Psyllid ID: psy8545
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | 2.2.26 [Sep-21-2011] | |||||||
| Q96L42 | 1107 | Potassium voltage-gated c | yes | N/A | 0.595 | 0.294 | 0.578 | 1e-120 | |
| P59111 | 1102 | Potassium voltage-gated c | no | N/A | 0.595 | 0.295 | 0.578 | 1e-120 | |
| Q9QWS8 | 1102 | Potassium voltage-gated c | yes | N/A | 0.595 | 0.295 | 0.578 | 1e-120 | |
| Q9R1T9 | 1017 | Potassium voltage-gated c | no | N/A | 0.696 | 0.374 | 0.521 | 1e-119 | |
| Q9UQ05 | 1017 | Potassium voltage-gated c | no | N/A | 0.650 | 0.350 | 0.546 | 1e-118 | |
| O89047 | 1087 | Potassium voltage-gated c | no | N/A | 0.700 | 0.352 | 0.454 | 1e-105 | |
| Q9ULD8 | 1083 | Potassium voltage-gated c | no | N/A | 0.652 | 0.329 | 0.480 | 1e-105 | |
| Q9WVJ0 | 1087 | Potassium voltage-gated c | no | N/A | 0.700 | 0.352 | 0.457 | 1e-105 | |
| Q9H252 | 994 | Potassium voltage-gated c | no | N/A | 0.586 | 0.322 | 0.454 | 2e-85 | |
| O08962 | 1163 | Potassium voltage-gated c | no | N/A | 0.585 | 0.275 | 0.442 | 2e-85 |
| >sp|Q96L42|KCNH8_HUMAN Potassium voltage-gated channel subfamily H member 8 OS=Homo sapiens GN=KCNH8 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/351 (57%), Positives = 271/351 (77%), Gaps = 25/351 (7%)
Query: 4 YSQYSALILTLLMLSFTLVAHWLACLWFVIADYER-NRYRQDWDLGWIHTLAERLKV--- 59
YSQ+S ++LTLLM F L+AHW+AC+W+VI ER + W++GW+H L +RL+
Sbjct: 348 YSQHSTIVLTLLMSMFALLAHWMACIWYVIGKMEREDNSLLKWEVGWLHELGKRLESPYY 407
Query: 60 ---NVSEISHRESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFG 116
+ S R +YI ALYFT SSLTSVGFGNVSANT AEKIFSICTMLIGALMHA+VFG
Sbjct: 408 GNNTLGGPSIRSAYIAALYFTLSSLTSVGFGNVSANTDAEKIFSICTMLIGALMHALVFG 467
Query: 117 NVTAIIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETL 176
NVTAIIQRMYSR SLY T+ +DLK+F+ ++ +P++LKQRM +YFQT WS+++GID +E L
Sbjct: 468 NVTAIIQRMYSRWSLYHTRTKDLKDFIRVHHLPQQLKQRMLEYFQTTWSVNNGIDSNELL 527
Query: 177 KEFPEELRGDVSMHLHREILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSS 236
K+FP+ELR D++MHL++EILQL +FE A++GCL+ LSLHI+ +FCAPGEYL+ +GD L +
Sbjct: 528 KDFPDELRSDITMHLNKEILQLSLFECASRGCLRSLSLHIKTSFCAPGEYLLRQGDALQA 587
Query: 237 IYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSC 296
IY++C+GSMEV+++ MV+AILGKGDL+G ++S+ D ++K++
Sbjct: 588 IYFVCSGSMEVLKDSMVLAILGKGDLIGANLSI------------------KDQVIKTNA 629
Query: 297 DVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGYEAE 347
DVKALTYCDL+ + + GL EVL LYPEY +F DIQHDLTYN+REG+E++
Sbjct: 630 DVKALTYCDLQCIILKGLFEVLDLYPEYAHKFVEDIQHDLTYNLREGHESD 680
|
Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits a slowly activating, outward rectifying current. Channel properties may be modulated by cAMP and subunit assembly. Homo sapiens (taxid: 9606) |
| >sp|P59111|KCNH8_MOUSE Potassium voltage-gated channel subfamily H member 8 OS=Mus musculus GN=Kcnh8 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9QWS8|KCNH8_RAT Potassium voltage-gated channel subfamily H member 8 OS=Rattus norvegicus GN=Kcnh8 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9R1T9|KCNH4_RAT Potassium voltage-gated channel subfamily H member 4 OS=Rattus norvegicus GN=Kcnh4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9UQ05|KCNH4_HUMAN Potassium voltage-gated channel subfamily H member 4 OS=Homo sapiens GN=KCNH4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|O89047|KCNH3_RAT Potassium voltage-gated channel subfamily H member 3 OS=Rattus norvegicus GN=Kcnh3 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9ULD8|KCNH3_HUMAN Potassium voltage-gated channel subfamily H member 3 OS=Homo sapiens GN=KCNH3 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9WVJ0|KCNH3_MOUSE Potassium voltage-gated channel subfamily H member 3 OS=Mus musculus GN=Kcnh3 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily H member 6 OS=Homo sapiens GN=KCNH6 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|O08962|KCNH2_RAT Potassium voltage-gated channel subfamily H member 2 OS=Rattus norvegicus GN=Kcnh2 PE=1 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | ||||||
| 350426330 | 990 | PREDICTED: potassium voltage-gated chann | 0.948 | 0.524 | 0.680 | 0.0 | |
| 322792024 | 823 | hypothetical protein SINV_09589 [Solenop | 0.945 | 0.628 | 0.680 | 0.0 | |
| 383857459 | 988 | PREDICTED: potassium voltage-gated chann | 0.948 | 0.525 | 0.676 | 0.0 | |
| 340723656 | 990 | PREDICTED: potassium voltage-gated chann | 0.936 | 0.517 | 0.683 | 0.0 | |
| 345481594 | 1008 | PREDICTED: potassium voltage-gated chann | 0.941 | 0.510 | 0.699 | 0.0 | |
| 380022535 | 999 | PREDICTED: potassium voltage-gated chann | 0.950 | 0.520 | 0.673 | 0.0 | |
| 328776551 | 992 | PREDICTED: potassium voltage-gated chann | 0.950 | 0.524 | 0.671 | 0.0 | |
| 357608448 | 1053 | hypothetical protein KGM_17508 [Danaus p | 0.939 | 0.488 | 0.647 | 0.0 | |
| 328709452 | 1477 | PREDICTED: hypothetical protein LOC10056 | 0.882 | 0.327 | 0.710 | 0.0 | |
| 270012947 | 1034 | hypothetical protein TcasGA2_TC004313 [T | 0.963 | 0.509 | 0.608 | 0.0 |
| >gi|350426330|ref|XP_003494406.1| PREDICTED: potassium voltage-gated channel subfamily H member 8-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/566 (68%), Positives = 438/566 (77%), Gaps = 47/566 (8%)
Query: 1 MDRYSQYSALILTLLMLSFTLVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVN 60
MDRYSQYSA+ILT+LML F LVAHWLAC+WFVIA+ ER R DWDLGWIHTLAERLK++
Sbjct: 346 MDRYSQYSAVILTMLMLFFILVAHWLACIWFVIAEKERLRNDDDWDLGWIHTLAERLKIS 405
Query: 61 VSEISHRESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTA 120
V ++H ESYITALYFTCSSLTSVGFGNVSANT +EK FSICTMLIGALMHAVVFGNVTA
Sbjct: 406 VENVTHAESYITALYFTCSSLTSVGFGNVSANTFSEKFFSICTMLIGALMHAVVFGNVTA 465
Query: 121 IIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEFP 180
IIQR+YSRRSLYQTK RDLK+F L+QIP+ELKQRMQDYFQTMWSL+HGID+HETLK+FP
Sbjct: 466 IIQRIYSRRSLYQTKLRDLKDFFVLHQIPEELKQRMQDYFQTMWSLNHGIDIHETLKQFP 525
Query: 181 EELRGDVSMHLHREILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYL 240
EELRGDVSMHLHREIL LPIFEAA+QGCLKLLSL I+NNFCAPGE+LIHKGD LS IYYL
Sbjct: 526 EELRGDVSMHLHREILNLPIFEAASQGCLKLLSLRIKNNFCAPGEFLIHKGDALSYIYYL 585
Query: 241 CNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKA 300
CNGSMEVVQN MVVAILGKGDLVGCDI++ L ++G + G G G D +VKSSCDVKA
Sbjct: 586 CNGSMEVVQNNMVVAILGKGDLVGCDINVHL--QHGSNGGGAGGGGAADVVVKSSCDVKA 643
Query: 301 LTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGYEAE-ESDIGLPSLTLP 359
LTYCDLK +N+ GLVEVLRLYPEYQ EFA+DIQHDLTYNIREGYEAE ESD+ PSLTLP
Sbjct: 644 LTYCDLKCINMHGLVEVLRLYPEYQHEFANDIQHDLTYNIREGYEAEQESDMNGPSLTLP 703
Query: 360 SINEDDE--AGEGETSPLSPPSRSPLHIPMSNSPRHTKI--NMRGAERFRRGELEK---- 411
SI+EDDE EGETSPLSPP++SPLH + SPRH K + R A R RG L +
Sbjct: 704 SISEDDENVPDEGETSPLSPPNKSPLH---TTSPRHAKFRDDYREARRTGRGVLVRGRAA 760
Query: 412 ------------KSSVDRLDTQVTSLHHHVATLSQEVRNAIQALQELATTSSNVASNRYP 459
+ SV+RLDTQ ++LH VATLS EVRNAIQALQ LA +
Sbjct: 761 QVIAQESMEEHIRGSVERLDTQFSTLHQDVATLSYEVRNAIQALQILACS---------- 810
Query: 460 YPLPAHSNPNLPHNTQCPQQRALLQRSSSHPPEMFCWESMDQERYAHCVSQSTQTDYPID 519
SNPNLP T + +L RSSSHPP+ CW+ + A STQTD+P+D
Sbjct: 811 ----PQSNPNLP--TPASRGSGVLARSSSHPPDAICWDPPRRMSDA-----STQTDWPVD 859
Query: 520 MFESFVKENKLRVLEWLGLKHNVYSK 545
+FES+++ N RVL L L + S+
Sbjct: 860 LFESWIRANPQRVLRILELDPDTLSR 885
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322792024|gb|EFZ16129.1| hypothetical protein SINV_09589 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
| >gi|383857459|ref|XP_003704222.1| PREDICTED: potassium voltage-gated channel subfamily H member 8 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|340723656|ref|XP_003400205.1| PREDICTED: potassium voltage-gated channel subfamily H member 8-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
| >gi|345481594|ref|XP_003424408.1| PREDICTED: potassium voltage-gated channel subfamily H member 8-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
| >gi|380022535|ref|XP_003695098.1| PREDICTED: potassium voltage-gated channel subfamily H member 8 [Apis florea] | Back alignment and taxonomy information |
|---|
| >gi|328776551|ref|XP_003249178.1| PREDICTED: potassium voltage-gated channel subfamily H member 8 [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|357608448|gb|EHJ66015.1| hypothetical protein KGM_17508 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
| >gi|328709452|ref|XP_003243964.1| PREDICTED: hypothetical protein LOC100568954 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
| >gi|270012947|gb|EFA09395.1| hypothetical protein TcasGA2_TC004313 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | ||||||
| FB|FBgn0011589 | 1284 | Elk "Eag-like K[+] channel" [D | 0.749 | 0.319 | 0.617 | 9.6e-148 | |
| UNIPROTKB|F1P320 | 1104 | KCNH8 "Uncharacterized protein | 0.491 | 0.243 | 0.579 | 2.4e-112 | |
| UNIPROTKB|F1MDM5 | 957 | KCNH8 "Uncharacterized protein | 0.491 | 0.281 | 0.579 | 6.4e-112 | |
| UNIPROTKB|Q96L42 | 1107 | KCNH8 "Potassium voltage-gated | 0.645 | 0.318 | 0.532 | 1.1e-110 | |
| UNIPROTKB|F1PLB6 | 1108 | KCNH8 "Uncharacterized protein | 0.645 | 0.318 | 0.535 | 2.4e-110 | |
| UNIPROTKB|F1NUV8 | 814 | KCNH4 "Uncharacterized protein | 0.489 | 0.329 | 0.598 | 3.9e-108 | |
| UNIPROTKB|Q9UQ05 | 1017 | KCNH4 "Potassium voltage-gated | 0.605 | 0.325 | 0.558 | 1.7e-105 | |
| UNIPROTKB|F1S0Q7 | 1018 | KCNH4 "Uncharacterized protein | 0.608 | 0.327 | 0.558 | 2.2e-105 | |
| UNIPROTKB|K7GL82 | 1017 | KCNH4 "Uncharacterized protein | 0.608 | 0.327 | 0.558 | 2.2e-105 | |
| RGD|621415 | 1017 | Kcnh4 "potassium voltage-gated | 0.608 | 0.327 | 0.552 | 1.9e-104 |
| FB|FBgn0011589 Elk "Eag-like K[+] channel" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1309 (465.8 bits), Expect = 9.6e-148, Sum P(2) = 9.6e-148
Identities = 260/421 (61%), Positives = 318/421 (75%)
Query: 1 MDRYSQYSAXXXXXXXXXXXXVAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVN 60
+DRYSQ++A AHWLAC+W+VIA E + + ++GW+ LAER +
Sbjct: 388 IDRYSQHTAMILTLLMFSFTLAAHWLACIWYVIAVKEYEWFPES-NIGWLQLLAERKNAS 446
Query: 61 VSEISHRESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTA 120
V+ ++ E+Y TALYFT +SLTSVGFGNVSANT+AEK+F+I MLIGALMHAVVFGNVTA
Sbjct: 447 VAILTTAETYSTALYFTFTSLTSVGFGNVSANTTAEKVFTIIMMLIGALMHAVVFGNVTA 506
Query: 121 IIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEFP 180
IIQRMYSRRSLY++KWRDLK+F+ L+ +PKELKQR++DYFQT WSLSHGID++ETL+EFP
Sbjct: 507 IIQRMYSRRSLYESKWRDLKDFVALHNMPKELKQRIEDYFQTSWSLSHGIDIYETLREFP 566
Query: 181 EELRGDVSMHLHREILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYL 240
EELRGDVSMHLHREILQLPIFEAA+QGCLKLLSLHI+ NFCAPGEYLIHKGD L+ IYYL
Sbjct: 567 EELRGDVSMHLHREILQLPIFEAASQGCLKLLSLHIKTNFCAPGEYLIHKGDALNYIYYL 626
Query: 241 CNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNXXXXXXXXXXXXXDPIVKSSCDVKA 300
CNGSMEV+++ MVVAILGKGDLVG DI++ L + D +V+SS D+KA
Sbjct: 627 CNGSMEVIKDDMVVAILGKGDLVGSDINVHLVATSNGQMTATTNSAGQDVVVRSSSDIKA 686
Query: 301 LTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGYEAEESDIGLPSLTLPS 360
LTYCDLK +++ GLVEVLRLYPEYQQ+FA+DIQHDLT N+REGYE ++SDIG PS LPS
Sbjct: 687 LTYCDLKCIHMGGLVEVLRLYPEYQQQFANDIQHDLTCNLREGYENQDSDIG-PSFPLPS 745
Query: 361 INEDDE-------AGEGETXXXXXXXXXXXHIP-MSNSPRH-TKINMRGAERFRRGELEK 411
I+EDDE G+GE + +SNSP H T+ + G R L +
Sbjct: 746 ISEDDENREEAEEGGKGEKENGGGPPSGASPLHNISNSPLHATRSPLLGMGSPRNQRLHQ 805
Query: 412 K 412
+
Sbjct: 806 R 806
|
|
| UNIPROTKB|F1P320 KCNH8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MDM5 KCNH8 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q96L42 KCNH8 "Potassium voltage-gated channel subfamily H member 8" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PLB6 KCNH8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NUV8 KCNH4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UQ05 KCNH4 "Potassium voltage-gated channel subfamily H member 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S0Q7 KCNH4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|K7GL82 KCNH4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| RGD|621415 Kcnh4 "potassium voltage-gated channel, subfamily H (eag-related), member 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9QWS8 | KCNH8_RAT | No assigned EC number | 0.5783 | 0.5959 | 0.2958 | yes | N/A |
| Q96L42 | KCNH8_HUMAN | No assigned EC number | 0.5783 | 0.5959 | 0.2944 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 547 | |||
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 7e-16 | |
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 1e-12 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 6e-11 | |
| pfam07885 | 74 | pfam07885, Ion_trans_2, Ion channel | 8e-11 | |
| pfam00520 | 194 | pfam00520, Ion_trans, Ion transport protein | 2e-06 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 3e-06 |
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 7e-16
Identities = 63/255 (24%), Positives = 125/255 (49%), Gaps = 16/255 (6%)
Query: 16 MLSFTL-VAHWLACLWFVIADYERNRYRQDWDLGWIHTLAERLKVNVSEISHRESYITAL 74
+LS TL + H CL+++IAD RY WI + N E S YI+A+
Sbjct: 205 LLSVTLFLVHCAGCLYYLIAD----RYPHQ-GKTWIGAVIP----NFRETSLWIRYISAI 255
Query: 75 YFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQT 134
Y++ +++T+VG+G++ A + E IF I ML + A + GN+T ++ R ++
Sbjct: 256 YWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRN 315
Query: 135 KWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGDVSMHLHRE 194
F+ N++P LK ++ Y + + ++ + + + P+ + + HL
Sbjct: 316 SIEAASNFVGRNRLPPRLKDQILAYMCLRFK-AESLNQQQLIDQLPKSICKSICQHLFLP 374
Query: 195 ILQ-LPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGM- 252
+++ + +F+ ++ L LL ++ + P E +I + + +Y + +G +E++ +
Sbjct: 375 VVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGE 434
Query: 253 ---VVAILGKGDLVG 264
VV LG GD+ G
Sbjct: 435 KERVVGTLGCGDIFG 449
|
Length = 823 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel | Back alignment and domain information |
|---|
| >gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| KOG0498|consensus | 727 | 100.0 | ||
| KOG0501|consensus | 971 | 100.0 | ||
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0500|consensus | 536 | 100.0 | ||
| KOG0499|consensus | 815 | 100.0 | ||
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.56 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.46 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.46 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.38 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.36 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.35 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.35 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.34 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.31 | |
| KOG1113|consensus | 368 | 99.23 | ||
| KOG0614|consensus | 732 | 99.18 | ||
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.17 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.15 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 99.12 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.11 | |
| KOG0614|consensus | 732 | 99.09 | ||
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.01 | |
| KOG1113|consensus | 368 | 98.8 | ||
| KOG3713|consensus | 477 | 98.78 | ||
| KOG1419|consensus | 654 | 98.3 | ||
| KOG2968|consensus | 1158 | 98.26 | ||
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.23 | |
| KOG4390|consensus | 632 | 98.17 | ||
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 98.11 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 98.08 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 98.02 | |
| KOG3684|consensus | 489 | 97.97 | ||
| KOG1545|consensus | 507 | 97.85 | ||
| KOG2968|consensus | 1158 | 97.64 | ||
| KOG1420|consensus | 1103 | 97.56 | ||
| KOG1418|consensus | 433 | 97.52 | ||
| KOG3827|consensus | 400 | 97.41 | ||
| KOG4404|consensus | 350 | 97.33 | ||
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.24 | |
| KOG3542|consensus | 1283 | 96.25 | ||
| KOG4404|consensus | 350 | 95.94 | ||
| KOG1418|consensus | 433 | 94.34 | ||
| KOG3542|consensus | 1283 | 91.66 | ||
| KOG3676|consensus | 782 | 82.86 | ||
| KOG3193|consensus | 1087 | 81.18 |
| >KOG0498|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-57 Score=494.70 Aligned_cols=322 Identities=32% Similarity=0.616 Sum_probs=292.8
Q ss_pred CcccccchHHHH------H-HHHHHHHHHHHHHHHHHHHHHhccccccCCCCCC-chhhhhHh-----hhhccCCCCchh
Q psy8545 1 MDRYSQYSALIL------T-LLMLSFTLVAHWLACLWFVIADYERNRYRQDWDL-GWIHTLAE-----RLKVNVSEISHR 67 (547)
Q Consensus 1 ~~ry~~y~~l~l------~-kL~~~~ll~~H~~ACiw~~i~~~~~~~~~~~~~~-~Wl~~~~~-----~~~~~~~~~s~~ 67 (547)
++||+++..+.. + ++|+.+++++||+||+||+++...... +|.. +|+..+.. +...++...+++
T Consensus 216 ~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~---~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~ 292 (727)
T KOG0498|consen 216 FARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPAS---CPRKATWLGSLGRLLSCYNLSFTFGIYSLA 292 (727)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---CccccccccccccccccCcccccccchhHH
Confidence 367777776665 4 999999999999999999999877533 3555 89886432 111125567899
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccCcchhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccC
Q psy8545 68 ESYITALYFTCSSLTSVGFGNVSANTSAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYQTKWRDLKEFLTLNQ 147 (547)
Q Consensus 68 ~~Yi~SlYwai~TltTVGyGdi~p~t~~E~if~i~~mi~G~l~~a~iig~i~~ii~~~~~~~~~~~~k~~~l~~fm~~~~ 147 (547)
.+|++||||+++||||+|||+++|.+..|++|+|++|++|.++||++||||+++++.+.+++.+|+.|+.++++||+.|+
T Consensus 293 ~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~ 372 (727)
T KOG0498|consen 293 LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQ 372 (727)
T ss_pred HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHhhhhhhhhhhcccCCcchhhhhccCCcccccccccccccccc-ccchhhhccHHHHHHHHhhccccccCCCcE
Q psy8545 148 IPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGDVSMHLHREIL-QLPIFEAATQGCLKLLSLHIRNNFCAPGEY 226 (547)
Q Consensus 148 ip~~L~~rv~~Y~~~~~~~~~~~d~~~iL~~Lp~~Lr~~i~~~l~~~ll-~iplF~~ls~~~l~~L~~~l~~~~y~~ge~ 226 (547)
||++||+||++|++|+|..++|+|++++|++||+.||.||.+|++.+++ ++|+|++++++++.+|+.+++...|+|||+
T Consensus 373 LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~ 452 (727)
T KOG0498|consen 373 LPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEY 452 (727)
T ss_pred CCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCe
Confidence 9999999999999999999999999999999999999999999999987 599999999999999999999999999999
Q ss_pred EEccCCCCCcEEEEEceeEEEEEcC----eEEEEcCCCCeechhhhhhhc-cCCCCCCCCCCCCCCCCCccceeEEEEEe
Q psy8545 227 LIHKGDHLSSIYYLCNGSMEVVQNG----MVVAILGKGDLVGCDISMWLS-EKNGGSAVGPGAGTGVDPIVKSSCDVKAL 301 (547)
Q Consensus 227 I~~qGd~~~~lYfI~~G~V~v~~~~----~vl~~l~~Gd~FG~eisl~~~-~p~~~s~~~~~~~~~~~~~~~~~~tv~Al 301 (547)
|++|||+.+.||||++|.+++...+ .++..+++||+||||+..+.. .| +++||+|+
T Consensus 453 iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p-------------------~t~TVral 513 (727)
T KOG0498|consen 453 IIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLP-------------------QTRTVRAL 513 (727)
T ss_pred EEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCC-------------------CCceeehh
Confidence 9999999999999999999999866 689999999999999999876 44 67899999
Q ss_pred eeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhh
Q psy8545 302 TYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGY 344 (547)
Q Consensus 302 t~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~~ 344 (547)
|+|+++.|++++|..+++.||.++..+.+...+-++.+.|...
T Consensus 514 t~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~a 556 (727)
T KOG0498|consen 514 TYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWA 556 (727)
T ss_pred hhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhh
Confidence 9999999999999999999999999999877777777766554
|
|
| >KOG0501|consensus | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0500|consensus | Back alignment and domain information |
|---|
| >KOG0499|consensus | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113|consensus | Back alignment and domain information |
|---|
| >KOG0614|consensus | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >KOG0614|consensus | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1113|consensus | Back alignment and domain information |
|---|
| >KOG3713|consensus | Back alignment and domain information |
|---|
| >KOG1419|consensus | Back alignment and domain information |
|---|
| >KOG2968|consensus | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG4390|consensus | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >KOG3684|consensus | Back alignment and domain information |
|---|
| >KOG1545|consensus | Back alignment and domain information |
|---|
| >KOG2968|consensus | Back alignment and domain information |
|---|
| >KOG1420|consensus | Back alignment and domain information |
|---|
| >KOG1418|consensus | Back alignment and domain information |
|---|
| >KOG3827|consensus | Back alignment and domain information |
|---|
| >KOG4404|consensus | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG3542|consensus | Back alignment and domain information |
|---|
| >KOG4404|consensus | Back alignment and domain information |
|---|
| >KOG1418|consensus | Back alignment and domain information |
|---|
| >KOG3542|consensus | Back alignment and domain information |
|---|
| >KOG3676|consensus | Back alignment and domain information |
|---|
| >KOG3193|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 547 | ||||
| 3ukn_A | 212 | Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN | 2e-72 | ||
| 4f8a_A | 160 | Cyclic Nucleotide Binding-Homology Domain From Mous | 6e-23 | ||
| 3otf_A | 220 | Structural Basis For The Camp-Dependent Gating In H | 3e-12 | ||
| 3u11_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 3e-12 | ||
| 4hbn_A | 205 | Crystal Structure Of The Human Hcn4 Channel C-termi | 9e-12 | ||
| 3u0z_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 1e-10 | ||
| 3ffq_A | 202 | Hcn2i 443-640 Apo-State Length = 202 | 2e-10 | ||
| 3u10_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 2e-10 | ||
| 1q3e_A | 207 | Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | 2e-10 | ||
| 2q0a_A | 200 | Structure And Rearrangements In The Carboxy-Termina | 3e-10 | ||
| 3bpz_A | 202 | Hcn2-I 443-460 E502k In The Presence Of Camp Length | 3e-10 | ||
| 3etq_A | 204 | X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 | 6e-10 | ||
| 1q43_A | 207 | Hcn2i 443-640 In The Presence Of Camp, Selenomethio | 1e-09 | ||
| 2ptm_A | 198 | Structure And Rearrangements In The Carboxy-Termina | 3e-07 | ||
| 3t1c_A | 97 | Crystal Structure Of Nak Channel D66y Mutant Length | 7e-04 |
| >pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 | Back alignment and structure |
|
| >pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1 Potassium Channel Length = 160 | Back alignment and structure |
| >pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 | Back alignment and structure |
| >pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 | Back alignment and structure |
| >pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | Back alignment and structure |
| >pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 | Back alignment and structure |
| >pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 | Back alignment and structure |
| >pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 | Back alignment and structure |
| >pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 | Back alignment and structure |
| >pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 | Back alignment and structure |
| >pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant Length = 97 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 7e-79
Identities = 123/228 (53%), Positives = 175/228 (76%), Gaps = 18/228 (7%)
Query: 120 AIIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEF 179
A+ QRMYSRRSLY T+ +DLK+F+ ++++PK L QRM + FQT WS+++GIDV E LK+F
Sbjct: 2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDF 61
Query: 180 PEELRGDVSMHLHREILQLPIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYY 239
P+ELR D++MHL++E+LQLP+FE+A++GCL+ LSL I+ +FCAPGE+LI +GD L +IY+
Sbjct: 62 PDELRADIAMHLNKELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYF 121
Query: 240 LCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVK 299
+C+GSMEV+++ V+AILGKGDL+G D + ++K++ +VK
Sbjct: 122 VCSGSMEVLKDNTVLAILGKGDLIGSDSLTK------------------EQVIKTNANVK 163
Query: 300 ALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGYEAE 347
ALTYCDL+ +++ GL EVLRLYPEY Q+F +IQHDLTYN+REG A+
Sbjct: 164 ALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLREGSGAD 211
|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155 | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 100.0 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.97 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.97 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.96 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.83 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.76 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.76 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.73 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.73 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.72 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.68 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.68 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.68 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.67 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.66 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.65 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.65 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.65 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.64 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.64 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.64 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.62 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.62 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.62 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.6 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.6 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.59 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.59 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.59 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.58 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.57 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.57 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.55 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.55 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.55 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.54 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.54 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.51 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.51 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.49 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.49 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.49 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.48 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.47 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.44 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.44 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.43 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.41 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.41 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.4 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.35 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.34 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.33 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.33 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.3 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.25 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.23 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.23 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.19 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 99.18 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.17 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.12 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 98.99 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.94 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.93 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.86 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.79 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.74 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.7 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.65 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.63 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.61 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.52 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.39 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 98.28 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 97.47 |
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=281.20 Aligned_cols=210 Identities=59% Similarity=1.054 Sum_probs=185.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhhhccCCchHHHHhhhhhhhhhhcccCCcchhhhhccCCcccccccccccccccccc
Q psy8545 119 TAIIQRMYSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGDVSMHLHREILQL 198 (547)
Q Consensus 119 ~~ii~~~~~~~~~~~~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~~~~~~d~~~iL~~Lp~~Lr~~i~~~l~~~ll~i 198 (547)
++|++++++++.+|++++..+++||+.+++|++|+.||++||+|.|+.+++.+++++++.||++|+.++..+++..+.++
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~~~ 80 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELLQL 80 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGGGS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred chhhhccHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccCCCCC
Q psy8545 199 PIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGS 278 (547)
Q Consensus 199 plF~~ls~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p~~~s 278 (547)
|+|++++++++..|+..++...|+|||+|+++||.++++|||.+|.|+++.++.++..+++|++|| +.+++.+.+
T Consensus 81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG-e~~~~~~~~---- 155 (212)
T 3ukn_A 81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIG-SDSLTKEQV---- 155 (212)
T ss_dssp GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEE-CSCCSSSSC----
T ss_pred HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCCcC-cHHhccCCC----
Confidence 999999999999999999999999999999999999999999999999999889999999999999 777765430
Q ss_pred CCCCCCCCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy8545 279 AVGPGAGTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLTYNIREGYEA 346 (547)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~~~lr~~~e~ 346 (547)
.+++++|+|+++|+++.|++++|.++++.+|++...+.+.+.+++..++|+..+.
T Consensus 156 -------------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~~~~~ 210 (212)
T 3ukn_A 156 -------------IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLREGSGA 210 (212)
T ss_dssp -------------CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC----
T ss_pred -------------CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccccccccc
Confidence 1378899999999999999999999999999999999999999999888876654
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 547 | ||||
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 7e-16 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 1e-12 | |
| d1xl4a2 | 116 | f.14.1.1 (A:23-138) Inward rectifier potassium cha | 1e-10 | |
| d1p7ba2 | 116 | f.14.1.1 (A:36-151) Inward rectifier potassium cha | 1e-08 | |
| d1r3jc_ | 103 | f.14.1.1 (C:) Potassium channel protein {Streptomy | 1e-08 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 6e-06 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 7e-06 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 2e-05 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 8e-05 | |
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 4e-04 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 0.001 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 0.001 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.9 bits (180), Expect = 7e-16
Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 127 SRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGD 186
S R YQ K++ ++++++ +++P + +Q++ DY++ + D L E LR +
Sbjct: 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREE 60
Query: 187 VSMHLHREILQL-PIFEAATQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSM 245
+ R+++ P+F A + + ++ PG+Y+I +G +Y++ +G +
Sbjct: 61 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 120
Query: 246 EVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGAGTGVDPIVKSSCDVKALTYCD 305
V+ G L G G + + V+A TYC
Sbjct: 121 SVLTKGNKEMKLSDGSYFGEICLLTRGRRT--------------------ASVRADTYCR 160
Query: 306 LKSVNVVGLVEVLRLYPEYQQEF 328
L S++V EVL YP ++ F
Sbjct: 161 LYSLSVDNFNEVLEEYPMMRRAF 183
|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.77 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.76 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.76 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.74 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.72 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.71 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.7 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.69 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.68 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.68 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.63 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.62 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.62 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.58 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.57 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.36 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.34 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.3 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 99.16 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.92 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 97.0 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 93.33 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 84.68 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.1e-31 Score=250.99 Aligned_cols=191 Identities=24% Similarity=0.508 Sum_probs=177.9
Q ss_pred HhhHHHHHHHHHHhhhhhhccCCchHHHHhhhhhhhhhhcccCCcchhhhhccCCcccccccccccccccc-ccchhhhc
Q psy8545 126 YSRRSLYQTKWRDLKEFLTLNQIPKELKQRMQDYFQTMWSLSHGIDVHETLKEFPEELRGDVSMHLHREIL-QLPIFEAA 204 (547)
Q Consensus 126 ~~~~~~~~~k~~~l~~fm~~~~ip~~L~~rv~~Y~~~~~~~~~~~d~~~iL~~Lp~~Lr~~i~~~l~~~ll-~iplF~~l 204 (547)
++++.+|++++..+++||+.+++|++|+.||++||+|.|+. ++.+++++++.+|+.|+.++..+++..++ ++|+|+++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 35788999999999999999999999999999999999975 67788899999999999999999998866 69999999
Q ss_pred cHHHHHHHHhhccccccCCCcEEEccCCCCCcEEEEEceeEEEEEcCeEEEEcCCCCeechhhhhhhccCCCCCCCCCCC
Q psy8545 205 TQGCLKLLSLHIRNNFCAPGEYLIHKGDHLSSIYYLCNGSMEVVQNGMVVAILGKGDLVGCDISMWLSEKNGGSAVGPGA 284 (547)
Q Consensus 205 s~~~l~~L~~~l~~~~y~~ge~I~~qGd~~~~lYfI~~G~V~v~~~~~vl~~l~~Gd~FG~eisl~~~~p~~~s~~~~~~ 284 (547)
+..++..|+.+++...|.||++|+++||.++.+|||.+|.|+++.++.....+++|++|| +.+++.+.+
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~~~~l~~G~~fG-e~~~~~~~~---------- 148 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFG-EICLLTRGR---------- 148 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCCEEEECTTCEEC-HHHHHHCSB----------
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCcceeeeccceeee-eeeccCCCc----------
Confidence 999999999999999999999999999999999999999999998877778899999999 899887655
Q ss_pred CCCCCCccceeEEEEEeeeeEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q psy8545 285 GTGVDPIVKSSCDVKALTYCDLKSVNVVGLVEVLRLYPEYQQEFAHDIQHDLT 337 (547)
Q Consensus 285 ~~~~~~~~~~~~tv~Alt~c~ll~I~~~~f~~ll~~~P~~~~~~~~~l~~~L~ 337 (547)
+.++++|.++|+++.|++++|.++++.+|++...+...+.+||.
T Consensus 149 ---------~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL~ 192 (193)
T d1q3ea_ 149 ---------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLD 192 (193)
T ss_dssp ---------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHT
T ss_pred ---------ccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHcC
Confidence 77899999999999999999999999999999999988887763
|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|