccCCccc
Confidence            345899999999875443211   23578899885443  4577889999999   89999999872    224799999


Q ss_pred             cCeEEE-E----CCeEEEeeecCCeEEE-CCeeechhHHH--HHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         158 GDYGRI-V----DDILLYEGRTDSQVKI-RGNRVDLSEVE--AALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       158 GD~g~~-~----~g~l~~~GR~~~~i~~-~G~~v~~~eiE--~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ||+|++ +    +|+++++||.++++++ +|++|+|.++|  .++.++|.|.+++|++.+++..+..+
T Consensus       457 GDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~lv  524 (624)
T PRK12582        457 GDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLA  524 (624)
T ss_pred             cceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEEEE
Confidence            999998 3    4799999999999986 79999998885  67889999999999998777655554

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.64  E-value=2.5e-15  Score=145.46  Aligned_cols=130  Identities=15%  Similarity=0.130  Sum_probs=103.1

Q ss_pred             CCCCcccCCCCCcccccceEEEE------eCCCCcccccccc---------eecCCcceEEEEEe---eeccccCCccc-
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVL------YTSGSTGIPKEYR---------RMYKTGDYGRIVDD---IHRCWSSGDRA-  148 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~------~tsGttG~Pkg~~---------~~~~~g~~Gel~v~---v~~gy~~~~~~-  148 (307)
                      ++...+++.||+||++...+...      ...++.|.|....         .+++.|..|||+++   ++.||++++.. 
T Consensus       341 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~  420 (558)
T PRK12583        341 MHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEAT  420 (558)
T ss_pred             cCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCeeEEEEEeCccchhhcCChHHH
Confidence            44456889999999876543321      1246677776322         24667888999998   88999998871 


Q ss_pred             ---cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 ---IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ---~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                         ...++||+|||++++ ++|++++.||.+++++++|++|+|.+||+.+..+|.|.++++++.++...+..+
T Consensus       421 ~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~  493 (558)
T PRK12583        421 AESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEI  493 (558)
T ss_pred             HhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEE
Confidence               225789999999999 599999999999999999999999999999999999999999998876544433

>KOG1175|consensus

Probab=99.64  E-value=8.6e-16  Score=146.32  Aligned_cols=142  Identities=19%  Similarity=0.207  Sum_probs=112.8

Q ss_pred             cChhhHHHhhhhhhccCCCCCcccCCCCCcccccceEEE-----EeCCCCcccccccce---------ecCCc-ceEEEE
Q psy8473          71 LSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIV-----LYTSGSTGIPKEYRR---------MYKTG-DYGRIV  135 (307)
Q Consensus        71 ~~~~~l~~~~~~~~~~~~~~~~~~~~yg~te~~~~~a~~-----~~tsGttG~Pkg~~~---------~~~~g-~~Gel~  135 (307)
                      ++.+.++.+.+.+...     .+++.||+||++.+++.-     ...+|+.+.|--.+.         +++.. ..|+|+
T Consensus       371 i~~~~~ew~~~~~~~~-----pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~  445 (626)
T KOG1175|consen  371 INPEAWEWWKRVTGLD-----PIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELR  445 (626)
T ss_pred             CCcchHHHHHHhcCcc-----chhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCCceeEEE
Confidence            4566666665554333     479999999998765542     134566666653222         34443 679998


Q ss_pred             Ee------eeccccCCcc------ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcce
Q psy8473         136 DD------IHRCWSSGDR------AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDK  202 (307)
Q Consensus       136 v~------v~~gy~~~~~------~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~  202 (307)
                      +.      .+++||++++      ...+.++|.|||.++.+ +|+++++||.||.|+++|+++++.|||+++..||.|.|
T Consensus       446 ~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaE  525 (626)
T KOG1175|consen  446 LKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAE  525 (626)
T ss_pred             EeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhh
Confidence            87      7889999988      34468899999999995 99999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCcceEE
Q psy8473         203 LSVLCYKPGEVDQVS  217 (307)
Q Consensus       203 ~~v~~~~~~~~~~~~  217 (307)
                      ++|++.+++..++.+
T Consensus       526 sAvVg~p~~~~ge~v  540 (626)
T KOG1175|consen  526 SAVVGSPDPIKGEVV  540 (626)
T ss_pred             eeeecCCCCCCCeEE
Confidence            999999999888887

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.64  E-value=1.2e-15  Score=147.47  Aligned_cols=128  Identities=18%  Similarity=0.160  Sum_probs=102.0

Q ss_pred             CCcccCCCCCcccccceEEE--EeCCCCcccccccce---------ecCCcceEEEEEe------eeccccCCcc---cc
Q psy8473          90 GESMLHADNNNEQSNDIAIV--LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD------IHRCWSSGDR---AI  149 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~--~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~------v~~gy~~~~~---~~  149 (307)
                      +..+++.||+||++..++..  ....|+.|.|.....         +++.|..|||+++      ++.||+++++   ..
T Consensus       317 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~  396 (542)
T PRK06155        317 GVDLLDGYGSTETNFVIAVTHGSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEA  396 (542)
T ss_pred             CCCEEeeecccccCccccCCCCCCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHh
Confidence            56689999999987654332  113466777653221         4677888999997      5789998876   22


Q ss_pred             ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ..++||+|||++++ ++|++++.||.+|+++++|.+++|.+||+++.++|+|.++++++.++...+..+
T Consensus       397 ~~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~  465 (542)
T PRK06155        397 WRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEV  465 (542)
T ss_pred             hcCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceE
Confidence            24789999999999 599999999999999999999999999999999999999999988876554443

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.64  E-value=1.8e-15  Score=138.67  Aligned_cols=119  Identities=23%  Similarity=0.285  Sum_probs=96.0

Q ss_pred             CCcccCCCCCcccccceEEEEeCCCCcccccccceecCCcceEEEEEe---eeccccCCccc--cccccEEeecCeEEEE
Q psy8473          90 GESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDD---IHRCWSSGDRA--IKYRRMYKTGDYGRIV  164 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~tsGttG~Pkg~~~~~~~g~~Gel~v~---v~~gy~~~~~~--~~~~~~~~tGD~g~~~  164 (307)
                      ++++++.||+||++..+.       ..|.|........  ..|+|+++   ++.||+++++.  ...++||+|||+++++
T Consensus       175 ~~~v~~~YG~TE~~~~~~-------~~G~~~~g~~v~i--~~Gei~v~g~~~~~gY~~~~~~~~~~~~g~~~TGDl~~~~  245 (358)
T PRK07824        175 GINVVRTYGMSETSGGCV-------YDGVPLDGVRVRV--EDGRIALGGPTLAKGYRNPVDPDPFAEPGWFRTDDLGALD  245 (358)
T ss_pred             CCcEEecccCCccCCCcC-------cCceeCCCCEEEe--cCCEEEEecCccccccCCCcccccccCCCceecccEEEEe
Confidence            567899999999865432       2467764333111  23899988   88999998762  2245799999999998


Q ss_pred             CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         165 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       165 ~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +|++++.||.+|+|+++|++|+|.+||+.+.++|.|.++++++.++...+..+
T Consensus       246 ~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~  298 (358)
T PRK07824        246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV  298 (358)
T ss_pred             CCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEE
Confidence            89999999999999999999999999999999999999999998877665544

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.63  E-value=1.5e-15  Score=147.24  Aligned_cols=129  Identities=16%  Similarity=0.175  Sum_probs=103.8

Q ss_pred             CCCcccCCCCCcccccceEEEEe----CCCCcccccccc---------eecCCcceEEEEEe---eeccccCCcc----c
Q psy8473          89 PGESMLHADNNNEQSNDIAIVLY----TSGSTGIPKEYR---------RMYKTGDYGRIVDD---IHRCWSSGDR----A  148 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~~----tsGttG~Pkg~~---------~~~~~g~~Gel~v~---v~~gy~~~~~----~  148 (307)
                      +++.+++.||+||++..++....    ..++.|.|....         .+++.|..|||+++   ++.||+++++    .
T Consensus       351 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~  430 (557)
T PRK07059        351 TGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKV  430 (557)
T ss_pred             hCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhh
Confidence            35678999999998765443221    246778776322         14677888999998   8999999887    2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ...++||+|||++++ ++|++++.||.+++++++|++|+|.++|+.+.++|+|.++++++.++...+..+
T Consensus       431 ~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~  500 (557)
T PRK07059        431 MTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAV  500 (557)
T ss_pred             cccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeE
Confidence            234789999999999 589999999999999999999999999999999999999999988776555444

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.63  E-value=1.7e-15  Score=145.57  Aligned_cols=128  Identities=20%  Similarity=0.176  Sum_probs=102.6

Q ss_pred             CCcccCCCCCcccccceEEE----EeCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcccccccc
Q psy8473          90 GESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDRAIKYRR  153 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~~~~~~~  153 (307)
                      +..+++.||+||++......    ....++.|.|.....         +++.|..|||+++   ++.+|++.+.....++
T Consensus       317 g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g  396 (516)
T PRK13383        317 GDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGKAVVDG  396 (516)
T ss_pred             CchhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEecCcccccccCCchhheecC
Confidence            35589999999987433221    123567887764322         4667788999998   8889998776555679


Q ss_pred             EEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         154 MYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       154 ~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ||+|||++++ ++|++++.||.+++++++|++++|.+||..+.++|.|.++++++.++...+..+
T Consensus       397 ~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~  461 (516)
T PRK13383        397 MTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRL  461 (516)
T ss_pred             ceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceE
Confidence            9999999999 589999999999999999999999999999999999999999988776554444

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.63  E-value=2.3e-15  Score=146.07  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=102.2

Q ss_pred             CCcccCCCCCcccccceEEEE----eCCCCccccccc----------ceecCCcceEEEEEe---eeccccCCcc---cc
Q psy8473          90 GESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEY----------RRMYKTGDYGRIVDD---IHRCWSSGDR---AI  149 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~----------~~~~~~g~~Gel~v~---v~~gy~~~~~---~~  149 (307)
                      +..+++.||+||++...+...    ...|+.|.|...          ..+++.|..|+|+++   ++.||+++++   ..
T Consensus       348 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~  427 (563)
T PRK06710        348 GGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAV  427 (563)
T ss_pred             CCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhh
Confidence            456899999999875432211    124677777642          124677888999998   8899999877   22


Q ss_pred             ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ..++||+|||++++ ++|.+++.||.+++|+++|.+|+|.+||+.+.++|.|.++++++.++...+..+
T Consensus       428 ~~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  496 (563)
T PRK06710        428 LQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETV  496 (563)
T ss_pred             cccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCcee
Confidence            23689999999999 599999999999999999999999999999999999999999998876554444

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.63  E-value=3.2e-15  Score=144.27  Aligned_cols=121  Identities=22%  Similarity=0.301  Sum_probs=96.2

Q ss_pred             CCcccCCCCCcccccceEEEEe------CCCCccccc--cc---------ceecCCcceEEEEEe---eeccccCCcc--
Q psy8473          90 GESMLHADNNNEQSNDIAIVLY------TSGSTGIPK--EY---------RRMYKTGDYGRIVDD---IHRCWSSGDR--  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~------tsGttG~Pk--g~---------~~~~~~g~~Gel~v~---v~~gy~~~~~--  147 (307)
                      ++.+++.||+||++...+....      ..++.|.|.  ++         ..+++.|..|||+++   ++.||+++++  
T Consensus       319 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t  398 (540)
T PRK06164        319 GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDAT  398 (540)
T ss_pred             CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhh
Confidence            5668999999998754433221      122345543  11         124677889999999   8999999987  


Q ss_pred             --ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeC
Q psy8473         148 --AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKP  210 (307)
Q Consensus       148 --~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~  210 (307)
                        ....++||+|||+|++ ++|++++.||.+++++++|++++|.+||+.+.++|.|.++++++.+.
T Consensus       399 ~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~  464 (540)
T PRK06164        399 ARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR  464 (540)
T ss_pred             hhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC
Confidence              2334689999999999 59999999999999999999999999999999999999999988763

>PRK08315 AMP-binding domain protein; Validated

Probab=99.63  E-value=3.2e-15  Score=144.88  Aligned_cols=130  Identities=14%  Similarity=0.126  Sum_probs=102.9

Q ss_pred             CCCCcccCCCCCcccccceEEEEe------CCCCcccccccc----------eecCCcceEEEEEe---eeccccCCcc-
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY------TSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGDR-  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~------tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~~-  147 (307)
                      ++..++++.||+||++..++....      ..++.|.|.+..          .+++.|..|||+++   ++.||++++. 
T Consensus       339 ~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~  418 (559)
T PRK08315        339 MHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEK  418 (559)
T ss_pred             cCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhH
Confidence            334457999999998765443322      245778776322          24567888999998   8899999876 


Q ss_pred             ---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 ---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 ---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                         ....++||+|||++++ ++|.+++.||.+++++++|+++++.+||+.+..+|+|.++++++.++...+..+
T Consensus       419 ~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  492 (559)
T PRK08315        419 TAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEV  492 (559)
T ss_pred             HhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEE
Confidence               2224789999999999 599999999999999999999999999999999999999999988776544333

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.63  E-value=3.2e-15  Score=142.97  Aligned_cols=128  Identities=17%  Similarity=0.134  Sum_probs=102.9

Q ss_pred             CCcccCCCCCcccccceEEEE----eCCCCcccccccce--------ecCCcceEEEEEe---eeccccCCccc------
Q psy8473          90 GESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYRR--------MYKTGDYGRIVDD---IHRCWSSGDRA------  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~~--------~~~~g~~Gel~v~---v~~gy~~~~~~------  148 (307)
                      +..+++.||+||++..++...    ...|+.|+|.....        +++.|..|||+++   ++.||+++++.      
T Consensus       295 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~  374 (501)
T PRK13390        295 GPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLGDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQH  374 (501)
T ss_pred             CCceeeeecccccCceEEecchhhccCCCCcCCcccceEEEECCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhc
Confidence            455789999999875332211    13578888874322        4678899999998   88899998871      


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ....+|++|||++++ ++|++++.||.+++++++|++|+|.+||+.+..+|.|.++++++.++...++.+
T Consensus       375 ~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~  444 (501)
T PRK13390        375 PAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQV  444 (501)
T ss_pred             cCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCcee
Confidence            123579999999999 599999999999999999999999999999999999999999998877654443

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.63  E-value=2e-15  Score=146.78  Aligned_cols=128  Identities=17%  Similarity=0.183  Sum_probs=102.1

Q ss_pred             CCcccCCCCCcccccceEEEE----eCCCCcccccccc-----------eecCCcceEEEEEe---eeccccCCcc---c
Q psy8473          90 GESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYR-----------RMYKTGDYGRIVDD---IHRCWSSGDR---A  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~-----------~~~~~g~~Gel~v~---v~~gy~~~~~---~  148 (307)
                      +..+++.||+||++..++...    +..|+.|.|....           .+++.|..|||+++   ++.||++++.   .
T Consensus       361 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~  440 (573)
T PRK05605        361 GGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAK  440 (573)
T ss_pred             CCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhh
Confidence            456899999999875543321    2346777776311           24567788999998   8899999876   2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ....+||+|||++++ ++|++++.||.+++++++|++|+|.+||+++..++.|.++++++.++...+..+
T Consensus       441 ~~~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~  510 (573)
T PRK05605        441 SFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEV  510 (573)
T ss_pred             cccCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEE
Confidence            223569999999999 589999999999999999999999999999999999999999998876555444

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.62  E-value=1.8e-15  Score=145.23  Aligned_cols=128  Identities=19%  Similarity=0.222  Sum_probs=102.6

Q ss_pred             CCcccCCCCCcccccceEEE----EeCCCCcccccccce---------ecCCcceEEEEEe------eeccccCCcc---
Q psy8473          90 GESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD------IHRCWSSGDR---  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~------v~~gy~~~~~---  147 (307)
                      +..+++.||+||++...+..    .++.++.|.|.....         +++.|..|||+++      ++.|||++++   
T Consensus       312 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~  391 (517)
T PRK08008        312 GVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATA  391 (517)
T ss_pred             CCeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHh
Confidence            56789999999986533321    123467777753222         4677888999986      7889999987   


Q ss_pred             -ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 -AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 -~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                       ....++||+|||++++ ++|++++.||.+++++++|++|+|.+||+++..+|.|.++++++.++...+..+
T Consensus       392 ~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~  463 (517)
T PRK08008        392 KVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAI  463 (517)
T ss_pred             hcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceE
Confidence             2234689999999999 599999999999999999999999999999999999999999998877654444

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.62  E-value=2.2e-15  Score=145.70  Aligned_cols=128  Identities=14%  Similarity=0.135  Sum_probs=101.2

Q ss_pred             CCcccCCCCCcccccceEEEE--------eCCCCccccccccee---------------cCCcceEEEEEe---eecccc
Q psy8473          90 GESMLHADNNNEQSNDIAIVL--------YTSGSTGIPKEYRRM---------------YKTGDYGRIVDD---IHRCWS  143 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~--------~tsGttG~Pkg~~~~---------------~~~g~~Gel~v~---v~~gy~  143 (307)
                      +.++++.||+||++..+....        +..|+.|+|......               .+.+..|||+++   ++.|||
T Consensus       310 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~  389 (540)
T PRK05857        310 GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYW  389 (540)
T ss_pred             CCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhh
Confidence            567899999999875433221        124678888753321               123567999999   889999


Q ss_pred             CCcc---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         144 SGDR---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       144 ~~~~---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ++++   ....++||+|||++++ ++|++++.||.+++||++|++++|.+||+++..+|.|.++++++.++...+..+
T Consensus       390 ~~~~~t~~~~~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~  467 (540)
T PRK05857        390 NNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALV  467 (540)
T ss_pred             CCccchhhhcCCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccce
Confidence            9877   2234789999999999 599999999999999999999999999999999999999999988876554443

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.62  E-value=1.2e-16  Score=151.30  Aligned_cols=82  Identities=20%  Similarity=0.278  Sum_probs=68.0

Q ss_pred             EEEeee-cccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccCCCCCCCe
Q psy8473         217 SEVTSE-EIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSSAGSTDSS  292 (307)
Q Consensus       217 ~~~~~~-~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~~~~ds~  292 (307)
                      ++.++| ...++||+++|+||.||+||+.|+||.+.|||+.|.+||+|.+|+|++.+|   ++...+|++++++...+ .
T Consensus       397 ~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~-~  475 (528)
T COG0365         397 WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-E  475 (528)
T ss_pred             eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH-H
Confidence            455666 456899999999999999999999999999999999999999999999877   45566799999888555 4


Q ss_pred             eeecccc
Q psy8473         293 FIVKSRE  299 (307)
Q Consensus       293 f~~~~~~  299 (307)
                      ++.+++.
T Consensus       476 L~~ei~~  482 (528)
T COG0365         476 LAEEIRR  482 (528)
T ss_pred             HHHHHHH
Confidence            4444433

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.62  E-value=3.6e-15  Score=141.12  Aligned_cols=126  Identities=17%  Similarity=0.149  Sum_probs=98.7

Q ss_pred             CCcccCCCCCcccccceEEEEeC-CCCcccccccceecCCcceEEEEEe---eeccccCCcc---ccccccEEeecCeEE
Q psy8473          90 GESMLHADNNNEQSNDIAIVLYT-SGSTGIPKEYRRMYKTGDYGRIVDD---IHRCWSSGDR---AIKYRRMYKTGDYGR  162 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~t-sGttG~Pkg~~~~~~~g~~Gel~v~---v~~gy~~~~~---~~~~~~~~~tGD~g~  162 (307)
                      +..+++.||+||++...+..... ..+.|.|.+.... .. ..|||+++   ++.||+++++   ....++||+|||+|+
T Consensus       264 g~~~~~~YG~tE~~~~~~~~~~~~~~~~G~~~~~~~~-~i-~~gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~  341 (458)
T PRK09029        264 GIRCWCGYGLTEMASTVCAKRADGLAGVGSPLPGREV-KL-VDGEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGE  341 (458)
T ss_pred             CCcEeccccccccCcceeccCCCCCCCCCCCCCCCEE-EE-eCCEEEEecCceeeeeecCccccccccCCCccCCCCcEE
Confidence            56689999999987543322221 2346776643321 11 12899998   8999998876   223578999999999


Q ss_pred             EECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         163 IVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       163 ~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +++|++++.||.+++|+++|++|+|.+||+.+..+|.|.+++|++.++...++.+
T Consensus       342 ~~~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~  396 (458)
T PRK09029        342 WQNGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRP  396 (458)
T ss_pred             EeCCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceE
Confidence            9999999999999999999999999999999999999999999998877655544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.62  E-value=2e-15  Score=157.88  Aligned_cols=128  Identities=24%  Similarity=0.273  Sum_probs=103.2

Q ss_pred             CCcccCCCCCcccccceEEEE-------------eCCCCcccccccc----------eecCCcceEEEEEe---eecccc
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-------------YTSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWS  143 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-------------~tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~  143 (307)
                      +.++++.||+||++..++...             ...++.|+|....          .+++.|..|||+++   ++.||+
T Consensus       923 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~ 1002 (1146)
T PRK08633        923 GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYL 1002 (1146)
T ss_pred             CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCcccccc
Confidence            466899999999876554332             1356788887432          25678889999999   899999


Q ss_pred             CCccc---c----ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCC--CcceEEEEEeeCCCc
Q psy8473         144 SGDRA---I----KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLS--EVDKLSVLCYKPGEV  213 (307)
Q Consensus       144 ~~~~~---~----~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p--~V~~~~v~~~~~~~~  213 (307)
                      ++++.   .    ..++||+|||++++ +||++++.||.+|++|++|++|+|.|||+.+.++|  .+.++++++.+++..
T Consensus      1003 ~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~ 1082 (1146)
T PRK08633       1003 GDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKK 1082 (1146)
T ss_pred             CCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCC
Confidence            99871   1    12389999999999 59999999999999999999999999999999998  456788888888766


Q ss_pred             ceEE
Q psy8473         214 DQVS  217 (307)
Q Consensus       214 ~~~~  217 (307)
                      ++.+
T Consensus      1083 g~~~ 1086 (1146)
T PRK08633       1083 GEKL 1086 (1146)
T ss_pred             CcEE
Confidence            6554

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.62  E-value=5.4e-15  Score=144.65  Aligned_cols=123  Identities=20%  Similarity=0.177  Sum_probs=93.3

Q ss_pred             CCCCcccCCCCCcccccceEEEEeCCCCcccccc------------------------cceecCCcceEEEEE--e---e
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYTSGSTGIPKE------------------------YRRMYKTGDYGRIVD--D---I  138 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~tsGttG~Pkg------------------------~~~~~~~g~~Gel~v--~---v  138 (307)
                      ++...+++.||+||++..........++.|.+-.                        ...+++.|..|++++  .   +
T Consensus       336 ~~~~~l~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~  415 (600)
T PRK08279        336 FGIPRILEFYAASEGNVGFINVFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGP  415 (600)
T ss_pred             hCcceeeeeecccccceeecccCCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccc
Confidence            3444579999999986433222223455554222                        112467788899984  3   8


Q ss_pred             eccccCCccc----------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEE
Q psy8473         139 HRCWSSGDRA----------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLC  207 (307)
Q Consensus       139 ~~gy~~~~~~----------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~  207 (307)
                      +.|| +++..          ...++||+|||+|++ ++|++++.||.+++||++|++|+|.|||+.+.++|+|.++++++
T Consensus       416 ~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~g  494 (600)
T PRK08279        416 FDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYG  494 (600)
T ss_pred             cccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEE
Confidence            8999 66651          124689999999999 49999999999999999999999999999999999999999988


Q ss_pred             eeCC
Q psy8473         208 YKPG  211 (307)
Q Consensus       208 ~~~~  211 (307)
                      .+++
T Consensus       495 v~~~  498 (600)
T PRK08279        495 VEVP  498 (600)
T ss_pred             eecC
Confidence            8754

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.62  E-value=3.5e-15  Score=144.20  Aligned_cols=128  Identities=20%  Similarity=0.257  Sum_probs=101.5

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCcccccccc----------eecCCcceEEEEEe---eeccccCCccc-----
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGDRA-----  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~~~-----  148 (307)
                      +.++++.||+||++...++..   ...++.|.|....          .+++.|..|||+++   ++.||+++++.     
T Consensus       330 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f  409 (546)
T PRK08314        330 GLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAF  409 (546)
T ss_pred             CCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhh
Confidence            456899999999875543321   2346778776422          24566778999998   89999998761     


Q ss_pred             --cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 --IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 --~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                        ....+||+|||++++ ++|++++.||.+++++++|++|+|.+||+.+.++|+|.++++++.++...+..+
T Consensus       410 ~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~  481 (546)
T PRK08314        410 IEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETV  481 (546)
T ss_pred             hhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCcee
Confidence              123469999999999 589999999999999999999999999999999999999999988776554444

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.61  E-value=2.5e-15  Score=144.11  Aligned_cols=130  Identities=20%  Similarity=0.265  Sum_probs=105.8

Q ss_pred             CCCCcccCCCCCcccccceEEE-----EeCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc---
Q psy8473          88 IPGESMLHADNNNEQSNDIAIV-----LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR---  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~-----~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~---  147 (307)
                      +++..+++.||+||++...+..     .+..++.|+|.....         +++.|..|||+++   ++.+|+++++   
T Consensus       310 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~  389 (523)
T PRK08316        310 LPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTA  389 (523)
T ss_pred             cCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEECCchhhhhcCCHHHHH
Confidence            5677799999999987644332     123577888875332         4667888999998   8899998876   


Q ss_pred             ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 ~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ....++||+|||+|++ ++|.+++.||.+++++++|.+++|.+||+.+.+++.|.++++++.+++..+..+
T Consensus       390 ~~~~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~  460 (523)
T PRK08316        390 EAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAV  460 (523)
T ss_pred             HHhhCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeE
Confidence            2234789999999999 599999999999999999999999999999999999999999988777554444

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.61  E-value=2.8e-15  Score=144.36  Aligned_cols=126  Identities=18%  Similarity=0.250  Sum_probs=101.4

Q ss_pred             CCcccCCCCCcccccceEEEE-----------eCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCc
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-----------YTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGD  146 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-----------~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~  146 (307)
                      +..+++.||+||++..++...           ..-|+.|.|.....         +++.|..|||+++   ++.||++++
T Consensus       305 g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~  384 (528)
T PRK07470        305 GKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNP  384 (528)
T ss_pred             CcHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhcCCH
Confidence            355789999999876544321           12356777764322         5677888999998   899999987


Q ss_pred             c---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         147 R---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       147 ~---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                      +   ....++||+|||++++ ++|++++.||.+++++++|++++|.+||..+..+|.|.++++++.++...+.
T Consensus       385 ~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~  457 (528)
T PRK07470        385 EANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGE  457 (528)
T ss_pred             HHHHhhhcCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCc
Confidence            7   2234789999999999 5999999999999999999999999999999999999999999887765443

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.61  E-value=4.2e-15  Score=142.24  Aligned_cols=125  Identities=20%  Similarity=0.242  Sum_probs=101.6

Q ss_pred             cccCCCCCcccccceEEEEe------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc----cc
Q psy8473          92 SMLHADNNNEQSNDIAIVLY------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR----AI  149 (307)
Q Consensus        92 ~~~~~yg~te~~~~~a~~~~------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~----~~  149 (307)
                      .+++.||+||++...+....      +.++.|.|.....         +++.|..|||+++   ++.||++++.    ..
T Consensus       309 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  388 (513)
T PRK07656        309 IVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAI  388 (513)
T ss_pred             ceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhh
Confidence            58999999999765544321      2577888774322         4667788999998   8899999876    22


Q ss_pred             ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473         150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV  216 (307)
Q Consensus       150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~  216 (307)
                      ..++||+|||++++ ++|.+++.||.+++++++|.++++.+||+.+.++++|.++++++.++...+..
T Consensus       389 ~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~  456 (513)
T PRK07656        389 DADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEV  456 (513)
T ss_pred             ccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCce
Confidence            23789999999999 59999999999999999999999999999999999999999998876654443

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.61  E-value=5.8e-15  Score=141.51  Aligned_cols=128  Identities=20%  Similarity=0.235  Sum_probs=101.6

Q ss_pred             CCcccCCCCCcccccceEEE----EeCCCCcccccccc---------eecCCcceEEEEEe---ee-ccccCCcc---cc
Q psy8473          90 GESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYR---------RMYKTGDYGRIVDD---IH-RCWSSGDR---AI  149 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~---------~~~~~g~~Gel~v~---v~-~gy~~~~~---~~  149 (307)
                      +..+++.||+||++..+...    ....|+.|.|....         .+++.|..|||+++   ++ .+|+++++   ..
T Consensus       296 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~  375 (509)
T PRK12406        296 GPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEI  375 (509)
T ss_pred             CCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEECCccccccccCCchhcccc
Confidence            45689999999987643322    12357888887432         24677888999998   44 38888776   33


Q ss_pred             ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ..++||+|||++++ ++|.+++.||.++++|++|++|++.+||+.+.++|.|.++++++.++...+..+
T Consensus       376 ~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~  444 (509)
T PRK12406        376 DRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEAL  444 (509)
T ss_pred             cCCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCcee
Confidence            45789999999999 599999999999999999999999999999999999999999988776544443

>KOG1176|consensus

Probab=99.61  E-value=5.5e-17  Score=154.13  Aligned_cols=119  Identities=17%  Similarity=0.070  Sum_probs=91.5

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeC---CCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKP---GEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA  256 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~---~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~  256 (307)
                      .|....+.+.++++.+.+.+...+.-....   ...+..++-++|. +.++||++++++|.+|+||.+|++|+|.|||++
T Consensus       370 ~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~v  449 (537)
T KOG1176|consen  370 TGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAV  449 (537)
T ss_pred             CCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHH
Confidence            477778888888888888887765432211   1112256667775 679999999999999999999999999999999


Q ss_pred             Hcccccccccccccccc---ccccceEEeccCCCCCCCeeeeccccchh
Q psy8473         257 LSKISEVDKLSVLCYKP---GEVDQIWEAPSSAGSTDSSFIVKSREDRA  302 (307)
Q Consensus       257 L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~~~~ds~f~~~~~~~~~  302 (307)
                      |..||+|.+|+|++.+|   |+..++||+.+.+..++   +.++.++++
T Consensus       450 L~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lt---e~di~~~v~  495 (537)
T KOG1176|consen  450 LLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLT---EKDIIEYVR  495 (537)
T ss_pred             HHhCCCccEEEEEcccccccCCcceEEEEecCCCcCC---HHHHHHHHH
Confidence            99999999999999887   66777899988755433   445554443

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.61  E-value=9.9e-15  Score=139.33  Aligned_cols=128  Identities=25%  Similarity=0.405  Sum_probs=101.4

Q ss_pred             CCCCcccCCCCCcccccceEEEEe--------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY--------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~--------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      +++..+++.||+||++...+....        ..++.|.|+....         +++.|..|||+++   ++.||+++++
T Consensus       284 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~  363 (503)
T PRK04813        284 FPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPE  363 (503)
T ss_pred             CCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEeccccccccCCChh
Confidence            567789999999998755444332        2234666654221         4667888999998   8999999887


Q ss_pred             c-------cccccEEeecCeEEEECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         148 A-------IKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       148 ~-------~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                      .       ....+||+|||++++.+|++++.||.+++++++|++++|.++|+.+.++|.|.++++++.++.....
T Consensus       364 ~~~~~~~~~~g~~~~~tGD~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  438 (503)
T PRK04813        364 KTAEAFFTFDGQPAYHTGDAGYLEDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQ  438 (503)
T ss_pred             HhHHhhccCCCceeEECCceEEeeCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCcc
Confidence            1       1234699999999998899999999999999999999999999999999999999999876554433

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.60  E-value=6.5e-15  Score=139.92  Aligned_cols=128  Identities=19%  Similarity=0.225  Sum_probs=98.8

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCcccccccce---------ecC-Cc-ceEEEEEe---eeccccCCcc----c
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR---------MYK-TG-DYGRIVDD---IHRCWSSGDR----A  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~---------~~~-~g-~~Gel~v~---v~~gy~~~~~----~  148 (307)
                      +..+++.||+||++...+...   ...++.|.|.....         +++ .+ ..|||+++   ++.||+++++    .
T Consensus       266 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~  345 (471)
T PRK07787        266 GHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAA  345 (471)
T ss_pred             CCCeecccCccccCcceecCCCCcccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhc
Confidence            456899999999875332221   12456777763222         222 22 36999998   8899999877    2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeec-CCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRT-DSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~-~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ...++||+|||++++ ++|++++.||. +++++.+|.+++|.+||+.+..++.|.++++++.++...+..+
T Consensus       346 ~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  416 (471)
T PRK07787        346 FTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRI  416 (471)
T ss_pred             ccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEE
Confidence            223689999999999 59999999996 8899999999999999999999999999999988776655544

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.60  E-value=5.7e-15  Score=141.17  Aligned_cols=126  Identities=19%  Similarity=0.252  Sum_probs=99.2

Q ss_pred             CCcccCCCCCcccccceEEE---EeCCCCcccccccc----------eecCCcceEEEEEe---eeccccCCcc----cc
Q psy8473          90 GESMLHADNNNEQSNDIAIV---LYTSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGDR----AI  149 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~---~~tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~~----~~  149 (307)
                      +..+++.||+||++......   ....++.|.|....          .+++.|..|||+++   ++.||+++++    ..
T Consensus       294 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~  373 (504)
T PRK07514        294 GHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEF  373 (504)
T ss_pred             CCcceeecccccccccccCCccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhc
Confidence            45689999999986432211   11235667666322          14667788999998   8999999887    22


Q ss_pred             ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                      ..++||+|||++++ ++|++++.||.+++|+++|++++|.+||+.+..+++|.++++++.++...+.
T Consensus       374 ~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~  440 (504)
T PRK07514        374 RADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGE  440 (504)
T ss_pred             ccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCc
Confidence            23679999999999 5899999999999999999999999999999999999999999887665443

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.60  E-value=5e-15  Score=144.39  Aligned_cols=128  Identities=19%  Similarity=0.196  Sum_probs=96.9

Q ss_pred             CCcccCCCCCcccccceEEEE-----------------eCCCCccccccc--------ceecCC--cceEEEEEe---ee
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-----------------YTSGSTGIPKEY--------RRMYKT--GDYGRIVDD---IH  139 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-----------------~tsGttG~Pkg~--------~~~~~~--g~~Gel~v~---v~  139 (307)
                      +.++++.||+||++...+...                 ...|+.+.|...        ..+++.  +..|||+++   ++
T Consensus       324 g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~  403 (579)
T PLN03102        324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIM  403 (579)
T ss_pred             CCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEECcchh
Confidence            466899999999875332211                 112333333211        112332  356999998   89


Q ss_pred             ccccCCcc---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         140 RCWSSGDR---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       140 ~gy~~~~~---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                      .|||++++   ....++||+|||+|++ ++|++++.||.+++|+++|++|+|.+||.++.++|.|.+++|++.+++..+.
T Consensus       404 ~GY~~~~~~t~~~f~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~  483 (579)
T PLN03102        404 KGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGE  483 (579)
T ss_pred             hhhcCChhhhHhhhccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccc
Confidence            99999887   2234689999999999 5999999999999999999999999999999999999999999998876544


Q ss_pred             EE
Q psy8473         216 VS  217 (307)
Q Consensus       216 ~~  217 (307)
                      ..
T Consensus       484 ~~  485 (579)
T PLN03102        484 TP  485 (579)
T ss_pred             ee
Confidence            43

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.59  E-value=9.8e-15  Score=142.14  Aligned_cols=86  Identities=16%  Similarity=0.239  Sum_probs=74.4

Q ss_pred             ecCCcceEEEEEe---eeccccCCcccc---------------ccccEEeecCeEEEECCeEEEeeecCCeEEECCeeec
Q psy8473         125 MYKTGDYGRIVDD---IHRCWSSGDRAI---------------KYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVD  186 (307)
Q Consensus       125 ~~~~g~~Gel~v~---v~~gy~~~~~~~---------------~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~  186 (307)
                      +++.|..|||+++   ++.||+++++..               ..++||+|||++++++|++++.||.+++|+++|++|+
T Consensus       391 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~~G~l~~~GR~~d~i~~~G~~i~  470 (578)
T PRK05850        391 ECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFISEGELFIVGRIKDLLIVDGRNHY  470 (578)
T ss_pred             CCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEECCEEEEEcccccEEEECCeecC
Confidence            5677889999999   899999988711               0247999999999899999999999999999999999


Q ss_pred             hhHHHHHHhcCCCcceEEEEEeeCC
Q psy8473         187 LSEVEAALSKLSEVDKLSVLCYKPG  211 (307)
Q Consensus       187 ~~eiE~~l~~~p~V~~~~v~~~~~~  211 (307)
                      |.|||+++.++|.+. +++++.++.
T Consensus       471 p~eIE~~l~~~~~~~-~~v~~v~~~  494 (578)
T PRK05850        471 PDDIEATIQEITGGR-VAAISVPDD  494 (578)
T ss_pred             HHHHHHHHHHhcCCc-EEEEEecCC
Confidence            999999999999864 667777765

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.59  E-value=3.6e-15  Score=146.39  Aligned_cols=124  Identities=17%  Similarity=0.240  Sum_probs=97.0

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCcccccccce--ecCCcceEEEEEe---eeccccCCcc----ccccccEEee
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR--MYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKT  157 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~--~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~t  157 (307)
                      +..+++.||+||++..++...   ...|+.|+|.....  .++.+..|||+++   ++.|||++++    ....++||+|
T Consensus       365 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~T  444 (614)
T PRK08180        365 RIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS  444 (614)
T ss_pred             CceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEecCCCCcEEEEecCccchhhcCChhHhHhhcccCCceec
Confidence            356899999999876544322   23578898875433  3445667999999   8999999987    2234789999


Q ss_pred             cCeEEEE-----CCeEEEeeecCCeEEE-CCeeec--hhHHHHHHhcCCCcceEEEEEeeCCCc
Q psy8473         158 GDYGRIV-----DDILLYEGRTDSQVKI-RGNRVD--LSEVEAALSKLSEVDKLSVLCYKPGEV  213 (307)
Q Consensus       158 GD~g~~~-----~g~l~~~GR~~~~i~~-~G~~v~--~~eiE~~l~~~p~V~~~~v~~~~~~~~  213 (307)
                      ||+|+++     +|+++++||.++++++ +|++++  |.|+|..+..+|.|.+++|++.+++..
T Consensus       445 GDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~~  508 (614)
T PRK08180        445 GDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDEI  508 (614)
T ss_pred             cceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCce
Confidence            9999992     6899999999988875 798766  678888889999999999999877643

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.59  E-value=6.9e-15  Score=139.88  Aligned_cols=126  Identities=20%  Similarity=0.238  Sum_probs=102.2

Q ss_pred             CCcccCCCCCcccccceEEE-----EeCCCCcccccccce--------ecCCcceEEEEEe---eeccccCCcc---ccc
Q psy8473          90 GESMLHADNNNEQSNDIAIV-----LYTSGSTGIPKEYRR--------MYKTGDYGRIVDD---IHRCWSSGDR---AIK  150 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~-----~~tsGttG~Pkg~~~--------~~~~g~~Gel~v~---v~~gy~~~~~---~~~  150 (307)
                      ++++++.||+||++..++..     ....|+.|.|.....        +++.|..|||+++   ++.||+++++   ...
T Consensus       278 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~  357 (483)
T PRK03640        278 GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF  357 (483)
T ss_pred             CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecCCCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH
Confidence            56689999999976543322     224588888885332        4667788999999   8999999887   222


Q ss_pred             cccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         151 YRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       151 ~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                      .++||+|||++++ ++|++++.||.+++++.+|++|++.+||+.+..++.|.++++++.++...+.
T Consensus       358 ~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~  423 (483)
T PRK03640        358 QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQ  423 (483)
T ss_pred             hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCC
Confidence            4689999999999 5999999999999999999999999999999999999999988876654443

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.59  E-value=8.7e-15  Score=140.21  Aligned_cols=130  Identities=18%  Similarity=0.169  Sum_probs=102.9

Q ss_pred             CCCCcccCCCCCcccccceEEE----EeCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcccc--
Q psy8473          88 IPGESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDRAI--  149 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~~~--  149 (307)
                      +++..+++.||+||+.......    ....++.|+|...+.         +++.+..|+++++   ++.|||++++..  
T Consensus       298 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~  377 (515)
T TIGR03098       298 LPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAE  377 (515)
T ss_pred             CCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcCchhhccccCCchhhhh
Confidence            5567789999999986432211    124678888874333         3556788999998   889999987510  


Q ss_pred             -------------ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         150 -------------KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       150 -------------~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                                   ...+||+|||++++ .+|++++.||.+++++.+|++++|.+||+.+..+|.|.++++++.++...+.
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~  457 (515)
T TIGR03098       378 RFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQ  457 (515)
T ss_pred             hhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCc
Confidence                         11358999999999 5899999999999999999999999999999999999999999988776555


Q ss_pred             EE
Q psy8473         216 VS  217 (307)
Q Consensus       216 ~~  217 (307)
                      .+
T Consensus       458 ~~  459 (515)
T TIGR03098       458 AI  459 (515)
T ss_pred             eE
Confidence            54

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.59  E-value=8e-15  Score=153.38  Aligned_cols=128  Identities=18%  Similarity=0.184  Sum_probs=103.3

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCcccccccce----ecC-CcceEEEEEe---eeccccCCcc----ccccccE
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR----MYK-TGDYGRIVDD---IHRCWSSGDR----AIKYRRM  154 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~----~~~-~g~~Gel~v~---v~~gy~~~~~----~~~~~~~  154 (307)
                      +.++++.||+||++..++...   ...++.|+|.....    +.+ .+..|||+++   ++.||++++.    ....++|
T Consensus       932 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~ 1011 (1140)
T PRK06814        932 GIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGIDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGW 1011 (1140)
T ss_pred             CCcEEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecCCCCCceEEEEeCCCcchhhcCCCCCCccccCCCCe
Confidence            566899999999876554432   23578888875443    222 3567999999   8999998755    1234789


Q ss_pred             EeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         155 YKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       155 ~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      |+|||++++ +||++++.||.||++|++|++|+|.|||+.+.+++.+.++++++.+++..++.+
T Consensus      1012 ~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~ 1075 (1140)
T PRK06814       1012 YDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERI 1075 (1140)
T ss_pred             EecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceE
Confidence            999999999 599999999999999999999999999999999999999999998877665544

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.58  E-value=8.9e-15  Score=141.26  Aligned_cols=128  Identities=18%  Similarity=0.237  Sum_probs=101.8

Q ss_pred             CCcccCCCCCcccccceEEE----EeCCCCcccccc--c--------ceecCCcceEEEEEe---eeccccCCcc----c
Q psy8473          90 GESMLHADNNNEQSNDIAIV----LYTSGSTGIPKE--Y--------RRMYKTGDYGRIVDD---IHRCWSSGDR----A  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg--~--------~~~~~~g~~Gel~v~---v~~gy~~~~~----~  148 (307)
                      ++++++.||+||+.......    ....++.|.|..  +        ..+++.|..|+|+++   ++.||+++++    .
T Consensus       325 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~  404 (536)
T PRK10946        325 GCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASA  404 (536)
T ss_pred             CCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEecCccchhhcCCcccchhh
Confidence            56789999999964222111    112367788762  1        235778889999998   9999999887    2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ...++||+|||++++ .+|++++.||.+++++++|++++|.+||+.+.++|+|.++++++.++...+...
T Consensus       405 ~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  474 (536)
T PRK10946        405 FDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKS  474 (536)
T ss_pred             cccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceE
Confidence            234689999999999 599999999999999999999999999999999999999999988876554433

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.58  E-value=1.4e-14  Score=140.75  Aligned_cols=121  Identities=24%  Similarity=0.218  Sum_probs=95.8

Q ss_pred             CCCCCcccccceEEEE----------eCCCCcccccccce----------ecCCcceEEEEEe---eeccccCCcc---c
Q psy8473          95 HADNNNEQSNDIAIVL----------YTSGSTGIPKEYRR----------MYKTGDYGRIVDD---IHRCWSSGDR---A  148 (307)
Q Consensus        95 ~~yg~te~~~~~a~~~----------~tsGttG~Pkg~~~----------~~~~g~~Gel~v~---v~~gy~~~~~---~  148 (307)
                      +.||+||++...+...          ...++.|.|.....          +++.|..|||+++   ++.||+++++   .
T Consensus       358 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~  437 (567)
T PRK06178        358 AAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAE  437 (567)
T ss_pred             cccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhh
Confidence            5799999864433211          12355777764222          4567788999998   8999999987   2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                      ...++||+|||++++ ++|+++++||.+++++++|++++|.+||+.+..++.|.++++++.++...+.
T Consensus       438 ~~~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~  505 (567)
T PRK06178        438 ALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQ  505 (567)
T ss_pred             cccCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCc
Confidence            223689999999999 5899999999999999999999999999999999999999999887665443

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.58  E-value=1.7e-14  Score=139.91  Aligned_cols=129  Identities=17%  Similarity=0.196  Sum_probs=103.5

Q ss_pred             CCCcccCCCCCcccccceEEEE----eCCCCcccccccc---------eecCCcceEEEEEe---eeccccCCcc---cc
Q psy8473          89 PGESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYR---------RMYKTGDYGRIVDD---IHRCWSSGDR---AI  149 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~---------~~~~~g~~Gel~v~---v~~gy~~~~~---~~  149 (307)
                      ++..+++.||+||++...+...    ...++.|.|....         .+++.|..|||+++   ++.||+++++   ..
T Consensus       349 ~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~  428 (560)
T PRK08974        349 TGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEV  428 (560)
T ss_pred             hCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCCceEEEEecCCcchhhcCChhhhhhh
Confidence            3567899999999876544322    1246777776321         14677888999998   8899999876   12


Q ss_pred             ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ..++||+|||++++ ++|++++.||.+++++++|.+++|.+||+.+.++|.|.++++++.++...+..+
T Consensus       429 ~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~  497 (560)
T PRK08974        429 IKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAV  497 (560)
T ss_pred             hhcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEE
Confidence            24689999999999 589999999999999999999999999999999999999999988877655544

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.57  E-value=1.3e-14  Score=140.11  Aligned_cols=127  Identities=16%  Similarity=0.150  Sum_probs=98.2

Q ss_pred             CCcccCCCCCcccccceEEEEeC--------------CCCcccccccce---------ecCC--cceEEEEEe---eecc
Q psy8473          90 GESMLHADNNNEQSNDIAIVLYT--------------SGSTGIPKEYRR---------MYKT--GDYGRIVDD---IHRC  141 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~t--------------sGttG~Pkg~~~---------~~~~--g~~Gel~v~---v~~g  141 (307)
                      +..+++.||+||++...+.....              -++.|.|.....         +++.  +..|||+++   ++.|
T Consensus       318 ~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~g  397 (539)
T PRK07008        318 GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDR  397 (539)
T ss_pred             CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchh
Confidence            45689999999987543322100              135666653211         2332  246999999   8899


Q ss_pred             ccCCccccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473         142 WSSGDRAIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV  216 (307)
Q Consensus       142 y~~~~~~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~  216 (307)
                      |++++.....++||+|||++++ ++|++++.||.+++++.+|++|+|.+||+.+..+|.|.++++++.++...+..
T Consensus       398 y~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~  473 (539)
T PRK07008        398 YFRGDASPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDER  473 (539)
T ss_pred             hcCChhhhhcCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccc
Confidence            9998764444789999999999 59999999999999999999999999999999999999999999887654443

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.57  E-value=2.8e-14  Score=137.96  Aligned_cols=129  Identities=18%  Similarity=0.206  Sum_probs=104.7

Q ss_pred             CCCCCcccCCCCCcccccceEEEE-----eCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc--
Q psy8473          87 NIPGESMLHADNNNEQSNDIAIVL-----YTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR--  147 (307)
Q Consensus        87 ~~~~~~~~~~yg~te~~~~~a~~~-----~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~--  147 (307)
                      .+++..+++.||+||++...+...     ...++.|.|.....         +++.|..|||+++   ++.||+++++  
T Consensus       313 ~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~  392 (542)
T PRK07786        313 TFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEAT  392 (542)
T ss_pred             HcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCceEEEEEChhhhhhhcCCHHHH
Confidence            356788999999999876544322     23467788874322         4677888999998   8999999887  


Q ss_pred             -ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         148 -AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       148 -~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                       ....++||+|||++++ ++|.+++.||.+++++++|+++++.+||+++..+|.|.++++++.++...+.
T Consensus       393 ~~~f~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~  462 (542)
T PRK07786        393 AEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGE  462 (542)
T ss_pred             HHHhhCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCc
Confidence             2223689999999999 5999999999999999999999999999999999999999999887665444

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.57  E-value=1.6e-14  Score=139.51  Aligned_cols=128  Identities=16%  Similarity=0.136  Sum_probs=102.1

Q ss_pred             CCcccCCCCCcccccceEEEE----eCCCCcccccccce-----------ecCCcceEEEEEe---eeccccCCcc---c
Q psy8473          90 GESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYRR-----------MYKTGDYGRIVDD---IHRCWSSGDR---A  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~~-----------~~~~g~~Gel~v~---v~~gy~~~~~---~  148 (307)
                      +..+++.||+||++...+...    ...++.|.|.....           +++.|..|||+++   ++.||+++++   .
T Consensus       337 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~  416 (541)
T TIGR03205       337 GLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAE  416 (541)
T ss_pred             CCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHh
Confidence            466899999999876544321    23467777763221           3556788999998   8999999876   2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ....+||+|||++++ ++|+++++||.+++++++|++++|.+||+.+.+++.|.++++++.++...+..+
T Consensus       417 ~~~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  486 (541)
T TIGR03205       417 AFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAA  486 (541)
T ss_pred             hhccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceE
Confidence            223679999999999 599999999999999999999999999999999999999999988876554433

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.56  E-value=3.1e-14  Score=142.08  Aligned_cols=124  Identities=13%  Similarity=0.117  Sum_probs=91.6

Q ss_pred             CcccCCCCCcccccceEEE----EeCCCCcccccccce---------ecCCcc--eEEEEEe--ee---ccccCCcc---
Q psy8473          91 ESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYRR---------MYKTGD--YGRIVDD--IH---RCWSSGDR---  147 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~~---------~~~~g~--~Gel~v~--v~---~gy~~~~~---  147 (307)
                      ..+++.||+||++...+..    ....|+.|.|...+.         +++.|.  .|||+++  .+   .+|+++..   
T Consensus       498 ~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~~~~  577 (728)
T PLN03052        498 KPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKV  577 (728)
T ss_pred             CCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccCchhhhh
Confidence            3478999999986432211    123577888763222         456664  5999997  22   34444332   


Q ss_pred             ------ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHh-cCCCcceEEEEEeeCCCcc
Q psy8473         148 ------AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALS-KLSEVDKLSVLCYKPGEVD  214 (307)
Q Consensus       148 ------~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~-~~p~V~~~~v~~~~~~~~~  214 (307)
                            .....+||+|||++++ ++|+++++||.|++||++|++|++.|||+++. .+|.|.+++|++.+++..+
T Consensus       578 yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g  652 (728)
T PLN03052        578 YFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGG  652 (728)
T ss_pred             hhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCC
Confidence                  1112348999999999 59999999999999999999999999999985 7899999999999887553

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.56  E-value=2.1e-14  Score=137.27  Aligned_cols=128  Identities=18%  Similarity=0.185  Sum_probs=102.1

Q ss_pred             CCcccCCCCCcccccceEEE----EeCCCCcccccccc--------eecCCcceEEEEEe---eeccccCCcc----ccc
Q psy8473          90 GESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYR--------RMYKTGDYGRIVDD---IHRCWSSGDR----AIK  150 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~--------~~~~~g~~Gel~v~---v~~gy~~~~~----~~~  150 (307)
                      +..+++.||+||++..+...    ....|+.|.|.++.        .+++.|..|||+++   ++.||+++++    ...
T Consensus       287 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  366 (502)
T PRK08276        287 GPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAVLGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARN  366 (502)
T ss_pred             CcHhhhhcccccccceeEecCccccccCCCcceecccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhc
Confidence            34578999999987643321    12356788887331        14667888999999   7889999877    222


Q ss_pred             cccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         151 YRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       151 ~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .++||+|||++++ ++|.+++.||.+++++++|.++++.+||..+.++|.|.++++++..+...++.+
T Consensus       367 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~  434 (502)
T PRK08276        367 PHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERV  434 (502)
T ss_pred             CCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceE
Confidence            3489999999999 599999999999999999999999999999999999999999988776555444

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.55  E-value=3.7e-14  Score=136.04  Aligned_cols=128  Identities=17%  Similarity=0.092  Sum_probs=101.7

Q ss_pred             CCcccCCCCCcccccceEEE----EeCCCCcccccccce--------ecCCcceEEEEEe--eeccccCCcc----ccc-
Q psy8473          90 GESMLHADNNNEQSNDIAIV----LYTSGSTGIPKEYRR--------MYKTGDYGRIVDD--IHRCWSSGDR----AIK-  150 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~----~~tsGttG~Pkg~~~--------~~~~g~~Gel~v~--v~~gy~~~~~----~~~-  150 (307)
                      +..+++.||+||++..+.+.    ....|+.|.|.....        +++.|..|||+++  ++.+|+++++    ... 
T Consensus       300 g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g~~~i~d~~~~~~~~g~~Gel~~~g~~~~gy~~~~~~~~~~~~~  379 (511)
T PRK13391        300 GPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFGDLHILDDDGAELPPGEPGTIWFEGGRPFEYLNDPAKTAEARHP  379 (511)
T ss_pred             CCceeeeeccccccceEEecCccccccCCCcCCcccceEEEECCCCCCCCCCCceEEEEecCcceEEcCChhHhHHhhcc
Confidence            45589999999987644322    123577887764211        4567888999999  7889999876    111 


Q ss_pred             cccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         151 YRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       151 ~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .++||+|||++++ ++|.+++.||.+++++.+|.++++.+||+++.++|.|.++++++.++...+..+
T Consensus       380 ~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~  447 (511)
T PRK13391        380 DGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEV  447 (511)
T ss_pred             CCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCcee
Confidence            2489999999999 599999999999999999999999999999999999999999988776554443

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.54  E-value=3.6e-14  Score=136.49  Aligned_cols=127  Identities=18%  Similarity=0.143  Sum_probs=102.1

Q ss_pred             CcccCCCCCcccccceEEEE---------eCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc--
Q psy8473          91 ESMLHADNNNEQSNDIAIVL---------YTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR--  147 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~~---------~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~--  147 (307)
                      ..+++.||+||++..+++..         ...++.|+|.....         +++.|..|+|+++   ++.||++++.  
T Consensus       307 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~  386 (524)
T PRK06188        307 PIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEET  386 (524)
T ss_pred             chhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEEEECcchhhhhcCChHHh
Confidence            45789999999865554431         23466787774322         4677888999999   8899999876  


Q ss_pred             -ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 -AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 -~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                       ....++||+|||++++ ++|++++.||.+++++++|++++|.+||+++.+++.|.++++++.++...+..+
T Consensus       387 ~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~  458 (524)
T PRK06188        387 AEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAV  458 (524)
T ss_pred             hhhhcCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceE
Confidence             2234689999999999 599999999999999999999999999999999999999999988766544433

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.53  E-value=3.9e-14  Score=131.54  Aligned_cols=118  Identities=31%  Similarity=0.397  Sum_probs=93.3

Q ss_pred             CCCCcccCCCCCcccccceEEEEeC--------CCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYT--------SGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~t--------sGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      +++..+++.||+||++..+++....        .++.|.|...+.         +++.|..|||+++   ++.||+++++
T Consensus       258 ~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~  337 (408)
T TIGR01733       258 GPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPE  337 (408)
T ss_pred             CCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCCCCCCCCCCceEEEecCccccccccCChh
Confidence            4456789999999998766544332        445676664432         4567788999998   8999999776


Q ss_pred             c----------cccc--cEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEE
Q psy8473         148 A----------IKYR--RMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSV  205 (307)
Q Consensus       148 ~----------~~~~--~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v  205 (307)
                      .          ...+  .||+|||+++++ +|++++.||.+++++++|++++|.++|+.+..++.|.+++|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       338 LTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             hhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            1          0111  299999999995 89999999999999999999999999999999999988754

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.52  E-value=2.7e-14  Score=138.09  Aligned_cols=128  Identities=17%  Similarity=0.222  Sum_probs=101.9

Q ss_pred             CCcccCCCCCcccccceEEEE-----eCCCCcccccccc---------eecCCcceEEEEEe---eeccccCCcc----c
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-----YTSGSTGIPKEYR---------RMYKTGDYGRIVDD---IHRCWSSGDR----A  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-----~tsGttG~Pkg~~---------~~~~~g~~Gel~v~---v~~gy~~~~~----~  148 (307)
                      ++++++.||+||++...+...     +..++.|.|....         .+++.|..|||+++   ++.||+++++    .
T Consensus       326 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~  405 (547)
T PRK06087        326 GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARA  405 (547)
T ss_pred             CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEecccccccccCCHHHHHHH
Confidence            567899999999875433221     1224556665322         14678888999998   8999999887    2


Q ss_pred             cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ...++||+|||++++ .+|++++.||.+++|+.+|++++|.+||+.+..+|.|.++++++.++...+..+
T Consensus       406 ~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~  475 (547)
T PRK06087        406 LDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERS  475 (547)
T ss_pred             hCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceE
Confidence            234689999999999 599999999999999999999999999999999999999999988777655444

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.52  E-value=1e-13  Score=133.99  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=95.6

Q ss_pred             CCcccCCCCCcccccceEEEE--------------eCCCCcccccccc-----------eecCC-c-ceEEEEEe---ee
Q psy8473          90 GESMLHADNNNEQSNDIAIVL--------------YTSGSTGIPKEYR-----------RMYKT-G-DYGRIVDD---IH  139 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~--------------~tsGttG~Pkg~~-----------~~~~~-g-~~Gel~v~---v~  139 (307)
                      +..+++.||+||++...+...              ...++.|.|....           .+++. | ..|||+++   ++
T Consensus       320 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~  399 (545)
T PRK08162        320 GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVM  399 (545)
T ss_pred             CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcch
Confidence            456899999999753322211              0123445443211           12332 2 35999999   88


Q ss_pred             ccccCCcc---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         140 RCWSSGDR---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       140 ~gy~~~~~---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                      .||+++++   ....++||+|||++++ ++|++++.||.+++++++|.+++|.+||+.+..+|.|.++++++.++...+.
T Consensus       400 ~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~  479 (545)
T PRK08162        400 KGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGE  479 (545)
T ss_pred             hhhcCChhhhHHHhhCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCc
Confidence            99999887   2234689999999999 5999999999999999999999999999999999999999999887665444


Q ss_pred             EE
Q psy8473         216 VS  217 (307)
Q Consensus       216 ~~  217 (307)
                      ..
T Consensus       480 ~~  481 (545)
T PRK08162        480 VP  481 (545)
T ss_pred             eE
Confidence            33

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.51  E-value=8.6e-14  Score=133.29  Aligned_cols=128  Identities=19%  Similarity=0.209  Sum_probs=101.4

Q ss_pred             CCcccCCCCCcccccceEEEEe---------CCCCcccccccce---------ecCC--cceEEEEEe---eeccccCCc
Q psy8473          90 GESMLHADNNNEQSNDIAIVLY---------TSGSTGIPKEYRR---------MYKT--GDYGRIVDD---IHRCWSSGD  146 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~---------tsGttG~Pkg~~~---------~~~~--g~~Gel~v~---v~~gy~~~~  146 (307)
                      ++++++.||+||++...+....         ..++.|.|.....         +++.  |..|||++.   ++.+|++++
T Consensus       306 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~  385 (521)
T PRK06187        306 GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRP  385 (521)
T ss_pred             CcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhcCCH
Confidence            5668999999998754443321         3456777764322         3555  888999998   788999886


Q ss_pred             c---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         147 R---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       147 ~---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +   ....++||+|||++++ ++|.+++.||.+++++++|.+++|.+||+.+.++++|.++++++.+++..+..+
T Consensus       386 ~~~~~~~~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~  460 (521)
T PRK06187        386 EATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERP  460 (521)
T ss_pred             HHHHHHhhCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceE
Confidence            6   2334569999999999 599999999999999999999999999999999999999999888766544443

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.51  E-value=9.3e-14  Score=135.33  Aligned_cols=128  Identities=16%  Similarity=0.157  Sum_probs=98.0

Q ss_pred             CCcccCCCCCcccccceEEEEeC-----------CCCcccccccce----------ecCCcceEEEEEe---eeccccCC
Q psy8473          90 GESMLHADNNNEQSNDIAIVLYT-----------SGSTGIPKEYRR----------MYKTGDYGRIVDD---IHRCWSSG  145 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~t-----------sGttG~Pkg~~~----------~~~~g~~Gel~v~---v~~gy~~~  145 (307)
                      +.++++.||+||++.........           ..+.|+|.....          +.+.+..|||+++   ++.|||++
T Consensus       323 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~g~~~~~~~~~~Gel~v~g~~~~~gY~~~  402 (576)
T PRK05620        323 GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGNWVTASYYHS  402 (576)
T ss_pred             CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecCCccccCCCCCceEEEEEcCcccccccCC
Confidence            45689999999987643322111           124555542211          1123567999998   89999998


Q ss_pred             cccc--------------------ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEE
Q psy8473         146 DRAI--------------------KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLS  204 (307)
Q Consensus       146 ~~~~--------------------~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~  204 (307)
                      ++..                    ..++||+|||++++ .+|++++.||.+++++.+|++|++.+||+.+.++|.|.+++
T Consensus       403 ~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~  482 (576)
T PRK05620        403 PTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECA  482 (576)
T ss_pred             ccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEE
Confidence            7622                    23689999999999 59999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCcceEE
Q psy8473         205 VLCYKPGEVDQVS  217 (307)
Q Consensus       205 v~~~~~~~~~~~~  217 (307)
                      |++.++...++..
T Consensus       483 vv~~~~~~~g~~~  495 (576)
T PRK05620        483 VIGYPDDKWGERP  495 (576)
T ss_pred             EEeccCCCcCcee
Confidence            9999877654443

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.50  E-value=1.2e-13  Score=132.74  Aligned_cols=130  Identities=20%  Similarity=0.154  Sum_probs=95.2

Q ss_pred             CCCCcccCCCCCcccccceEEEEe-CCCCcc--cccc---c------ceecCCcce--EEEEEe--eeccccCCcc----
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY-TSGSTG--IPKE---Y------RRMYKTGDY--GRIVDD--IHRCWSSGDR----  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~-tsGttG--~Pkg---~------~~~~~~g~~--Gel~v~--v~~gy~~~~~----  147 (307)
                      +++..+++.||+||++........ .+...|  .|..   +      ..+++.|..  |+++.+  ++.||+++++    
T Consensus       320 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~~~~~~gy~~~~~~t~~  399 (533)
T PRK07798        320 LPNVVLTDSIGSSETGFGGSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLGYYKDPEKTAE  399 (533)
T ss_pred             cCCCeEEeeecccccccccccCCCCCCccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEEeecCccccccCChhhhHH
Confidence            567778999999998543222111 111222  2221   0      114556655  777766  8899999876    


Q ss_pred             ---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 ---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 ---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                         .....+||+|||++++ ++|++++.||.+++++.+|++|+|.+||+.+.++|.|.++++++.++...+..+
T Consensus       400 ~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  473 (533)
T PRK07798        400 TFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEV  473 (533)
T ss_pred             hhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceE
Confidence               1123569999999999 599999999999999999999999999999999999999999888766544433

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.50  E-value=1.6e-13  Score=132.66  Aligned_cols=122  Identities=16%  Similarity=0.204  Sum_probs=94.6

Q ss_pred             CCCCcccCCCCCcccccceEEEEe-----------------------------CCCCcccccccce---------ecCCc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY-----------------------------TSGSTGIPKEYRR---------MYKTG  129 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~-----------------------------tsGttG~Pkg~~~---------~~~~g  129 (307)
                      ++...+++.||+||++...++...                             ..++.|.|.....         +++.+
T Consensus       305 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g  384 (545)
T PRK07768        305 LRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPR  384 (545)
T ss_pred             CCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCC
Confidence            344458999999998754332211                             1245666653222         45677


Q ss_pred             ceEEEEEe---eeccccCCcc---ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcce
Q psy8473         130 DYGRIVDD---IHRCWSSGDR---AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDK  202 (307)
Q Consensus       130 ~~Gel~v~---v~~gy~~~~~---~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~  202 (307)
                      ..|||+++   ++.||++.+.   ....++||+|||+++++ +|.++++||.+++++++|.++++.+||..+..+|+|.+
T Consensus       385 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~  464 (545)
T PRK07768        385 GVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRP  464 (545)
T ss_pred             CEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCccccc
Confidence            88999998   8899998655   23346799999999995 79999999999999999999999999999999999998


Q ss_pred             EEEEEee
Q psy8473         203 LSVLCYK  209 (307)
Q Consensus       203 ~~v~~~~  209 (307)
                      +++++.+
T Consensus       465 ~~vv~~~  471 (545)
T PRK07768        465 GNAVAVR  471 (545)
T ss_pred             ceEEEEE
Confidence            7776554

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.49  E-value=2.7e-13  Score=131.13  Aligned_cols=128  Identities=16%  Similarity=0.161  Sum_probs=97.2

Q ss_pred             CCCcccCCCCCcccccceEEEE----e----------CCCCcccccccce---------ecCC--cceEEEEEe---eec
Q psy8473          89 PGESMLHADNNNEQSNDIAIVL----Y----------TSGSTGIPKEYRR---------MYKT--GDYGRIVDD---IHR  140 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~----~----------tsGttG~Pkg~~~---------~~~~--g~~Gel~v~---v~~  140 (307)
                      ++..+++.||+||++...+...    +          ..++.|+|.....         +++.  +..|+|+++   ++.
T Consensus       317 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~  396 (542)
T PRK06018        317 MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAA  396 (542)
T ss_pred             hCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcch
Confidence            3567899999999875433211    0          0134566653211         2222  256999998   889


Q ss_pred             cccCCcc-ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473         141 CWSSGDR-AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV  216 (307)
Q Consensus       141 gy~~~~~-~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~  216 (307)
                      |||+... ....++||+|||++++ ++|++++.||.+++++.+|.++++.+||+.+..+|.|.++++++.+++..+..
T Consensus       397 gy~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~  474 (542)
T PRK06018        397 AYYRVDGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDER  474 (542)
T ss_pred             hhhcCcccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCce
Confidence            9998543 3345789999999999 59999999999999999999999999999999999999999999887654443

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.48  E-value=2.2e-13  Score=130.59  Aligned_cols=125  Identities=20%  Similarity=0.185  Sum_probs=100.1

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCcccccccc---------eecCCcceEEEEEe---eeccccCCcc---cccc
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYR---------RMYKTGDYGRIVDD---IHRCWSSGDR---AIKY  151 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~---------~~~~~g~~Gel~v~---v~~gy~~~~~---~~~~  151 (307)
                      ++.+++.||+||++...+...   ...|+.|.|....         .+++.|..|||+++   ++.||+++++   ....
T Consensus       303 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~  382 (508)
T TIGR02262       303 GVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQ  382 (508)
T ss_pred             CCchhhCccccccCceeecCCccCCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhhh
Confidence            456899999999875433221   1356788876322         14677888999998   8899999876   2223


Q ss_pred             ccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcc
Q psy8473         152 RRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVD  214 (307)
Q Consensus       152 ~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~  214 (307)
                      ++||+|||++++ ++|.+++.||.+++++++|.+++|.+||+.+.++++|.++++++.++....
T Consensus       383 ~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~  446 (508)
T TIGR02262       383 GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGL  446 (508)
T ss_pred             cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCC
Confidence            689999999999 699999999999999999999999999999999999999999887655433

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PLN02479 acetate-CoA ligase

Probab=99.47  E-value=2.2e-13  Score=132.45  Aligned_cols=88  Identities=17%  Similarity=0.213  Sum_probs=76.9

Q ss_pred             ceEEEEEe---eeccccCCcc---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcce
Q psy8473         130 DYGRIVDD---IHRCWSSGDR---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDK  202 (307)
Q Consensus       130 ~~Gel~v~---v~~gy~~~~~---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~  202 (307)
                      ..|||+++   ++.|||++++   ....++||+|||++++ ++|++++.||.+++++++|++|+|.+||..+..+|.|.+
T Consensus       401 ~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~  480 (567)
T PLN02479        401 TMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLE  480 (567)
T ss_pred             CceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccce
Confidence            56999998   8999999987   2234789999999999 599999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCcceEE
Q psy8473         203 LSVLCYKPGEVDQVS  217 (307)
Q Consensus       203 ~~v~~~~~~~~~~~~  217 (307)
                      +++++.++...+..+
T Consensus       481 ~~v~~~~~~~~~~~~  495 (567)
T PLN02479        481 ASVVARPDERWGESP  495 (567)
T ss_pred             eeEEeccchhcCcee
Confidence            999988766544433

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.43  E-value=1.3e-12  Score=122.05  Aligned_cols=115  Identities=19%  Similarity=0.114  Sum_probs=89.3

Q ss_pred             CcccCCCCCcccccceEEE-EeCCCCccccccccee-c--CCcceEEEEEeeeccccCCccccccccEEeecCeEEE-EC
Q psy8473          91 ESMLHADNNNEQSNDIAIV-LYTSGSTGIPKEYRRM-Y--KTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRI-VD  165 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~-~~tsGttG~Pkg~~~~-~--~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~tGD~g~~-~~  165 (307)
                      .++++.||+||++...... ....++.|+|...... +  ..+..|+++++            ..++||+|||++++ ++
T Consensus       237 ~~~~~~YG~tE~~~~~~~~~~~~~~~~G~p~~~~~~~~~~~~~~~gel~v~------------~~~~~~~TGDl~~~~~d  304 (414)
T PRK08308        237 TYMMQQYGCSEAGCVSICPDMKSHLDLGNPLPHVSVSAGSDENAPEEIVVK------------MGDKEIFTKDLGYKSER  304 (414)
T ss_pred             ChhhhccCccccCCeeecCCCCCCCccCccCCCeEEEEecCCCCCceEEEE------------cCCceEECCceEEECCC
Confidence            4589999999987432211 2356788888754431 1  24556888774            12579999999999 58


Q ss_pred             CeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         166 DILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       166 g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      |++++.||.++++|++|++|+|.+||+.+.++|+|.++++++.++...+..+
T Consensus       305 g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~  356 (414)
T PRK08308        305 GTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERV  356 (414)
T ss_pred             ccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceE
Confidence            9999999999999999999999999999999999999999988877655444

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.43  E-value=2.9e-13  Score=134.73  Aligned_cols=67  Identities=28%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             EEEeeec-ccCccccccccccccccccc-CCcccchhhHHHHHccccccccccccccccccccceEEec
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAP  283 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~-~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~~v~~  283 (307)
                      ++.++|. ..++||++.++||+||+||+ +|++|+|.|||+.|.+||.|.+++|++.+......+++++
T Consensus       536 W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~  604 (696)
T PLN02387        536 WFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVP  604 (696)
T ss_pred             eeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEe
Confidence            5666664 45789999999999999997 6999999999999999999999999987754444445554

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.42  E-value=7.6e-13  Score=124.13  Aligned_cols=125  Identities=18%  Similarity=0.250  Sum_probs=95.8

Q ss_pred             CCcccCCCCCcccccceEEEE----eCCCCccccccccee----cCCcceEEEEEe---eeccccCCcc---ccccccEE
Q psy8473          90 GESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYRRM----YKTGDYGRIVDD---IHRCWSSGDR---AIKYRRMY  155 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~~~----~~~g~~Gel~v~---v~~gy~~~~~---~~~~~~~~  155 (307)
                      +..+++.||+||++...+...    ......|.|......    .+.+..|||++.   ++.||+++++   ....++||
T Consensus       243 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~  322 (436)
T TIGR01923       243 GLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIMVKGANLMKGYLYQGELTPAFEQQGWF  322 (436)
T ss_pred             CCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCCCCceEEEEECCccchhhCCChhhhhhhhcCCCe
Confidence            566899999999875433221    112236666543321    123356999998   8899999765   22346899


Q ss_pred             eecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcc
Q psy8473         156 KTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVD  214 (307)
Q Consensus       156 ~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~  214 (307)
                      +|||++++ ++|.+++.||.++++|++|+++++.+||+.+..+|.|.++++++.++...+
T Consensus       323 ~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~  382 (436)
T TIGR01923       323 NTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWG  382 (436)
T ss_pred             eccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcC
Confidence            99999999 489999999999999999999999999999999999999999877665433

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.41  E-value=1.8e-13  Score=135.34  Aligned_cols=95  Identities=11%  Similarity=-0.104  Sum_probs=67.7

Q ss_pred             HHHHhcCCCcceEEEEEeeCCC---cceEEEEeeec-ccCccccccccccccccccc-CCcccchhhHHHHHcccccccc
Q psy8473         191 EAALSKLSEVDKLSVLCYKPGE---VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKISEVDK  265 (307)
Q Consensus       191 E~~l~~~p~V~~~~v~~~~~~~---~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~-~G~~i~~~eIe~~L~~~p~V~~  265 (307)
                      ++++.+.|.+...+........   ....++.++|. ..++||+++|+||+||+||+ +|++|+|.|||+.|.+||.|.+
T Consensus       459 GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~  538 (651)
T PLN02736        459 GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQ  538 (651)
T ss_pred             ceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeE
Confidence            4455666666544432111000   01235556665 45789999999999999996 7999999999999999999999


Q ss_pred             ccccccccccccceEEeccC
Q psy8473         266 LSVLCYKPGEVDQIWEAPSS  285 (307)
Q Consensus       266 ~~vv~~~~~~~~~~~v~~~~  285 (307)
                      ++|++...++...+|+++..
T Consensus       539 a~V~g~~~~~~~~A~vv~~~  558 (651)
T PLN02736        539 CFVYGDSLNSSLVAVVVVDP  558 (651)
T ss_pred             EEEEecCCCceeEEEEEeCH
Confidence            99998654555666777654

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.39  E-value=8.3e-14  Score=134.53  Aligned_cols=101  Identities=20%  Similarity=0.088  Sum_probs=75.7

Q ss_pred             hhHHHHHHhcCCCcceEEEEEeeCC--Ccc-eEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccc
Q psy8473         187 LSEVEAALSKLSEVDKLSVLCYKPG--EVD-QVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISE  262 (307)
Q Consensus       187 ~~eiE~~l~~~p~V~~~~v~~~~~~--~~~-~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~  262 (307)
                      |+++++++.+.|.|...+.......  ... ..++.++|. ..++||+++++||.||+|+.+|+||+|.|||..+.+||+
T Consensus       369 pg~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~  448 (534)
T COG0318         369 PGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPA  448 (534)
T ss_pred             CCCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCC
Confidence            3555666666777766554321111  111 145667776 478899999999999999999999999999999999999


Q ss_pred             ccccccccccc---ccccceEEeccCCC
Q psy8473         263 VDKLSVLCYKP---GEVDQIWEAPSSAG  287 (307)
Q Consensus       263 V~~~~vv~~~~---~~~~~~~v~~~~~~  287 (307)
                      |.+++|++.++   ++...+|++.+++.
T Consensus       449 V~~aavvgvpd~~~Ge~~~a~v~~~~~~  476 (534)
T COG0318         449 VAEAAVVGVPDERWGERVVAVVVLKPGG  476 (534)
T ss_pred             cceEEEEeCCCCccCceEEEEEEEcCCC
Confidence            99999999886   45555688877654

>PRK07529 AMP-binding domain protein; Validated

Probab=99.37  E-value=1.3e-12  Score=128.75  Aligned_cols=106  Identities=14%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             eeechhHHHHHHhcCCCcceEEEEEeeCCC--cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcc
Q psy8473         183 NRVDLSEVEAALSKLSEVDKLSVLCYKPGE--VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK  259 (307)
Q Consensus       183 ~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~--~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~  259 (307)
                      ..+.++++++++.+.|.+...+........  ....++.++|. ..++||+++++||+||+||++|+||+|.|||+.|.+
T Consensus       410 ~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~  489 (632)
T PRK07529        410 RDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLR  489 (632)
T ss_pred             ccCCCCCceEEEEECCCccccccCCccccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHh
Confidence            445566667777777776655432110000  01234556664 457899999999999999999999999999999999


Q ss_pred             ccccccccccccccc---cccceEEeccCCCC
Q psy8473         260 ISEVDKLSVLCYKPG---EVDQIWEAPSSAGS  288 (307)
Q Consensus       260 ~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~  288 (307)
                      ||+|.+++|++.++.   +...+|+++.++..
T Consensus       490 ~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~  521 (632)
T PRK07529        490 HPAVALAAAVGRPDAHAGELPVAYVQLKPGAS  521 (632)
T ss_pred             CCCeeEEEEEeccCCCCCceeEEEEEEcCCCC
Confidence            999999999987764   44455888766543

>PLN02654 acetate-CoA ligase

Probab=99.36  E-value=1.6e-13  Score=135.87  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=61.3

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAGST  289 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~~  289 (307)
                      ++.++|. ..++||+++++||.||+||++|+||++.|||+.|.+||+|.+++|++.++.   +...+|++++++...
T Consensus       514 ~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~  590 (666)
T PLN02654        514 YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPY  590 (666)
T ss_pred             EEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCC
Confidence            5556664 457899999999999999999999999999999999999999999988764   444568888776543

>KOG1175|consensus

Probab=99.34  E-value=3.3e-13  Score=128.84  Aligned_cols=83  Identities=22%  Similarity=0.249  Sum_probs=68.5

Q ss_pred             EEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccCCCCCCC
Q psy8473         216 VSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSSAGSTDS  291 (307)
Q Consensus       216 ~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~~~~ds  291 (307)
                      .++.++|. ..++|||+++.||.||.++++|+|+...|||++|.+||.|.+++||+.++   ++...+|++++++.....
T Consensus       475 g~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~  554 (626)
T KOG1175|consen  475 GYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPE  554 (626)
T ss_pred             ceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChH
Confidence            45677765 45799999999999999999999999999999999999999999998876   566677999998854443


Q ss_pred             eeeeccc
Q psy8473         292 SFIVKSR  298 (307)
Q Consensus       292 ~f~~~~~  298 (307)
                      .+..||+
T Consensus       555 ~L~kel~  561 (626)
T KOG1175|consen  555 QLTKELV  561 (626)
T ss_pred             HHHHHHH
Confidence            3444443

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.32  E-value=1.9e-13  Score=135.06  Aligned_cols=73  Identities=15%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCCCCC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAGSTD  290 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~~d  290 (307)
                      +.++|. ..++||+++++||.||+||++|+||++.|||+.|.+||+|.+++|++.++.   +...+|+++.++...+
T Consensus       501 ~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~  577 (652)
T TIGR01217       501 WRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLD  577 (652)
T ss_pred             EEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCC
Confidence            455554 457899999999999999999999999999999999999999999988764   4445688877655433

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.32  E-value=1.2e-12  Score=128.84  Aligned_cols=71  Identities=21%  Similarity=0.316  Sum_probs=59.2

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      ++.++|. ..++||+++++||.||+||++|+||++.|||+.|.+||+|.+++|++.++.   +...+|++++.+.
T Consensus       473 ~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~  547 (628)
T TIGR02316       473 LYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESD  547 (628)
T ss_pred             EEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCc
Confidence            4556654 457899999999999999999999999999999999999999999987764   3444587776543

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.31  E-value=9.3e-13  Score=131.39  Aligned_cols=105  Identities=17%  Similarity=0.088  Sum_probs=71.7

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccc
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                      |..+.++++++++.+.+.+...+............++.++|. ..++||+++|+||+||+||++|+||++.|||+.|.+|
T Consensus       331 g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~  410 (705)
T PRK06060        331 GTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIED  410 (705)
T ss_pred             CCCCCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhC
Confidence            444445555555555555543332211111112345666664 4578999999999999999999999999999999999


Q ss_pred             ccccccccccccccc---ccceEEeccCC
Q psy8473         261 SEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       261 p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      |.|.+++|++.++..   ...+|++...+
T Consensus       411 ~~V~~a~vv~~~~~~~~~~~~a~vv~~~~  439 (705)
T PRK06060        411 EAVAEAAVVAVRESTGASTLQAFLVATSG  439 (705)
T ss_pred             CCeeEEEEEeecCccCCeeEEEEEEeccc
Confidence            999999999776543   33457765544

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.30  E-value=4.1e-12  Score=126.73  Aligned_cols=67  Identities=15%  Similarity=0.073  Sum_probs=53.8

Q ss_pred             EEEeeec-ccCccccccccccccccccc-CCcccchhhHHHHHccccccccccccccccccccceEEec
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAP  283 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~-~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~~v~~  283 (307)
                      ++.++|. ..++||++.|+||+||+||+ +|++|+|.+||+.|.+||.|.+++|++........+++++
T Consensus       571 W~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~  639 (746)
T PTZ00342        571 YFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISV  639 (746)
T ss_pred             cccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEEC
Confidence            4455554 45789999999999999994 7999999999999999999999999987544344444443

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.30  E-value=5.6e-12  Score=117.58  Aligned_cols=91  Identities=26%  Similarity=0.369  Sum_probs=73.1

Q ss_pred             CcccCCCCCcccccceEEEE-----eCCCCcccccccc----------eecCCcceEEEEEe---eeccccCCcc----c
Q psy8473          91 ESMLHADNNNEQSNDIAIVL-----YTSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGDR----A  148 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~~-----~tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~~----~  148 (307)
                      ..+++.||+||++...+...     ...++.|.|....          .+++.|..|||+++   ++.||+++++    .
T Consensus       304 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~  383 (417)
T PF00501_consen  304 APIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEA  383 (417)
T ss_dssp             SEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHH
T ss_pred             ccceecccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccc
Confidence            46899999999988776552     2457889886422          25678889999999   9999999876    2


Q ss_pred             cccccEEeecCeEEEE-CCeEEEeeecCCeEEEC
Q psy8473         149 IKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIR  181 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~  181 (307)
                      ...++||+|||+|+++ +|+++++||.+++||++
T Consensus       384 ~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  384 FIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             EETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             cccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            2224799999999996 89999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.29  E-value=1.6e-12  Score=128.86  Aligned_cols=99  Identities=10%  Similarity=-0.029  Sum_probs=70.3

Q ss_pred             eechhHHHHHHhcCCCcceEEEEEeeCCC---cceEEEEeeec-ccCccccccccccccccccc-CCcccchhhHHHHHc
Q psy8473         184 RVDLSEVEAALSKLSEVDKLSVLCYKPGE---VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKI-RGNRVDLSEVEAALS  258 (307)
Q Consensus       184 ~v~~~eiE~~l~~~p~V~~~~v~~~~~~~---~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~-~G~~i~~~eIe~~L~  258 (307)
                      .+.+++.++++.+.|.+...+... +...   ....++.++|. ..++||+++|+||+||+||+ +|+||+|.|||+.|.
T Consensus       462 ~~~~g~~GEl~vrGp~v~~GY~~~-pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~  540 (666)
T PLN02614        462 ALASTPRGEICIRGKTLFSGYYKR-EDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYG  540 (666)
T ss_pred             cCCCCCCceEEEcCCcccccccCC-HHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHh
Confidence            344555667777777776554321 1111   11234556664 45789999999999999995 799999999999999


Q ss_pred             cccccccccccccccccccceEEec
Q psy8473         259 KISEVDKLSVLCYKPGEVDQIWEAP  283 (307)
Q Consensus       259 ~~p~V~~~~vv~~~~~~~~~~~v~~  283 (307)
                      +||.|.+++|++........+++++
T Consensus       541 ~~p~V~~~~V~g~~~~~~l~alvv~  565 (666)
T PLN02614        541 EVQAVDSVWVYGNSFESFLVAIANP  565 (666)
T ss_pred             cCCCeeEEEEEecCCcceEEEEEeC
Confidence            9999999999998654444445554

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.29  E-value=3.3e-13  Score=133.46  Aligned_cols=71  Identities=13%  Similarity=0.056  Sum_probs=59.1

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccCCCC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSSAGS  288 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~~~  288 (307)
                      +.++|. ..++||+++|+||.||+||++|+||++.|||+.|.+||+|.+++|++.++   ++...+|++++.+..
T Consensus       500 ~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~  574 (655)
T PRK03584        500 WRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVT  574 (655)
T ss_pred             eecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCC
Confidence            455654 45789999999999999999999999999999999999999999998776   344456888776543

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.27  E-value=5.7e-12  Score=134.43  Aligned_cols=69  Identities=28%  Similarity=0.257  Sum_probs=56.7

Q ss_pred             EEEEeeecc-cCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEecc
Q psy8473         216 VSEVTSEEI-RGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPS  284 (307)
Q Consensus       216 ~~~~~~~~~-~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~  284 (307)
                      .++.++|.. .++||++.|+||+|||||++|+||+|.|||+.|.+||.|.+++|+..++..   ...+|+++.
T Consensus       678 ~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~  750 (1389)
T TIGR03443       678 RLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQ  750 (1389)
T ss_pred             ceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEecc
Confidence            567777764 578999999999999999999999999999999999999999888655432   333466654

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.26  E-value=8.9e-13  Score=124.84  Aligned_cols=70  Identities=23%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             EEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccC
Q psy8473         216 VSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSS  285 (307)
Q Consensus       216 ~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~  285 (307)
                      .++.++|. ..++||+++|+||.||+||++|++|+|.|||+.|.+||+|.+++|++.++..   ...+|++...
T Consensus       324 g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~  397 (452)
T PRK07445        324 GIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKD  397 (452)
T ss_pred             CEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCC
Confidence            34556664 4578999999999999999999999999999999999999999999877643   3445666543

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.25  E-value=8.1e-12  Score=120.87  Aligned_cols=94  Identities=18%  Similarity=0.032  Sum_probs=65.6

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCCC----cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPGE----VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA  256 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~----~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~  256 (307)
                      |..+.+++.++++.+.+.+...+........    .+..++.++|. ..+++|+++|+||.||+||++|++|+|.|||+.
T Consensus       372 ~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~  451 (539)
T PRK06334        372 KVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESI  451 (539)
T ss_pred             CccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHH
Confidence            4455556666666666655443321111000    12345666664 457899999999999999999999999999999


Q ss_pred             Hcccccccc------cccccccccc
Q psy8473         257 LSKISEVDK------LSVLCYKPGE  275 (307)
Q Consensus       257 L~~~p~V~~------~~vv~~~~~~  275 (307)
                      |.+||+|.+      ++|++.++..
T Consensus       452 l~~~~~v~~~~~~~~~~v~~~~~~~  476 (539)
T PRK06334        452 LMEGFGQNAADHAGPLVVCGLPGEK  476 (539)
T ss_pred             HHHccCCccccccCceEEEcCCCCc
Confidence            999999997      6677766543

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.24  E-value=4.1e-12  Score=125.00  Aligned_cols=72  Identities=19%  Similarity=0.260  Sum_probs=59.9

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAGS  288 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~  288 (307)
                      ++.++|. ..++||+++++||+||+||++|+||++.|||+.|.+||.|.+++|++.++.   +...+|+++.++..
T Consensus       476 ~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~  551 (625)
T TIGR02188       476 YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYE  551 (625)
T ss_pred             EEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCC
Confidence            4556664 447899999999999999999999999999999999999999999987664   44456888776554

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.23  E-value=3.7e-12  Score=126.14  Aligned_cols=68  Identities=13%  Similarity=0.060  Sum_probs=58.0

Q ss_pred             EEEeeec-ccCccccccccccccccccc-CCcccchhhHHHHHccccccccccccccccccccceEEecc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPS  284 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~-~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~~v~~~  284 (307)
                      ++.++|. ..++||+++|+||+||+||+ +|++|+|.|||+.|.+||.|.+++|++.++++...+|+++.
T Consensus       494 w~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~  563 (660)
T PLN02861        494 WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPD  563 (660)
T ss_pred             CcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcC
Confidence            4556654 45789999999999999996 79999999999999999999999999988666666677754

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.23  E-value=1e-11  Score=120.30  Aligned_cols=71  Identities=20%  Similarity=0.216  Sum_probs=58.0

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~~  287 (307)
                      ++.++|. ..++||+++|+||.||+||++|++|+|.|||+.|.+||.|.+++|++.++..   ...+|+++..+.
T Consensus       428 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~  502 (549)
T PRK07788        428 LLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA  502 (549)
T ss_pred             ceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCC
Confidence            3445553 4568999999999999999999999999999999999999999999877654   344577766543

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.23  E-value=1.3e-12  Score=129.07  Aligned_cols=69  Identities=19%  Similarity=0.170  Sum_probs=59.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~  285 (307)
                      ++.++|. ..++||+++++||.||+||++|+||++.|||+.|.+||.|.+++|++.++.   +...+|++++.
T Consensus       493 ~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~  565 (647)
T PTZ00237        493 YYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQ  565 (647)
T ss_pred             EEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEecc
Confidence            5566665 457899999999999999999999999999999999999999999988763   44556888764

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.22  E-value=1.3e-12  Score=128.88  Aligned_cols=72  Identities=19%  Similarity=0.239  Sum_probs=59.5

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAGS  288 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~  288 (307)
                      ++.++|. ..++||+++|+||+||+||++|+||++.|||+.|.+||+|.+++|++.++.   +...+|+++.++..
T Consensus       484 ~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~  559 (637)
T PRK00174        484 MYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEE  559 (637)
T ss_pred             EEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCC
Confidence            4666664 457899999999999999999999999999999999999999999987654   44456777765543

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.20  E-value=1.7e-11  Score=121.32  Aligned_cols=69  Identities=16%  Similarity=0.068  Sum_probs=56.4

Q ss_pred             EEEeeec-ccCccccccccccccccccc-CCcccchhhHHHHHccccccccccccccccccccceEEeccC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~-~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~~v~~~~  285 (307)
                      ++.++|. ..++||+++++||+||+||. +|++|+|.+||+.|.+||.|.+++|++....+...+++++..
T Consensus       494 w~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~vv~~~  564 (660)
T PLN02430        494 WFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNE  564 (660)
T ss_pred             ceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEcCH
Confidence            4556664 45789999999999999996 699999999999999999999999998654555556666543

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.20  E-value=2.2e-12  Score=128.78  Aligned_cols=68  Identities=18%  Similarity=0.132  Sum_probs=57.4

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH-ccccccccccccccccc----cccceEEecc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL-SKISEVDKLSVLCYKPG----EVDQIWEAPS  284 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L-~~~p~V~~~~vv~~~~~----~~~~~~v~~~  284 (307)
                      ++.++|. ..++||+++++||.||+||++|+||++.|||+.| ..||+|.+++|++.++.    +...+|++++
T Consensus       590 ~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~  663 (728)
T PLN03052        590 LRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLK  663 (728)
T ss_pred             EEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEe
Confidence            5566664 4578999999999999999999999999999999 58999999999987764    3345688876

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.17  E-value=7.9e-11  Score=113.49  Aligned_cols=96  Identities=16%  Similarity=0.132  Sum_probs=67.8

Q ss_pred             hhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCccccccccccccccccc-CCcccchhhHHHHHcccc
Q psy8473         187 LSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKIS  261 (307)
Q Consensus       187 ~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~-~G~~i~~~eIe~~L~~~p  261 (307)
                      ..+-++++.+.|.|+..+.-.....   .....++-++|. ..+++|++.++||+||+|+. +|.+|+|..||..+.++|
T Consensus       417 I~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~  496 (613)
T COG1022         417 IADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSP  496 (613)
T ss_pred             EccCceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCC
Confidence            3445567788888876654321110   111334455554 55788999999999999997 589999999999999999


Q ss_pred             ccccccccccccccccceEEec
Q psy8473         262 EVDKLSVLCYKPGEVDQIWEAP  283 (307)
Q Consensus       262 ~V~~~~vv~~~~~~~~~~~v~~  283 (307)
                      -|.+++|++ .+.....+.+++
T Consensus       497 ~I~qi~vvg-~~k~~~~AlIvp  517 (613)
T COG1022         497 LIEQICVVG-DDKKFLVALIVP  517 (613)
T ss_pred             CeeEEEEEe-cCCcceEEEEeC
Confidence            999999999 444444444443

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.17  E-value=3.1e-11  Score=128.00  Aligned_cols=90  Identities=20%  Similarity=0.189  Sum_probs=64.9

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEee--------CC-CcceEEEEeeec-ccCcccccccccccccccccCCcccch
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYK--------PG-EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDL  250 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~--------~~-~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~  250 (307)
                      .|..++++..++++.+.+.+...+.....        ++ ..+..++.++|. ..++||+++|+||.|++||++|+||++
T Consensus       793 ~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~  872 (1296)
T PRK10252        793 RMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIEL  872 (1296)
T ss_pred             CCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecH
Confidence            34555566666666666666544321100        00 013456777775 457899999999999999999999999


Q ss_pred             hhHHHHHccccccccccccc
Q psy8473         251 SEVEAALSKISEVDKLSVLC  270 (307)
Q Consensus       251 ~eIe~~L~~~p~V~~~~vv~  270 (307)
                      .|||+.|.+||.|.+++|+.
T Consensus       873 ~eIE~~l~~~~~v~~a~v~~  892 (1296)
T PRK10252        873 GEIDRAMQALPDVEQAVTHA  892 (1296)
T ss_pred             HHHHHHHHhCccccceEEEE
Confidence            99999999999999997764

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.17  E-value=6.2e-12  Score=121.56  Aligned_cols=104  Identities=14%  Similarity=0.074  Sum_probs=71.2

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccc
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                      |..+.+++.++.+.+.|.+...+. ..........++.++|. ..+++|+++|+||+||+||++|++|++.|||..|.+|
T Consensus       383 ~~~~~~g~~GEl~v~g~~~~~gY~-~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~  461 (537)
T PRK13382        383 FREVPTGEVGTIFVRNDTQFDGYT-SGSTKDFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATH  461 (537)
T ss_pred             CCCCCCCCeeEEEEEcCCcccCcc-ccchhhccCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhC
Confidence            444444555555555555544432 00000011224555554 5578999999999999999999999999999999999


Q ss_pred             cccccccccccccccc---cceEEeccCC
Q psy8473         261 SEVDKLSVLCYKPGEV---DQIWEAPSSA  286 (307)
Q Consensus       261 p~V~~~~vv~~~~~~~---~~~~v~~~~~  286 (307)
                      |.|.+++|++.++...   ..+|+++..+
T Consensus       462 ~~V~~~~v~~~~~~~~g~~~~a~vv~~~~  490 (537)
T PRK13382        462 PDVAEAAVIGVDDEQYGQRLAAFVVLKPG  490 (537)
T ss_pred             CCEeeEEEEccCccccCCEEEEEEEECCC
Confidence            9999999998776543   4457776544

>KOG1179|consensus

Probab=99.15  E-value=2.4e-10  Score=106.13  Aligned_cols=125  Identities=18%  Similarity=0.155  Sum_probs=98.8

Q ss_pred             CCCCcccCCCCCcccccceEEEEeCCCC----------------------cc----cccccceecCCcceEEEEEe----
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYTSGS----------------------TG----IPKEYRRMYKTGDYGRIVDD----  137 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~tsGt----------------------tG----~Pkg~~~~~~~g~~Gel~v~----  137 (307)
                      +.-..+.+.||+||++.....+...-|.                      ||    .++|...++++|+.|.|.-.    
T Consensus       379 Fg~~~IgE~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k  458 (649)
T KOG1179|consen  379 FGIIKIGEFYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQK  458 (649)
T ss_pred             cCCCeEEEEeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccC
Confidence            3334578999999987654443333343                      33    24477779999999966555    


Q ss_pred             ----eeccccCCcc----------ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcce
Q psy8473         138 ----IHRCWSSGDR----------AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDK  202 (307)
Q Consensus       138 ----v~~gy~~~~~----------~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~  202 (307)
                          -+.||.+...          ...++-||.|||+-.+| .|++||.+|..|.+...|+||+..|+|..+.....++|
T Consensus       459 ~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~d  538 (649)
T KOG1179|consen  459 NPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQD  538 (649)
T ss_pred             CchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccc
Confidence                3889988544          44568899999999995 99999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCC
Q psy8473         203 LSVLCYKPGE  212 (307)
Q Consensus       203 ~~v~~~~~~~  212 (307)
                      +.|++..-+.
T Consensus       539 v~VYGV~VP~  548 (649)
T KOG1179|consen  539 VNVYGVTVPG  548 (649)
T ss_pred             eeEEEEecCC
Confidence            9999886543

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.15  E-value=6.3e-12  Score=122.12  Aligned_cols=105  Identities=14%  Similarity=0.038  Sum_probs=70.1

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCCC----cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPGE----VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA  256 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~----~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~  256 (307)
                      |..+.+++.++++.+.|.+...++.. +...    ....++.+++. ..+++|+++++||.||+||++|++|++.|||+.
T Consensus       393 g~~~~~g~~Gei~v~g~~~~~GY~~~-~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~  471 (560)
T PLN02574        393 GCLLPPGNCGELWIQGPGVMKGYLNN-PKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAV  471 (560)
T ss_pred             CcCCCCCCCeEEEEECcchhhhhcCC-hhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHH
Confidence            44444555555555555544333211 1100    01123455553 346899999999999999999999999999999


Q ss_pred             Hccccccccccccccccccc---cceEEeccCCC
Q psy8473         257 LSKISEVDKLSVLCYKPGEV---DQIWEAPSSAG  287 (307)
Q Consensus       257 L~~~p~V~~~~vv~~~~~~~---~~~~v~~~~~~  287 (307)
                      |.+||.|.+++|++.++...   ..+|++...+.
T Consensus       472 l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  505 (560)
T PLN02574        472 LISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS  505 (560)
T ss_pred             HHhCCCcceEEEEccccCCCCcceEEEEEeCCCC
Confidence            99999999999998766433   33466655433

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.15  E-value=4.6e-11  Score=116.19  Aligned_cols=70  Identities=23%  Similarity=0.155  Sum_probs=58.2

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      ++.++|. ..++||+++|+||.||+||++|++|++.|||+.|.+||.|.+++|++.++.   +...+|++++++
T Consensus       415 ~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~  488 (563)
T PLN02860        415 WLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDG  488 (563)
T ss_pred             eEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCc
Confidence            4555554 457899999999999999999999999999999999999999999987764   344557776654

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.14  E-value=1.5e-11  Score=119.78  Aligned_cols=71  Identities=24%  Similarity=0.281  Sum_probs=58.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      ++.+++. ..+++|+++++||+||+|+++|++|+|.|||+.|.+||.|.+++|++.++.   +...+|+++.++.
T Consensus       433 w~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~  507 (570)
T PRK04319        433 WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGY  507 (570)
T ss_pred             ceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCC
Confidence            3445554 457899999999999999999999999999999999999999999987764   4445577766543

>PRK09274 peptide synthase; Provisional

Probab=99.12  E-value=4.6e-11  Score=115.76  Aligned_cols=105  Identities=10%  Similarity=0.024  Sum_probs=72.4

Q ss_pred             eeechhHHHHHHhcCCCcceEEEEEeeC-------CCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHH
Q psy8473         183 NRVDLSEVEAALSKLSEVDKLSVLCYKP-------GEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVE  254 (307)
Q Consensus       183 ~~v~~~eiE~~l~~~p~V~~~~v~~~~~-------~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe  254 (307)
                      ..+.++++++++.+.|.+...+......       +..+..++.++|. ..++||+++++||.||+|+++|.+|+|.|||
T Consensus       380 ~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE  459 (552)
T PRK09274        380 LRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCE  459 (552)
T ss_pred             ccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHH
Confidence            3455556666666666655433221100       0011135666665 4478999999999999999999999999999


Q ss_pred             HHHcccccccccccccccccc--ccceEEeccCCC
Q psy8473         255 AALSKISEVDKLSVLCYKPGE--VDQIWEAPSSAG  287 (307)
Q Consensus       255 ~~L~~~p~V~~~~vv~~~~~~--~~~~~v~~~~~~  287 (307)
                      +.|.+||+|.+++|++.++..  ...+++++.++.
T Consensus       460 ~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~~~  494 (552)
T PRK09274        460 RIFNTHPGVKRSALVGVGVPGAQRPVLCVELEPGV  494 (552)
T ss_pred             HHHHhCcccceeEEEEeCCCCCceEEEEEEccCcc
Confidence            999999999999999876543  233566666554

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.09  E-value=9.1e-12  Score=118.77  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=67.6

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEee--CCCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYK--PGEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL  257 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~--~~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L  257 (307)
                      .|..+.+++.++++.+.+.+...+.....  .......++.++|. ..+++|+++++||.+|+||++|.+|++.|||+.+
T Consensus       324 ~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l  403 (487)
T PRK07638        324 AGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVL  403 (487)
T ss_pred             CCCCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHH
Confidence            45556666666666666665444332110  00011224455554 4578999999999999999999999999999999


Q ss_pred             cccccccccccccccccc
Q psy8473         258 SKISEVDKLSVLCYKPGE  275 (307)
Q Consensus       258 ~~~p~V~~~~vv~~~~~~  275 (307)
                      .+||.|.+++|++.++..
T Consensus       404 ~~~~~v~~~~v~~~~~~~  421 (487)
T PRK07638        404 HEHPAVDEIVVIGVPDSY  421 (487)
T ss_pred             HhCCCeeeEEEEecCchh
Confidence            999999999999877653

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.08  E-value=2.6e-10  Score=110.41  Aligned_cols=70  Identities=16%  Similarity=0.245  Sum_probs=57.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      ++.++|. ..+++|++.++||.||+++++|.+|++.|||+.|.+||.|.+++|++.++..   ...+|+++..+
T Consensus       420 ~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~  493 (547)
T PRK13295        420 WFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPG  493 (547)
T ss_pred             CeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCC
Confidence            4555554 4568899999999999999999999999999999999999999999876543   34456666543

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.08  E-value=2.2e-10  Score=114.57  Aligned_cols=63  Identities=17%  Similarity=0.094  Sum_probs=52.8

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccccccce
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQI  279 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~  279 (307)
                      ++.++|. ..++||+++++||+||+||++|+||+|.|||+.|.+||.+.+++|+..++......
T Consensus       592 w~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~  655 (718)
T PRK08043        592 WYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEA  655 (718)
T ss_pred             eEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCce
Confidence            4556664 45799999999999999999999999999999999999888888887776554443

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.08  E-value=5.1e-10  Score=102.56  Aligned_cols=68  Identities=22%  Similarity=0.083  Sum_probs=54.5

Q ss_pred             EEEeeecccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccccc---cceEEecc
Q psy8473         217 SEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEV---DQIWEAPS  284 (307)
Q Consensus       217 ~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~---~~~~v~~~  284 (307)
                      ++.++|...-.+|+++++||.||+||++|.+|++.|||..|.+||.|.+++|++.++...   ..+|++..
T Consensus       235 ~~~TGDl~~~~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~  305 (358)
T PRK07824        235 WFRTDDLGALDDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGD  305 (358)
T ss_pred             ceecccEEEEeCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeC
Confidence            455666433378999999999999999999999999999999999999999998766443   33355443

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.07  E-value=5.7e-11  Score=118.46  Aligned_cols=93  Identities=15%  Similarity=-0.056  Sum_probs=62.0

Q ss_pred             HHHHHhcCCCcceEEEEEeeCCCc----ceEEEEeeec-ccCcccccccccccccccc-cCCcccchhhHHHHHcccccc
Q psy8473         190 VEAALSKLSEVDKLSVLCYKPGEV----DQVSEVTSEE-IRGVDDILLYEGRTDSQVK-IRGNRVDLSEVEAALSKISEV  263 (307)
Q Consensus       190 iE~~l~~~p~V~~~~v~~~~~~~~----~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik-~~G~~i~~~eIe~~L~~~p~V  263 (307)
                      .++++.+.|.+...+... +....    ...++.++|. ..++||++.|+||+||+|| .+|++|+|.|||+.|.+||.|
T Consensus       507 ~GEL~vrG~~v~~GY~~~-pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V  585 (700)
T PTZ00216        507 RGEILLRGPFLFKGYYKQ-EELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELV  585 (700)
T ss_pred             CceEEEcCCcccchhcCC-hhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCc
Confidence            345556666665444321 11110    1124556664 4578999999999999998 899999999999999999999


Q ss_pred             ccc--cccccccccccceEEec
Q psy8473         264 DKL--SVLCYKPGEVDQIWEAP  283 (307)
Q Consensus       264 ~~~--~vv~~~~~~~~~~~v~~  283 (307)
                      .++  +|+..++.....+++++
T Consensus       586 ~~~~~~v~~~~~~~~l~a~vv~  607 (700)
T PTZ00216        586 VPNGVCVLVHPARSYICALVLT  607 (700)
T ss_pred             ccceEEEEEecCCceEEEEEec
Confidence            973  44444444444445554

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.03  E-value=4.5e-10  Score=110.08  Aligned_cols=70  Identities=19%  Similarity=0.107  Sum_probs=56.2

Q ss_pred             EEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccc----ccccceEEeccC
Q psy8473         216 VSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP----GEVDQIWEAPSS  285 (307)
Q Consensus       216 ~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~----~~~~~~~v~~~~  285 (307)
                      .++.++|. ..++||+++++||.||+||++|+||++.|||+.|.+||.|.+++|++.++    +....++++...
T Consensus       439 ~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~  513 (600)
T PRK08279        439 AWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLAD  513 (600)
T ss_pred             ceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecC
Confidence            45666665 45789999999999999999999999999999999999999999987653    333344555443

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.02  E-value=9.9e-11  Score=104.50  Aligned_cols=106  Identities=20%  Similarity=0.188  Sum_probs=86.6

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeecc-cCcccccccccccccccccCCcccchhhHHHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEEI-RGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA  256 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~~-~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~  256 (307)
                      .|..|.|+|++..+.+.|.--..+.....+.   .....+|.+++.. .++|||+...||.||||+++|++|..+|||+.
T Consensus       376 dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~  455 (542)
T COG1021         376 DGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENL  455 (542)
T ss_pred             CCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHH
Confidence            7999999999999999998655554433222   1234456676654 57999999999999999999999999999999


Q ss_pred             Hcccccccccccccccc---ccccceEEeccCC
Q psy8473         257 LSKISEVDKLSVLCYKP---GEVDQIWEAPSSA  286 (307)
Q Consensus       257 L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~  286 (307)
                      |..||+|.++++|..+|   ++..++|++++.-
T Consensus       456 LL~HP~V~~AAlVampDelLGEksCAfiv~~~~  488 (542)
T COG1021         456 LLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP  488 (542)
T ss_pred             HhhCchhhhhhhhcCchhhcCcceeEEEEecCC
Confidence            99999999999999988   6677789887653

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.01  E-value=2.6e-10  Score=110.85  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=56.8

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      ++.+++. ..+++|++.+.||.||+++++|.+|++.|||+.|.+||.|.+++|++.++..   ...+|++..++
T Consensus       434 ~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~  507 (562)
T PRK05677        434 WLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPG  507 (562)
T ss_pred             cccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCC
Confidence            3455554 4568899999999999999999999999999999999999999999877643   34456665543

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.99  E-value=7.7e-11  Score=113.95  Aligned_cols=70  Identities=16%  Similarity=0.078  Sum_probs=57.5

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      ++.++|. ..+.+|+++++||+||+++++|.+|++.|||+.|.+||.|.+++|++.++.   +...+|++....
T Consensus       417 ~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~  490 (546)
T PRK08314        417 FFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPE  490 (546)
T ss_pred             eEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCC
Confidence            5566664 457889999999999999999999999999999999999999999987653   334457776554

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=98.98  E-value=3.4e-10  Score=109.37  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=71.9

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeCCC---cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE---VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA  256 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~---~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~  256 (307)
                      .|..+.++++++++.+.+.+...+........   ....++.++|. ..+++|+++++||.+|+++++|.++++.|||+.
T Consensus       371 ~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~  450 (536)
T PRK10946        371 DGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENL  450 (536)
T ss_pred             CCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHH
Confidence            35555566666666666665544432111000   01224556664 457899999999999999999999999999999


Q ss_pred             Hcccccccccccccccccc---ccceEEecc
Q psy8473         257 LSKISEVDKLSVLCYKPGE---VDQIWEAPS  284 (307)
Q Consensus       257 L~~~p~V~~~~vv~~~~~~---~~~~~v~~~  284 (307)
                      |.+||.|.+++|+..++..   ...+|+++.
T Consensus       451 l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~  481 (536)
T PRK10946        451 LLRHPAVIHAALVSMEDELMGEKSCAFLVVK  481 (536)
T ss_pred             HHhCCCcceEEEEcCCCcccCceEEEEEEeC
Confidence            9999999999999877643   334466554

>PLN02246 4-coumarate--CoA ligase

Probab=98.97  E-value=8.9e-11  Score=113.43  Aligned_cols=105  Identities=16%  Similarity=0.068  Sum_probs=69.3

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCCC---cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPGE---VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL  257 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~---~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L  257 (307)
                      |..+.+++.++++.+.+.+...+........   ....++.+++. ..+++|+++++||.||++|++|.+|++.|||+.|
T Consensus       375 ~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l  454 (537)
T PLN02246        375 GASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALL  454 (537)
T ss_pred             CCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHH
Confidence            3444455555555555555444322111000   01123445553 4468899999999999999999999999999999


Q ss_pred             ccccccccccccccccccc---cceEEeccCC
Q psy8473         258 SKISEVDKLSVLCYKPGEV---DQIWEAPSSA  286 (307)
Q Consensus       258 ~~~p~V~~~~vv~~~~~~~---~~~~v~~~~~  286 (307)
                      .+||.|.+++|++.++...   ..++++...+
T Consensus       455 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  486 (537)
T PLN02246        455 ISHPSIADAAVVPMKDEVAGEVPVAFVVRSNG  486 (537)
T ss_pred             HhCCCeeEEEEEcccCccCCceeEEEEEeCCC
Confidence            9999999999998765443   3346655443

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.97  E-value=2.9e-09  Score=97.36  Aligned_cols=62  Identities=13%  Similarity=0.110  Sum_probs=56.4

Q ss_pred             ccccEEeecCeEEE--ECCeEEEeeecCCeEEECC---eeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         150 KYRRMYKTGDYGRI--VDDILLYEGRTDSQVKIRG---NRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       150 ~~~~~~~tGD~g~~--~~g~l~~~GR~~~~i~~~G---~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ..++||+|||+|+.  ++|++++.||.+     +|   ++|+|. ||+++.++|+|.+++|++.+++..++.+
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v  272 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGL  272 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEE
Confidence            35799999999997  399999999997     78   799999 9999999999999999999998887766

>PRK05852 acyl-CoA synthetase; Validated

Probab=98.96  E-value=1e-10  Score=112.91  Aligned_cols=104  Identities=14%  Similarity=0.045  Sum_probs=71.2

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeCCC---cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE---VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA  256 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~---~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~  256 (307)
                      .|..+.+++.++++.+.+.+...+.. .+...   ....++.++|. ..++||++++.||.||+++++|.++++.|||+.
T Consensus       371 ~g~~~~~g~~Gel~v~g~~v~~gY~~-~~~~t~~~~~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~  449 (534)
T PRK05852        371 DGLPLPAGAVGEVWLRGTTVVRGYLG-DPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGV  449 (534)
T ss_pred             CCCCCCCCCceEEEEecCcccchhcC-CcccchhhhcCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHH
Confidence            45555556666666666655443322 11111   01124455553 456899999999999999999999999999999


Q ss_pred             Hccccccccccccccccc---cccceEEeccC
Q psy8473         257 LSKISEVDKLSVLCYKPG---EVDQIWEAPSS  285 (307)
Q Consensus       257 L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~  285 (307)
                      |.+||.|.+++|++.++.   +...+|++...
T Consensus       450 l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~  481 (534)
T PRK05852        450 LASHPNVMEAAVFGVPDQLYGEAVAAVIVPRE  481 (534)
T ss_pred             HHhCCCeeeEEEEecCCcCcCceEEEEEEECC
Confidence            999999999999987764   33445666543

>PRK07867 acyl-CoA synthetase; Validated

Probab=98.96  E-value=1e-09  Score=106.05  Aligned_cols=71  Identities=11%  Similarity=0.161  Sum_probs=57.8

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~~  287 (307)
                      ++.++|. ..+++|+++++||.||+++++|++|++.|||+.|.+||.|.+++|++.++..   ...+|++..++.
T Consensus       382 ~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~  456 (529)
T PRK07867        382 VYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGA  456 (529)
T ss_pred             eEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCC
Confidence            4555554 4468899999999999999999999999999999999999999999887643   334466665543

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=98.95  E-value=1.3e-09  Score=105.26  Aligned_cols=70  Identities=14%  Similarity=0.228  Sum_probs=57.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      ++.++|. ..+++|+++++||.||+++++|++|+|.|||+.|.+||.|.+++|++.++..   ...+++++..+
T Consensus       418 ~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~  491 (538)
T TIGR03208       418 WFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPG  491 (538)
T ss_pred             ceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCC
Confidence            4555554 4568999999999999999999999999999999999999999999876543   34456665543

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=98.94  E-value=8.2e-10  Score=106.96  Aligned_cols=70  Identities=19%  Similarity=0.138  Sum_probs=56.7

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      ++.+++. ..++||+++++||.||+++++|++|++.|||..|.+||.|.+++|++.++.   +...+|++...+
T Consensus       418 ~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~  491 (546)
T PLN02330        418 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPK  491 (546)
T ss_pred             ceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCC
Confidence            4555554 446889999999999999999999999999999999999999999987654   333456665543

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=98.94  E-value=6.8e-10  Score=107.51  Aligned_cols=69  Identities=17%  Similarity=0.133  Sum_probs=55.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~  285 (307)
                      ++.++|. ..++||++.++||.||+++++|.+++|.|||+.+.+||.|.+++|++.++..   ...+++++..
T Consensus       401 ~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~  473 (542)
T PRK06155        401 WFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRD  473 (542)
T ss_pred             cEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECC
Confidence            4455554 4468999999999999999999999999999999999999999999876632   2233555443

>PRK05857 acyl-CoA synthetase; Validated

Probab=98.93  E-value=1.1e-09  Score=105.89  Aligned_cols=68  Identities=18%  Similarity=0.157  Sum_probs=55.3

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccccc---ceEEecc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVD---QIWEAPS  284 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~---~~~v~~~  284 (307)
                      ++.++|. ..+++|+++++||.||++|++|.++++.|||..|..||.|.+++|++.++....   .++++..
T Consensus       403 ~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~  474 (540)
T PRK05857        403 WVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVAS  474 (540)
T ss_pred             ceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeC
Confidence            4455554 446899999999999999999999999999999999999999999988764433   3455543

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=98.93  E-value=2.3e-10  Score=108.30  Aligned_cols=68  Identities=16%  Similarity=0.084  Sum_probs=54.4

Q ss_pred             EEEeeecccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccccc---cceEEecc
Q psy8473         217 SEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEV---DQIWEAPS  284 (307)
Q Consensus       217 ~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~---~~~~v~~~  284 (307)
                      ++.++|...-.||+++|+||.||+||++|.+|+|.|||+.|.+||.|.+++|++.++...   ..+|++..
T Consensus       333 ~~~TGD~~~~~~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~  403 (458)
T PRK09029        333 WFATRDRGEWQNGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESD  403 (458)
T ss_pred             ccCCCCcEEEeCCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcC
Confidence            445555433228999999999999999999999999999999999999999998876543   33455543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.92  E-value=1.4e-09  Score=114.18  Aligned_cols=62  Identities=15%  Similarity=0.145  Sum_probs=53.8

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccccccc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQ  278 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~  278 (307)
                      ++.++|. ..++||+++++||.||++|++|+||++.|||+.|.+||.+.+++|+..++.....
T Consensus      1011 ~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~ 1073 (1140)
T PRK06814       1011 WYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGE 1073 (1140)
T ss_pred             eEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCc
Confidence            5566664 4579999999999999999999999999999999999999999999887755443

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=98.91  E-value=6.2e-10  Score=107.31  Aligned_cols=70  Identities=13%  Similarity=0.132  Sum_probs=57.7

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      ++.++|. ..+++|+++++||.||+|+++|.+|++.|||+.|.+||.|.+++|++.++..   ...+|+++..+
T Consensus       409 ~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~  482 (527)
T TIGR02275       409 FYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP  482 (527)
T ss_pred             CEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC
Confidence            4556664 4468999999999999999999999999999999999999999999887653   34457766543

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06839 acyl-CoA synthetase; Validated

Probab=98.91  E-value=1.2e-09  Score=104.30  Aligned_cols=70  Identities=19%  Similarity=0.190  Sum_probs=56.9

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccccc---cceEEeccCCC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEV---DQIWEAPSSAG  287 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~---~~~~v~~~~~~  287 (307)
                      +.++|. ..+++|+++++||.||+|+.+|.+|+|.|||+.|.+||.|.+++|++.++...   ..+|++.+++.
T Consensus       373 ~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~  446 (496)
T PRK06839        373 LCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSS  446 (496)
T ss_pred             eeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCC
Confidence            455554 44689999999999999999999999999999999999999999998776543   34566665543

>PRK13383 acyl-CoA synthetase; Provisional

Probab=98.90  E-value=1.7e-09  Score=104.02  Aligned_cols=70  Identities=19%  Similarity=0.120  Sum_probs=56.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      ++.+++. ..+++|+++++||.||++|++|.++++.|||+.|.+||.|.++++++.++..   ...+|++...+
T Consensus       397 ~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~  470 (516)
T PRK13383        397 MTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPG  470 (516)
T ss_pred             ceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC
Confidence            3445553 4568899999999999999999999999999999999999999999876543   33346665543

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=98.90  E-value=1.1e-08  Score=96.14  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=76.5

Q ss_pred             CCcccCCCCCccccc-ceEEEE--eCCCCccccc---------ccceecCCcceEEEEEe-eeccccCCccccccccEEe
Q psy8473          90 GESMLHADNNNEQSN-DIAIVL--YTSGSTGIPK---------EYRRMYKTGDYGRIVDD-IHRCWSSGDRAIKYRRMYK  156 (307)
Q Consensus        90 ~~~~~~~yg~te~~~-~~a~~~--~tsGttG~Pk---------g~~~~~~~g~~Gel~v~-v~~gy~~~~~~~~~~~~~~  156 (307)
                      ++.+++.||+||++. .+++..  ...|....+-         ....+++.|..|+|++. .....       ....||+
T Consensus       220 g~~v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~~~~-------~p~~ry~  292 (422)
T TIGR02155       220 GMKATDIYGLSEVIGPGVAMECVETQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLTKEA-------LPVIRYR  292 (422)
T ss_pred             CCceEecccchhhcCCceeecccccCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCCccc-------cceeeEE
Confidence            566899999999742 222211  1122111100         01225677889999987 22111       1246999


Q ss_pred             ecCeEEEE-C-C-----eEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEee
Q psy8473         157 TGDYGRIV-D-D-----ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK  209 (307)
Q Consensus       157 tGD~g~~~-~-g-----~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~  209 (307)
                      |||+++++ + |     .+++.||.+|+++++|.+|+|.++|.++..+|.|...+.+...
T Consensus       293 TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~  352 (422)
T TIGR02155       293 TRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELT  352 (422)
T ss_pred             cCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEE
Confidence            99999995 3 4     4679999999999999999999999999999999755544443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.90  E-value=3.9e-10  Score=118.25  Aligned_cols=95  Identities=21%  Similarity=0.039  Sum_probs=68.4

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCCC-------cceEEEEeeec-ccCcccccccccccccccccCCcccchhhH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPGE-------VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEV  253 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~-------~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eI  253 (307)
                      |..+.+++.++.+.+.|.+...+... +...       .+..++.++|. ..++||+++++||.||++|++|++|++.||
T Consensus       979 ~~~~~~g~~Gel~v~g~~~~~gY~~~-~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~ei 1057 (1146)
T PRK08633        979 FEELPPGEDGLILIGGPQVMKGYLGD-PEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAV 1057 (1146)
T ss_pred             CccCCCCCceEEEEcCCCccccccCC-ccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHH
Confidence            55566667777777777665544321 1110       11245666664 557899999999999999999999999999


Q ss_pred             HHHHcccc--cccccccccccccccc
Q psy8473         254 EAALSKIS--EVDKLSVLCYKPGEVD  277 (307)
Q Consensus       254 e~~L~~~p--~V~~~~vv~~~~~~~~  277 (307)
                      |+.|.+||  .+.+++|++.++....
T Consensus      1058 E~~l~~~~~~~~~~~~v~~~~~~~~g 1083 (1146)
T PRK08633       1058 EEELAKALGGEEVVFAVTAVPDEKKG 1083 (1146)
T ss_pred             HHHHHhccCCCCceEEEEeccCCCCC
Confidence            99999998  5667888877765433

>KOG1177|consensus

Probab=98.89  E-value=3.4e-10  Score=103.27  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=62.4

Q ss_pred             ceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccccc---ceEEeccCCCC
Q psy8473         214 DQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVD---QIWEAPSSAGS  288 (307)
Q Consensus       214 ~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~---~~~v~~~~~~~  288 (307)
                      ...++-++|. ..+++|++.++||.+|||+.+|+||+|.|||++|.+||.|.++.|++++|+.+.   ++|+.+..+..
T Consensus       459 ~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e  537 (596)
T KOG1177|consen  459 NDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAE  537 (596)
T ss_pred             cccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccc
Confidence            3445555554 458999999999999999999999999999999999999999999999885544   55777766554

>PRK07514 malonyl-CoA synthase; Validated

Probab=98.88  E-value=2.9e-09  Score=101.89  Aligned_cols=69  Identities=16%  Similarity=0.094  Sum_probs=55.4

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~  285 (307)
                      ++.+++. ..+++|++.++||.||++|++|.++++.|||+.|.+||.|.+++|++.++..   ...+|++...
T Consensus       378 ~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~  450 (504)
T PRK07514        378 FFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKP  450 (504)
T ss_pred             CeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECC
Confidence            3455554 4468899999999999999999999999999999999999999999876533   3344666544

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=98.88  E-value=6.4e-09  Score=96.43  Aligned_cols=97  Identities=15%  Similarity=0.042  Sum_probs=69.5

Q ss_pred             cccCCCCCcccccceEEEEeCCCCcccccccceecCCcceEEEEEeeeccccCCccccccccEEeecCeEEE-ECCeEEE
Q psy8473          92 SMLHADNNNEQSNDIAIVLYTSGSTGIPKEYRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRI-VDDILLY  170 (307)
Q Consensus        92 ~~~~~yg~te~~~~~a~~~~tsGttG~Pkg~~~~~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~tGD~g~~-~~g~l~~  170 (307)
                      .+++.||+||++...+.  ..++..|.|.+.....         ..       +........|++|||.+++ ++|++++
T Consensus       232 ~v~~~YG~TEt~~i~~~--~~~~~~~~~~p~~~~~---------~~-------~~~~~g~~~~~~tgD~g~~d~~G~l~i  293 (386)
T TIGR02372       232 RLLEVYGATETGGIGLR--EAPDDPFRLLPDLACF---------AD-------TLSSAGLARRLDLQDRLAWDKDGGFTI  293 (386)
T ss_pred             chhheeccccccccccc--cCCCCCcccCCCcccc---------CC-------CccCCCccceeecCceEEEcCCCcEEE
Confidence            47899999998753221  2244445443321100         00       0000012347899999999 5999999


Q ss_pred             eeecCCeEEECCeeechhHHHHHHhcCCCcceEEEE
Q psy8473         171 EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL  206 (307)
Q Consensus       171 ~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~  206 (307)
                      .||.+++|+++|++|+|.+||+.+.++|.|.++++.
T Consensus       294 ~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~  329 (386)
T TIGR02372       294 LGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVR  329 (386)
T ss_pred             ecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEE
Confidence            999999999999999999999999999999998875

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.87  E-value=4.2e-09  Score=104.01  Aligned_cols=109  Identities=31%  Similarity=0.394  Sum_probs=87.1

Q ss_pred             CCcccCCCCCcccccceEEEEeCC-----CCccccccc---------ceecCCcceEEEEEe---eeccccCCcc---cc
Q psy8473          90 GESMLHADNNNEQSNDIAIVLYTS-----GSTGIPKEY---------RRMYKTGDYGRIVDD---IHRCWSSGDR---AI  149 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~ts-----GttG~Pkg~---------~~~~~~g~~Gel~v~---v~~gy~~~~~---~~  149 (307)
                      ...+.+.||+||+..+..+.....     -..|.|...         ..++|.|..||+++.   +..||++.++   ..
T Consensus       512 ~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~  591 (642)
T COG1020         512 ARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAER  591 (642)
T ss_pred             cceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHH
Confidence            456799999999766665554332     246677653         337889999999999   8999999998   11


Q ss_pred             ccc-cEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCC
Q psy8473         150 KYR-RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLS  198 (307)
Q Consensus       150 ~~~-~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p  198 (307)
                      ... ++|+|||++++ .+|.+.++||.|.++|+.|++|.++|||..+..+|
T Consensus       592 f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         592 FIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             hhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            112 48999999998 69999999999999999999999999999988764

>PRK09088 acyl-CoA synthetase; Validated

Probab=98.87  E-value=2.7e-09  Score=101.72  Aligned_cols=70  Identities=20%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      ++.++|. ..+++|+++++||.||+++.+|.++++.|||+.|.+||.|.+++|++.++.   +...++++....
T Consensus       362 ~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~  435 (488)
T PRK09088        362 WFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADG  435 (488)
T ss_pred             CeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCC
Confidence            4556664 446899999999999999999999999999999999999999999987653   344456665443

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=98.87  E-value=2.9e-10  Score=110.51  Aligned_cols=68  Identities=12%  Similarity=0.108  Sum_probs=55.6

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEecc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPS  284 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~  284 (307)
                      ++.++|. ..+++|+++++||.||+++++|++|++.|||..|.+||.|.+++|++.++..   ...+|++..
T Consensus       442 ~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  513 (562)
T PRK12492        442 WFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVAR  513 (562)
T ss_pred             ceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeC
Confidence            4556654 4578999999999999999999999999999999999999999999876543   333455543

>PRK06145 acyl-CoA synthetase; Validated

Probab=98.86  E-value=1.8e-09  Score=103.15  Aligned_cols=69  Identities=14%  Similarity=0.123  Sum_probs=55.5

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~  285 (307)
                      ++.++|. ..+.+|+++++||.||++|++|.++++.+||..|.+||.|.+++|++.++..   ...+++++..
T Consensus       374 ~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  446 (497)
T PRK06145        374 WFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNP  446 (497)
T ss_pred             CeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECC
Confidence            3445553 4568899999999999999999999999999999999999999999876643   3334555543

>PRK13391 acyl-CoA synthetase; Provisional

Probab=98.86  E-value=3e-10  Score=109.00  Aligned_cols=71  Identities=14%  Similarity=0.076  Sum_probs=56.7

Q ss_pred             EEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         216 VSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       216 ~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      .++.+++. ..+++|+++++||.||+++.+|.++++.|||+.|.+||.|.+++|++.++..   ...+|+++..+
T Consensus       382 ~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~  456 (511)
T PRK13391        382 TWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDG  456 (511)
T ss_pred             CEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCC
Confidence            35556664 4578999999999999999999999999999999999999999999776543   33345555443

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=98.85  E-value=2.8e-09  Score=102.35  Aligned_cols=71  Identities=13%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~~  287 (307)
                      ++.++|. ..++||+++++||.||++|++|.+|++.|||+.+.+||.|.+++|++.++..   ...+|++++.+.
T Consensus       399 ~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~  473 (517)
T PRK08008        399 WLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGE  473 (517)
T ss_pred             CeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCC
Confidence            3445553 4568999999999999999999999999999999999999999999887643   334577766543

>PRK07470 acyl-CoA synthetase; Validated

Probab=98.85  E-value=2.7e-09  Score=102.86  Aligned_cols=70  Identities=19%  Similarity=0.096  Sum_probs=56.3

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      ++.++|. ..+.+|++.+.||+||++|++|.++++.|||..|.+||.|.+++|++.++..   ...++++...+
T Consensus       395 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~  468 (528)
T PRK07470        395 WFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDG  468 (528)
T ss_pred             cEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCC
Confidence            3555554 4568899999999999999999999999999999999999999999876643   33446655443

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.84  E-value=5.6e-09  Score=99.95  Aligned_cols=68  Identities=19%  Similarity=0.144  Sum_probs=55.2

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSS  285 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~  285 (307)
                      +.+++. ..+.+|+++++||.||+++++|.++++.+||+.|.+||+|.+++|++.++.   +...+|++..+
T Consensus       394 ~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~  465 (513)
T PRK07656        394 LHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKP  465 (513)
T ss_pred             eeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECC
Confidence            445553 345789999999999999999999999999999999999999999976654   33345776654

>PRK06178 acyl-CoA synthetase; Validated

Probab=98.83  E-value=2.4e-09  Score=104.11  Aligned_cols=70  Identities=24%  Similarity=0.163  Sum_probs=56.5

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      ++.++|. ..++||+++++||+||+++++|.++++.|||+.|.+||.|.++++++.++.   +...+|+++..+
T Consensus       443 ~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~  516 (567)
T PRK06178        443 WLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPG  516 (567)
T ss_pred             ceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCC
Confidence            4556654 446789999999999999999999999999999999999999999986653   334456665543

>PRK12583 acyl-CoA synthetase; Provisional

Probab=98.82  E-value=3e-09  Score=103.10  Aligned_cols=69  Identities=14%  Similarity=0.103  Sum_probs=55.6

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~  285 (307)
                      ++.+++. ..++||++++.||+||+++++|.+|++.+||+.|.+||.|.+++|++.++..   ...+|++..+
T Consensus       429 ~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  501 (558)
T PRK12583        429 WMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHP  501 (558)
T ss_pred             CeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECC
Confidence            3455553 4578999999999999999999999999999999999999999999876543   2334666543

>PRK06188 acyl-CoA synthetase; Validated

Probab=98.82  E-value=5.3e-10  Score=107.60  Aligned_cols=69  Identities=16%  Similarity=0.072  Sum_probs=56.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~  285 (307)
                      ++.+++. ..+++|++++.||.|++++++|.++++.+||+.|.+||.|.+++|++.++..   ...+|+++.+
T Consensus       394 ~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  466 (524)
T PRK06188        394 WLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRP  466 (524)
T ss_pred             ceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECC
Confidence            3555553 4578999999999999999999999999999999999999999999876543   3445666544

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=98.80  E-value=6.3e-09  Score=99.45  Aligned_cols=57  Identities=28%  Similarity=0.381  Sum_probs=48.2

Q ss_pred             EEEEeeecccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccc
Q psy8473         216 VSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYK  272 (307)
Q Consensus       216 ~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~  272 (307)
                      .++.++|...-.+++++++||.+|+|+++|.+|++.|||+.|.+||.|.++++++..
T Consensus       374 ~~~~TGDlg~~~~~~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~  430 (502)
T TIGR01734       374 PAYRTGDAGTITDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKY  430 (502)
T ss_pred             EEEECCCEEEEECCEEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEE
Confidence            356666654433449999999999999999999999999999999999999999743

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=98.79  E-value=6.1e-09  Score=99.89  Aligned_cols=68  Identities=19%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccccc---ceEEecc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVD---QIWEAPS  284 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~---~~~v~~~  284 (307)
                      ++.+++. ..+.+|+++++||.||++|++|.+|++.|||+.|.+||.|.++++++.++....   .++++..
T Consensus       380 ~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  451 (509)
T PRK12406        380 FITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQ  451 (509)
T ss_pred             CeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEEC
Confidence            3445553 456889999999999999999999999999999999999999999887665433   2355544

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.79  E-value=6.6e-09  Score=100.51  Aligned_cols=70  Identities=10%  Similarity=0.084  Sum_probs=56.0

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      ++.+++. ..++||+++++||.||+++.+|.++++.|||..|..||.|.++++++.++..   ...++++..++
T Consensus       410 ~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~  483 (539)
T PRK07008        410 WFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPG  483 (539)
T ss_pred             CcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCC
Confidence            3445553 4568999999999999999999999999999999999999999999877643   33446555443

>PRK07787 acyl-CoA synthetase; Validated

Probab=98.78  E-value=7.6e-09  Score=98.36  Aligned_cols=67  Identities=19%  Similarity=0.201  Sum_probs=54.8

Q ss_pred             EEEeeec-ccCccccccccccc-ccccccCCcccchhhHHHHHcccccccccccccccccccc---ceEEec
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRT-DSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVD---QIWEAP  283 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~-dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~---~~~v~~  283 (307)
                      ++.++|. ..++||+++++||+ |++++.+|.++++.|||+.|.+||.|.+++|++.++....   .+|++.
T Consensus       351 ~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~  422 (471)
T PRK07787        351 WFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVG  422 (471)
T ss_pred             ceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEe
Confidence            4555554 45789999999996 8999999999999999999999999999999988765433   335554

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.77  E-value=4.1e-09  Score=102.66  Aligned_cols=70  Identities=17%  Similarity=0.066  Sum_probs=55.8

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      ++.++|. ..+++|++.++||+||+++++|.+|++.|||+.+.+||.|.+++|++.++.   +...+++++..+
T Consensus       446 ~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~  519 (573)
T PRK05605        446 WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPG  519 (573)
T ss_pred             CcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCC
Confidence            3445553 446889999999999999999999999999999999999999999976553   333446665543

>PRK08315 AMP-binding domain protein; Validated

Probab=98.77  E-value=1e-09  Score=106.49  Aligned_cols=69  Identities=13%  Similarity=0.124  Sum_probs=55.9

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~  285 (307)
                      ++.+++. ..++||+++|+||.||+++++|.++++.|||+.|.+||.|.+++|+...+..   ...+|+++..
T Consensus       428 ~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  500 (559)
T PRK08315        428 WMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRP  500 (559)
T ss_pred             CEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCC
Confidence            4555554 4468999999999999999999999999999999999999999999876543   3345666544

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=98.77  E-value=4.4e-09  Score=102.09  Aligned_cols=68  Identities=12%  Similarity=0.085  Sum_probs=55.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEecc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPS  284 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~  284 (307)
                      ++.+++. ..+++|+++++||++|+++++|.+|++.|||..|.+||.|.+++|++.++.   +...+|++..
T Consensus       436 ~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~  507 (557)
T PRK07059        436 FFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKK  507 (557)
T ss_pred             ceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeC
Confidence            4555554 457889999999999999999999999999999999999999999976553   3344565543

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=98.76  E-value=1.6e-08  Score=96.87  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=49.4

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG  274 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~  274 (307)
                      +.+++. ..+.+|++++.||.||+++.+|.++++.|||+.|.+||.|.+++|++.++.
T Consensus       396 ~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~  453 (515)
T TIGR03098       396 VWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDP  453 (515)
T ss_pred             eeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCc
Confidence            334543 346889999999999999999999999999999999999999999987653

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK08316 acyl-CoA synthetase; Validated

Probab=98.74  E-value=1e-08  Score=98.44  Aligned_cols=70  Identities=17%  Similarity=0.158  Sum_probs=56.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccccc---cceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEV---DQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~---~~~~v~~~~~  286 (307)
                      ++.+++. ..++||+++++||.||+++++|.+|++.+||+.|.++|.|.+++|++.++...   ..+++++..+
T Consensus       396 ~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  469 (523)
T PRK08316        396 WFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAG  469 (523)
T ss_pred             CeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCC
Confidence            3455553 45689999999999999999999999999999999999999999998765433   3446665443

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=98.74  E-value=1.5e-09  Score=106.75  Aligned_cols=68  Identities=16%  Similarity=0.230  Sum_probs=52.6

Q ss_pred             EEEeeeccc-----Ccccccccccccccccc-cCCcccc--hhhHHHHHccccccccccccccccccccceEEeccC
Q psy8473         217 SEVTSEEIR-----GVDDILLYEGRTDSQVK-IRGNRVD--LSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~~~-----~~dg~~~~~gR~dd~ik-~~G~~i~--~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~~v~~~~  285 (307)
                      ++.++|...     +++|+++|+||+||+++ .+|+++.  +.|+|..+.+||.|.+++|++.++..+. +++++..
T Consensus       441 w~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~~~-a~V~~~~  516 (614)
T PRK08180        441 YYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDEIG-LLVFPNL  516 (614)
T ss_pred             ceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCceE-EEEEcCH
Confidence            555666433     35799999999998887 5687655  8899999999999999999998876544 5666544

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=98.71  E-value=3e-09  Score=101.55  Aligned_cols=70  Identities=29%  Similarity=0.406  Sum_probs=55.0

Q ss_pred             EEEEeeecccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccC
Q psy8473         216 VSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSS  285 (307)
Q Consensus       216 ~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~  285 (307)
                      .++.++|...-.+|++.+.||.||+++++|.++++.+||+.|.+||.|.+++|++.+++.   ...+++++..
T Consensus       376 ~~~~tGD~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  448 (503)
T PRK04813        376 PAYHTGDAGYLEDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKE  448 (503)
T ss_pred             eeEECCceEEeeCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecc
Confidence            356666643338899999999999999999999999999999999999999999755432   2233555544

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.70  E-value=7.5e-09  Score=100.16  Aligned_cols=68  Identities=15%  Similarity=0.140  Sum_probs=54.6

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSS  285 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~  285 (307)
                      +.+++. ..+++|+++++||.||+++++|.++++.|||+.|.+||.|.+++|++.++.   +...++++...
T Consensus       401 ~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  472 (542)
T PRK07786        401 FHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRN  472 (542)
T ss_pred             ccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECC
Confidence            444443 346889999999999999999999999999999999999999999976553   33445666543

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=98.70  E-value=1.4e-08  Score=96.64  Aligned_cols=66  Identities=15%  Similarity=0.116  Sum_probs=53.4

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEec
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAP  283 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~  283 (307)
                      +.+++. ..++||+++++||+||++|.+|.+|++.|||+.+.+||.|.++++++.++..   ...+|++.
T Consensus       362 ~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~  431 (483)
T PRK03640        362 FKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVK  431 (483)
T ss_pred             eeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEe
Confidence            445553 4568899999999999999999999999999999999999999998776643   33345553

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.68  E-value=1.7e-08  Score=96.65  Aligned_cols=69  Identities=17%  Similarity=0.100  Sum_probs=55.1

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      +.+++. ..+++|++.+.||.||+++++|.++++.+||+.|.++|.|.+++|++.++.   +...++++...+
T Consensus       397 ~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  469 (521)
T PRK06187        397 LHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPG  469 (521)
T ss_pred             eeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCC
Confidence            444443 446889999999999999999999999999999999999999999976653   333446665544

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=98.67  E-value=1.4e-08  Score=98.24  Aligned_cols=69  Identities=12%  Similarity=0.103  Sum_probs=55.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~  285 (307)
                      ++.+++. ..+++|+++++||.||+++.+|.++++.+||+.|.+||.|.+++|++.++..   ...+|++...
T Consensus       411 ~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~  483 (547)
T PRK06087        411 WYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKA  483 (547)
T ss_pred             CcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECC
Confidence            3445553 3468899999999999999999999999999999999999999999876543   3334665543

>PLN03051 acyl-activating enzyme; Provisional

Probab=98.62  E-value=2.1e-08  Score=96.19  Aligned_cols=70  Identities=14%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcc-cccccccccccccccc----ccceEE---eccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK-ISEVDKLSVLCYKPGE----VDQIWE---APSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~-~p~V~~~~vv~~~~~~----~~~~~v---~~~~~  286 (307)
                      ++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+ ||+|.+++|++.++..    ...+|+   +++.+
T Consensus       358 ~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~  436 (499)
T PLN03051        358 LRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKG  436 (499)
T ss_pred             eeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceeccc
Confidence            3455554 457899999999999999999999999999999986 9999999999877643    344576   55544

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.59  E-value=6.4e-09  Score=101.01  Aligned_cols=59  Identities=14%  Similarity=0.107  Sum_probs=50.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE  275 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~  275 (307)
                      ++.+++. ..+.+|+++++||.||+++++|.++++.+||+.|.+||.|.+++|++.++..
T Consensus       433 ~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~  492 (560)
T PRK08974        433 WLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEV  492 (560)
T ss_pred             CcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCC
Confidence            3445554 3457899999999999999999999999999999999999999999876543

>KOG1179|consensus

Probab=98.55  E-value=4.7e-08  Score=91.16  Aligned_cols=73  Identities=19%  Similarity=0.225  Sum_probs=58.1

Q ss_pred             ceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccc----cccccceEEeccCC
Q psy8473         214 DQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYK----PGEVDQIWEAPSSA  286 (307)
Q Consensus       214 ~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~----~~~~~~~~v~~~~~  286 (307)
                      +...+.++|. ..++.|+++|.+|.-|.+...|+||+..|||+.|.....++++.|.++.    +|....+-++..+.
T Consensus       486 GD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~  563 (649)
T KOG1179|consen  486 GDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPT  563 (649)
T ss_pred             CcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCc
Confidence            4455666665 4578899999999999999999999999999999999999999998643    34455555554443

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.53  E-value=1.2e-08  Score=100.63  Aligned_cols=92  Identities=11%  Similarity=0.011  Sum_probs=68.6

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCC--------------------CcceEEEEeeecccCccccccccccccccc
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG--------------------EVDQVSEVTSEEIRGVDDILLYEGRTDSQV  241 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~--------------------~~~~~~~~~~~~~~~~dg~~~~~gR~dd~i  241 (307)
                      |..+..+++++++.+.|.+...+.......                    .....++.++|.....||+++|+||.||+|
T Consensus       410 g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~dG~l~i~GR~~d~I  489 (631)
T PRK07769        410 ASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYFDGELYITGRVKDLV  489 (631)
T ss_pred             CcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEECCEEEEEcccccEE
Confidence            455666777778888887776654311100                    011246677776554699999999999999


Q ss_pred             ccCCcccchhhHHHHHcc-cccccc--cccccccc
Q psy8473         242 KIRGNRVDLSEVEAALSK-ISEVDK--LSVLCYKP  273 (307)
Q Consensus       242 k~~G~~i~~~eIe~~L~~-~p~V~~--~~vv~~~~  273 (307)
                      |++|+||+|.|||+.|.+ ||.|.+  ++|++.++
T Consensus       490 k~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d  524 (631)
T PRK07769        490 IIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPA  524 (631)
T ss_pred             EECCeeeCHHHHHHHHHhccccccCCcEEEEEecc
Confidence            999999999999999986 899998  78877666

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=98.53  E-value=2e-08  Score=93.27  Aligned_cols=52  Identities=40%  Similarity=0.435  Sum_probs=45.8

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSV  268 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~v  268 (307)
                      ++.++|. ..+++|+++++||.||+++++|+++++.|||+.+..||.|.+++|
T Consensus       356 ~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       356 LYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             EEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            4555554 446789999999999999999999999999999999999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07868 acyl-CoA synthetase; Validated

Probab=98.48  E-value=1.2e-07  Score=98.15  Aligned_cols=73  Identities=18%  Similarity=0.056  Sum_probs=59.9

Q ss_pred             eEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc--ccceEEeccCCC
Q psy8473         215 QVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE--VDQIWEAPSSAG  287 (307)
Q Consensus       215 ~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~--~~~~~v~~~~~~  287 (307)
                      ..++.++|. ..++||+++|+||+|||||++|.+|+|.|||+.|.+||+|.+++|++.+++.  ...+|++++++.
T Consensus       835 dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~  910 (994)
T PRK07868        835 DTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGA  910 (994)
T ss_pred             CEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCC
Confidence            345666665 4579999999999999999999999999999999999999999999887654  334477766544

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=98.47  E-value=2.3e-08  Score=96.51  Aligned_cols=88  Identities=16%  Similarity=0.039  Sum_probs=63.3

Q ss_pred             echhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeecccCcccccccccccccccccCCcccchhhHHHHHccccccc
Q psy8473         185 VDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVD  264 (307)
Q Consensus       185 v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~  264 (307)
                      +.++++++++.+.|.+...+.....  .....++.++|.....+|+++|+||+||+||++|+||+|.|||+.|.+||+|.
T Consensus       367 ~~~g~~GEl~v~g~~~~~GY~~~~~--~~~~~~~~TGDl~~~~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~  444 (525)
T PRK05851        367 VAGREIGEIEIRGASMMSGYLGQAP--IDPDDWFPTGDLGYLVDGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVR  444 (525)
T ss_pred             CCCCCeEEEEEecCchhhccccCCc--cCCCCceeccceEEEECCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcc
Confidence            3444555555555655544332111  11123566666544458999999999999999999999999999999999999


Q ss_pred             cccccccccc
Q psy8473         265 KLSVLCYKPG  274 (307)
Q Consensus       265 ~~~vv~~~~~  274 (307)
                      +++|++.++.
T Consensus       445 ~~~vv~~~~~  454 (525)
T PRK05851        445 EGAVVAVGTG  454 (525)
T ss_pred             cceEEEEEec
Confidence            9999976653

>PTZ00297 pantothenate kinase; Provisional

Probab=98.38  E-value=1.1e-06  Score=92.88  Aligned_cols=58  Identities=14%  Similarity=-0.017  Sum_probs=49.2

Q ss_pred             ccCccccccccccccccccc-CCcccchhhHHHHHccccccccccccccccccccceEEe
Q psy8473         224 IRGVDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEA  282 (307)
Q Consensus       224 ~~~~dg~~~~~gR~dd~ik~-~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~~v~  282 (307)
                      .+.+||++.++||+||++|. +|++|+|..||..+.++|-|.++.|++.....+.+ .++
T Consensus       845 gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~lvA-LVv  903 (1452)
T PTZ00297        845 QWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRPIIA-IVS  903 (1452)
T ss_pred             cCccCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCceEE-EEE
Confidence            45589999999999999997 58999999999999999999999999876555444 444

>KOG1178|consensus

Probab=98.36  E-value=2.1e-06  Score=86.82  Aligned_cols=67  Identities=33%  Similarity=0.485  Sum_probs=58.7

Q ss_pred             cccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         151 YRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       151 ~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .++.|+|||.|+. .+|.+.+.||.+++||.+|.++.+++++..+..+|.|.++.+....+...++.+
T Consensus       452 ~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l  519 (1032)
T KOG1178|consen  452 KARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTL  519 (1032)
T ss_pred             hhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceE
Confidence            3567999999988 799999999999999999999999999999999999999998877666544443

>PRK13390 acyl-CoA synthetase; Provisional

Probab=98.30  E-value=1.1e-07  Score=91.05  Aligned_cols=70  Identities=16%  Similarity=0.064  Sum_probs=56.6

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      ++.++|. ..++||++++.||.||+++++|.+|+|.|||+.|.+||.|.+++|++.++..   ...+++++..+
T Consensus       380 w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~  453 (501)
T PRK13390        380 WTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEG  453 (501)
T ss_pred             eEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCC
Confidence            3344553 4578999999999999999999999999999999999999999999877643   33446665543

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=98.29  E-value=9.8e-08  Score=93.89  Aligned_cols=105  Identities=15%  Similarity=0.071  Sum_probs=71.5

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCC-------------C--------cceEEEEeeecccCcccccccccccccc
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG-------------E--------VDQVSEVTSEEIRGVDDILLYEGRTDSQ  240 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~-------------~--------~~~~~~~~~~~~~~~dg~~~~~gR~dd~  240 (307)
                      |..+.+++.++++.+.|.+...+.......             .        .+..++.++|.....||+++|+||+||+
T Consensus       421 g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~dG~l~i~GR~~d~  500 (612)
T PRK12476        421 GAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYLDGELYITGRIADL  500 (612)
T ss_pred             CcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeECCEEEEEeccCcE
Confidence            556666667777777776665443211100             0        0123666777654469999999999999


Q ss_pred             cccCCcccchhhHHHHHcc-cccccc--cccccccccc--ccceEEeccCC
Q psy8473         241 VKIRGNRVDLSEVEAALSK-ISEVDK--LSVLCYKPGE--VDQIWEAPSSA  286 (307)
Q Consensus       241 ik~~G~~i~~~eIe~~L~~-~p~V~~--~~vv~~~~~~--~~~~~v~~~~~  286 (307)
                      ||++|+||+|.|||+.|.+ ||.|.+  ++|++.++..  ...++++..++
T Consensus       501 I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~  551 (612)
T PRK12476        501 IVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAG  551 (612)
T ss_pred             EEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCC
Confidence            9999999999999999985 899999  5556655543  33446665543

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=98.27  E-value=5.8e-07  Score=88.68  Aligned_cols=70  Identities=26%  Similarity=0.398  Sum_probs=57.5

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      +.++|. ..++||+++++||.||+||++|+||++.|||+.|.+||+|.+++|++.++.   +...+|++.+.+.
T Consensus       475 ~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~  548 (629)
T PRK10524        475 YSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSD  548 (629)
T ss_pred             EEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCC
Confidence            444443 346899999999999999999999999999999999999999999987765   3444577776543

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.13  E-value=5.7e-07  Score=87.79  Aligned_cols=73  Identities=14%  Similarity=0.090  Sum_probs=58.7

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCCCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSAGST  289 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~~~~  289 (307)
                      ++.++|. ..++||+++++||.||+++.+|.+|++.|||+.|.+||.|.+++|++.++..   ...++++..++...
T Consensus       431 ~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~  507 (576)
T PRK05620        431 WLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEP  507 (576)
T ss_pred             cEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCc
Confidence            4455554 4468999999999999999999999999999999999999999999877644   34446666555433

>PRK09192 acyl-CoA synthetase; Validated

Probab=98.10  E-value=6.9e-07  Score=87.26  Aligned_cols=58  Identities=16%  Similarity=0.121  Sum_probs=49.5

Q ss_pred             EEEeeecccCcccccccccccccccccCCcccchhhHHHHHccccccc--cccccccccc
Q psy8473         217 SEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVD--KLSVLCYKPG  274 (307)
Q Consensus       217 ~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~--~~~vv~~~~~  274 (307)
                      ++.+++....++|+++|+||+||+|+++|++|++.|||+.|.+||.|.  +++|++.+++
T Consensus       440 w~~TGDlg~~~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~  499 (579)
T PRK09192        440 WLDTGDLGYLLDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQE  499 (579)
T ss_pred             eeeccceeeEECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccC
Confidence            455565544489999999999999999999999999999999999998  7888876654

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=98.09  E-value=3.2e-05  Score=73.21  Aligned_cols=105  Identities=19%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             CCcccCCCCCcccccceEEEEeCCCCccccccc------------ceecCCcceEEEEEe-eeccccCCccccccccEEe
Q psy8473          90 GESMLHADNNNEQSNDIAIVLYTSGSTGIPKEY------------RRMYKTGDYGRIVDD-IHRCWSSGDRAIKYRRMYK  156 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~tsGttG~Pkg~------------~~~~~~g~~Gel~v~-v~~gy~~~~~~~~~~~~~~  156 (307)
                      ++.+++.||+||++.  +....  ...|.....            ..+++.|..|||++. +....  ..+. ..---|+
T Consensus       229 g~~v~~~YG~TE~~~--~~~c~--~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~--~r~~-~PliRYr  301 (445)
T TIGR03335       229 GCEVYNTYGSTEGTM--CGECQ--AVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPG--ERCG-SLLINYD  301 (445)
T ss_pred             CCcEEecCChhhhhh--eEEec--CCCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCC--ccCC-ceEEEee
Confidence            567899999999752  22111  122333211            114678899999997 33210  0000 0112389


Q ss_pred             ecCeEEE-E-C----C----eEEEeeecCCeEEECCeeechhHHHHHHhcC---CCcc
Q psy8473         157 TGDYGRI-V-D----D----ILLYEGRTDSQVKIRGNRVDLSEVEAALSKL---SEVD  201 (307)
Q Consensus       157 tGD~g~~-~-~----g----~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~---p~V~  201 (307)
                      |||++++ . +    |    .+...||.+|+++++|.+++|.+||+++.+.   +++.
T Consensus       302 tgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~  359 (445)
T TIGR03335       302 TEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLT  359 (445)
T ss_pred             cCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCC
Confidence            9999886 3 2    2    1334699999999999999999999999994   5554

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=98.06  E-value=2.6e-06  Score=79.05  Aligned_cols=61  Identities=18%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccccccceEEeccCC
Q psy8473         224 IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSA  286 (307)
Q Consensus       224 ~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~~v~~~~~  286 (307)
                      .++++|++.|+||+||+||++|++|+|.|||+.|.+||.|.+++|..  .++...+|++++++
T Consensus       284 ~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~--~g~~~~a~vv~~~~  344 (386)
T TIGR02372       284 AWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL--DGRRLKAFIVVAED  344 (386)
T ss_pred             EEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc--CCceEEEEEEECCC
Confidence            45788999999999999999999999999999999999999998864  34455667776543

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PLN03102 acyl-activating enzyme; Provisional

Probab=98.04  E-value=3.2e-06  Score=82.68  Aligned_cols=71  Identities=17%  Similarity=0.121  Sum_probs=57.6

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      ++.++|. ..++||+++++||.||+|+++|++|++.|||..|.+||.|.+++|++.++.   +...+|+++..+.
T Consensus       421 w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~  495 (579)
T PLN03102        421 WLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGE  495 (579)
T ss_pred             ceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcc
Confidence            3445553 447899999999999999999999999999999999999999999988764   3444577665443

>PTZ00297 pantothenate kinase; Provisional

Probab=98.02  E-value=7.5e-06  Score=86.68  Aligned_cols=109  Identities=14%  Similarity=-0.016  Sum_probs=72.9

Q ss_pred             CCcccCCCCCcccccceEEEEeCCCCcccccccce-ecC-C------cceEEEEEeeeccccCCcccc--ccccEEeecC
Q psy8473          90 GESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYRR-MYK-T------GDYGRIVDDIHRCWSSGDRAI--KYRRMYKTGD  159 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~tsGttG~Pkg~~~-~~~-~------g~~Gel~v~v~~gy~~~~~~~--~~~~~~~tGD  159 (307)
                      ++.+..+||+||.......-.+++|  |.|.+... .+. .      ...|||+++    |+++++..  ..++|+    
T Consensus       778 ~i~i~~g~glTE~~~~~~~~~~~~~--G~PlpgvEvKI~~~~E~~~~~~~GEIlvr----~~kdpe~T~e~~~gW~----  847 (1452)
T PTZ00297        778 HISVCYVPCLREVFFLPSEGVFCVD--GTPAPSLQVDLEPFDEPSDGAGIGQLVLA----KKGEPRRTLPIAAQWK----  847 (1452)
T ss_pred             CceEEEecceEEeeeecCCCCcccC--CeecCceEEEEcccccccCCCCCCeEEEE----ECCChHHHHHhhCcCc----
Confidence            3456778999994211000011122  77765433 111 0      123888874    56766621  113443    


Q ss_pred             eEEEECCeEEEeeecCCeEEE-CCeeechhHHHHHHhcCCCcceEEEEEeeCCC
Q psy8473         160 YGRIVDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE  212 (307)
Q Consensus       160 ~g~~~~g~l~~~GR~~~~i~~-~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~  212 (307)
                          ++|+|.|+||+++.+|. +|++|+|+.||+.+..+|.|.+++|++.+...
T Consensus       848 ----~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~  897 (1452)
T PTZ00297        848 ----RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP  897 (1452)
T ss_pred             ----cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc
Confidence                58999999999999998 89999999999999999999999999876543

>PRK05850 acyl-CoA synthetase; Validated

Probab=98.00  E-value=8.7e-07  Score=86.47  Aligned_cols=71  Identities=14%  Similarity=0.062  Sum_probs=55.1

Q ss_pred             EEEEeeecccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc--cccceEEeccCCC
Q psy8473         216 VSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG--EVDQIWEAPSSAG  287 (307)
Q Consensus       216 ~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~--~~~~~~v~~~~~~  287 (307)
                      .++.+++....+||+++++||+||+||++|++|++.|||+.|.+||.+. ++|+..++.  +...++++++...
T Consensus       437 ~w~~TGDl~~~~~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~~~~~~~a~v~~~~~~  509 (578)
T PRK05850        437 PWLRTGDLGFISEGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAISVPDDGTEKLVAIIELKKRG  509 (578)
T ss_pred             CeeeccceeeEECCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEEEecCCCceEEEEEEEecccc
Confidence            3666777655558999999999999999999999999999999999865 666666543  3344566665543

>PRK06164 acyl-CoA synthetase; Validated

Probab=97.99  E-value=1.8e-06  Score=83.45  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=68.0

Q ss_pred             eechhHHHHHHhcCCCcceEEEEEeeCCC----cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHc
Q psy8473         184 RVDLSEVEAALSKLSEVDKLSVLCYKPGE----VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALS  258 (307)
Q Consensus       184 ~v~~~eiE~~l~~~p~V~~~~v~~~~~~~----~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~  258 (307)
                      .+..+++++++.+.+.+...+.- .+...    ....++.++|. ..+++|++.++||.||+++++|.+++|.|||+.|.
T Consensus       371 ~~~~g~~Gel~v~g~~~~~gY~~-~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~  449 (540)
T PRK06164        371 LLPDGESGEIEIRAPSLMRGYLD-NPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALE  449 (540)
T ss_pred             CCCCCCeeEEEEecccccccccC-CchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHH
Confidence            34444555555555555443321 11110    01224556664 45789999999999999999999999999999999


Q ss_pred             ccccccccccccccccc--ccceEEeccCC
Q psy8473         259 KISEVDKLSVLCYKPGE--VDQIWEAPSSA  286 (307)
Q Consensus       259 ~~p~V~~~~vv~~~~~~--~~~~~v~~~~~  286 (307)
                      +||.|.+++|++.+...  ...+++++.++
T Consensus       450 ~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~  479 (540)
T PRK06164        450 ALPGVAAAQVVGATRDGKTVPVAFVIPTDG  479 (540)
T ss_pred             hCCCceeEEEEecCCCCceeEEEEEEeCCC
Confidence            99999999999765322  23346665443

>PRK13388 acyl-CoA synthetase; Provisional

Probab=97.93  E-value=7.6e-06  Score=79.29  Aligned_cols=71  Identities=13%  Similarity=0.212  Sum_probs=56.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~~  287 (307)
                      ++.++|. ..++||+++++||+||+||++|++|++.|||+.|.+||.|.+++|++.++..   ...+++++..+.
T Consensus       381 ~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~  455 (540)
T PRK13388        381 MYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGA  455 (540)
T ss_pred             ceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCC
Confidence            3445543 3468899999999999999999999999999999999999999999877643   333455554443

>PRK08308 acyl-CoA synthetase; Validated

Probab=97.90  E-value=8.2e-06  Score=76.27  Aligned_cols=52  Identities=23%  Similarity=0.272  Sum_probs=47.2

Q ss_pred             ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc
Q psy8473         224 IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE  275 (307)
Q Consensus       224 ~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~  275 (307)
                      ..++||++.++||.||++|++|++|+|.|||..|.+||.|.+++|++.++..
T Consensus       300 ~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~  351 (414)
T PRK08308        300 YKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPV  351 (414)
T ss_pred             EECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCC
Confidence            3468899999999999999999999999999999999999999998776643

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.89  E-value=2.3e-06  Score=83.20  Aligned_cols=69  Identities=16%  Similarity=0.136  Sum_probs=55.7

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      +.+++. ..+++|++.++||.||+++++|.+|+|.|||+.|.+||.|.+++|++.++.   +...+|++..++
T Consensus       433 ~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~  505 (563)
T PRK06710        433 LHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEG  505 (563)
T ss_pred             ccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCC
Confidence            444443 446889999999999999999999999999999999999999999987663   334456665544

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=97.86  E-value=5e-06  Score=80.50  Aligned_cols=71  Identities=11%  Similarity=0.021  Sum_probs=56.9

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      ++.+++. ..+++|++.++||.||+++++|.++++.|||..+.+||.|.+++|++.++.   +...+++++.++.
T Consensus       411 ~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  485 (542)
T PRK06018        411 FFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGE  485 (542)
T ss_pred             EEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCC
Confidence            3455553 446889999999999999999999999999999999999999999986653   3444566665543

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=97.86  E-value=0.00017  Score=66.85  Aligned_cols=104  Identities=24%  Similarity=0.194  Sum_probs=73.3

Q ss_pred             CCCcccCCCCCcccccceEEEEeCCCCcccccccc------------eecCCcceEEEEEe-eeccccCCccccccccEE
Q psy8473          89 PGESMLHADNNNEQSNDIAIVLYTSGSTGIPKEYR------------RMYKTGDYGRIVDD-IHRCWSSGDRAIKYRRMY  155 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~~tsGttG~Pkg~~------------~~~~~g~~Gel~v~-v~~gy~~~~~~~~~~~~~  155 (307)
                      .++..++.||.||....- ....++.. |...-..            .+++.|..|||.+. +....       ..---|
T Consensus       234 ~g~~~~diYGltE~~g~g-~~eC~~~~-glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~~~~-------~PlIRY  304 (438)
T COG1541         234 FGCKAFDIYGLTEGFGPG-AGECTERN-GLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLTKEG-------MPLIRY  304 (438)
T ss_pred             hCCceeeccccccccCCc-cccccccc-CCCcchhhceeeeecCCcCccCCCCCeeEEEEEeccccC-------cceEEE
Confidence            466679999999974332 22333443 5544211            15788889999997 33221       011238


Q ss_pred             eecCeEEE-E----CC-----eEEEeeecCCeEEECCeeechhHHHHHHhcCCCcc
Q psy8473         156 KTGDYGRI-V----DD-----ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVD  201 (307)
Q Consensus       156 ~tGD~g~~-~----~g-----~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~  201 (307)
                      +|||++.+ +    .|     ...+.||.+|++.+.|.+|.|..+|..+.+.+.+.
T Consensus       305 rtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~  360 (438)
T COG1541         305 RTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVT  360 (438)
T ss_pred             EcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCC
Confidence            99999998 3    22     22578999999999999999999999999999887

>PRK09188 serine/threonine protein kinase; Provisional

Probab=97.85  E-value=1e-05  Score=74.22  Aligned_cols=63  Identities=10%  Similarity=0.121  Sum_probs=51.5

Q ss_pred             EEEEeeeccc--CcccccccccccccccccCC---cccchhhHHHHHcccccccccccccccccc---ccceEEecc
Q psy8473         216 VSEVTSEEIR--GVDDILLYEGRTDSQVKIRG---NRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPS  284 (307)
Q Consensus       216 ~~~~~~~~~~--~~dg~~~~~gR~dd~ik~~G---~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~  284 (307)
                      .++.++|...  ++||+++|+||.|     +|   +||+|. ||+.|.+||+|.+|+|++.++..   ...+|+++.
T Consensus       209 gW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~  279 (365)
T PRK09188        209 IWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE  279 (365)
T ss_pred             cEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence            4666777654  5899999999998     78   799999 99999999999999999887644   444577654

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=97.83  E-value=1.6e-06  Score=84.17  Aligned_cols=57  Identities=12%  Similarity=0.120  Sum_probs=49.6

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG  274 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~  274 (307)
                      +.++|. ..+++|++.++||.||+++++|.+|++.|||..|..||.|.+++|++.++.
T Consensus       439 ~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~  496 (560)
T PRK08751        439 LHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDE  496 (560)
T ss_pred             ccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCC
Confidence            445543 446889999999999999999999999999999999999999999987653

>PRK08162 acyl-CoA synthetase; Validated

Probab=97.76  E-value=1.7e-05  Score=76.85  Aligned_cols=67  Identities=18%  Similarity=0.162  Sum_probs=54.9

Q ss_pred             eeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         220 TSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       220 ~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      ++|. ..+++|+++++||.||+++++|.++++.|||..|.+||.|.+++|++.++.   +...+|+++..+
T Consensus       420 TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~  490 (545)
T PRK08162        420 TGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDG  490 (545)
T ss_pred             cCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCC
Confidence            4443 346889999999999999999999999999999999999999999976543   444557776544

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.76  E-value=4.7e-06  Score=79.79  Aligned_cols=70  Identities=16%  Similarity=0.134  Sum_probs=56.1

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      ++.+++. ..+++|++.++||.||+++++|.++++.|||..|.+||.|.+++|++..+..   ...+|++++.+
T Consensus       370 ~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  443 (502)
T PRK08276        370 WVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADG  443 (502)
T ss_pred             ceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCC
Confidence            3445553 3468899999999999999999999999999999999999999999776543   34456666544

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=97.75  E-value=6e-06  Score=79.92  Aligned_cols=69  Identities=13%  Similarity=0.102  Sum_probs=55.1

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      +.++|. ..+++|++.++||.||++|++|.++++.|||..+.+||.|.+++|++.++..   ...+++++..+
T Consensus       423 ~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  495 (541)
T TIGR03205       423 FLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPG  495 (541)
T ss_pred             cccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCC
Confidence            344443 3468899999999999999999999999999999999999999999876543   33446665543

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PLN02479 acetate-CoA ligase

Probab=97.74  E-value=1.9e-05  Score=76.91  Aligned_cols=69  Identities=13%  Similarity=0.110  Sum_probs=55.8

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      +.++|. ..+++|+++|+||.||+++++|++|++.|||..|.+||.|.+++|++.++..   ...+|+++..+
T Consensus       432 ~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  504 (567)
T PLN02479        432 FHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPG  504 (567)
T ss_pred             eecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCc
Confidence            344443 4568899999999999999999999999999999999999999999876543   44456665544

>PRK07798 acyl-CoA synthetase; Validated

Probab=97.66  E-value=4.3e-05  Score=73.47  Aligned_cols=70  Identities=17%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~  286 (307)
                      ++.+++. ..+++|++.++||.||+++.+|.+|++.|||+.|.+||.|.+++|++.++..   ...+++++..+
T Consensus       409 ~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  482 (533)
T PRK07798        409 YAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREG  482 (533)
T ss_pred             eEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCC
Confidence            3344443 3467999999999999999999999999999999999999999999876543   33345555443

>PRK12582 acyl-CoA synthetase; Provisional

Probab=97.61  E-value=1.4e-05  Score=78.96  Aligned_cols=63  Identities=14%  Similarity=0.219  Sum_probs=49.9

Q ss_pred             EEEeeeccc--C---ccccccccccccccccc-CCcccchhhH--HHHHccccccccccccccccccccce
Q psy8473         217 SEVTSEEIR--G---VDDILLYEGRTDSQVKI-RGNRVDLSEV--EAALSKISEVDKLSVLCYKPGEVDQI  279 (307)
Q Consensus       217 ~~~~~~~~~--~---~dg~~~~~gR~dd~ik~-~G~~i~~~eI--e~~L~~~p~V~~~~vv~~~~~~~~~~  279 (307)
                      ++.++|...  +   ++|++.|+||+||++++ +|++|.+.+|  |..+.+||.|.+++|++.++.....+
T Consensus       453 w~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~l  523 (624)
T PRK12582        453 FYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLL  523 (624)
T ss_pred             CccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEEE
Confidence            455666432  2   46899999999999995 7999998888  46889999999999999877655554

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=97.56  E-value=5.6e-05  Score=70.82  Aligned_cols=61  Identities=20%  Similarity=0.220  Sum_probs=51.5

Q ss_pred             cCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccC
Q psy8473         225 RGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSS  285 (307)
Q Consensus       225 ~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~  285 (307)
                      .++||++++.||.||++|++|.++++.+||+.|.+||.|.+++|+..++..   ...++++...
T Consensus       330 ~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  393 (436)
T TIGR01923       330 LDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES  393 (436)
T ss_pred             EcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECC
Confidence            457899999999999999999999999999999999999999999876643   3345666543

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.53  E-value=1.6e-05  Score=76.93  Aligned_cols=55  Identities=13%  Similarity=0.150  Sum_probs=47.0

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCY  271 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~  271 (307)
                      ++.+++. ..+++|+++++||.||+++++|.++++.|||..|.+||+|.+++|+..
T Consensus       415 ~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~  470 (545)
T PRK07768        415 WLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAV  470 (545)
T ss_pred             eeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEE
Confidence            4455554 446789999999999999999999999999999999999999877743

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=97.49  E-value=6.7e-05  Score=71.97  Aligned_cols=63  Identities=25%  Similarity=0.268  Sum_probs=51.7

Q ss_pred             cCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCC
Q psy8473         225 RGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       225 ~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      ..++|++.++||.||+++++|.++++.+||+.|.+||.|.++++++.++.   +...+|+++..+.
T Consensus       394 ~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~  459 (508)
T TIGR02262       394 RNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQ  459 (508)
T ss_pred             EcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCC
Confidence            35789999999999999999999999999999999999999999986542   2333566655443

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=96.52  E-value=0.0033  Score=59.03  Aligned_cols=40  Identities=25%  Similarity=0.364  Sum_probs=35.7

Q ss_pred             ccccccccccccccCCcccchhhHHHHHccccccc-ccccc
Q psy8473         230 ILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVD-KLSVL  269 (307)
Q Consensus       230 ~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~-~~~vv  269 (307)
                      ++.+.||.||+++++|.+|+|.|||..|.+||+|. ...+.
T Consensus       310 ~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~  350 (422)
T TIGR02155       310 MDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLE  350 (422)
T ss_pred             cccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEE
Confidence            57899999999999999999999999999999998 44443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1178|consensus

Probab=96.09  E-value=0.003  Score=64.60  Aligned_cols=72  Identities=22%  Similarity=0.246  Sum_probs=56.8

Q ss_pred             EEEEeeecc-cCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccccccc---eEEeccCCC
Q psy8473         216 VSEVTSEEI-RGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQ---IWEAPSSAG  287 (307)
Q Consensus       216 ~~~~~~~~~-~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~---~~v~~~~~~  287 (307)
                      +.+.+++.. ...+|-+.+.||.|++||.+|.|+++.||++.+..||.|.++.+....+..+.+   +|++...+.
T Consensus       454 r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~  529 (1032)
T KOG1178|consen  454 RIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGS  529 (1032)
T ss_pred             hcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCC
Confidence            335555543 235889999999999999999999999999999999999999999877655443   377765443

>KOG3628|consensus

Probab=95.89  E-value=0.045  Score=55.74  Aligned_cols=126  Identities=18%  Similarity=0.222  Sum_probs=84.3

Q ss_pred             ecCCcceEEEEEe---eeccccCCcc--------------ccccccEEeecCeEEEE-----C------CeEEEeeecCC
Q psy8473         125 MYKTGDYGRIVDD---IHRCWSSGDR--------------AIKYRRMYKTGDYGRIV-----D------DILLYEGRTDS  176 (307)
Q Consensus       125 ~~~~g~~Gel~v~---v~~gy~~~~~--------------~~~~~~~~~tGD~g~~~-----~------g~l~~~GR~~~  176 (307)
                      |+..|..||+|+.   -..+|+...+              ......|.||||+|.+.     +      .-||++|-.++
T Consensus      1174 pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~E 1253 (1363)
T KOG3628|consen 1174 PCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDE 1253 (1363)
T ss_pred             ccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccc
Confidence            6778889999998   3333443211              22246799999999872     2      25789999999


Q ss_pred             eEEECCeeechhHHHHHHhc-CCCcceEEEEEeeCCCcceEEEEeeecccCcccccccccccccccccCCcccchhhHHH
Q psy8473         177 QVKIRGNRVDLSEVEAALSK-LSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEA  255 (307)
Q Consensus       177 ~i~~~G~~v~~~eiE~~l~~-~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~  255 (307)
                      .+.++|.+-.|.+||..+.+ ||.|..|+++-..    +. +.+..+- .+++..               ..+-|.=+..
T Consensus      1254 tlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~----gl-vVvviE~-~gq~~~---------------~~LvPlIv~~ 1312 (1363)
T KOG3628|consen 1254 TLELNGLRHFPSDIETTVERVHPSIGGCAVFQAT----GL-VVVVIEC-HGQQEL---------------ADLVPLIVNV 1312 (1363)
T ss_pred             eeeecCcccCcchHHHHHHHhcccccceeeEeeC----Ce-EEEEEEe-cCchhH---------------hhhhHHHHHH
Confidence            99999999999999976654 7999988876331    11 2112110 011100               1344666778


Q ss_pred             HHcccccccccccccc
Q psy8473         256 ALSKISEVDKLSVLCY  271 (307)
Q Consensus       256 ~L~~~p~V~~~~vv~~  271 (307)
                      +|.+|--|.+++++..
T Consensus      1313 vL~eH~iI~dvV~fV~ 1328 (1363)
T KOG3628|consen 1313 VLEEHYIILDVVAFVD 1328 (1363)
T ss_pred             HHhhcceEEEEEEEec
Confidence            8999988888877744

>KOG1180|consensus

Probab=94.78  E-value=0.03  Score=53.22  Aligned_cols=73  Identities=25%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             cceEEEEeeec-ccCccccccccccccccccc-CCcccchhhHHHHHccccccccccccccccccccceEEeccC
Q psy8473         213 VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKI-RGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSS  285 (307)
Q Consensus       213 ~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~-~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~~v~~~~  285 (307)
                      .+.+++.++|. ...+||.+.+++|++|.+|. +|+-|++.-||++|+..|-|....|-+.....-.-.+|+++.
T Consensus       512 ~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s~~VaiVVPn~  586 (678)
T KOG1180|consen  512 DGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKSKPVAIVVPNQ  586 (678)
T ss_pred             CCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccceeEEEEcCCc
Confidence            34566666665 46899999999999999997 699999999999999999999888877666555555777654

>KOG1256|consensus

Probab=94.70  E-value=0.035  Score=54.39  Aligned_cols=79  Identities=24%  Similarity=0.259  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHH--hHHHhhhhhhhccCCCC------ccCceecChhhHHHhhhhhhccCCCCCcccCCCCCcccccceE
Q psy8473          36 KKKKKKKKKKKK--KKKKKRRILAKSCENPA------YKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIA  107 (307)
Q Consensus        36 ~~k~~~~~~~~~--~l~~l~~vi~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~yg~te~~~~~a  107 (307)
                      .+|.+++++...  ++|.||.+|.+......      ..|+.+.||+++++++....         .... ....+++++
T Consensus       189 ~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~---------~~~~-~~p~p~d~a  258 (691)
T KOG1256|consen  189 AKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQ---------RKPR-VPPKPDDLA  258 (691)
T ss_pred             HHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhccccc---------CCCC-CCCCccceE
Confidence            456678888877  48999999999876432      34688999999999987411         1111 356789999


Q ss_pred             EEEeCCCCcccccccce
Q psy8473         108 IVLYTSGSTGIPKEYRR  124 (307)
Q Consensus       108 ~~~~tsGttG~Pkg~~~  124 (307)
                      +++|||||||.|||+|+
T Consensus       259 tI~yTSGTTG~PKGVML  275 (691)
T KOG1256|consen  259 TICYTSGTTGNPKGVML  275 (691)
T ss_pred             EEEEcCCCCCCCceEEE
Confidence            99999999999999998

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=94.26  E-value=0.069  Score=36.80  Aligned_cols=29  Identities=17%  Similarity=0.192  Sum_probs=26.0

Q ss_pred             HHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         189 EVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       189 eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      |||+++.++|+|.++++++.+++..+..+
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l   29 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERL   29 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccc
Confidence            78999999999999999999988777666

...

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.22  E-value=0.023  Score=56.28  Aligned_cols=44  Identities=48%  Similarity=0.583  Sum_probs=37.9

Q ss_pred             EEeeecc-cCcccccccccccccccccCCcccchhhHHHHHcccc
Q psy8473         218 EVTSEEI-RGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKIS  261 (307)
Q Consensus       218 ~~~~~~~-~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p  261 (307)
                      +.+++.. +..||.+.|+||.|+|+|++|+||++.|||..+.+||
T Consensus       598 y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         598 YRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             ccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            3444443 4689999999999999999999999999999999886

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=92.89  E-value=0.049  Score=37.55  Aligned_cols=32  Identities=16%  Similarity=0.130  Sum_probs=25.6

Q ss_pred             hHHHHHcccccccccccccccccc---ccceEEec
Q psy8473         252 EVEAALSKISEVDKLSVLCYKPGE---VDQIWEAP  283 (307)
Q Consensus       252 eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~  283 (307)
                      |||+.|.+||+|.+++|++.++..   ...+|+++
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~   35 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL   35 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe
Confidence            799999999999999999887643   33446665

...

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=91.80  E-value=0.098  Score=48.54  Aligned_cols=23  Identities=43%  Similarity=0.652  Sum_probs=20.4

Q ss_pred             cccceEEEEeCCCCcccccccce
Q psy8473         102 QSNDIAIVLYTSGSTGIPKEYRR  124 (307)
Q Consensus       102 ~~~~~a~~~~tsGttG~Pkg~~~  124 (307)
                      .+.++++++|||||||.||++..
T Consensus       153 ~~~~~~~i~~TSGTTG~pK~v~~  175 (417)
T PF00501_consen  153 SPDDPAFILFTSGTTGKPKGVVL  175 (417)
T ss_dssp             TTTSEEEEEEESSSSSSEEEEEE
T ss_pred             CccceeEeecccccccccccccc
Confidence            45789999999999999998776

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=89.13  E-value=0.23  Score=47.09  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=28.7

Q ss_pred             ccccccccccccCCcccchhhHHHHHccccccc
Q psy8473         232 LYEGRTDSQVKIRGNRVDLSEVEAALSKISEVD  264 (307)
Q Consensus       232 ~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~  264 (307)
                      ..+||.|||++++|.|++|.+||++|.+++++.
T Consensus       324 ~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~  356 (445)
T TIGR03335       324 LNPEREAETIWISGVPFNRVDVERAVFQRENMD  356 (445)
T ss_pred             CCCcccCceEEECCEEeCHHHHHHHHhccCCCC
Confidence            446999999999999999999999999964444

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=84.47  E-value=0.79  Score=42.97  Aligned_cols=52  Identities=29%  Similarity=0.415  Sum_probs=40.3

Q ss_pred             cccccccccccccCCcccchhhHHHHHccccccc-cccccccccccccceEEe
Q psy8473         231 LLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVD-KLSVLCYKPGEVDQIWEA  282 (307)
Q Consensus       231 ~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~-~~~vv~~~~~~~~~~~v~  282 (307)
                      ..+.||.|||++.+|.+|.|..||..|.+.+.+. +-.++-...+....+-+.
T Consensus       327 ~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~  379 (438)
T COG1541         327 ERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVR  379 (438)
T ss_pred             cccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEE
Confidence            4678999999999999999999999999999998 444443335555555333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	307
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		4e-07
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		4e-07
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		9e-07
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		8e-04
3ite_A	562	The Third Adenylation Domain Of The Fungal Sidn Non		1e-06
3ite_A	562	The Third Adenylation Domain Of The Fungal Sidn Non		9e-04
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		2e-06
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		5e-05
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		5e-05
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		9e-05
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		6e-04

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE 212
           R YKTGD G + + +L Y GR D Q+K+ G R++L E+E  L   S V+   ++  K GE
Sbjct: 377 RAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGE 436

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE 212
           R YKTGD G + + +L Y GR D Q+K+ G R++L E+E  L   S V+   ++  K GE
Sbjct: 377 RAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGE 436

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 153 RMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLC 207
           RMY+TGD  R   D +L Y GR D QVKIRG RV+  EVEA L     V + +VL 
Sbjct: 446 RMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLA 501

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 225 RGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLC 270
           R  D +L Y GR D QVKIRG RV+  EVEA L     V + +VL 
Sbjct: 456 RRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLA 501

>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 149 IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLS--EVDKLSV 205
           I  R+ Y+TGD  R   D  +L+ GR D QVK+RG R++L EV   +  LS  ++D +++
Sbjct: 400 INGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTL 459
Query: 206 LCYKPGEVDQ--VSEVTSE--EIRG 226
           L   PG   Q  VS V S    +RG
Sbjct: 460 LLNHPGTSKQFLVSFVASSGAAVRG 484

>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKIS--EVDKLSVLCYKPGEVDQI 279
           D  +L+ GR D QVK+RG R++L EV   +  +S  ++D +++L   PG   Q 
Sbjct: 417 DSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQF 470

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYK 209
           ++YKTGD  R + D  + Y GR D+QVKIRG+RV+L EVE+ L K   + + +V  +K
Sbjct: 407 KLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK 464

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 154 MYKTGDYGR-IVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLC 207
           +Y+TGD  R + D  + Y GR D QVKIRG+R++L E+E  L +   V    V+ 
Sbjct: 839 LYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVA 893

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 155 YKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKP 210
           Y+TGD G I D  +  +GR D Q+K+ G R++L E+E  + +   V    V+ Y+P
Sbjct: 378 YRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQP 433

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 153 RMYKTGDY-GRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLC--YK 209
           R Y+TGD    + D    YEGR D Q+K+RG R++LS++E A+ +  +V    V    +K
Sbjct: 415 RYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFK 474
Query: 210 PGEVDQVSEVTSEE 223
           PG++  V    + E
Sbjct: 475 PGDLRLVCAYVARE 488

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 149 IKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSK 196
            K +  Y TGD G +  D+ILLY GR D Q+K  G R++L +V   L++
Sbjct: 376 FKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	9e-15
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	8e-09
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-14
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-08
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-14
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	4e-08
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	6e-04
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	4e-14
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-13
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-08
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-13
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-08
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	3e-13
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	3e-08
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	2e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	3e-04
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	6e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	6e-04

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 73.7 bits (182), Expect = 9e-15
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
           R Y+TGD  R  +   L + GR D QVK+ G R+DL  +E    +   +
Sbjct: 396 RAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGI 444

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 55.6 bits (135), Expect = 8e-09
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 231 LLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
           L + GR D QVK+ G R+DL  +E    +   +
Sbjct: 412 LRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGI 444

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
             Y TGD G + +D ILLY GR D Q+K  G R++L +V   L++   V
Sbjct: 380 PAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV 428

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 231 LLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
           LLY GR D Q+K  G R++L +V   L++   V
Sbjct: 396 LLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV 428

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
           +MY+TGD  R+  D  +L+ GR D QVK+RG R++L EV   +  LS  
Sbjct: 404 KMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPT 452

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
           D  +L+ GR D QVK+RG R++L EV   +  +S  
Sbjct: 417 DSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPT 452

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 7/58 (12%)

Query: 63  PAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLYTSGSTGIPK 120
                  VL       +    + +     +    +         A +LYTSGSTG PK
Sbjct: 141 ELPPETKVLDTKNQSFIENLSTQDTSDILNNYPENL-------DAYLLYTSGSTGTPK 191

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
            +Y+TGD  R + D  + Y GR D QVKIRG+R++L E+E  L +   V
Sbjct: 838 TLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGV 886

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 233 YEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
           Y GR D QVKIRG+R++L E+E  L +   V
Sbjct: 856 YAGRIDDQVKIRGHRIELEEIEKQLQEYPGV 886

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 69.8 bits (172), Expect = 1e-13
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
             Y+TGD G I D  +  +GR D Q+K+ G R++L E+E  + +   V
Sbjct: 376 WAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYV 423

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 233 YEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
            +GR D Q+K+ G R++L E+E  + +   V
Sbjct: 393 CQGRLDFQIKLHGYRMELEEIEFHVRQSQYV 423

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 153 RMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
           R YKTGD G + + +L Y GR D Q+K+ G R++L E+E  L   S V
Sbjct: 377 RAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYV 424

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 233 YEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
           Y GR D Q+K+ G R++L E+E  L   S V
Sbjct: 394 YNGRLDFQIKLHGYRMELEEIEHHLRACSYV 424

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
           ++YKTGD  R + D  + Y GR D+QVKIRG+RV+L EVE+ L K   +
Sbjct: 407 KLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYI 455

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 233 YEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
           Y GR D+QVKIRG+RV+L EVE+ L K   +
Sbjct: 425 YLGRIDNQVKIRGHRVELEEVESILLKHMYI 455

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 4  NLTISEHHFDKVIIPAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKK 52
           L I +    +   P P  R+K +  K   K KK K ++KKKK+  K K
Sbjct: 51 ALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 18  PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRI 55
           P P ++++A K+  K KK K ++KKKK+  K K  +R 
Sbjct: 67  PPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQ 104

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 102 QSNDIAIVLYTSGSTGIPK 120
           +    A + YTSGST  P 
Sbjct: 181 EYPSTAYLQYTSGSTRTPA 199

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 18  PAPFEREKAKKKKNKKKKKKKKKKKKKKKKKKKKKRRILAKSCEN 62
               +++  K    K KK +K KK  +KKK K  KR       EN
Sbjct: 59  QKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.87
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.86
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.85
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.85
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.84
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.83
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.83
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.83
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.82
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.82
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.82
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.82
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.81
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.81
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.81
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.81
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.81
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.8
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.8
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.8
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.8
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.79
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.78
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.77
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.77
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.76
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.75
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.75
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.75
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.73
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.71
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.52
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.52
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.51
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.5
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.5
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.47
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.45
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.45
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.44
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.44
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.44
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.43
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.43
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.43
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.42
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.42
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.39
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.38
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.36
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.35
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.35
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.34
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.34
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.34
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.32
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.32
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.29
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.26
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.21
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.21
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.17
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	98.7
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	98.63
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	98.6
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.53
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	98.48
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.23
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.19
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.09
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	98.06
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	97.99
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	97.99
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	97.25
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	96.22
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	94.89
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	94.76
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	94.31
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	93.3

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.87  E-value=7.6e-22  Score=187.61  Aligned_cols=117  Identities=20%  Similarity=0.248  Sum_probs=96.1

Q ss_pred             ecCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473         125 MYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK  196 (307)
Q Consensus       125 ~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~  196 (307)
                      +++.|..|||+++   ++.|||++++    ....++||+|||+|++ ++|+++++||.||+||++|++|+|.|||+.+.+
T Consensus       341 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~  420 (503)
T 4fuq_A          341 ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA  420 (503)
T ss_dssp             BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHT
T ss_pred             CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence            4567788999999   9999999988    3334789999999999 599999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCcceEEEEeeecccCcccccccccccccccccCCcccchhhHHHHHccc
Q psy8473         197 LSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       197 ~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                      +|+|.+++|++.+++..+..+..             ++      +...|..++..++.+.|+++
T Consensus       421 ~p~V~~a~vv~~~~~~~~~~~~a-------------~v------~~~~~~~~~~~~l~~~l~~~  465 (503)
T 4fuq_A          421 MPGVVESAVIGVPHADFGEGVTA-------------VV------VRDKGATIDEAQVLHGLDGQ  465 (503)
T ss_dssp             STTEEEEEEEEEEETTTEEEEEE-------------EE------EECTTCCCCHHHHHHHHBTT
T ss_pred             CCCeeEEEEEEeEchhcCceeEE-------------EE------EeCCCCCCCHHHHHHHHHhh
Confidence            99999999999988776655522             22      11224456677888888765

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.86  E-value=8.4e-22  Score=188.71  Aligned_cols=154  Identities=23%  Similarity=0.286  Sum_probs=123.7

Q ss_pred             CCCCcccCCCCCcccccceEEEE--------eCCCCcccccccc----------eecCCcceEEEEEe---eeccccCCc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVL--------YTSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGD  146 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~--------~tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~  146 (307)
                      +|++.+++.||+||++...+...        ...|+.|.|....          .+++.|..|||+++   ++.|||+++
T Consensus       321 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p  400 (536)
T 3ni2_A          321 FPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDP  400 (536)
T ss_dssp             CTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred             CCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCCh
Confidence            67888999999999986555431        2357788887432          25678899999999   999999998


Q ss_pred             c----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEee
Q psy8473         147 R----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTS  221 (307)
Q Consensus       147 ~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~  221 (307)
                      +    ....++||+|||+|++ ++|+++++||.||+||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+    
T Consensus       401 ~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~----  476 (536)
T 3ni2_A          401 EATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVP----  476 (536)
T ss_dssp             HHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE----
T ss_pred             hHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCcee----
Confidence            8    3345789999999999 599999999999999999999999999999999999999999999887776655    


Q ss_pred             ecccCcccccccccccccccccCCcccchhhHHHHHccc
Q psy8473         222 EEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       222 ~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                               ++|+      +...+......+|.++|+++
T Consensus       477 ---------~a~v------v~~~~~~~~~~~l~~~l~~~  500 (536)
T 3ni2_A          477 ---------VAFV------VKSEKSQATEDEIKQYISKQ  500 (536)
T ss_dssp             ---------EEEE------EECTTCCCCHHHHHHHHHTT
T ss_pred             ---------EEEE------EecCCCCCCHHHHHHHHHHh
Confidence                     2222      11223456678888888765

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.85  E-value=2.5e-21  Score=185.52  Aligned_cols=92  Identities=24%  Similarity=0.395  Sum_probs=81.6

Q ss_pred             cCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcC
Q psy8473         126 YKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKL  197 (307)
Q Consensus       126 ~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~  197 (307)
                      ++.|..|||+++   ++.|||++++    ....++||+|||+|+++ +|++++.||.+++||++|++|+|.|||+.+.++
T Consensus       373 ~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~  452 (539)
T 1mdb_A          373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAH  452 (539)
T ss_dssp             CCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTS
T ss_pred             CcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence            445677999999   9999999987    23347899999999995 899999999999999999999999999999999


Q ss_pred             CCcceEEEEEeeCCCcceEE
Q psy8473         198 SEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       198 p~V~~~~v~~~~~~~~~~~~  217 (307)
                      |.|.+++|++.+++..++.+
T Consensus       453 p~V~~a~vv~~~~~~~g~~~  472 (539)
T 1mdb_A          453 PAVHDAAMVSMPDQFLGERS  472 (539)
T ss_dssp             TTEEEEEEEEEEETTTEEEE
T ss_pred             CCcceEEEEeccccccCceE
Confidence            99999999999887666554

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.85  E-value=8.5e-21  Score=184.78  Aligned_cols=212  Identities=17%  Similarity=0.173  Sum_probs=119.8

Q ss_pred             CCCCcccCCCCCcccccceEEEEeC-------CCCcccccccce---------e-cCCcceEEEEEe---eeccccCCcc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYT-------SGSTGIPKEYRR---------M-YKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~t-------sGttG~Pkg~~~---------~-~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      .++++++|.||+||++..+++...+       .++.|+|.+...         + ++.|..|||+++   ++.|||++++
T Consensus       300 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~  379 (620)
T 4dg8_A          300 HPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAA  379 (620)
T ss_dssp             CTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHH
T ss_pred             CCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChh
Confidence            5788899999999998776655432       457788875433         2 678899999999   9999999987


Q ss_pred             c----c-----cc--ccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         148 A----I-----KY--RRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       148 ~----~-----~~--~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                      .    .     ..  .+||+|||++++ ++|+++++||.|++||++|++|+|+|||+.+.++|+|.+++|++.+++....
T Consensus       380 ~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~  459 (620)
T 4dg8_A          380 RTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ  459 (620)
T ss_dssp             HHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE
T ss_pred             hhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE
Confidence            1    1     11  179999999999 5999999999999999999999999999999999999999999888775555


Q ss_pred             EEEEeeec-ccCcc------------cccccccccccccccCCcccchhhHHHHHccccccccccccccccccccceEEe
Q psy8473         216 VSEVTSEE-IRGVD------------DILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEA  282 (307)
Q Consensus       216 ~~~~~~~~-~~~~d------------g~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~~~~v~  282 (307)
                      .+...... ....+            ..+.++   +.+-+..-.+|+-..+.+.+.....- ........+..+..+|..
T Consensus       460 lv~~~~~~~~~~~~~l~~~Lp~y~~P~~~~~v---~~lP~t~~GKidR~~L~~~~~~~~~~-~~~~~~~~e~~l~~iw~~  535 (620)
T 4dg8_A          460 LLCAWTGKADASPQALLRQLPTWQRPHACVRV---EALPLTAHGKLDRAALLRRLEEPLER-CASALDPDQRGCAQLWSE  535 (620)
T ss_dssp             EEEEEEECTTCCCHHHHHHSCGGGSCSEEEEC---SSCCCC----CCHHHHHHHTCSCC---------------------
T ss_pred             EEEEEecChHHHHHHHHHhChhhcCCcEEEEE---CcCCCCcccCHhHHHHhhcccccccc-ccCCCCHHHHHHHHHHHH
Confidence            44332211 10000            001111   22333333366666666554332111 111111223345556766


Q ss_pred             ccC---CCCCCCeeeeccccchhh
Q psy8473         283 PSS---AGSTDSSFIVKSREDRAE  303 (307)
Q Consensus       283 ~~~---~~~~ds~f~~~~~~~~~~  303 (307)
                      ...   ....|+||++......|-
T Consensus       536 vL~~~~~~~~d~Ff~lGGdSl~a~  559 (620)
T 4dg8_A          536 LLGCEVGAADQDFFLCGGNSLLAL  559 (620)
T ss_dssp             ------------------------
T ss_pred             HhCCCCCCCCCChhhccCcHHHHH
Confidence            433   234789999876665543

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.84  E-value=2e-20  Score=182.13  Aligned_cols=93  Identities=19%  Similarity=0.321  Sum_probs=82.6

Q ss_pred             ecCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473         125 MYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK  196 (307)
Q Consensus       125 ~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~  196 (307)
                      ++|.|..|||+++   ++.||+++++    ....++||+|||++++ ++|.++++||.|++||++|++|+|+|||+.+.+
T Consensus       376 ~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~  455 (617)
T 3rg2_A          376 PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLR  455 (617)
T ss_dssp             BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTT
T ss_pred             CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHh
Confidence            4567788999999   9999999988    3345789999999999 599999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCcceEE
Q psy8473         197 LSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       197 ~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +|.|.++++++.+++..+..+
T Consensus       456 ~p~V~~a~vv~~~~~~~~~~~  476 (617)
T 3rg2_A          456 HPAVIYAALVSMEDELMGEKS  476 (617)
T ss_dssp             STTEEEEEEEEEEETTTEEEE
T ss_pred             CCCeeEEEEEeccCcccCeeE
Confidence            999999999998877655443

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.83  E-value=8.6e-21  Score=182.19  Aligned_cols=154  Identities=15%  Similarity=0.142  Sum_probs=120.0

Q ss_pred             CCCCcccCCCCCcccccceEEEE---eCCCCcccccccce----------ecCCcceEEEEEe---eeccccCCcc----
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR----------MYKTGDYGRIVDD---IHRCWSSGDR----  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~----------~~~~g~~Gel~v~---v~~gy~~~~~----  147 (307)
                      +++..+++.||+||++..++...   ...|+.|+|.+...          +++.|..|||+++   ++.|||++++    
T Consensus       333 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~  412 (548)
T 2d1s_A          333 FNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKE  412 (548)
T ss_dssp             TTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHH
T ss_pred             cCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhh
Confidence            56677899999999976554422   13578888874322          5677889999999   9999999987    


Q ss_pred             ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeecccC
Q psy8473         148 AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRG  226 (307)
Q Consensus       148 ~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      ....++||+|||+|++ ++|+++++||.+|+||++|++|+|.|||+++.++|.|.+++|++.+++..++.+..       
T Consensus       413 ~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a-------  485 (548)
T 2d1s_A          413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGA-------  485 (548)
T ss_dssp             HBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE-------
T ss_pred             cccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEE-------
Confidence            2235789999999999 48999999999999999999999999999999999999999999988776665422       


Q ss_pred             cccccccccccccccccCCcccchhhHHHHHccc
Q psy8473         227 VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       227 ~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                            |+.      ...|..++..+|.++++++
T Consensus       486 ------~vv------~~~~~~~~~~~l~~~~~~~  507 (548)
T 2d1s_A          486 ------VVV------LESGKNMTEKEVMDYVASQ  507 (548)
T ss_dssp             ------EEE------ECTTCCCCHHHHHHHHHTT
T ss_pred             ------EEE------EcCCCCCCHHHHHHHHHHh
Confidence                  211      1123345667888887664

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.83  E-value=4.1e-20  Score=175.92  Aligned_cols=130  Identities=25%  Similarity=0.349  Sum_probs=107.9

Q ss_pred             CCCCcccCCCCCcccccceEEEEe--------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY--------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~--------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      +|++.+++.||+||++..++....        .+++.|.|.....         +++.|..|||+++   ++.|||++++
T Consensus       284 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~  363 (511)
T 3e7w_A          284 FPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPE  363 (511)
T ss_dssp             CTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHH
T ss_pred             CCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcc
Confidence            678889999999999876665443        2455777764322         6788999999999   9999999987


Q ss_pred             c-------cccccEEeecCeEEEECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 A-------IKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 ~-------~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .       ....+||+|||+|++++|+++++||.+|+||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus       364 ~t~~~f~~~~g~~~~~TGDlg~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~  440 (511)
T 3e7w_A          364 LTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYL  440 (511)
T ss_dssp             HHHHHEEESSSSEEEEEEEEEEEETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEE
T ss_pred             cchhhhcCCCCCEEEeCCCeEEccCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEE
Confidence            1       123348999999999999999999999999999999999999999999999999999998876655444

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.83  E-value=5.4e-21  Score=184.42  Aligned_cols=130  Identities=30%  Similarity=0.340  Sum_probs=68.0

Q ss_pred             CCCCcccCCCCCcccccceEEEEe-------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc-
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY-------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR-  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~-------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~-  147 (307)
                      ++++.+++.||+||++...+....       +.++.|+|.....         +++.|..|||+++   ++.|||++++ 
T Consensus       350 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~  429 (570)
T 4gr5_A          350 HPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPAL  429 (570)
T ss_dssp             CTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHH
T ss_pred             CCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchh
Confidence            677889999999999876665433       2345787764332         6788999999999   9999999987 


Q ss_pred             ---cc--------ccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcce
Q psy8473         148 ---AI--------KYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQ  215 (307)
Q Consensus       148 ---~~--------~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~  215 (307)
                         ..        ..++||+|||+|+++ +|+++++||.||+||++|++|+|.|||+.+.++|.|.+++|++.++...+.
T Consensus       430 t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~  509 (570)
T 4gr5_A          430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDK  509 (570)
T ss_dssp             HHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------
T ss_pred             hhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCe
Confidence               11        234899999999995 999999999999999999999999999999999999999999887765544


Q ss_pred             EE
Q psy8473         216 VS  217 (307)
Q Consensus       216 ~~  217 (307)
                      .+
T Consensus       510 ~~  511 (570)
T 4gr5_A          510 QL  511 (570)
T ss_dssp             --
T ss_pred             EE
Confidence            43

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.82  E-value=2.2e-20  Score=178.06  Aligned_cols=150  Identities=15%  Similarity=0.221  Sum_probs=119.2

Q ss_pred             CCcccCCCCCcccccceEEEEe-----CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc---cc
Q psy8473          90 GESMLHADNNNEQSNDIAIVLY-----TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR---AI  149 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~-----tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~---~~  149 (307)
                      ++++++.||+||++...+....     ..|+.|.|.....         +++.| .|||+++   ++.|||++++   ..
T Consensus       308 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~  386 (517)
T 3r44_A          308 NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDA  386 (517)
T ss_dssp             TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHT
T ss_pred             CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhh
Confidence            5678999999999876665533     3577888875433         45566 7999999   9999999988   23


Q ss_pred             ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeecccCcc
Q psy8473         150 KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVD  228 (307)
Q Consensus       150 ~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~d  228 (307)
                      ..++||+|||+|++ ++|+++++||.|++||++|++|+|.|||+.+.++|+|.+++|++.+++..+..+...        
T Consensus       387 f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~--------  458 (517)
T 3r44_A          387 FDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAI--------  458 (517)
T ss_dssp             EETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE--------
T ss_pred             hcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEE--------
Confidence            35799999999999 589999999999999999999999999999999999999999999888776655222        


Q ss_pred             cccccccccccccccCCcccchhhHHHHHccc
Q psy8473         229 DILLYEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       229 g~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                           +       ...+..++..+|.+++.++
T Consensus       459 -----v-------~~~~~~~~~~~l~~~l~~~  478 (517)
T 3r44_A          459 -----V-------VADQNEVSEQQIVEYCGTR  478 (517)
T ss_dssp             -----E-------EECTTTCCHHHHHHHHHHH
T ss_pred             -----E-------ECCCCCCCHHHHHHHHHHh
Confidence                 1       1123345667888877654

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.82  E-value=5.8e-21  Score=183.21  Aligned_cols=93  Identities=17%  Similarity=0.232  Sum_probs=44.1

Q ss_pred             ecCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473         125 MYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSK  196 (307)
Q Consensus       125 ~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~  196 (307)
                      +++.|..|||+++   ++.|||++++    ....++||+|||+|+++ +|+++++||.+|+||++|++|+|.|||+.+.+
T Consensus       381 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~  460 (544)
T 3o83_A          381 EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILL  460 (544)
T ss_dssp             BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC---------------------
T ss_pred             CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHh
Confidence            3456778999999   9999999987    33357999999999995 99999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCcceEE
Q psy8473         197 LSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       197 ~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +|.|.+++|++.+++..+..+
T Consensus       461 ~p~V~~a~vv~~~~~~~g~~~  481 (544)
T 3o83_A          461 HPEVMHAALVAIVDEQFGEKS  481 (544)
T ss_dssp             ---------------------
T ss_pred             CCCccEEEEEeccCCCCCceE
Confidence            999999999998877655443

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.82  E-value=4.5e-20  Score=175.65  Aligned_cols=130  Identities=28%  Similarity=0.387  Sum_probs=110.3

Q ss_pred             CCCCcccCCCCCcccccceEEEEe--------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY--------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~--------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      +|++.+++.||+||++..++....        .+++.|.|.....         +++.|..|||+++   ++.|||++++
T Consensus       285 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~  364 (512)
T 3fce_A          285 FPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPE  364 (512)
T ss_dssp             CTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHH
T ss_pred             CCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCch
Confidence            678889999999999876665433        4567787764332         5778899999999   9999999987


Q ss_pred             -------ccccccEEeecCeEEEECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 -------AIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 -------~~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                             ..+.++||+|||+|++++|++++.||.+|+||++|++|+|.+||+.+.++|.|.+++|++.+++..+..+
T Consensus       365 ~t~~~f~~~~~~~~~~TGDlg~~~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~  441 (512)
T 3fce_A          365 LTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYL  441 (512)
T ss_dssp             HHHHHEEEETTEEEEEEEEEEEEETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEE
T ss_pred             hhhhccccCCCCEEEeCCceEEecCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEE
Confidence                   1234679999999999999999999999999999999999999999999999999999998877665554

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.82  E-value=3.3e-20  Score=176.30  Aligned_cols=150  Identities=13%  Similarity=0.158  Sum_probs=115.5

Q ss_pred             CCcccCCCCCcccccceEEE-EeCCCCcccccccc------------eecCCcceEEEEEe----eeccccCCcc---cc
Q psy8473          90 GESMLHADNNNEQSNDIAIV-LYTSGSTGIPKEYR------------RMYKTGDYGRIVDD----IHRCWSSGDR---AI  149 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~-~~tsGttG~Pkg~~------------~~~~~g~~Gel~v~----v~~gy~~~~~---~~  149 (307)
                      +..+++.||+||+. .+++. ....|+.|.|....            .+++.|..|||+++    ++.||+++++   ..
T Consensus       297 ~~~~~~~YG~TE~~-~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~  375 (504)
T 1t5h_X          297 PGEKVNIYGTTEAM-NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEK  375 (504)
T ss_dssp             CSEEEEEEEETTTE-EEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHH
T ss_pred             Ccceeeeecccccc-ccccccCCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhh
Confidence            35689999999983 22221 23467888876321            45778889999997    7899999987   22


Q ss_pred             ccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeeecccCcc
Q psy8473         150 KYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVD  228 (307)
Q Consensus       150 ~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~d  228 (307)
                      ..++||+|||+|+++ +|+++++||.+++||++|++|+|.|||+.+.++|.|.+++|++.+++..++.+..         
T Consensus       376 f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a---------  446 (504)
T 1t5h_X          376 LQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA---------  446 (504)
T ss_dssp             EETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEE---------
T ss_pred             hcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEE---------
Confidence            247899999999994 9999999999999999999999999999999999999999999988876665522         


Q ss_pred             cccccccccccccccCCcccchhhHHHHHcc
Q psy8473         229 DILLYEGRTDSQVKIRGNRVDLSEVEAALSK  259 (307)
Q Consensus       229 g~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~  259 (307)
                          |+.      ...|..++..+|.+++++
T Consensus       447 ----~vv------~~~~~~~~~~~l~~~~~~  467 (504)
T 1t5h_X          447 ----CVV------PRLGETLSADALDTFCRS  467 (504)
T ss_dssp             ----EEE------ECTTCCCCHHHHHHHHHT
T ss_pred             ----EEE------ecCCcCcCHHHHHHHHhh
Confidence                221      112334566788888875

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.81  E-value=2.5e-20  Score=178.96  Aligned_cols=153  Identities=21%  Similarity=0.253  Sum_probs=104.1

Q ss_pred             CCCcccCCCCCcccccceEEEE----eCCCCcccccccce----------ecCCcceEEEEEe---eeccccCCccc---
Q psy8473          89 PGESMLHADNNNEQSNDIAIVL----YTSGSTGIPKEYRR----------MYKTGDYGRIVDD---IHRCWSSGDRA---  148 (307)
Q Consensus        89 ~~~~~~~~yg~te~~~~~a~~~----~tsGttG~Pkg~~~----------~~~~g~~Gel~v~---v~~gy~~~~~~---  148 (307)
                      |++++++.||+||++..++...    ..+++.|.|.+...          +++.|..|||+++   ++.|||++++.   
T Consensus       327 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~  406 (549)
T 3g7s_A          327 PRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQE  406 (549)
T ss_dssp             TTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGT
T ss_pred             ccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhh
Confidence            5578899999999987655543    24678898875332          5778889999999   99999999871   


Q ss_pred             -----cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEEEEeee
Q psy8473         149 -----IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVSEVTSE  222 (307)
Q Consensus       149 -----~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~  222 (307)
                           .+..+||+|||+|++ ++|+++++||.|++||++|++|+|.|||+++.++|.|.+++|++.+++..+..+.    
T Consensus       407 ~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~----  482 (549)
T 3g7s_A          407 CWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPK----  482 (549)
T ss_dssp             SEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CE----
T ss_pred             hhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEE----
Confidence                 222349999999999 5999999999999999999999999999999999999999999888776554431    


Q ss_pred             cccCcccccccccccccccccCC--cccchhhHHHHHccc
Q psy8473         223 EIRGVDDILLYEGRTDSQVKIRG--NRVDLSEVEAALSKI  260 (307)
Q Consensus       223 ~~~~~dg~~~~~gR~dd~ik~~G--~~i~~~eIe~~L~~~  260 (307)
                               +|+..      ..+  ..++..+|.++|+++
T Consensus       483 ---------a~vv~------~~~~~~~~~~~~l~~~l~~~  507 (549)
T 3g7s_A          483 ---------AFIVL------KPEYRGKVDEEDIIEWVRER  507 (549)
T ss_dssp             ---------EEEEE------CSTTTTSCCHHHHHHHHHTT
T ss_pred             ---------EEEEE------CCCccCcCCHHHHHHHHHHh
Confidence                     11111      111  245677888888775

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.81  E-value=5.4e-21  Score=183.67  Aligned_cols=127  Identities=16%  Similarity=0.206  Sum_probs=63.9

Q ss_pred             CcccCCCCCcccccceEEEEe---CCCCcccccccc----------eecCCcceEEEEEe---eeccccCCcc----ccc
Q psy8473          91 ESMLHADNNNEQSNDIAIVLY---TSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGDR----AIK  150 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~~~---tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~~----~~~  150 (307)
                      ..+++.||+||++..++....   ..|+.|+|.+..          .+++.|..|||+++   ++.|||++++    ...
T Consensus       334 ~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~  413 (550)
T 3rix_A          334 PGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALID  413 (550)
T ss_dssp             SCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred             CccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcC
Confidence            347899999999865544322   357788887432          25778889999999   9999999987    333


Q ss_pred             cccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         151 YRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       151 ~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .++||+|||+|++ ++|+++++||.+++||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus       414 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~  481 (550)
T 3rix_A          414 KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELP  481 (550)
T ss_dssp             TTSCEEEEEEEEECTTCCEEEC----------------------------------------------
T ss_pred             CCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceE
Confidence            5789999999999 599999999999999999999999999999999999999999998877665544

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.81  E-value=4.3e-20  Score=178.49  Aligned_cols=128  Identities=25%  Similarity=0.305  Sum_probs=108.3

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCcccccccce---------ecCCcceEEEEEe--------eeccccCCcc--
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR---------MYKTGDYGRIVDD--------IHRCWSSGDR--  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~---------~~~~g~~Gel~v~--------v~~gy~~~~~--  147 (307)
                      ++++++.||+||++..++...   ...|+.|+|.+...         +++.|..|||+++        ++.|||++++  
T Consensus       366 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t  445 (580)
T 3etc_A          366 GIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERT  445 (580)
T ss_dssp             SCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHH
T ss_pred             CCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHH
Confidence            566899999999976544432   24688999885433         6778999999995        7789999988  


Q ss_pred             -ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 -AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 -~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                       ....++||+|||+|++ ++|+++++||.||+||++|++|+|.|||+++.++|.|.+++|++.+++..+..+
T Consensus       446 ~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~  517 (580)
T 3etc_A          446 EETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVI  517 (580)
T ss_dssp             HHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred             HhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEE
Confidence             2234789999999999 599999999999999999999999999999999999999999999988777665

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.81  E-value=1.2e-19  Score=190.14  Aligned_cols=130  Identities=23%  Similarity=0.332  Sum_probs=107.6

Q ss_pred             CCCCcccCCCCCcccccceEEEEe-------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc-
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY-------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR-  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~-------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~-  147 (307)
                      +++.+++|.||+||++..+++...       .+.+.|+|.+...         ++|.|..|||+++   ++.||+++++ 
T Consensus       744 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~  823 (1304)
T 2vsq_A          744 MGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADL  823 (1304)
T ss_dssp             HCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHH
T ss_pred             CCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCccc
Confidence            345678999999999877666532       2346777775332         6789999999999   9999999987 


Q ss_pred             ----c-----cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 ----A-----IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 ----~-----~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                          .     ....+||+|||+|++ +||.++++||.|++||++|++|+|+|||+.+.++|+|.+++|++.++...+..+
T Consensus       824 T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l  903 (1304)
T 2vsq_A          824 TKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASI  903 (1304)
T ss_dssp             HHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEE
T ss_pred             chhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEE
Confidence                1     124679999999999 599999999999999999999999999999999999999999988776555444

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.81  E-value=4.9e-20  Score=175.73  Aligned_cols=124  Identities=26%  Similarity=0.419  Sum_probs=100.6

Q ss_pred             CCCCcccCCCCCcccccceEEEEe--------CCCCcccccccc---------eecCCcceEEEEEe---eeccccCCcc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY--------TSGSTGIPKEYR---------RMYKTGDYGRIVDD---IHRCWSSGDR  147 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~--------tsGttG~Pkg~~---------~~~~~g~~Gel~v~---v~~gy~~~~~  147 (307)
                      +|++.+++.||+||++..++....        ..++.|+|....         .+++.|..|||+++   ++.|||++++
T Consensus       288 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~  367 (521)
T 3l8c_A          288 FPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPE  367 (521)
T ss_dssp             CTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHH
T ss_pred             CCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCch
Confidence            678889999999999876665432        456788887532         26788899999999   9999999988


Q ss_pred             c-------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCC
Q psy8473         148 A-------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPG  211 (307)
Q Consensus       148 ~-------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~  211 (307)
                      .       .+.++||+|||+|++ ++|++++.||.+|+||++|++|+|.+||+.+.++|.|.++++++.++.
T Consensus       368 ~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~  439 (521)
T 3l8c_A          368 KTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNK  439 (521)
T ss_dssp             HHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSS
T ss_pred             HhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecC
Confidence            1       235789999999999 599999999999999999999999999999999999999998877654

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.80  E-value=1.6e-19  Score=173.88  Aligned_cols=127  Identities=28%  Similarity=0.347  Sum_probs=105.9

Q ss_pred             CcccCCCCCcccccceEEEEe------CCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc----c
Q psy8473          91 ESMLHADNNNEQSNDIAIVLY------TSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR----A  148 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~~~------tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~----~  148 (307)
                      +.+++.||+||++..++....      .+++.|+|.....         +++.|..|||+++   ++.|||++++    .
T Consensus       317 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~  396 (563)
T 1amu_A          317 VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQK  396 (563)
T ss_dssp             SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHH
T ss_pred             CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhh
Confidence            568999999999876555432      2457788874332         5778899999999   9999999987    1


Q ss_pred             c------ccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 I------KYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ~------~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .      ..++||+|||+|++ ++|+++++||.+|+||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus       397 f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~  472 (563)
T 1amu_A          397 FVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL  472 (563)
T ss_dssp             EEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEE
T ss_pred             cccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEE
Confidence            1      23579999999999 599999999999999999999999999999999999999999999887666554

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.80  E-value=8.3e-20  Score=178.83  Aligned_cols=128  Identities=20%  Similarity=0.211  Sum_probs=106.9

Q ss_pred             CCcccCCCCCcccccceEEEE-----eCCCCcccccccce---------ecCCcceEEEEEe-----eeccccCCccc--
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-----YTSGSTGIPKEYRR---------MYKTGDYGRIVDD-----IHRCWSSGDRA--  148 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-----~tsGttG~Pkg~~~---------~~~~g~~Gel~v~-----v~~gy~~~~~~--  148 (307)
                      ++.+++.||+||++..++...     ...|+.|+|.....         +++.|..|||+++     ++.|||++++.  
T Consensus       406 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~  485 (652)
T 1pg4_A          406 KCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFE  485 (652)
T ss_dssp             CSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHH
T ss_pred             CCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHH
Confidence            367899999999876544332     24588899875332         5677889999997     78999999871  


Q ss_pred             ----cccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         149 ----IKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       149 ----~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                          ...++||+|||+|+++ +|+++++||.||+||++|++|+|.|||+++.++|.|.+++|++.+++..++.+
T Consensus       486 ~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l  559 (652)
T 1pg4_A          486 QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI  559 (652)
T ss_dssp             HHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEE
T ss_pred             hhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEE
Confidence                1247899999999994 99999999999999999999999999999999999999999999887766655

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.80  E-value=9.1e-20  Score=173.40  Aligned_cols=128  Identities=18%  Similarity=0.224  Sum_probs=104.0

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCcccccccce---------ecC---CcceEEEEEe---eeccccCCcc----
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR---------MYK---TGDYGRIVDD---IHRCWSSGDR----  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~---------~~~---~g~~Gel~v~---v~~gy~~~~~----  147 (307)
                      +.++++.||+||++..++...   ...++.|+|.+...         +++   .|..|||+++   ++.|||++++    
T Consensus       297 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~  376 (505)
T 3nyq_A          297 GRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAA  376 (505)
T ss_dssp             SCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHH
T ss_pred             CCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhh
Confidence            456899999999874433221   13577888875333         233   3788999999   9999999987    


Q ss_pred             ccccccEEeecCeEEE-ECCeEEEeeec-CCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 AIKYRRMYKTGDYGRI-VDDILLYEGRT-DSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 ~~~~~~~~~tGD~g~~-~~g~l~~~GR~-~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ....++||+|||+|++ ++|+++++||. +++||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus       377 ~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l  448 (505)
T 3nyq_A          377 AFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERI  448 (505)
T ss_dssp             TBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred             hhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEE
Confidence            3335789999999999 59999999998 5899999999999999999999999999999999888776655

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.79  E-value=2.8e-20  Score=189.93  Aligned_cols=130  Identities=23%  Similarity=0.293  Sum_probs=72.8

Q ss_pred             CCCCcccCCCCCcccccceEEEE--------eCCCCcccccccc----------eecCCcceEEEEEe---eeccccCCc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVL--------YTSGSTGIPKEYR----------RMYKTGDYGRIVDD---IHRCWSSGD  146 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~--------~tsGttG~Pkg~~----------~~~~~g~~Gel~v~---v~~gy~~~~  146 (307)
                      +|++++++.||+||++..++...        ..+|+.|.|....          .+++.|..|||+++   ++.|||+++
T Consensus       368 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p  447 (979)
T 3tsy_A          368 FPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNP  447 (979)
T ss_dssp             CTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred             CCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCCh
Confidence            67888999999999986655431        2467888887432          25778889999999   999999998


Q ss_pred             c----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         147 R----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       147 ~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +    ....++||+|||++++ ++|+++++||.|++||++|++|+|.|||+.+.++|.|.+++|++.+++..++.+
T Consensus       448 ~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~  523 (979)
T 3tsy_A          448 AATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVP  523 (979)
T ss_dssp             HHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------
T ss_pred             hhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEE
Confidence            7    3345789999999999 589999999999999999999999999999999999999999988876555443

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.78  E-value=5.3e-20  Score=175.05  Aligned_cols=130  Identities=24%  Similarity=0.325  Sum_probs=70.8

Q ss_pred             CCCCcccCCCCCcccccceEEEEeC--CCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc---ccc
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLYT--SGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR---AIK  150 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~t--sGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~---~~~  150 (307)
                      +|++.+++.||+||++..++.....  .++.|+|.....         +++.|..|||+++   ++.|||++++   ...
T Consensus       293 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f  372 (509)
T 3ivr_A          293 CPNATFWATFGQSETSGLSTFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF  372 (509)
T ss_dssp             CTTCEEEEEEEEGGGTEEEEEEEGGGSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT
T ss_pred             cCCCeEEcccCccccccccccCccccCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh
Confidence            6788899999999998766655442  456788875332         6788999999999   9999999987   223


Q ss_pred             cccEEeecCeEEE-ECCeEEEeeec--CCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         151 YRRMYKTGDYGRI-VDDILLYEGRT--DSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       151 ~~~~~~tGD~g~~-~~g~l~~~GR~--~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .++||+|||+|++ ++|++++.||.  +++||++|++|+|.+||+.+.++|.|.+++|++.+++..+..+
T Consensus       373 ~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~  442 (509)
T 3ivr_A          373 RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAI  442 (509)
T ss_dssp             GGGSEEEEEEEEECTTSCEEEEEEC---------------------------------------------
T ss_pred             hcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEE
Confidence            4789999999999 59999999999  8999999999999999999999999999999998877655444

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.77  E-value=2.7e-19  Score=171.48  Aligned_cols=128  Identities=16%  Similarity=0.211  Sum_probs=95.1

Q ss_pred             CCcccCCCCCcccccceEEEEeC--------------CCCcccccccce---------ecCC--cceEEEEEe---eecc
Q psy8473          90 GESMLHADNNNEQSNDIAIVLYT--------------SGSTGIPKEYRR---------MYKT--GDYGRIVDD---IHRC  141 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~t--------------sGttG~Pkg~~~---------~~~~--g~~Gel~v~---v~~g  141 (307)
                      ++++++.||+||++..++.....              .++.|+|.....         +++.  +..|||+++   ++.|
T Consensus       317 g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~G  396 (541)
T 1v25_A          317 GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG  396 (541)
T ss_dssp             TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSS
T ss_pred             CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhcc
Confidence            66789999999998665543221              367888875332         3442  357999999   9999


Q ss_pred             ccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473         142 WSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV  216 (307)
Q Consensus       142 y~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~  216 (307)
                      ||++++    ....++||+|||+|++ ++|+++++||.+|+||++|++|+|.|||+.+.++|.|.+++|++.+++..+..
T Consensus       397 Y~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~  476 (541)
T 1v25_A          397 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER  476 (541)
T ss_dssp             CBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEE
T ss_pred             ccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCce
Confidence            999987    2233789999999999 48999999999999999999999999999999999999999999988876655


Q ss_pred             E
Q psy8473         217 S  217 (307)
Q Consensus       217 ~  217 (307)
                      +
T Consensus       477 ~  477 (541)
T 1v25_A          477 P  477 (541)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.77  E-value=1.2e-19  Score=174.71  Aligned_cols=127  Identities=25%  Similarity=0.346  Sum_probs=69.1

Q ss_pred             CCCCcccCCCCCcccccceEEEEe----CCCCcccccccce----------ecCCcceEEEEEe---eeccccCCccc--
Q psy8473          88 IPGESMLHADNNNEQSNDIAIVLY----TSGSTGIPKEYRR----------MYKTGDYGRIVDD---IHRCWSSGDRA--  148 (307)
Q Consensus        88 ~~~~~~~~~yg~te~~~~~a~~~~----tsGttG~Pkg~~~----------~~~~g~~Gel~v~---v~~gy~~~~~~--  148 (307)
                      .+++.+++.||+||++..++....    ..++.|.|.+...          +++.|..|||+++   ++.|||++++.  
T Consensus       317 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~  396 (562)
T 3ite_A          317 SDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKG  396 (562)
T ss_dssp             CSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCS
T ss_pred             CCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccc
Confidence            457889999999999876655443    2466788874332          5788889999999   99999999882  


Q ss_pred             ---cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcC-CCcceEEEEEeeCCCcc
Q psy8473         149 ---IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKL-SEVDKLSVLCYKPGEVD  214 (307)
Q Consensus       149 ---~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~-p~V~~~~v~~~~~~~~~  214 (307)
                         .+.++||+|||+|++ ++|+++++||.+|+||++|++|+|.|||+++.++ |.+.++++++.+++..+
T Consensus       397 ~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~  467 (562)
T 3ite_A          397 FCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTS  467 (562)
T ss_dssp             EEEETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------------
T ss_pred             cccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCc
Confidence               223459999999999 5999999999999999999999999999999998 77778777777665443

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.76  E-value=4.8e-19  Score=170.84  Aligned_cols=128  Identities=21%  Similarity=0.224  Sum_probs=105.0

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCcccccccce---------ecCCcceEEEEEe--------eeccccCCcc--
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR---------MYKTGDYGRIVDD--------IHRCWSSGDR--  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~---------~~~~g~~Gel~v~--------v~~gy~~~~~--  147 (307)
                      ++.+++.||+||++..++...   ...|+.|+|.....         +++.|..|||+++        ++.|||++++  
T Consensus       347 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t  426 (570)
T 3c5e_A          347 GLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKT  426 (570)
T ss_dssp             SCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHH
T ss_pred             CCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHh
Confidence            456899999999874332221   23578888875332         6788899999994        7899999987  


Q ss_pred             -ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 -AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 -~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                       ....++||+|||+|+++ +|+++++||.||+||++|++|+|.|||+.+.++|.|.+++|++.+++..+..+
T Consensus       427 ~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~  498 (570)
T 3c5e_A          427 AANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV  498 (570)
T ss_dssp             HHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred             hhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEE
Confidence             22237899999999994 99999999999999999999999999999999999999999999887666554

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.75  E-value=1.8e-18  Score=157.50  Aligned_cols=90  Identities=12%  Similarity=0.124  Sum_probs=67.5

Q ss_pred             CcceEEEEEe---eeccccCCcc-----ccccccEEeecCeEEEECCeEEEeeecCCeEEECCeeechhHHHHHH---hc
Q psy8473         128 TGDYGRIVDD---IHRCWSSGDR-----AIKYRRMYKTGDYGRIVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL---SK  196 (307)
Q Consensus       128 ~g~~Gel~v~---v~~gy~~~~~-----~~~~~~~~~tGD~g~~~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l---~~  196 (307)
                      .+..|++.+.   +..+|.+..+     ....++||+|||+|+++++.++++||.||+||++|++|+|.|||+.+   ..
T Consensus       195 ~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~  274 (358)
T 4gs5_A          195 GPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFH  274 (358)
T ss_dssp             STTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSEEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHH
T ss_pred             ccccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCceEEcccccCeEEECCEEECHHHHHHHHHHhcc
Confidence            3344555554   4555655444     33457899999999997555788899999999999999999999776   46


Q ss_pred             CCCcceEEEE-EeeCCCcceEE
Q psy8473         197 LSEVDKLSVL-CYKPGEVDQVS  217 (307)
Q Consensus       197 ~p~V~~~~v~-~~~~~~~~~~~  217 (307)
                      +|.|.+++++ +.+++..++.+
T Consensus       275 ~p~V~~a~vv~~~~d~~~ge~~  296 (358)
T 4gs5_A          275 HLNIGNAFFCWWEPDAKLGQKL  296 (358)
T ss_dssp             HHTCCCCEEEEEEEETTTEEEE
T ss_pred             CCCccEEEEEEecCCccCCEEE
Confidence            7999988876 56677666655

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.75  E-value=3.7e-19  Score=172.01  Aligned_cols=143  Identities=13%  Similarity=0.086  Sum_probs=107.7

Q ss_pred             ChhhHHHhhhhhhccCCCCCcccCCCCCcccccceEEEEe------------------------------CCCCcccccc
Q psy8473          72 SLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLY------------------------------TSGSTGIPKE  121 (307)
Q Consensus        72 ~~~~l~~~~~~~~~~~~~~~~~~~~yg~te~~~~~a~~~~------------------------------tsGttG~Pkg  121 (307)
                      +.+.+..+...+....+++..+++.||+||++..++....                              ..++.|.|..
T Consensus       302 ~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~  381 (590)
T 3kxw_A          302 REETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ  381 (590)
T ss_dssp             CHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESS
T ss_pred             CHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCC
Confidence            3344444444444444567789999999999876554211                              1245677764


Q ss_pred             c--------ceecCCcceEEEEEe---eeccccCCccc----c--------ccccEEeecCeEEEECCeEEEeeecCCeE
Q psy8473         122 Y--------RRMYKTGDYGRIVDD---IHRCWSSGDRA----I--------KYRRMYKTGDYGRIVDDILLYEGRTDSQV  178 (307)
Q Consensus       122 ~--------~~~~~~g~~Gel~v~---v~~gy~~~~~~----~--------~~~~~~~tGD~g~~~~g~l~~~GR~~~~i  178 (307)
                      .        ..+++.|..|||+++   ++.|||++++.    .        ...+||+|||+|++++|+++++||.||+|
T Consensus       382 ~v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ddG~l~~~GR~dd~I  461 (590)
T 3kxw_A          382 EVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLI  461 (590)
T ss_dssp             EEEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEETTEEEEEEESSCHH
T ss_pred             CeEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEECCEEEEEcCccceE
Confidence            3        235778889999999   99999999871    1        12339999999999999999999999999


Q ss_pred             EECCeeechhHHHHHH-hcCCCcc--eEEEEEeeCCCcc
Q psy8473         179 KIRGNRVDLSEVEAAL-SKLSEVD--KLSVLCYKPGEVD  214 (307)
Q Consensus       179 ~~~G~~v~~~eiE~~l-~~~p~V~--~~~v~~~~~~~~~  214 (307)
                      |++|++|+|.|||+.+ ..+|.|.  ++++++.+++...
T Consensus       462 k~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~  500 (590)
T 3kxw_A          462 IIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEY  500 (590)
T ss_dssp             HHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEE
T ss_pred             EECCEecCHHHHHHHHHhcCccccCccEEEEEecCCCCc
Confidence            9999999999999999 7889998  7888888766543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.75  E-value=3.1e-18  Score=162.49  Aligned_cols=128  Identities=10%  Similarity=0.142  Sum_probs=105.7

Q ss_pred             CCcccCCCCCcccccceEEEE-----eCCCCccccccccee----cCCcceEEEEEe---eeccccCCcc--ccccccEE
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-----YTSGSTGIPKEYRRM----YKTGDYGRIVDD---IHRCWSSGDR--AIKYRRMY  155 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-----~tsGttG~Pkg~~~~----~~~g~~Gel~v~---v~~gy~~~~~--~~~~~~~~  155 (307)
                      ++++++.||+||++...+...     ...++.|.|......    ...+..|||+++   ++.|||++++  ....++||
T Consensus       298 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~  377 (501)
T 3ipl_A          298 NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGTFENGYF  377 (501)
T ss_dssp             TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEE
T ss_pred             CCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcChhhcchhcCCce
Confidence            566899999999875544432     246788988754431    124567999999   9999999987  22457899


Q ss_pred             eecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         156 KTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       156 ~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +|||+|++ ++|++++.||.+|+||++|++|+|.+||+++.++|+|.++++++.+++..+..+
T Consensus       378 ~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~  440 (501)
T 3ipl_A          378 NTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVP  440 (501)
T ss_dssp             EEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred             ecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceE
Confidence            99999999 599999999999999999999999999999999999999999999888766655

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.73  E-value=2.2e-18  Score=169.10  Aligned_cols=127  Identities=21%  Similarity=0.229  Sum_probs=103.6

Q ss_pred             CCcccCCCCCcccccceEEEEe------CCCCcccccccce----------ecCC-cceEEEEEe-----eeccccCCcc
Q psy8473          90 GESMLHADNNNEQSNDIAIVLY------TSGSTGIPKEYRR----------MYKT-GDYGRIVDD-----IHRCWSSGDR  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~------tsGttG~Pkg~~~----------~~~~-g~~Gel~v~-----v~~gy~~~~~  147 (307)
                      ++.+++.||+||++..++....      ..|+.|.|.....          +++. |..|||+++     ++.|||++++
T Consensus       412 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~  491 (663)
T 1ry2_A          412 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHD  491 (663)
T ss_dssp             SSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHH
T ss_pred             CceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChH
Confidence            4679999999999865554322      3578888874322          3344 778999998     7899999987


Q ss_pred             c------cccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473         148 A------IKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV  216 (307)
Q Consensus       148 ~------~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~  216 (307)
                      .      ...++||+|||+|++ ++|+++++||.||+||++|++|+|.|||+++.++|.|.+++|++.+++..++.
T Consensus       492 ~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~  567 (663)
T 1ry2_A          492 RYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQA  567 (663)
T ss_dssp             HHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCC
T ss_pred             HHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeE
Confidence            1      224789999999999 49999999999999999999999999999999999999999999887655443

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.71  E-value=9.5e-18  Score=160.22  Aligned_cols=119  Identities=21%  Similarity=0.228  Sum_probs=95.7

Q ss_pred             CCcccCCCCCcccccceEEEE---eCCCCcccccccce---------ecCCcceEEEEEe---eeccccCCcc---cccc
Q psy8473          90 GESMLHADNNNEQSNDIAIVL---YTSGSTGIPKEYRR---------MYKTGDYGRIVDD---IHRCWSSGDR---AIKY  151 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~---~tsGttG~Pkg~~~---------~~~~g~~Gel~v~---v~~gy~~~~~---~~~~  151 (307)
                      ++.+++.||+||++...+...   ...++.|+|.....         +++.|..|||+++   ++.|||++++   ....
T Consensus       325 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~  404 (529)
T 2v7b_A          325 GCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL  404 (529)
T ss_dssp             SCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE
T ss_pred             CCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh
Confidence            566899999999865433322   13478888875332         6778899999999   8999999987   2223


Q ss_pred             ccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEe
Q psy8473         152 RRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCY  208 (307)
Q Consensus       152 ~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~  208 (307)
                      ++||+|||+++++ +|++++.||.+++||++|++|+|.+||+.+.++|.|.+++|++.
T Consensus       405 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~  462 (529)
T 2v7b_A          405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV  462 (529)
T ss_dssp             TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE
T ss_pred             cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence            7899999999994 99999999999999999999999999999999999999999988

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.52  E-value=8.2e-16  Score=149.62  Aligned_cols=95  Identities=17%  Similarity=0.128  Sum_probs=69.4

Q ss_pred             echhHHHHHHhcCCCcceEEEE----------EeeCCCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhH
Q psy8473         185 VDLSEVEAALSKLSEVDKLSVL----------CYKPGEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEV  253 (307)
Q Consensus       185 v~~~eiE~~l~~~p~V~~~~v~----------~~~~~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eI  253 (307)
                      +.++++++++.+.|.+...+..          ..+.......++.++|. ..++||+++|+||+|||||++|+||+|.||
T Consensus       355 ~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eI  434 (620)
T 4dg8_A          355 AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPAL  434 (620)
T ss_dssp             CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHH
T ss_pred             CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHH
Confidence            3455556666666666554421          11111111256777776 457999999999999999999999999999


Q ss_pred             HHHHccccccccccccccccccccce
Q psy8473         254 EAALSKISEVDKLSVLCYKPGEVDQI  279 (307)
Q Consensus       254 e~~L~~~p~V~~~~vv~~~~~~~~~~  279 (307)
                      |+.|.+||+|.+++|+..++.....+
T Consensus       435 E~~l~~~p~V~~a~Vv~~~~~~~~~l  460 (620)
T 4dg8_A          435 EQRFRRQPGILDCALLVRERNGVKQL  460 (620)
T ss_dssp             HHHHHTSTTEEEEEEEEEEETTEEEE
T ss_pred             HHHHHhCCCccEEEEEEEeCCCceEE
Confidence            99999999999999998776544443

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.52  E-value=6.9e-16  Score=149.04  Aligned_cols=85  Identities=20%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCCCCCCe
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAGSTDSS  292 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~~ds~  292 (307)
                      ++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++.   +...+|+++..+...+..
T Consensus       453 wy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~  532 (580)
T 3etc_A          453 YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDS  532 (580)
T ss_dssp             EEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             EEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHH
Confidence            4666665 457999999999999999999999999999999999999999999987764   445568887766543333


Q ss_pred             eeeccccch
Q psy8473         293 FIVKSREDR  301 (307)
Q Consensus       293 f~~~~~~~~  301 (307)
                      ...+++..+
T Consensus       533 ~~~~l~~~l  541 (580)
T 3etc_A          533 LKNELQDHV  541 (580)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            334454443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.51  E-value=2e-14  Score=133.89  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=88.5

Q ss_pred             CCcccCCCCCcccccc-eEEEEeCCCCccccccc----------ceecCCcceEEEEEe-eeccccCCccccccccEEee
Q psy8473          90 GESMLHADNNNEQSND-IAIVLYTSGSTGIPKEY----------RRMYKTGDYGRIVDD-IHRCWSSGDRAIKYRRMYKT  157 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~-~a~~~~tsGttG~Pkg~----------~~~~~~g~~Gel~v~-v~~gy~~~~~~~~~~~~~~t  157 (307)
                      ++.+++.||+||++.. +++....+...+.|...          ..+++.|..|||+++ ....       ....+||+|
T Consensus       231 g~~v~~~YG~TE~~~~~~~~~~~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~-------~~~~~~y~T  303 (436)
T 3qov_A          231 NVKAYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDRE-------MMPLIRYRT  303 (436)
T ss_dssp             TSEEEEEEEEGGGTEEEEEEECTTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCC-------SSCCCSEEE
T ss_pred             CccEEecCcchhhcCCeeEEecCCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcC-------CceEEEEEc
Confidence            5678999999998543 33332222223333211          225678889999997 2111       113679999


Q ss_pred             cCeEEEE-CC------e---EEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         158 GDYGRIV-DD------I---LLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       158 GD~g~~~-~g------~---l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      ||+++++ +|      +   +++.||.+|+||++|++|+|.+||+++.++|.|.++++++.+++..+..+
T Consensus       304 GDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l  373 (436)
T 3qov_A          304 RDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM  373 (436)
T ss_dssp             EEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred             CCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence            9999995 65      4   68999999999999999999999999999999999999888765554444

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.50  E-value=7.5e-16  Score=147.77  Aligned_cols=105  Identities=17%  Similarity=0.146  Sum_probs=67.3

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeCC--------CcceEEEEeeec-ccCcccccccccccccccccCCcccchh
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPG--------EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLS  251 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~--------~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~  251 (307)
                      .|..+.++++++++.+.|.+...+... +..        ..+..++.++|. ..++||+++|+||+|||||++|+||+|.
T Consensus       374 ~g~~~~~g~~GEl~v~g~~v~~GY~~~-~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~  452 (549)
T 3g7s_A          374 DGRELGVGESGEIVIRGPNIFKGYWKR-EKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPF  452 (549)
T ss_dssp             SCCEECTTCCEEEEEESTTSCSEETTC-TTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CH
T ss_pred             CCcCCCCCCceEEEEECcchhhhhCCC-hhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHH
Confidence            467777787888888888877655321 111        123346777776 4578999999999999999999999999


Q ss_pred             hHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         252 EVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       252 eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      |||+.|.+||+|.+++|++.++.   +...+|+++.++
T Consensus       453 eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~  490 (549)
T 3g7s_A          453 ELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPE  490 (549)
T ss_dssp             HHHHHHTTSTTEEEEEEECCCC------CEEEEEECST
T ss_pred             HHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCC
Confidence            99999999999999999987664   344567777654

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.50  E-value=4e-15  Score=142.70  Aligned_cols=106  Identities=12%  Similarity=0.032  Sum_probs=32.1

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL  257 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L  257 (307)
                      |..+.++++++++.+.|.+...+.......   .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus       379 ~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  458 (550)
T 3rix_A          379 GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESIL  458 (550)
T ss_dssp             CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----------------------
T ss_pred             CcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHH
Confidence            666777777777777777766543211000   001224666665 4579999999999999999999999999999999


Q ss_pred             ccccccccccccccccc---cccceEEeccCCC
Q psy8473         258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      .+||+|.+++|++.++.   +...+|++..++.
T Consensus       459 ~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~  491 (550)
T 3rix_A          459 LQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK  491 (550)
T ss_dssp             ---------------------------------
T ss_pred             HhCCCcceEEEEEeecCCCCceEEEEEEecCCC
Confidence            99999999999987764   4445577766544

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.47  E-value=4.8e-15  Score=141.74  Aligned_cols=106  Identities=19%  Similarity=0.102  Sum_probs=76.8

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL  257 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L  257 (307)
                      |..+.++++++++.+.|.+...+.......   .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus       374 ~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  453 (536)
T 3ni2_A          374 GASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALL  453 (536)
T ss_dssp             CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHH
T ss_pred             CcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHH
Confidence            666667777777777777766543211000   001234666665 4578999999999999999999999999999999


Q ss_pred             ccccccccccccccccc---cccceEEeccCCC
Q psy8473         258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      .+||+|.+++|++.++.   +...+|++...+.
T Consensus       454 ~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~  486 (536)
T 3ni2_A          454 IAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS  486 (536)
T ss_dssp             HTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred             HhCCCcceEEEEeeecCCCCceeEEEEEecCCC
Confidence            99999999999987654   3344577765543

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.45  E-value=1.4e-15  Score=146.63  Aligned_cols=105  Identities=25%  Similarity=0.191  Sum_probs=36.9

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEe--------eC---CCcceEEEEeeec-ccCcccccccccccccccccCCccc
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCY--------KP---GEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRV  248 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~--------~~---~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i  248 (307)
                      .|..+.++++++++.+.|.+...++...        .+   ...+..++.++|. ..++||+++|+||+|||||++|+||
T Consensus       400 ~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v  479 (570)
T 4gr5_A          400 DLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRV  479 (570)
T ss_dssp             TSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------
T ss_pred             CCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEe
Confidence            4667777777777888887766553210        01   1123356777776 4588999999999999999999999


Q ss_pred             chhhHHHHHccccccccccccccccc---cccceEEeccC
Q psy8473         249 DLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSS  285 (307)
Q Consensus       249 ~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~  285 (307)
                      +|.|||+.|.+||+|.+++|++.++.   +...+|++...
T Consensus       480 ~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~  519 (570)
T 4gr5_A          480 EPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAER  519 (570)
T ss_dssp             ----------------------------------------
T ss_pred             CHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecC
Confidence            99999999999999999999987654   33445666543

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.45  E-value=1.2e-14  Score=152.43  Aligned_cols=104  Identities=22%  Similarity=0.195  Sum_probs=75.4

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEE--------eeCC-CcceEEEEeeec-ccCcccccccccccccccccCCcccch
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLC--------YKPG-EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDL  250 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~--------~~~~-~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~  250 (307)
                      .|..++++++++++.+.+++...+...        .+++ ..+..+|.++|. .+.+||.+.|+||+|||||++|+||++
T Consensus       794 ~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~  873 (1304)
T 2vsq_A          794 QSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIEL  873 (1304)
T ss_dssp             TSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred             CcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCH
Confidence            355566666666666767665443210        0111 134567888876 458999999999999999999999999


Q ss_pred             hhHHHHHcccccccccccccccccc---ccceEEecc
Q psy8473         251 SEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPS  284 (307)
Q Consensus       251 ~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~  284 (307)
                      .|||+.|.+||+|.+++|+..++..   ...+|++..
T Consensus       874 ~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~  910 (1304)
T 2vsq_A          874 EEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR  910 (1304)
T ss_dssp             HHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECS
T ss_pred             HHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCC
Confidence            9999999999999999999766533   333466643

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.44  E-value=6e-14  Score=134.98  Aligned_cols=104  Identities=22%  Similarity=0.117  Sum_probs=75.8

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEe--------eCC-CcceEEEEeeecc-cCcccccccccccccccccCCcccch
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCY--------KPG-EVDQVSEVTSEEI-RGVDDILLYEGRTDSQVKIRGNRVDL  250 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~--------~~~-~~~~~~~~~~~~~-~~~dg~~~~~gR~dd~ik~~G~~i~~  250 (307)
                      .|..+.++++++++.+.|.+...+....        .++ ..+..++.++|.. .++||+++|+||+|||||++|+||+|
T Consensus       363 ~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p  442 (563)
T 1amu_A          363 NLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVEL  442 (563)
T ss_dssp             TSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred             CcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCH
Confidence            4566666777777777777765543110        000 1133567777764 58999999999999999999999999


Q ss_pred             hhHHHHHcccccccccccccccccc---ccceEEecc
Q psy8473         251 SEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPS  284 (307)
Q Consensus       251 ~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~  284 (307)
                      .|||+.|.+||+|.+++|++.++..   ...+|++..
T Consensus       443 ~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~  479 (563)
T 1amu_A          443 EEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE  479 (563)
T ss_dssp             HHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEES
T ss_pred             HHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeC
Confidence            9999999999999999999876643   334466543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.44  E-value=7e-14  Score=130.21  Aligned_cols=121  Identities=17%  Similarity=0.166  Sum_probs=86.4

Q ss_pred             CCcccCCCCCcccccc-eEEEEeCCCCccccc--c----------cceecCCcceEEEEEeeeccccCCccccccccEEe
Q psy8473          90 GESMLHADNNNEQSND-IAIVLYTSGSTGIPK--E----------YRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYK  156 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~-~a~~~~tsGttG~Pk--g----------~~~~~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~  156 (307)
                      ++.+++.||+||++.. +++.. ..+..|.+.  .          ...+++.|..|||+++   +..+   .....+||+
T Consensus       235 g~~v~~~YG~TE~~g~~~~~~~-~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~---~~t~---~~~~~~~y~  307 (437)
T 2y27_A          235 GIDAVDIYGLSEVMGPGVASEC-VETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFT---SLTK---EALPIIRYR  307 (437)
T ss_dssp             TSEEEEEEEETTTTEEEEEECC-TTTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEE---ESSC---SSSCCCSEE
T ss_pred             CcCEEecCCchhhcCCeeEEec-CCCCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEe---cCCc---CCchhheee
Confidence            5668999999997432 33322 222223332  1          1235678889999997   1111   011357999


Q ss_pred             ecCeEEEE--CCeE-----EEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         157 TGDYGRIV--DDIL-----LYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       157 tGD~g~~~--~g~l-----~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      |||+++++  +|++     ++.||.+|+|+++|++|+|.+||+++.++|.|.++++++.++......+
T Consensus       308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l  375 (437)
T 2y27_A          308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVL  375 (437)
T ss_dssp             EEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEE
T ss_pred             cCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceE
Confidence            99999994  4875     8999999999999999999999999999999998888877655444443

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.44  E-value=1.7e-15  Score=144.04  Aligned_cols=107  Identities=20%  Similarity=0.158  Sum_probs=76.7

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeC------CCcceEEEEeeecccCcccccccccccccccccCCcccchhhHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKP------GEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVE  254 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~------~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe  254 (307)
                      .|..+.++++++++.+.|.+...+......      ...+..++.++|....+||+++|+||+|||||++|+||+|.|||
T Consensus       335 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE  414 (511)
T 3e7w_A          335 EGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIE  414 (511)
T ss_dssp             TSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEETTEEEEEEESSSEEEETTEEEEHHHHH
T ss_pred             CCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEccCCeEEEEccccCEEEECCEEeCHHHHH
Confidence            466677777777777777766543210000      01233456777765557999999999999999999999999999


Q ss_pred             HHHcccccccccccccccccc---ccceEEeccCCC
Q psy8473         255 AALSKISEVDKLSVLCYKPGE---VDQIWEAPSSAG  287 (307)
Q Consensus       255 ~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~~  287 (307)
                      +.|.+||.|.+++|++.++..   ...+++++..+.
T Consensus       415 ~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~  450 (511)
T 3e7w_A          415 FHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHE  450 (511)
T ss_dssp             HHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCC
T ss_pred             HHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccc
Confidence            999999999999999766543   334566665543

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.43  E-value=4.5e-15  Score=141.11  Aligned_cols=106  Identities=22%  Similarity=0.168  Sum_probs=75.4

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeCC------CcceEEEEeeecccCcccccccccccccccccCCcccchhhHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPG------EVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVE  254 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~------~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe  254 (307)
                      .|..+.++++++++.+.|.+...+.......      ..+..++.++|....+||+++|+||+||+||++|+||+|.|||
T Consensus       336 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~dG~l~i~GR~~d~ik~~G~~v~p~eIE  415 (512)
T 3fce_A          336 DGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIE  415 (512)
T ss_dssp             SSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEETTEEEEEEEGGGCEEETTEEECHHHHH
T ss_pred             CCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEecCCEEEEecccCCEEEECCEEECHHHHH
Confidence            4566666666666777776654432100000      0124567777765458999999999999999999999999999


Q ss_pred             HHHccccccccccccccccccc---cceEEeccCC
Q psy8473         255 AALSKISEVDKLSVLCYKPGEV---DQIWEAPSSA  286 (307)
Q Consensus       255 ~~L~~~p~V~~~~vv~~~~~~~---~~~~v~~~~~  286 (307)
                      +.|.+||.|.+++|++.+++..   ..+++++...
T Consensus       416 ~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~  450 (512)
T 3fce_A          416 HHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH  450 (512)
T ss_dssp             HHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred             HHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc
Confidence            9999999999999997765443   3346665543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.43  E-value=1.8e-13  Score=127.72  Aligned_cols=120  Identities=17%  Similarity=0.133  Sum_probs=86.4

Q ss_pred             CCcccCCCCCcccccc-eEEEEeCCCCccccc--c----------cceecCCcceEEEEEeeeccccCCccccccccEEe
Q psy8473          90 GESMLHADNNNEQSND-IAIVLYTSGSTGIPK--E----------YRRMYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYK  156 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~-~a~~~~tsGttG~Pk--g----------~~~~~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~  156 (307)
                      ++.+++.||+||++.. +++.. ..+..|.+.  .          ...+++.|..|||+++   ++.+.   ....+||+
T Consensus       237 g~~v~~~YG~TE~~g~~~~~~~-~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~---~~t~~---~~p~~~y~  309 (443)
T 2y4o_A          237 GIDALDIYGLSEVMGPGVACEC-VETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFT---SLTKE---AMPVIRYR  309 (443)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEC-TTTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEE---ESSCS---SSCCSSEE
T ss_pred             CcCEEeccCchhhcCCeEEecc-CCCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEe---CCCcc---cChhheee
Confidence            5668999999997433 33322 222224332  1          1225678889999997   21110   11357999


Q ss_pred             ecCeEEEE-C-CeE-----EEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473         157 TGDYGRIV-D-DIL-----LYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV  216 (307)
Q Consensus       157 tGD~g~~~-~-g~l-----~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~  216 (307)
                      |||+++++ + |++     ++.||.+|+||++|++|+|.+||+++.++|.|.++++++.+++.....
T Consensus       310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~  376 (443)
T 2y4o_A          310 TRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDR  376 (443)
T ss_dssp             EEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEE
T ss_pred             cCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCce
Confidence            99999995 6 876     899999999999999999999999999999999998887765543333

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.43  E-value=6.5e-15  Score=140.24  Aligned_cols=61  Identities=15%  Similarity=0.134  Sum_probs=53.2

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccccc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVD  277 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~  277 (307)
                      ++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++....
T Consensus       391 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g  452 (517)
T 3r44_A          391 WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG  452 (517)
T ss_dssp             EEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred             CEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccC
Confidence            4666665 457899999999999999999999999999999999999999999987765433

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.42  E-value=2.3e-14  Score=136.39  Aligned_cols=107  Identities=21%  Similarity=0.149  Sum_probs=71.3

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeC------CCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKP------GEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEV  253 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~------~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eI  253 (307)
                      .|..+.++++++++.+.|.+...+......      ...+..++.++|. ..++||+++++||+||+||++|+||+|.||
T Consensus       339 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eI  418 (521)
T 3l8c_A          339 DGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDV  418 (521)
T ss_dssp             TSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHH
T ss_pred             CcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHH
Confidence            466677777777777777766443210000      0012346667775 458999999999999999999999999999


Q ss_pred             HHHHccccccccccccccccc----cccceEEeccCCC
Q psy8473         254 EAALSKISEVDKLSVLCYKPG----EVDQIWEAPSSAG  287 (307)
Q Consensus       254 e~~L~~~p~V~~~~vv~~~~~----~~~~~~v~~~~~~  287 (307)
                      |+.|.+||.|.+++|++.++.    +...+|+++.++.
T Consensus       419 E~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~  456 (521)
T 3l8c_A          419 SQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV  456 (521)
T ss_dssp             HHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred             HHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence            999999999999999976532    3344677776653

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.42  E-value=2e-15  Score=147.75  Aligned_cols=84  Identities=15%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCCCCCCe
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAGSTDSS  292 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~~ds~  292 (307)
                      ++.++|. ..++||+++|+||+||+||++|+||++.|||+.|.+||+|.+++|++.++.   +...+|++++.+...+..
T Consensus       495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~  574 (652)
T 1pg4_A          495 MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE  574 (652)
T ss_dssp             SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             EEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHH
Confidence            4566665 457899999999999999999999999999999999999999999987653   445568887765433322


Q ss_pred             eeeccccc
Q psy8473         293 FIVKSRED  300 (307)
Q Consensus       293 f~~~~~~~  300 (307)
                      ...+++..
T Consensus       575 ~~~~l~~~  582 (652)
T 1pg4_A          575 LYAEVRNW  582 (652)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            23344443

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.39  E-value=3e-14  Score=136.60  Aligned_cols=106  Identities=14%  Similarity=-0.004  Sum_probs=75.2

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL  257 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L  257 (307)
                      |..+.++++++++.+.|.+...+.......   .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus       381 ~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l  460 (548)
T 2d1s_A          381 KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVL  460 (548)
T ss_dssp             CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHH
T ss_pred             CccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHH
Confidence            555666666666666666655443110000   001224566665 4578999999999999999999999999999999


Q ss_pred             ccccccccccccccccc---cccceEEeccCCC
Q psy8473         258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      .+||+|.+++|++.++.   +...+|+++.++.
T Consensus       461 ~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~  493 (548)
T 2d1s_A          461 LQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK  493 (548)
T ss_dssp             HTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred             HhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC
Confidence            99999999999987764   3445677766543

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.38  E-value=4.7e-15  Score=151.41  Aligned_cols=105  Identities=18%  Similarity=0.130  Sum_probs=37.2

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL  257 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L  257 (307)
                      |..+.++++++++.+.|.+...+.......   .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus       421 ~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l  500 (979)
T 3tsy_A          421 GDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALL  500 (979)
T ss_dssp             CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------
T ss_pred             CCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHH
Confidence            666777777777777777766543211000   001224666665 4578999999999999999999999999999999


Q ss_pred             ccccccccccccccccc---cccceEEeccCC
Q psy8473         258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      .+||.|.+++|++.++.   +...+|++..++
T Consensus       501 ~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~  532 (979)
T 3tsy_A          501 IGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD  532 (979)
T ss_dssp             --------------------------------
T ss_pred             HhCCCcceEEEEEecccCCCcEEEEEEEECCC
Confidence            99999999999987664   344457765544

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.36  E-value=7.8e-15  Score=139.35  Aligned_cols=98  Identities=18%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             hHHHHHHhcCCCcceEEEEEeeC---CCcceEEEEeeec-ccCccccccccccc-ccccccCCcccchhhHHHHHccccc
Q psy8473         188 SEVEAALSKLSEVDKLSVLCYKP---GEVDQVSEVTSEE-IRGVDDILLYEGRT-DSQVKIRGNRVDLSEVEAALSKISE  262 (307)
Q Consensus       188 ~eiE~~l~~~p~V~~~~v~~~~~---~~~~~~~~~~~~~-~~~~dg~~~~~gR~-dd~ik~~G~~i~~~eIe~~L~~~p~  262 (307)
                      +++++++.+.|.+...+......   ......++.++|. ..++||+++|+||+ |||||++|+||++.|||+.|.+||+
T Consensus       351 g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~  430 (505)
T 3nyq_A          351 ESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPE  430 (505)
T ss_dssp             CCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTT
T ss_pred             CceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcC
Confidence            44455555666665443311000   0001224666665 45789999999998 5999999999999999999999999


Q ss_pred             cccccccccccc---cccceEEeccC
Q psy8473         263 VDKLSVLCYKPG---EVDQIWEAPSS  285 (307)
Q Consensus       263 V~~~~vv~~~~~---~~~~~~v~~~~  285 (307)
                      |.+++|++.++.   +...+|+++..
T Consensus       431 V~~a~Vv~~~~~~~g~~l~a~vv~~~  456 (505)
T 3nyq_A          431 VREAAVTGEPDPDLGERIVAWIVPAD  456 (505)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred             ccEEEEEeeECCCCCcEEEEEEEECC
Confidence            999999987664   34445777654

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.35  E-value=4.5e-14  Score=136.07  Aligned_cols=70  Identities=26%  Similarity=0.309  Sum_probs=58.5

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      ++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++.   +...+|+++..+
T Consensus       434 ~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~  507 (570)
T 3c5e_A          434 FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQ  507 (570)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGG
T ss_pred             ccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCc
Confidence            4556665 457899999999999999999999999999999999999999999987654   344557776554

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.35  E-value=5e-14  Score=133.74  Aligned_cols=107  Identities=18%  Similarity=0.089  Sum_probs=34.7

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeC--CCcceEEEEeeec-ccCccccccccccc--ccccccCCcccchhhHHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKP--GEVDQVSEVTSEE-IRGVDDILLYEGRT--DSQVKIRGNRVDLSEVEA  255 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~--~~~~~~~~~~~~~-~~~~dg~~~~~gR~--dd~ik~~G~~i~~~eIe~  255 (307)
                      .|..+.++++++++.+.|.+...+......  ......++.++|. ..++||+++|+||+  ||+||++|+||+|.|||+
T Consensus       338 ~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~  417 (509)
T 3ivr_A          338 EDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEG  417 (509)
T ss_dssp             TSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--------------------
T ss_pred             CCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHH
Confidence            466667777777777777776554311000  0011234666665 45789999999999  999999999999999999


Q ss_pred             HHcccccccccccccccccc---ccceEEeccCCC
Q psy8473         256 ALSKISEVDKLSVLCYKPGE---VDQIWEAPSSAG  287 (307)
Q Consensus       256 ~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~~  287 (307)
                      .|.+||+|.+++|++.++..   ...+|+++.++.
T Consensus       418 ~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~  452 (509)
T 3ivr_A          418 ALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGE  452 (509)
T ss_dssp             -----------------------------------
T ss_pred             HHHhCCCceeEEEEeccccccCcEEEEEEEeCCCC
Confidence            99999999999999877643   344577765543

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.34  E-value=2.2e-13  Score=130.84  Aligned_cols=93  Identities=20%  Similarity=0.204  Sum_probs=37.3

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCCC-----cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPGE-----VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEA  255 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~-----~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~  255 (307)
                      |..+.++++++++.+.|.+...+.. .+...     .+..++.++|. ..++||+++|+||+|||||++|+||+|.|||+
T Consensus       366 ~~~~~~g~~GEl~v~g~~v~~GY~~-~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~  444 (562)
T 3ite_A          366 NEHVKKGMAGELVIEGSLVANGYLN-RPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSE  444 (562)
T ss_dssp             SCBCCTTSCEEEEEESTTSCCEESS-CTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC------------------
T ss_pred             CCCCCCCCceEEEEeccccchhhCC-CccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHH
Confidence            5667777778888888888765532 11111     12336677775 45799999999999999999999999999999


Q ss_pred             HHccc-ccccccccccccccc
Q psy8473         256 ALSKI-SEVDKLSVLCYKPGE  275 (307)
Q Consensus       256 ~L~~~-p~V~~~~vv~~~~~~  275 (307)
                      .|.+| |.+.+++|+..++..
T Consensus       445 ~l~~~~~~~~~~~v~~~~~~~  465 (562)
T 3ite_A          445 VIRSLSPTDIDVVTLLLNHPG  465 (562)
T ss_dssp             ---------------------
T ss_pred             HHHhcCCCceeEEEEEecCCC
Confidence            99999 778888877665543

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.34  E-value=3.5e-14  Score=139.18  Aligned_cols=71  Identities=21%  Similarity=0.323  Sum_probs=58.6

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~~  287 (307)
                      ++.++|. ..++||+++|+||+||+||++|+||++.|||+.|.+||+|.+++|++.++   ++...+|++++++.
T Consensus       504 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~  578 (663)
T 1ry2_A          504 YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS  578 (663)
T ss_dssp             SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC---
T ss_pred             EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCC
Confidence            4666665 45789999999999999999999999999999999999999999998765   34555688877654

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.34  E-value=1.2e-14  Score=138.70  Aligned_cols=105  Identities=18%  Similarity=0.124  Sum_probs=67.8

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeCCC---cceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPGE---VDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA  256 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~---~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~  256 (307)
                      .|..+.++++++++.+.|.+...+.. .+...   ....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.
T Consensus       369 ~g~~~~~g~~GEl~v~g~~~~~gY~~-~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~  447 (529)
T 2v7b_A          369 AGHAVPDGEVGDLYIKGPSAAVMYWN-NREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMV  447 (529)
T ss_dssp             TSCBCCTTSCEEEEEECTTCCCCBTT-CHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHH
T ss_pred             CCCCCCCCCccEEEEecCCcccccCC-ChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHH
Confidence            35556666666666666665443211 00000   00124556664 557899999999999999999999999999999


Q ss_pred             Hcccccccccccccccc--ccccceEEeccCC
Q psy8473         257 LSKISEVDKLSVLCYKP--GEVDQIWEAPSSA  286 (307)
Q Consensus       257 L~~~p~V~~~~vv~~~~--~~~~~~~v~~~~~  286 (307)
                      |.+||+|.+++|++...  ++...+|+++..+
T Consensus       448 l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~  479 (529)
T 2v7b_A          448 LVQHDAVLEAAVVGVDHGGLVKTRAFVVLKRE  479 (529)
T ss_dssp             HTTSTTEEEEEEEEEEETTEEEEEEEEEECTT
T ss_pred             HHhCCCcceEEEEEecCCCceEEEEEEEecCC
Confidence            99999999999998732  2334457776544

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.32  E-value=1.6e-13  Score=130.18  Aligned_cols=71  Identities=18%  Similarity=0.186  Sum_probs=59.6

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      ++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++.   +...+|+++..+.
T Consensus       380 ~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~  454 (504)
T 1t5h_X          380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE  454 (504)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC
T ss_pred             ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc
Confidence            4666665 457899999999999999999999999999999999999999999987764   3445677776543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.32  E-value=2.1e-13  Score=129.09  Aligned_cols=67  Identities=7%  Similarity=0.068  Sum_probs=56.0

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEec
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAP  283 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~  283 (307)
                      ++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++..   ...+|++.
T Consensus       376 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~  446 (501)
T 3ipl_A          376 YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS  446 (501)
T ss_dssp             EEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             ceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEe
Confidence            4566665 4578999999999999999999999999999999999999999999877654   33445554

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.29  E-value=9.7e-13  Score=123.69  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=73.0

Q ss_pred             ChhhHHHhhhhhhccCCCCCcccCCCCCcccccceEEEEe----------------------------CCCCccccccc-
Q psy8473          72 SLPQLRLLSASLSHNNIPGESMLHADNNNEQSNDIAIVLY----------------------------TSGSTGIPKEY-  122 (307)
Q Consensus        72 ~~~~l~~~~~~~~~~~~~~~~~~~~yg~te~~~~~a~~~~----------------------------tsGttG~Pkg~-  122 (307)
                      +.+.+..+...+....+|+..+++.||+||++..+++...                            ..++.|+|.++ 
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~~~  403 (480)
T 3t5a_A          324 QAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPI  403 (480)
T ss_dssp             CHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSSSE
T ss_pred             CHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccCCE
Confidence            3344444444444444577789999999999876554321                            12467777651 


Q ss_pred             --------ceecCCcceEEEEEe---eeccccCCcc----cc-----------ccccEEeecCeEEEECCeEEEeee
Q psy8473         123 --------RRMYKTGDYGRIVDD---IHRCWSSGDR----AI-----------KYRRMYKTGDYGRIVDDILLYEGR  173 (307)
Q Consensus       123 --------~~~~~~g~~Gel~v~---v~~gy~~~~~----~~-----------~~~~~~~tGD~g~~~~g~l~~~GR  173 (307)
                              ..+++.|..|||+++   ++.|||++++    ..           ..++||+|||+|++++|+++++||
T Consensus       404 ~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~ddG~l~~~GR  480 (480)
T 3t5a_A          404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTDGKMFIIGR  480 (480)
T ss_dssp             EEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEETTEEEECC-
T ss_pred             EEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEECCEEEEeCC
Confidence                    236788999999999   9999999987    11           146799999999999999999998

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.26  E-value=6e-14  Score=134.28  Aligned_cols=68  Identities=15%  Similarity=0.126  Sum_probs=44.9

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEecc
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPS  284 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~  284 (307)
                      ++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|.+||+|.+++|++.++..   ...+|+++.
T Consensus       413 ~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~  484 (541)
T 1v25_A          413 FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR  484 (541)
T ss_dssp             CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---
T ss_pred             CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC
Confidence            4556665 4578999999999999999999999999999999999999999999876643   334465554

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.21  E-value=1.1e-12  Score=126.50  Aligned_cols=105  Identities=13%  Similarity=-0.008  Sum_probs=72.5

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEee-----------CCCcceEEEEeeecccCcccccccccccccccccCCcccch
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYK-----------PGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDL  250 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~-----------~~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~  250 (307)
                      |..+.++++++++.+.|.+...+.....           +...+..++.++|...-.||+++|+||+|||||++|+||+|
T Consensus       391 ~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ddG~l~~~GR~dd~Ik~~G~~v~p  470 (590)
T 3kxw_A          391 LIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHYP  470 (590)
T ss_dssp             CCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEETTEEEEEEESSCHHHHHHHTTHH
T ss_pred             CcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEECCEEEEEcCccceEEECCEecCH
Confidence            5666677777777777777654421100           00012236677776554499999999999999999999999


Q ss_pred             hhHHHHH-ccccccc--ccccccccccc--ccceEEeccCC
Q psy8473         251 SEVEAAL-SKISEVD--KLSVLCYKPGE--VDQIWEAPSSA  286 (307)
Q Consensus       251 ~eIe~~L-~~~p~V~--~~~vv~~~~~~--~~~~~v~~~~~  286 (307)
                      .|||+.| ..||.|.  +++|++.++..  ...+++++..+
T Consensus       471 ~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~  511 (590)
T 3kxw_A          471 QDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNR  511 (590)
T ss_dssp             HHHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCT
T ss_pred             HHHHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccc
Confidence            9999999 8899998  78888765543  33346655543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.17  E-value=3.3e-10  Score=105.29  Aligned_cols=68  Identities=16%  Similarity=0.068  Sum_probs=54.6

Q ss_pred             EEEeeecc-cCccc------c---cccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEec
Q psy8473         217 SEVTSEEI-RGVDD------I---LLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAP  283 (307)
Q Consensus       217 ~~~~~~~~-~~~dg------~---~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~  283 (307)
                      ++.++|.. .+++|      +   +.++||.||+||++|++|+|.|||+.|.+||+|.+++|+..++   ++...+|+++
T Consensus       300 ~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~  379 (436)
T 3qov_A          300 RYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVEL  379 (436)
T ss_dssp             SEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEE
Confidence            45666653 35666      5   7999999999999999999999999999999999999987665   3444557776


Q ss_pred             c
Q psy8473         284 S  284 (307)
Q Consensus       284 ~  284 (307)
                      .
T Consensus       380 ~  380 (436)
T 3qov_A          380 S  380 (436)
T ss_dssp             C
T ss_pred             c
Confidence            6

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=98.70  E-value=6.6e-10  Score=105.23  Aligned_cols=107  Identities=15%  Similarity=0.013  Sum_probs=76.4

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeC---CCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKP---GEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL  257 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~---~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L  257 (307)
                      |..+.++++++++.+.|.+...+......   ......++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus       339 g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  418 (503)
T 4fuq_A          339 GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEI  418 (503)
T ss_dssp             CCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHH
T ss_pred             CCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHH
Confidence            56667777777777777766543211000   0001224666665 4578999999999999999999999999999999


Q ss_pred             ccccccccccccccccc---cccceEEeccCCCC
Q psy8473         258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSAGS  288 (307)
Q Consensus       258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~  288 (307)
                      .+||+|.+++|++.++.   +...+|++...+..
T Consensus       419 ~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~  452 (503)
T 4fuq_A          419 DAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT  452 (503)
T ss_dssp             HTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred             HhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC
Confidence            99999999999987654   34445777665443

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=98.63  E-value=4.3e-10  Score=107.39  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=70.2

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL  257 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L  257 (307)
                      |..+.++++++++.+.|.+...+.......   .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.|
T Consensus       370 ~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l  449 (539)
T 1mdb_A          370 DRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL  449 (539)
T ss_dssp             SCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHH
T ss_pred             CCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHH
Confidence            445555555555555555543322100000   001124566665 4578999999999999999999999999999999


Q ss_pred             ccccccccccccccccc---cccceEEecc
Q psy8473         258 SKISEVDKLSVLCYKPG---EVDQIWEAPS  284 (307)
Q Consensus       258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~  284 (307)
                      .+||+|.+++|++.++.   +...+|+++.
T Consensus       450 ~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~  479 (539)
T 1mdb_A          450 LAHPAVHDAAMVSMPDQFLGERSCVFIIPR  479 (539)
T ss_dssp             TTSTTEEEEEEEEEEETTTEEEEEEEEEES
T ss_pred             HhCCCcceEEEEeccccccCceEEEEEEEC
Confidence            99999999999987764   3344577665

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=98.60  E-value=7.6e-10  Score=105.82  Aligned_cols=105  Identities=13%  Similarity=0.031  Sum_probs=33.0

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA  256 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~  256 (307)
                      .|..+.++++++++.+.|.+...+.......   .....++.++|. ..++||+++|+||+|||||++|+||+|.|||+.
T Consensus       378 ~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~  457 (544)
T 3o83_A          378 QYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKL  457 (544)
T ss_dssp             TSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC------------------
T ss_pred             CCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHH
Confidence            3555566666666666666544332110000   001234666665 457899999999999999999999999999999


Q ss_pred             Hccccccccccccccccc---cccceEEeccC
Q psy8473         257 LSKISEVDKLSVLCYKPG---EVDQIWEAPSS  285 (307)
Q Consensus       257 L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~  285 (307)
                      |.+||+|.+++|++.++.   +...+|++...
T Consensus       458 l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~  489 (544)
T 3o83_A          458 ILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN  489 (544)
T ss_dssp             --------------------------------
T ss_pred             HHhCCCccEEEEEeccCCCCCceEEEEEEeCC
Confidence            999999999999987664   34445666554

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.53  E-value=2.4e-08  Score=74.49  Aligned_cols=53  Identities=11%  Similarity=0.115  Sum_probs=43.2

Q ss_pred             cccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCCC
Q psy8473         235 GRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSAG  287 (307)
Q Consensus       235 gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~  287 (307)
                      .|+||||+++|.|++|.|||+.|.+||+|.++++++.++.   +...++++...+.
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~   56 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF   56 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc
Confidence            3899999999999999999999999999999988876553   3334566665544

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=98.48  E-value=4.4e-09  Score=102.04  Aligned_cols=105  Identities=12%  Similarity=0.080  Sum_probs=71.7

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEEEeeCC---CcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHH
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVLCYKPG---EVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAA  256 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~---~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~  256 (307)
                      .|..+.++++++++.+.|.+...+.......   .....++.++|. ..++||.+.|+||+|||||++|+||+|.|||+.
T Consensus       373 ~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~  452 (617)
T 3rg2_A          373 EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENL  452 (617)
T ss_dssp             TSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHH
T ss_pred             CCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHH
Confidence            3555566666666666666544332100000   001224666665 457899999999999999999999999999999


Q ss_pred             Hccccccccccccccccc---cccceEEeccC
Q psy8473         257 LSKISEVDKLSVLCYKPG---EVDQIWEAPSS  285 (307)
Q Consensus       257 L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~  285 (307)
                      |.+||+|.+++|+..++.   +...+|++...
T Consensus       453 l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~  484 (617)
T 3rg2_A          453 LLRHPAVIYAALVSMEDELMGEKSCAYLVVKE  484 (617)
T ss_dssp             HTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred             HHhCCCeeEEEEEeccCcccCeeEEEEEEeCC
Confidence            999999999999977653   33344666543

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.23  E-value=1.6e-06  Score=64.51  Aligned_cols=46  Identities=13%  Similarity=0.240  Sum_probs=41.2

Q ss_pred             eecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         172 GRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       172 GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      .|.||+|+++|.|++|.+||+++.++|+|.++++++.++...+..+
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~   46 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEM   46 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEE
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeE
Confidence            3889999999999999999999999999999999988877666555

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=98.06  E-value=2.8e-06  Score=78.67  Aligned_cols=69  Identities=17%  Similarity=0.103  Sum_probs=53.5

Q ss_pred             EEeeecc-cCc-cccc-----ccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccCC
Q psy8473         218 EVTSEEI-RGV-DDIL-----LYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSSA  286 (307)
Q Consensus       218 ~~~~~~~-~~~-dg~~-----~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~  286 (307)
                      +.++|.. .++ +|++     .++||.||+||++|++|+|.|||+.|.+||+|.+++|+..++   ++...+++++.++
T Consensus       306 y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~  384 (437)
T 2y27_A          306 YRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPE  384 (437)
T ss_dssp             EEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTT
T ss_pred             eecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCC
Confidence            4555543 345 5886     899999999999999999999999999999999998887543   3344456666544

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=97.99  E-value=6.3e-07  Score=81.05  Aligned_cols=65  Identities=9%  Similarity=0.060  Sum_probs=47.6

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHH---cccccccccccc-cccccc---ccceEEec
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL---SKISEVDKLSVL-CYKPGE---VDQIWEAP  283 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L---~~~p~V~~~~vv-~~~~~~---~~~~~v~~  283 (307)
                      +.++|. ..+++| +.|+||+|||||++|+||+|.|||+.|   .+||+|.+++|+ ..++..   ...+|++.
T Consensus       230 ~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~  302 (358)
T 4gs5_A          230 VQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIEN  302 (358)
T ss_dssp             EEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEES
T ss_pred             eecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEEC
Confidence            344443 335667 667899999999999999999999876   568999999887 455543   33445554

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=97.99  E-value=3.3e-06  Score=78.26  Aligned_cols=68  Identities=15%  Similarity=0.027  Sum_probs=52.8

Q ss_pred             EEeeec-ccCcc-ccc-----ccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccC
Q psy8473         218 EVTSEE-IRGVD-DIL-----LYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSS  285 (307)
Q Consensus       218 ~~~~~~-~~~~d-g~~-----~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~  285 (307)
                      +.++|. ..+++ |++     .++||.||+||++|++|+|.|||+.|.+||+|.+++|+..++   ++...+++++.+
T Consensus       308 y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~  385 (443)
T 2y4o_A          308 YRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRS  385 (443)
T ss_dssp             EEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECH
T ss_pred             eecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECC
Confidence            455554 33467 887     899999999999999999999999999999999988876543   233445666543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=97.25  E-value=0.00018  Score=64.86  Aligned_cols=85  Identities=8%  Similarity=0.020  Sum_probs=48.2

Q ss_pred             CCCCCcccCCCCCcccccceEEEEeCCC-Ccccc------ccc----------ceecCCcceEEEEEe-eeccccCCccc
Q psy8473          87 NIPGESMLHADNNNEQSNDIAIVLYTSG-STGIP------KEY----------RRMYKTGDYGRIVDD-IHRCWSSGDRA  148 (307)
Q Consensus        87 ~~~~~~~~~~yg~te~~~~~a~~~~tsG-ttG~P------kg~----------~~~~~~g~~Gel~v~-v~~gy~~~~~~  148 (307)
                      .+|++.+++.||+||++...   ....+ +.|.|      ...          ..+++.|..|||++. +....      
T Consensus       255 ~~p~~~v~~~YG~TE~~~~~---~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~------  325 (369)
T 3hgu_A          255 ILPDCEFSASYGSTSALGVS---RSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWA------  325 (369)
T ss_dssp             TCTTSEEEEEEEEGGGTEEE---EECCBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTE------
T ss_pred             hCCCcEEEcccCchhhhcce---eccccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCccc------
Confidence            36788999999999987432   22334 37877      422          236788999999998 43322      


Q ss_pred             cccccEEeecCeEEE-E--CCe-------EEEeeecCCeEEECC
Q psy8473         149 IKYRRMYKTGDYGRI-V--DDI-------LLYEGRTDSQVKIRG  182 (307)
Q Consensus       149 ~~~~~~~~tGD~g~~-~--~g~-------l~~~GR~~~~i~~~G  182 (307)
                        .-..|+|||.+.. .  +|.       +..++|.+++.++.|
T Consensus       326 --~l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g  367 (369)
T 3hgu_A          326 --FYPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG  367 (369)
T ss_dssp             --EEEEEEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred             --ccccccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence              1235889999877 2  332       233455555655555

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=96.22  E-value=0.0016  Score=60.52  Aligned_cols=23  Identities=35%  Similarity=0.356  Sum_probs=14.9

Q ss_pred             cccceEEEEeCCCCcccccccce
Q psy8473         102 QSNDIAIVLYTSGSTGIPKEYRR  124 (307)
Q Consensus       102 ~~~~~a~~~~tsGttG~Pkg~~~  124 (307)
                      .++++++++|||||||.|||+++
T Consensus       181 ~~~d~a~i~~TSGTTG~PKgV~~  203 (480)
T 3t5a_A          181 EYPSTAYLQYTSGSTRTPAGVVM  203 (480)
T ss_dssp             SCCSEEEEECC------CCCEEE
T ss_pred             CCCceEEEEecCCCCCCCcEEEE
Confidence            45689999999999999999988

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=94.89  E-value=0.0064  Score=54.47  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=17.2

Q ss_pred             cccceEEEEeCCCCcccccccce
Q psy8473         102 QSNDIAIVLYTSGSTGIPKEYRR  124 (307)
Q Consensus       102 ~~~~~a~~~~tsGttG~Pkg~~~  124 (307)
                      .+.++++++|||||||.|||++.
T Consensus        89 ~~~~~a~i~~TSGTTG~PKgv~~  111 (369)
T 3hgu_A           89 PADSHPQVYESGGTTGAPKYVVA  111 (369)
T ss_dssp             CTTCCCEEEEECC---CCEEEEE
T ss_pred             CccccEEEEECCCCCCCCCEEEE
Confidence            35678999999999999999877

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=94.76  E-value=0.031  Score=53.44  Aligned_cols=62  Identities=18%  Similarity=0.261  Sum_probs=49.8

Q ss_pred             ecCCcceEEEEEeeeccccCCccccccccEEeecCeEEEE-----CCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473         125 MYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIV-----DDILLYEGRTDSQVKIRGNRVDLSEVEAALSK  196 (307)
Q Consensus       125 ~~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~tGD~g~~~-----~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~  196 (307)
                      .+..|..++|++....|+|.          |++||+.++.     ...+.|+||.++++++.|+++.+.+++.++..
T Consensus       392 eVe~G~~YelViTt~~GL~R----------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~  458 (609)
T 4b2g_A          392 HVEVGKEYELVITTYAGLYR----------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN  458 (609)
T ss_dssp             GCCTTCEEEEEEECTTSCCS----------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             HcCCCCeEEEehhhhhhhhh----------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence            45677778888863344432          8999999984     24688999999999999999999999988874

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=94.31  E-value=0.051  Score=51.80  Aligned_cols=62  Identities=15%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             cCCcceEEEEEeeeccccCCccccccccEEeecCeEEEE-----CCeEEEeeecCCeEEECCeeechhHHHHHHhcC
Q psy8473         126 YKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIV-----DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKL  197 (307)
Q Consensus       126 ~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~tGD~g~~~-----~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~  197 (307)
                      +..|..++|++....|.|          -|++||+.++.     ...+.|+||.++++++.|+++.+.++++++...
T Consensus       381 Ve~G~~YelViTt~~GL~----------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a  447 (581)
T 4eql_A          381 VKLGCTYEPVVTNFAGLY----------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA  447 (581)
T ss_dssp             CCTTCEEEEEEECSSSCC----------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred             cCCCceEEEEEeecccee----------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence            456777788776222322          28999999883     346889999999999999999999999988754

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=93.30  E-value=0.089  Score=50.07  Aligned_cols=62  Identities=15%  Similarity=0.171  Sum_probs=48.2

Q ss_pred             ecCCcceEEEEEeeeccccCCccccccccEEeecCeEEEEC-----CeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473         125 MYKTGDYGRIVDDIHRCWSSGDRAIKYRRMYKTGDYGRIVD-----DILLYEGRTDSQVKIRGNRVDLSEVEAALSK  196 (307)
Q Consensus       125 ~~~~g~~Gel~v~v~~gy~~~~~~~~~~~~~~tGD~g~~~~-----g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~  196 (307)
                      .+..|..++|.+....|.|          -|++||..++..     ..+.|+||.++++++.|+++.+.+++.++..
T Consensus       387 eve~G~~YelviTt~~GL~----------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~  453 (581)
T 4epl_A          387 QVKIGEEYEVVITNYAGLY----------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES  453 (581)
T ss_dssp             GCCTTCEEEEEEESTTSCS----------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             HcCCCCeEEEEEeecccee----------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence            4567777888876222322          289999998841     3678999999999999999999999988865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	6e-11
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-06
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-10
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-05
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-09
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	4e-04
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	0.001
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-09
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-04
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-09
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	9e-05
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	5e-07
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	4e-05
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-06
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-05

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 60.7 bits (146), Expect = 6e-11
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 136 DDIHRCWSSGDRAIKYRRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAAL 194
            ++       +  +   ++YKTGD  R + D  + Y GR D+QVKIRG+RV+L EVE+ L
Sbjct: 374 PELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESIL 433

Query: 195 SKLSEVDKLSVLCYKPGEVDQV--------SEVTSEEIR 225
            K   + + +V  +K  +              +  E++R
Sbjct: 434 LKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLR 472

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAG 287
           D  + Y GR D+QVKIRG+RV+L EVE+ L K   + + +V  +K  +      A     
Sbjct: 404 DGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCA----- 458

Query: 288 STDSSFIVKSREDRAEE 304
                + V  +    E+
Sbjct: 459 -----YFVSEKHIPLEQ 470

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 57.6 bits (138), Expect = 5e-10
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 146 DRAIKYRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLS 204
           +  I       +GD     +D   +   R  S +K +G +V  +E+E+ L +   +    
Sbjct: 406 NALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 465

Query: 205 VLCYKPGEVDQV----------SEVTSEEIR 225
           V      +  ++            +T +EI 
Sbjct: 466 VAGLPDDDAGELPAAVVVLEHGKTMTEKEIV 496

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
           D+      R  S +K +G +V  +E+E+ L +   +
Sbjct: 426 DEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI 461

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 14/90 (15%)

Query: 150 KYRRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV-------- 200
            ++ MY +GD  R  +D      GR D  + + G+R+  +E+E+AL    ++        
Sbjct: 487 TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 546

Query: 201 -----DKLSVLCYKPGEVDQVSEVTSEEIR 225
                 +           ++ S     E+R
Sbjct: 547 PHAIKGQAIYAYVTLNHGEEPSPELYAEVR 576

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAG 287
           D      GR D  + + G+R+  +E+E+AL    ++ + +V+        Q   A     
Sbjct: 503 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA----- 557

Query: 288 STDSSFIVKSREDRAEEELV 307
                ++  +  +    EL 
Sbjct: 558 -----YVTLNHGEEPSPELY 572

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 102 QSNDIAIVLYTSGSTGIPK 120
            + D   +LYTSGSTG PK
Sbjct: 250 NAEDPLFILYTSGSTGKPK 268

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 150 KYRRMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCY 208
            Y   Y TGD      D  +   GR D  V + G+R+  +E+EAA+ +   V + +V+ +
Sbjct: 477 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGF 536

Query: 209 KPGEVDQV 216
                 Q 
Sbjct: 537 NDDLTGQA 544

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQ 278
           D  +   GR D  V + G+R+  +E+EAA+ +   V + +V+ +      Q
Sbjct: 493 DGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQ 543

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 54.9 bits (131), Expect = 4e-09
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 148 AIKYRRMYKTGDYGRIVDDILLY-EGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVL 206
           A+     ++TGD     ++  +  + R    +K  G  +   ++E AL    +V + +V+
Sbjct: 400 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 459

Query: 207 CYKPGEVDQV---------SEVTSEEIR 225
                +  +           + T EE+ 
Sbjct: 460 AIPHPKWQERPLAVVVPRGEKPTPEELN 487

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 41.4 bits (96), Expect = 9e-05
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 10/80 (12%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAG 287
           +  +  + R    +K  G  +   ++E AL    +V + +V+     +  +   A     
Sbjct: 418 EGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLA----- 472

Query: 288 STDSSFIVKSREDRAEEELV 307
                 +V   E    EEL 
Sbjct: 473 -----VVVPRGEKPTPEELN 487

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 153 RMYKTGDYGRIVDD-ILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEV 200
             Y+T D      +  +   GR D  +   G  +  SE+E  L     V
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEV 263
           +  +   GR D  +   G  +  SE+E  L     V
Sbjct: 392 EGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 17/125 (13%)

Query: 118 IPKEYRRMYKTGDYGRIV-------DDIHRCWSSGDRAIKYRRMYKTGDYGRIVDD-ILL 169
           +  ++ R  K G+ G ++          ++       +      Y+TGD  R+  D  ++
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV 424

Query: 170 YEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV---------SEVT 220
            EGR   Q+   G +V   EVE  L     V   +++      + +              
Sbjct: 425 VEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK 484

Query: 221 SEEIR 225
           + E++
Sbjct: 485 AAELK 489

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 10/80 (12%)

Query: 228 DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVDQIWEAPSSAG 287
           D  ++ EGR   Q+   G +V   EVE  L     V   +++       DQ        G
Sbjct: 420 DGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMV----SMPDQFL------G 469

Query: 288 STDSSFIVKSREDRAEEELV 307
                FI+   E     EL 
Sbjct: 470 ERSCVFIIPRDEAPKAAELK 489

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.86
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.82
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.8
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.8
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.75
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.73
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.73
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.49
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.43
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.2
d1amua_	514	Phenylalanine activating domain of gramicidin synt	98.54
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	98.46
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	98.46
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	98.33

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.86  E-value=9.5e-22  Score=185.08  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=90.8

Q ss_pred             cCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcC
Q psy8473         126 YKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKL  197 (307)
Q Consensus       126 ~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~  197 (307)
                      ++.|..|||+++   ++.||+++++    ....++||+|||+|++ ++|.+++.||.+|+||++|++|+|.+||+.+.++
T Consensus       379 ~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~  458 (541)
T d1lcia_         379 LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH  458 (541)
T ss_dssp             CCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTS
T ss_pred             CCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhC
Confidence            456778999999   9999999876    3456889999999999 5899999999999999999999999999999999


Q ss_pred             CCcceEEEEEeeCCCcceEEEEeeecccCcccccccccccccccccCCcccchhhHHHHHccc
Q psy8473         198 SEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKI  260 (307)
Q Consensus       198 p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~  260 (307)
                      |.|.++++++.+++..++.+.+.             +      +...|..+...+|.+.++++
T Consensus       459 p~V~~~~v~~~~~~~~g~~~~a~-------------v------~~~~~~~~~~~~l~~~~~~~  502 (541)
T d1lcia_         459 PNIFDAGVAGLPDDDAGELPAAV-------------V------VLEHGKTMTEKEIVDYVASQ  502 (541)
T ss_dssp             TTEEEEEEEEEEETTTEEEEEEE-------------E------EECTTCCCCHHHHHHHHHHH
T ss_pred             CCccEEEEEEEECCCCCEEEEEE-------------E------EECCCCCCCHHHHHHHHHHh
Confidence            99999999999887776665222             2      11234456677888887764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.82  E-value=3.3e-20  Score=173.58  Aligned_cols=93  Identities=32%  Similarity=0.449  Sum_probs=83.6

Q ss_pred             ecCCcceEEEEEe---eeccccCCcc----------ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHH
Q psy8473         125 MYKTGDYGRIVDD---IHRCWSSGDR----------AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEV  190 (307)
Q Consensus       125 ~~~~g~~Gel~v~---v~~gy~~~~~----------~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~ei  190 (307)
                      +++.|..|||+++   ++.|||+++.          ..+.++||+|||+|+++ +|++++.||.+|+|+++|++|+|.+|
T Consensus       350 ~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~I  429 (514)
T d1amua_         350 LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEV  429 (514)
T ss_dssp             BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHH
T ss_pred             ecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHH
Confidence            4677889999998   9999999887          12457899999999994 89999999999999999999999999


Q ss_pred             HHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         191 EAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       191 E~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      |+.+.++|.|.+++|++.++...+..+
T Consensus       430 E~~l~~~~~V~~~~V~~~~~~~~g~~~  456 (514)
T d1amua_         430 ESILLKHMYISETAVSVHKDHQEQPYL  456 (514)
T ss_dssp             HHHHTTSTTEEEEEEEEEECTTSCEEE
T ss_pred             HHHHHhCCCccEEEEEEEECCCCCEEE
Confidence            999999999999999999988777666

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.80  E-value=3.2e-20  Score=179.16  Aligned_cols=128  Identities=20%  Similarity=0.209  Sum_probs=107.9

Q ss_pred             CCcccCCCCCcccccceEEEE-----eCCCCcccccccce---------ecCCcceEEEEEe-----eeccccCCcc---
Q psy8473          90 GESMLHADNNNEQSNDIAIVL-----YTSGSTGIPKEYRR---------MYKTGDYGRIVDD-----IHRCWSSGDR---  147 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~-----~tsGttG~Pkg~~~---------~~~~g~~Gel~v~-----v~~gy~~~~~---  147 (307)
                      ++.+++.||+||++..++...     ...|+.|+|...+.         +++.+..|||+++     ++.+||++++   
T Consensus       402 ~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~  481 (643)
T d1pg4a_         402 KCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFE  481 (643)
T ss_dssp             CSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHH
T ss_pred             CceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecCCCcccccccCChhhch
Confidence            566899999999876544322     24689999985433         5678889999998     6789999877   


Q ss_pred             ---ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 ---AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 ---~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                         ....++||+|||+|++ ++|+++++||.+++||++|++|+|.|||+++.+||.|.+++|++.+++..++.+
T Consensus       482 ~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~  555 (643)
T d1pg4a_         482 QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI  555 (643)
T ss_dssp             HHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEE
T ss_pred             hhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEE
Confidence               2345889999999999 599999999999999999999999999999999999999999999988777665

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=1.1e-19  Score=170.49  Aligned_cols=93  Identities=24%  Similarity=0.373  Sum_probs=83.0

Q ss_pred             ecCCcceEEEEEe---eeccccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473         125 MYKTGDYGRIVDD---IHRCWSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSK  196 (307)
Q Consensus       125 ~~~~g~~Gel~v~---v~~gy~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~  196 (307)
                      +++.+..|||+++   ++.||++++.    ....++||+|||++++ ++|++++.||.++++|++|++|+|.+||+.+.+
T Consensus       372 ~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~  451 (536)
T d1mdba_         372 DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA  451 (536)
T ss_dssp             BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTT
T ss_pred             eecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHh
Confidence            4567778999998   9999999877    4456789999999999 599999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCcceEE
Q psy8473         197 LSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       197 ~p~V~~~~v~~~~~~~~~~~~  217 (307)
                      +|+|.+++|++.+++..++.+
T Consensus       452 ~p~V~~a~vvg~~~~~~g~~~  472 (536)
T d1mdba_         452 HPAVHDAAMVSMPDQFLGERS  472 (536)
T ss_dssp             STTEEEEEEEEEEETTTEEEE
T ss_pred             CCCccEEEEEEEEcCCCCeEE
Confidence            999999999999887766554

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.75  E-value=3.5e-18  Score=158.07  Aligned_cols=115  Identities=15%  Similarity=0.175  Sum_probs=90.6

Q ss_pred             ecCCcceEEEEEe----eeccccCCcc---ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhc
Q psy8473         125 MYKTGDYGRIVDD----IHRCWSSGDR---AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSK  196 (307)
Q Consensus       125 ~~~~g~~Gel~v~----v~~gy~~~~~---~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~  196 (307)
                      .++.|..|++.+.    ...+|++++.   ....++||+|||+|+++ +|+++++||.+|+||++|++|+|.+||+.+.+
T Consensus       344 ~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~  423 (503)
T d3cw9a1         344 IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT  423 (503)
T ss_dssp             BCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTT
T ss_pred             ccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHh
Confidence            3556777877766    5667777765   23357899999999994 99999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCcceEEEEeeecccCcccccccccccccccccCCcccchhhHHHHHc
Q psy8473         197 LSEVDKLSVLCYKPGEVDQVSEVTSEEIRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALS  258 (307)
Q Consensus       197 ~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~  258 (307)
                      +|.|.+++|++.+++..++.+             ++|+.      -..|..++..++.+++.
T Consensus       424 ~p~V~~~~v~~~~~~~~g~~~-------------~a~v~------~~~~~~~~~~~l~~~~~  466 (503)
T d3cw9a1         424 APGVTEVVVIGLADQRWGQSV-------------TACVV------PRLGETLSADALDTFCR  466 (503)
T ss_dssp             STTEEEEEEEEEEETTTEEEE-------------EEEEE------ECTTCCCCHHHHHHHHH
T ss_pred             CCCccEEEEEEEECCCCCeEE-------------EEEEE------eCCCCCCCHHHHHHHHH
Confidence            999999999999887766555             22221      12345677788888774

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=2.7e-18  Score=161.34  Aligned_cols=128  Identities=16%  Similarity=0.207  Sum_probs=96.0

Q ss_pred             CCcccCCCCCcccccceEEEEe--------------CCCCcccccccce---------ec--CCcceEEEEEe---eecc
Q psy8473          90 GESMLHADNNNEQSNDIAIVLY--------------TSGSTGIPKEYRR---------MY--KTGDYGRIVDD---IHRC  141 (307)
Q Consensus        90 ~~~~~~~yg~te~~~~~a~~~~--------------tsGttG~Pkg~~~---------~~--~~g~~Gel~v~---v~~g  141 (307)
                      +.++++.||+||++..++....              .+|+.|+|.....         ++  ..+..|||+++   ++.|
T Consensus       310 ~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~g  389 (534)
T d1v25a_         310 GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG  389 (534)
T ss_dssp             TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSS
T ss_pred             CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCeeEEEEEcCCcccce
Confidence            4567999999999876554321              1378888874333         22  33567999999   9999


Q ss_pred             ccCCcc----ccccccEEeecCeEEE-ECCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceE
Q psy8473         142 WSSGDR----AIKYRRMYKTGDYGRI-VDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQV  216 (307)
Q Consensus       142 y~~~~~----~~~~~~~~~tGD~g~~-~~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~  216 (307)
                      ||++++    ....++||+|||+|++ ++|.+++.||.+++||++|++|+|.+||+.+.++|.|.+++|++.+++..+..
T Consensus       390 Y~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~  469 (534)
T d1v25a_         390 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER  469 (534)
T ss_dssp             CBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEE
T ss_pred             ecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeE
Confidence            999987    3456889999999999 58999999999999999999999999999999999999999999988877766


Q ss_pred             E
Q psy8473         217 S  217 (307)
Q Consensus       217 ~  217 (307)
                      +
T Consensus       470 l  470 (534)
T d1v25a_         470 P  470 (534)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.1e-18  Score=168.13  Aligned_cols=127  Identities=20%  Similarity=0.229  Sum_probs=103.2

Q ss_pred             CcccCCCCCcccccceEEEEe------CCCCcccccccce-----------ecCCcceEEEEEe-----eeccccCCcc-
Q psy8473          91 ESMLHADNNNEQSNDIAIVLY------TSGSTGIPKEYRR-----------MYKTGDYGRIVDD-----IHRCWSSGDR-  147 (307)
Q Consensus        91 ~~~~~~yg~te~~~~~a~~~~------tsGttG~Pkg~~~-----------~~~~g~~Gel~v~-----v~~gy~~~~~-  147 (307)
                      ..+++.||+||++........      ..|+.|.|.....           ..+.+..|+|+++     ++.|||++++ 
T Consensus       390 ~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~  469 (640)
T d1ry2a_         390 IPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDR  469 (640)
T ss_dssp             SCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHH
T ss_pred             ceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHH
Confidence            457899999998766554322      3588998875333           2234456999987     7899999987 


Q ss_pred             -----ccccccEEeecCeEEEE-CCeEEEeeecCCeEEECCeeechhHHHHHHhcCCCcceEEEEEeeCCCcceEE
Q psy8473         148 -----AIKYRRMYKTGDYGRIV-DDILLYEGRTDSQVKIRGNRVDLSEVEAALSKLSEVDKLSVLCYKPGEVDQVS  217 (307)
Q Consensus       148 -----~~~~~~~~~tGD~g~~~-~g~l~~~GR~~~~i~~~G~~v~~~eiE~~l~~~p~V~~~~v~~~~~~~~~~~~  217 (307)
                           .....+||+|||+|+++ +|+++++||.+|+||++|++|+|.|||+++.+||.|.+++|++.+++..++.+
T Consensus       470 t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~  545 (640)
T d1ry2a_         470 YLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV  545 (640)
T ss_dssp             HHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCC
T ss_pred             HHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEE
Confidence                 22456899999999994 99999999999999999999999999999999999999999999887665543

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.49  E-value=1.2e-16  Score=153.89  Aligned_cols=86  Identities=16%  Similarity=0.242  Sum_probs=68.4

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccCCCCCCCe
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSSAGSTDSS  292 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~~~~ds~  292 (307)
                      ++.++|. ..++||+++++||+||+||++|+||++.|||+.|.+||+|.+|+|++.++   ++...+|++++++...+..
T Consensus       491 ~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~  570 (643)
T d1pg4a_         491 MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE  570 (643)
T ss_dssp             SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             eEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHH
Confidence            4556654 45789999999999999999999999999999999999999999998765   4455569998887766655


Q ss_pred             eeeccccchh
Q psy8473         293 FIVKSREDRA  302 (307)
Q Consensus       293 f~~~~~~~~~  302 (307)
                      ...+++..+.
T Consensus       571 ~~~~i~~~~~  580 (643)
T d1pg4a_         571 LYAEVRNWVR  580 (643)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4445554443

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=2.8e-14  Score=136.88  Aligned_cols=74  Identities=22%  Similarity=0.307  Sum_probs=59.0

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccc---ccccceEEeccCCCCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKP---GEVDQIWEAPSSAGSTD  290 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~---~~~~~~~v~~~~~~~~d  290 (307)
                      ++.++|. ..++||+++|+||+||+||++|+||+|.|||+.|.+||+|.+|+|++.++   ++...+|++++++...+
T Consensus       481 w~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~  558 (640)
T d1ry2a_         481 YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS  558 (640)
T ss_dssp             SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------
T ss_pred             eEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCcc
Confidence            4566665 55789999999999999999999999999999999999999999998766   44555688887765433

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.20  E-value=2.9e-13  Score=126.50  Aligned_cols=69  Identities=14%  Similarity=0.131  Sum_probs=44.5

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccccc---ceEEeccC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGEVD---QIWEAPSS  285 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~~~---~~~v~~~~  285 (307)
                      ++.++|. ..++||+++++||+||+||++|++|+|.|||+.|.+||.|.+++|++.+++...   .+|+++..
T Consensus       406 ~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~  478 (534)
T d1v25a_         406 FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRG  478 (534)
T ss_dssp             CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----
T ss_pred             CCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCC
Confidence            4455554 457899999999999999999999999999999999999999999987765443   34555543

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=98.54  E-value=1.3e-08  Score=93.51  Aligned_cols=106  Identities=23%  Similarity=0.130  Sum_probs=74.9

Q ss_pred             CCeeechhHHHHHHhcCCCcceEEEE---------EeeCCCcceEEEEeeec-ccCcccccccccccccccccCCcccch
Q psy8473         181 RGNRVDLSEVEAALSKLSEVDKLSVL---------CYKPGEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDL  250 (307)
Q Consensus       181 ~G~~v~~~eiE~~l~~~p~V~~~~v~---------~~~~~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~  250 (307)
                      ++..+.++++++++.+.|.+...+..         .......+..++.+++. ..++||+++++||+||+|+++|++|+|
T Consensus       347 ~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p  426 (514)
T d1amua_         347 NLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVEL  426 (514)
T ss_dssp             TSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred             cceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECH
Confidence            35556666666666666666554421         11111122446666665 457899999999999999999999999


Q ss_pred             hhHHHHHccccccccccccccccccc---cceEEeccCC
Q psy8473         251 SEVEAALSKISEVDKLSVLCYKPGEV---DQIWEAPSSA  286 (307)
Q Consensus       251 ~eIe~~L~~~p~V~~~~vv~~~~~~~---~~~~v~~~~~  286 (307)
                      .+||+.|.+||.|.+++|++.+++..   ..+++++.++
T Consensus       427 ~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~  465 (514)
T d1amua_         427 EEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH  465 (514)
T ss_dssp             HHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC
T ss_pred             HHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC
Confidence            99999999999999999998766443   3346665543

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=98.46  E-value=6.3e-09  Score=96.24  Aligned_cols=108  Identities=12%  Similarity=0.024  Sum_probs=71.5

Q ss_pred             CeeechhHHHHHHhcCCCcceEEEEEeeC---CCcceEEEEeeec-ccCcccccccccccccccccCCcccchhhHHHHH
Q psy8473         182 GNRVDLSEVEAALSKLSEVDKLSVLCYKP---GEVDQVSEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAAL  257 (307)
Q Consensus       182 G~~v~~~eiE~~l~~~p~V~~~~v~~~~~---~~~~~~~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L  257 (307)
                      |..+.++++++++.+.+.+...++-....   ......++.++|. ..+++|+++++||.||+||++|++|++.|||+.|
T Consensus       376 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l  455 (541)
T d1lcia_         376 GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESIL  455 (541)
T ss_dssp             CCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHH
T ss_pred             CcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHH
Confidence            55666666666666777665544211000   0112235566665 5578999999999999999999999999999999


Q ss_pred             ccccccccccccccccc---cccceEEeccCCCCC
Q psy8473         258 SKISEVDKLSVLCYKPG---EVDQIWEAPSSAGST  289 (307)
Q Consensus       258 ~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~~~~  289 (307)
                      .+||.|.+|+|++.++.   +...+|++++++...
T Consensus       456 ~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~  490 (541)
T d1lcia_         456 LQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM  490 (541)
T ss_dssp             HTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred             HhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCC
Confidence            99999999999987653   344457777665543

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=98.46  E-value=4e-08  Score=89.33  Aligned_cols=71  Identities=18%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             EEEeeec-ccCcccccccccccccccccCCcccchhhHHHHHcccccccccccccccccc---ccceEEeccCCC
Q psy8473         217 SEVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPGE---VDQIWEAPSSAG  287 (307)
Q Consensus       217 ~~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~~---~~~~~v~~~~~~  287 (307)
                      ++.++|. ..++||+++++||+||+||++|++|++.|||+.|.+||.|.+|+|++.+++.   ...+|++++.+.
T Consensus       380 ~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~  454 (503)
T d3cw9a1         380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE  454 (503)
T ss_dssp             EEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC
T ss_pred             ceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCC
Confidence            4555554 4578999999999999999999999999999999999999999999876543   445577776544

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=5e-08  Score=89.84  Aligned_cols=69  Identities=22%  Similarity=0.269  Sum_probs=56.7

Q ss_pred             EEeeec-ccCcccccccccccccccccCCcccchhhHHHHHccccccccccccccccc---cccceEEeccCC
Q psy8473         218 EVTSEE-IRGVDDILLYEGRTDSQVKIRGNRVDLSEVEAALSKISEVDKLSVLCYKPG---EVDQIWEAPSSA  286 (307)
Q Consensus       218 ~~~~~~-~~~~dg~~~~~gR~dd~ik~~G~~i~~~eIe~~L~~~p~V~~~~vv~~~~~---~~~~~~v~~~~~  286 (307)
                      +.+++. ..++||+++++||+||++|++|++|+|.|||+.|.+||+|.+++|++.+++   +...+|+++++.
T Consensus       409 ~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~  481 (536)
T d1mdba_         409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE  481 (536)
T ss_dssp             EEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS
T ss_pred             cccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC
Confidence            444443 567899999999999999999999999999999999999999999987654   334457776554