Psyllid ID: psy8490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MLLNIRVILESRLKNIGRAYRSYKSIPLDMELSVKYQVPSQAELPTMNSPYDNTGGFQTVPNGTAAPTGPSEAGGPPAWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR
Secondary Structure (PSIPRED)
ccccHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEccccEEEEccHHHHHHHHHcccccccccHHHHHHHHHccHHHHcccEEEEcccEEEEEcccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEcccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccHHccccccHHHHHHHHHccHHHccccEEcccccEEEcccHHHHHHHHHHHHccccccHHHHHHHHHccccEEEcccHHHHHHHHHHHcccccccHHHHHHHHH
Coil and Loop (DISEMBL)
MLLNIRVILESRLKNIGRAYrsyksipldmelsvkyqvpsqaelptmnspydntggfqtvpngtaaptgpseaggppawpspdvqflptgrgeapsyyyssfsdskppyvqpasmlagysgsgpcftgsgpIQLWQFLLELLTDKTCQAFISwtgdgwefkltdpdevarrwgirknkpkmnyEKLSRglrrktgyeKASRFEKVARRwgirknkpkmnyEKLSRGLR
Flexible Loop (DISEMBL)
MLLNIRVILESRLKNIGRAYRSYKSIPLDMELSVKYQVPSQAELPTMNSPYDNTGGFQTVPNGTAAPTGPSEAGGPPAWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISwtgdgwefkltdpdevarrwgirknkpkmnyeklsrglrrktgyekasrfekvarrwgirknkpkmnyeklsrglr
Low Complexity Region (SEG)
MLLNIRVILESRLKNIGRAYRSYKSIPLDMELSVKYQVPSQAELPTMNSPYDNTGGFQTVPNGTAAPTGPSEAGGPPAWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR
Disordered region (IsUnstruct)
**LNIRVILESRLKNIGRAYRSYKSIPLDMELSVKY******************************************************************************MLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIR*********************************W*******************
Disordered Region (DISOPRED)
*************************************************************************************************************************************LWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIRKNKPKMNYEKLS****
Disordered Region (DISEMBL)
MLLNIRVILESRLKNIGRAYRSYKSIPLDMELSVKYQVPSQAELPTMNSPYDNTGGFQTVPNGTAA***********AWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR
Disordered Region (DISPRO)
MLLNIRVILESRLKNIGRAYRSYKSIPLDMELSVKYQVPS********************************************************************YVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLNIRVILESRLKNIGRAYRSYKSIPLDMELSVKYQVPSQAELPTMNSPYDNTGGFQTVPNGTAAPTGPSEAGGPPAWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
P19102	472	Protein c-ets-2-A OS=Xeno	N/A	N/A	0.328	0.158	0.853	1e-34
Q91712	472	Protein c-ets-2-B OS=Xeno	N/A	N/A	0.328	0.158	0.841	6e-34
P18755	438	Protein c-ets-1-A OS=Xeno	N/A	N/A	0.535	0.278	0.583	6e-34
P18756	268	Protein c-ets-1-B (Fragme	N/A	N/A	0.535	0.455	0.583	7e-34
P10157	479	Protein C-ets-2 OS=Gallus	yes	N/A	0.328	0.156	0.829	8e-34
P51022	623	ETS-like protein pointed,	yes	N/A	0.394	0.144	0.771	1e-33
P13474	441	Transforming protein p54/	no	N/A	0.412	0.213	0.699	1e-33
P01105	669	p135Gag-Myb-Ets-transform	N/A	N/A	0.412	0.140	0.689	1e-33
P27577	440	Protein C-ets-1 OS=Mus mu	yes	N/A	0.412	0.213	0.699	1e-33
P14921	441	Protein C-ets-1 OS=Homo s	no	N/A	0.412	0.213	0.699	1e-33

>sp|P19102|ETS2A_XENLA Protein c-ets-2-A OS=Xenopus laevis GN=ets2-a PE=2 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/82 (85%), Positives = 73/82 (89%), Gaps = 7/82 (8%)

Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PAS+LAG       FTGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKLTDPDEVA
Sbjct: 351 VIPASILAG-------FTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLTDPDEVA 403

Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
           RRWG RKNKPKMNYEKLSRGLR
Sbjct: 404 RRWGKRKNKPKMNYEKLSRGLR 425

Xenopus laevis (taxid: 8355)

>sp|Q91712|ETS2B_XENLA Protein c-ets-2-B OS=Xenopus laevis GN=ets2-b PE=2 SV=1

 Score =  144 bits (362), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 72/82 (87%), Gaps = 7/82 (8%)

Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PAS+LAG       FTGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL DPDEVA
Sbjct: 351 VIPASILAG-------FTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLADPDEVA 403

Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
           RRWG RKNKPKMNYEKLSRGLR
Sbjct: 404 RRWGKRKNKPKMNYEKLSRGLR 425

Xenopus laevis (taxid: 8355)

>sp|P18755|ETS1A_XENLA Protein c-ets-1-A OS=Xenopus laevis GN=ets1-a PE=2 SV=1

 Score =  144 bits (362), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 90/137 (65%), Gaps = 15/137 (10%)

Query: 76  PPAWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLW 135
           PPA PS         +G    Y       +K   V PA+ LAGY       TGSGPIQLW
Sbjct: 289 PPAMPSH------KSKGTFKDYVRDRAELNKDKPVIPAAALAGY-------TGSGPIQLW 335

Query: 136 QFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTG 195
           QFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    
Sbjct: 336 QFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY-- 393

Query: 196 YEKASRFEKVARRWGIR 212
           Y+K    +   +R+  R
Sbjct: 394 YDKNIIHKTAGKRYVYR 410

Xenopus laevis (taxid: 8355)

>sp|P18756|ETS1B_XENLA Protein c-ets-1-B (Fragment) OS=Xenopus laevis GN=ets1-b PE=2 SV=1

 Score =  144 bits (362), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 90/137 (65%), Gaps = 15/137 (10%)

Query: 76  PPAWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLW 135
           PPA PS         +G    Y       +K   V PA+ LAGY       TGSGPIQLW
Sbjct: 119 PPALPSH------KSKGTFKDYVRDRAELNKDKPVIPAAALAGY-------TGSGPIQLW 165

Query: 136 QFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTG 195
           QFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    
Sbjct: 166 QFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY-- 223

Query: 196 YEKASRFEKVARRWGIR 212
           Y+K    +   +R+  R
Sbjct: 224 YDKNIIHKTAGKRYVYR 240

Xenopus laevis (taxid: 8355)

>sp|P10157|ETS2_CHICK Protein C-ets-2 OS=Gallus gallus GN=ETS2 PE=2 SV=1

 Score =  143 bits (361), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/82 (82%), Positives = 72/82 (87%), Gaps = 7/82 (8%)

Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA++LAG       FTGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL DPDEVA
Sbjct: 358 VIPAAILAG-------FTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLADPDEVA 410

Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
           RRWG RKNKPKMNYEKLSRGLR
Sbjct: 411 RRWGRRKNKPKMNYEKLSRGLR 432

Gallus gallus (taxid: 9031)

>sp|P51022|PNT1_DROME ETS-like protein pointed, isoform P1 OS=Drosophila melanogaster GN=pnt PE=2 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 76/92 (82%), Gaps = 2/92 (2%)

Query: 121 GSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPK 180
           G  PCFTGSGPIQLWQFLLELL DKTCQ+FISWTGDGWEFKLTDPDEVARRWGIRKNKPK
Sbjct: 504 GGVPCFTGSGPIQLWQFLLELLLDKTCQSFISWTGDGWEFKLTDPDEVARRWGIRKNKPK 563

Query: 181 MNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           MNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 564 MNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 593

Required for glial-neuronal cell interactions at the ventral midline which are necessary for the proper elaboration of commissures in the embryonic CNS.

Drosophila melanogaster (taxid: 7227)

>sp|P13474|ETS1A_CHICK Transforming protein p54/c-ets-1 OS=Gallus gallus GN=ETS1 PE=2 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 80/103 (77%), Gaps = 9/103 (8%)

Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 320 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 372

Query: 170 RRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           RRWG RKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 373 RRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 413

This protein is the normal cellular product of chicken ETS. In the E26 virus, ETS is responsible for erythroblast transformation.

Gallus gallus (taxid: 9031)

>sp|P01105|MYBE_AVILE p135Gag-Myb-Ets-transforming protein (Fragment) OS=Avian leukemia virus E26 GN=GAG PE=4 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 80/103 (77%), Gaps = 9/103 (8%)

Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 545 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 597

Query: 170 RRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           RRWG RKNKPKM+YEKLSRGLR    Y+K    +   +R+  R
Sbjct: 598 RRWGKRKNKPKMDYEKLSRGLRYY--YDKNVIHKTAGKRYVYR 638

DNA-binding protein that specifically recognizes the sequence 5'-YAAC[GT]G-3'. The Myb-Ets protein induces predominantly erythroblastosis in chicken and transforms avian erythroblasts and immature myelomonocytic cells in culture. It appears that the Ets domain is responsible for the effects on erythroid cells and that the Myb domain encodes the myeloid-transforming capacity.

Galliformes (taxid: 8976)

>sp|P27577|ETS1_MOUSE Protein C-ets-1 OS=Mus musculus GN=Ets1 PE=1 SV=2

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 80/103 (77%), Gaps = 9/103 (8%)

Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 320 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 372

Query: 170 RRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           RRWG RKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 373 RRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 413

Transcription factor.

Mus musculus (taxid: 10090)

>sp|P14921|ETS1_HUMAN Protein C-ets-1 OS=Homo sapiens GN=ETS1 PE=1 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 80/103 (77%), Gaps = 9/103 (8%)

Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 320 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 372

Query: 170 RRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           RRWG RKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 373 RRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 413

Transcription factor.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
242017233	262	protein C-ets-1-B, putative [Pediculus h	0.631	0.549	0.561	2e-40
307212300	441	Transforming protein p54/c-ets-1 [Harpeg	0.464	0.240	0.718	4e-39
328785918	687	PREDICTED: hypothetical protein LOC41291	0.460	0.152	0.715	4e-38
383862764	683	PREDICTED: uncharacterized protein LOC10	0.460	0.153	0.715	4e-38
340719636	680	PREDICTED: hypothetical protein LOC10064	0.464	0.155	0.7	6e-38
350400995	681	PREDICTED: hypothetical protein LOC10074	0.464	0.155	0.7	6e-38
380029786	593	PREDICTED: uncharacterized protein LOC10	0.460	0.177	0.715	7e-38
340719638	593	PREDICTED: hypothetical protein LOC10064	0.464	0.178	0.7	1e-37
307178865	457	Transforming protein p54/c-ets-1 [Campon	0.460	0.229	0.718	1e-37
332019181	454	Transforming protein p54/c-ets-1 [Acromy	0.464	0.233	0.720	1e-37

>gi|242017233|ref|XP_002429096.1| protein C-ets-1-B, putative [Pediculus humanus corporis] gi|212513960|gb|EEB16358.1| protein C-ets-1-B, putative [Pediculus humanus corporis]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 112/171 (65%), Gaps = 27/171 (15%)

Query: 46  TMNSPYDNTGGFQTVPNGTAAPTGPSEAGGPPAWPSPDVQFLPTGRGEAPSY---YYSSF 102
           T +SP+D  G FQTVP+                W         +G+   P++   Y   F
Sbjct: 85  TYSSPFDG-GPFQTVPSSVNGE----------HW---------SGQDSHPAFLMGYQRDF 124

Query: 103 SDSKP-PYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFK 161
            + +  P++Q A M+AGYSG GPCFTGSGPIQLWQFLLELLTDKTCQ FISWTGDGWEFK
Sbjct: 125 QNGEAKPFLQSA-MIAGYSGGGPCFTGSGPIQLWQFLLELLTDKTCQGFISWTGDGWEFK 183

Query: 162 LTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           LTDPDEVARRWGIRKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 184 LTDPDEVARRWGIRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 232

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212300|gb|EFN88108.1| Transforming protein p54/c-ets-1 [Harpegnathos saltator]

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 89/110 (80%), Gaps = 4/110 (3%)

Query: 103 SDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKL 162
           +D KP  +  ++ML GY+G GPCFTGSGPIQLWQFLLELLTDK+CQ FISWTGDGWEFKL
Sbjct: 306 ADQKP--LLQSTMLPGYAGGGPCFTGSGPIQLWQFLLELLTDKSCQGFISWTGDGWEFKL 363

Query: 163 TDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           TDPDEVARRWGIRKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 364 TDPDEVARRWGIRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 411

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785918|ref|XP_003250677.1| PREDICTED: hypothetical protein LOC412916 [Apis mellifera]

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 88/109 (80%), Gaps = 4/109 (3%)

Query: 104 DSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLT 163
           D KP  +  ++M+ GY+ SGPCFTGSGPIQLWQFLLELLTDK+CQ FISWTGDGWEFKLT
Sbjct: 553 DQKP--LLQSAMIPGYTSSGPCFTGSGPIQLWQFLLELLTDKSCQGFISWTGDGWEFKLT 610

Query: 164 DPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           DPDEVARRWGIRKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 611 DPDEVARRWGIRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 657

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862764|ref|XP_003706853.1| PREDICTED: uncharacterized protein LOC100878829 [Megachile rotundata]

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 88/109 (80%), Gaps = 4/109 (3%)

Query: 104 DSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLT 163
           D KP  +  ++M+ GY+ SGPCFTGSGPIQLWQFLLELLTDK+CQ FISWTGDGWEFKLT
Sbjct: 549 DQKP--LLQSAMIPGYTSSGPCFTGSGPIQLWQFLLELLTDKSCQGFISWTGDGWEFKLT 606

Query: 164 DPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           DPDEVARRWGIRKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 607 DPDEVARRWGIRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 653

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719636|ref|XP_003398254.1| PREDICTED: hypothetical protein LOC100644371 isoform 1 [Bombus terrestris]

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 89/110 (80%), Gaps = 4/110 (3%)

Query: 103 SDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKL 162
           +D KP  +  ++M+ GY+ +GPCFTGSGPIQLWQFLLELLTDK+CQ FISWTGDGWEFKL
Sbjct: 545 ADQKP--LLQSAMIPGYTSTGPCFTGSGPIQLWQFLLELLTDKSCQGFISWTGDGWEFKL 602

Query: 163 TDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           TDPDEVARRWGIRKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 603 TDPDEVARRWGIRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 650

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400995|ref|XP_003486023.1| PREDICTED: hypothetical protein LOC100745810 isoform 2 [Bombus impatiens]

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 89/110 (80%), Gaps = 4/110 (3%)

Query: 103 SDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKL 162
           +D KP  +  ++M+ GY+ +GPCFTGSGPIQLWQFLLELLTDK+CQ FISWTGDGWEFKL
Sbjct: 546 ADQKP--LLQSAMIPGYTSTGPCFTGSGPIQLWQFLLELLTDKSCQGFISWTGDGWEFKL 603

Query: 163 TDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           TDPDEVARRWGIRKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 604 TDPDEVARRWGIRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 651

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029786|ref|XP_003698546.1| PREDICTED: uncharacterized protein LOC100864450 [Apis florea]

 Score =  162 bits (411), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 88/109 (80%), Gaps = 4/109 (3%)

Query: 104 DSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLT 163
           D KP  +  ++M+ GY+ SGPCFTGSGPIQLWQFLLELLTDK+CQ FISWTGDGWEFKLT
Sbjct: 459 DQKP--LLQSAMIPGYTSSGPCFTGSGPIQLWQFLLELLTDKSCQGFISWTGDGWEFKLT 516

Query: 164 DPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           DPDEVARRWGIRKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 517 DPDEVARRWGIRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 563

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719638|ref|XP_003398255.1| PREDICTED: hypothetical protein LOC100644371 isoform 2 [Bombus terrestris] gi|350400992|ref|XP_003486022.1| PREDICTED: hypothetical protein LOC100745810 isoform 1 [Bombus impatiens]

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 89/110 (80%), Gaps = 4/110 (3%)

Query: 103 SDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKL 162
           +D KP  +  ++M+ GY+ +GPCFTGSGPIQLWQFLLELLTDK+CQ FISWTGDGWEFKL
Sbjct: 458 ADQKP--LLQSAMIPGYTSTGPCFTGSGPIQLWQFLLELLTDKSCQGFISWTGDGWEFKL 515

Query: 163 TDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           TDPDEVARRWGIRKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 516 TDPDEVARRWGIRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 563

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178865|gb|EFN67410.1| Transforming protein p54/c-ets-1 [Camponotus floridanus]

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 87/110 (79%), Gaps = 5/110 (4%)

Query: 103 SDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKL 162
           +D KP    P  MLA Y+G GPCFTGSGPIQLWQFLLELLTDK+CQ FISWTGDGWEFKL
Sbjct: 323 ADQKPLLQSP--MLASYAG-GPCFTGSGPIQLWQFLLELLTDKSCQGFISWTGDGWEFKL 379

Query: 163 TDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           TDPDEVARRWG+RKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 380 TDPDEVARRWGVRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 427

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019181|gb|EGI59691.1| Transforming protein p54/c-ets-1 [Acromyrmex echinatior]

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/111 (72%), Positives = 87/111 (78%), Gaps = 5/111 (4%)

Query: 103 SDSKPPYVQPASMLAGYSGSGP-CFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFK 161
           +D KP  +  +SML GY G GP CFTGSGPIQLWQFLLELLTDK CQ FISWTGDGWEFK
Sbjct: 318 ADQKP--LLQSSMLTGYPGGGPPCFTGSGPIQLWQFLLELLTDKACQGFISWTGDGWEFK 375

Query: 162 LTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           LTDPDEVARRWGIRKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 376 LTDPDEVARRWGIRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 424

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
MGI|MGI:95456	468	Ets2 "E26 avian leukemia oncog	0.337	0.164	0.802	1.9e-35
RGD|1584977	470	Ets2 "v-ets erythroblastosis v	0.337	0.163	0.802	5e-35
FB|FBgn0003118	718	pnt "pointed" [Drosophila mela	0.421	0.133	0.74	5.4e-35
UNIPROTKB|F1S6G9	415	ETS1 "Uncharacterized protein"	0.535	0.293	0.583	2e-33
UNIPROTKB|P18755	438	ets1-a "Protein c-ets-1-A" [Xe	0.535	0.278	0.583	3.2e-33
UNIPROTKB|F1P3R9	485	TNIP1 "Uncharacterized protein	0.495	0.232	0.614	1.1e-32
UNIPROTKB|P15062	485	ETS1 "Transforming protein p68	0.495	0.232	0.614	1.1e-32
UNIPROTKB|G9LQW2	441	TNIP1 "ETS-1A" [Gallus gallus	0.495	0.256	0.614	1.1e-32
UNIPROTKB|P13474	441	ETS1 "Transforming protein p54	0.495	0.256	0.614	1.1e-32
UNIPROTKB|A5PJG9	441	ETS1 "Uncharacterized protein"	0.447	0.231	0.654	1.4e-32

MGI|MGI:95456 Ets2 "E26 avian leukemia oncogene 2, 3' domain" [Mus musculus (taxid:10090)]

 Score = 350 (128.3 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
 Identities = 69/86 (80%), Positives = 74/86 (86%)

Query:   106 KPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDP 165
             KP  V PA++LAG       FTGSGPIQLWQFLLELL+DK+CQ+FISWTGDGWEFKL DP
Sbjct:   345 KP--VIPAAVLAG-------FTGSGPIQLWQFLLELLSDKSCQSFISWTGDGWEFKLADP 395

Query:   166 DEVARRWGIRKNKPKMNYEKLSRGLR 191
             DEVARRWG RKNKPKMNYEKLSRGLR
Sbjct:   396 DEVARRWGKRKNKPKMNYEKLSRGLR 421

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0003677 "DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

RGD|1584977 Ets2 "v-ets erythroblastosis virus E26 oncogene homolog 2 (avian)" [Rattus norvegicus (taxid:10116)]

 Score = 350 (128.3 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 69/86 (80%), Positives = 74/86 (86%)

Query:   106 KPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDP 165
             KP  V PA++LAG       FTGSGPIQLWQFLLELL+DK+CQ+FISWTGDGWEFKL DP
Sbjct:   347 KP--VIPAAVLAG-------FTGSGPIQLWQFLLELLSDKSCQSFISWTGDGWEFKLADP 397

Query:   166 DEVARRWGIRKNKPKMNYEKLSRGLR 191
             DEVARRWG RKNKPKMNYEKLSRGLR
Sbjct:   398 DEVARRWGKRKNKPKMNYEKLSRGLR 423

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0035259 "glucocorticoid receptor binding" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

FB|FBgn0003118 pnt "pointed" [Drosophila melanogaster (taxid:7227)]

 Score = 386 (140.9 bits), Expect = 5.4e-35, P = 5.4e-35
 Identities = 74/100 (74%), Positives = 81/100 (81%)

Query:   115 MLAGYSGSG--PCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRW 172
             +L GY+  G  PCFTGSGPIQLWQFLLELL DKTCQ+FISWTGDGWEFKLTDPDEVARRW
Sbjct:   591 LLGGYTTQGGVPCFTGSGPIQLWQFLLELLLDKTCQSFISWTGDGWEFKLTDPDEVARRW 650

Query:   173 GIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
             GIRKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct:   651 GIRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 688

GO:0008293 "torso signaling pathway" evidence=IGI

GO:0007362 "terminal region determination" evidence=IGI

GO:0005634 "nucleus" evidence=ISS;NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0061331 "epithelial cell proliferation involved in Malpighian tubule morphogenesis" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007424 "open tracheal system development" evidence=NAS

GO:0030707 "ovarian follicle cell development" evidence=TAS

GO:0007265 "Ras protein signal transduction" evidence=TAS

GO:0045467 "R7 cell development" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA;IMP

GO:0007429 "secondary branching, open tracheal system" evidence=IMP;TAS

GO:0007507 "heart development" evidence=NAS;TAS

GO:0007157 "heterophilic cell-cell adhesion" evidence=NAS

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0061320 "pericardial nephrocyte differentiation" evidence=IMP

GO:0009997 "negative regulation of cardioblast cell fate specification" evidence=IMP

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

GO:0070491 "repressing transcription factor binding" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045610 "regulation of hemocyte differentiation" evidence=IMP

GO:0035225 "determination of genital disc primordium" evidence=IMP

GO:0007428 "primary branching, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0048747 "muscle fiber development" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0060439 "trachea morphogenesis" evidence=IMP

GO:0050767 "regulation of neurogenesis" evidence=IMP

UNIPROTKB|F1S6G9 ETS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 80/137 (58%), Positives = 89/137 (64%)

Query:    76 PPAWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLW 135
             P A P P  Q      G    Y       +K   V PA+ LAGY       TGSGPIQLW
Sbjct:   266 PAALPQPQAQ------GHLQDYVRDRADLNKDKPVIPAAALAGY-------TGSGPIQLW 312

Query:   136 QFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTG 195
             QFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    
Sbjct:   313 QFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY-- 370

Query:   196 YEKASRFEKVARRWGIR 212
             Y+K    +   +R+  R
Sbjct:   371 YDKNIIHKTAGKRYVYR 387

GO:0051272 "positive regulation of cellular component movement" evidence=IEA

GO:0048870 "cell motility" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045786 "negative regulation of cell cycle" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0030578 "PML body organization" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|P18755 ets1-a "Protein c-ets-1-A" [Xenopus laevis (taxid:8355)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 80/137 (58%), Positives = 90/137 (65%)

Query:    76 PPAWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLW 135
             PPA PS         +G    Y       +K   V PA+ LAGY       TGSGPIQLW
Sbjct:   289 PPAMPSHK------SKGTFKDYVRDRAELNKDKPVIPAAALAGY-------TGSGPIQLW 335

Query:   136 QFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTG 195
             QFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    
Sbjct:   336 QFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY-- 393

Query:   196 YEKASRFEKVARRWGIR 212
             Y+K    +   +R+  R
Sbjct:   394 YDKNIIHKTAGKRYVYR 410

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|F1P3R9 TNIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 75/122 (61%), Positives = 85/122 (69%)

Query:    91 RGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAF 150
             +G    Y       +K   V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+F
Sbjct:   345 KGTFKDYVRDRADMNKDKPVIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSF 397

Query:   151 ISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWG 210
             ISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    Y+K    +   +R+ 
Sbjct:   398 ISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYV 455

Query:   211 IR 212
              R
Sbjct:   456 YR 457

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0030578 "PML body organization" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0045786 "negative regulation of cell cycle" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0048870 "cell motility" evidence=IEA

GO:0051272 "positive regulation of cellular component movement" evidence=IEA

UNIPROTKB|P15062 ETS1 "Transforming protein p68/c-ets-1" [Gallus gallus (taxid:9031)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 75/122 (61%), Positives = 85/122 (69%)

Query:    91 RGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAF 150
             +G    Y       +K   V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+F
Sbjct:   345 KGTFKDYVRDRADMNKDKPVIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSF 397

Query:   151 ISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWG 210
             ISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    Y+K    +   +R+ 
Sbjct:   398 ISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYV 455

Query:   211 IR 212
              R
Sbjct:   456 YR 457

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G9LQW2 TNIP1 "ETS-1A" [Gallus gallus (taxid:9031)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 75/122 (61%), Positives = 85/122 (69%)

Query:    91 RGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAF 150
             +G    Y       +K   V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+F
Sbjct:   301 KGTFKDYVRDRADMNKDKPVIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSF 353

Query:   151 ISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWG 210
             ISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    Y+K    +   +R+ 
Sbjct:   354 ISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYV 411

Query:   211 IR 212
              R
Sbjct:   412 YR 413

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P13474 ETS1 "Transforming protein p54/c-ets-1" [Gallus gallus (taxid:9031)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 75/122 (61%), Positives = 85/122 (69%)

Query:    91 RGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAF 150
             +G    Y       +K   V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+F
Sbjct:   301 KGTFKDYVRDRADMNKDKPVIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSF 353

Query:   151 ISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWG 210
             ISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    Y+K    +   +R+ 
Sbjct:   354 ISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYV 411

Query:   211 IR 212
              R
Sbjct:   412 YR 413

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A5PJG9 ETS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 74/113 (65%), Positives = 84/113 (74%)

Query:   100 SSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWE 159
             +  +  KP  V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWE
Sbjct:   312 ADLNKDKP--VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWE 362

Query:   160 FKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
             FKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct:   363 FKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 413

GO:0051272 "positive regulation of cellular component movement" evidence=IEA

GO:0048870 "cell motility" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045786 "negative regulation of cell cycle" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0030578 "PML body organization" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P41156	ETS1_RAT	No assigned EC number	0.6990	0.4122	0.2131	yes	N/A
P29773	ETS2_LYTVA	No assigned EC number	0.9365	0.2763	0.5727	N/A	N/A
P27577	ETS1_MOUSE	No assigned EC number	0.6990	0.4122	0.2136	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	228
pfam00178	85	pfam00178, Ets, Ets-domain	6e-35
smart00413	87	smart00413, ETS, erythroblast transformation speci	3e-32

>gnl|CDD|143944 pfam00178, Ets, Ets-domain

 Score =  118 bits (299), Expect = 6e-35
 Identities = 46/62 (74%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 131 PIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
            IQLWQFLLELLTD+  + FI WTG D  EFKL DP+EVAR WGIRKNKP MNY+KLSR 
Sbjct: 1   QIQLWQFLLELLTDQDNRDFIRWTGRDKGEFKLVDPEEVARLWGIRKNKPNMNYDKLSRA 60

Query: 190 LR 191
           LR
Sbjct: 61  LR 62

Length = 85

>gnl|CDD|197710 smart00413, ETS, erythroblast transformation specific domain

 Score =  111 bits (281), Expect = 3e-32
 Identities = 42/62 (67%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 131 PIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
            IQLWQFLL+LL D      I WT  D  EFKL DP+EVAR WG RKNKP MNYEKLSR 
Sbjct: 1   GIQLWQFLLDLLLDPENSDIIKWTDRDEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRA 60

Query: 190 LR 191
           LR
Sbjct: 61  LR 62

variation of the helix-turn-helix motif. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG3806|consensus	177		99.97
smart00413	87	ETS erythroblast transformation specific domain. v	99.97
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	99.95
KOG3805|consensus	361		99.89
KOG3804|consensus	390		99.8
KOG3804|consensus	390		99.7
KOG3806|consensus	177		99.4
smart00413	87	ETS erythroblast transformation specific domain. v	99.39
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	99.15
KOG3805|consensus	361		99.1
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	95.56
smart00415	105	HSF heat shock factor.	95.06
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	88.16

>KOG3806|consensus

Probab=99.97  E-value=1.5e-31  Score=228.35  Aligned_cols=81  Identities=62%  Similarity=1.016  Sum_probs=72.5

Q ss_pred             CCCCCCCcchhHHHHHHhhCCCCCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhH
Q psy8490         124 PCFTGSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRF  202 (228)
Q Consensus       124 ~~~~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~p  202 (228)
                      ...+++|++||||||++||+|+++++||.||++ ++||+++||++|||+||++||||+||||||||||||||  .|. .+
T Consensus        61 ~s~~~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyyY--~kn-i~  137 (177)
T KOG3806|consen   61 ESTSGSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYYY--DKN-IL  137 (177)
T ss_pred             ccCCCCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHHH--hcC-ce
Confidence            444788899999999999999999999999996 66999999999999999999999999999999999996  454 46


Q ss_pred             HHHHH
Q psy8490         203 EKVAR  207 (228)
Q Consensus       203 EkVAR  207 (228)
                      +||..
T Consensus       138 ~Kv~G  142 (177)
T KOG3806|consen  138 KKVPG  142 (177)
T ss_pred             eecCC
Confidence            66653

>smart00413 ETS erythroblast transformation specific domain

Probab=99.97  E-value=2e-31  Score=205.48  Aligned_cols=73  Identities=62%  Similarity=0.963  Sum_probs=66.1

Q ss_pred             cchhHHHHHHhhCCCCCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         131 PIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       131 ~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      +++||+||++||.|+++++||+|||+ +|||+|+||++||++||.+||+++||||||||||||||   +...++||.
T Consensus         1 ~~~Lw~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy---~~~il~Kv~   74 (87)
T smart00413        1 QIQLWQFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY---KKNILRKVP   74 (87)
T ss_pred             CccHHHHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH---hcCcEEecC
Confidence            47999999999999999999999996 89999999999999999999999999999999999997   334455553

variation of the helix-turn-helix motif

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=99.95  E-value=5.4e-29  Score=190.53  Aligned_cols=64  Identities=63%  Similarity=1.059  Sum_probs=60.4

Q ss_pred             cchhHHHHHHhhCCCCCCCceeeec-CCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhccc
Q psy8490         131 PIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT  194 (228)
Q Consensus       131 ~i~LWqFLl~LL~d~~~~~~I~Wtg-~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYY  194 (228)
                      +++||+||++||.|++++++|+||| +++||+|+||++||++||.+||+++||||||||+||+||
T Consensus         1 ~~~Lw~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy   65 (85)
T PF00178_consen    1 QIQLWQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY   65 (85)
T ss_dssp             S-SHHHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence            5799999999999999999999999 689999999999999999999999999999999999997

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>KOG3805|consensus

Probab=99.89  E-value=7.9e-24  Score=194.27  Aligned_cols=68  Identities=46%  Similarity=0.782  Sum_probs=64.1

Q ss_pred             CCCcchhHHHHHHhhCCCC-CCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccc
Q psy8490         128 GSGPIQLWQFLLELLTDKT-CQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTG  195 (228)
Q Consensus       128 ~sG~i~LWqFLl~LL~d~~-~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG  195 (228)
                      ++.+|+|||||++||..+. +..||+|+|+ .|+|+|.+.+.||++||+||||+.||||||||+||.||+
T Consensus       269 ~kk~IhLwQFLkELL~sP~~~~~~IrWVDkdKGiFkiess~~lArlWG~RKNR~~MnYdKlsRslRqYyK  338 (361)
T KOG3805|consen  269 GKKKIHLWQFLKELLYSPEQMGSCIRWVDKDKGIFKIESSEKLARLWGIRKNRKAMNYDKLSRSLRQYYK  338 (361)
T ss_pred             CcceeeHHHHHHHHHhChhhhchheEeeccCCceEEeecHHHHHHHhhhhcccccccHHHHHHHHHHHhh
Confidence            3459999999999999986 9999999997 799999999999999999999999999999999999983

>KOG3804|consensus

Probab=99.80  E-value=2.2e-20  Score=175.72  Aligned_cols=71  Identities=41%  Similarity=0.743  Sum_probs=62.9

Q ss_pred             hhHHHHHHhhCCCCC-CCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         133 QLWQFLLELLTDKTC-QAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       133 ~LWqFLl~LL~d~~~-~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      .||+||+.||.|+++ ..+|+|+++ .|+|||||+++|||+||.+||+.+||||||||||||||   |....++|-
T Consensus       295 ~LWefl~~lL~d~~~~p~~IkWedr~~GVFrvVds~a~arlWG~~Kn~~~MtYekmsRAlRyYY---k~~IL~kv~  367 (390)
T KOG3804|consen  295 GLWEFLRQLLLDPNYNPGFIKWEDREKGVFRVVDSEALARLWGMHKNNSSMTYEKMSRALRYYY---KREILRKVD  367 (390)
T ss_pred             hHHHHHHHHhcCCCcCCccccccccCCCeeEEecccHHHHHhcCcCCCCCcCHHHHhHHhhhhh---hcceeecCC
Confidence            899999999999865 559999997 79999999999999999999999999999999999998   444444443

>KOG3804|consensus

Probab=99.70  E-value=2.9e-18  Score=161.52  Aligned_cols=98  Identities=46%  Similarity=0.795  Sum_probs=90.9

Q ss_pred             cchhHHHHHHhhCCC-CCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccc-------------
Q psy8490         131 PIQLWQFLLELLTDK-TCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTG-------------  195 (228)
Q Consensus       131 ~i~LWqFLl~LL~d~-~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG-------------  195 (228)
                      ...+|+|++.++.|. .+...|.|+.. .+.|+.+|...+..+||+++|++.|+|+.|+|++||||-             
T Consensus       171 tp~~~~~l~~~~q~~~~~p~~~~~~~~~~~~~~~~~s~~~s~~~~a~sn~~~m~~~~m~~a~~~~~q~~il~~~~~~~~~  250 (390)
T KOG3804|consen  171 TPYLWEFLLDLLQDSATCPKPIKWTQREKGCFKLVDSKAVSKLWGAHSNKPDMNYETMGRALRYYPQRGILAKVEGVLQR  250 (390)
T ss_pred             CcchHHHHhhhhhcccCCCcccccccccccccccccCccccccchhhccCccccccccccccccccCCccccccchhhhh
Confidence            569999999999986 79999999995 799999999999999999999999999999999988753             


Q ss_pred             ------------------------------------------------------------------------hhhhhhHH
Q psy8490         196 ------------------------------------------------------------------------YEKASRFE  203 (228)
Q Consensus       196 ------------------------------------------------------------------------~~K~~~pE  203 (228)
                                                                                              +||+++++
T Consensus       251 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LWefl~~lL~d~~~~p~~IkWedr~~GVFrvVds~  330 (390)
T KOG3804|consen  251 SCHQNKGSQQQPQVQDKRGRPSSALPVPPPLDTVKKSGRPLSGTGLWEFLRQLLLDPNYNPGFIKWEDREKGVFRVVDSE  330 (390)
T ss_pred             hcccCCCccccccccccccCcCccccCCCccccccccCCCcccchHHHHHHHHhcCCCcCCccccccccCCCeeEEeccc
Confidence                                                                                    36679999


Q ss_pred             HHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         204 KVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       204 kVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      .|||+||++||+++|||||||||||
T Consensus       331 a~arlWG~~Kn~~~MtYekmsRAlR  355 (390)
T KOG3804|consen  331 ALARLWGMHKNNSSMTYEKMSRALR  355 (390)
T ss_pred             HHHHHhcCcCCCCCcCHHHHhHHhh
Confidence            9999999999999999999999997

>KOG3806|consensus

Probab=99.40  E-value=4.8e-14  Score=121.11  Aligned_cols=34  Identities=59%  Similarity=0.816  Sum_probs=32.8

Q ss_pred             chhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       195 G~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      ++||+++||+|||+||++||+|+|||||||||||
T Consensus        96 ~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLR  129 (177)
T KOG3806|consen   96 LEFKLVDPDEVARLWGARKNKPNMNYDKLSRALR  129 (177)
T ss_pred             ceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHH
Confidence            3899999999999999999999999999999997

>smart00413 ETS erythroblast transformation specific domain

Probab=99.39  E-value=6.6e-14  Score=108.44  Aligned_cols=35  Identities=66%  Similarity=0.894  Sum_probs=33.6

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|+||++++|+||++||.+||+|+|||||||||||
T Consensus        28 ~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLR   62 (87)
T smart00413       28 GGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALR   62 (87)
T ss_pred             CCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHH
Confidence            47899999999999999999999999999999997

variation of the helix-turn-helix motif

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=99.15  E-value=6.7e-12  Score=96.36  Aligned_cols=35  Identities=60%  Similarity=0.837  Sum_probs=32.3

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      .|+||++++++||++||++||+++|||||||||||
T Consensus        28 ~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR   62 (85)
T PF00178_consen   28 GGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALR   62 (85)
T ss_dssp             TTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHH
T ss_pred             CCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence            46899999999999999999999999999999997

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>KOG3805|consensus

Probab=99.10  E-value=1.6e-11  Score=113.72  Aligned_cols=43  Identities=51%  Similarity=0.795  Sum_probs=37.3

Q ss_pred             HHhhhhc---ccchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         186 LSRGLRR---KTGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       186 mSRaLRy---YYG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      |++++|-   =-|.||+++.++|||+|||+|||++|||||||||||
T Consensus       289 ~~~~IrWVDkdKGiFkiess~~lArlWG~RKNR~~MnYdKlsRslR  334 (361)
T KOG3805|consen  289 MGSCIRWVDKDKGIFKIESSEKLARLWGIRKNRKAMNYDKLSRSLR  334 (361)
T ss_pred             hchheEeeccCCceEEeecHHHHHHHhhhhcccccccHHHHHHHHH
Confidence            4444443   368999999999999999999999999999999997

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=95.56  E-value=0.019  Score=44.35  Aligned_cols=56  Identities=27%  Similarity=0.408  Sum_probs=40.2

Q ss_pred             HHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcc
Q psy8490         137 FLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRK  193 (228)
Q Consensus       137 FLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyY  193 (228)
                      =|.++|+|+.+.++|+|.+++..|.|.|++++++.-=.+-= ..-+|..+.|-|-.|
T Consensus         5 kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F-~~~~~~SF~RQLn~y   60 (103)
T PF00447_consen    5 KLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYF-KHSNFSSFVRQLNMY   60 (103)
T ss_dssp             HHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHS-ST--HHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhcccccc-CccccceeeeEeeee
Confidence            35688899999999999999999999999888762211110 112688888888887

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=95.06  E-value=0.068  Score=41.75  Aligned_cols=56  Identities=29%  Similarity=0.399  Sum_probs=42.0

Q ss_pred             HHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcc
Q psy8490         137 FLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRK  193 (228)
Q Consensus       137 FLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyY  193 (228)
                      =|.++|+|+.+.++|+|...+..|.|.|+++..+---.+- =..-+|..+-|-|-.|
T Consensus         8 kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~-Fk~~~~~SF~RqLn~y   63 (105)
T smart00415        8 KLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRY-FKHNNFSSFVRQLNMY   63 (105)
T ss_pred             HHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHh-cCCCCHHHHHHHHHhc
Confidence            3567889999999999999999999999987765322221 1122588999998886

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=88.16  E-value=0.44  Score=44.21  Aligned_cols=50  Identities=28%  Similarity=0.617  Sum_probs=36.7

Q ss_pred             HHHhhCCCCCCCceeeecCCceEEEcChHHHHH----HHhhhcCCCCchHHHHHhhhhc
Q psy8490         138 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVAR----RWGIRKNKPKMNYEKLSRGLRR  192 (228)
Q Consensus       138 Ll~LL~d~~~~~~I~Wtg~~geFrlvdpe~VAr----lWG~~Knk~~MtYeKmSRaLRy  192 (228)
                      |.++|+|+++.+.|+|+.++.-|-|.|+++.+.    +.+.|.     |+..+-|-|-.
T Consensus        17 Ly~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~-----NfaSFVRQLN~   70 (282)
T COG5169          17 LYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHG-----NFASFVRQLNK   70 (282)
T ss_pred             HHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhccc-----CHHHHHHHHHh
Confidence            446778999999999999999999999887664    444444     34555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
1mdm_B	161	Inhibited Fragment Of Ets-1 And Paired Domain Of Pa		2e-34
1r36_A	140	Nmr-Based Structure Of Autoinhibited Murine Ets-1 D		2e-34
3mfk_A	162	Ets1 Complex With Stromelysin-1 Promoter Dna Length		2e-34
3ri4_A	163	Ets1 Cooperative Binding To Widely Separated Sites		3e-34
1gvj_A	146	Ets-1 Dna Binding And Autoinhibitory Domains Length		3e-34
1md0_A	141	Crystal Structure Of An Inhibited Fragment Of Ets-1		4e-34
2stt_A	96	Solution Nmr Structure Of The Human Ets1DNA COMPLEX		8e-34
2nny_A	171	Crystal Structure Of The Ets1 Dimer Dna Complex. Le		1e-33
1k78_B	110	Pax5(1-149)+ets-1(331-440)+dna Length = 110		1e-31
2ypr_A	102	Crystal Structure Of The Dna Binding Ets Domain Of		5e-21
1fli_A	98	Dna-Binding Domain Of Fli-1 Length = 98		7e-21
4avp_A	106	Crystal Structure Of The Dna-Binding Domain Of Huma		4e-20
1awc_A	110	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-18
1dux_C	94	Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM		3e-15
1yo5_C	97	Analysis Of The 2.0a Crystal Structure Of The Prote		4e-12
1hbx_G	157	Ternary Complex Of Sap-1 And Srf With Specific Sre		3e-10
1hbx_G	157	Ternary Complex Of Sap-1 And Srf With Specific Sre		3e-06
1bc7_C	93	Serum Response Factor Accessory Protein 1a (Sap-1)D		3e-10
1bc7_C	93	Serum Response Factor Accessory Protein 1a (Sap-1)D		4e-06
2dao_A	118	Solution Structure Of Ets Domain Transcriptional Fa		1e-08
2lf7_A	106	Intramolecular Regulation Of The Ets Domain Within		2e-08
2lf8_A	128	Intramolecular Regulation Of The Ets Domain Within		2e-08
1pue_E	89	Pu.1 Ets Domain-Dna Complex Length = 89		5e-06
1wwx_A	107	Solution Structure Of The Ets-Domain Of The Ets Dom		1e-04

>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5 Bound To Dna Length = 161

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 80/103 (77%), Gaps = 9/103 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 41  VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 93
Query: 170 RRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           RRWG RKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 94  RRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 134

>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1 Deltan301 Length = 140

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/82 (82%), Positives = 72/82 (87%), Gaps = 7/82 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 20  VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 72
Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
           RRWG RKNKPKMNYEKLSRGLR
Sbjct: 73  RRWGKRKNKPKMNYEKLSRGLR 94

>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna Length = 162

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/82 (82%), Positives = 72/82 (87%), Gaps = 7/82 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 41  VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 93
Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
           RRWG RKNKPKMNYEKLSRGLR
Sbjct: 94  RRWGKRKNKPKMNYEKLSRGLR 115

>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On Promoter Dna Length = 163

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 80/103 (77%), Gaps = 9/103 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 42  VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 94
Query: 170 RRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
           RRWG RKNKPKMNYEKLSRGLR    Y+K    +   +R+  R
Sbjct: 95  RRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 135

>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains Length = 146

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/82 (82%), Positives = 72/82 (87%), Gaps = 7/82 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 25  VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 77
Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
           RRWG RKNKPKMNYEKLSRGLR
Sbjct: 78  RRWGKRKNKPKMNYEKLSRGLR 99

>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1 Length = 141

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/82 (82%), Positives = 72/82 (87%), Gaps = 7/82 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 21  VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 73
Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
           RRWG RKNKPKMNYEKLSRGLR
Sbjct: 74  RRWGKRKNKPKMNYEKLSRGLR 95

>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25 Structures Length = 96

Iteration: 1
 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 67/80 (83%), Positives = 71/80 (88%), Gaps = 7/80 (8%)
Query: 112 PASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARR 171
           PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVARR
Sbjct: 3   PAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARR 55
Query: 172 WGIRKNKPKMNYEKLSRGLR 191
           WG RKNKPKMNYEKLSRGLR
Sbjct: 56  WGKRKNKPKMNYEKLSRGLR 75

>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex. Length = 171

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/82 (81%), Positives = 71/82 (86%), Gaps = 7/82 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
           V PA+ LAGY       TGSGPIQLWQFLLELLTDK+ Q+FISWTGDGWEFKL+DPDEVA
Sbjct: 50  VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVA 102
Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
           RRWG RKNKPKMNYEKLSRGLR
Sbjct: 103 RRWGKRKNKPKMNYEKLSRGLR 124

>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna Length = 110

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/64 (93%), Positives = 63/64 (98%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
           GSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLS
Sbjct: 1   GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLS 60
Query: 188 RGLR 191
           RGLR
Sbjct: 61  RGLR 64

>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human Protein Fev Length = 102

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 50/64 (78%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
           GSG IQLWQFLLELL D+     I+W G   EFKLTDPDEVARRWG RK+KP MNY+KLS
Sbjct: 4   GSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLS 63
Query: 188 RGLR 191
           R LR
Sbjct: 64  RALR 67

>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1 Length = 98

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 51/64 (79%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
           GSG IQLWQFLLELL+D    + I+W G   EFK+TDPDEVARRWG RK+KP MNY+KLS
Sbjct: 2   GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61
Query: 188 RGLR 191
           R LR
Sbjct: 62  RALR 65

>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1. Length = 106

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 52/69 (75%)
Query: 123 GPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN 182
           GP     G +QLWQFL+ LL D +   FI+WTG G EFKL +P+EVARRWGI+KN+P MN
Sbjct: 3   GPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMN 62
Query: 183 YEKLSRGLR 191
           Y+KLSR LR
Sbjct: 63  YDKLSRSLR 71

>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 110

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 47/60 (78%)
Query: 132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
           IQLWQFLLELLTDK  +  ISW GD  EFKL  P+ VA++WG RKNKP MNYEKLSR LR
Sbjct: 1   IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60

>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA- Binding Surface Affect Dna-Recognition Length = 94

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 131 PIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
            + LWQFLL+LL ++     ISWT  DG EFKL D +EVAR WG+RKNK  MNY+KLSR 
Sbjct: 4   SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 63
Query: 190 LR 191
           LR
Sbjct: 64  LR 65

>pdb|1YO5|C Chain C, Analysis Of The 2.0a Crystal Structure Of The Protein-Dna Complex Of Human Pdef Ets Domain Bound To The Prostate Specific Antigen Regulatory Site Length = 97

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 128 GSGPIQLWQFLLELLTD-KTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEK 185
           GS PI LWQFL ELL    +   FI W   +   FK+ D  +VAR WGIRKN+P MNY+K
Sbjct: 7   GSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDK 66
Query: 186 LSRGLRR 192
           LSR +R+
Sbjct: 67  LSRSIRQ 73

>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna Length = 157

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 148 QAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
           +  I WT +  +FKL   +EVAR WGIRKNKP MNY+KLSR LR
Sbjct: 22  KHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 65

>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna Length = 157

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228
           G  K  + E+VAR WGIRKNKP MNY+KLSR LR
Sbjct: 32  GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 65

>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA Complex Length = 93

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 148 QAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
           +  I WT +  +FKL   +EVAR WGIRKNKP MNY+KLSR LR
Sbjct: 21  KHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 64

>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA Complex Length = 93

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228
           G  K  + E+VAR WGIRKNKP MNY+KLSR LR
Sbjct: 31  GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 64

>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor Etv6 Protein Length = 118

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 118 GYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRK 176
           G SGS  C        LW ++ +LL+D   + FI W   +   F++ DP+ +AR WG  K
Sbjct: 1   GSSGSSGCRL------LWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHK 54
Query: 177 NKPKMNYEKLSRGLR 191
           N+  M YEK+SR LR
Sbjct: 55  NRTNMTYEKMSRALR 69

>pdb|2LF7|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6 Sequence R335 To Q436 Length = 106

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 186
           GS    LW ++ +LL+D   + FI W   +   F++ DP+ +AR WG  KN+  M YEK+
Sbjct: 1   GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 187 SRGLR 191
           SR LR
Sbjct: 61  SRALR 65

>pdb|2LF8|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6 Sequence R335 To R458 Length = 128

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 186
           GS    LW ++ +LL+D   + FI W   +   F++ DP+ +AR WG  KN+  M YEK+
Sbjct: 1   GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 187 SRGLR 191
           SR LR
Sbjct: 61  SRALR 65

>pdb|1PUE|E Chain E, Pu.1 Ets Domain-Dna Complex Length = 89

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 131 PIQLWQFLLELLTDKTCQAFISWTGDG---WEFKLTDPDEVARRWGIRK-NKPKMNYEKL 186
            I+L+QFLL+LL     +  I W       ++F     + +A RWGI+K N+ KM YEK+
Sbjct: 1   KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60
Query: 187 SRGLRRKTGYEKASRFEKVARR 208
           +R LR    Y K    +KV ++
Sbjct: 61  ARALR---NYGKTGEVKKVKKK 79

>pdb|1WWX|A Chain A, Solution Structure Of The Ets-Domain Of The Ets Domain Transcription Factor Length = 107

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 133 QLWQFLLELLT--DKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
            LW+F+ +LL   ++ C   + W   +   F++   + +A+ WG RK   +M YEKLSR 
Sbjct: 10  HLWEFVRDLLLSPEENC-GILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRA 68
Query: 190 LRRKTGYEKASRFEKVARR 208
           LR    Y K    E+V RR
Sbjct: 69  LRY---YYKTGILERVDRR 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	1e-27
1awc_A	110	Protein (GA binding protein alpha); complex (trans	6e-27
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	1e-26
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	1e-26
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	7e-26
1yo5_C	97	SAM pointed domain containing ETS transcription fa	2e-25
2lf8_A	128	Transcription factor ETV6; auto-inhibition; NMR {M	2e-25
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	2e-25
4avp_A	106	ETS translocation variant 1; transcription, transc	6e-25
2dao_A	118	Transcription factor ETV6; ETS domain, structural	1e-24
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	1e-24
1pue_E	89	Protein (transcription factor PU.1 (TF PU.1)); com	1e-23
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	2e-22

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21 Length = 98

 Score =  100 bits (249), Expect = 1e-27
 Identities = 48/81 (59%), Positives = 56/81 (69%), Gaps = 3/81 (3%)

Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
           GSG IQLWQFLLELL+D    + I+W G   EFK+TDPDEVARRWG RK+KP MNY+KLS
Sbjct: 2   GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61

Query: 188 RGLRRKTGYEKASRFEKVARR 208
           R LR    Y   +   KV  +
Sbjct: 62  RALRY---YYDKNIMTKVHGK 79

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21 Length = 110

 Score = 99.1 bits (246), Expect = 6e-27
 Identities = 46/77 (59%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
           IQLWQFLLELLTDK  +  ISW GD  EFKL  P+ VA++WG RKNKP MNYEKLSR LR
Sbjct: 1   IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60

Query: 192 RKTGYEKASRFEKVARR 208
               Y       KV  +
Sbjct: 61  Y---YYDGDMICKVQGK 74

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C* Length = 93

 Score = 97.8 bits (243), Expect = 1e-26
 Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 130 GPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
             I LWQFLL+LL     +  I WT +  +FKL   +EVAR WGIRKNKP MNY+KLSR 
Sbjct: 3   SAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRA 62

Query: 190 LRRKTGYEKASRFEKVARR 208
           LR    Y   +  +KV  +
Sbjct: 63  LRY---YYVKNIIKKVNGQ 78

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B Length = 171

 Score =   99 bits (248), Expect = 1e-26
 Identities = 68/134 (50%), Positives = 82/134 (61%), Gaps = 6/134 (4%)

Query: 76  PPAWPSPDVQFLPTGR-GEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQL 134
            P++ S D +  P       P   +  +   +             + +   +TGSGPIQL
Sbjct: 10  VPSYDSFDSEDYPAALPNHKPKGTFKDYVRDRADL--NKDKPVIPAAALAGYTGSGPIQL 67

Query: 135 WQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT 194
           WQFLLELLTDK+ Q+FISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLR   
Sbjct: 68  WQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRY-- 125

Query: 195 GYEKASRFEKVARR 208
            Y   +   K A +
Sbjct: 126 -YYDKNIIHKTAGK 138

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A* Length = 146

 Score = 97.2 bits (241), Expect = 7e-26
 Identities = 67/109 (61%), Positives = 77/109 (70%), Gaps = 8/109 (7%)

Query: 105 SKPPYVQPASMLAGYS-----GSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWE 159
           +   YV+  + L          +   +TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWE
Sbjct: 8   TFKDYVRDRADLNKDKPVIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWE 67

Query: 160 FKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARR 208
           FKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    Y   +   K A +
Sbjct: 68  FKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRY---YYDKNIIHKTAGK 113

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 Length = 97

 Score = 94.7 bits (235), Expect = 2e-25
 Identities = 39/81 (48%), Positives = 47/81 (58%), Gaps = 5/81 (6%)

Query: 127 TGSGPIQLWQFLLELLTDK-TCQAFISWT-GDGWEFKLTDPDEVARRWGIRKNKPKMNYE 184
            GS PI LWQFL ELL    +   FI W   +   FK+ D  +VAR WGIRKN+P MNY+
Sbjct: 6   LGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYD 65

Query: 185 KLSRGLRRKTGYEKASRFEKV 205
           KLSR +R+   Y K     K 
Sbjct: 66  KLSRSIRQ---YYKKGIIRKP 83

>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus} Length = 128

 Score = 95.6 bits (237), Expect = 2e-25
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 186
           GS    LW ++ +LL+D   + FI W   +   F++ DP+ +AR WG  KN+  M YEK+
Sbjct: 1   GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60

Query: 187 SRGLRRKTGYEKASRFEKVARR 208
           SR LR    Y K +   K   +
Sbjct: 61  SRALRH---YYKLNIIRKEPGQ 79

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21 Length = 157

 Score = 96.8 bits (240), Expect = 2e-25
 Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
               I LWQFLL+LL     +  I WT +  +FKL   +EVAR WGIRKNKP MNY+KLS
Sbjct: 2   SDSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLS 61

Query: 188 RGLRRKTGYEKASRFEKVARR 208
           R LR    Y   +  +KV  +
Sbjct: 62  RALRY---YYVKNIIKKVNGQ 79

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} Length = 106

 Score = 93.7 bits (232), Expect = 6e-25
 Identities = 47/86 (54%), Positives = 58/86 (67%), Gaps = 3/86 (3%)

Query: 123 GPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN 182
           GP     G +QLWQFL+ LL D +   FI+WTG G EFKL +P+EVARRWGI+KN+P MN
Sbjct: 3   GPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMN 62

Query: 183 YEKLSRGLRRKTGYEKASRFEKVARR 208
           Y+KLSR LR    Y +    +KVA  
Sbjct: 63  YDKLSRSLRY---YYEKGIMQKVAGE 85

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 93.3 bits (231), Expect = 1e-24
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 186
            SG   LW ++ +LL+D   + FI W   +   F++ DP+ +AR WG  KN+  M YEK+
Sbjct: 5   SSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 64

Query: 187 SRGLRRKTGYEKASRFEKVARR 208
           SR LR    Y K +   K   +
Sbjct: 65  SRALRH---YYKLNIIRKEPGQ 83

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21 Length = 107

 Score = 92.8 bits (230), Expect = 1e-24
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 128 GSGPIQLWQFLLELLTDK-TCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEK 185
            SG   LW+F+ +LL         + W   +   F++   + +A+ WG RK   +M YEK
Sbjct: 5   SSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEK 64

Query: 186 LSRGLRRKTGYEKASRFEKVARR 208
           LSR LR    Y K    E+V RR
Sbjct: 65  LSRALRY---YYKTGILERVDRR 84

>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21 Length = 89

 Score = 89.7 bits (222), Expect = 1e-23
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 7/81 (8%)

Query: 132 IQLWQFLLELLTDKTCQAFISWTGDG---WEFKLTDPDEVARRWGIRK-NKPKMNYEKLS 187
           I+L+QFLL+LL     +  I W       ++F     + +A RWGI+K N+ KM YEK++
Sbjct: 2   IRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMA 61

Query: 188 RGLRRKTGYEKASRFEKVARR 208
           R LR    Y K    +KV ++
Sbjct: 62  RALRN---YGKTGEVKKVKKK 79

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} Length = 103

 Score = 87.0 bits (215), Expect = 2e-22
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 132 IQLWQFLLELLTDK-TCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
             LW+F+ ++L      +  + W       FK    + VA+ WG +K    M YEKLSR 
Sbjct: 5   THLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRA 64

Query: 190 LRRKTGYEKASRFEKVARR 208
           +R    Y K    E+V  R
Sbjct: 65  MRY---YYKREILERVDGR 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	99.97
4avp_A	106	ETS translocation variant 1; transcription, transc	99.97
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	99.97
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	99.97
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	99.97
1yo5_C	97	SAM pointed domain containing ETS transcription fa	99.96
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	99.96
1awc_A	110	Protein (GA binding protein alpha); complex (trans	99.96
1pue_E	89	Protein (transcription factor PU.1 (TF PU.1)); com	99.96
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	99.96
2dao_A	118	Transcription factor ETV6; ETS domain, structural	99.96
2lf8_A	128	Transcription factor ETV6; auto-inhibition; NMR {M	99.92
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	99.95
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	99.95
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	99.39
1yo5_C	97	SAM pointed domain containing ETS transcription fa	99.38
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	99.37
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	99.36
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	99.34
2dao_A	118	Transcription factor ETV6; ETS domain, structural	99.34
1awc_A	110	Protein (GA binding protein alpha); complex (trans	99.33
1pue_E	89	Protein (transcription factor PU.1 (TF PU.1)); com	99.3
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	99.3
2lf8_A	128	Transcription factor ETV6; auto-inhibition; NMR {M	98.96
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	99.27
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	99.26
4avp_A	106	ETS translocation variant 1; transcription, transc	99.25
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	99.23
2ldu_A	125	Heat shock factor protein 1; structural genomics,	94.46
3hts_B	102	Heat shock transcription factor; transcription reg	93.59
1hks_A	106	Heat-shock transcription factor; transcription reg	92.66

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=99.97  E-value=3.5e-33  Score=218.17  Aligned_cols=82  Identities=57%  Similarity=0.926  Sum_probs=73.8

Q ss_pred             CCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         127 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       127 ~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      +++|+++|||||++||+|+++.+||+|+|++|||+++||++||++||.+|||++||||||||||||||   +...++||.
T Consensus         1 ~gsg~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY---~k~i~~Kv~   77 (98)
T 1fli_A            1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY---DKNIMTKVH   77 (98)
T ss_dssp             CCCSSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH---HTTSCCCBG
T ss_pred             CCCCceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH---HcCcEeecC
Confidence            47899999999999999999999999999999999999999999999999999999999999999997   344567776


Q ss_pred             HHhhh
Q psy8490         207 RRWGI  211 (228)
Q Consensus       207 R~WGi  211 (228)
                      .....
T Consensus        78 gkr~v   82 (98)
T 1fli_A           78 GKRYA   82 (98)
T ss_dssp             GGSSB
T ss_pred             CCeEE
Confidence            54443

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=99.97  E-value=1.9e-32  Score=216.55  Aligned_cols=81  Identities=57%  Similarity=1.016  Sum_probs=67.0

Q ss_pred             CCCCCCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhH
Q psy8490         123 GPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRF  202 (228)
Q Consensus       123 g~~~~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~p  202 (228)
                      |+++.++|+++|||||++||+|+++++||+|+|++++|+++||++||++||++||+++||||||||||||||   +...+
T Consensus         3 ~~~~~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY---~kgii   79 (106)
T 4avp_A            3 GPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYY---EKGIM   79 (106)
T ss_dssp             --------CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHH---HHTSE
T ss_pred             CCCCCCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH---hcCeE
Confidence            678899999999999999999999999999999999999999999999999999999999999999999997   33334


Q ss_pred             HHHH
Q psy8490         203 EKVA  206 (228)
Q Consensus       203 EkVA  206 (228)
                      +||+
T Consensus        80 ~Kv~   83 (106)
T 4avp_A           80 QKVA   83 (106)
T ss_dssp             EECT
T ss_pred             EecC
Confidence            4444

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=99.97  E-value=3.5e-32  Score=210.80  Aligned_cols=74  Identities=51%  Similarity=0.854  Sum_probs=67.9

Q ss_pred             CcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         130 GPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       130 G~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      |+++|||||++||.|+++.+||+|+|++|+|+++||++||++||.+||+++||||||||||||||   +...++||.
T Consensus         3 ~~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY---~~~il~Kv~   76 (93)
T 1bc8_C            3 SAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYY---VKNIIKKVN   76 (93)
T ss_dssp             CCCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH---HHTSEEECT
T ss_pred             CcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH---hcCcEEecC
Confidence            78999999999999999999999999999999999999999999999999999999999999997   334455554

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=99.97  E-value=5e-32  Score=212.88  Aligned_cols=68  Identities=68%  Similarity=1.112  Sum_probs=66.4

Q ss_pred             CCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhccc
Q psy8490         127 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT  194 (228)
Q Consensus       127 ~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYY  194 (228)
                      +++|+++|||||++||+|+++.+||+|+++.|+|+++||++||++||++|||++||||||||||||||
T Consensus         3 ~g~g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY   70 (102)
T 2ypr_A            3 KGSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   70 (102)
T ss_dssp             CCCSSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHH
T ss_pred             CCCCcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999997

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=99.97  E-value=8.1e-32  Score=213.33  Aligned_cols=77  Identities=34%  Similarity=0.640  Sum_probs=68.5

Q ss_pred             CCCCcchhHHHHHHhhCCCC-CCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHH
Q psy8490         127 TGSGPIQLWQFLLELLTDKT-CQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEK  204 (228)
Q Consensus       127 ~~sG~i~LWqFLl~LL~d~~-~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEk  204 (228)
                      +++|+++|||||++||.|++ +.+||+|+|+ .|+|+|+||++||++||.+|||++||||||||||||||   +...++|
T Consensus         4 g~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY---~~~ii~K   80 (107)
T 1wwx_A            4 GSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY---KTGILER   80 (107)
T ss_dssp             CCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH---HHTSEEC
T ss_pred             CCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH---hcCcEEe
Confidence            57899999999999999874 7899999996 79999999999999999999999999999999999997   3333444


Q ss_pred             HH
Q psy8490         205 VA  206 (228)
Q Consensus       205 VA  206 (228)
                      |.
T Consensus        81 v~   82 (107)
T 1wwx_A           81 VD   82 (107)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21

Probab=99.96  E-value=1.5e-31  Score=208.59  Aligned_cols=68  Identities=53%  Similarity=0.920  Sum_probs=62.6

Q ss_pred             CCCCcchhHHHHHHhhCCC-CCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhccc
Q psy8490         127 TGSGPIQLWQFLLELLTDK-TCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT  194 (228)
Q Consensus       127 ~~sG~i~LWqFLl~LL~d~-~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYY  194 (228)
                      .++++++|||||++||.|+ ++.+||+|+|+ +|+|+++||++||++||.+||+++||||||||||||||
T Consensus         6 ~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY   75 (97)
T 1yo5_C            6 LGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYY   75 (97)
T ss_dssp             ---CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTT
T ss_pred             CCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence            5678999999999999997 57999999986 89999999999999999999999999999999999997

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=99.96  E-value=5.4e-31  Score=218.12  Aligned_cols=77  Identities=82%  Similarity=1.371  Sum_probs=70.3

Q ss_pred             CCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         127 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       127 ~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      +++|+++|||||++||.|++|.+||+|+|+++||+++||++||++||.+||+++||||||||||||||   +...++||.
T Consensus        35 ~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY---~k~ii~Kv~  111 (146)
T 1gvj_A           35 TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYY---DKNIIHKTA  111 (146)
T ss_dssp             HTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH---HTTSEEECT
T ss_pred             CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH---hcCcEEecC
Confidence            57899999999999999999999999999999999999999999999999999999999999999997   333455554

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=99.96  E-value=9.6e-31  Score=208.05  Aligned_cols=72  Identities=63%  Similarity=0.980  Sum_probs=65.8

Q ss_pred             chhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       132 i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      |+|||||++||.|+++.+||+|+|++|+|+++||++||++||.+||+++||||||||||||||   +...+++|.
T Consensus         1 i~LwqFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY---~k~ii~Kv~   72 (110)
T 1awc_A            1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY---DGDMICKVQ   72 (110)
T ss_dssp             CCHHHHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG---GSSSEEECT
T ss_pred             CcHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH---hcCCEeecc
Confidence            689999999999999999999999999999999999999999999999999999999999997   333445554

>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21

Probab=99.96  E-value=7e-31  Score=202.03  Aligned_cols=64  Identities=41%  Similarity=0.757  Sum_probs=61.0

Q ss_pred             cchhHHHHHHhhCCCCCCCceeeecC-CceEEEc--ChHHHHHHHhhhc-CCCCchHHHHHhhhhccc
Q psy8490         131 PIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT--DPDEVARRWGIRK-NKPKMNYEKLSRGLRRKT  194 (228)
Q Consensus       131 ~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlv--dpe~VArlWG~~K-nk~~MtYeKmSRaLRyYY  194 (228)
                      +++|||||++||.|+++.+||+|||+ .|+|+++  ||++||++||.+| |+++||||||||||||||
T Consensus         1 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY   68 (89)
T 1pue_E            1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYG   68 (89)
T ss_dssp             CCCHHHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHH
Confidence            47999999999999999999999996 6999997  8999999999999 899999999999999997

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=99.96  E-value=1.4e-30  Score=220.07  Aligned_cols=79  Identities=78%  Similarity=1.295  Sum_probs=71.5

Q ss_pred             CCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         127 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       127 ~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      .++|+++|||||++||.|+++.+||+|+|+++||+++||++||++||++|||++||||||||||||||   +...++||.
T Consensus        60 ~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY---~k~ii~Kv~  136 (171)
T 2nny_A           60 TGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYY---DKNIIHKTA  136 (171)
T ss_dssp             HTCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG---TTTSEEECT
T ss_pred             CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH---hcCcEeecC
Confidence            57899999999999999999999999999999999999999999999999999999999999999997   333455655


Q ss_pred             HH
Q psy8490         207 RR  208 (228)
Q Consensus       207 R~  208 (228)
                      ..
T Consensus       137 Gk  138 (171)
T 2nny_A          137 GK  138 (171)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.96  E-value=1.1e-30  Score=209.90  Aligned_cols=76  Identities=38%  Similarity=0.724  Sum_probs=68.5

Q ss_pred             CCCcchhHHHHHHhhCCCCCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         128 GSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       128 ~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      -+|+++|||||++||.|+++.+||+|+|+ .++|+|+||++||++||.+|||++||||||||||||||   +...++||.
T Consensus         5 ~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY---~k~ii~Kv~   81 (118)
T 2dao_A            5 SSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYY---KLNIIRKEP   81 (118)
T ss_dssp             CCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH---HHTSEECCS
T ss_pred             cCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH---hcCCEEecc
Confidence            45789999999999999999999999997 58999999999999999999999999999999999997   333455554

>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}

Probab=99.92  E-value=9.8e-31  Score=212.50  Aligned_cols=81  Identities=36%  Similarity=0.664  Sum_probs=73.5

Q ss_pred             CCCcchhHHHHHHhhCCCCCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         128 GSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       128 ~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      |+|.++|||||++||.|+++.+||+|+|+ .|+|+|+||++||++||.+|||++||||||||||||||   +...++||.
T Consensus         1 ~s~~~~LWqFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY---~k~Ii~Kv~   77 (128)
T 2lf8_A            1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYY---KLNIIRKEP   77 (128)
Confidence            57899999999999999999999999997 58999999999999999999999999999999999997   455688887


Q ss_pred             HHhhh
Q psy8490         207 RRWGI  211 (228)
Q Consensus       207 R~WGi  211 (228)
                      .....
T Consensus        78 Gqrlv   82 (128)
T 2lf8_A           78 GQRLL   82 (128)
Confidence            55444

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=99.95  E-value=3.1e-30  Score=215.37  Aligned_cols=76  Identities=50%  Similarity=0.830  Sum_probs=69.3

Q ss_pred             CCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHHH
Q psy8490         129 SGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVAR  207 (228)
Q Consensus       129 sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVAR  207 (228)
                      .|+++|||||++||.|+++.+||+|+|+.|+|+++||++||++||.+|||++||||||||||||||   +...++||..
T Consensus         3 ~~~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY---~k~Ii~KV~G   78 (157)
T 1hbx_G            3 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYY---VKNIIKKVNG   78 (157)
T ss_dssp             CCCCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHH---HTTSEEECSS
T ss_pred             CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHH---hcCcEEecCC
Confidence            378999999999999999999999999999999999999999999999999999999999999997   3444566653

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=99.95  E-value=2.6e-29  Score=197.66  Aligned_cols=73  Identities=32%  Similarity=0.632  Sum_probs=65.1

Q ss_pred             cchhHHHHHHhhCCCC-CCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         131 PIQLWQFLLELLTDKT-CQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       131 ~i~LWqFLl~LL~d~~-~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      .++|||||++||.|++ +.+||+|+|+ .|+|+|+||++||++||++|||++||||||||||||||   +...++||+
T Consensus         4 ~~~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy---~~~ii~Kv~   78 (103)
T 3jtg_A            4 GTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYY---KREILERVD   78 (103)
T ss_dssp             CCSHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHH---HTTSBCCCT
T ss_pred             cccHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH---hcCcEEecC
Confidence            4599999999999986 8899999996 79999999999999999999999999999999999997   334455554

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=99.39  E-value=3.5e-14  Score=110.88  Aligned_cols=35  Identities=60%  Similarity=0.951  Sum_probs=33.6

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|+||++++|+|||+||++||+|+|||||||||||
T Consensus        31 ~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLR   65 (98)
T 1fli_A           31 NGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALR   65 (98)
T ss_dssp             SSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHH
T ss_pred             CCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHH
Confidence            47999999999999999999999999999999997

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21

Probab=99.38  E-value=4.7e-14  Score=109.97  Aligned_cols=35  Identities=57%  Similarity=0.937  Sum_probs=33.5

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|+||++++|+|||+||.+||+|+|||||||||||
T Consensus        38 ~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLR   72 (97)
T 1yo5_C           38 KGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIR   72 (97)
T ss_dssp             TTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence            47899999999999999999999999999999997

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=99.37  E-value=6.8e-14  Score=108.35  Aligned_cols=34  Identities=68%  Similarity=1.011  Sum_probs=33.0

Q ss_pred             chhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       195 G~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      |.||++++|+|||+||++||+|+|||||||||||
T Consensus        31 g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLR   64 (93)
T 1bc8_C           31 GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR   64 (93)
T ss_dssp             SEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence            7899999999999999999999999999999997

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=99.36  E-value=7.1e-14  Score=110.68  Aligned_cols=35  Identities=46%  Similarity=0.781  Sum_probs=33.4

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      .|+||++++|+|||+||++||+|+|||||||||||
T Consensus        36 ~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLR   70 (107)
T 1wwx_A           36 QGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALR   70 (107)
T ss_dssp             TTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence            46899999999999999999999999999999997

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=99.34  E-value=1.5e-13  Score=107.92  Aligned_cols=35  Identities=60%  Similarity=0.938  Sum_probs=33.7

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|.||++++|+|||+||++||+|+|||||||||||
T Consensus        33 ~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLR   67 (102)
T 2ypr_A           33 HGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALR   67 (102)
T ss_dssp             TTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHT
T ss_pred             CceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            47899999999999999999999999999999998

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.2e-13  Score=110.98  Aligned_cols=34  Identities=41%  Similarity=0.639  Sum_probs=32.9

Q ss_pred             chhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       195 G~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      |+||++++++|||+||++||+|+|||||||||||
T Consensus        36 g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLR   69 (118)
T 2dao_A           36 KIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALR   69 (118)
T ss_dssp             TEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             CeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHH
Confidence            5899999999999999999999999999999997

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=99.33  E-value=1.4e-13  Score=109.45  Aligned_cols=35  Identities=63%  Similarity=0.917  Sum_probs=33.5

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|+||++++|+|||+||.+||+|+|||||||||||
T Consensus        26 ~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLR   60 (110)
T 1awc_A           26 EGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR   60 (110)
T ss_dssp             SSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHH
Confidence            47999999999999999999999999999999997

>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21

Probab=99.30  E-value=2.4e-13  Score=104.44  Aligned_cols=34  Identities=53%  Similarity=0.862  Sum_probs=31.5

Q ss_pred             chhhhh--hHHHHHHHhhhhc-CCCCCchhhhhcccC
Q psy8490         195 GYEKAS--RFEKVARRWGIRK-NKPKMNYEKLSRGLR  228 (228)
Q Consensus       195 G~~K~~--~pEkVAR~WGi~K-n~p~m~ydK~sralr  228 (228)
                      |+||++  ++|+|||+||++| |+|+|||||||||||
T Consensus        29 g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLR   65 (89)
T 1pue_E           29 GTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALR   65 (89)
T ss_dssp             TEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred             cEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHH
Confidence            678875  7999999999999 999999999999997

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=99.30  E-value=2.7e-13  Score=106.54  Aligned_cols=34  Identities=50%  Similarity=0.750  Sum_probs=32.8

Q ss_pred             chhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       195 G~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      |.||++++|+||++||++||+|+|||||||||||
T Consensus        33 g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLR   66 (103)
T 3jtg_A           33 GVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMR   66 (103)
T ss_dssp             TEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred             ceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHH
Confidence            6899999999999999999999999999999997

>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}

Probab=98.96  E-value=2.5e-13  Score=110.45  Aligned_cols=35  Identities=40%  Similarity=0.635  Sum_probs=33.4

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|.||++++++|||+||.+||+|+|||||||||||
T Consensus        31 ~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALR   65 (128)
T 2lf8_A           31 SKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALR   65 (128)
Confidence            36899999999999999999999999999999998

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=99.27  E-value=4.5e-13  Score=111.05  Aligned_cols=35  Identities=71%  Similarity=0.959  Sum_probs=33.5

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      .|.||++++|+|||+||++||+|+|||||||||||
T Consensus        65 ~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLR   99 (146)
T 1gvj_A           65 GWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR   99 (146)
T ss_dssp             TTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            46899999999999999999999999999999997

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=99.26  E-value=7.3e-13  Score=110.78  Aligned_cols=35  Identities=66%  Similarity=0.982  Sum_probs=33.4

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|+||++++|+|||+||++||+|+|||||||||||
T Consensus        31 ~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALR   65 (157)
T 1hbx_G           31 DGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR   65 (157)
T ss_dssp             SSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHH
T ss_pred             CCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHH
Confidence            37899999999999999999999999999999997

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=99.25  E-value=7.8e-13  Score=104.45  Aligned_cols=34  Identities=62%  Similarity=0.899  Sum_probs=32.7

Q ss_pred             chhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       195 G~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      +.||++++|+|||+||++||+|+|||||||||||
T Consensus        38 ~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLR   71 (106)
T 4avp_A           38 MEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLR   71 (106)
T ss_dssp             TEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred             ceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHH
Confidence            5799999999999999999999999999999997

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=99.23  E-value=9.6e-13  Score=111.39  Aligned_cols=35  Identities=71%  Similarity=0.959  Sum_probs=33.5

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|.||++++|+|||+||++||+|+|||||||||||
T Consensus        90 ~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLR  124 (171)
T 2nny_A           90 GWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR  124 (171)
T ss_dssp             TTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            46899999999999999999999999999999997

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=94.46  E-value=0.031  Score=44.44  Aligned_cols=63  Identities=24%  Similarity=0.377  Sum_probs=45.0

Q ss_pred             hHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHH-HhhhcCCCCchHHHHHhhhhcccchhhh
Q psy8490         134 LWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARR-WGIRKNKPKMNYEKLSRGLRRKTGYEKA  199 (228)
Q Consensus       134 LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArl-WG~~Knk~~MtYeKmSRaLRyYYG~~K~  199 (228)
                      .-.=|.++|+|+.+.++|+|...+..|.|.|+++.++. --..  =.--+|..+-|-|-.| |.-|.
T Consensus        20 F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~y--Fkh~nfsSFvRQLN~Y-GF~Kv   83 (125)
T 2ldu_A           20 FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKY--FKHNNMASFVRQLNMY-GFRKV   83 (125)
T ss_dssp             HHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHH--SSCCCHHHHHHHHHHT-TCEEE
T ss_pred             HHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHh--cCCCcHHHHHHHhccc-CceEE
Confidence            33445577889999999999999999999999988752 2111  1223688888888775 55444

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=93.59  E-value=0.047  Score=42.34  Aligned_cols=67  Identities=19%  Similarity=0.331  Sum_probs=47.0

Q ss_pred             hhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhh
Q psy8490         133 QLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASR  201 (228)
Q Consensus       133 ~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~  201 (228)
                      ..-.=|.++|+|+.+.++|+|...+.-|.|.|++++++.==. +-=..-+|..+-|-|-.| |.-|..+
T Consensus        14 ~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp-~yFkh~nfsSFvRQLN~Y-GF~Kv~~   80 (102)
T 3hts_B           14 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLP-KYFKHSNFASFVRQLNMY-GWHKVQD   80 (102)
T ss_dssp             HHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHH-HHCSSCCHHHHHHHHHHT-TEEECC-
T ss_pred             cHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHH-HhcCCCcHHHHHHHhhcC-CceEeec
Confidence            344445677889999999999999999999999888753111 111234678888888775 6656543

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=92.66  E-value=0.049  Score=41.80  Aligned_cols=60  Identities=27%  Similarity=0.408  Sum_probs=42.7

Q ss_pred             HHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhh
Q psy8490         138 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKA  199 (228)
Q Consensus       138 Ll~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~  199 (228)
                      |.++|+|+.+.++|+|...+..|.|.|+++.++.==. +-=..-+|..+-|-|-.| |.-|.
T Consensus        11 L~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~yFkh~n~~SFvRQLN~Y-GF~Kv   70 (106)
T 1hks_A           11 LWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLP-LNYKHNNMASFIRQLNMY-GFHKI   70 (106)
T ss_dssp             HHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTST-TTTSCCCHHHHHHHHHHH-CCCCS
T ss_pred             HHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhH-HhcCCCcHHHHHHhhhcC-CCeEE
Confidence            4577899999999999999999999999876542111 111224788888888775 54444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d1gvja_	142	a.4.5.21 (A:) ETS-1 transcription factor, residues	3e-34
d1flia_	98	a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId:	8e-32
d1awca_	110	a.4.5.21 (A:) GA binding protein (GABP) alpha {Mou	2e-31
d1duxc_	86	a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId:	4e-31
d1hbxg_	155	a.4.5.21 (G:) Serum response factor accessory prot	5e-29
d1puee_	88	a.4.5.21 (E:) Transcription factor PU.1, residues	6e-29
d1wwxa1	94	a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human	5e-28
d1yo5c1	88	a.4.5.21 (C:247-334) Sam pointed domain containing	1e-27

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 3e-34
 Identities = 72/109 (66%), Positives = 80/109 (73%), Gaps = 12/109 (11%)

Query: 100 SSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWE 159
           +  +  KP    PA+ LAGY       TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWE
Sbjct: 17  ADLNKDKPVI--PAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWE 67

Query: 160 FKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARR 208
           FKL+DPDEVARRWG RKNKPKMNYEKLSRGLR    Y   +   K A +
Sbjct: 68  FKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRY---YYDKNIIHKTAGK 113

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (275), Expect = 8e-32
 Identities = 48/81 (59%), Positives = 56/81 (69%), Gaps = 3/81 (3%)

Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
           GSG IQLWQFLLELL+D    + I+W G   EFK+TDPDEVARRWG RK+KP MNY+KLS
Sbjct: 2   GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61

Query: 188 RGLRRKTGYEKASRFEKVARR 208
           R LR    Y   +   KV  +
Sbjct: 62  RALRY---YYDKNIMTKVHGK 79

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (274), Expect = 2e-31
 Identities = 46/77 (59%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
           IQLWQFLLELLTDK  +  ISW GD  EFKL  P+ VA++WG RKNKP MNYEKLSR LR
Sbjct: 1   IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60

Query: 192 RKTGYEKASRFEKVARR 208
               Y       KV  +
Sbjct: 61  Y---YYDGDMICKVQGK 74

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 4e-31
 Identities = 41/78 (52%), Positives = 51/78 (65%), Gaps = 4/78 (5%)

Query: 132 IQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGL 190
           + LWQFLL+LL ++     ISWT  DG EFKL D +EVAR WG+RKNK  MNY+KLSR L
Sbjct: 1   VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 60

Query: 191 RRKTGYEKASRFEKVARR 208
           R    Y   +   KV+ +
Sbjct: 61  RY---YYDKNIIRKVSGQ 75

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 5e-29
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
           I LWQFLL+LL     +  I WT +  +FKL   +EVAR WGIRKNKP MNY+KLSR LR
Sbjct: 4   ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 63

Query: 192 RKTGYEKASRFEKVARR 208
               Y   +  +KV  +
Sbjct: 64  Y---YYVKNIIKKVNGQ 77

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 6e-29
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 7/81 (8%)

Query: 132 IQLWQFLLELLTDKTCQAFISWTGDG---WEFKLTDPDEVARRWGIRK-NKPKMNYEKLS 187
           I+L+QFLL+LL     +  I W       ++F     + +A RWGI+K N+ KM YEK++
Sbjct: 2   IRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMA 61

Query: 188 RGLRRKTGYEKASRFEKVARR 208
           R LR    Y K    +KV ++
Sbjct: 62  RALRN---YGKTGEVKKVKKK 79

>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: E74-like factor 5 ese-2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.9 bits (249), Expect = 5e-28
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 133 QLWQFLLELLTD-KTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGL 190
            LW+F+ +LL   +     + W   +   F++   + +A+ WG RK   +M YEKLSR L
Sbjct: 3   HLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRAL 62

Query: 191 RRKTGYEKASRFEKVARR 208
           R    Y K    E+V RR
Sbjct: 63  RY---YYKTGILERVDRR 77

>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Sam pointed domain containing ets transcription SPDEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (246), Expect = 1e-27
 Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 131 PIQLWQFLLELLTDK-TCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSR 188
           PI LWQFL ELL    +   FI W   +   FK+ D  +VAR WGIRKN+P MNY+KLSR
Sbjct: 2   PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSR 61

Query: 189 GLRRKTGYEKASRFEKV 205
            +R+   Y K     K 
Sbjct: 62  SIRQ---YYKKGIIRKP 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	99.96
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	99.96
d1yo5c1	88	Sam pointed domain containing ets transcription SP	99.96
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	99.96
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	99.95
d1wwxa1	94	E74-like factor 5 ese-2b {Human (Homo sapiens) [Ta	99.95
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1yo5c1	88	Sam pointed domain containing ets transcription SP	99.38
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1wwxa1	94	E74-like factor 5 ese-2b {Human (Homo sapiens) [Ta	99.33
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	99.3
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	99.28
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	99.24
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	99.2
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	95.37
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	94.41

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-33  Score=217.33  Aligned_cols=77  Identities=61%  Similarity=1.006  Sum_probs=70.3

Q ss_pred             CCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         127 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       127 ~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      +|+|+++|||||++||.|+++.+||+|+++++||+++|+++||++||.+|||++||||||||||||||   +...++||.
T Consensus         1 pg~g~~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY---~~~il~Kv~   77 (98)
T d1flia_           1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY---DKNIMTKVH   77 (98)
T ss_dssp             CCCSSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH---HTTSCCCBG
T ss_pred             CCCCcccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH---hccceeecc
Confidence            47899999999999999999999999999999999999999999999999999999999999999997   334455554

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-32  Score=205.84  Aligned_cols=63  Identities=59%  Similarity=0.991  Sum_probs=61.4

Q ss_pred             chhHHHHHHhhCCCCCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhccc
Q psy8490         132 IQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT  194 (228)
Q Consensus       132 i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYY  194 (228)
                      |+|||||++||.|++++++|+|||+ +|+|+|+||++||++||.+||+++||||||||||||||
T Consensus         1 i~LwqFL~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY   64 (86)
T d1duxc_           1 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYY   64 (86)
T ss_dssp             CCHHHHHHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999999996 79999999999999999999999999999999999997

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-31  Score=219.28  Aligned_cols=68  Identities=90%  Similarity=1.524  Sum_probs=66.3

Q ss_pred             CCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhccc
Q psy8490         127 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT  194 (228)
Q Consensus       127 ~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYY  194 (228)
                      .++|+++|||||++||.|++|.+||+|||++++|+++|+++||++||.+||+++||||||||||||||
T Consensus        35 ~~~g~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY  102 (142)
T d1gvja_          35 TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYY  102 (142)
T ss_dssp             HTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             CCCCeeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999999999999999999997

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.2e-31  Score=209.77  Aligned_cols=63  Identities=68%  Similarity=1.097  Sum_probs=61.8

Q ss_pred             chhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhccc
Q psy8490         132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT  194 (228)
Q Consensus       132 i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYY  194 (228)
                      |+|||||++||.|+++.+||+|||++|+|+++||++||++||.+||+++||||||||||||||
T Consensus         1 i~Lw~FL~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY   63 (110)
T d1awca_           1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             CCHHHHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             CcHHHHHHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999999997

>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Sam pointed domain containing ets transcription SPDEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-31  Score=203.57  Aligned_cols=64  Identities=53%  Similarity=0.943  Sum_probs=61.1

Q ss_pred             cchhHHHHHHhhCCC-CCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhccc
Q psy8490         131 PIQLWQFLLELLTDK-TCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT  194 (228)
Q Consensus       131 ~i~LWqFLl~LL~d~-~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYY  194 (228)
                      +|+|||||++||.|+ +++++|+|||+ .|+|+|+||++||++||.+||+++||||||||||||||
T Consensus         2 pi~Lw~FL~~LL~d~~~~~~~I~Wt~~~~g~Fkl~~~~~VA~lWG~~Knk~~M~YeklSRALRyYY   67 (88)
T d1yo5c1           2 PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYY   67 (88)
T ss_dssp             CCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHcCccccCCCeEEECCCCceEEecCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence            689999999999986 68999999997 69999999999999999999999999999999999997

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3e-31  Score=202.04  Aligned_cols=74  Identities=39%  Similarity=0.722  Sum_probs=64.9

Q ss_pred             cchhHHHHHHhhCCCCCCCceeeecC-CceEEEcC--hHHHHHHHhhhc-CCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         131 PIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTD--PDEVARRWGIRK-NKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       131 ~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlvd--pe~VArlWG~~K-nk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      +|+|||||++||.|+++.++|+|||+ .|+|+|++  |++||++||.+| |+++||||||||||||||   +...++||.
T Consensus         1 qi~LwqFL~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLRyYY---~~~il~Kv~   77 (88)
T d1puee_           1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYG---KTGEVKKVK   77 (88)
T ss_dssp             CCCHHHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH---HHSSEEECS
T ss_pred             CccHHHHHHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHH---hccceeecc
Confidence            58999999999999999999999997 69999986  889999999999 889999999999999997   333445554


Q ss_pred             H
Q psy8490         207 R  207 (228)
Q Consensus       207 R  207 (228)
                      +
T Consensus        78 ~   78 (88)
T d1puee_          78 K   78 (88)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-30  Score=216.10  Aligned_cols=73  Identities=52%  Similarity=0.864  Sum_probs=67.3

Q ss_pred             cchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490         131 PIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA  206 (228)
Q Consensus       131 ~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA  206 (228)
                      .|+|||||++||.|+++.++|+|||++|||+|+|+++||++||.+|||++||||||||||||||   +...++||.
T Consensus         3 ~i~Lw~FL~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY---~k~il~Kv~   75 (155)
T d1hbxg_           3 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYY---VKNIIKKVN   75 (155)
T ss_dssp             CCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHH---HTTSEEECS
T ss_pred             eeeHHHHHHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHH---hcCCEeecc
Confidence            5899999999999999999999999999999999999999999999999999999999999997   334455665

>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: E74-like factor 5 ese-2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-30  Score=198.88  Aligned_cols=63  Identities=33%  Similarity=0.667  Sum_probs=59.7

Q ss_pred             chhHHHHHHhhCCC-CCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhccc
Q psy8490         132 IQLWQFLLELLTDK-TCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT  194 (228)
Q Consensus       132 i~LWqFLl~LL~d~-~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYY  194 (228)
                      .+|||||++||.|+ .+.++|+|||+ .|+|+|+||++||++||.+|||++||||||||||||||
T Consensus         2 ~~LwqFL~~LL~d~~~~~~~I~Wt~k~~g~Fkl~d~~~VA~lWG~~K~~~~M~YeklSRaLRyYY   66 (94)
T d1wwxa1           2 SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY   66 (94)
T ss_dssp             CCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCccCCCeEEEEcCCCcEEEEcCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH
Confidence            58999999999886 67899999996 79999999999999999999999999999999999997

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.9e-14  Score=108.24  Aligned_cols=35  Identities=60%  Similarity=0.873  Sum_probs=33.6

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      .|+||++++|+||++||.+||+|+|||||||||||
T Consensus        27 ~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLR   61 (86)
T d1duxc_          27 GGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALR   61 (86)
T ss_dssp             TTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHH
T ss_pred             CCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            47899999999999999999999999999999997

>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Sam pointed domain containing ets transcription SPDEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2e-14  Score=108.51  Aligned_cols=35  Identities=57%  Similarity=0.937  Sum_probs=33.6

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|+||++++|+||++||.+||+|+|||||||||||
T Consensus        30 ~g~Fkl~~~~~VA~lWG~~Knk~~M~YeklSRALR   64 (88)
T d1yo5c1          30 KGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIR   64 (88)
T ss_dssp             TTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CceEEecCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence            47899999999999999999999999999999997

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.4e-14  Score=107.98  Aligned_cols=34  Identities=62%  Similarity=0.974  Sum_probs=33.0

Q ss_pred             chhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       195 G~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      |+||++++|+||++||.+||+|+|||||||||||
T Consensus        32 geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLR   65 (98)
T d1flia_          32 GEFKMTDPDEVARRWGERKSKPNMNYDKLSRALR   65 (98)
T ss_dssp             SSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHH
T ss_pred             CEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence            7899999999999999999999999999999997

>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: E74-like factor 5 ese-2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6e-14  Score=107.06  Aligned_cols=35  Identities=46%  Similarity=0.781  Sum_probs=33.4

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|+||++++|+||++||.+||+|+|||||||||||
T Consensus        29 ~g~Fkl~d~~~VA~lWG~~K~~~~M~YeklSRaLR   63 (94)
T d1wwxa1          29 QGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALR   63 (94)
T ss_dssp             TTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CcEEEEcCHHHHHHHHHhhcCCCCCcHHHHHHHHH
Confidence            46899999999999999999999999999999997

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.3e-13  Score=107.69  Aligned_cols=35  Identities=63%  Similarity=0.917  Sum_probs=33.5

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|.||++++|+||++||.+||+|+|||||||||||
T Consensus        26 ~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLR   60 (110)
T d1awca_          26 EGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR   60 (110)
T ss_dssp             SSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHH
Confidence            37899999999999999999999999999999997

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-13  Score=111.98  Aligned_cols=35  Identities=66%  Similarity=0.982  Sum_probs=33.6

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      .|+||++++|+|||+||++||+++|||||||||||
T Consensus        29 ~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLR   63 (155)
T d1hbxg_          29 DGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR   63 (155)
T ss_dssp             SSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHH
T ss_pred             CCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence            37899999999999999999999999999999997

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=3.9e-13  Score=101.43  Aligned_cols=35  Identities=51%  Similarity=0.831  Sum_probs=30.8

Q ss_pred             cchhhhhh--HHHHHHHhhhhc-CCCCCchhhhhcccC
Q psy8490         194 TGYEKASR--FEKVARRWGIRK-NKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~--pEkVAR~WGi~K-n~p~m~ydK~sralr  228 (228)
                      .|.|++++  +|+||++||.+| |+|+|||||||||||
T Consensus        28 ~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLR   65 (88)
T d1puee_          28 KGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALR   65 (88)
T ss_dssp             TTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred             CceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHH
Confidence            35667765  899999999998 899999999999997

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=8.4e-13  Score=107.01  Aligned_cols=35  Identities=71%  Similarity=0.959  Sum_probs=33.3

Q ss_pred             cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490         194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR  228 (228)
Q Consensus       194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr  228 (228)
                      -|.||++++|+||++||.+||+++|||||||||||
T Consensus        65 ~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALR   99 (142)
T d1gvja_          65 GWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR   99 (142)
T ss_dssp             TTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHH
Confidence            36799999999999999999999999999999997

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=95.37  E-value=0.0075  Score=44.03  Aligned_cols=61  Identities=20%  Similarity=0.361  Sum_probs=45.6

Q ss_pred             HHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhh
Q psy8490         136 QFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEK  198 (228)
Q Consensus       136 qFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K  198 (228)
                      .=|.++|+|+.+.++|+|...+.-|.|.|++++++.--.+- =..-+|..+.|-|..| |.-|
T Consensus         7 ~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~-F~~~~~~SF~RQLn~y-GF~k   67 (92)
T d2htsa_           7 NKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKY-FKHSNFASFVRQLNMY-GWHK   67 (92)
T ss_dssp             HHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHH-CTTCCHHHHHHHHHHT-TEEC
T ss_pred             HHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHh-cCCCCHHHHHHHHHhC-CeEE
Confidence            34668889999999999999888899999998876544321 1234688888888876 4433

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.41  E-value=0.011  Score=43.41  Aligned_cols=60  Identities=27%  Similarity=0.394  Sum_probs=43.7

Q ss_pred             HHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhh
Q psy8490         137 FLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEK  198 (228)
Q Consensus       137 FLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K  198 (228)
                      =|.++|+|+.+.++|+|...+.-|.|.|++++++.-=.+ .=..-+|..+-|-|-.| |-.|
T Consensus        10 KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~-~Fk~~~~~SF~RQLn~y-GF~k   69 (106)
T d1hksa_          10 KLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPL-NYKHNNMASFIRQLNMY-GFHK   69 (106)
T ss_dssp             HHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTT-TTSCCCHHHHHHHHHHH-CCCC
T ss_pred             HHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhh-hccccCHHHHHHHHHHC-CCEE
Confidence            355788999999999999999999999997665433221 11235799999999776 4433