Psyllid ID: psy8483

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
MQSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK
ccccccHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccccEEEEEcccccccccEEEEEcccHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHccEEEEcHHHHHHccccccccccccccccccccccccHHHHHHHHHHEEEEEEcc
ccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccccccEEEEcccccccccEEEEEccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcc
mqskvsrdtLYECVNGVLNNAKVNKKRFLQTVELQIglknydpqkdkrfsgtvklkhiprpkmqvcilgdqqhcdeakaanvpfmDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPrllgpglnkagkfpgllshqeSMTQKIDEVKGTIKFQMKK
mqskvsrdtlyECVNGvlnnakvnkkRFLQTVELqiglknydpqkdkrfsgtvklkhiprPKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK
MQSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDVEalkklnknkklvkklakkYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK
********TLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKF***************************
*QSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMK*
********TLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK
****VSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMK*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query161 2.2.26 [Sep-21-2011]
Q963B6217 60S ribosomal protein L10 N/A N/A 1.0 0.741 0.875 3e-67
Q9VTP4217 60S ribosomal protein L10 yes N/A 1.0 0.741 0.850 3e-64
P62907217 60S ribosomal protein L10 yes N/A 1.0 0.741 0.770 4e-59
P62906217 60S ribosomal protein L10 yes N/A 1.0 0.741 0.770 4e-59
Q5E9E6217 60S ribosomal protein L10 yes N/A 1.0 0.741 0.770 4e-59
Q7ZYS8217 60S ribosomal protein L10 N/A N/A 1.0 0.741 0.770 6e-59
P53026217 60S ribosomal protein L10 yes N/A 1.0 0.741 0.763 2e-58
Q90YV8216 60S ribosomal protein L10 N/A N/A 0.987 0.736 0.761 5e-58
Q4R5P3217 60S ribosomal protein L10 N/A N/A 1.0 0.741 0.757 5e-58
Q6PC69216 60S ribosomal protein L10 yes N/A 0.987 0.736 0.773 1e-57
>sp|Q963B6|RL10A_SPOFR 60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1 Back     alignment and function desciption
 Score =  253 bits (647), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/161 (87%), Positives = 149/161 (92%)

Query: 1   MQSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPR 60
           M SKVSRDTLYECVN VL  +K  K+ FL+TVELQIGLKNYDPQKDKRFSGTVKLK+IPR
Sbjct: 1   MSSKVSRDTLYECVNAVLQASKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 60

Query: 61  PKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQI 120
           PKMQVC+LGDQQHCDEAK+  VP MD EALKKLNKNKKLVKKLAKKYDAFLAS++LIKQI
Sbjct: 61  PKMQVCVLGDQQHCDEAKSLTVPCMDAEALKKLNKNKKLVKKLAKKYDAFLASESLIKQI 120

Query: 121 PRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
           PRLLGPGLNKAGKFPGLLSHQESMTQKIDEVK TIKFQMKK
Sbjct: 121 PRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKK 161

Spodoptera frugiperda (taxid: 7108)
>sp|Q9VTP4|R10AB_DROME 60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=2 SV=2 Back     alignment and function description
>sp|P62907|RL10A_RAT 60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2 Back     alignment and function description
>sp|P62906|RL10A_HUMAN 60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2 Back     alignment and function description
>sp|Q5E9E6|RL10A_BOVIN 60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3 Back     alignment and function description
>sp|Q7ZYS8|RL10A_XENLA 60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1 Back     alignment and function description
>sp|P53026|RL10A_MOUSE 60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3 Back     alignment and function description
>sp|Q90YV8|RL10A_ICTPU 60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1 Back     alignment and function description
>sp|Q4R5P3|RL10A_MACFA 60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3 Back     alignment and function description
>sp|Q6PC69|RL10A_DANRE 60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
70909667217 ribosomal protein L10Ae [Biphyllus lunat 1.0 0.741 0.925 2e-70
91081145217 PREDICTED: similar to ribosomal protein 1.0 0.741 0.913 1e-69
264667339217 ribosomal protein L10A [Chrysomela tremu 1.0 0.741 0.913 3e-69
332374234217 unknown [Dendroctonus ponderosae] 1.0 0.741 0.906 3e-69
70909669217 ribosomal protein L10Ae [Cicindela litto 1.0 0.741 0.888 6e-69
70909673217 ribosomal protein L10Ae [Georissus sp. A 1.0 0.741 0.881 6e-68
70909675218 ribosomal protein L10Ae [Scarabaeus lati 1.0 0.738 0.895 1e-67
263173415217 60S ribosomal protein L10A [Cimex lectul 1.0 0.741 0.875 4e-67
240849573217 ribosomal protein L10Ae-like [Acyrthosip 1.0 0.741 0.881 4e-67
242011705217 60S ribosomal protein L10A, putative [Pe 1.0 0.741 0.869 8e-67
>gi|70909667|emb|CAJ17256.1| ribosomal protein L10Ae [Biphyllus lunatus] Back     alignment and taxonomy information
 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/161 (92%), Positives = 154/161 (95%)

Query: 1   MQSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPR 60
           M SKVSRDTLYECVNGVLN +K  K+ FL+TVE+QIGLKNYDPQKDKRFSGTVKLKHIPR
Sbjct: 1   MSSKVSRDTLYECVNGVLNQSKEKKRNFLETVEIQIGLKNYDPQKDKRFSGTVKLKHIPR 60

Query: 61  PKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQI 120
           PKMQVCILGDQQHCDEAKA NVPFMDVEALKKLNKNKKLVKKLAKKYDAFLAS+ALIKQI
Sbjct: 61  PKMQVCILGDQQHCDEAKANNVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASEALIKQI 120

Query: 121 PRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
           PRLLGPGLNKAGKFPGLLSHQESMTQKIDEVK TIKFQMKK
Sbjct: 121 PRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKK 161

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91081145|ref|XP_975558.1| PREDICTED: similar to ribosomal protein L10Ae [Tribolium castaneum] gi|270005283|gb|EFA01731.1| hypothetical protein TcasGA2_TC007324 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|264667339|gb|ACY71255.1| ribosomal protein L10A [Chrysomela tremula] Back     alignment and taxonomy information
>gi|332374234|gb|AEE62258.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|70909669|emb|CAJ17257.1| ribosomal protein L10Ae [Cicindela littoralis] Back     alignment and taxonomy information
>gi|70909673|emb|CAJ17259.1| ribosomal protein L10Ae [Georissus sp. APV-2005] Back     alignment and taxonomy information
>gi|70909675|emb|CAJ17260.1| ribosomal protein L10Ae [Scarabaeus laticollis] Back     alignment and taxonomy information
>gi|263173415|gb|ACY69936.1| 60S ribosomal protein L10A [Cimex lectularius] Back     alignment and taxonomy information
>gi|240849573|ref|NP_001155568.1| ribosomal protein L10Ae-like [Acyrthosiphon pisum] gi|239789044|dbj|BAH71171.1| ACYPI004435 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242011705|ref|XP_002426587.1| 60S ribosomal protein L10A, putative [Pediculus humanus corporis] gi|212510736|gb|EEB13849.1| 60S ribosomal protein L10A, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
FB|FBgn0036213217 RpL10Ab "Ribosomal protein L10 1.0 0.741 0.745 1.9e-58
UNIPROTKB|Q5E9E6217 RPL10A "60S ribosomal protein 1.0 0.741 0.658 8.9e-54
UNIPROTKB|P62906217 RPL10A "60S ribosomal protein 1.0 0.741 0.658 8.9e-54
RGD|620497217 Rpl10a "ribosomal protein L10A 1.0 0.741 0.658 8.9e-54
UNIPROTKB|E2R9V0217 RPL10A "Ribosomal protein" [Ca 0.987 0.732 0.660 3e-53
MGI|MGI:1343877217 Rpl10a "ribosomal protein L10A 1.0 0.741 0.652 3e-53
RGD|1566137217 RGD1566137 "similar to ribosom 1.0 0.741 0.652 3e-53
ZFIN|ZDB-GENE-030131-2025216 rpl10a "ribosomal protein L10a 0.987 0.736 0.660 1.7e-52
RGD|1559639217 RGD1559639 "similar to ribosom 1.0 0.741 0.633 3.5e-52
UNIPROTKB|E1BKD0217 E1BKD0 "Ribosomal protein" [Bo 1.0 0.741 0.639 4.4e-52
FB|FBgn0036213 RpL10Ab "Ribosomal protein L10Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 120/161 (74%), Positives = 128/161 (79%)

Query:     1 MQSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPR 60
             M SKVSRDTLYE VNG+L  +   K+ FL+TVELQIGLKNYDPQKDKRFSGTVKLKHIPR
Sbjct:     1 MASKVSRDTLYEGVNGLLEASAKKKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPR 60

Query:    61 PKMQVCILGDQQHCDEAKAANVPFMDVEXXXXXXXXXXXXXXXXXXYDAFLASDALIKQI 120
             PKM+VCILGDQQHCDEAKA NV FMD E                  YDAFLAS++LIKQI
Sbjct:    61 PKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQI 120

Query:   121 PRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
             PRLLGPGLNKAGKFP LLSHQESM  KI+EVK TIKFQMKK
Sbjct:   121 PRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKK 161
GO:0003735 "structural constituent of ribosome" evidence=ISS
GO:0006412 "translation" evidence=ISS
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS
GO:0003723 "RNA binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0051298 "centrosome duplication" evidence=IMP
UNIPROTKB|Q5E9E6 RPL10A "60S ribosomal protein L10a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P62906 RPL10A "60S ribosomal protein L10a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620497 Rpl10a "ribosomal protein L10A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9V0 RPL10A "Ribosomal protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1343877 Rpl10a "ribosomal protein L10A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1566137 RGD1566137 "similar to ribosomal protein L10a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2025 rpl10a "ribosomal protein L10a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1559639 RGD1559639 "similar to ribosomal protein L10a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BKD0 E1BKD0 "Ribosomal protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35024RL1_SULACNo assigned EC number0.30570.88810.6470yesN/A
Q9Y9W6RL1_AERPENo assigned EC number0.31150.82600.6129yesN/A
P53026RL10A_MOUSENo assigned EC number0.76391.00.7419yesN/A
P53027RL10A_PIGNo assigned EC number0.75151.00.9757yesN/A
O14363RL1A_SCHPONo assigned EC number0.64150.98750.7361yesN/A
P0CX43RL1A_YEASTNo assigned EC number0.58120.98750.7327yesN/A
Q6FRF5RL10A_CANGANo assigned EC number0.58120.98750.7327yesN/A
Q755D9RL10A_ASHGONo assigned EC number0.59370.98750.7327yesN/A
P0CX44RL1B_YEASTNo assigned EC number0.58120.98750.7327yesN/A
Q5JH35RL1_PYRKONo assigned EC number0.31410.94400.7037yesN/A
Q86L05RL10A_DICDINo assigned EC number0.58120.98750.7327yesN/A
Q90YV8RL10A_ICTPUNo assigned EC number0.76100.98750.7361N/AN/A
Q7ZYS8RL10A_XENLANo assigned EC number0.77011.00.7419N/AN/A
Q6PC69RL10A_DANRENo assigned EC number0.77350.98750.7361yesN/A
P62907RL10A_RATNo assigned EC number0.77011.00.7419yesN/A
P62906RL10A_HUMANNo assigned EC number0.77011.00.7419yesN/A
Q8VZB9R10A1_ARATHNo assigned EC number0.65400.98750.7361yesN/A
A0B922RL1_METTPNo assigned EC number0.31110.82600.6273yesN/A
Q971J1RL1_SULTONo assigned EC number0.35090.85090.6255yesN/A
Q963B6RL10A_SPOFRNo assigned EC number0.87571.00.7419N/AN/A
A4YH88RL1_METS5No assigned EC number0.31570.85710.6330yesN/A
Q5E9E6RL10A_BOVINNo assigned EC number0.77011.00.7419yesN/A
O28782RL1_ARCFUNo assigned EC number0.31870.94400.7069yesN/A
Q4R5P3RL10A_MACFANo assigned EC number0.75771.00.7419N/AN/A
Q9VTP4R10AB_DROMENo assigned EC number0.85091.00.7419yesN/A
A1RWQ3RL1_THEPDNo assigned EC number0.31090.96890.6933yesN/A
P96038RL1_SULSONo assigned EC number0.30130.89440.6605yesN/A
Q9N4I4RL10A_CAEELNo assigned EC number0.64150.98750.7361yesN/A
P59230R10A2_ARATHNo assigned EC number0.66030.98750.7361yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
PTZ00029216 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr 1e-77
PTZ00225214 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Pr 1e-52
cd00403208 cd00403, Ribosomal_L1, Ribosomal protein L1 3e-42
pfam00687200 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10 2e-36
COG0081228 COG0081, RplA, Ribosomal protein L1 [Translation, 3e-24
PRK04203215 PRK04203, rpl1P, 50S ribosomal protein L1P; Review 2e-19
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional Back     alignment and domain information 
 Score =  229 bits (586), Expect = 1e-77
 Identities = 98/159 (61%), Positives = 130/159 (81%)

Query: 3   SKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPK 62
           SK+S + L + +  +L  ++  K++F++TVELQIGLK+YD QKDKRFSG+VKL ++P+P 
Sbjct: 2   SKLSSEALRKAIAEILEGSEEKKRKFVETVELQIGLKDYDTQKDKRFSGSVKLPNVPKPN 61

Query: 63  MQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPR 122
           ++VC+LGD  HCDEAK   + FMD+E LKK NKNKKLVKKLAKKYDAFLAS +L+ QIPR
Sbjct: 62  LKVCVLGDAVHCDEAKKLGLDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIPR 121

Query: 123 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
           LLGPGLNKAGKFP L++H + +  KI+E+K ++KFQ+KK
Sbjct: 122 LLGPGLNKAGKFPTLITHNDDIEDKINELKSSVKFQLKK 160

Length = 216
>gnl|CDD|140252 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1 Back     alignment and domain information
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family Back     alignment and domain information
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 161
PTZ00225214 60S ribosomal protein L10a; Provisional 100.0
PTZ00029216 60S ribosomal protein L10a; Provisional 100.0
PRK04203215 rpl1P 50S ribosomal protein L1P; Reviewed 100.0
COG0081228 RplA Ribosomal protein L1 [Translation, ribosomal 100.0
CHL00129229 rpl1 ribosomal protein L1; Reviewed 100.0
PRK05424230 rplA 50S ribosomal protein L1; Validated 100.0
TIGR01169227 rplA_bact ribosomal protein L1, bacterial/chloropl 100.0
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 100.0
cd00403208 Ribosomal_L1 Ribosomal protein L1. The L1 protein, 100.0
KOG1570|consensus218 100.0
PF00687220 Ribosomal_L1: Ribosomal protein L1p/L10e family; I 99.96
KOG1569|consensus323 99.76
KOG1685|consensus 343 99.48
PF13003133 MRL1: Ribosomal protein L1; InterPro: IPR024663 Th 91.99
PRK02228100 V-type ATP synthase subunit F; Provisional 81.23
PRK01189104 V-type ATP synthase subunit F; Provisional 80.57
>PTZ00225 60S ribosomal protein L10a; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.8e-50  Score=324.40  Aligned_cols=158  Identities=52%  Similarity=0.861  Sum_probs=152.9

Q ss_pred             CCcCChHHHHHHHHHHHhcccccccccceEEEEEEEEeecCCCCCcceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCC
Q psy8483           2 QSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAAN   81 (161)
Q Consensus         2 ~s~~~~~~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk~~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag   81 (161)
                      ||+++++++.+||+.+++.  .++++|+|||||+|+||||||++++++||+|.||||+|++.+||||++++++++|+++|
T Consensus         1 m~k~~~~~i~~Av~~~lk~--~~~~kF~Etvdl~v~Lk~iDp~kd~~irg~v~LPhg~gk~~kV~v~~~~~~~~~Ak~aG   78 (214)
T PTZ00225          1 MSKIPPQTLSEAIQAVLKV--DKERKFKESIDLQVNLKNYDPQKDKRFSGSLKLPNVCRPRMTVCLLCDLVHEDIAKKEG   78 (214)
T ss_pred             CCcCCHHHHHHHHHHHHHh--cccCCCCceEEEEEeccCcCCCcCcccceeEECCCCCCCCcEEEEECChHHHHHHHHCC
Confidence            6889999999999998865  48999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCCCccHHHHHHHHhccceeeecC
Q psy8483          82 VPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK  161 (161)
Q Consensus        82 ~~vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~~~dl~~~i~~~~~~v~~r~kk  161 (161)
                      |+++|.+||+++.++++++|+|+.+||+|||++++||+|||+||+.|||+||||+|.++++|+.+.|++++++++||+++
T Consensus        79 ad~v~~e~l~~l~k~~~~~kkl~~~fD~fiA~~~~m~~lgk~LGp~~~p~gK~P~~~~~~~dl~~~i~~~k~~v~~r~~k  158 (214)
T PTZ00225         79 VPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRMGKFPTVCSPSESLPDKVVELRSTVKFQLKK  158 (214)
T ss_pred             CCEECHHHHHHHHhccHHHHHHHhhCCEEEECHHHHHhhhhhcCCCCCcCCCCCcccCCccCHHHHHHHHhheeEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999985

>PTZ00029 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00129 rpl1 ribosomal protein L1; Reviewed Back     alignment and domain information
>PRK05424 rplA 50S ribosomal protein L1; Validated Back     alignment and domain information
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information
>cd00403 Ribosomal_L1 Ribosomal protein L1 Back     alignment and domain information
>KOG1570|consensus Back     alignment and domain information
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1569|consensus Back     alignment and domain information
>KOG1685|consensus Back     alignment and domain information
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates Back     alignment and domain information
>PRK02228 V-type ATP synthase subunit F; Provisional Back     alignment and domain information
>PRK01189 V-type ATP synthase subunit F; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
3izr_A216 Localization Of The Large Subunit Ribosomal Protein 2e-50
1s1i_A217 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-38
2noq_G213 Structure Of Ribosome-Bound Cricket Paralysis Virus 3e-37
3zf7_J214 High-resolution Cryo-electron Microscopy Structure 2e-34
3j21_A216 Promiscuous Behavior Of Proteins In Archaeal Riboso 7e-05
>pdb|3IZR|A Chain A, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 216 Back     alignment and structure 
Iteration: 1

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 116/159 (72%)
Query: 3   SKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPK 62
           SK+  D + + +  ++  A+  K++F +TVELQIGLKNYDPQKDKRFSG+VKL HIPRPK
Sbjct: 2   SKLQSDAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 63  MQVCILGDQQHCDEAKAANVPFMDVEXXXXXXXXXXXXXXXXXXYDAFLASDALIKQIPR 122
           M+VC+LGD QH D+A+   + +MDVE                  Y AFLAS+A+IKQIPR
Sbjct: 62  MRVCMLGDAQHVDQAEKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 123 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
           LLGPGLNKAGKFP L+SHQES+  K++E K T+KFQ+KK
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKK 160
>pdb|1S1I|A Chain A, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 217 Back     alignment and structure
>pdb|2NOQ|G Chain G, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 213 Back     alignment and structure
>pdb|3ZF7|J Chain J, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 214 Back     alignment and structure
>pdb|3J21|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 3e-67
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 4e-65
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 5e-60
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 2e-59
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 1e-56
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Length = 217 Back     alignment and structure
 Score =  202 bits (516), Expect = 3e-67
 Identities = 93/160 (58%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 3   SKVSRDTLYECVNGVLNNAKVNKKR-FLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRP 61
           SK++   + E V  +L  +   KKR FL+TVELQ+GLKNYDPQ+DKRFSG++KL + PRP
Sbjct: 2   SKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRP 61

Query: 62  KMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIP 121
            M +CI GD    D AK+  V  M V+ LKKLNKNKKL+KKL+KKY+AF+AS+ LIKQ+P
Sbjct: 62  NMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVP 121

Query: 122 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
           RLLGP L+KAGKFP  +SH + +  K+ +V+ TIKFQ+KK
Sbjct: 122 RLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKK 161
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Length = 217 Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 212 Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Length = 219 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 100.0
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 100.0
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 100.0
3j21_A216 50S ribosomal protein L1P; archaea, archaeal, KINK 100.0
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 100.0
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 100.0
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 100.0
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 100.0
3u42_A229 50S ribosomal protein L1; rossmann fold, rRNA bind 100.0
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 100.0
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 99.97
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 99.3
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Back     alignment and structure
Probab=100.00  E-value=1.5e-48  Score=316.14  Aligned_cols=158  Identities=27%  Similarity=0.416  Sum_probs=150.9

Q ss_pred             cCChHHHHHHHHHHHhcccccccccceEEEEEEEEeecCCCCC-cceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCCC
Q psy8483           4 KVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKD-KRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANV   82 (161)
Q Consensus         4 ~~~~~~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk~-~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag~   82 (161)
                      .+++|++.+||++++++++.++++|+|||||+|+||+|||++| +++||+|.|||+++++.+||||++++++++|+++||
T Consensus         2 ~v~~~~l~~Av~~ll~~~~~~~~kf~etvel~i~LK~~dp~~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa   81 (217)
T 1mzp_A            2 LADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASP   81 (217)
T ss_dssp             CCCHHHHHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCC
T ss_pred             ccCHHHHHHHHHHHHhhccccccCCCccEEEEEEecCCCCcccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCC
Confidence            3789999999999998866688999999999999999999987 899999999999999999999999999999999999


Q ss_pred             C-CCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCCCccHHHHHHHHhccceeeecC
Q psy8483          83 P-FMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK  161 (161)
Q Consensus        83 ~-vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~~~dl~~~i~~~~~~v~~r~kk  161 (161)
                      + +||.+||+++.++++++|+|+.+||+|||++++||+|+++||++||||||||+|++++.|+.+.|++++++++||++|
T Consensus        82 d~~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~gt~dv~~~v~~~k~~v~~r~~k  161 (217)
T 1mzp_A           82 KVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKD  161 (217)
T ss_dssp             SEECCHHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSSSCCHHHHHHHHTEEEEECSS
T ss_pred             CeeeCHHHHHHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCCCccHHHHHHHHhcceEEEecC
Confidence            8 999999988888899999999999999999999999999999999999999999999999999999999999999875
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Back     alignment and structure
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Back     alignment and structure
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ... Back     alignment and structure
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 161
d1mzpa_217 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfo 1e-26
d1i2aa_212 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Metha 3e-25
d1ad2a_224 e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermo 2e-13
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 97.9 bits (243), Expect = 1e-26
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 5   VSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKM 63
             +++L E +   L+     K+ F Q+VE+ +  K  D +K D +    V L   P    
Sbjct: 3   ADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAK 62

Query: 64  QVCILGDQQHCDEAKAANV-PFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPR 122
           +V ++   +  + AK A+    +  E L+KL   K+ VKKLA++ + FL +   +    R
Sbjct: 63  RVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGR 122

Query: 123 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
           +LGP L   GKFP  L +   +++ I+  K ++  + K 
Sbjct: 123 ILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKD 161
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 Back     information, alignment and structure
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Length = 224 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
d1i2aa_212 Ribosomal protein L1 {Archaeon Methanococcus janna 100.0
d1mzpa_217 Ribosomal protein L1 {Archaeon Sulfolobus acidocal 100.0
d1ad2a_224 Ribosomal protein L1 {Thermus thermophilus [TaxId: 100.0
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=8.3e-48  Score=308.41  Aligned_cols=155  Identities=24%  Similarity=0.405  Sum_probs=149.2

Q ss_pred             CChHHHHHHHHHHHhcccccccccceEEEEEEEEeecCCCC-CcceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCCCC
Q psy8483           5 VSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVP   83 (161)
Q Consensus         5 ~~~~~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk-~~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag~~   83 (161)
                      +++|++.+||+.+++.  +++|+|+||||++|+|++||+++ ++++||+|.||||+|++.+|||||+++.+++|+++||+
T Consensus         1 ~~~~~~~~ai~~~~~~--~k~rkF~esvel~i~Lk~iD~kk~d~~irg~v~LPh~~gk~~kV~Vf~~~e~~~~Ak~aga~   78 (212)
T d1i2aa_           1 MDREALLQAVKEAREL--AKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLT   78 (212)
T ss_dssp             CCHHHHHHHHHHHHHH--SCCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHh--CCccCCCceEEEEEecCCCCCCcccceeeeEeeCCCCCCCcceEEEEechhhHHHhhhcccc
Confidence            5899999999999998  57899999999999999999999 99999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCCCccHHHHHHHHhccceeeecC
Q psy8483          84 FMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK  161 (161)
Q Consensus        84 vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~~~dl~~~i~~~~~~v~~r~kk  161 (161)
                      ++|.+||.++.++++.+++++.+||+|||+|++||.|+++||++|||||+||+|+++|.|+.+.|+++++++.++.++
T Consensus        79 ~vg~~el~~~~~~~~~~kk~~~~~D~~iat~~~m~~l~k~lgkiLGpkglmP~p~~~t~di~~~v~~~k~~~~~~~~~  156 (212)
T d1i2aa_          79 VIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRD  156 (212)
T ss_dssp             EECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTTCCCHHHHHHHHTEEEEECTT
T ss_pred             ccCcHHHHHHHhhhhhhhcccccCCeEEecchHHHHHHHHhhhhhhhhhccccCCcccchhhHHHHHHhcceeeeecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998764
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure