Psyllid ID: psy8476

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
MSILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGIGIQNAQLFEMSILEFERNQ
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHcccccccccccccccccccccHHHHcccccccccccccEEEEEcccccccEEEcccccccccccccHHHHHHHHHHccEEcccccccccccccccccccccccEEEEEEEEcEEcccccHHHHHHHHHHHHcccccccccccccHHHHHccccccccccccEEEEEEcccccccEEEccccccccccccccHHHHHHHHcccEEEEcccccccccccccccccccccEEcEEEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHcccccccHHHHHHEHccccccccccccEEEEEEEEEccccccccccEcccccccEEEEcccccHHEEEccccEEEcccccccccccccccHHHccccEEEEEEEEEEEcccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEEccccccccHHHHccccHHHEEccccEEEcccccccccccccccccHccccEEEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcc
MSILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILErpgrviserkplcrresnnvdiedilahtpedpsiaFSTVfelggpggealvkspgntvcntHSRLATIAKYVAStgqilnigdvpswmreevcndedeesdfttrcilcmpifngqkTVIGVAQLINKIserkplcrresnnvdiedilahtpedpsiaFSTVfelggpggealvkspgntvcntHSRLATIAKYVAStgqilnigdvpswmreevcndedeesdfttrcilcmpifngqkTVIGVAQLINKvtrqpftdcdvSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGIGIQNAQLFEMSILEFERNQ
MSILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLlksetseashlerilerpgrviserkplcrresnnvDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKIserkplcrresnnVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGIGIQNAQLFEMSILEFERNQ
MSILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGIGIQNAQLFEMSILEFERNQ
****EFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKS********************************VDIEDILAHTP*DPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMR**************TRCILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMR**************TRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGIGIQNAQLFEMSILE*****
*SILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNT**NTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGIGIQNAQLFEMS*LE*****
MSILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGIGIQNAQLFEMSILEFERNQ
MSILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGIGIQNAQLFEMSILEFERN*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSILEFERNQVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCGIGIQNAQLFEMSILEFERNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query421 2.2.26 [Sep-21-2011]
B4K9L4 1116 cGMP-specific 3',5'-cycli N/A N/A 0.508 0.191 0.546 1e-58
B4NAL6 1127 cGMP-specific 3',5'-cycli N/A N/A 0.503 0.188 0.558 6e-58
B4LVU6 893 cGMP-specific 3',5'-cycli N/A N/A 0.505 0.238 0.541 2e-56
Q298P4 1110 cGMP-specific 3',5'-cycli yes N/A 0.501 0.190 0.544 2e-55
B4G4E5 1276 cGMP-specific 3',5'-cycli N/A N/A 0.501 0.165 0.544 2e-55
B4HEM4 1205 cGMP-specific 3',5'-cycli N/A N/A 0.494 0.172 0.540 3e-55
Q9VFI9 1118 cGMP-specific 3',5'-cycli yes N/A 0.494 0.186 0.540 3e-55
B4QZU1 1143 cGMP-specific 3',5'-cycli N/A N/A 0.484 0.178 0.530 3e-55
B4PSS5 1149 cGMP-specific 3',5'-cycli N/A N/A 0.494 0.181 0.540 3e-55
B3P3K2 1131 cGMP-specific 3',5'-cycli N/A N/A 0.494 0.183 0.540 4e-55
>sp|B4K9L4|PDE6_DROMO cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila mojavensis GN=Pde6 PE=3 SV=1 Back     alignment and function desciption
 Score =  227 bits (579), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/227 (54%), Positives = 161/227 (70%), Gaps = 13/227 (5%)

Query: 4   LEFERN--QVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVT 61
           +EF+ +  ++F+RYLTFCGIGIQNAQLFEMS+ E+ RNQILL LARSIFEEQ+NLECLVT
Sbjct: 372 MEFDEHDVEIFRRYLTFCGIGIQNAQLFEMSVQEYRRNQILLNLARSIFEEQNNLECLVT 431

Query: 62  KIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDI 121
           KIMTEAR+LLKCERC+VFL+  +  E SHLE+I+E+P ++  +R P      ++ + +  
Sbjct: 432 KIMTEARELLKCERCSVFLVDLDCCEESHLEKIIEKPHQLQQQRTPRAIMSGDSFEEKQN 491

Query: 122 LAHTPEDPSIAFSTVFELGGPGGEALVKSPG-NTVCNTHSRLATIAKYVASTGQILNIGD 180
           + +        F+ +FELGG    A V  P  N +  +HS LA IA++VA+TGQ +NI D
Sbjct: 492 MRNR-------FTVLFELGGENHAANVSRPSINDL--SHSTLAQIAQFVATTGQTVNICD 542

Query: 181 VPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKIS 227
           V  W+RE      + E D +T+ ILCMPI N QKTVIGVAQLINK S
Sbjct: 543 VQDWVREHNQIRAESEID-STQAILCMPIVNAQKTVIGVAQLINKAS 588
Has a role regulating cGMP transport in Malpighian tubule principal cells.
Drosophila mojavensis (taxid: 7230)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 3EC: 5
>sp|B4NAL6|PDE6_DROWI cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila willistoni GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|B4LVU6|PDE6_DROVI cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila virilis GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|Q298P4|PDE6_DROPS cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila pseudoobscura pseudoobscura GN=Pde6 PE=3 SV=3 Back     alignment and function description
>sp|B4G4E5|PDE6_DROPE cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila persimilis GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|B4HEM4|PDE6_DROSE cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila sechellia GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|Q9VFI9|PDE6_DROME cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila melanogaster GN=Pde6 PE=1 SV=4 Back     alignment and function description
>sp|B4QZU1|PDE6_DROSI cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila simulans GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|B4PSS5|PDE6_DROYA cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila yakuba GN=Pde6 PE=3 SV=1 Back     alignment and function description
>sp|B3P3K2|PDE6_DROER cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila erecta GN=Pde6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
345479390 1062 PREDICTED: cGMP-specific 3',5'-cyclic ph 0.494 0.195 0.655 2e-69
332024921 1077 cGMP-specific 3',5'-cyclic phosphodieste 0.498 0.194 0.622 2e-68
322789823 990 hypothetical protein SINV_00589 [Solenop 0.498 0.212 0.622 3e-68
307203843 1079 Dual 3',5'-cyclic-AMP and -GMP phosphodi 0.498 0.194 0.608 5e-67
383851755 1062 PREDICTED: cGMP-specific 3',5'-cyclic ph 0.496 0.196 0.599 7e-67
350425937 1071 PREDICTED: cGMP-specific 3',5'-cyclic ph 0.496 0.195 0.605 2e-66
328779958 1067 PREDICTED: cGMP-specific 3',5'-cyclic ph 0.498 0.196 0.589 7e-66
380024054 1065 PREDICTED: cGMP-specific 3',5'-cyclic ph 0.498 0.197 0.589 1e-65
340726052 1072 PREDICTED: cGMP-specific 3',5'-cyclic ph 0.498 0.195 0.605 1e-65
270013097 883 hypothetical protein TcasGA2_TC011654 [T 0.494 0.235 0.605 1e-64
>gi|345479390|ref|XP_003423942.1| PREDICTED: cGMP-specific 3',5'-cyclic phosphodiesterase-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/218 (65%), Positives = 166/218 (76%), Gaps = 10/218 (4%)

Query: 10  QVFQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARD 69
           +VFQRYLTFCGIGIQNAQLFE+S+LE+ RNQILL LARSIFEEQ+NLECLVTKIMTEA++
Sbjct: 346 EVFQRYLTFCGIGIQNAQLFELSVLEYRRNQILLNLARSIFEEQNNLECLVTKIMTEAKE 405

Query: 70  LLKCERCAVFLLKSETSEASHLERILERPGRVISE-RKPLCRRESNNVDIEDIL-AHTPE 127
           LLKCERCAV+LL  +  EA HLE+I+ERPG+ I E RKPL RRESNN+D+EDIL  H  E
Sbjct: 406 LLKCERCAVYLLDLDCGEAGHLEKIVERPGKSIQESRKPLSRRESNNIDMEDILQQHAGE 465

Query: 128 DPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMRE 187
           D    F+ VFE+     EA +  P  T  N  S L  IA+YVA+TGQILNIGDV SW + 
Sbjct: 466 DSK--FTMVFEMENGTQEAKIYRP--TSGNLTSPLGQIARYVAATGQILNIGDVASWSKR 521

Query: 188 EVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINK 225
           +V     E     TR ILCMPI NGQ++VIGVAQLINK
Sbjct: 522 QVFQVGTE----PTRSILCMPIVNGQRSVIGVAQLINK 555

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332024921|gb|EGI65109.1| cGMP-specific 3',5'-cyclic phosphodiesterase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322789823|gb|EFZ14970.1| hypothetical protein SINV_00589 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307203843|gb|EFN82779.1| Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383851755|ref|XP_003701397.1| PREDICTED: cGMP-specific 3',5'-cyclic phosphodiesterase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350425937|ref|XP_003494279.1| PREDICTED: cGMP-specific 3',5'-cyclic phosphodiesterase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328779958|ref|XP_394107.3| PREDICTED: cGMP-specific 3',5'-cyclic phosphodiesterase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380024054|ref|XP_003695822.1| PREDICTED: cGMP-specific 3',5'-cyclic phosphodiesterase-like [Apis florea] Back     alignment and taxonomy information
>gi|340726052|ref|XP_003401377.1| PREDICTED: cGMP-specific 3',5'-cyclic phosphodiesterase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|270013097|gb|EFA09545.1| hypothetical protein TcasGA2_TC011654 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
UNIPROTKB|B3LVW5 1158 Pde6 "cGMP-specific 3',5'-cycl 0.332 0.120 0.604 2.8e-68
UNIPROTKB|B4K9L4 1116 Pde6 "cGMP-specific 3',5'-cycl 0.505 0.190 0.548 1.1e-58
UNIPROTKB|B4LVU6 893 Pde6 "cGMP-specific 3',5'-cycl 0.505 0.238 0.541 1.1e-57
UNIPROTKB|B4NAL6 1127 Pde6 "cGMP-specific 3',5'-cycl 0.503 0.188 0.558 1.4e-57
UNIPROTKB|B4JXX2 1078 Pde6 "cGMP-specific 3',5'-cycl 0.496 0.193 0.548 6e-56
FB|FBgn0038237 1118 Pde6 "Phosphodiesterase 6" [Dr 0.494 0.186 0.540 5.5e-55
UNIPROTKB|B3P3K2 1131 Pde6 "cGMP-specific 3',5'-cycl 0.494 0.183 0.540 5.9e-55
UNIPROTKB|B4HEM4 1205 Pde6 "cGMP-specific 3',5'-cycl 0.494 0.172 0.540 8.2e-55
UNIPROTKB|B4QZU1 1143 Pde6 "cGMP-specific 3',5'-cycl 0.494 0.181 0.535 1.7e-54
UNIPROTKB|Q298P4 1110 Pde6 "cGMP-specific 3',5'-cycl 0.498 0.189 0.555 3.3e-52
UNIPROTKB|B3LVW5 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila ananassae (taxid:7217)] Back     alignment and assigned GO terms
 Score = 403 (146.9 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
 Identities = 87/144 (60%), Positives = 103/144 (71%)

Query:   257 FSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCND 316
             F+ +FELGG    A V  P  +  +T S LA IA++VA+TGQ +NI DV  W+RE   N 
Sbjct:   525 FTVLFELGGEYQAANVSRPSTSELST-STLAQIAQFVATTGQTVNICDVHEWVREH--NQ 581

Query:   317 EDEESDF-TTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIH 375
                ES+  +T+ ILCMPI N +KTVIGVAQLINK    PFT+ D SIFEAFAIFCGLGIH
Sbjct:   582 IRAESEIDSTQAILCMPIVNAKKTVIGVAQLINKANGVPFTESDASIFEAFAIFCGLGIH 641

Query:   376 NTQMYENACKLMAKQKVFQRYLTF 399
             NTQMYENACKLMAKQKV    L++
Sbjct:   642 NTQMYENACKLMAKQKVALECLSY 665
GO:0016020 "membrane" evidence=ISS
GO:0046068 "cGMP metabolic process" evidence=ISS
GO:0047555 "3',5'-cyclic-GMP phosphodiesterase activity" evidence=ISS
UNIPROTKB|B4K9L4 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
UNIPROTKB|B4LVU6 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
UNIPROTKB|B4NAL6 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila willistoni (taxid:7260)] Back     alignment and assigned GO terms
UNIPROTKB|B4JXX2 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila grimshawi (taxid:7222)] Back     alignment and assigned GO terms
FB|FBgn0038237 Pde6 "Phosphodiesterase 6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|B3P3K2 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila erecta (taxid:7220)] Back     alignment and assigned GO terms
UNIPROTKB|B4HEM4 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila sechellia (taxid:7238)] Back     alignment and assigned GO terms
UNIPROTKB|B4QZU1 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila simulans (taxid:7240)] Back     alignment and assigned GO terms
UNIPROTKB|Q298P4 Pde6 "cGMP-specific 3',5'-cyclic phosphodiesterase" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q298P4PDE6_DROPS3, ., 1, ., 4, ., 3, 50.54460.50110.1900yesN/A
Q9VFI9PDE6_DROME3, ., 1, ., 4, ., 3, 50.54010.49400.1860yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
smart00065149 smart00065, GAF, Domain present in phytochromes an 3e-13
smart00065149 smart00065, GAF, Domain present in phytochromes an 2e-07
pfam01590143 pfam01590, GAF, GAF domain 2e-06
pfam01590143 pfam01590, GAF, GAF domain 4e-04
COG2203175 COG2203, FhlA, FOG: GAF domain [Signal transductio 8e-04
>gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information 
 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 289 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 348
           +A  VA TG+ LNI DV     + +  ++        R  L +P+    + ++GV  L N
Sbjct: 58  LAGRVAETGRPLNIPDVE---ADPLFAEDLLGRYQGVRSFLAVPLVADGE-LVGVLALHN 113

Query: 349 KVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYE 381
           K + +PFT+ D  + +A A    + + N Q+YE
Sbjct: 114 KKSPRPFTEEDEELLQALANQLAIALANAQLYE 146

Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa. Length = 149
>gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|225113 COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 421
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 99.95
KOG3689|consensus 707 99.84
TIGR01817 534 nifA Nif-specific regulatory protein. This model r 99.73
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 99.7
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 99.69
PRK05022 509 anaerobic nitric oxide reductase transcription reg 99.44
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 99.38
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 99.31
smart00065149 GAF Domain present in phytochromes and cGMP-specif 99.27
COG3605 756 PtsP Signal transduction protein containing GAF an 99.26
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 99.16
COG3605 756 PtsP Signal transduction protein containing GAF an 99.09
KOG3689|consensus 707 99.03
COG1956163 GAF domain-containing protein [Signal transduction 98.97
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 98.91
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 98.71
COG3604 550 FhlA Transcriptional regulator containing GAF, AAA 98.67
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 98.67
COG1956163 GAF domain-containing protein [Signal transduction 98.63
TIGR02916 679 PEP_his_kin putative PEP-CTERM system histidine ki 98.57
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 98.56
smart00065149 GAF Domain present in phytochromes and cGMP-specif 98.42
PRK13558 665 bacterio-opsin activator; Provisional 98.26
PRK10490 895 sensor protein KdpD; Provisional 98.03
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 97.78
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 97.3
PRK13558665 bacterio-opsin activator; Provisional 97.07
PRK13837 828 two-component VirA-like sensor kinase; Provisional 96.91
TIGR02851180 spore_V_T stage V sporulation protein T. Members o 96.78
PRK05022 509 anaerobic nitric oxide reductase transcription reg 96.77
PF11849174 DUF3369: Domain of unknown function (DUF3369); Int 96.29
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 96.0
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 95.97
PRK04158256 transcriptional repressor CodY; Validated 95.05
PRK11388 638 DNA-binding transcriptional regulator DhaR; Provis 94.75
TIGR01817 534 nifA Nif-specific regulatory protein. This model r 94.1
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 93.58
COG3604 550 FhlA Transcriptional regulator containing GAF, AAA 93.37
PF06018177 CodY: CodY GAF-like domain; InterPro: IPR010312 Th 92.24
COG3850574 NarQ Signal transduction histidine kinase, nitrate 91.78
COG3284 606 AcoR Transcriptional activator of acetoin/glycerol 91.15
COG3275 557 LytS Putative regulator of cell autolysis [Signal 90.07
TIGR02787251 codY_Gpos GTP-sensing transcriptional pleiotropic 89.13
TIGR02851180 spore_V_T stage V sporulation protein T. Members o 88.48
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 87.61
PF11152195 DUF2930: Protein of unknown function (DUF2930); In 87.38
PRK11388 638 DNA-binding transcriptional regulator DhaR; Provis 86.82
COG4465261 CodY Pleiotropic transcriptional repressor [Transc 84.83
PF05651135 Diacid_rec: Putative sugar diacid recognition; Int 84.64
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 84.12
PF0274381 Cache_1: Cache domain; InterPro: IPR004010 Cache i 81.12
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information 
Probab=99.95  E-value=6.9e-26  Score=244.52  Aligned_cols=294  Identities=12%  Similarity=0.067  Sum_probs=210.7

Q ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCCcc
Q psy8476          38 RNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVD  117 (421)
Q Consensus        38 ~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  117 (421)
                      ..++|++|++.+ .+..|+++++..+...+.+++.||+++|.|+|+.++.+.+                        |.|
T Consensus         7 ~~~~l~~is~~~-~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~------------------------~~~   61 (686)
T PRK15429          7 GQQGLFDITRTL-LQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY------------------------YAS   61 (686)
T ss_pred             HHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee------------------------eec
Confidence            357899999988 7788999999999999999999999999999998876521                        111


Q ss_pred             hhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCcccccCC
Q psy8476         118 IEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDEES  197 (421)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~~~  197 (421)
                      -.+.  +++                     -..|      ....++|++|||+++++|+.+++..-...+  +.-.+...
T Consensus        62 ~~~~--~~~---------------------~~~~------~~~~~~g~~g~vl~~~~~l~~~~~~~~~~~--~~l~~~~~  110 (686)
T PRK15429         62 REKG--TPV---------------------KYED------ETVLAHGPVRRILSRPDTLHCSYEEFCETW--PQLAAGGL  110 (686)
T ss_pred             cccc--cch---------------------hccc------hhhhccCcceEEeecCceEEEchHHhhhcc--HHHhhccc
Confidence            1110  000                     0011      112579999999999999998885432221  11111112


Q ss_pred             CceeeeeEEeeeEeCCCcEEEEEEeeecccCCcch-------------------hh------------------------
Q psy8476         198 DFTTRCILCMPIFNGQKTVIGVAQLINKISERKPL-------------------CR------------------------  234 (421)
Q Consensus       198 ~~~~~s~l~vPl~~~~~~vIGVl~l~~~~~~~~~~-------------------~~------------------------  234 (421)
                      ....++|++|||+.. |+|+|++++.++.++.|+-                   .+                        
T Consensus       111 ~~~~~~~lgvPl~~~-~~v~G~l~l~~~~~~~Ft~~d~~ll~~la~~a~~aie~~~~~e~~~~~~~~L~~~r~~~~~L~e  189 (686)
T PRK15429        111 YPKFGHYCLMPLAAE-GHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVA  189 (686)
T ss_pred             ccCccceEEeceeeC-CeeEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            244678999999996 5999999999998766620                   00                        


Q ss_pred             ---hccccccHHHHHh----cCCCCCCcceeEEEEEcCCCCeeeeecCCC---Cc----ccccCCCchHHHHHHHhCCEE
Q psy8476         235 ---RESNNVDIEDILA----HTPEDPSIAFSTVFELGGPGGEALVKSPGN---TV----CNTHSRLATIAKYVASTGQIL  300 (421)
Q Consensus       235 ---~~~~~~dl~~IL~----~~~~~l~a~~~~i~l~d~~~~~~~~~~~~~---~~----~~~~~~~~gi~g~v~~tg~~v  300 (421)
                         ...+..++++++.    .+.+.++++.++|+++|.++..+.+....+   ..    ....+...|++|+|+++|+|+
T Consensus       190 Is~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~~~~~~~~~l~g~V~~~~~p~  269 (686)
T PRK15429        190 ITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEML  269 (686)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhcccccccCCcccchHHHHHhcCceE
Confidence               0124566666554    456788999999999999988765533221   11    112344569999999999999


Q ss_pred             EEcCCCCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476         301 NIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMY  380 (421)
Q Consensus       301 ~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~  380 (421)
                      .++|...++...+........+...+|+++|||.. .|+++|||.+.++.. ..|+++|+++|+.||+|+|+||+|+++|
T Consensus       270 lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~-~~~v~GvL~l~~~~~-~~F~~~dl~lL~~iA~~~A~Aie~a~~~  347 (686)
T PRK15429        270 LINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMS-GDTMLGVLKLAQCEE-KVFTTTNLKLLRQIAERVAIAVDNALAY  347 (686)
T ss_pred             EEECccCcccchhhhhhhhcccccceEEEEEeEEE-CCEEEEEEEEeeCCC-CcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99887765432221111112223468999999999 469999999998765 6899999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy8476         381 ENACKLMAKQ  390 (421)
Q Consensus       381 ~e~~~~~~~~  390 (421)
                      +++++..++.
T Consensus       348 ~~~~~~~~~L  357 (686)
T PRK15429        348 QEIHRLKERL  357 (686)
T ss_pred             HHHHHHhhhh
Confidence            9987755543

>KOG3689|consensus Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG3689|consensus Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>TIGR02851 spore_V_T stage V sporulation protein T Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>PRK04158 transcriptional repressor CodY; Validated Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY Back     alignment and domain information
>TIGR02851 spore_V_T stage V sporulation protein T Back     alignment and domain information
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription] Back     alignment and domain information
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
3mf0_A432 Crystal Structure Of Pde5a Gaf Domain (89-518) Leng 4e-20
3mf0_A432 Crystal Structure Of Pde5a Gaf Domain (89-518) Leng 2e-16
3lfv_A431 Crystal Structure Of Unliganded Pde5a Gaf Domain Le 5e-20
3lfv_A431 Crystal Structure Of Unliganded Pde5a Gaf Domain Le 2e-16
3bjc_A 878 Crystal Structure Of The Pde5a Catalytic Domain In 7e-20
3bjc_A 878 Crystal Structure Of The Pde5a Catalytic Domain In 2e-17
2xss_A181 Crystal Structure Of Gafb From The Human Phosphodie 2e-14
3ibj_A 691 X-Ray Structure Of Pde2a Length = 691 1e-13
1mc0_A368 Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide 2e-13
2zmf_A189 Crystal Structure Of The C-Terminal Gaf Domain Of H 1e-11
2k31_A176 Solution Structure Of Cgmp-Binding Gaf Domain Of Ph 2e-10
1ykd_A398 Crystal Structure Of The Tandem Gaf Domains From A 2e-07
>pdb|3MF0|A Chain A, Crystal Structure Of Pde5a Gaf Domain (89-518) Length = 432 Back     alignment and structure 
Iteration: 1

 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 107/238 (44%), Gaps = 65/238 (27%)
Query: 12  FQRYLTFCGIGIQNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLL 71
           F  YL FCGI + NAQL+E S+LE +RNQ+LL LA  IFEEQ +LE ++ KI       +
Sbjct: 215 FAAYLAFCGIVLHNAQLYETSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFM 274
Query: 72  KCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSI 131
           + ++C +F++                                             ED S 
Sbjct: 275 QVQKCTIFIVD--------------------------------------------EDCSD 290
Query: 132 AFSTVFELGGPGGEALVKSPGNTVCNTHSRLA---TIAKYVASTGQILNIGDVPS----- 183
           +FS+VF +     E L KS  +T+   H         A+YV +T + LNI DV       
Sbjct: 291 SFSSVFHM---ECEELEKS-SDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSKDKRFP 346
Query: 184 WMREEVCNDEDEESDFTTRCILCMPIFNGQKT-VIGVAQLINKISER----KPLCRRE 236
           W  E   N   +      R +LC PI NG+K  VIGV QL+NK+ E     KP  R +
Sbjct: 347 WTTENTGNVNQQ----CIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRND 400
>pdb|3MF0|A Chain A, Crystal Structure Of Pde5a Gaf Domain (89-518) Length = 432 Back     alignment and structure
>pdb|3LFV|A Chain A, Crystal Structure Of Unliganded Pde5a Gaf Domain Length = 431 Back     alignment and structure
>pdb|3LFV|A Chain A, Crystal Structure Of Unliganded Pde5a Gaf Domain Length = 431 Back     alignment and structure
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex With A Novel Inhibitor Length = 878 Back     alignment and structure
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex With A Novel Inhibitor Length = 878 Back     alignment and structure
>pdb|2XSS|A Chain A, Crystal Structure Of Gafb From The Human Phosphodiesterase 5 Length = 181 Back     alignment and structure
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a Length = 691 Back     alignment and structure
>pdb|1MC0|A Chain A, Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide Phosphodiesterase 2a, Containing The Gaf A And Gaf B Domains Length = 368 Back     alignment and structure
>pdb|2ZMF|A Chain A, Crystal Structure Of The C-Terminal Gaf Domain Of Human Phosphodiesterase 10a Length = 189 Back     alignment and structure
>pdb|2K31|A Chain A, Solution Structure Of Cgmp-Binding Gaf Domain Of Phosphodiesterase 5 Length = 176 Back     alignment and structure
>pdb|1YKD|A Chain A, Crystal Structure Of The Tandem Gaf Domains From A Cyanobacterial Adenylyl Cyclase: Novel Modes Of Ligand-Binding And Dimerization Length = 398 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 2e-44
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 5e-34
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 3e-36
1mc0_A 368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 6e-20
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 1e-08
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 6e-34
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 1e-32
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 3e-32
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 6e-04
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 1e-26
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 9e-25
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 7e-26
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 4e-23
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 2e-21
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 2e-13
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 1e-18
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 2e-07
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 3e-04
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 2e-14
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 7e-06
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 7e-13
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 3e-04
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 1e-10
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 2e-04
3eea_A162 GAF domain/HD domain protein; structural genomics, 2e-10
3eea_A162 GAF domain/HD domain protein; structural genomics, 3e-04
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 4e-10
2qyb_A181 Membrane protein, putative; GAF domain, domain of 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 6e-07
3p01_A184 Two-component response regulator; PSI-2, midwest c 7e-06
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 2e-05
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Length = 878 Back     alignment and structure
 Score =  164 bits (415), Expect = 2e-44
 Identities = 102/445 (22%), Positives = 148/445 (33%), Gaps = 117/445 (26%)

Query: 24  QNAQLFEMSILEFERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKS 83
                      E ++   LL+L + I     ++  L  KI      L+  +R ++FL+  
Sbjct: 137 MPLTPPRFDHDEGDQCSRLLELVKDISSH-LDVTALCHKIFLHIHGLISADRYSLFLVCE 195

Query: 84  ETSEASHLERILERPGRVISERKPLCRRESNNVDIEDILAHTPEDPSIAFSTVFELGGPG 143
           ++S    L   L                        D+   +  +         E     
Sbjct: 196 DSSNDKFLISRLF-----------------------DVAEGSTLEEVSNNCIRLEWN--- 229

Query: 144 GEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDE-DEESDFTTR 202
                                I  +VA+ G+ LNI D      +   N E D+ + + T+
Sbjct: 230 -------------------KGIVGHVAALGEPLNIKDA---YEDPRFNAEVDQITGYKTQ 267

Query: 203 CILCMPIFNGQKTVIGVAQLINKISERKP------------------------------- 231
            ILCMPI N ++ V+GVAQ INK S                                   
Sbjct: 268 SILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSL 327

Query: 232 -LCRRE-----------SNNVDIEDILAHTPEDPSIAF----STVFEL------------ 263
              +R                 +E IL                T+F +            
Sbjct: 328 LENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVF 387

Query: 264 -GGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMR-EEVCNDEDEES 321
                             + +      A+YV +T + LNI DV    R      +    +
Sbjct: 388 HMECEELEKSSDTLTREHDANKINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVN 447

Query: 322 DFTTRCILCMPIFNGQK-TVIGVAQLINKV-----TRQPFTDCDVSIFEAFAIFCGLGIH 375
               R +LC PI NG+K  VIGV QL+NK+       +PF   D    EAF IFCGLGI 
Sbjct: 448 QQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQ 507

Query: 376 NTQMYENACKLMAKQKVFQRYLTFC 400
           NTQMYE   + MAKQ V    L++ 
Sbjct: 508 NTQMYEAVERAMAKQMVTLEVLSYH 532
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Length = 878 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Length = 368 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Length = 368 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Length = 368 Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Length = 691 Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Length = 691 Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Length = 398 Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Length = 398 Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Length = 180 Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Length = 180 Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Length = 169 Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Length = 169 Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Length = 153 Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Length = 153 Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Length = 153 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Length = 171 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Length = 171 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Length = 171 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Length = 171 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Length = 162 Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Length = 162 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Length = 181 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Length = 181 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Length = 149 Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Length = 184 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Length = 177 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 100.0
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 100.0
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 100.0
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 99.97
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 99.89
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 99.88
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 99.87
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 99.82
3cit_A160 Sensor histidine kinase; MEGA: 3.30.450.40, struct 99.82
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 99.81
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 99.79
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 99.78
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 99.76
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.76
3p01_A184 Two-component response regulator; PSI-2, midwest c 99.75
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.75
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 99.74
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 99.74
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 99.73
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 99.73
1vhm_A195 Protein YEBR; structural genomics, unknown functio 99.72
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 99.7
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 99.69
2qyb_A181 Membrane protein, putative; GAF domain, domain of 99.65
3hcy_A151 Putative two-component sensor histidine kinase PR; 99.63
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 99.63
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 99.59
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 99.58
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 99.58
2k2n_A172 Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do 99.56
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 99.55
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 99.44
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 99.4
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 99.35
3eea_A162 GAF domain/HD domain protein; structural genomics, 99.16
3hcy_A151 Putative two-component sensor histidine kinase PR; 99.15
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 99.14
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 98.97
3nhq_A 505 Bacteriophytochrome; photoreceptor, PAS, signaling 98.91
3zq5_A 520 Phytochrome-like protein CPH1; arginine finger, ta 98.84
2ool_A337 Sensor protein; bacteriophytochrome, photoconversi 98.61
4e04_A327 Bacteriophytochrome (light-regulated signal trans 98.56
4eho_A 635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 98.56
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 98.41
3s7o_A343 Bacteriophytochrome; biliverdin, PAS, GAF, photore 98.41
4eu0_A 298 PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A 98.29
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 98.15
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 98.14
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 98.06
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 97.84
3p01_A184 Two-component response regulator; PSI-2, midwest c 97.8
2qyb_A181 Membrane protein, putative; GAF domain, domain of 97.55
2w1r_A123 Spovt, stage V sporulation protein T; regulatory G 97.41
2k2n_A172 Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do 97.39
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 97.26
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 97.18
4eu0_A298 PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A 96.87
3cit_A160 Sensor histidine kinase; MEGA: 3.30.450.40, struct 96.78
3nhq_A505 Bacteriophytochrome; photoreceptor, PAS, signaling 96.51
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 96.45
1vhm_A195 Protein YEBR; structural genomics, unknown functio 96.28
3zq5_A520 Phytochrome-like protein CPH1; arginine finger, ta 96.2
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 95.52
3eea_A162 GAF domain/HD domain protein; structural genomics, 95.48
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 95.29
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 94.53
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 93.2
4eho_A635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 93.17
2w1r_A123 Spovt, stage V sporulation protein T; regulatory G 92.22
3e98_A252 GAF domain of unknown function; structural genomic 91.44
2gx5_A170 GTP-sensing transcriptional pleiotropic repressor; 89.8
2w1t_A178 Spovt, stage V sporulation protein T; transcriptio 87.86
3by8_A142 Sensor protein DCUS; histidine kinase sensor domai 83.94
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.2e-35  Score=314.35  Aligned_cols=309  Identities=22%  Similarity=0.283  Sum_probs=237.8

Q ss_pred             HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhCCCeEEEEEEeCCCchhhhHHHHHhCCCcccccCCcccccCCCC
Q psy8476          36 FERNQILLKLARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFLLKSETSEASHLERILERPGRVISERKPLCRRESNN  115 (421)
Q Consensus        36 ~~~~~~L~~i~~~l~~~~~dl~~ll~~i~~~~~~l~~a~~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (421)
                      .++++.|+++++.| + .+|++++++.+++.++++++|++|+|+|+|++++.++..    ...|                
T Consensus        11 ~e~~~~L~~i~~~l-s-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~----~~~g----------------   68 (691)
T 3ibj_A           11 TDRDRKILQLCGEL-Y-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCK----VIGD----------------   68 (691)
T ss_dssp             TTHHHHHHHHHHHC-C-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEE----EETT----------------
T ss_pred             HHHHHHHHHHHHHH-H-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEE----ecCC----------------
Confidence            45678999999999 5 779999999999999999999999999999988765310    0000                


Q ss_pred             cchhhhccCCCCCCCccceeeeecCCCCCCccccCCCCcccCCCCCCCcchhhhhhcCCEEeecCCCCccccccCccccc
Q psy8476         116 VDIEDILAHTPEDPSIAFSTVFELGGPGGEALVKSPGNTVCNTHSRLATIAKYVASTGQILNIGDVPSWMREEVCNDEDE  195 (421)
Q Consensus       116 ~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~gi~g~v~~~g~~~~i~d~~~~p~~~~~~~~d~  195 (421)
                                                ...+..+++|         .+ |++|+|+++|+|++++|+..+|++.    .+.
T Consensus        69 --------------------------~~~~~~~~~p---------~~-Gi~g~v~~~~~pv~i~d~~~~~~~~----~~~  108 (691)
T 3ibj_A           69 --------------------------KVLGEEVSFP---------LT-GCLGQVVEDKKSIQLKDLTSEDVQQ----LQS  108 (691)
T ss_dssp             --------------------------EEEEEEEEEE---------CC-SSSHHHHHHCCCEEGGGSCHHHHHH----HHH
T ss_pred             --------------------------CccccceecC---------Cc-cHHHHHHHHCCeEEeccchhccccc----ccc
Confidence                                      0000123344         67 9999999999999999999988643    233


Q ss_pred             CCCceeeeeEEeeeEeC-CCcEEEEEEeeecccC-Ccch---------h-----------------h-------------
Q psy8476         196 ESDFTTRCILCMPIFNG-QKTVIGVAQLINKISE-RKPL---------C-----------------R-------------  234 (421)
Q Consensus       196 ~~~~~~~s~l~vPl~~~-~~~vIGVl~l~~~~~~-~~~~---------~-----------------~-------------  234 (421)
                      ..++.++|+|||||+.+ +|+++||+.+.++..+ .|.-         +                 +             
T Consensus       109 ~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~~lL~~la~~~a~al~~a~l~~~~~~~~~~l~~L~ei~~  188 (691)
T 3ibj_A          109 MLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAK  188 (691)
T ss_dssp             HHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999985 4799999999998876 3410         0                 0             


Q ss_pred             hccc-cccHHHHH----hcCCCCCCcceeEEEEEcCCCCeeeeecCCCC----cccccCCCchHHHHHHHhCCEEEEcCC
Q psy8476         235 RESN-NVDIEDIL----AHTPEDPSIAFSTVFELGGPGGEALVKSPGNT----VCNTHSRLATIAKYVASTGQILNIGDV  305 (421)
Q Consensus       235 ~~~~-~~dl~~IL----~~~~~~l~a~~~~i~l~d~~~~~~~~~~~~~~----~~~~~~~~~gi~g~v~~tg~~v~i~D~  305 (421)
                      .... ..++++++    ..+.+.++++.++|+++|++........+...    .....+.+.|++|+|+++|+|++++|+
T Consensus       189 ~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~~~l~~~~~~g~~~~~~~~~~~~~~~~gi~g~v~~~g~~v~i~d~  268 (691)
T 3ibj_A          189 NLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDA  268 (691)
T ss_dssp             HHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECSSEEEEECCSSSCCSSCCCEEEEETTSHHHHHHHHHCSCEEESCS
T ss_pred             HHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeCCeEEEEeecCCcccccccceeccCCCCHHHHHHHhCCEEEecCc
Confidence            0122 34555544    44556678999999999993222222332211    112456789999999999999999999


Q ss_pred             CCccccccCCcccccCCCccceEEEEEeeeCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8476         306 PSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLINKVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYENACK  385 (421)
Q Consensus       306 ~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~lA~q~aiAlena~L~~e~~~  385 (421)
                      +.+|+  |....+...|+.++|+||+||..++|+++|||.+.++.++++|+++|+++|+.+|.|+|+||+|+++|+++++
T Consensus       269 ~~d~~--~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~~ll~~lA~~~aiAIena~l~~~l~~  346 (691)
T 3ibj_A          269 YAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNE  346 (691)
T ss_dssp             TTSTT--C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcc--ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876  4455566677888999999999964799999999999987789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccchhHH
Q psy8476         386 LMAKQKVFQRYLTFCGIGIQNAQ  408 (421)
Q Consensus       386 ~~~~~~~~~e~~~~~~~~~~~~~  408 (421)
                      ..++.+++.|+++++.++...|.
T Consensus       347 ~~~~~~~~~e~l~~~~~~~~~e~  369 (691)
T 3ibj_A          347 AQYRSHLANEMMMYHMKVSDDEY  369 (691)
T ss_dssp             HHHHHHHHHHHTTTCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHH
Confidence            99999999999999998776654
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Back     alignment and structure
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* Back     alignment and structure
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Back     alignment and structure
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 Back     alignment and structure
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} Back     alignment and structure
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* Back     alignment and structure
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A* Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis} Back     alignment and structure
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A* Back     alignment and structure
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis} Back     alignment and structure
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa} Back     alignment and structure
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A* Back     alignment and structure
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A Back     alignment and structure
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 421
d1mc0a2154 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phos 4e-08
d1mc0a2154 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phos 0.003
d1f5ma_176 d.110.2.1 (A:) Hypothetical protein ykl069wp {Bake 9e-08
d1f5ma_176 d.110.2.1 (A:) Hypothetical protein ykl069wp {Bake 8e-04
d1mc0a1187 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phos 3e-06
d1mc0a1187 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phos 7e-05
d1mc0a1187 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phos 2e-04
d1vhma_159 d.110.2.1 (A:) Hypothetical protein YebR {Escheric 3e-06
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 289 IAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFNGQKTVIGVAQLIN 348
           IA +VA+TGQILNI D  +          D+ + F TR ILC PI N  + VIGVA+L+N
Sbjct: 57  IAGHVATTGQILNIPDAYAHPLF--YRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVN 114

Query: 349 KVTRQPFTDCDVSIFEAFAIFCGLGIHNTQMYE 381
           K+    F+  D  +  AF+I+CG+ I ++ +Y+
Sbjct: 115 KINGPWFSKFDEDLATAFSIYCGISIAHSLLYK 147
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 187 Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 187 Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 187 Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Length = 159 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.88
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.72
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 99.7
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 99.6
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 99.4
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 99.31
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 99.06
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.01
d2o9ca1187 Bacteriophytochrome BphP {Deinococcus radiodurans 98.48
d2oola1194 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 98.44
d3c2wa1192 Bacteriophytochrome BphP {Pseudomonas aeruginosa [ 98.33
d2veaa1196 Phytochrome-like protein Cph1 {Synechocystis sp. p 98.07
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 96.47
d3by8a1133 Fumarate sensor DcuS {Escherichia coli [TaxId: 562 88.01
d1p0za_131 Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 85.14
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 84.48
d1tf1a_184 Transcriptional regulator AllR, C-terminal domain 80.76
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.3e-22  Score=179.15  Aligned_cols=111  Identities=17%  Similarity=0.223  Sum_probs=86.3

Q ss_pred             chHHHHHHHhCCEEEEcCCCCccccccCCcccccCCCccceEEEEEeee-CCCcEEEEEEEEecCCCCCCCHHHHHHHHH
Q psy8476         287 ATIAKYVASTGQILNIGDVPSWMREEVCNDEDEESDFTTRCILCMPIFN-GQKTVIGVAQLINKVTRQPFTDCDVSIFEA  365 (421)
Q Consensus       287 ~gi~g~v~~tg~~v~i~D~~~~~~~~f~~~~d~~~~~~~~S~L~vPI~~-~~g~vIGVl~v~~~~~~~~Fs~~d~~lL~~  365 (421)
                      .|+.|+|+++|+|++++|++.||.+..    +...++.++|++|+||+. .+++++||+.+.++..+..|+++|+++++.
T Consensus        72 ~g~~~~v~~~~~~~~i~d~~~d~~~~~----~~~~~~~~~s~l~vPl~~~~~~~~iGvl~~~~~~~~~~fs~~d~~~l~~  147 (187)
T d1mc0a1          72 MGRLGQVVEDKQCIQLKDLTSDDVQQL----QNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDEHVIQH  147 (187)
T ss_dssp             SSSHHHHHHHCCCEEGGGSCHHHHHHH----HHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHHHHHHH
T ss_pred             ccHHHHHHHhhhhhhhhcccccccccc----chhhhhhHHHHHhhhhhccccccceEEEEEEcccccchhhhHHHHHHHH
Confidence            455566666666666666555543221    222334568999999995 257999999999998888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8476         366 FAIFCGLGIHNTQMYENACKLMAKQKVFQRYLTFCG  401 (421)
Q Consensus       366 lA~q~aiAlena~L~~e~~~~~~~~~~~~e~~~~~~  401 (421)
                      +|.++|+||+|+++|++.++..++.+.++|..+.+.
T Consensus       148 ~a~~~a~ai~na~l~~~~~~~~~~~~~lle~~~~l~  183 (187)
T d1mc0a1         148 CFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLF  183 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888755443
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d1tf1a_ d.110.2.2 (A:) Transcriptional regulator AllR, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure