Psyllid ID: psy860

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNTT
Secondary Structure (PSIPRED)
ccHHHHHHcccccccHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHcccccccccEEEEcccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccHHHHHHHHcccccccHHcHHEEEccccccccccHHHHHcccccccccEEEEcccccHccHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHcHcccccccHHHHHHHHHHcccccEEEEccccccccccccc
Coil and Loop (DISEMBL)
mhlfqylsgigycpqfngineHLTAQEMLECFSAlrgipgvksgpIIDYWIDLLGsairfspfqaAQNSLLMTNIMHLFQYLsgigycpqfngineHLTAQEMLECFSAlrgipgvksgpiIDYWIDLLGLTeyrhrvsgrysggnkrkLSTAMALIgdrddgfqklpfssqnlyntt
Flexible Loop (DISEMBL)
MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRvsgrysggnkrkLSTAMALIGDrddgfqklpfssqnlyntt
Low Complexity Region (SEG)
MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNTT
Disordered region (IsUnstruct)
**LFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYS***********ALI*********************
Disordered Region (DISOPRED)
*HLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN**
Disordered Region (DISEMBL)
MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNTT
Disordered Region (DISPRO)
MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
O95477	2261	ATP-binding cassette sub-	yes	N/A	0.494	0.038	0.510	1e-17
P41233	2261	ATP-binding cassette sub-	yes	N/A	0.494	0.038	0.5	7e-17
P41234	2434	ATP-binding cassette sub-	no	N/A	0.455	0.033	0.481	2e-16
P78363	2273	Retinal-specific ATP-bind	no	N/A	0.685	0.053	0.403	4e-16
Q9ESR9	2434	ATP-binding cassette sub-	no	N/A	0.455	0.033	0.469	3e-15
O35600	2310	Retinal-specific ATP-bind	no	N/A	0.685	0.052	0.379	6e-15
Q9BZC7	2435	ATP-binding cassette sub-	no	N/A	0.471	0.034	0.440	2e-14
Q8IZY2	2146	ATP-binding cassette sub-	no	N/A	0.421	0.034	0.493	1e-13
Q7TNJ2	2170	ATP-binding cassette sub-	no	N/A	0.421	0.034	0.493	2e-13
Q91V24	2159	ATP-binding cassette sub-	no	N/A	0.421	0.034	0.493	2e-13

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 67   QNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWI 126
            +NS+L +NI  + Q    +GYCPQF+ I E LT +E +E F+ LRG+P  + G + ++ I
Sbjct: 1974 KNSIL-SNIHEVHQ---NMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAI 2029

Query: 127  DLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158
              LGL +Y  + +G YSGGNKRKLSTAMALIG
Sbjct: 2030 RKLGLVKYGEKYAGNYSGGNKRKLSTAMALIG 2061

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.
Homo sapiens (taxid: 9606)

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score = 86.7 bits (213), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 4/92 (4%)

Query: 67   QNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWI 126
            +NS+L +NI  + Q    +GYCPQF+ I E LT +E +E F+ LRG+P  + G + ++ I
Sbjct: 1974 KNSIL-SNIHEVHQ---NMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAI 2029

Query: 127  DLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158
              LGL +Y  + +  YSGGNKRKLSTAMALIG
Sbjct: 2030 RKLGLVKYGEKYASNYSGGNKRKLSTAMALIG 2061

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Mus musculus (taxid: 10090)

>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 56/81 (69%)

Query: 78   LFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR 137
            L Q    +GYCPQF+ + + LTA+E L+ ++ LRGIP      ++ + ++ L LT+Y  +
Sbjct: 2123 LLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVKWALEKLELTKYADK 2182

Query: 138  VSGRYSGGNKRKLSTAMALIG 158
             +G YSGGNKRKLSTA+ALIG
Sbjct: 2183 PAGTYSGGNKRKLSTAIALIG 2203

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Mus musculus (taxid: 10090)

>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 7/129 (5%)

Query: 30   ECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP 89
            ECF    G+ GV        +  L G     S         ++TNI  + Q    +GYCP
Sbjct: 1966 ECF----GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISEVHQ---NMGYCP 2018

Query: 90   QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK 149
            QF+ I+E LT +E L  ++ LRG+P  +   + ++ I  LGLT Y   ++G YSGGNKRK
Sbjct: 2019 QFDAIDELLTGREHLYLYARLRGVPAEEIEKVANWSIKSLGLTVYADCLAGTYSGGNKRK 2078

Query: 150  LSTAMALIG 158
            LSTA+ALIG
Sbjct: 2079 LSTAIALIG 2087

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Homo sapiens (taxid: 9606)

>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 55/81 (67%)

Query: 78   LFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR 137
            L Q    +GYCPQF+ + + LTA+E L+ ++ LRGIP      ++ + ++ L LT+   +
Sbjct: 2123 LLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVRWALEKLELTKCADK 2182

Query: 138  VSGRYSGGNKRKLSTAMALIG 158
             +G YSGGNKRKLSTA+ALIG
Sbjct: 2183 PAGSYSGGNKRKLSTAIALIG 2203

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Rattus norvegicus (taxid: 10116)

>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 7/129 (5%)

Query: 30   ECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP 89
            ECF    G+ GV        +  L G     S         ++T+I  + Q    +GYCP
Sbjct: 1965 ECF----GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTSISDVHQ---NMGYCP 2017

Query: 90   QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK 149
            QF+ I++ LT +E L  ++ LRG+P  +   + ++ I  LGL+ Y  R++G YSGGNKRK
Sbjct: 2018 QFDAIDDLLTGREHLYLYARLRGVPSKEIEKVANWGIQSLGLSLYADRLAGTYSGGNKRK 2077

Query: 150  LSTAMALIG 158
            LSTA+AL G
Sbjct: 2078 LSTAIALTG 2086

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Mus musculus (taxid: 10090)

>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 55/84 (65%)

Query: 75   IMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY 134
            +  L Q    +GYCPQ + + + LTA+E L+ ++ LRGI       ++ + ++ L LT+Y
Sbjct: 2119 LKELLQVQQSLGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKY 2178

Query: 135  RHRVSGRYSGGNKRKLSTAMALIG 158
              + +G YSGGNKRKLSTA+ALIG
Sbjct: 2179 ADKPAGTYSGGNKRKLSTAIALIG 2202

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Homo sapiens (taxid: 9606)

>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 49/75 (65%)

Query: 85   IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
            +GYCPQ + I E LT +E LE  + LRG+P  +        +  LGL+ Y  R +G YSG
Sbjct: 1869 MGYCPQSDAIFELLTGREHLELLARLRGVPEAQVAQTAGSGLARLGLSWYADRPAGTYSG 1928

Query: 145  GNKRKLSTAMALIGD 159
            GNKRKL+TA+AL+GD
Sbjct: 1929 GNKRKLATALALVGD 1943

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Homo sapiens (taxid: 9606)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 49/75 (65%)

Query: 85   IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
            +GYCPQ + I + LT +E LE F+ LRG+P  +        +  LGL  Y  R +G YSG
Sbjct: 1894 MGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSG 1953

Query: 145  GNKRKLSTAMALIGD 159
            GNKRKL+TA+AL+GD
Sbjct: 1954 GNKRKLATALALVGD 1968

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 49/75 (65%)

Query: 85   IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
            +GYCPQ + I + LT +E LE F+ LRG+P  +        +  LGL  Y  R +G YSG
Sbjct: 1883 MGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADRPAGTYSG 1942

Query: 145  GNKRKLSTAMALIGD 159
            GNKRKL+TA+AL+GD
Sbjct: 1943 GNKRKLATALALVGD 1957

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
328705811	1747	PREDICTED: ATP-binding cassette sub-fami	0.511	0.052	0.571	2e-21
328722868	670	PREDICTED: ATP-binding cassette sub-fami	0.511	0.135	0.560	3e-20
380798443	1135	ATP-binding cassette sub-family A member	0.494	0.077	0.510	1e-16
432927363	2281	PREDICTED: retinal-specific ATP-binding	0.477	0.037	0.488	3e-16
391342738	1726	PREDICTED: ATP-binding cassette sub-fami	0.449	0.046	0.5	5e-16
395823965	2261	PREDICTED: ATP-binding cassette sub-fami	0.494	0.038	0.510	5e-16
334333485	2255	PREDICTED: ATP-binding cassette sub-fami	0.494	0.039	0.510	6e-16
355666205	667	ATP-binding cassette, sub-family A , mem	0.494	0.131	0.5	6e-16
291382853	2261	PREDICTED: ATP-binding cassette, sub-fam	0.494	0.038	0.510	6e-16
355567561	2261	ATP-binding cassette transporter 1 [Maca	0.494	0.038	0.510	7e-16

>gi|328705811|ref|XP_001947916.2| PREDICTED: ATP-binding cassette sub-family A member 3-like [Acyrthosiphon pisum]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 62/91 (68%)

Query: 80   QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS 139
            QY+S IGYCPQF+ IN+ LT +E L   + LRGI    +   +D WI LLGL EY+ RV 
Sbjct: 1496 QYVSLIGYCPQFDAINDQLTGRETLRLMAILRGISPTNTKKHVDKWIKLLGLEEYKDRVC 1555

Query: 140  GRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170
            G+YSGGNKRKL+TAMALIGD    F   P S
Sbjct: 1556 GKYSGGNKRKLNTAMALIGDPPVVFLDEPTS 1586

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722868|ref|XP_001949822.2| PREDICTED: ATP-binding cassette sub-family A member 1-like [Acyrthosiphon pisum]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 63/91 (69%)

Query: 80  QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS 139
           QY+S IGYCPQF+ IN+ LTA+E L+  + LRGI    +   +D WI LLGL E++ R+ 
Sbjct: 419 QYVSLIGYCPQFDAINDQLTARETLKLMAILRGISPENAKNHVDKWIRLLGLEEHKDRIC 478

Query: 140 GRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170
           G YSGGNKRKL+TAMALIGD    F   P S
Sbjct: 479 GTYSGGNKRKLNTAMALIGDPPVVFLDEPTS 509

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380798443|gb|AFE71097.1| ATP-binding cassette sub-family A member 1, partial [Macaca mulatta]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 67  QNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWI 126
           +NS+L +NI  + Q    +GYCPQF+ I E LT +E +E F+ LRG+P  + G + ++ I
Sbjct: 848 KNSIL-SNIHEVHQ---NMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAI 903

Query: 127 DLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158
             LGL +Y  + +G YSGGNKRKLSTAMALIG
Sbjct: 904 RKLGLVKYGEKYAGNYSGGNKRKLSTAMALIG 935

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432927363|ref|XP_004080989.1| PREDICTED: retinal-specific ATP-binding cassette transporter-like [Oryzias latipes]

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 62/88 (70%), Gaps = 3/88 (3%)

Query: 71   LMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 130
            ++TNI+ + Q    +GYCPQF+ I+E LT +E L  ++ LRG+P  +   + D+ I  LG
Sbjct: 2002 ILTNILDVHQ---NMGYCPQFDAIDELLTGREHLHLYARLRGVPESQISRVADWAIQKLG 2058

Query: 131  LTEYRHRVSGRYSGGNKRKLSTAMALIG 158
            L+EY  R +G YSGGN+RKLSTA+A+IG
Sbjct: 2059 LSEYASRTAGTYSGGNRRKLSTAIAMIG 2086

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|391342738|ref|XP_003745672.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Metaseiulus occidentalis]

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 58/80 (72%)

Query: 80   QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS 139
            Q+   IGYCPQF+ + E +T +EMLE F ALRG+P  ++  ++D+ I +  L E+ H+ +
Sbjct: 1462 QFQGYIGYCPQFDALIESMTGREMLELFCALRGVPTHQTREMVDFMIGVADLQEHAHKPT 1521

Query: 140  GRYSGGNKRKLSTAMALIGD 159
            G YSGGNKRKLS A+A+IG+
Sbjct: 1522 GMYSGGNKRKLSIAIAMIGN 1541

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395823965|ref|XP_003785245.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Otolemur garnettii]

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 67   QNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWI 126
            +NS+L +NI  + Q    +GYCPQF+ I E LT +E +E F+ LRG+P  + G + ++ I
Sbjct: 1974 KNSIL-SNIQEVHQ---NMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAI 2029

Query: 127  DLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158
              LGL +Y  + +G YSGGNKRKLSTAMALIG
Sbjct: 2030 RKLGLVKYGEKYAGNYSGGNKRKLSTAMALIG 2061

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334333485|ref|XP_001368140.2| PREDICTED: ATP-binding cassette sub-family A member 1 [Monodelphis domestica]

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 65/92 (70%), Gaps = 4/92 (4%)

Query: 67   QNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWI 126
            +NS+L ++I  + Q    +GYCPQF+ I E LT +E +E F+ LRG+P  + G + D+ I
Sbjct: 1968 KNSIL-SDIHEVHQ---NMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGDWAI 2023

Query: 127  DLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158
              LGLT+Y  + +G YSGGNKRKLSTA+ALIG
Sbjct: 2024 RKLGLTKYGEKYAGNYSGGNKRKLSTAIALIG 2055

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355666205|gb|AER93459.1| ATP-binding cassette, sub-family A , member 1 [Mustela putorius furo]

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 67  QNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWI 126
           +NS+L ++I  + Q    +GYCPQF+ I E LT +E +E F+ LRG+P  + G + ++ I
Sbjct: 380 KNSIL-SDIHEVHQ---NMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAI 435

Query: 127 DLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158
             LGL +Y  + +G YSGGNKRKLSTAMALIG
Sbjct: 436 RKLGLVKYGEKYAGNYSGGNKRKLSTAMALIG 467

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291382853|ref|XP_002708179.1| PREDICTED: ATP-binding cassette, sub-family A member 1-like [Oryctolagus cuniculus]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 67   QNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWI 126
            +NS+L +NI  + Q    +GYCPQF+ I E LT +E +E F+ LRG+P  + G + ++ I
Sbjct: 1974 KNSIL-SNIHEVHQ---NMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAI 2029

Query: 127  DLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158
              LGL +Y  + +G YSGGNKRKLSTAMALIG
Sbjct: 2030 RKLGLVKYGEKYAGNYSGGNKRKLSTAMALIG 2061

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355567561|gb|EHH23902.1| ATP-binding cassette transporter 1 [Macaca mulatta] gi|355753139|gb|EHH57185.1| ATP-binding cassette transporter 1 [Macaca fascicularis] gi|383409531|gb|AFH27979.1| ATP-binding cassette sub-family A member 1 [Macaca mulatta]

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 67   QNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWI 126
            +NS+L +NI  + Q    +GYCPQF+ I E LT +E +E F+ LRG+P  + G + ++ I
Sbjct: 1974 KNSIL-SNIHEVHQ---NMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAI 2029

Query: 127  DLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158
              LGL +Y  + +G YSGGNKRKLSTAMALIG
Sbjct: 2030 RKLGLVKYGEKYAGNYSGGNKRKLSTAMALIG 2061

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
ZFIN|ZDB-GENE-050517-4	2350	abca4b "ATP-binding cassette,	0.679	0.051	0.415	3.8e-19
UNIPROTKB|O95477	2261	ABCA1 "ATP-binding cassette su	0.679	0.053	0.446	4.3e-19
ZFIN|ZDB-GENE-050517-3	2277	abca4a "ATP-binding cassette,	0.679	0.053	0.407	4.5e-19
UNIPROTKB|E1C619	2225	E1C619 "Uncharacterized protei	0.488	0.039	0.494	6.8e-19
UNIPROTKB|E1C2W8	2255	E1C2W8 "Uncharacterized protei	0.488	0.038	0.494	7.1e-19
UNIPROTKB|F1S539	2278	ABCA4 "Uncharacterized protein	0.685	0.053	0.403	7.2e-19
UNIPROTKB|F1N8D7	2277	ABCA4 "Uncharacterized protein	0.679	0.053	0.4	7.2e-19
RGD|631344	2201	Abca1 "ATP-binding cassette, s	0.679	0.054	0.430	8.4e-19
UNIPROTKB|F1LNL3	2258	Abca1 "Protein Abca1" [Rattus	0.679	0.053	0.430	8.9e-19
UNIPROTKB|F1LRX9	2258	Abca1 "Protein Abca1" [Rattus	0.679	0.053	0.430	8.9e-19

ZFIN|ZDB-GENE-050517-4 abca4b "ATP-binding cassette, sub-family A (ABC1), member 4b" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
 Identities = 54/130 (41%), Positives = 77/130 (59%)

Query:    30 ECFSALRGIPGVKSGPIIDYWIDLLGSA-IRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC 88
             ECF  L G+ G  +G    + + L G   +       A  S+L +NI+ + Q    +GYC
Sbjct:  2031 ECFGLL-GVNG--AGKTTTFKM-LTGDTDVTSGELSVAGYSIL-SNILDVHQ---NMGYC 2082

Query:    89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR 148
             PQF+ I+E LT +E L  ++ LRGIP  +   + ++ I  LGL+EY    +G YSGGNKR
Sbjct:  2083 PQFDAIDELLTGREHLYLYARLRGIPESEISRVAEWGIQKLGLSEYAGNCAGTYSGGNKR 2142

Query:   149 KLSTAMALIG 158
             KLSTA+A+IG
Sbjct:  2143 KLSTAIAMIG 2152

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|O95477 ABCA1 "ATP-binding cassette sub-family A member 1" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
 Identities = 58/130 (44%), Positives = 77/130 (59%)

Query:    30 ECFSALRGIPGV-KSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC 88
             ECF  L G+ G  KS        D   +  R   F   +NS+L +NI  + Q    +GYC
Sbjct:  1940 ECFGLL-GVNGAGKSSTFKMLTGDT--TVTRGDAF-LNKNSIL-SNIHEVHQ---NMGYC 1991

Query:    89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR 148
             PQF+ I E LT +E +E F+ LRG+P  + G + ++ I  LGL +Y  + +G YSGGNKR
Sbjct:  1992 PQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSGGNKR 2051

Query:   149 KLSTAMALIG 158
             KLSTAMALIG
Sbjct:  2052 KLSTAMALIG 2061

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=TAS

GO:0010887 "negative regulation of cholesterol storage" evidence=TAS

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IDA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0033700 "phospholipid efflux" evidence=IDA;IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IC

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IC

GO:0043691 "reverse cholesterol transport" evidence=IMP

GO:0019905 "syntaxin binding" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0008509 "anion transmembrane transporter activity" evidence=ISS

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0016197 "endosomal transport" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0007040 "lysosome organization" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IMP

GO:0033344 "cholesterol efflux" evidence=IMP;IDA

GO:0017127 "cholesterol transporter activity" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0060155 "platelet dense granule organization" evidence=IMP

GO:0050702 "interleukin-1 beta secretion" evidence=IMP

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IMP

GO:0034186 "apolipoprotein A-I binding" evidence=IPI

GO:0031267 "small GTPase binding" evidence=IPI

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEP

GO:0034616 "response to laminar fluid shear stress" evidence=IEP

GO:0034380 "high-density lipoprotein particle assembly" evidence=IMP

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=IDA

ZFIN|ZDB-GENE-050517-3 abca4a "ATP-binding cassette, sub-family A (ABC1), member 4a" [Danio rerio (taxid:7955)]

 Score = 210 (79.0 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
 Identities = 53/130 (40%), Positives = 77/130 (59%)

Query:    30 ECFSALRGIPGVKSGPIIDYWIDLLGSA-IRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC 88
             ECF  L G+ G  +G    + + L G   +       A  S+L TNI+ + Q    +GYC
Sbjct:  1962 ECFGLL-GVNG--AGKTTTFKM-LTGDIDVTSGEADVAGYSIL-TNILDVHQ---NMGYC 2013

Query:    89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR 148
             PQF+ I++ LT +E L  ++ LRG+P  +   + ++ I  LGL+EY    +G YSGGNKR
Sbjct:  2014 PQFDAIDDLLTGREHLHLYARLRGVPESEISRVAEWGIQKLGLSEYAGCTAGTYSGGNKR 2073

Query:   149 KLSTAMALIG 158
             KLSTA+A+IG
Sbjct:  2074 KLSTAIAMIG 2083

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1C619 E1C619 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 210 (79.0 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
 Identities = 45/91 (49%), Positives = 63/91 (69%)

Query:    68 NSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWID 127
             NS+L +NI  + Q    +GYCPQF+ +NE LT +E LE F+ LRG+P  +   + ++ I 
Sbjct:  1939 NSIL-SNIQEVHQ---NMGYCPQFDAVNELLTGREHLEFFALLRGVPEKEVCKVGEWAIR 1994

Query:   128 LLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158
              LGL +Y  + +G YSGGN+RKLSTA+ALIG
Sbjct:  1995 KLGLVKYGEKYAGNYSGGNRRKLSTAIALIG 2025

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1C2W8 E1C2W8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 210 (79.0 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
 Identities = 45/91 (49%), Positives = 63/91 (69%)

Query:    68 NSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWID 127
             NS+L +NI  + Q    +GYCPQF+ +NE LT +E LE F+ LRG+P  +   + ++ I 
Sbjct:  1969 NSIL-SNIQEVHQ---NMGYCPQFDAVNELLTGREHLEFFALLRGVPEKEVCKVGEWAIR 2024

Query:   128 LLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158
              LGL +Y  + +G YSGGN+RKLSTA+ALIG
Sbjct:  2025 KLGLVKYGEKYAGNYSGGNRRKLSTAIALIG 2055

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

UNIPROTKB|F1S539 ABCA4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 211 (79.3 bits), Expect = 7.2e-19, Sum P(2) = 7.2e-19
 Identities = 52/129 (40%), Positives = 74/129 (57%)

Query:    30 ECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP 89
             ECF  L G+ G  +G    + + L G     S         ++TNI  + Q    +GYCP
Sbjct:  1960 ECFGLL-GVNG--AGKTTTFKM-LTGDTTVTSGDATVAGKSILTNIADVHQ---SMGYCP 2012

Query:    90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK 149
             QF+ I++ LT +E L  ++ LRG+P  +   + D+ I  LGL+ Y   ++G YSGGNKRK
Sbjct:  2013 QFDAIDDLLTGREHLHLYARLRGVPAEEIKRVTDWSIQSLGLSLYADCLAGTYSGGNKRK 2072

Query:   150 LSTAMALIG 158
             LSTA+ALIG
Sbjct:  2073 LSTAIALIG 2081

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1N8D7 ABCA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 7.2e-19, Sum P(2) = 7.2e-19
 Identities = 52/130 (40%), Positives = 78/130 (60%)

Query:    30 ECFSALRGIPGVKSGPIIDYWIDLLGSA-IRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC 88
             ECF  L G+ G  +G    + + L G   +       A NS+L T+I ++ Q    +GYC
Sbjct:  1960 ECFGLL-GVNG--AGKTTTFKM-LTGDTEVTSGDAVVAGNSIL-THISNVHQ---NMGYC 2011

Query:    89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR 148
             PQF+ +++ LT +E L  ++ LRG+P  +   + ++ I  LGL  Y  +++G YSGGNKR
Sbjct:  2012 PQFDALDDLLTGREHLYLYARLRGVPAEEIKRVAEWGIQKLGLPMYADQLAGTYSGGNKR 2071

Query:   149 KLSTAMALIG 158
             KLSTA+ALIG
Sbjct:  2072 KLSTAIALIG 2081

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

RGD|631344 Abca1 "ATP-binding cassette, subfamily A (ABC1), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 216 (81.1 bits), Expect = 8.4e-19, Sum P(2) = 8.4e-19
 Identities = 56/130 (43%), Positives = 79/130 (60%)

Query:    30 ECFSALRGIPGVKSGPIIDYWIDLLG-SAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC 88
             ECF  L G+ G  +G    + + L G +A+        +NS+L +NI  + Q    +GYC
Sbjct:  1880 ECFGLL-GVNG--AGKTSTFKM-LTGDTAVTRGDALLNKNSIL-SNIHEVHQ---NMGYC 1931

Query:    89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR 148
             PQF+ I E LT +E LE F+ LRG+P  + G + ++ I  LGL +Y  + +  YSGGNKR
Sbjct:  1932 PQFDAITELLTGREHLEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSGGNKR 1991

Query:   149 KLSTAMALIG 158
             KLSTA+ALIG
Sbjct:  1992 KLSTAIALIG 2001

GO:0002790 "peptide secretion" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006497 "protein lipidation" evidence=ISO

GO:0006911 "phagocytosis, engulfment" evidence=ISO

GO:0007040 "lysosome organization" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0008203 "cholesterol metabolic process" evidence=ISO

GO:0008509 "anion transmembrane transporter activity" evidence=ISO

GO:0009986 "cell surface" evidence=IDA

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISO

GO:0015914 "phospholipid transport" evidence=IDA;TAS

GO:0016197 "endosomal transport" evidence=ISO

GO:0017127 "cholesterol transporter activity" evidence=ISO

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030301 "cholesterol transport" evidence=IMP;IDA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO

GO:0031267 "small GTPase binding" evidence=ISO

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO

GO:0033700 "phospholipid efflux" evidence=ISO

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034186 "apolipoprotein A-I binding" evidence=ISO

GO:0034188 "apolipoprotein A-I receptor activity" evidence=ISO

GO:0034380 "high-density lipoprotein particle assembly" evidence=ISO

GO:0034616 "response to laminar fluid shear stress" evidence=ISO

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=ISO

GO:0042157 "lipoprotein metabolic process" evidence=ISO

GO:0042158 "lipoprotein biosynthetic process" evidence=ISO;IMP

GO:0042493 "response to drug" evidence=IEP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IDA;TAS

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043691 "reverse cholesterol transport" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045332 "phospholipid translocation" evidence=ISO

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0050702 "interleukin-1 beta secretion" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=ISO

GO:0060155 "platelet dense granule organization" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=ISO

GO:0071300 "cellular response to retinoic acid" evidence=ISO

GO:0071397 "cellular response to cholesterol" evidence=IEP

GO:0034364 "high-density lipoprotein particle" evidence=IDA

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=ISO

UNIPROTKB|F1LNL3 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 216 (81.1 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
 Identities = 56/130 (43%), Positives = 79/130 (60%)

Query:    30 ECFSALRGIPGVKSGPIIDYWIDLLG-SAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC 88
             ECF  L G+ G  +G    + + L G +A+        +NS+L +NI  + Q    +GYC
Sbjct:  1937 ECFGLL-GVNG--AGKTSTFKM-LTGDTAVTRGDALLNKNSIL-SNIHEVHQ---NMGYC 1988

Query:    89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR 148
             PQF+ I E LT +E LE F+ LRG+P  + G + ++ I  LGL +Y  + +  YSGGNKR
Sbjct:  1989 PQFDAITELLTGREHLEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSGGNKR 2048

Query:   149 KLSTAMALIG 158
             KLSTA+ALIG
Sbjct:  2049 KLSTAIALIG 2058

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1LRX9 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 216 (81.1 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
 Identities = 56/130 (43%), Positives = 79/130 (60%)

Query:    30 ECFSALRGIPGVKSGPIIDYWIDLLG-SAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC 88
             ECF  L G+ G  +G    + + L G +A+        +NS+L +NI  + Q    +GYC
Sbjct:  1937 ECFGLL-GVNG--AGKTSTFKM-LTGDTAVTRGDALLNKNSIL-SNIHEVHQ---NMGYC 1988

Query:    89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR 148
             PQF+ I E LT +E LE F+ LRG+P  + G + ++ I  LGL +Y  + +  YSGGNKR
Sbjct:  1989 PQFDAITELLTGREHLEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSGGNKR 2048

Query:   149 KLSTAMALIG 158
             KLSTA+ALIG
Sbjct:  2049 KLSTAIALIG 2058

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O95477	ABCA1_HUMAN	No assigned EC number	0.5108	0.4943	0.0389	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	178
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	6e-24
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-20
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	3e-17
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-13
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-12
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	7e-10
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	4e-07
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	5e-07
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-06
pfam00005	119	pfam00005, ABC_tran, ABC transporter	4e-06
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	5e-06
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	5e-06
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	6e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	7e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-05
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	7e-05
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	1e-04
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-04
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	3e-04
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	4e-04
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	4e-04
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	5e-04
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	0.001
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	0.001
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	0.002
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	0.002
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	0.003
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	0.004

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 93.0 bits (232), Expect = 6e-24
 Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 71  LMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 130
           + T+     Q    +GYCPQF+ + + LT +E L  ++ L+G+P  +    ++  + +LG
Sbjct: 66  IRTDRKAARQS---LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLG 122

Query: 131 LTEYRHRVSGRYSGGNKRKLSTAMALIGD 159
           LT+  ++ +   SGG KRKLS A+ALIG 
Sbjct: 123 LTDKANKRARTLSGGMKRKLSLAIALIGG 151

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 86.6 bits (214), Expect = 3e-20
 Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 7/129 (5%)

Query: 30   ECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP 89
            ECF    G+ GV        +  L G     S         ++TNI  + Q    +GYCP
Sbjct: 1966 ECF----GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQ---NMGYCP 2018

Query: 90   QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK 149
            QF+ I++ LT +E L  ++ LRG+P  +   + ++ I  LGL+ Y  R++G YSGGNKRK
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRK 2078

Query: 150  LSTAMALIG 158
            LSTA+ALIG
Sbjct: 2079 LSTAIALIG 2087

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           IGY PQ   +   LT +E LE F+ L G+   ++   I+  ++L GL +  ++     SG
Sbjct: 80  IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSG 139

Query: 145 GNKRKLSTAMALIGD 159
           G K++LS A+AL+ D
Sbjct: 140 GMKQRLSIALALLHD 154

Length = 293

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 26/75 (34%), Positives = 43/75 (57%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           IGY PQ  G+  + T +E L+  + L+GIP  +    +D  ++L+ L +   +  G  SG
Sbjct: 74  IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSG 133

Query: 145 GNKRKLSTAMALIGD 159
           G +R++  A AL+GD
Sbjct: 134 GMRRRVGIAQALVGD 148

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 26/73 (35%), Positives = 39/73 (53%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           IG   Q   +++ LT  E L   + L G+PG +    ID  +D +GL E   R+   YSG
Sbjct: 75  IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSG 134

Query: 145 GNKRKLSTAMALI 157
           G +R+L  A +L+
Sbjct: 135 GMRRRLEIARSLV 147

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 28/77 (36%), Positives = 41/77 (53%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           IG  PQ+  ++E LT +E LE    L G+P  ++    +  ++L  L E   R  G YSG
Sbjct: 68  IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSG 127

Query: 145 GNKRKLSTAMALIGDRD 161
           G +R+L  A +LI   D
Sbjct: 128 GMRRRLDIAASLIHQPD 144

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 25/81 (30%), Positives = 43/81 (53%)

Query: 79  FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRV 138
            +    +G+     G+ + LTA+E LE F+ L G+ G +    ++   D LG+ E   R 
Sbjct: 74  AEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRR 133

Query: 139 SGRYSGGNKRKLSTAMALIGD 159
            G +S G ++K++ A AL+ D
Sbjct: 134 VGGFSTGMRQKVAIARALVHD 154

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 26/76 (34%), Positives = 37/76 (48%)

Query: 84  GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYS 143
            IG      G+   LTA+E L+ F+ L G+   +    I      L L EY  R  G +S
Sbjct: 76  KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFS 135

Query: 144 GGNKRKLSTAMALIGD 159
            G K+K++ A AL+ D
Sbjct: 136 TGMKQKVAIARALVHD 151

Length = 245

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 29/46 (63%)

Query: 10  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 55
           +GYCPQF+ + + LT +E L  ++ L+G+P  +    ++  + +LG
Sbjct: 77  LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLG 122

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 72  MTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPI---IDYWIDL 128
            T +         IG   Q   +   LT +E L          G++        +  ++ 
Sbjct: 25  GTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL--------FFGLRDKEADARAEEALER 76

Query: 129 LGLTEYRHRVSGR-YSGGNKRKLSTAMALIGDRD 161
           +GL ++  R      SGG K++++ A AL+    
Sbjct: 77  VGLPDFLDREPVGTLSGGQKQRVAIARALLKKPK 110

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 22/75 (29%), Positives = 40/75 (53%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           IGY P+  G+   +   + L   + L+G+   ++   ID W++ L L+EY ++     S 
Sbjct: 72  IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSK 131

Query: 145 GNKRKLSTAMALIGD 159
           GN++K+    A+I D
Sbjct: 132 GNQQKVQFIAAVIHD 146

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 21/74 (28%), Positives = 35/74 (47%)

Query: 84  GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYS 143
           GIGY PQ   I   LT +E +     +RG+   +    ++  ++   +T  R   +   S
Sbjct: 76  GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLS 135

Query: 144 GGNKRKLSTAMALI 157
           GG +R++  A AL 
Sbjct: 136 GGERRRVEIARALA 149

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 93  GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLST 152
           G   +LTA+E L   + L GI   K    ID  +D++GL +   +    +S G K++L  
Sbjct: 82  GFYPNLTARENLRLLARLLGIR--KK--RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGI 137

Query: 153 AMALIGDRD 161
           A+AL+G+ D
Sbjct: 138 ALALLGNPD 146

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query: 85   IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
            +G CPQ N +  HLT  E +  ++ L+G    ++   ++  ++  GL   R+  +   SG
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSG 1064

Query: 145  GNKRKLSTAMALIGD 159
            G +RKLS A+A +GD
Sbjct: 1065 GMQRKLSVAIAFVGD 1079

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 10   IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 55
            +GYCPQF+ I++ LT +E L  ++ LRG+P  +   + ++ I  LG
Sbjct: 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLG 2059

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 10  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 55
           IGY PQ   +   LT +E LE F+ L G+   ++   I+  ++L G
Sbjct: 80  IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFG 125

Length = 293

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 38/73 (52%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           IGY P+  G+   +T ++ L+  + L+G+P  +    +  W++ L +   + +     S 
Sbjct: 74  IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSK 133

Query: 145 GNKRKLSTAMALI 157
           GN++K+    A+I
Sbjct: 134 GNQQKIQFISAVI 146

Length = 300

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 22/75 (29%), Positives = 41/75 (54%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           IGY P+ N +   +  +E L+  + + G+ G      ++  I+L+GL   +H+  G+ S 
Sbjct: 77  IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSK 136

Query: 145 GNKRKLSTAMALIGD 159
           G ++++  A ALI D
Sbjct: 137 GYRQRVGLAQALIHD 151

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 83  SGIGYCPQFNGINEHLTAQEMLEC-FSALRGIPGVKSGPIIDYWIDLLG-LTEYRHRVSG 140
           +GI Y PQ   I   LT +E L    +AL      +S  I D   +L   L E   R  G
Sbjct: 75  AGIAYVPQGREIFPRLTVEENLLTGLAALPR----RSRKIPDEIYELFPVLKEMLGRRGG 130

Query: 141 RYSGGNKRKLSTAMALIGD 159
             SGG +++L+ A AL+  
Sbjct: 131 DLSGGQQQQLAIARALVTR 149

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 19/76 (25%), Positives = 37/76 (48%)

Query: 82  LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGR 141
           L+ +G   Q   ++  L+ ++ L   +AL G+   ++   I   +  LGL E        
Sbjct: 73  LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRE 132

Query: 142 YSGGNKRKLSTAMALI 157
            +GG++R++  A AL+
Sbjct: 133 LNGGHRRRVEIARALL 148

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 122 IDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159
            +  ++ +GL +   R +G  S G +R+L  A AL  D
Sbjct: 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 38.5 bits (91), Expect = 5e-04
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 36/75 (48%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           IGY P+   + E+LT +E L                                    + SG
Sbjct: 75  IGYLPEEPSLYENLTVRENL------------------------------------KLSG 98

Query: 145 GNKRKLSTAMALIGD 159
           G K++L+ A AL+ D
Sbjct: 99  GMKQRLALAQALLHD 113

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 85  IGYCPQFNGINEHLTAQEMLE----CFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSG 140
           + Y PQ       LT  E++         L G P  +   I++  ++LLGL     R   
Sbjct: 78  LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD 137

Query: 141 RYSGGNKRKLSTAMALIGD 159
             SGG ++++  A AL  +
Sbjct: 138 ELSGGERQRVLIARALAQE 156

Length = 258

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 125 WIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL 156
            ++ +GL E   R +G  S G +R+L  A AL
Sbjct: 133 LLEFVGLGELADRPAGNLSYGQQRRLEIARAL 164

Length = 250

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 83  SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGL-TEYRHRVSGR 141
           + IG  PQF+ ++   T +E L  F    G+   +   +I   ++   L ++   RVS  
Sbjct: 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVS-D 172

Query: 142 YSGGNKRKLSTAMALIGD 159
            SGG KR+L+ A ALI D
Sbjct: 173 LSGGMKRRLTLARALIND 190

Length = 340

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 77  HLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPII-----DYWIDLLGL 131
             FQ    + Y  Q + +   LT +E L  ++A+  +P   S  I      D  +  L L
Sbjct: 77  DQFQKC--VAYVRQDDILLPGLTVRETLT-YTAILRLPRKSSDAIRKKRVEDVLLRDLAL 133

Query: 132 TEYRHRVSGRYSGGNKRKLSTAMALIGD 159
           T     +    SGG +R++S A+ L+ D
Sbjct: 134 TRIGGNLVKGISGGERRRVSIAVQLLWD 161

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 10  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 55
           IGY PQ  G+  + T +E L+  + L+GIP  +    +D  ++L+ 
Sbjct: 74  IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 22/77 (28%), Positives = 36/77 (46%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           +G  PQF+ ++   T +E L  F    G+    +  ++   ++   L        G  SG
Sbjct: 82  VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSG 141

Query: 145 GNKRKLSTAMALIGDRD 161
           G KR+L+ A AL+ D D
Sbjct: 142 GMKRRLTLARALVNDPD 158

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
KOG0058|consensus	716		100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
KOG0055|consensus	1228		100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.98
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.98
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.98
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.98
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.98
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.98
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.98
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.98
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.98
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.98
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.98
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.98
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.98
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.98
COG4988	559	CydD ABC-type transport system involved in cytochr	99.97
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.97
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.97
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.97
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.97
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.97
PRK10938	490	putative molybdenum transport ATP-binding protein	99.97
cd03246	173	ABCC_Protease_Secretion This family represents the	99.97
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.97
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.97
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.97
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.97
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.97
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.97
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.97
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.97
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.97
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.97
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.97
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.97
COG4172	534	ABC-type uncharacterized transport system, duplica	99.97
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.97
KOG0059|consensus	885		99.97
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.97
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.97
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.97
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.97
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.97
KOG0057|consensus	591		99.97
PRK13409	590	putative ATPase RIL; Provisional	99.97
KOG0055|consensus	1228		99.97
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.97
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.97
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.97
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.97
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.97
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.97
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.97
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.97
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.97
PLN03232	1495	ABC transporter C family member; Provisional	99.97
PLN03130	1622	ABC transporter C family member; Provisional	99.97
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.97
PLN03140	1470	ABC transporter G family member; Provisional	99.97
PRK11147	635	ABC transporter ATPase component; Reviewed	99.97
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.97
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.97
KOG0061|consensus	613		99.97
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.97
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.96
PTZ00243	1560	ABC transporter; Provisional	99.96
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.96
COG4172	534	ABC-type uncharacterized transport system, duplica	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
COG4987	573	CydC ABC-type transport system involved in cytochr	99.96
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.96
PRK13409	590	putative ATPase RIL; Provisional	99.96
PLN03140	1470	ABC transporter G family member; Provisional	99.96
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.96
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.96
PLN03073	718	ABC transporter F family; Provisional	99.96
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.96
PRK11147	635	ABC transporter ATPase component; Reviewed	99.96
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.95
COG0488	530	Uup ATPase components of ABC transporters with dup	99.95
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.95
KOG0056|consensus	790		99.95
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.95
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.95
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.94
PLN03232	1495	ABC transporter C family member; Provisional	99.94
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.94
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.94
PLN03130	1622	ABC transporter C family member; Provisional	99.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.94
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.94
PTZ00243	1560	ABC transporter; Provisional	99.94
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.93
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.93
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.93
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.92
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.92
COG0488	530	Uup ATPase components of ABC transporters with dup	99.92
PLN03073	718	ABC transporter F family; Provisional	99.92
KOG0054|consensus	1381		99.91
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.91
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.89
KOG0065|consensus	1391		99.89
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.89
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.88
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.88
KOG0054|consensus	1381		99.88
KOG0927|consensus	614		99.86
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.86
COG4178	604	ABC-type uncharacterized transport system, permeas	99.83
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.82
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.81
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.81
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.8
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.78
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.78
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.77
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.77
KOG0066|consensus	807		99.76
KOG0062|consensus	582		99.76
KOG0927|consensus	614		99.76
KOG0062|consensus	582		99.74
KOG0060|consensus	659		99.71
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.7
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.69
KOG0065|consensus	1391		99.68
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.68
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.67
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.56
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.52
KOG0064|consensus	728		99.51
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.49
KOG0066|consensus	807		99.48
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.46
KOG0063|consensus	592		99.44
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.43
KOG2355|consensus	291		99.4
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.4
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.39
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.39
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.35
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.35
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.34
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.32
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.29
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.27
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.14
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.1
KOG0063|consensus	592		98.96
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.94
PHA02562	562	46 endonuclease subunit; Provisional	98.9
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.9
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.89
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.88
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	98.81
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.79
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.77
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.75
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	98.75
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.74
PRK01156	895	chromosome segregation protein; Provisional	98.74
PRK10869	553	recombination and repair protein; Provisional	98.68
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.66
PRK03918	880	chromosome segregation protein; Provisional	98.65
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.62
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.48
PRK00064	361	recF recombination protein F; Reviewed	98.48
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.44
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.43
TIGR00611	365	recf recF protein. All proteins in this family for	98.42
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.39
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.36
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.34
PRK14079	349	recF recombination protein F; Provisional	98.29
cd01128	249	rho_factor Transcription termination factor rho is	98.26
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.16
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.14
PRK02224	880	chromosome segregation protein; Provisional	98.07
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.01
PRK06315	442	type III secretion system ATPase; Provisional	97.99
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.93
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	97.89
PRK13695	174	putative NTPase; Provisional	97.72
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	97.68
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.64
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.6
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	97.59
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.57
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.45
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	97.43
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.39
smart00382	148	AAA ATPases associated with a variety of cellular	97.29
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.23
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	97.14
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.06
PRK06067	234	flagellar accessory protein FlaH; Validated	97.05
PRK09825	176	idnK D-gluconate kinase; Provisional	96.95
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.93
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	96.88
PRK08149	428	ATP synthase SpaL; Validated	96.84
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	96.65
PRK07594	433	type III secretion system ATPase SsaN; Validated	96.49
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.48
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	96.44
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	96.44
PRK01889	356	GTPase RsgA; Reviewed	96.37
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	96.33
COG3910	233	Predicted ATPase [General function prediction only	96.33
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.31
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.29
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.26
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	96.26
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.22
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.2
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.17
PRK09099	441	type III secretion system ATPase; Provisional	96.16
PRK10416	318	signal recognition particle-docking protein FtsY;	96.11
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.1
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	96.01
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	95.96
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	95.94
PRK00098	298	GTPase RsgA; Reviewed	95.82
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	95.78
PRK09862	506	putative ATP-dependent protease; Provisional	95.72
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	95.6
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	95.51
PLN02318	656	phosphoribulokinase/uridine kinase	95.36
PRK11545	163	gntK gluconate kinase 1; Provisional	95.35
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.3
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	95.29
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	95.23
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	95.16

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-51  Score=316.37  Aligned_cols=159  Identities=16%  Similarity=0.154  Sum_probs=148.0

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc---cHHhhcc
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM---HLFQYLS   83 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~---~~~~~~~   83 (178)
                      .+.+|...+|++||++|.+||    ..+|+||||||||       |+++|++++.+|++|.|+++|.++.   +..++|+
T Consensus         9 ~K~fg~~~VLkgi~l~v~~Ge----vv~iiGpSGSGKS-------TlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~   77 (240)
T COG1126           9 SKSFGDKEVLKGISLSVEKGE----VVVIIGPSGSGKS-------TLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR   77 (240)
T ss_pred             eEEeCCeEEecCcceeEcCCC----EEEEECCCCCCHH-------HHHHHHHCCcCCCCceEEECCEeccchhhHHHHHH
Confidence            456788899999999999999    7779999999999       9999999999999999999998764   5678899


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHH-HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFS-ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      .+|+|||+.++||++||.||+.... ...+.++.++++++.++|+++||.+.++.+|.+|||||||||+|||||+++|++
T Consensus        78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v  157 (240)
T COG1126          78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV  157 (240)
T ss_pred             hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence            9999999999999999999999865 456788888899999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYN  176 (178)
Q Consensus       163 lllDEPt~gLD~~~  176 (178)
                      ++||||||+|||..
T Consensus       158 mLFDEPTSALDPEl  171 (240)
T COG1126         158 MLFDEPTSALDPEL  171 (240)
T ss_pred             EeecCCcccCCHHH
Confidence            99999999999974

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.3e-48  Score=310.01  Aligned_cols=162  Identities=19%  Similarity=0.194  Sum_probs=150.1

Q ss_pred             hhhh-ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----H
Q psy860            5 QYLS-GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----L   78 (178)
Q Consensus         5 ~~~~-~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~   78 (178)
                      .|.. +.+..++++||||+|++||    ..+|+|.||+|||       ||+++++++..|++|.|.++|+++..     +
T Consensus        10 ~~~~~~~~~~~al~~vsL~I~~Ge----I~GIIG~SGAGKS-------TLiR~iN~Le~PtsG~v~v~G~di~~l~~~~L   78 (339)
T COG1135          10 TFGQTGTGTVTALDDVSLEIPKGE----IFGIIGYSGAGKS-------TLLRLINLLERPTSGSVFVDGQDLTALSEAEL   78 (339)
T ss_pred             eeccCCCCceeeeccceEEEcCCc----EEEEEcCCCCcHH-------HHHHHHhccCCCCCceEEEcCEecccCChHHH
Confidence            4544 4445789999999999999    5559999999999       99999999999999999999988764     4


Q ss_pred             HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           79 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        79 ~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .+.|+.||++||++++....||++|+.|+..+.+.++.+..+++.++++.+||++.++++|.+|||||||||+|||||+.
T Consensus        79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~  158 (339)
T COG1135          79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN  158 (339)
T ss_pred             HHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc
Confidence            57889999999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++|++|||||+|||.++
T Consensus       159 ~P~iLL~DEaTSALDP~TT  177 (339)
T COG1135         159 NPKILLCDEATSALDPETT  177 (339)
T ss_pred             CCCEEEecCccccCChHHH
Confidence            9999999999999999864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-46  Score=295.21  Aligned_cols=154  Identities=20%  Similarity=0.228  Sum_probs=142.7

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEec
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP   89 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~   89 (178)
                      +|.+.||+||||+|.+||    |.+|+||||||||       ||++.+.|+.+|++|+|.++|+.+..+   ...++|||
T Consensus        13 f~~~~vl~~i~L~v~~GE----fvsilGpSGcGKS-------TLLriiAGL~~p~~G~V~~~g~~v~~p---~~~~~~vF   78 (248)
T COG1116          13 FGGVEVLEDINLSVEKGE----FVAILGPSGCGKS-------TLLRLIAGLEKPTSGEVLLDGRPVTGP---GPDIGYVF   78 (248)
T ss_pred             eCceEEeccceeEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCcccCCC---CCCEEEEe
Confidence            344789999999999999    9999999999999       999999999999999999999987443   44799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |++.++|.+||.||+.+.....+.++.+.+++++++|+.+||....+++|.+|||||||||+|||||+.+|++|+||||+
T Consensus        79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF  158 (248)
T COG1116          79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF  158 (248)
T ss_pred             ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999999999999999888877777777789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      ++||..++
T Consensus       159 gALDalTR  166 (248)
T COG1116         159 GALDALTR  166 (248)
T ss_pred             chhhHHHH
Confidence            99998654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-46  Score=293.69  Aligned_cols=160  Identities=24%  Similarity=0.268  Sum_probs=150.7

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccc
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSG   84 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~   84 (178)
                      ++.++...|++|+||+|++||    |..++|+||||||       |+++.++++.+|++|+|.++|+++.+  ..++|++
T Consensus         8 sk~y~~~~av~~v~l~I~~ge----f~vliGpSGsGKT-------TtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~   76 (309)
T COG1125           8 SKRYGNKKAVDDVNLTIEEGE----FLVLIGPSGSGKT-------TTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK   76 (309)
T ss_pred             ehhcCCceeeeeeeEEecCCe----EEEEECCCCCcHH-------HHHHHHhcccCCCCceEEECCeecccCCHHHHHHh
Confidence            345567789999999999999    8889999999999       99999999999999999999999987  5688999


Q ss_pred             eEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC--ccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           85 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT--EYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        85 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      ||||-|..++||++||.||+...+.+.+.++++.+++++++++.+||+  ++++++|++|||||||||.+||||+.+|++
T Consensus        77 IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i  156 (309)
T COG1125          77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI  156 (309)
T ss_pred             hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe
Confidence            999999999999999999999999888888888889999999999997  599999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      +++|||+++|||.+|
T Consensus       157 lLMDEPFgALDpI~R  171 (309)
T COG1125         157 LLMDEPFGALDPITR  171 (309)
T ss_pred             EeecCCccccChhhH
Confidence            999999999999876

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=9.9e-45  Score=284.64  Aligned_cols=161  Identities=19%  Similarity=0.208  Sum_probs=141.9

Q ss_pred             hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hh
Q psy860            6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQ   80 (178)
Q Consensus         6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~   80 (178)
                      |..+-...++|++|||+|++||    |.+|.||||||||       ||+..+.++.+|++|.+.++|.++..+     .+
T Consensus        11 y~~~~~~~~~L~~v~l~i~~Ge----~vaI~GpSGSGKS-------TLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~   79 (226)
T COG1136          11 YGLGGEKVEALKDVNLEIEAGE----FVAIVGPSGSGKS-------TLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK   79 (226)
T ss_pred             eccCCcceEecccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence            5444444789999999999999    9999999999999       999999999999999999999887643     33


Q ss_pred             h-ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-CcCCCCChHHHHHHHHHHHHhC
Q psy860           81 Y-LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-RVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        81 ~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      + ++.||||||+.++.|++||.||+.++..+.+.+.....+++.++++.+|+.+..+ ++|.+|||||||||+|||||+.
T Consensus        80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~  159 (226)
T COG1136          80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN  159 (226)
T ss_pred             HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence            4 4679999999999999999999999887776654455677889999999996666 8899999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++.||||.+||..+.
T Consensus       160 ~P~iilADEPTgnLD~~t~  178 (226)
T COG1136         160 NPKIILADEPTGNLDSKTA  178 (226)
T ss_pred             CCCeEEeeCccccCChHHH
Confidence            9999999999999998753

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.7e-45  Score=302.78  Aligned_cols=158  Identities=21%  Similarity=0.232  Sum_probs=149.3

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEe
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC   88 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v   88 (178)
                      .+|...++++||++|+.||    |.+++||||||||       |+++.+.|+.+|++|+|.++|++++++...+|+|++|
T Consensus        12 ~yg~~~~l~~i~l~i~~Ge----f~vllGPSGcGKS-------TlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV   80 (338)
T COG3839          12 SFGSFEVLKDVNLDIEDGE----FVVLLGPSGCGKS-------TLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV   80 (338)
T ss_pred             EcCCceeeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence            3444348999999999999    9999999999999       9999999999999999999999999977777899999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      ||++.+||+|||+||+.|..+..+.++.+.+++++++.+.++|.++.+++|.+|||||||||+|||||+.+|++++||||
T Consensus        81 FQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP  160 (338)
T COG3839          81 FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP  160 (338)
T ss_pred             eCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      +|.||.+.|
T Consensus       161 lSnLDa~lR  169 (338)
T COG3839         161 LSNLDAKLR  169 (338)
T ss_pred             hhHhhHHHH
Confidence            999998643

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-45  Score=303.28  Aligned_cols=159  Identities=19%  Similarity=0.211  Sum_probs=147.1

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG   86 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig   86 (178)
                      .+.+|...+++|||++|++||    |.+++||||||||       |+++++.|+..|++|+|.++|+++.+....+|.||
T Consensus        12 ~k~yg~~~av~~isl~i~~Ge----f~~lLGPSGcGKT-------TlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig   80 (352)
T COG3842          12 SKSFGDFTAVDDISLDIKKGE----FVTLLGPSGCGKT-------TLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG   80 (352)
T ss_pred             eeecCCeeEEecceeeecCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence            355667799999999999999    9999999999999       99999999999999999999999999888888999


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           87 YCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      +|||++.+||+|||+||+.|..+..+. .+.+.++++.++++.++|.++++++|++|||||||||+|||||+.+|++|+|
T Consensus        81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL  160 (352)
T COG3842          81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL  160 (352)
T ss_pred             eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence            999999999999999999999885543 3345678999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCC
Q psy860          166 KLPFSSQNLYN  176 (178)
Q Consensus       166 DEPt~gLD~~~  176 (178)
                      |||.|+||.+-
T Consensus       161 DEPlSaLD~kL  171 (352)
T COG3842         161 DEPLSALDAKL  171 (352)
T ss_pred             cCcccchhHHH
Confidence            99999999754

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.6e-44  Score=282.60  Aligned_cols=160  Identities=18%  Similarity=0.169  Sum_probs=145.6

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hhh
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQY   81 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~   81 (178)
                      ..++|...+++||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|+++|+++.+.     .++
T Consensus        15 ~~~fG~~~Ild~v~l~V~~Ge----i~~iiGgSGsGKS-------tlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i   83 (263)
T COG1127          15 TKSFGDRVILDGVDLDVPRGE----ILAILGGSGSGKS-------TLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI   83 (263)
T ss_pred             eeecCCEEEecCceeeecCCc----EEEEECCCCcCHH-------HHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence            356788899999999999999    6779999999999       999999999999999999999998754     357


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      |+++|++||.-.+|..+||+||+.|+.+. ...+++..++.+..-|+.+||... .+++|++|||||++||+|||||+.+
T Consensus        84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald  163 (263)
T COG1127          84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD  163 (263)
T ss_pred             HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence            88999999999999999999999997654 356767777888889999999866 8999999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |+++++||||+||||.+.
T Consensus       164 Pell~~DEPtsGLDPI~a  181 (263)
T COG1127         164 PELLFLDEPTSGLDPISA  181 (263)
T ss_pred             CCEEEecCCCCCCCcchH
Confidence            999999999999999864

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=2.8e-44  Score=272.50  Aligned_cols=158  Identities=18%  Similarity=0.150  Sum_probs=148.1

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----H
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----F   79 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~   79 (178)
                      .|+.|   .+||+||||+|++||    |.=+.||||+|||       |+++.+.+..+|+.|+|+++|.++..+     .
T Consensus        10 ~Y~~g---~~aL~~vs~~i~~Ge----f~fl~GpSGAGKS-------TllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP   75 (223)
T COG2884          10 AYPGG---REALRDVSFHIPKGE----FVFLTGPSGAGKS-------TLLKLIYGEERPTRGKILVNGHDLSRLKGREIP   75 (223)
T ss_pred             hcCCC---chhhhCceEeecCce----EEEEECCCCCCHH-------HHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence            45544   579999999999999    7889999999999       999999999999999999999998764     4


Q ss_pred             hhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           80 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        80 ~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      -+|++||+|||+..+.++.||.||++++....+.+..+.++++.++|+.+||.+.++..|.+|||||||||+||||++.+
T Consensus        76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~  155 (223)
T COG2884          76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ  155 (223)
T ss_pred             hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence            57899999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~  176 (178)
                      |++|+.||||..|||..
T Consensus       156 P~vLlADEPTGNLDp~~  172 (223)
T COG2884         156 PAVLLADEPTGNLDPDL  172 (223)
T ss_pred             CCeEeecCCCCCCChHH
Confidence            99999999999999964

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=6.5e-44  Score=284.95  Aligned_cols=155  Identities=20%  Similarity=0.214  Sum_probs=139.4

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEec
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCP   89 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~   89 (178)
                      ..++++||||+|++||    +.+|+||||||||       ||+++++|+.+|++|+|.++|+++..  .+++.+.++|||
T Consensus        14 ~~~il~~ls~~i~~G~----i~~iiGpNG~GKS-------TLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp   82 (258)
T COG1120          14 GKPILDDLSFSIPKGE----ITGILGPNGSGKS-------TLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP   82 (258)
T ss_pred             CeeEEecceEEecCCc----EEEEECCCCCCHH-------HHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence            4579999999999999    8889999999999       99999999999999999999999976  467888999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHH----hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           90 QFNGINEHLTAQEMLECFSA----LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      |.+...+.+||+|.+.+...    ++....+++.+.+.++|+.+++.+++++.+.+|||||||||.|||||+++|++|+|
T Consensus        83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL  162 (258)
T COG1120          83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL  162 (258)
T ss_pred             cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence            99988899999999987422    22333455666899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCC
Q psy860          166 KLPFSSQNLYNT  177 (178)
Q Consensus       166 DEPt~gLD~~~~  177 (178)
                      |||||+||+.++
T Consensus       163 DEPTs~LDi~~Q  174 (258)
T COG1120         163 DEPTSHLDIAHQ  174 (258)
T ss_pred             CCCccccCHHHH
Confidence            999999999764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-43  Score=277.24  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=142.0

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----HHhhccce
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----LFQYLSGI   85 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~~~~~~~i   85 (178)
                      +.+.+|+||||+|..||    |.+|+|++|+|||       ||+++++|+..|++|++.++|.++..     ++++|+.|
T Consensus        15 ~~~~aL~~Vnl~I~~GE----~VaiIG~SGaGKS-------TLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i   83 (258)
T COG3638          15 GGHQALKDVNLEINQGE----MVAIIGPSGAGKS-------TLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI   83 (258)
T ss_pred             CCceeeeeEeEEeCCCc----EEEEECCCCCcHH-------HHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
Confidence            44589999999999999    9999999999999       99999999999999999999988754     45778899


Q ss_pred             EEecCCCCCCCCCCHHHHHHHH--------HHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh
Q psy860           86 GYCPQFNGINEHLTAQEMLECF--------SALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~--------~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      ||+||.+++.+.++|.+|+..+        ..+.+...++++..+-++|+++|+.+.+.++.++|||||||||+|||||+
T Consensus        84 GmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~  163 (258)
T COG3638          84 GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV  163 (258)
T ss_pred             eeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh
Confidence            9999999999999999999763        23345666677888999999999999999999999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      ++|++++.|||+++|||.+.
T Consensus       164 Q~pkiILADEPvasLDp~~a  183 (258)
T COG3638         164 QQPKIILADEPVASLDPESA  183 (258)
T ss_pred             cCCCEEecCCcccccChhhH
Confidence            99999999999999999864

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-43  Score=279.65  Aligned_cols=152  Identities=20%  Similarity=0.247  Sum_probs=132.9

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC-
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN-   92 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~-   92 (178)
                      +||+||||+|++|+    |.+|+||||+|||       ||++.++|+.+|+.|+|.++|.+..+..+ +..||||||.. 
T Consensus        18 ~vl~~i~l~v~~G~----~~~iiGPNGaGKS-------TLlK~iLGll~p~~G~i~~~g~~~~~~~~-~~~IgYVPQ~~~   85 (254)
T COG1121          18 PVLEDISLSVEKGE----ITALIGPNGAGKS-------TLLKAILGLLKPSSGEIKIFGKPVRKRRK-RLRIGYVPQKSS   85 (254)
T ss_pred             eeeeccEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCcCCcceEEEcccccccccc-CCeEEEcCcccc
Confidence            59999999999999    8999999999999       99999999999999999999987755433 45799999965 


Q ss_pred             -CCCCCCCHHHHHHHHH--Hh--cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           93 -GINEHLTAQEMLECFS--AL--RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        93 -~l~~~ltv~e~l~~~~--~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                       ...+..||+|.+.+..  +.  .....+++++.++++|+.+|+.+++++.+++|||||+|||.|||||+++|++|+|||
T Consensus        86 ~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE  165 (254)
T COG1121          86 VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE  165 (254)
T ss_pred             cCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC
Confidence             4455789999998752  22  222344567899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|+|+.++
T Consensus       166 P~~gvD~~~~  175 (254)
T COG1121         166 PFTGVDVAGQ  175 (254)
T ss_pred             CcccCCHHHH
Confidence            9999999764

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-42  Score=268.42  Aligned_cols=156  Identities=20%  Similarity=0.185  Sum_probs=139.3

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHh
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQ   80 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~   80 (178)
                      .|-..||+|||+.|++++    ..|++||+|||||       |++++++++...     -+|+|.++|+++.+    ..+
T Consensus        17 Yg~~~aL~~i~l~i~~~~----VTAlIGPSGcGKS-------T~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~   85 (253)
T COG1117          17 YGDKHALKDINLDIPKNK----VTALIGPSGCGKS-------TLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE   85 (253)
T ss_pred             ECchhhhccCceeccCCc----eEEEECCCCcCHH-------HHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence            355689999999999999    7889999999999       999999999544     34999999999864    568


Q ss_pred             hccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHH
Q psy860           81 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMAL  156 (178)
Q Consensus        81 ~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL  156 (178)
                      +|++||+|||.|+.|| +|++||+.+..+..+...++..+.+++.|+...|+    +..++.+..||||||||++|||||
T Consensus        86 lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal  164 (253)
T COG1117          86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             HHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence            9999999999999988 99999999999988876667778899999999886    455677889999999999999999


Q ss_pred             hCCCCeEEeeCCCCCCCCCCC
Q psy860          157 IGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       157 ~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +.+|++|+||||||+|||.+.
T Consensus       165 Av~PeVlLmDEPtSALDPIsT  185 (253)
T COG1117         165 AVKPEVLLMDEPTSALDPIST  185 (253)
T ss_pred             hcCCcEEEecCcccccCchhH
Confidence            999999999999999999874

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1e-42  Score=285.33  Aligned_cols=160  Identities=24%  Similarity=0.292  Sum_probs=145.8

Q ss_pred             hhccC-ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccc
Q psy860            7 LSGIG-YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSG   84 (178)
Q Consensus         7 ~~~~~-~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~   84 (178)
                      .+.+| ..++|+||||+|++||    +.+++|+||||||       |++++++|+.+|++|+|.++|.+... ..++++.
T Consensus        11 ~k~~~~~~~~l~~vs~~i~~Ge----i~gllG~NGAGKT-------Tllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~   79 (293)
T COG1131          11 TKKYGGDKTALDGVSFEVEPGE----IFGLLGPNGAGKT-------TLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRR   79 (293)
T ss_pred             EEEeCCCCEEEeceeEEEcCCe----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhh
Confidence            34556 5789999999999999    7779999999999       99999999999999999999988754 5678889


Q ss_pred             eEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           85 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        85 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      +||+||++.+++.+|++|++.+++..++.+....+++++++++.++|.+..++++.+||+||||||.||+||+++|+++|
T Consensus        80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli  159 (293)
T COG1131          80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLI  159 (293)
T ss_pred             eEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999999998876554556789999999999987789999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+||||.++
T Consensus       160 LDEPt~GLDp~~~  172 (293)
T COG1131         160 LDEPTSGLDPESR  172 (293)
T ss_pred             ECCCCcCCCHHHH
Confidence            9999999999764

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.1e-43  Score=278.21  Aligned_cols=160  Identities=16%  Similarity=0.106  Sum_probs=147.8

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc---cHHh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM---HLFQ   80 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~---~~~~   80 (178)
                      |.|.++   .+++++|||+|++||    +.+|+|+||||||       ||++.++|+.+|++|.+.++|.++.   ...+
T Consensus        11 ~~y~~~---~~~l~~v~~~i~~Ge----~~~i~G~nGsGKS-------TL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~   76 (235)
T COG1122          11 FRYPGR---KAALKDVSLEIEKGE----RVLLIGPNGSGKS-------TLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE   76 (235)
T ss_pred             EEcCCC---ceeeeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence            567666   689999999999999    8889999999999       9999999999999999999999865   3678


Q ss_pred             hccceEEecCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           81 YLSGIGYCPQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        81 ~~~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      +++.+|||||+|. .+..-||.+.+.|.....+.+.++.++++.++++.+++.+++++.+.+|||||||||+||.+|+++
T Consensus        77 ~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~  156 (235)
T COG1122          77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG  156 (235)
T ss_pred             hhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC
Confidence            8999999999984 667789999999998888888778889999999999999999999999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|+||||||||||.++
T Consensus       157 P~iliLDEPta~LD~~~~  174 (235)
T COG1122         157 PEILLLDEPTAGLDPKGR  174 (235)
T ss_pred             CCEEEEcCCCCCCCHHHH
Confidence            999999999999999865

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.7e-43  Score=266.97  Aligned_cols=154  Identities=22%  Similarity=0.205  Sum_probs=145.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc-cHHhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM-HLFQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~-~~~~~~~~ig~v~Q~   91 (178)
                      +.+++||||+++.||    ..+|+|+||+||+       |+++.+..++.|++|.++++|-+.. ++..+|++||.++..
T Consensus        15 v~AvrdVSF~ae~Ge----i~GlLG~NGAGKT-------T~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e   83 (245)
T COG4555          15 VQAVRDVSFEAEEGE----ITGLLGENGAGKT-------TLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGE   83 (245)
T ss_pred             HhhhhheeEEeccce----EEEEEcCCCCCch-------hHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCC
Confidence            469999999999999    6669999999999       9999999999999999999999864 567889999999988


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      ..+|..+|++||+.||+.++++.+.+.+.++.++.+.++|.+++|+++.+||.||||||+|||||+++|++++|||||||
T Consensus        84 ~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sG  163 (245)
T COG4555          84 RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSG  163 (245)
T ss_pred             cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCC
Confidence            89999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||..++
T Consensus       164 LDi~~~  169 (245)
T COG4555         164 LDIRTR  169 (245)
T ss_pred             ccHHHH
Confidence            998764

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-42  Score=278.46  Aligned_cols=160  Identities=18%  Similarity=0.199  Sum_probs=142.6

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccc---ccccHHhhcc
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMT---NIMHLFQYLS   83 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~---~~~~~~~~~~   83 (178)
                      .+..|..++++|||++|+.||    ..|++||||||||       |+++++.|+..|++|.|.++|+   +..+.....+
T Consensus         9 ~~~~~~~~a~~di~l~i~~Ge----~vaLlGpSGaGKs-------TlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R   77 (345)
T COG1118           9 KKRFGAFGALDDISLDIKSGE----LVALLGPSGAGKS-------TLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR   77 (345)
T ss_pred             hhhcccccccccceeeecCCc----EEEEECCCCCcHH-------HHHHHHhCcCCCCCceEEECCEeccchhccchhhc
Confidence            345566789999999999999    8889999999999       9999999999999999999999   5544444457


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcC--CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRG--IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +||||||++.+|++|||.+|+.|....+.  .+..+.+.++.++|+.+.|+...+++|.+|||||||||++||||+.+|+
T Consensus        78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~  157 (345)
T COG1118          78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK  157 (345)
T ss_pred             ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence            89999999999999999999999876552  2345677789999999999999999999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|+||||+++||...+
T Consensus       158 vLLLDEPf~ALDa~vr  173 (345)
T COG1118         158 VLLLDEPFGALDAKVR  173 (345)
T ss_pred             eEeecCCchhhhHHHH
Confidence            9999999999998643

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.7e-42  Score=286.62  Aligned_cols=154  Identities=16%  Similarity=0.134  Sum_probs=139.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|+||||+|++||    +.+|+|+||||||       ||+++++|+.+|++|++.++|.++...     ...|++|||
T Consensus        18 ~~~L~~vsl~i~~Ge----i~gIiG~sGaGKS-------TLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~   86 (343)
T TIGR02314        18 IQALNNVSLHVPAGQ----IYGVIGASGAGKS-------TLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGM   86 (343)
T ss_pred             eEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEE
Confidence            479999999999999    7889999999999       999999999999999999999987642     235778999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +||++.+++.+||.||+.++....+.+..+.++++.++++.+|+.+..++++.+|||||||||+|||||+++|++|+|||
T Consensus        87 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDE  166 (343)
T TIGR02314        87 IFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDE  166 (343)
T ss_pred             EECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            99999999999999999987665555444556778999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      |||+|||.++
T Consensus       167 Pts~LD~~t~  176 (343)
T TIGR02314       167 ATSALDPATT  176 (343)
T ss_pred             CcccCCHHHH
Confidence            9999999764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.5e-42  Score=286.26  Aligned_cols=155  Identities=17%  Similarity=0.179  Sum_probs=140.0

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      ..++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++.+....++.||||||+
T Consensus        16 ~~~~l~~vsl~i~~Ge----~~~llG~sGsGKS-------TLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~   84 (356)
T PRK11650         16 KTQVIKGIDLDVADGE----FIVLVGPSGCGKS-------TLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQN   84 (356)
T ss_pred             CCEEEeeeeEEEcCCC----EEEEECCCCCcHH-------HHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence            3579999999999999    8889999999999       9999999999999999999999887654445789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+|+++||+||+.+.....+.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|+||||||+
T Consensus        85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~  164 (356)
T PRK11650         85 YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN  164 (356)
T ss_pred             ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            99999999999999876655444445557789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       165 LD~~~r  170 (356)
T PRK11650        165 LDAKLR  170 (356)
T ss_pred             CCHHHH
Confidence            998754

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-41  Score=283.28  Aligned_cols=155  Identities=16%  Similarity=0.147  Sum_probs=141.0

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      ..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++.+....++++|||||+
T Consensus        18 ~~~~l~~isl~i~~Ge----~~~llGpsGsGKS-------TLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~   86 (351)
T PRK11432         18 SNTVIDNLNLTIKQGT----MVTLLGPSGCGKT-------TVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS   86 (351)
T ss_pred             CeEEEeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence            3568999999999999    8889999999999       9999999999999999999999887654456789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+|+++||.||+.|....++.+..+..+++.++++.+++.++.++++.+|||||||||+|||||+.+|++|+|||||++
T Consensus        87 ~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~  166 (351)
T PRK11432         87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN  166 (351)
T ss_pred             cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence            99999999999999987665555555567899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+..+
T Consensus       167 LD~~~r  172 (351)
T PRK11432        167 LDANLR  172 (351)
T ss_pred             CCHHHH
Confidence            998754

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=3.8e-41  Score=277.59  Aligned_cols=156  Identities=22%  Similarity=0.265  Sum_probs=140.2

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP   89 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~   89 (178)
                      |...+|+||||+|++||    +.+|+|+||+|||       |+++++.|+.+|++|++.++|.++.. ..+.+++|||||
T Consensus        18 ~~~~~l~~vsl~i~~Ge----i~gllGpNGaGKS-------TLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~   86 (306)
T PRK13537         18 GDKLVVDGLSFHVQRGE----CFGLLGPNGAGKT-------TTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP   86 (306)
T ss_pred             CCeEEEecceEEEeCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence            34579999999999999    7779999999999       99999999999999999999998754 345678899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |++.+++.+|++||+.++...++.+..+..+++.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||
T Consensus        87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt  166 (306)
T PRK13537         87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT  166 (306)
T ss_pred             ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            99999999999999998777666554455667889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +||||.++
T Consensus       167 ~gLD~~~~  174 (306)
T PRK13537        167 TGLDPQAR  174 (306)
T ss_pred             cCCCHHHH
Confidence            99999865

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=3e-41  Score=283.47  Aligned_cols=157  Identities=22%  Similarity=0.205  Sum_probs=141.3

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh----cc
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY----LS   83 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~----~~   83 (178)
                      +|...+++||||+|++||    +.+|+|+||||||       ||+++++|+.+|++|+|.++|.++...  .++    ++
T Consensus         3 ~~~~~~l~~vs~~i~~Ge----i~~l~G~sGsGKS-------TLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~   71 (363)
T TIGR01186         3 TGGKKGVNDADLAIAKGE----IFVIMGLSGSGKS-------TTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRK   71 (363)
T ss_pred             cCCceeEEeeEEEEcCCC----EEEEECCCCChHH-------HHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhC
Confidence            455679999999999999    8889999999999       999999999999999999999988652  333    67


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      .++||||++.+++++||+||+.+.....+.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus        72 ~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL  151 (363)
T TIGR01186        72 KIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDIL  151 (363)
T ss_pred             cEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            89999999999999999999998766655554455678899999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||++|||.++
T Consensus       152 LlDEP~saLD~~~r  165 (363)
T TIGR01186       152 LMDEAFSALDPLIR  165 (363)
T ss_pred             EEeCCcccCCHHHH
Confidence            99999999999764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.7e-41  Score=283.20  Aligned_cols=156  Identities=20%  Similarity=0.190  Sum_probs=141.0

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |...+|+||||+++.||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++.+....++.+|||||
T Consensus        15 ~~~~~l~~vs~~i~~Ge----~~~l~GpsGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q   83 (353)
T TIGR03265        15 GAFTALKDISLSVKKGE----FVCLLGPSGCGKT-------TLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ   83 (353)
T ss_pred             CCeEEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence            33568999999999999    8889999999999       999999999999999999999988765445678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+||++||+||+.|....++.++.+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++++|||||+
T Consensus        84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s  163 (353)
T TIGR03265        84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS  163 (353)
T ss_pred             CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            99999999999999987665555445556789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      +||+..+
T Consensus       164 ~LD~~~r  170 (353)
T TIGR03265       164 ALDARVR  170 (353)
T ss_pred             cCCHHHH
Confidence            9998754

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-41  Score=274.46  Aligned_cols=160  Identities=19%  Similarity=0.185  Sum_probs=148.6

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----HHhh
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----LFQY   81 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~~~~   81 (178)
                      .+.+|++..++|+||+|+.||    +..|.|.+|||||       ||+++++++.+|++|+|.++|+++..     +.++
T Consensus        35 ~~~tg~vvGv~~~sl~v~~Ge----IfViMGLSGSGKS-------TLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~  103 (386)
T COG4175          35 LKKTGLVVGVNDASLDVEEGE----IFVIMGLSGSGKS-------TLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL  103 (386)
T ss_pred             HHhhCcEEeeccceeeecCCe----EEEEEecCCCCHH-------HHHHHHhccCCCCCceEEECCcchhcCCHHHHHHH
Confidence            356788889999999999999    5569999999999       99999999999999999999999864     3444


Q ss_pred             c-cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860           82 L-SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        82 ~-~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      | +.+++|||+..++|+.||.||+.|.....++++.+.++++.++++.+||..+.+++|++|||||||||.|||||+.+|
T Consensus       104 Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~  183 (386)
T COG4175         104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDP  183 (386)
T ss_pred             HhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCC
Confidence            4 679999999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~~  177 (178)
                      ++|++|||+|+|||--|
T Consensus       184 ~IlLMDEaFSALDPLIR  200 (386)
T COG4175         184 DILLMDEAFSALDPLIR  200 (386)
T ss_pred             CEEEecCchhhcChHHH
Confidence            99999999999999644

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=8.4e-41  Score=275.01  Aligned_cols=156  Identities=23%  Similarity=0.323  Sum_probs=138.8

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP   89 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~   89 (178)
                      |..++|+||||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|.++.. ..++++.+||+|
T Consensus         4 ~~~~~l~~vs~~i~~Ge----~~~l~G~NGaGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~   72 (302)
T TIGR01188         4 GDFKAVDGVNFKVREGE----VFGFLGPNGAGKT-------TTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVP   72 (302)
T ss_pred             CCeeEEeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEec
Confidence            34579999999999999    7889999999999       99999999999999999999988754 345677899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |++.+++.+|++||+.++....+.+..+..+++.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||
T Consensus        73 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  152 (302)
T TIGR01188        73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT  152 (302)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            99999999999999998766655443444567889999999998899999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +||||.++
T Consensus       153 ~gLD~~~~  160 (302)
T TIGR01188       153 TGLDPRTR  160 (302)
T ss_pred             cCCCHHHH
Confidence            99999764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=6e-41  Score=281.83  Aligned_cols=154  Identities=17%  Similarity=0.199  Sum_probs=139.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc--ccccccccccccHHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA--AQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~--g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|+.||    +.+|+|+||||||       ||++++.|+.+|++  |++.++|+++......++.||||||
T Consensus        18 ~~~l~~vsl~i~~Ge----~~~llGpsGsGKS-------TLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ   86 (362)
T TIGR03258        18 NTVLDDLSLEIEAGE----LLALIGKSGCGKT-------TLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQ   86 (362)
T ss_pred             eEEEeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEEC
Confidence            469999999999999    8889999999999       99999999999999  9999999988654445678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+|+++||+||+.|+....+.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|+|||||+
T Consensus        87 ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s  166 (362)
T TIGR03258        87 NYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLS  166 (362)
T ss_pred             CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence            99999999999999987765555544556788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      +||+..+
T Consensus       167 ~LD~~~r  173 (362)
T TIGR03258       167 ALDANIR  173 (362)
T ss_pred             cCCHHHH
Confidence            9998754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.3e-41  Score=256.61  Aligned_cols=159  Identities=19%  Similarity=0.192  Sum_probs=141.3

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---Hhhcc
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLS   83 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~   83 (178)
                      .+.++-..++++|||+|..||    .++++||||+||+       |.+-.+.|+.+|++|.|.+++.+++.+   .+.|.
T Consensus        11 ~K~y~kr~Vv~~Vsl~v~~GE----iVGLLGPNGAGKT-------T~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl   79 (243)
T COG1137          11 AKSYKKRKVVNDVSLEVNSGE----IVGLLGPNGAGKT-------TTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL   79 (243)
T ss_pred             hHhhCCeeeeeeeeEEEcCCc----EEEEECCCCCCce-------eEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence            344566789999999999999    6669999999999       777889999999999999999999864   45678


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC--ChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGV--KSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +|||+||++.+|-.+||+||+...........+  +.+++++++|+.|++.+.++++..+||||||+|+.|||||+.+|+
T Consensus        80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~  159 (243)
T COG1137          80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK  159 (243)
T ss_pred             CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence            999999999999999999999988777654433  334457899999999999999999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYN  176 (178)
Q Consensus       162 ~lllDEPt~gLD~~~  176 (178)
                      +++||||++|+||.+
T Consensus       160 fiLLDEPFAGVDPia  174 (243)
T COG1137         160 FILLDEPFAGVDPIA  174 (243)
T ss_pred             EEEecCCccCCCchh
Confidence            999999999999975

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=2e-40  Score=260.20  Aligned_cols=154  Identities=16%  Similarity=0.177  Sum_probs=135.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...     ..+++.++|
T Consensus        16 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   84 (216)
T TIGR00960        16 QPALDNLNFHITKGE----MVFLVGHSGAGKS-------TFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGM   84 (216)
T ss_pred             eeEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceE
Confidence            369999999999999    7889999999999       999999999999999999999877532     235678999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus        85 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE  164 (216)
T TIGR00960        85 VFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADE  164 (216)
T ss_pred             EecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99999999999999999876544433323345678899999999988999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       165 Pt~~LD~~~~  174 (216)
T TIGR00960       165 PTGNLDPELS  174 (216)
T ss_pred             CCCcCCHHHH
Confidence            9999999764

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-40  Score=280.00  Aligned_cols=155  Identities=17%  Similarity=0.180  Sum_probs=140.2

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      ..++|++|||+|+.||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++.+....++.+|||||+
T Consensus        31 ~~~~l~~vsl~i~~Ge----~~~llGpsGsGKS-------TLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~   99 (377)
T PRK11607         31 GQHAVDDVSLTIYKGE----IFALLGASGCGKS-------TLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS   99 (377)
T ss_pred             CEEEEeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence            3468999999999999    8889999999999       9999999999999999999999887655556789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+|+++||.||+.+.....+.+..+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|+|||||++
T Consensus       100 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~  179 (377)
T PRK11607        100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA  179 (377)
T ss_pred             CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            99999999999999876555444445567889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+..+
T Consensus       180 LD~~~r  185 (377)
T PRK11607        180 LDKKLR  185 (377)
T ss_pred             CCHHHH
Confidence            998754

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=1.9e-40  Score=259.80  Aligned_cols=154  Identities=20%  Similarity=0.217  Sum_probs=134.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++......++.++|+||++
T Consensus        13 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~   81 (213)
T cd03259          13 VRALDDLSLTVEPGE----FLALLGPSGCGKT-------TLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDY   81 (213)
T ss_pred             eeeecceeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCch
Confidence            469999999999999    7889999999999       99999999999999999999988765434456899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|++||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+||
T Consensus        82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L  161 (213)
T cd03259          82 ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL  161 (213)
T ss_pred             hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            99999999999987544333322233456888999999998889999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       162 D~~~~  166 (213)
T cd03259         162 DAKLR  166 (213)
T ss_pred             CHHHH
Confidence            98764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-40  Score=261.42  Aligned_cols=160  Identities=18%  Similarity=0.147  Sum_probs=138.8

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---Hhh
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQY   81 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~   81 (178)
                      .|..+...-+++++|||+|+.||    ..+|+|++|||||       ||.+.++|+.+|+.|+|.++|.+....   ...
T Consensus        12 ~y~~~~~~~~~l~~VS~~i~~Ge----~lgivGeSGsGKS-------TL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~   80 (252)
T COG1124          12 VYGGGKFAFHALNNVSLEIERGE----TLGIVGESGSGKS-------TLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF   80 (252)
T ss_pred             EecCCcchhhhhcceeEEecCCC----EEEEEcCCCCCHH-------HHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence            35444444479999999999999    6669999999999       999999999999999999999876543   356


Q ss_pred             ccceEEecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           82 LSGIGYCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        82 ~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      ++.|.+|||+|  .+.|..||.+.+.-+....+.+  +..+++.++++.+||. +.++++|.+|||||+|||+|||||+.
T Consensus        81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~--~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~  158 (252)
T COG1124          81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS--KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP  158 (252)
T ss_pred             ccceeEEecCCccccCcchhHHHHHhhhhccCCcc--HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence            67899999997  5899999999998877666554  3345599999999997 78899999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++||||||||+||+..+
T Consensus       159 ~PklLIlDEptSaLD~siQ  177 (252)
T COG1124         159 EPKLLILDEPTSALDVSVQ  177 (252)
T ss_pred             CCCEEEecCchhhhcHHHH
Confidence            9999999999999998653

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.9e-40  Score=279.80  Aligned_cols=154  Identities=16%  Similarity=0.170  Sum_probs=138.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++......++++|||||++
T Consensus        27 ~~~l~~vsl~i~~Ge----~~~LlGpsGsGKS-------TLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~   95 (375)
T PRK09452         27 KEVISNLDLTINNGE----FLTLLGPSGCGKT-------TVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSY   95 (375)
T ss_pred             eEEEeeeEEEEeCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCc
Confidence            468999999999999    8889999999999       99999999999999999999998866544567899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+|+++||.||+.|.....+.+..+..++++++++.++|.+..++++.+|||||||||+|||||+.+|++|+|||||++|
T Consensus        96 ~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~L  175 (375)
T PRK09452         96 ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSAL  175 (375)
T ss_pred             ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcC
Confidence            99999999999998765544444444567899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+..+
T Consensus       176 D~~~r  180 (375)
T PRK09452        176 DYKLR  180 (375)
T ss_pred             CHHHH
Confidence            98754

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=2.1e-40  Score=260.33  Aligned_cols=154  Identities=21%  Similarity=0.220  Sum_probs=134.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH-----h-hccceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF-----Q-YLSGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~-----~-~~~~ig   86 (178)
                      .++|+++||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|.++....     . .++.++
T Consensus        17 ~~il~~~s~~i~~G~----~~~l~G~nGsGKS-------TLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   85 (218)
T cd03255          17 VQALKGVSLSIEKGE----FVAIVGPSGSGKS-------TLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIG   85 (218)
T ss_pred             eeEEeeeEEEEcCCC----EEEEEcCCCCCHH-------HHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEE
Confidence            469999999999999    7889999999999       9999999999999999999998875421     2 346799


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      |+||++.+++.+|++||+.+.....+....+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|++||||
T Consensus        86 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD  165 (218)
T cd03255          86 FVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD  165 (218)
T ss_pred             EEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence            99999999999999999988654443322233457888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       166 EP~~~LD~~~~  176 (218)
T cd03255         166 EPTGNLDSETG  176 (218)
T ss_pred             CCcccCCHHHH
Confidence            99999999764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=2.8e-40  Score=277.05  Aligned_cols=156  Identities=17%  Similarity=0.195  Sum_probs=137.9

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |..++|++|||+|+.||    +.+|+|+||||||       ||++++.|+.+|++|+|+++|+++......++.++||||
T Consensus        13 ~~~~~l~~isl~i~~Ge----~~~llGpsGsGKS-------TLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q   81 (353)
T PRK10851         13 GRTQVLNDISLDIPSGQ----MVALLGPSGSGKT-------TLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ   81 (353)
T ss_pred             CCeEEEEEeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence            33579999999999999    8889999999999       999999999999999999999988654444568999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhc----CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           91 FNGINEHLTAQEMLECFSALR----GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      ++.+++++||.||+.+.....    ..+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|+||
T Consensus        82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD  161 (353)
T PRK10851         82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD  161 (353)
T ss_pred             CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999999999999999865432    2223344568899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       162 EP~s~LD~~~r  172 (353)
T PRK10851        162 EPFGALDAQVR  172 (353)
T ss_pred             CCCccCCHHHH
Confidence            99999998764

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-40  Score=278.26  Aligned_cols=154  Identities=16%  Similarity=0.175  Sum_probs=137.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|+.||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++......++.++|+||++
T Consensus        16 ~~vl~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~   84 (369)
T PRK11000         16 VVISKDINLDIHEGE----FVVFVGPSGCGKS-------TLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSY   84 (369)
T ss_pred             eEEEeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCc
Confidence            469999999999999    8889999999999       99999999999999999999998865444456799999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++++||+||+.+.....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus        85 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~L  164 (369)
T PRK11000         85 ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL  164 (369)
T ss_pred             ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            99999999999998765544443344567899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       165 D~~~~  169 (369)
T PRK11000        165 DAALR  169 (369)
T ss_pred             CHHHH
Confidence            98764

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=6.3e-40  Score=273.72  Aligned_cols=156  Identities=21%  Similarity=0.240  Sum_probs=138.9

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP   89 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~   89 (178)
                      |...+|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.. ..+.++.+||+|
T Consensus        52 ~~~~~l~~is~~i~~Ge----i~gLlGpNGaGKS-------TLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~  120 (340)
T PRK13536         52 GDKAVVNGLSFTVASGE----CFGLLGPNGAGKS-------TIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP  120 (340)
T ss_pred             CCEEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEe
Confidence            44569999999999999    7889999999999       99999999999999999999998754 345677899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |++.+++.+|+.||+.++...++....+..+++.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||
T Consensus       121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt  200 (340)
T PRK13536        121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT  200 (340)
T ss_pred             CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            99999999999999998766555443344567788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +||||.++
T Consensus       201 ~gLD~~~r  208 (340)
T PRK13536        201 TGLDPHAR  208 (340)
T ss_pred             CCCCHHHH
Confidence            99999765

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=6.6e-40  Score=260.41  Aligned_cols=154  Identities=17%  Similarity=0.150  Sum_probs=134.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++...     ..+++.++|
T Consensus        13 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   81 (235)
T cd03261          13 RTVLKGVDLDVRRGE----ILAIIGPSGSGKS-------TLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGM   81 (235)
T ss_pred             EEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEE
Confidence            469999999999999    8889999999999       999999999999999999999876542     346778999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           88 CPQFNGINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      +||++.+++.+|+.||+.+..... .....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||
T Consensus        82 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD  161 (235)
T cd03261          82 LFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD  161 (235)
T ss_pred             EccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            999999999999999998764332 2222333456888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       162 EPt~~LD~~~~  172 (235)
T cd03261         162 EPTAGLDPIAS  172 (235)
T ss_pred             CCcccCCHHHH
Confidence            99999999764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=6.5e-40  Score=258.10  Aligned_cols=151  Identities=21%  Similarity=0.251  Sum_probs=133.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..   .++.++|+||++
T Consensus        17 ~~il~~vs~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~---~~~~i~~v~q~~   82 (220)
T cd03293          17 VTALEDISLSVEEGE----FVALVGPSGCGKS-------TLLRIIAGLERPTSGEVLVDGEPVTG---PGPDRGYVFQQD   82 (220)
T ss_pred             eEEEeceeEEEeCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECcc---ccCcEEEEeccc
Confidence            579999999999999    7889999999999       99999999999999999999987653   356799999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|++||+.+.....+....+..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+||
T Consensus        83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~L  162 (220)
T cd03293          83 ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL  162 (220)
T ss_pred             ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence            98888999999987654443332333567889999999998889999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       163 D~~~~  167 (220)
T cd03293         163 DALTR  167 (220)
T ss_pred             CHHHH
Confidence            99764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.6e-40  Score=274.04  Aligned_cols=154  Identities=18%  Similarity=0.185  Sum_probs=137.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|.++...     ..++++|+|
T Consensus        18 ~~il~~vsl~i~~Ge----i~~iiG~nGsGKS-------TLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~   86 (343)
T PRK11153         18 IHALNNVSLHIPAGE----IFGVIGASGAGKS-------TLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGM   86 (343)
T ss_pred             eEEEEeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEE
Confidence            479999999999999    7889999999999       999999999999999999999987542     234678999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +||++.+++.+|+.||+.+.....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus        87 v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDE  166 (343)
T PRK11153         87 IFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDE  166 (343)
T ss_pred             EeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            99999999999999999987655544433445678899999999998999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       167 Pts~LD~~~~  176 (343)
T PRK11153        167 ATSALDPATT  176 (343)
T ss_pred             CcccCCHHHH
Confidence            9999999764

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=8.1e-40  Score=256.96  Aligned_cols=153  Identities=22%  Similarity=0.295  Sum_probs=135.9

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQFN   92 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~~   92 (178)
                      ++++++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.. ...+++.++|+||++
T Consensus        19 ~il~~~sl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~   87 (218)
T cd03266          19 QAVDGVSFTVKPGE----VTGLLGPNGAGKT-------TTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDST   87 (218)
T ss_pred             eeecceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCc
Confidence            69999999999999    8889999999999       99999999999999999999988754 345567899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|+|||||+||
T Consensus        88 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L  167 (218)
T cd03266          88 GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL  167 (218)
T ss_pred             ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCC
Confidence            99999999999987655444333344567889999999998899999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       168 D~~~~  172 (218)
T cd03266         168 DVMAT  172 (218)
T ss_pred             CHHHH
Confidence            98764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.2e-40  Score=259.39  Aligned_cols=154  Identities=15%  Similarity=0.147  Sum_probs=134.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hhhc-cceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYL-SGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~-~~ig   86 (178)
                      .++|+++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+++++|+++...     .+.+ +.++
T Consensus        22 ~~il~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~   90 (233)
T PRK11629         22 TDVLHNVSFSIGEGE----MMAIVGSSGSGKS-------TLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLG   90 (233)
T ss_pred             eeeEEeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEE
Confidence            469999999999999    7889999999999       999999999999999999999887542     1232 5799


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      |+||++.+++.+|++||+.+.....+....+.++++.++++.+++.+..++.+.+|||||||||+|||||+.+|+++|||
T Consensus        91 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD  170 (233)
T PRK11629         91 FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD  170 (233)
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999999987544333333334567889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       171 EPt~~LD~~~~  181 (233)
T PRK11629        171 EPTGNLDARNA  181 (233)
T ss_pred             CCCCCCCHHHH
Confidence            99999999764

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.9e-40  Score=248.78  Aligned_cols=160  Identities=16%  Similarity=0.156  Sum_probs=145.4

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-------
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-------   77 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-------   77 (178)
                      ...+.+|...+|++||+.-.+|+    ..+|+|-+|+|||       |+++|++-+..|++|.|.++|+++.-       
T Consensus        11 dlHK~~G~~eVLKGvSL~A~~Gd----VisIIGsSGSGKS-------TfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~   79 (256)
T COG4598          11 DLHKRYGEHEVLKGVSLQANAGD----VISIIGSSGSGKS-------TFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ   79 (256)
T ss_pred             HHHhhcccchhhcceeeecCCCC----EEEEecCCCCchh-------HHHHHHHhhcCCCCceEEECCeEEEeeeCCCCC
Confidence            34678888999999999999999    7779999999999       99999999999999999999998641       


Q ss_pred             --------HHhhccceEEecCCCCCCCCCCHHHHHHHHH-HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHH
Q psy860           78 --------LFQYLSGIGYCPQFNGINEHLTAQEMLECFS-ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR  148 (178)
Q Consensus        78 --------~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQ  148 (178)
                              +..+|.+.|+|||+.+++.++||.||+.-.+ ..-+.++.+..++++.+|.++|+.+..+.+|..|||||||
T Consensus        80 l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQ  159 (256)
T COG4598          80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQ  159 (256)
T ss_pred             eeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHH
Confidence                    2356788999999999999999999997643 4457777888899999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860          149 KLSTAMALIGDRDDGFQKLPFSSQNLY  175 (178)
Q Consensus       149 Rv~IAraL~~~P~~lllDEPt~gLD~~  175 (178)
                      |++|||||+.+|+++++|||||+|||.
T Consensus       160 R~aIARaLameP~vmLFDEPTSALDPE  186 (256)
T COG4598         160 RVAIARALAMEPEVMLFDEPTSALDPE  186 (256)
T ss_pred             HHHHHHHHhcCCceEeecCCcccCCHH
Confidence            999999999999999999999999995

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=8.2e-40  Score=256.11  Aligned_cols=154  Identities=16%  Similarity=0.166  Sum_probs=135.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++++||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++......+++++|+||++
T Consensus        13 ~~~l~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~   81 (213)
T cd03301          13 VTALDDLNLDIADGE----FVVLLGPSGCGKT-------TTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNY   81 (213)
T ss_pred             eeeeeceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecCh
Confidence            479999999999999    7889999999999       99999999999999999999988754433346799999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++..|++||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++++|||||+||
T Consensus        82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~L  161 (213)
T cd03301          82 ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL  161 (213)
T ss_pred             hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            98889999999987654443333334557888999999998899999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       162 D~~~~  166 (213)
T cd03301         162 DAKLR  166 (213)
T ss_pred             CHHHH
Confidence            99764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=1.3e-39  Score=267.80  Aligned_cols=155  Identities=17%  Similarity=0.250  Sum_probs=139.2

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQ   90 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q   90 (178)
                      ...+|+||||+|++||    +.+|+|+||+|||       |+++++.|+.+|++|+|.++|.++.. ..++++++||+||
T Consensus        14 ~~~~l~~is~~i~~Ge----i~~l~G~NGaGKT-------TLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q   82 (301)
T TIGR03522        14 TQNALDEVSFEAQKGR----IVGFLGPNGAGKS-------TTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE   82 (301)
T ss_pred             CEEEEEEeEEEEeCCe----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence            3569999999999999    7779999999999       99999999999999999999988754 3456778999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++.+|+.||+.++...++.+..+..++++++++.+++.+..++++.+|||||||||+||+||+++|++|||||||+
T Consensus        83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~  162 (301)
T TIGR03522        83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT  162 (301)
T ss_pred             CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            99999999999999987766655444445678899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      ||||.++
T Consensus       163 gLD~~~~  169 (301)
T TIGR03522       163 GLDPNQL  169 (301)
T ss_pred             cCCHHHH
Confidence            9999764

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1.7e-39  Score=255.77  Aligned_cols=154  Identities=21%  Similarity=0.266  Sum_probs=135.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~   91 (178)
                      .++|+||||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.. ..+.++.++|+||+
T Consensus        13 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~   81 (220)
T cd03265          13 FEAVRGVSFRVRRGE----IFGLLGPNGAGKT-------TTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQD   81 (220)
T ss_pred             EEeeeceeEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCC
Confidence            479999999999999    8889999999999       99999999999999999999987643 23456789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++.+|+++++.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+|
T Consensus        82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~  161 (220)
T cd03265          82 LSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG  161 (220)
T ss_pred             ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence            99999999999998865554443333456788999999999888999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       162 LD~~~~  167 (220)
T cd03265         162 LDPQTR  167 (220)
T ss_pred             CCHHHH
Confidence            999764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.6e-39  Score=254.67  Aligned_cols=154  Identities=16%  Similarity=0.115  Sum_probs=134.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|+|+||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...     ..+++.++|
T Consensus        15 ~~il~~is~~i~~G~----~~~l~G~nGsGKS-------TLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   83 (214)
T TIGR02673        15 VAALHDVSLHIRKGE----FLFLTGPSGAGKT-------TLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGV   83 (214)
T ss_pred             ceeecceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEE
Confidence            469999999999999    7789999999999       999999999999999999999887542     235678999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|+++||||
T Consensus        84 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDE  163 (214)
T TIGR02673        84 VFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADE  163 (214)
T ss_pred             EecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            99999999999999999886544333323345678899999999988899999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       164 Pt~~LD~~~~  173 (214)
T TIGR02673       164 PTGNLDPDLS  173 (214)
T ss_pred             CcccCCHHHH
Confidence            9999999764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=1.4e-39  Score=256.03  Aligned_cols=154  Identities=16%  Similarity=0.157  Sum_probs=133.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hhhc-cceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYL-SGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~-~~ig   86 (178)
                      .++|+++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...     ..++ +.++
T Consensus        18 ~~~l~~isl~i~~G~----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   86 (221)
T TIGR02211        18 TRVLKGVSLSIGKGE----IVAIVGSSGSGKS-------TLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLG   86 (221)
T ss_pred             eEeEeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEE
Confidence            469999999999999    7889999999999       999999999999999999999877542     1233 5799


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      |+||++.+++.+|++||+.+..........+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|++||||
T Consensus        87 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD  166 (221)
T TIGR02211        87 FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLAD  166 (221)
T ss_pred             EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence            99999999989999999987543333222233456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       167 EPt~~LD~~~~  177 (221)
T TIGR02211       167 EPTGNLDNNNA  177 (221)
T ss_pred             CCCCcCCHHHH
Confidence            99999999764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=1.9e-39  Score=267.06  Aligned_cols=155  Identities=19%  Similarity=0.191  Sum_probs=135.8

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQ   90 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q   90 (178)
                      ..++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.. ....++.+||+||
T Consensus        16 ~~~~l~~vsl~i~~Ge----~~~l~G~NGaGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q   84 (303)
T TIGR01288        16 DKVVVNDLSFTIARGE----CFGLLGPNGAGKS-------TIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQ   84 (303)
T ss_pred             CeEEEcceeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEec
Confidence            3569999999999999    7889999999999       99999999999999999999987643 2345678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++.+|+.||+.++....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus        85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~  164 (303)
T TIGR01288        85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT  164 (303)
T ss_pred             cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            99999999999999876554443333334567889999999988999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       165 gLD~~~~  171 (303)
T TIGR01288       165 GLDPHAR  171 (303)
T ss_pred             CCCHHHH
Confidence            9999764

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3e-39  Score=242.02  Aligned_cols=159  Identities=21%  Similarity=0.208  Sum_probs=144.9

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH-----hh
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF-----QY   81 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~-----~~   81 (178)
                      .++.+-.++|++|++.|.+||    -.+|+|++|+|||       ||+..+.|+..|++|+|.+.|+...++.     .+
T Consensus        17 g~~~~~l~IL~~V~L~v~~Ge----~vaiVG~SGSGKS-------TLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181          17 GQGEGELSILKGVELVVKRGE----TVAIVGPSGSGKS-------TLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             cCCCcceeEeecceEEecCCc----eEEEEcCCCCcHH-------hHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            345566899999999999999    7889999999999       9999999999999999999999887642     34


Q ss_pred             c-cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860           82 L-SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        82 ~-~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      | +++|+|||...+.|++|..||+..+..+.+....+.++.+.++|+.+||.+..+.+|.+||||+||||+||||++..|
T Consensus        86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P  165 (228)
T COG4181          86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP  165 (228)
T ss_pred             hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence            3 679999999999999999999999998888666677778999999999999999999999999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~  176 (178)
                      ++||.||||..||-.+
T Consensus       166 ~vLfADEPTGNLD~~T  181 (228)
T COG4181         166 DVLFADEPTGNLDRAT  181 (228)
T ss_pred             CEEeccCCCCCcchhH
Confidence            9999999999999653

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=1.8e-39  Score=254.17  Aligned_cols=154  Identities=18%  Similarity=0.188  Sum_probs=134.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|+++||++++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...     ..+++.++|
T Consensus        14 ~~~l~~~sl~i~~G~----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~   82 (214)
T cd03292          14 TAALDGINISISAGE----FVFLVGPSGAGKS-------TLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGV   82 (214)
T ss_pred             ceeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEE
Confidence            369999999999999    7889999999999       999999999999999999999877532     245678999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +||++.+++.+|+.||+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++++|||
T Consensus        83 v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  162 (214)
T cd03292          83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE  162 (214)
T ss_pred             EecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            99999999999999999886544433333344578889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       163 Pt~~LD~~~~  172 (214)
T cd03292         163 PTGNLDPDTT  172 (214)
T ss_pred             CCCcCCHHHH
Confidence            9999999764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-39  Score=275.05  Aligned_cols=159  Identities=17%  Similarity=0.135  Sum_probs=139.4

Q ss_pred             hccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--H---h-h
Q psy860            8 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--F---Q-Y   81 (178)
Q Consensus         8 ~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~---~-~   81 (178)
                      +..|.+.+|++|||+|++||    +.+|+|+||+|||       ||+++++|+.+|++|+|+++|.++...  .   + .
T Consensus        36 ~~~~~~~~L~~isl~i~~Ge----i~~LvG~NGsGKS-------TLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~  104 (400)
T PRK10070         36 EKTGLSLGVKDASLAIEEGE----IFVIMGLSGSGKS-------TMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR  104 (400)
T ss_pred             hhcCCeEEEEeEEEEEcCCC----EEEEECCCCchHH-------HHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHH
Confidence            34466679999999999999    8889999999999       999999999999999999999987542  1   2 2


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +++++|+||++.+++++|+.||+.+.....+.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus       105 ~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~  184 (400)
T PRK10070        105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPD  184 (400)
T ss_pred             hCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence            35799999999999999999999987655554444445678899999999999999999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|||||||+|||+.++
T Consensus       185 iLLLDEPts~LD~~~r  200 (400)
T PRK10070        185 ILLMDEAFSALDPLIR  200 (400)
T ss_pred             EEEEECCCccCCHHHH
Confidence            9999999999999764

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-39  Score=252.42  Aligned_cols=155  Identities=23%  Similarity=0.210  Sum_probs=134.8

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---Hhhccce
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGI   85 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~i   85 (178)
                      +.|-.+||++|||+++.||    +++++|+||+|||       |+++++.|+.++.+|+|.++|++++..   ...|.+|
T Consensus        12 ~YG~~~~L~gvsl~v~~Ge----iv~llG~NGaGKT-------TlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi   80 (237)
T COG0410          12 GYGKIQALRGVSLEVERGE----IVALLGRNGAGKT-------TLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI   80 (237)
T ss_pred             cccceeEEeeeeeEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence            4566799999999999999    7779999999999       999999999999999999999999764   3467899


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-CCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           86 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-LTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      +||||...+|+.+||+||+.+....... +.......+++.+.|- |.+..+++.++|||||||.++|||||+.+|++|+
T Consensus        81 ~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL  159 (237)
T COG0410          81 AYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL  159 (237)
T ss_pred             EeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999999999986544321 1122223777888874 6788999999999999999999999999999999


Q ss_pred             eeCCCCCCCCC
Q psy860          165 QKLPFSSQNLY  175 (178)
Q Consensus       165 lDEPt~gLD~~  175 (178)
                      |||||.||-|.
T Consensus       160 LDEPs~GLaP~  170 (237)
T COG0410         160 LDEPSEGLAPK  170 (237)
T ss_pred             ecCCccCcCHH
Confidence            99999999875

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-39  Score=264.13  Aligned_cols=154  Identities=15%  Similarity=0.148  Sum_probs=134.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v   88 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|.++..    ..+.++.+|||
T Consensus        20 ~~~l~~vs~~i~~Ge----~~~i~G~nGaGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v   88 (287)
T PRK13637         20 KKALDNVNIEIEDGE----FVGLIGHTGSGKS-------TLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLV   88 (287)
T ss_pred             cceeeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEE
Confidence            469999999999999    8889999999999       99999999999999999999998754    23567789999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC--ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT--EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      ||++. .++..||+||+.+.....+....+..+++.++++.++|.  +..++++.+|||||||||+|||||+.+|++|||
T Consensus        89 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llll  168 (287)
T PRK13637         89 FQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILIL  168 (287)
T ss_pred             ecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99974 334679999998765544554445566789999999997  678999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCC
Q psy860          166 KLPFSSQNLYNT  177 (178)
Q Consensus       166 DEPt~gLD~~~~  177 (178)
                      ||||+|||+.++
T Consensus       169 DEPt~gLD~~~~  180 (287)
T PRK13637        169 DEPTAGLDPKGR  180 (287)
T ss_pred             ECCccCCCHHHH
Confidence            999999999764

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.8e-39  Score=254.72  Aligned_cols=158  Identities=18%  Similarity=0.283  Sum_probs=147.4

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG   86 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig   86 (178)
                      .+.+|...|++||||++++|++++    ++|+||+||+       |.++.++++++|++|.|.++|.++..  ..+.+||
T Consensus         9 tK~Fg~k~av~~isf~v~~G~i~G----llG~NGAGKT-------TtfRmILglle~~~G~I~~~g~~~~~--~~~~rIG   75 (300)
T COG4152           9 TKSFGDKKAVDNISFEVPPGEIFG----LLGPNGAGKT-------TTFRMILGLLEPTEGEITWNGGPLSQ--EIKNRIG   75 (300)
T ss_pred             hhccCceeeecceeeeecCCeEEE----eecCCCCCcc-------chHHHHhccCCccCceEEEcCcchhh--hhhhhcc
Confidence            467788899999999999999655    9999999999       88899999999999999999987653  2345799


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      |+|++.++|+.+||.|.+.|++.+++++..+.+..+..||+++++..+..+++.+||.|||||+.+..|++++|+++|||
T Consensus        76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD  155 (300)
T COG4152          76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD  155 (300)
T ss_pred             cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      ||+|||||.+.
T Consensus       156 EPFSGLDPVN~  166 (300)
T COG4152         156 EPFSGLDPVNV  166 (300)
T ss_pred             CCccCCChhhH
Confidence            99999999875

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=4e-39  Score=251.84  Aligned_cols=152  Identities=20%  Similarity=0.276  Sum_probs=134.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .+++++|||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ..++.++|+||++
T Consensus        13 ~~~l~~v~~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~i~~~~q~~   79 (210)
T cd03269          13 VTALDDISFSVEKGE----IFGLLGPNGAGKT-------TTIRMILGIILPDSGEVLFDGKPLDI--AARNRIGYLPEER   79 (210)
T ss_pred             EEEEeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCCchhH--HHHccEEEeccCC
Confidence            469999999999999    7889999999999       99999999999999999999987653  4466899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|+.||+.+.....+....+..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+||
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L  159 (210)
T cd03269          80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL  159 (210)
T ss_pred             cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence            99999999999987655444433344567889999999998889999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       160 D~~~~  164 (210)
T cd03269         160 DPVNV  164 (210)
T ss_pred             CHHHH
Confidence            98764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=3.6e-39  Score=254.17  Aligned_cols=154  Identities=17%  Similarity=0.140  Sum_probs=134.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|++|||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++...     ..+++.++|
T Consensus        15 ~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~   83 (222)
T PRK10908         15 RQALQGVTFHMRPGE----MAFLTGHSGAGKS-------TLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGM   83 (222)
T ss_pred             CeEEeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEE
Confidence            469999999999999    7889999999999       999999999999999999999877542     235678999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|++|+|||
T Consensus        84 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (222)
T PRK10908         84 IFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE  163 (222)
T ss_pred             EecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            99999988999999999876544433333334567889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       164 Pt~~LD~~~~  173 (222)
T PRK10908        164 PTGNLDDALS  173 (222)
T ss_pred             CCCcCCHHHH
Confidence            9999999754

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=4.9e-39  Score=247.92  Aligned_cols=154  Identities=16%  Similarity=0.069  Sum_probs=130.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v   88 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|.+.++|.++..    ...+++.++|+
T Consensus         5 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~   73 (190)
T TIGR01166         5 PEVLKGLNFAAERGE----VLALLGANGAGKS-------TLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLV   73 (190)
T ss_pred             cceecceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEE
Confidence            479999999999999    7889999999999       99999999999999999999987641    23456789999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      ||++. .++..|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||
T Consensus        74 ~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  153 (190)
T TIGR01166        74 FQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE  153 (190)
T ss_pred             ecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            99973 33457999999875443333223334568889999999988999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       154 Pt~~LD~~~~  163 (190)
T TIGR01166       154 PTAGLDPAGR  163 (190)
T ss_pred             CcccCCHHHH
Confidence            9999998754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=5.4e-39  Score=252.61  Aligned_cols=154  Identities=25%  Similarity=0.339  Sum_probs=135.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~   91 (178)
                      .++|+||||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.. ..++++.++|+||+
T Consensus        15 ~~il~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~   83 (220)
T cd03263          15 KPAVDDLSLNVYKGE----IFGLLGHNGAGKT-------TTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQF   83 (220)
T ss_pred             ceeecceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCc
Confidence            479999999999999    8889999999999       99999999999999999999988754 23456789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++.+|+.+|+.+.....+.+..+..+++.++++.+++.+..++++.+||+||||||+|||||+.+|+++||||||+|
T Consensus        84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~  163 (220)
T cd03263          84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG  163 (220)
T ss_pred             CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence            99998999999998866554433333456788999999999888999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       164 LD~~~~  169 (220)
T cd03263         164 LDPASR  169 (220)
T ss_pred             CCHHHH
Confidence            999754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=3.1e-39  Score=257.26  Aligned_cols=154  Identities=15%  Similarity=0.158  Sum_probs=133.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++......+++++|+||++
T Consensus        15 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~   83 (239)
T cd03296          15 FVALDDVSLDIPSGE----LVALLGPSGSGKT-------TLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHY   83 (239)
T ss_pred             EEeeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCC
Confidence            469999999999999    7889999999999       99999999999999999999987754333356799999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCC----CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           93 GINEHLTAQEMLECFSALRGI----PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      .+++.+|+.||+.+.......    ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++||||
T Consensus        84 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  163 (239)
T cd03296          84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP  163 (239)
T ss_pred             cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            999899999999875433221    1112345678899999999888999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       164 ~~~LD~~~~  172 (239)
T cd03296         164 FGALDAKVR  172 (239)
T ss_pred             cccCCHHHH
Confidence            999999764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=5.9e-39  Score=250.93  Aligned_cols=154  Identities=19%  Similarity=0.151  Sum_probs=132.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ...+++.++|+||
T Consensus        14 ~~il~~vs~~i~~G~----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   82 (211)
T cd03225          14 RPALDDISLTIKKGE----FVLIVGPNGSGKS-------TLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ   82 (211)
T ss_pred             eeeecceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEec
Confidence            469999999999999    7789999999999       99999999999999999999987753  3445678999999


Q ss_pred             CCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           91 FNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        91 ~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      ++. .++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||
T Consensus        83 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  162 (211)
T cd03225          83 NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT  162 (211)
T ss_pred             ChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            975 3667899999987544333222233456888999999998889999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       163 ~~LD~~~~  170 (211)
T cd03225         163 AGLDPAGR  170 (211)
T ss_pred             ccCCHHHH
Confidence            99999764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=7.9e-39  Score=249.84  Aligned_cols=150  Identities=21%  Similarity=0.238  Sum_probs=134.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+++||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++....+.++.++|+||++
T Consensus        13 ~~~l~~~~~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~   81 (208)
T cd03268          13 KRVLDDISLHVKKGE----IYGFLGPNGAGKT-------TTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAP   81 (208)
T ss_pred             eEeEeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCC
Confidence            479999999999999    8889999999999       99999999999999999999988755445567899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|+.||+.++......    ..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+||
T Consensus        82 ~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L  157 (208)
T cd03268          82 GFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL  157 (208)
T ss_pred             ccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence            999999999999886543322    2456888999999998889999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       158 D~~~~  162 (208)
T cd03268         158 DPDGI  162 (208)
T ss_pred             CHHHH
Confidence            99764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=6e-39  Score=250.13  Aligned_cols=149  Identities=21%  Similarity=0.101  Sum_probs=129.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.. ...+++++|+||++
T Consensus        13 ~~~l~~v~~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~i~~~~q~~   80 (205)
T cd03226          13 TEILDDLSLDLYAGE----IIALTGKNGAGKT-------TLAKILAGLIKESSGSILLNGKPIKA-KERRKSIGYVMQDV   80 (205)
T ss_pred             CceeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEEhhh-HHhhcceEEEecCh
Confidence            479999999999999    7889999999999       99999999999999999999987754 34566899999997


Q ss_pred             C-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           93 G-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        93 ~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      . .++..|+.||+.++.....    ...+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+|
T Consensus        81 ~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  156 (205)
T cd03226          81 DYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG  156 (205)
T ss_pred             hhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence            4 3446799999987543221    2235788999999999889999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       157 LD~~~~  162 (205)
T cd03226         157 LDYKNM  162 (205)
T ss_pred             CCHHHH
Confidence            999764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.5e-39  Score=270.28  Aligned_cols=160  Identities=19%  Similarity=0.269  Sum_probs=140.0

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccc----cccc-----
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMT----NIMH-----   77 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~----~~~~-----   77 (178)
                      .+.+|.+.+++||||+|++||    +.+|+|+||+|||       ||+++++|+.+|++|+|.++|+    ++..     
T Consensus        31 ~~~~g~~~~l~~vsf~i~~Ge----i~~I~G~nGsGKS-------TLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~   99 (382)
T TIGR03415        31 LDETGLVVGVANASLDIEEGE----ICVLMGLSGSGKS-------SLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAAT   99 (382)
T ss_pred             HHhhCCEEEEEeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCcEEEECCEecccccccCCHHH
Confidence            355677889999999999999    7889999999999       9999999999999999999996    3322     


Q ss_pred             HHhhc-cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH
Q psy860           78 LFQYL-SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL  156 (178)
Q Consensus        78 ~~~~~-~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL  156 (178)
                      ..+.| ++++|+||++.+++++|+.||+.+.....+.+..+.++++.++++.++|.+..++++.+|||||||||+|||||
T Consensus       100 l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARAL  179 (382)
T TIGR03415       100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF  179 (382)
T ss_pred             HHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence            22333 57999999999999999999999876555554445556789999999999999999999999999999999999


Q ss_pred             hCCCCeEEeeCCCCCCCCCCC
Q psy860          157 IGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       157 ~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +.+|++|||||||+||||.++
T Consensus       180 a~~P~ILLlDEPts~LD~~~r  200 (382)
T TIGR03415       180 AMDADILLMDEPFSALDPLIR  200 (382)
T ss_pred             hcCCCEEEEECCCccCCHHHH
Confidence            999999999999999999764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=8.3e-39  Score=253.68  Aligned_cols=153  Identities=16%  Similarity=0.144  Sum_probs=134.2

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEEe
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGYC   88 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~v   88 (178)
                      ++|+++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...     .+.++.++|+
T Consensus        19 ~il~~~s~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~   87 (233)
T cd03258          19 TALKDVSLSVPKGE----IFGIIGRSGAGKS-------TLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMI   87 (233)
T ss_pred             eeeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEE
Confidence            79999999999999    7889999999999       999999999999999999999887532     2346789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      ||++.+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||||
T Consensus        88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP  167 (233)
T cd03258          88 FQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEA  167 (233)
T ss_pred             ccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            99999999999999998765443332223345688899999999888999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       168 ~~~LD~~~~  176 (233)
T cd03258         168 TSALDPETT  176 (233)
T ss_pred             CCcCCHHHH
Confidence            999999764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=8.6e-39  Score=249.01  Aligned_cols=154  Identities=18%  Similarity=0.120  Sum_probs=134.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------HhhccceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQYLSGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~~~~ig   86 (178)
                      .++|++|||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...      ...+++++
T Consensus        11 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608        11 KIILDDLNLTIEKGK----MYAIIGESGSGKS-------TLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             EEEEeceEEEEeCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence            469999999999999    7779999999999       999999999999999999999985421      23467899


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      |++|++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++|||
T Consensus        80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD  159 (206)
T TIGR03608        80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD  159 (206)
T ss_pred             EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            99999999999999999988544433333334567889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       160 EPt~~LD~~~~  170 (206)
T TIGR03608       160 EPTGSLDPKNR  170 (206)
T ss_pred             CCcCCCCHHHH
Confidence            99999998764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=1.1e-38  Score=258.53  Aligned_cols=157  Identities=19%  Similarity=0.202  Sum_probs=135.3

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--H---hh-cc
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--F---QY-LS   83 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~---~~-~~   83 (178)
                      +|..++|+||||+|+.||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|.++...  .   +. ++
T Consensus        34 ~~~~~il~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~  102 (269)
T cd03294          34 TGQTVGVNDVSLDVREGE----IFVIMGLSGSGKS-------TLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK  102 (269)
T ss_pred             cCCceEeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence            345678999999999999    8889999999999       999999999999999999999877542  1   12 35


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      +++|+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus       103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~il  182 (269)
T cd03294         103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL  182 (269)
T ss_pred             cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            79999999999999999999987654433332333456888999999998899999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       183 lLDEPt~~LD~~~~  196 (269)
T cd03294         183 LMDEAFSALDPLIR  196 (269)
T ss_pred             EEcCCCccCCHHHH
Confidence            99999999999764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.3e-38  Score=252.34  Aligned_cols=154  Identities=21%  Similarity=0.263  Sum_probs=133.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~   89 (178)
                      .++|++|||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...  .. .++.++|+|
T Consensus        13 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   81 (232)
T cd03218          13 RKVVNGVSLSVKQGE----IVGLLGPNGAGKT-------TTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLP   81 (232)
T ss_pred             EEeeccceeEecCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEec
Confidence            469999999999999    7889999999999       999999999999999999999876542  22 345799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |++.+++.+|++||+.++....+....+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|++|+|||||
T Consensus        82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  161 (232)
T cd03218          82 QEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF  161 (232)
T ss_pred             CCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence            99999999999999987644333322233456788999999998889999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       162 ~~LD~~~~  169 (232)
T cd03218         162 AGVDPIAV  169 (232)
T ss_pred             ccCCHHHH
Confidence            99999764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.2e-39  Score=250.75  Aligned_cols=160  Identities=20%  Similarity=0.149  Sum_probs=141.2

Q ss_pred             hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH---hhc
Q psy860            6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF---QYL   82 (178)
Q Consensus         6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~---~~~   82 (178)
                      ..+.+|...|++||||+|++||    +.+|+||||+|||       |++.++.|+.+|++|+|.++|+++....   -.+
T Consensus        10 l~k~FGGl~Al~~Vsl~v~~Ge----i~~LIGPNGAGKT-------TlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar   78 (250)
T COG0411          10 LSKRFGGLTAVNDVSLEVRPGE----IVGLIGPNGAGKT-------TLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR   78 (250)
T ss_pred             ceeecCCEEEEeceeEEEcCCe----EEEEECCCCCCce-------eeeeeecccccCCCceEEECCcccCCCCHHHHHh
Confidence            3577899999999999999999    7889999999999       9999999999999999999999997642   346


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhc-------CC-----CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHH
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALR-------GI-----PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-------~~-----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv  150 (178)
                      .+|+..||...+|+++||.||+......+       +.     ...+..+++.++|+.+||.+.+++++++||+|||+|+
T Consensus        79 ~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L  158 (250)
T COG0411          79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL  158 (250)
T ss_pred             ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence            78999999999999999999998753311       11     1234556788999999999999999999999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      .|||||+++|++|+||||++||.|..
T Consensus       159 EIArALa~~P~lLLLDEPaAGln~~e  184 (250)
T COG0411         159 EIARALATQPKLLLLDEPAAGLNPEE  184 (250)
T ss_pred             HHHHHHhcCCCEEEecCccCCCCHHH
Confidence            99999999999999999999999864

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=2.2e-38  Score=252.08  Aligned_cols=154  Identities=19%  Similarity=0.133  Sum_probs=132.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----HHhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----LFQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~~~~~~~ig~   87 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..     ....++.++|
T Consensus        14 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   82 (241)
T cd03256          14 KKALKDVSLSINPGE----FVALIGPSGAGKS-------TLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGM   82 (241)
T ss_pred             cEEEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEE
Confidence            469999999999999    7889999999999       99999999999999999999988754     2345678999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHh--------cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           88 CPQFNGINEHLTAQEMLECFSAL--------RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      +||++.+++.+|+.||+.+....        .+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus        83 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  162 (241)
T cd03256          83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQ  162 (241)
T ss_pred             EcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999764211        1111223345688899999999888999999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|||||||+|||+.++
T Consensus       163 p~llllDEPt~~LD~~~~  180 (241)
T cd03256         163 PKLILADEPVASLDPASS  180 (241)
T ss_pred             CCEEEEeCccccCCHHHH
Confidence            999999999999999764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.5e-38  Score=248.82  Aligned_cols=153  Identities=23%  Similarity=0.342  Sum_probs=133.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q~   91 (178)
                      .++++||||++++| +    .+|+|+||+|||       ||++.+.|+.+|++|++.++|.++... .++++.++|+||+
T Consensus        13 ~~~l~~vs~~i~~g-~----~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~   80 (211)
T cd03264          13 KRALDGVSLTLGPG-M----YGLLGPNGAGKT-------TLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQE   80 (211)
T ss_pred             EEEEcceeEEEcCC-c----EEEECCCCCCHH-------HHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCC
Confidence            46999999999997 4    459999999999       999999999999999999999877543 3456789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++.+|+.||+.+.....+....+..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|
T Consensus        81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  160 (211)
T cd03264          81 FGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAG  160 (211)
T ss_pred             CcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            99999999999998765544433334456788999999999888999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       161 LD~~~~  166 (211)
T cd03264         161 LDPEER  166 (211)
T ss_pred             CCHHHH
Confidence            999764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.4e-38  Score=252.61  Aligned_cols=154  Identities=20%  Similarity=0.166  Sum_probs=132.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~   89 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++...  .+ .+++++|+|
T Consensus        13 ~~~l~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   81 (236)
T cd03219          13 LVALDDVSFSVRPGE----IHGLIGPNGAGKT-------TLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTF   81 (236)
T ss_pred             EEEecCceEEecCCc----EEEEECCCCCCHH-------HHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence            469999999999999    8889999999999       999999999999999999999877542  22 246799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCC----------CCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIP----------GVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~----------~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      |++.+++.+|++||+.+........          ..+..+.+.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus        82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  161 (236)
T cd03219          82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD  161 (236)
T ss_pred             cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            9999999999999998764332111          122345678899999999888999999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++++|||||+|||+.++
T Consensus       162 p~llllDEPt~~LD~~~~  179 (236)
T cd03219         162 PKLLLLDEPAAGLNPEET  179 (236)
T ss_pred             CCEEEEcCCcccCCHHHH
Confidence            999999999999998764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=1.4e-38  Score=251.61  Aligned_cols=153  Identities=21%  Similarity=0.217  Sum_probs=132.9

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hhh-ccceEE
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQY-LSGIGY   87 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~-~~~ig~   87 (178)
                      ++|+++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...     .+. +++++|
T Consensus        24 ~~l~~~s~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~   92 (228)
T PRK10584         24 SILTGVELVVKRGE----TIALIGESGSGKS-------TLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF   92 (228)
T ss_pred             EEEeccEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEE
Confidence            58999999999999    7889999999999       999999999999999999999877542     122 257999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +||++.+++.+|+.||+.+..........+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||
T Consensus        93 ~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDE  172 (228)
T PRK10584         93 VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADE  172 (228)
T ss_pred             EEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99999999999999999875433333333445678899999999988899999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       173 Pt~~LD~~~~  182 (228)
T PRK10584        173 PTGNLDRQTG  182 (228)
T ss_pred             CCCCCCHHHH
Confidence            9999998754

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-38  Score=260.62  Aligned_cols=153  Identities=17%  Similarity=0.129  Sum_probs=132.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig   86 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|+++..      ..+.++++|
T Consensus        20 ~~~L~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig   88 (290)
T PRK13634         20 RRALYDVNVSIPSGS----YVAIIGHTGSGKS-------TLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVG   88 (290)
T ss_pred             ccceeeEEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEE
Confidence            469999999999999    8889999999999       99999999999999999999998742      345667899


Q ss_pred             EecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           87 YCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        87 ~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      ||||++  .++ ..|+.||+.+.....+.+..+..+++.++++.++|. +..++++.+|||||||||+|||||+.+|++|
T Consensus        89 ~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~ll  167 (290)
T PRK13634         89 IVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVL  167 (290)
T ss_pred             EEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999986  344 579999998765544444444556788999999997 6789999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       168 llDEPt~~LD~~~~  181 (290)
T PRK13634        168 VLDEPTAGLDPKGR  181 (290)
T ss_pred             EEECCcccCCHHHH
Confidence            99999999999754

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=2.6e-38  Score=252.38  Aligned_cols=154  Identities=22%  Similarity=0.252  Sum_probs=134.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+++||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|.++..  ..++++.++|+||
T Consensus        14 ~~~l~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   82 (242)
T cd03295          14 KKAVNNLNLEIAKGE----FLVLIGPSGSGKT-------TTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQ   82 (242)
T ss_pred             ceEeeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEcc
Confidence            469999999999999    7889999999999       99999999999999999999987754  3345678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc--cccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE--YRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      ++.+++.+|++||+.++....+....+..+.+.++++.+++.+  ..++++.+|||||||||+|||||+.+|+++|||||
T Consensus        83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  162 (242)
T cd03295          83 QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP  162 (242)
T ss_pred             CccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            9999999999999987654443332334557889999999985  78999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       163 t~~LD~~~~  171 (242)
T cd03295         163 FGALDPITR  171 (242)
T ss_pred             cccCCHHHH
Confidence            999999764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-38  Score=258.56  Aligned_cols=154  Identities=14%  Similarity=0.050  Sum_probs=133.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++..  ..++++.++|+||
T Consensus        18 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   86 (274)
T PRK13647         18 TKALKGLSLSIPEGS----KTALLGPNGAGKS-------TLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQ   86 (274)
T ss_pred             CeeeeeEEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEec
Confidence            469999999999999    8889999999999       99999999999999999999988754  3455678999999


Q ss_pred             CCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           91 FNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        91 ~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      ++. .++..|+.+|+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        87 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt  166 (274)
T PRK13647         87 DPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM  166 (274)
T ss_pred             ChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            973 4557899999987544334333344567889999999998899999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       167 ~~LD~~~~  174 (274)
T PRK13647        167 AYLDPRGQ  174 (274)
T ss_pred             cCCCHHHH
Confidence            99999764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=2.5e-38  Score=250.02  Aligned_cols=153  Identities=18%  Similarity=0.114  Sum_probs=131.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC-----Cccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS-----PFQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~-----~~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.     +|++|++.++|.++..    ...+++
T Consensus        13 ~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (227)
T cd03260          13 KHALKDISLDIPKGE----ITALIGPSGCGKS-------TLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRR   81 (227)
T ss_pred             ceeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHh
Confidence            479999999999999    8889999999999       9999999999     9999999999988754    334567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcCCCccccCc--CCCCChHHHHHHHHHHHHhCCC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLGLTEYRHRV--SGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      +++|+||++.++ .+|++||+.+.....+.... +..+++.++++.+++.+..++.  +.+|||||||||+|||||+.+|
T Consensus        82 ~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p  160 (227)
T cd03260          82 RVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP  160 (227)
T ss_pred             hEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC
Confidence            899999999887 89999999876544332221 2346788899999998777766  5999999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~~  177 (178)
                      +++||||||+|||+.++
T Consensus       161 ~llllDEPt~~LD~~~~  177 (227)
T cd03260         161 EVLLLDEPTSALDPIST  177 (227)
T ss_pred             CEEEEeCCCccCCHHHH
Confidence            99999999999999764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=2.3e-38  Score=247.76  Aligned_cols=154  Identities=16%  Similarity=0.153  Sum_probs=133.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v   88 (178)
                      .++++++||++.+||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..    ...++++++|+
T Consensus        13 ~~~l~~~s~~i~~G~----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~   81 (213)
T cd03262          13 FHVLKGIDLTVKKGE----VVVIIGPSGSGKS-------TLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMV   81 (213)
T ss_pred             eEeecCceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEE
Confidence            469999999999999    7889999999999       99999999999999999999987732    23456789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           89 PQFNGINEHLTAQEMLECFSA-LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      ||++.+++.+|+.||+.++.. ..+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||
T Consensus        82 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  161 (213)
T cd03262          82 FQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE  161 (213)
T ss_pred             ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            999999999999999987542 2232222344568889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       162 P~~~LD~~~~  171 (213)
T cd03262         162 PTSALDPELV  171 (213)
T ss_pred             CccCCCHHHH
Confidence            9999998764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-38  Score=258.66  Aligned_cols=153  Identities=16%  Similarity=0.139  Sum_probs=135.3

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      ++|+||||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+++++|.++..  ..++++.++|+||+
T Consensus        21 ~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~   89 (279)
T PRK13650         21 YTLNDVSFHVKQGE----WLSIIGHNGSGKS-------TTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQN   89 (279)
T ss_pred             eeeeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcC
Confidence            59999999999999    8889999999999       99999999999999999999998753  34567789999999


Q ss_pred             C-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           92 N-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        92 ~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      + .+++..|+.||+.+.....+....+..+++.++++.++|.+..++.+.+|||||||||+|||||+.+|++|||||||+
T Consensus        90 ~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~  169 (279)
T PRK13650         90 PDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATS  169 (279)
T ss_pred             hHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence            7 467788999999876544444444455678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       170 ~LD~~~~  176 (279)
T PRK13650        170 MLDPEGR  176 (279)
T ss_pred             cCCHHHH
Confidence            9999754

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=2.4e-38  Score=268.85  Aligned_cols=156  Identities=13%  Similarity=0.144  Sum_probs=136.5

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEe
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYC   88 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v   88 (178)
                      +..++|++|||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|+++..  ..++++++|||
T Consensus        14 ~~~~vL~~vs~~i~~Ge----iv~liGpNGaGKS-------TLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v   82 (402)
T PRK09536         14 GDTTVLDGVDLSVREGS----LVGLVGPNGAGKT-------TLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV   82 (402)
T ss_pred             CCEEEEEeeEEEECCCC----EEEEECCCCchHH-------HHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence            34579999999999999    8889999999999       99999999999999999999998764  35667889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhc--CCC--CCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           89 PQFNGINEHLTAQEMLECFSALR--GIP--GVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~--~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      +|++.+++++|++|++.+....+  ...  ..+.++++.++++.+++.+..++++.+|||||||||+|||||+++|++||
T Consensus        83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL  162 (402)
T PRK09536         83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL  162 (402)
T ss_pred             ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999998743211  111  23345678999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+|||+.++
T Consensus       163 LDEPtsgLD~~~~  175 (402)
T PRK09536        163 LDEPTASLDINHQ  175 (402)
T ss_pred             EECCcccCCHHHH
Confidence            9999999999754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-38  Score=259.06  Aligned_cols=153  Identities=15%  Similarity=0.098  Sum_probs=132.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig   86 (178)
                      .++|+||||+|.+||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|.++..      ..+++++||
T Consensus        20 ~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig   88 (286)
T PRK13646         20 HQAIHDVNTEFEQGK----YYAIVGQTGSGKS-------TLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIG   88 (286)
T ss_pred             cCceeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheE
Confidence            369999999999999    8889999999999       99999999999999999999988743      245678899


Q ss_pred             EecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           87 YCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        87 ~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      ||||++  .+++ .|+.||+.+.....+.+..+..+++.++++.+|+. +..++.+.+|||||||||+|||||+.+|++|
T Consensus        89 ~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~il  167 (286)
T PRK13646         89 MVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDII  167 (286)
T ss_pred             EEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence            999986  3444 59999998765444444444566788999999997 6788999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       168 llDEPt~~LD~~~~  181 (286)
T PRK13646        168 VLDEPTAGLDPQSK  181 (286)
T ss_pred             EEECCcccCCHHHH
Confidence            99999999999764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-38  Score=260.38  Aligned_cols=153  Identities=16%  Similarity=0.157  Sum_probs=132.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc-----------------
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM-----------------   76 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~-----------------   76 (178)
                      ++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+++++|.++.                 
T Consensus        21 ~~l~~vsl~i~~Ge----~v~iiG~nGsGKS-------TLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~   89 (305)
T PRK13651         21 KALDNVSVEINQGE----FIAIIGQTGSGKT-------TFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVI   89 (305)
T ss_pred             cceeeeEEEEeCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCcEEEEeceeccccccccccccccccccc
Confidence            69999999999999    8889999999999       9999999999999999999876541                 


Q ss_pred             ---------cHHhhccceEEecCCC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChH
Q psy860           77 ---------HLFQYLSGIGYCPQFN-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGG  145 (178)
Q Consensus        77 ---------~~~~~~~~ig~v~Q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG  145 (178)
                               ...+++++||||||++ ..++..||+||+.+.....+.+..+..+++.++++.+||. +..++++.+||||
T Consensus        90 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG  169 (305)
T PRK13651         90 QKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGG  169 (305)
T ss_pred             ccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHH
Confidence                     2345677899999986 2344679999998766555555445567789999999997 7899999999999


Q ss_pred             HHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          146 NKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       146 qkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |||||+|||||+.+|++|||||||+|||+.++
T Consensus       170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~  201 (305)
T PRK13651        170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGV  201 (305)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence            99999999999999999999999999999764

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=3.3e-38  Score=262.58  Aligned_cols=154  Identities=16%  Similarity=0.142  Sum_probs=134.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++++||||+|..||    +.+|+|+||+|||       ||++.++|+.+|++|+|.++|.++...     ..+++.|+|
T Consensus        34 ~~~l~~vsl~i~~Ge----~~~lvG~sGsGKS-------TLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~  102 (331)
T PRK15079         34 LKAVDGVTLRLYEGE----TLGVVGESGCGKS-------TFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQM  102 (331)
T ss_pred             eEEEeeEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEE
Confidence            579999999999999    8889999999999       999999999999999999999987542     345678999


Q ss_pred             ecCCC--CCCCCCCHHHHHHHHHHhc--CCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           88 CPQFN--GINEHLTAQEMLECFSALR--GIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        88 v~Q~~--~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      |||++  .+++.+|+.+++.+.....  ..+..+.++++.++++.+++. +..++++++|||||||||+|||||+.+|++
T Consensus       103 v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l  182 (331)
T PRK15079        103 IFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL  182 (331)
T ss_pred             EecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            99997  5888999999998754432  233344556788999999995 578999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      ||+||||+|||+.++
T Consensus       183 lilDEPts~LD~~~~  197 (331)
T PRK15079        183 IICDEPVSALDVSIQ  197 (331)
T ss_pred             EEEeCCCccCCHHHH
Confidence            999999999998764

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=3.5e-38  Score=250.78  Aligned_cols=154  Identities=20%  Similarity=0.222  Sum_probs=133.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q~   91 (178)
                      .++|++|||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++... ...++.++|+||+
T Consensus        14 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~   82 (236)
T TIGR03864        14 RRALDDVSFTVRPGE----FVALLGPNGAGKS-------TLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQ   82 (236)
T ss_pred             EEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCC
Confidence            469999999999999    8889999999999       999999999999999999999877542 2334579999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++.+|+.+|+.+.....+....+..+.+.++++.+++.+..++.+.+|||||||||+|||||+.+|+++||||||+|
T Consensus        83 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~  162 (236)
T TIGR03864        83 PTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVG  162 (236)
T ss_pred             CCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence            98888999999998765443332223445688899999999888999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       163 LD~~~~  168 (236)
T TIGR03864       163 LDPASR  168 (236)
T ss_pred             CCHHHH
Confidence            999764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=2.6e-38  Score=247.78  Aligned_cols=151  Identities=20%  Similarity=0.252  Sum_probs=128.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .+++++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.   ..+++++|+||++
T Consensus        12 ~~~l~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~---~~~~~i~~v~q~~   77 (213)
T cd03235          12 HPVLEDVSFEVKPGE----FLAIVGPNGAGKS-------TLLKAILGLLKPTSGSIRVFGKPLE---KERKRIGYVPQRR   77 (213)
T ss_pred             EEeeecceeEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCCEEEECCccHH---HHHhheEEecccc
Confidence            469999999999999    7889999999999       9999999999999999999998764   3566899999998


Q ss_pred             CCC--CCCCHHHHHHHHHHhcC----CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           93 GIN--EHLTAQEMLECFSALRG----IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        93 ~l~--~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      .++  +.+|+.||+.+......    ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||
T Consensus        78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD  157 (213)
T cd03235          78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD  157 (213)
T ss_pred             ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            763  34899999987432211    111223456888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       158 EPt~~LD~~~~  168 (213)
T cd03235         158 EPFAGVDPKTQ  168 (213)
T ss_pred             CCcccCCHHHH
Confidence            99999999764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.3e-38  Score=250.87  Aligned_cols=154  Identities=21%  Similarity=0.173  Sum_probs=132.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...     ..+++.++|
T Consensus        15 ~~il~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   83 (243)
T TIGR02315        15 KQALKNINLNINPGE----FVAIIGPSGAGKS-------TLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGM   83 (243)
T ss_pred             cceeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEE
Confidence            469999999999999    8889999999999       999999999999999999999876532     235678999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHh--------cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           88 CPQFNGINEHLTAQEMLECFSAL--------RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      +||++.+++.+|+.||+.+....        ......+..+++.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus        84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  163 (243)
T TIGR02315        84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQ  163 (243)
T ss_pred             EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999753211        1111223345788899999999888999999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|+|||||+|||+.++
T Consensus       164 p~llllDEPt~~LD~~~~  181 (243)
T TIGR02315       164 PDLILADEPIASLDPKTS  181 (243)
T ss_pred             CCEEEEeCCcccCCHHHH
Confidence            999999999999999764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=6e-38  Score=251.14  Aligned_cols=154  Identities=19%  Similarity=0.144  Sum_probs=133.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----------HHhhc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----------LFQYL   82 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----------~~~~~   82 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..          ...++
T Consensus        16 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK11264         16 QTVLHGIDLEVKPGE----VVAIIGPSGSGKT-------TLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLR   84 (250)
T ss_pred             eeeeccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhh
Confidence            469999999999999    7889999999999       99999999999999999999987642          23456


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSA-LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +.++|+||++.+++..|+.||+.+... .......+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~  164 (250)
T PRK11264         85 QHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPE  164 (250)
T ss_pred             hhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCC
Confidence            789999999999999999999987432 2222222334568889999999988899999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|||||||+|||+.++
T Consensus       165 lllLDEPt~~LD~~~~  180 (250)
T PRK11264        165 VILFDEPTSALDPELV  180 (250)
T ss_pred             EEEEeCCCccCCHHHH
Confidence            9999999999999764

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-38  Score=257.60  Aligned_cols=153  Identities=17%  Similarity=0.150  Sum_probs=133.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig   86 (178)
                      .++|+||||+|.+||    +.+|+|+||+|||       ||++++.|+.+|++|+++++|.++..      ..+.++.+|
T Consensus        19 ~~~l~~vsl~i~~Ge----~v~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig   87 (288)
T PRK13643         19 SRALFDIDLEVKKGS----YTALIGHTGSGKS-------TLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVG   87 (288)
T ss_pred             ccceeeeEEEEcCCC----EEEEECCCCChHH-------HHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEE
Confidence            369999999999999    8889999999999       99999999999999999999998642      345677899


Q ss_pred             EecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           87 YCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        87 ~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      ||||++  .++ ..|+.|++.+.....+.+..+..+++.++++.+++. +..++.+.+|||||||||+|||||+.+|++|
T Consensus        88 ~v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~il  166 (288)
T PRK13643         88 VVFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVL  166 (288)
T ss_pred             EEecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence            999987  454 469999998866554444444566788999999996 5789999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       167 lLDEPt~gLD~~~~  180 (288)
T PRK13643        167 VLDEPTAGLDPKAR  180 (288)
T ss_pred             EEECCccCCCHHHH
Confidence            99999999999764

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-38  Score=252.63  Aligned_cols=151  Identities=21%  Similarity=0.235  Sum_probs=132.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++++||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..   .+..++|+||++
T Consensus        14 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~v~q~~   79 (255)
T PRK11248         14 KPALEDINLTLESGE----LLVVLGPSGCGKT-------TLLNLIAGFVPYQHGSITLDGKPVEG---PGAERGVVFQNE   79 (255)
T ss_pred             eeeEeeeeEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCC---CCCcEEEEeCCC
Confidence            469999999999999    7889999999999       99999999999999999999987653   234689999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L  159 (255)
T PRK11248         80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL  159 (255)
T ss_pred             ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            99999999999987544433333334457889999999998889999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       160 D~~~~  164 (255)
T PRK11248        160 DAFTR  164 (255)
T ss_pred             CHHHH
Confidence            99764

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=8e-38  Score=249.16  Aligned_cols=154  Identities=18%  Similarity=0.123  Sum_probs=133.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v   88 (178)
                      .++++|+||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|+++++|.++..    ...++++++|+
T Consensus        14 ~~il~~~s~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~   82 (240)
T PRK09493         14 TQVLHNIDLNIDQGE----VVVIIGPSGSGKS-------TLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMV   82 (240)
T ss_pred             eEEeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEE
Confidence            469999999999999    7889999999999       99999999999999999999988753    23456789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           89 PQFNGINEHLTAQEMLECFSA-LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      ||++.+++.+|+.+|+.+... ..+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||
T Consensus        83 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  162 (240)
T PRK09493         83 FQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE  162 (240)
T ss_pred             ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            999999999999999977532 2222223344568889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       163 P~~~LD~~~~  172 (240)
T PRK09493        163 PTSALDPELR  172 (240)
T ss_pred             CcccCCHHHH
Confidence            9999999764

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1e-37  Score=249.57  Aligned_cols=153  Identities=19%  Similarity=0.178  Sum_probs=132.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-----ccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-----AAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-----~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++++||||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|+     +|++.++|.++..    ....++
T Consensus        14 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   82 (247)
T TIGR00972        14 KEALKNINLDIPKNQ----VTALIGPSGCGKS-------TLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRR   82 (247)
T ss_pred             eeeecceeEEECCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHh
Confidence            469999999999999    8889999999999       9999999999988     9999999988753    334567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++ .|+.||+.+.....+. ...+..+++.++++.+++.    +..++++.+|||||||||+|||||+.
T Consensus        83 ~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~  161 (247)
T TIGR00972        83 RVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV  161 (247)
T ss_pred             heEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence            8999999998888 9999999876544331 2223345788899999997    77889999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       162 ~p~llllDEPt~~LD~~~~  180 (247)
T TIGR00972       162 EPEVLLLDEPTSALDPIAT  180 (247)
T ss_pred             CCCEEEEeCCcccCCHHHH
Confidence            9999999999999999764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=9.2e-38  Score=253.09  Aligned_cols=154  Identities=15%  Similarity=0.109  Sum_probs=132.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|++|||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++...     ...++.++|
T Consensus        20 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~   88 (269)
T PRK11831         20 RCIFDNISLTVPRGK----ITAIMGPSGIGKT-------TLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSM   88 (269)
T ss_pred             EEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEE
Confidence            469999999999999    8889999999999       999999999999999999999877532     234667999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           88 CPQFNGINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      +||++.+++.+|+.||+.+..... .....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||
T Consensus        89 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD  168 (269)
T PRK11831         89 LFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD  168 (269)
T ss_pred             EecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            999999999999999998753322 1222223456778899999998899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       169 EPt~~LD~~~~  179 (269)
T PRK11831        169 EPFVGQDPITM  179 (269)
T ss_pred             CCCccCCHHHH
Confidence            99999999764

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.2e-37  Score=242.76  Aligned_cols=152  Identities=20%  Similarity=0.202  Sum_probs=134.1

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQ   90 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q   90 (178)
                      ..++|++|||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++... ...++.++|++|
T Consensus        13 ~~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~   81 (204)
T PRK13538         13 ERILFSGLSFTLNAGE----LVQIEGPNGAGKT-------SLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH   81 (204)
T ss_pred             CEEEEecceEEECCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence            3569999999999999    8889999999999       999999999999999999999877542 345678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++.+|+.||+.++....+.   +..+++.++++.+++.+..++++.+||||||||++|||||+.+|++++|||||+
T Consensus        82 ~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  158 (204)
T PRK13538         82 QPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT  158 (204)
T ss_pred             ccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            99899999999999876544321   335678899999999888899999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       159 ~LD~~~~  165 (204)
T PRK13538        159 AIDKQGV  165 (204)
T ss_pred             cCCHHHH
Confidence            9998764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.2e-38  Score=255.28  Aligned_cols=154  Identities=18%  Similarity=0.087  Sum_probs=134.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~   89 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|+++|.++..   ...+++.++|+|
T Consensus        15 ~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   83 (274)
T PRK13644         15 TPALENINLVIKKGE----YIGIIGKNGSGKS-------TLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVF   83 (274)
T ss_pred             CceeeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEE
Confidence            469999999999999    8889999999999       99999999999999999999998754   245567899999


Q ss_pred             CCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           90 QFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        90 Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      |++. .++..|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||||
T Consensus        84 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP  163 (274)
T PRK13644         84 QNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEV  163 (274)
T ss_pred             EChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            9975 466789999998765444443334456788899999999989999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       164 t~gLD~~~~  172 (274)
T PRK13644        164 TSMLDPDSG  172 (274)
T ss_pred             cccCCHHHH
Confidence            999999764

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.7e-38  Score=255.46  Aligned_cols=154  Identities=16%  Similarity=0.102  Sum_probs=132.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig   86 (178)
                      .++|+||||+|.+||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|+++..      ....+++++
T Consensus        20 ~~~l~~vsl~i~~Ge----~~~iiG~NGaGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig   88 (287)
T PRK13641         20 KKGLDNISFELEEGS----FVALVGHTGSGKS-------TLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVS   88 (287)
T ss_pred             ccceeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceE
Confidence            369999999999999    8889999999999       99999999999999999999988743      234567899


Q ss_pred             EecCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           87 YCPQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        87 ~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      |+||++. .++.+|+.||+.+..........+..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus        89 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLl  168 (287)
T PRK13641         89 LVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILC  168 (287)
T ss_pred             EEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            9999973 233689999998754433333334456788999999997 68899999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+|||+.++
T Consensus       169 LDEPt~gLD~~~~  181 (287)
T PRK13641        169 LDEPAAGLDPEGR  181 (287)
T ss_pred             EECCCCCCCHHHH
Confidence            9999999999764

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=8.7e-38  Score=245.92  Aligned_cols=152  Identities=24%  Similarity=0.257  Sum_probs=131.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~   89 (178)
                      .+++++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...  .+ .++.++|+|
T Consensus        13 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   81 (222)
T cd03224          13 SQILFGVSLTVPEGE----IVALLGRNGAGKT-------TLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVP   81 (222)
T ss_pred             eeEeeeeeEEEcCCe----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEec
Confidence            479999999999999    7889999999999       999999999999999999999876542  22 356799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      |++.+++.+|++||+.++.....  ..+..+++.++++.+ ++.+..++++.+|||||||||+|||||+.+|++++||||
T Consensus        82 q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  159 (222)
T cd03224          82 EGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP  159 (222)
T ss_pred             cccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            99999999999999987654332  223345677888888 577888999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       160 t~~LD~~~~  168 (222)
T cd03224         160 SEGLAPKIV  168 (222)
T ss_pred             cccCCHHHH
Confidence            999999764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.7e-38  Score=259.02  Aligned_cols=153  Identities=14%  Similarity=0.120  Sum_probs=131.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---------------
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---------------   77 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---------------   77 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|+++|.++..               
T Consensus        39 ~~~L~~vsl~i~~Ge----~~~I~G~nGsGKS-------TLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~  107 (320)
T PRK13631         39 LVALNNISYTFEKNK----IYFIIGNSGSGKS-------TLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKK  107 (320)
T ss_pred             ccceeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccc
Confidence            469999999999999    8889999999999       99999999999999999999977642               


Q ss_pred             ---HHhhccceEEecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHH
Q psy860           78 ---LFQYLSGIGYCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLS  151 (178)
Q Consensus        78 ---~~~~~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~  151 (178)
                         ..++++.++||||++  .+++ .|+.||+.+.....+.+..+..+++.++++.+++. +..++.+.+|||||||||+
T Consensus       108 ~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRva  186 (320)
T PRK13631        108 IKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVA  186 (320)
T ss_pred             cchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHH
Confidence               245678899999997  3554 59999998765433333334456788999999997 6889999999999999999


Q ss_pred             HHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          152 TAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       152 IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |||||+.+|++|||||||+|||+.++
T Consensus       187 iAraL~~~p~iLLLDEPtsgLD~~~~  212 (320)
T PRK13631        187 IAGILAIQPEILIFDEPTAGLDPKGE  212 (320)
T ss_pred             HHHHHHcCCCEEEEECCccCCCHHHH
Confidence            99999999999999999999999764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.5e-37  Score=245.31  Aligned_cols=153  Identities=16%  Similarity=0.115  Sum_probs=129.0

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEEe
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGYC   88 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~v   88 (178)
                      ++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...     ..+++.++|+
T Consensus        19 ~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~   87 (228)
T cd03257          19 KALDDVSFSIKKGE----TLGLVGESGSGKS-------TLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV   87 (228)
T ss_pred             eeecCceeEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEE
Confidence            69999999999999    8889999999999       999999999999999999999887542     3456789999


Q ss_pred             cCCC--CCCCCCCHHHHHHHHHHhcCCCCC-ChhHH-HHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           89 PQFN--GINEHLTAQEMLECFSALRGIPGV-KSGPI-IDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        89 ~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~-~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      ||++  .+++.+|+++|+.+.......... +..+. +.++++.+++. ...++++.+|||||||||+|||||+.+|++|
T Consensus        88 ~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  167 (228)
T cd03257          88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLL  167 (228)
T ss_pred             ecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEE
Confidence            9998  467789999999875433322111 11122 35788999995 6789999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       168 lLDEPt~~LD~~~~  181 (228)
T cd03257         168 IADEPTSALDVSVQ  181 (228)
T ss_pred             EecCCCCCCCHHHH
Confidence            99999999999764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.1e-38  Score=254.89  Aligned_cols=154  Identities=14%  Similarity=0.083  Sum_probs=133.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc----cHHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM----HLFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~----~~~~~~~~ig~v   88 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.    ...++++.++|+
T Consensus        19 ~~~l~~vs~~i~~Ge----~~~i~G~nGaGKS-------TLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v   87 (283)
T PRK13636         19 THALKGININIKKGE----VTAILGGNGAGKS-------TLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMV   87 (283)
T ss_pred             CeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEE
Confidence            469999999999999    8889999999999       9999999999999999999998873    134567789999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      ||++. .++..|++||+.+.....+.+..+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        88 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDE  167 (283)
T PRK13636         88 FQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE  167 (283)
T ss_pred             ecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            99974 34568999999875544444434445678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       168 Pt~gLD~~~~  177 (283)
T PRK13636        168 PTAGLDPMGV  177 (283)
T ss_pred             CccCCCHHHH
Confidence            9999999764

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=1.2e-37  Score=245.31  Aligned_cols=154  Identities=19%  Similarity=0.177  Sum_probs=134.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|++|||++..||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++...     ...+++++|
T Consensus        18 ~~il~~vs~~i~~G~----~~~I~G~nGsGKS-------tLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   86 (220)
T TIGR02982        18 KQVLFDINLEINPGE----IVILTGPSGSGKT-------TLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGY   86 (220)
T ss_pred             eeEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEE
Confidence            579999999999999    8889999999999       999999999999999999999877532     235678999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcC-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRG-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      +||++.+++.+|+.||+.++..... ....+..+++.++++.+++.+..++.+.+||+|||||++|||||+.+|++++||
T Consensus        87 ~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlD  166 (220)
T TIGR02982        87 IFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLAD  166 (220)
T ss_pred             EcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            9999999999999999987654332 222334457889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       167 EP~~~LD~~~~  177 (220)
T TIGR02982       167 EPTAALDSKSG  177 (220)
T ss_pred             CCCCcCCHHHH
Confidence            99999999764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-37  Score=243.73  Aligned_cols=152  Identities=16%  Similarity=0.135  Sum_probs=131.7

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI   94 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l   94 (178)
                      +++++||++.+||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++......++.++|+||++.+
T Consensus        13 ~~~~~s~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~   81 (213)
T TIGR01277        13 LPMEFDLNVADGE----IVAIMGPSGAGKS-------TLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNL   81 (213)
T ss_pred             cceeeEEEEeCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCcc
Confidence            5789999999999    7889999999999       9999999999999999999998876544456789999999999


Q ss_pred             CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860           95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus        95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                      ++.+|+.||+.+..........+.++++.++++.+++.+..++.+.+||+|||||++|||||+.+|++++|||||+|||+
T Consensus        82 ~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~  161 (213)
T TIGR01277        82 FAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP  161 (213)
T ss_pred             CCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence            99999999997643221111223355688899999999888999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy860          175 YNT  177 (178)
Q Consensus       175 ~~~  177 (178)
                      .++
T Consensus       162 ~~~  164 (213)
T TIGR01277       162 LLR  164 (213)
T ss_pred             HHH
Confidence            754

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=1.1e-37  Score=243.76  Aligned_cols=150  Identities=17%  Similarity=0.169  Sum_probs=129.3

Q ss_pred             cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCC
Q psy860           17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINE   96 (178)
Q Consensus        17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~   96 (178)
                      .++||+|.+||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|.++......++.++|+||++.+++
T Consensus        15 ~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~   83 (211)
T cd03298          15 MHFDLTFAQGE----ITAIVGPSGSGKS-------TLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA   83 (211)
T ss_pred             cceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCC
Confidence            39999999999    7889999999999       999999999999999999999887654334568999999999999


Q ss_pred             CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860           97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus        97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      .+|++||+.+..........+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+
T Consensus        84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~  163 (211)
T cd03298          84 HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL  163 (211)
T ss_pred             CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            99999999764321111112335568889999999988899999999999999999999999999999999999999976


Q ss_pred             C
Q psy860          177 T  177 (178)
Q Consensus       177 ~  177 (178)
                      +
T Consensus       164 ~  164 (211)
T cd03298         164 R  164 (211)
T ss_pred             H
Confidence            4

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=8.9e-38  Score=232.66  Aligned_cols=156  Identities=18%  Similarity=0.127  Sum_probs=140.1

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--------cHHhh
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--------HLFQY   81 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--------~~~~~   81 (178)
                      .|...+|.||+|+.+.||    -..++||+|+|||       +|++.++-+.-|.+|+..+-+....        ...++
T Consensus        12 yg~~q~lfdi~l~~~~ge----tlvllgpsgagks-------sllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l   80 (242)
T COG4161          12 YGAHQALFDITLDCPEGE----TLVLLGPSGAGKS-------SLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL   80 (242)
T ss_pred             cccchheeeeeecCCCCC----EEEEECCCCCchH-------HHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence            366789999999999999    6669999999999       9999999999999999877765431        13568


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHH-HHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLEC-FSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      |+.+|+|||..+++|++||.||+.. +.+..++++++.+.++.++|+++.+.+++|+.|-.|||||||||+|||||+++|
T Consensus        81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkp  160 (242)
T COG4161          81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEP  160 (242)
T ss_pred             HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCC
Confidence            8899999999999999999999876 456678888888899999999999999999999999999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~  176 (178)
                      ++|++||||++|||.-
T Consensus       161 qvllfdeptaaldpei  176 (242)
T COG4161         161 QVLLFDEPTAALDPEI  176 (242)
T ss_pred             cEEeecCcccccCHHH
Confidence            9999999999999963

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-37  Score=247.70  Aligned_cols=154  Identities=18%  Similarity=0.134  Sum_probs=132.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--------cHHhhccc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--------HLFQYLSG   84 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--------~~~~~~~~   84 (178)
                      .++|+++||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.        .....+++
T Consensus        15 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   83 (242)
T PRK11124         15 HQALFDITLDCPQGE----TLVLLGPSGAGKS-------SLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRN   83 (242)
T ss_pred             eeeEeeeeeEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhh
Confidence            479999999999999    8889999999999       9999999999999999999998762        12345678


Q ss_pred             eEEecCCCCCCCCCCHHHHHHHH-HHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           85 IGYCPQFNGINEHLTAQEMLECF-SALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        85 ig~v~Q~~~l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      ++|+||++.+++.+|+.||+.++ ....+....+..+++.++++.+|+.+..++.+.+|||||||||+|||||+.+|+++
T Consensus        84 i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  163 (242)
T PRK11124         84 VGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVL  163 (242)
T ss_pred             eEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999999753 22333322233456888999999998889999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      +|||||+|||+.++
T Consensus       164 ilDEPt~~LD~~~~  177 (242)
T PRK11124        164 LFDEPTAALDPEIT  177 (242)
T ss_pred             EEcCCCCcCCHHHH
Confidence            99999999999764

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-37  Score=253.93  Aligned_cols=154  Identities=16%  Similarity=0.087  Sum_probs=135.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ..++++.++|+||
T Consensus        20 ~~~l~~vsl~i~~Ge----~~~i~G~nGaGKS-------TLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q   88 (279)
T PRK13635         20 TYALKDVSFSVYEGE----WVAIVGHNGSGKS-------TLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQ   88 (279)
T ss_pred             ccceeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEe
Confidence            359999999999999    7889999999999       99999999999999999999998754  2345678999999


Q ss_pred             CCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           91 FNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        91 ~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      ++. +++..|+.||+.+.....+....+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        89 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt  168 (279)
T PRK13635         89 NPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT  168 (279)
T ss_pred             CHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            974 6778899999987654444433444567889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       169 ~gLD~~~~  176 (279)
T PRK13635        169 SMLDPRGR  176 (279)
T ss_pred             ccCCHHHH
Confidence            99999764

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=2.7e-37  Score=239.68  Aligned_cols=151  Identities=19%  Similarity=0.192  Sum_probs=132.4

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQ   90 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q   90 (178)
                      ..++|++|||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++... ...++.++|++|
T Consensus        12 ~~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (198)
T TIGR01189        12 ERMLFEGLSFTLNAGE----ALQVTGPNGIGKT-------TLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH   80 (198)
T ss_pred             CEEEEeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence            3579999999999999    7889999999999       999999999999999999999876543 234578999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++.+|+.+|+.++.....   .+ .+.+.++++.+++.+..++++.+|||||||||+||||++.+|++++|||||+
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~---~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~  156 (198)
T TIGR01189        81 LPGLKPELSALENLHFWAAIHG---GA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT  156 (198)
T ss_pred             CcccccCCcHHHHHHHHHHHcC---Cc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            9888888999999987654332   12 3467889999999988899999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       157 ~LD~~~~  163 (198)
T TIGR01189       157 ALDKAGV  163 (198)
T ss_pred             CCCHHHH
Confidence            9998754

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.9e-38  Score=239.87  Aligned_cols=151  Identities=19%  Similarity=0.175  Sum_probs=141.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      ..+|+|||++|..||    +..++||+||||+       ||+..+.|+.+|+.|.|.++++.+..+..   .-|.|||++
T Consensus        18 ~~~le~vsL~ia~ge----~vv~lGpSGcGKT-------TLLnl~AGf~~P~~G~i~l~~r~i~gPga---ergvVFQ~~   83 (259)
T COG4525          18 RSALEDVSLTIASGE----LVVVLGPSGCGKT-------TLLNLIAGFVTPSRGSIQLNGRRIEGPGA---ERGVVFQNE   83 (259)
T ss_pred             hhhhhccceeecCCC----EEEEEcCCCccHH-------HHHHHHhcCcCcccceEEECCEeccCCCc---cceeEeccC
Confidence            469999999999999    9999999999999       99999999999999999999999877633   358999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .++|.+|+.+|+.|.....++++.+.++++.+.+..+||.+..++++-+|||||||||.|||||+-+|++|+||||+++|
T Consensus        84 ~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl  163 (259)
T COG4525          84 ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL  163 (259)
T ss_pred             ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhH
Confidence            99999999999999999999998888889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |.-+|
T Consensus       164 Da~tR  168 (259)
T COG4525         164 DALTR  168 (259)
T ss_pred             HHHHH
Confidence            97654

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=1.9e-37  Score=246.86  Aligned_cols=158  Identities=16%  Similarity=0.115  Sum_probs=134.7

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEE
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGY   87 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~   87 (178)
                      ..|..++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.. ...+++.++|
T Consensus        30 ~~~~~~il~~vs~~i~~Ge----~~~i~G~NGsGKS-------TLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~   98 (236)
T cd03267          30 KYREVEALKGISFTIEKGE----IVGFIGPNGAGKT-------TTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGV   98 (236)
T ss_pred             ccCCeeeeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEECCEEccccchhhcccEEE
Confidence            3455689999999999999    7889999999999       99999999999999999999986543 2345678999


Q ss_pred             ec-CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           88 CP-QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        88 v~-Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      +| |.+.+++.+|+.|++.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++++||
T Consensus        99 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  178 (236)
T cd03267          99 VFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD  178 (236)
T ss_pred             EcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            98 55678889999999987654444333334456788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       179 EPt~~LD~~~~  189 (236)
T cd03267         179 EPTIGLDVVAQ  189 (236)
T ss_pred             CCCCCCCHHHH
Confidence            99999999764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=247.31  Aligned_cols=154  Identities=18%  Similarity=0.231  Sum_probs=133.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~   89 (178)
                      .++|+|+||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...   ...+++++|+|
T Consensus        16 ~~~l~~~sl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   84 (241)
T PRK10895         16 RRVVEDVSLTVNSGE----IVGLLGPNGAGKT-------TTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLP   84 (241)
T ss_pred             EEEEeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEec
Confidence            479999999999999    8889999999999       999999999999999999999887542   22456899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           90 QFNGINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      |++.+++.+|+.||+.++.... .....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|+||||
T Consensus        85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  164 (241)
T PRK10895         85 QEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEP  164 (241)
T ss_pred             cCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            9999999999999998754332 122233455788899999998888999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       165 t~~LD~~~~  173 (241)
T PRK10895        165 FAGVDPISV  173 (241)
T ss_pred             cccCCHHHH
Confidence            999998764

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-37  Score=251.48  Aligned_cols=154  Identities=16%  Similarity=0.114  Sum_probs=133.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++..  ...+++.++|+||
T Consensus        22 ~~il~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q   90 (271)
T PRK13632         22 NNALKNVSFEINEGE----YVAILGHNGSGKS-------TISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQ   90 (271)
T ss_pred             ccceeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEe
Confidence            469999999999999    7889999999999       99999999999999999999988754  3456778999999


Q ss_pred             CCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           91 FNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        91 ~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      ++. .++.+|+.||+.+.....+....+..+++.++++.+++.+..++.+.+||||||||++|||||+.+|++|+|||||
T Consensus        91 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~  170 (271)
T PRK13632         91 NPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST  170 (271)
T ss_pred             CHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            974 6778999999987544333333334456888999999998899999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       171 ~gLD~~~~  178 (271)
T PRK13632        171 SMLDPKGK  178 (271)
T ss_pred             ccCCHHHH
Confidence            99999754

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-37  Score=256.97  Aligned_cols=154  Identities=16%  Similarity=0.145  Sum_probs=133.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      ..+|+||||+|..||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++...     ..+++.|+|
T Consensus        28 ~~~l~~vsl~i~~Ge----~~~IvG~sGsGKS-------TLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~   96 (327)
T PRK11308         28 VKALDGVSFTLERGK----TLAVVGESGCGKS-------TLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQI   96 (327)
T ss_pred             eeEEeeeEEEECCCC----EEEEECCCCCcHH-------HHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEE
Confidence            579999999999999    7889999999999       999999999999999999999887542     345678999


Q ss_pred             ecCCC--CCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           88 CPQFN--GINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        88 v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      |||++  .+++.+|+.+++....... .....+.++++.++++.++|. ...++++++|||||||||+|||||+.+|++|
T Consensus        97 v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lL  176 (327)
T PRK11308         97 VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVV  176 (327)
T ss_pred             EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEE
Confidence            99997  5888999999987654332 333334456789999999996 5779999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      |+||||++||+.++
T Consensus       177 ilDEPts~LD~~~~  190 (327)
T PRK11308        177 VADEPVSALDVSVQ  190 (327)
T ss_pred             EEECCCccCCHHHH
Confidence            99999999998754

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-37  Score=252.56  Aligned_cols=154  Identities=16%  Similarity=0.099  Sum_probs=133.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~   89 (178)
                      .++|++|||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++..   ..+.++.++|+|
T Consensus        23 ~~vl~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~   91 (280)
T PRK13633         23 KLALDDVNLEVKKGE----FLVILGRNGSGKS-------TIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVF   91 (280)
T ss_pred             cceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEe
Confidence            469999999999999    8889999999999       99999999999999999999988754   245677899999


Q ss_pred             CCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           90 QFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        90 Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      |++. .+...|+.+++.+.....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||||
T Consensus        92 q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  171 (280)
T PRK13633         92 QNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEP  171 (280)
T ss_pred             cChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            9974 233568999998765444444344456788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       172 t~gLD~~~~  180 (280)
T PRK13633        172 TAMLDPSGR  180 (280)
T ss_pred             cccCCHHHH
Confidence            999999764

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=2.9e-37  Score=246.09  Aligned_cols=154  Identities=20%  Similarity=0.163  Sum_probs=132.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~   89 (178)
                      .++|++|||+|.+||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|.++...  .+ .+++++|+|
T Consensus        15 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   83 (242)
T TIGR03411        15 FKALNDLSLYVDPGE----LRVIIGPNGAGKT-------TMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKF   83 (242)
T ss_pred             eEEeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEec
Confidence            479999999999999    7779999999999       999999999999999999999876542  22 345799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcC--------CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRG--------IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~--------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      |++.+++.+|+.||+.++.....        ....+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|+
T Consensus        84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~  163 (242)
T TIGR03411        84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPK  163 (242)
T ss_pred             cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999987543210        1112234568889999999988899999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|+|||||+|||+.++
T Consensus       164 ~lllDEPt~~LD~~~~  179 (242)
T TIGR03411       164 LLLLDEPVAGMTDEET  179 (242)
T ss_pred             EEEecCCccCCCHHHH
Confidence            9999999999999764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-37  Score=251.16  Aligned_cols=153  Identities=16%  Similarity=0.092  Sum_probs=132.4

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      .+|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ..++++.++|+||+
T Consensus        18 ~~l~~vsl~i~~Ge----~~~i~G~NGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~   86 (277)
T PRK13652         18 EALNNINFIAPRNS----RIAVIGPNGAGKS-------TLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQN   86 (277)
T ss_pred             ceeeEeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecC
Confidence            59999999999999    7889999999999       99999999999999999999987753  34566789999999


Q ss_pred             CC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           92 NG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        92 ~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      +. .++..|+.||+.+.....+....+..+++.++++.+++.+..++.+.+||||||||++|||||+.+|++|||||||+
T Consensus        87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~  166 (277)
T PRK13652         87 PDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA  166 (277)
T ss_pred             cccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            74 34468999999875443333333344568899999999988999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       167 gLD~~~~  173 (277)
T PRK13652        167 GLDPQGV  173 (277)
T ss_pred             cCCHHHH
Confidence            9999764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-37  Score=250.97  Aligned_cols=153  Identities=14%  Similarity=0.089  Sum_probs=130.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig   86 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++..      ...+++.|+
T Consensus        20 ~~~l~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~   88 (280)
T PRK13649         20 GRALFDVNLTIEDGS----YTAFIGHTGSGKS-------TIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVG   88 (280)
T ss_pred             cceeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheE
Confidence            369999999999999    7889999999999       99999999999999999999987643      235667899


Q ss_pred             EecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           87 YCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        87 ~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      |+||++  .++ ..|++||+.+.....+....+..+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|
T Consensus        89 ~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll  167 (280)
T PRK13649         89 LVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKIL  167 (280)
T ss_pred             EEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999997  344 469999998765443333333445678899999997 5679999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       168 lLDEPt~~LD~~~~  181 (280)
T PRK13649        168 VLDEPTAGLDPKGR  181 (280)
T ss_pred             EEeCCcccCCHHHH
Confidence            99999999999764

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=3.6e-37  Score=241.53  Aligned_cols=153  Identities=22%  Similarity=0.213  Sum_probs=129.7

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhc
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYL   82 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~   82 (178)
                      .+|...+  ||||+|.+ |    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..      ....+
T Consensus         9 ~~~~~~~--~vsl~i~~-e----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   74 (214)
T cd03297           9 RLPDFTL--KIDFDLNE-E----VTGIFGASGAGKS-------TLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ   74 (214)
T ss_pred             ecCCeee--CceEEEcc-e----eEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence            3344344  99999999 9    7779999999999       99999999999999999999987642      22356


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      +.++|+||++.+++.+|+.+|+.+.....  .....++++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus        75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  152 (214)
T cd03297          75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL  152 (214)
T ss_pred             hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            78999999999999999999998754321  1122345688899999999888999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      ++|||||+|||+.++
T Consensus       153 lllDEPt~~LD~~~~  167 (214)
T cd03297         153 LLLDEPFSALDRALR  167 (214)
T ss_pred             EEEcCCcccCCHHHH
Confidence            999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-37  Score=247.23  Aligned_cols=154  Identities=16%  Similarity=0.157  Sum_probs=132.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|++|+    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ...+++.++|+||
T Consensus        15 ~~il~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   83 (258)
T PRK13548         15 RTLLDDVSLTLRPGE----VVAILGPNGAGKS-------TLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQ   83 (258)
T ss_pred             eeeeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEcc
Confidence            469999999999999    7889999999999       99999999999999999999987653  2345568999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh------CCCCeEE
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI------GDRDDGF  164 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~------~~P~~ll  164 (178)
                      ++.+++.+|++||+.+..........+..+++.++++.+++.+..++.+.+|||||||||+|||||+      .+|++++
T Consensus        84 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lll  163 (258)
T PRK13548         84 HSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL  163 (258)
T ss_pred             CCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence            9988888999999987543222222233456888999999998889999999999999999999999      5999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+|||+.++
T Consensus       164 LDEPt~~LD~~~~  176 (258)
T PRK13548        164 LDEPTSALDLAHQ  176 (258)
T ss_pred             EeCCcccCCHHHH
Confidence            9999999999764

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.6e-37  Score=246.52  Aligned_cols=154  Identities=19%  Similarity=0.198  Sum_probs=133.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--------------
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--------------   78 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--------------   78 (178)
                      .++++||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...              
T Consensus        13 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~   81 (252)
T TIGR03005        13 LTVLDGLNFSVAAGE----KVALIGPSGSGKS-------TILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKH   81 (252)
T ss_pred             eeEEeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEccccccccccccccchhH
Confidence            479999999999999    7889999999999       999999999999999999999876421              


Q ss_pred             -HhhccceEEecCCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH
Q psy860           79 -FQYLSGIGYCPQFNGINEHLTAQEMLECFSA-LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL  156 (178)
Q Consensus        79 -~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL  156 (178)
                       ..+++.++|+||++.+++..|+.||+.+... ..+....+..+.+.++++.+++.+..++.+.+|||||||||+|||||
T Consensus        82 ~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral  161 (252)
T TIGR03005        82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARAL  161 (252)
T ss_pred             HHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHH
Confidence             2456789999999999999999999987432 22232233445688899999999888999999999999999999999


Q ss_pred             hCCCCeEEeeCCCCCCCCCCC
Q psy860          157 IGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       157 ~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +.+|+++||||||+|||+.++
T Consensus       162 ~~~p~llllDEP~~~LD~~~~  182 (252)
T TIGR03005       162 AMRPKVMLFDEVTSALDPELV  182 (252)
T ss_pred             HcCCCEEEEeCCcccCCHHHH
Confidence            999999999999999999764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=6.2e-37  Score=238.41  Aligned_cols=148  Identities=22%  Similarity=0.219  Sum_probs=131.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q~   91 (178)
                      .+++++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++... ...+++++|+||+
T Consensus        13 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~   81 (201)
T cd03231          13 RALFSGLSFTLAAGE----ALQVTGPNGSGKT-------TLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHA   81 (201)
T ss_pred             ceeeccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccc
Confidence            468999999999999    8889999999999       999999999999999999999876432 3456789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++.+|++||+.++...      ...+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|
T Consensus        82 ~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~  155 (201)
T cd03231          82 PGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTA  155 (201)
T ss_pred             cccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence            9998899999999875311      1345688899999999888999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       156 LD~~~~  161 (201)
T cd03231         156 LDKAGV  161 (201)
T ss_pred             CCHHHH
Confidence            999764

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=6.8e-37  Score=246.29  Aligned_cols=154  Identities=15%  Similarity=0.111  Sum_probs=132.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---------------
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---------------   77 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---------------   77 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+++++|.++..               
T Consensus        18 ~~~l~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   86 (257)
T PRK10619         18 HEVLKGVSLQANAGD----VISIIGSSGSGKS-------TFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQ   86 (257)
T ss_pred             EEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchH
Confidence            469999999999999    7889999999999       99999999999999999999987642               


Q ss_pred             HHhhccceEEecCCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHH
Q psy860           78 LFQYLSGIGYCPQFNGINEHLTAQEMLECFSA-LRGIPGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMA  155 (178)
Q Consensus        78 ~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAra  155 (178)
                      ...++++++|+||++.+++.+|++||+.+... .......+.++++.++++.+++.+. .++++.+|||||||||+||||
T Consensus        87 ~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~lara  166 (257)
T PRK10619         87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARA  166 (257)
T ss_pred             HHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence            23456789999999999999999999986432 2222223345678889999999876 488999999999999999999


Q ss_pred             HhCCCCeEEeeCCCCCCCCCCC
Q psy860          156 LIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       156 L~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |+.+|++++|||||+|||+.++
T Consensus       167 l~~~p~llllDEPt~~LD~~~~  188 (257)
T PRK10619        167 LAMEPEVLLFDEPTSALDPELV  188 (257)
T ss_pred             HhcCCCEEEEeCCcccCCHHHH
Confidence            9999999999999999999764

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-37  Score=247.21  Aligned_cols=145  Identities=15%  Similarity=0.084  Sum_probs=128.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.   .+++.++|+||++
T Consensus        25 ~~il~~isl~i~~Ge----~~~I~G~NGsGKS-------TLlk~l~Gl~~p~~G~i~~~g~~~~---~~~~~i~~v~q~~   90 (257)
T PRK11247         25 RTVLNQLDLHIPAGQ----FVAVVGRSGCGKS-------TLLRLLAGLETPSAGELLAGTAPLA---EAREDTRLMFQDA   90 (257)
T ss_pred             cceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEHH---HhhCceEEEecCc
Confidence            479999999999999    7889999999999       9999999999999999998886543   4567899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|++||+.+...      ....+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+||
T Consensus        91 ~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L  164 (257)
T PRK11247         91 RLLPWKKVIDNVGLGLK------GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL  164 (257)
T ss_pred             cCCCCCcHHHHHHhccc------chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence            99988999999986421      122456888999999998889999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       165 D~~~~  169 (257)
T PRK11247        165 DALTR  169 (257)
T ss_pred             CHHHH
Confidence            98764

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-37  Score=248.60  Aligned_cols=154  Identities=15%  Similarity=0.089  Sum_probs=130.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v   88 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++..    ...+++.++|+
T Consensus        14 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v   82 (271)
T PRK13638         14 EPVLKGLNLDFSLSP----VTGLVGANGCGKS-------TLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATV   82 (271)
T ss_pred             cccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEE
Confidence            469999999999999    8889999999999       99999999999999999999988731    23456789999


Q ss_pred             cCCCCC-CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           89 PQFNGI-NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        89 ~Q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      ||++.. ++..++.+|+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus        83 ~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE  162 (271)
T PRK13638         83 FQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE  162 (271)
T ss_pred             eeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            999753 3456899998875444333333334567889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       163 Pt~~LD~~~~  172 (271)
T PRK13638        163 PTAGLDPAGR  172 (271)
T ss_pred             CcccCCHHHH
Confidence            9999998764

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-37  Score=255.72  Aligned_cols=162  Identities=10%  Similarity=0.026  Sum_probs=132.7

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC----cccccccccccccccH--
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP----FQAAQNSLLMTNIMHL--   78 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~----~~~g~i~~~g~~~~~~--   78 (178)
                      .|...-+..++|+||||+|.+||    +.+|+|+||||||       ||++.++|+.+    +++|+|.++|+++...  
T Consensus        12 ~~~~~~~~~~~l~~vsl~i~~Ge----~~~lvG~sGsGKS-------TL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~   80 (326)
T PRK11022         12 HFGDESAPFRAVDRISYSVKQGE----VVGIVGESGSGKS-------VSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE   80 (326)
T ss_pred             EECCCCccEEEEeeeEEEECCCC----EEEEECCCCChHH-------HHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence            34333333579999999999999    7889999999999       99999999986    4899999999987542  


Q ss_pred             ---Hhh-ccceEEecCCC--CCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHHH
Q psy860           79 ---FQY-LSGIGYCPQFN--GINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNKR  148 (178)
Q Consensus        79 ---~~~-~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqkQ  148 (178)
                         .+. ++.|+|+||++  .+++.+|+.+++....... +....+.++++.++++.++|.+   ..++++++|||||||
T Consensus        81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q  160 (326)
T PRK11022         81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ  160 (326)
T ss_pred             HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence               222 24799999997  4888999998876654332 3333445667899999999963   568999999999999


Q ss_pred             HHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          149 KLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       149 Rv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ||+|||||+.+|++||+||||+|||+.++
T Consensus       161 Rv~iArAL~~~P~llilDEPts~LD~~~~  189 (326)
T PRK11022        161 RVMIAMAIACRPKLLIADEPTTALDVTIQ  189 (326)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence            99999999999999999999999998754

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=7.3e-37  Score=242.42  Aligned_cols=152  Identities=18%  Similarity=0.077  Sum_probs=129.0

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc----ccccccccccccccHHhhccceEEecC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF----QAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~----~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      +++||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|    ++|++.++|+++......++.++|++|
T Consensus         1 ~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   69 (230)
T TIGR02770         1 LVQDLNLSLKRGE----VLALVGESGSGKS-------LTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQ   69 (230)
T ss_pred             CccceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEec
Confidence            5899999999999    8889999999999       999999999998    899999999887654323357999999


Q ss_pred             CCC--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC---ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           91 FNG--INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT---EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        91 ~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~---~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      ++.  +++.+|+.+++.+.....+....+.++++.++++.+++.   +..++.+.+|||||||||+|||||+.+|++++|
T Consensus        70 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL  149 (230)
T TIGR02770        70 NPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA  149 (230)
T ss_pred             CchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            985  556789999987654333322233455688999999997   567899999999999999999999999999999


Q ss_pred             eCCCCCCCCCCC
Q psy860          166 KLPFSSQNLYNT  177 (178)
Q Consensus       166 DEPt~gLD~~~~  177 (178)
                      ||||+|||+.++
T Consensus       150 DEPt~~LD~~~~  161 (230)
T TIGR02770       150 DEPTTDLDVVNQ  161 (230)
T ss_pred             cCCccccCHHHH
Confidence            999999998754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-37  Score=249.26  Aligned_cols=154  Identities=16%  Similarity=0.100  Sum_probs=131.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v   88 (178)
                      .+++++|||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++..    ...+++.|+|+
T Consensus        15 ~~~l~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v   83 (275)
T PRK13639         15 TEALKGINFKAEKGE----MVALLGPNGAGKS-------TLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIV   83 (275)
T ss_pred             CeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEE
Confidence            369999999999999    7889999999999       99999999999999999999988742    23456789999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      ||++. .+...|+.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++++|||
T Consensus        84 ~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE  163 (275)
T PRK13639         84 FQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE  163 (275)
T ss_pred             eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99973 34457999999865433333333344678889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       164 Pt~gLD~~~~  173 (275)
T PRK13639        164 PTSGLDPMGA  173 (275)
T ss_pred             CCcCCCHHHH
Confidence            9999999764

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=6.6e-37  Score=242.84  Aligned_cols=148  Identities=22%  Similarity=0.208  Sum_probs=127.2

Q ss_pred             ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCC
Q psy860           16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGIN   95 (178)
Q Consensus        16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~   95 (178)
                      |+++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++....   ...+|+||++.++
T Consensus         1 l~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~---~~~~~v~q~~~l~   66 (230)
T TIGR01184         1 LKGVNLTIQQGE----FISLIGHSGCGKS-------TLLNLISGLAQPTSGGVILEGKQITEPG---PDRMVVFQNYSLL   66 (230)
T ss_pred             CCceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCCCC---hhheEEecCcccC
Confidence            579999999999    7889999999999       9999999999999999999998775421   1358999999999


Q ss_pred             CCCCHHHHHHHHHHh--cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860           96 EHLTAQEMLECFSAL--RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN  173 (178)
Q Consensus        96 ~~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD  173 (178)
                      +.+|+.||+.++...  ......+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|||
T Consensus        67 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD  146 (230)
T TIGR01184        67 PWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD  146 (230)
T ss_pred             CCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence            999999999875321  122222334567889999999988899999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy860          174 LYNT  177 (178)
Q Consensus       174 ~~~~  177 (178)
                      +.++
T Consensus       147 ~~~~  150 (230)
T TIGR01184       147 ALTR  150 (230)
T ss_pred             HHHH
Confidence            9764

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-37  Score=257.18  Aligned_cols=143  Identities=23%  Similarity=0.235  Sum_probs=128.0

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceEEecCC
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIGYCPQF   91 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig~v~Q~   91 (178)
                      ||||+|+.||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|+++..      ....++.++|+||+
T Consensus        16 ~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~   84 (352)
T PRK11144         16 TVNLTLPAQG----ITAIFGRSGAGKT-------SLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD   84 (352)
T ss_pred             EEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCC
Confidence            8999999999    8889999999999       99999999999999999999987653      23346789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++++|++||+.+...      ....+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+|
T Consensus        85 ~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~  158 (352)
T PRK11144         85 ARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS  158 (352)
T ss_pred             cccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence            999999999999987432      12345788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       159 LD~~~~  164 (352)
T PRK11144        159 LDLPRK  164 (352)
T ss_pred             CCHHHH
Confidence            999754

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=6.8e-37  Score=243.42  Aligned_cols=152  Identities=18%  Similarity=0.217  Sum_probs=133.6

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI   94 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l   94 (178)
                      +|++|||+|.+||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++......++.++|+||++.+
T Consensus        14 ~l~~is~~i~~Ge----~~~i~G~nG~GKS-------tLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~   82 (235)
T cd03299          14 KLKNVSLEVERGD----YFVILGPTGSGKS-------VLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYAL   82 (235)
T ss_pred             eeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCcc
Confidence            7999999999999    7889999999999       9999999999999999999998876533345689999999999


Q ss_pred             CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860           95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus        95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                      ++.+|+.||+.+.....+....+..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+|||+
T Consensus        83 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~  162 (235)
T cd03299          83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV  162 (235)
T ss_pred             CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCH
Confidence            99999999998754443333333455678899999999889999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy860          175 YNT  177 (178)
Q Consensus       175 ~~~  177 (178)
                      .++
T Consensus       163 ~~~  165 (235)
T cd03299         163 RTK  165 (235)
T ss_pred             HHH
Confidence            764

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=243.68  Aligned_cols=154  Identities=18%  Similarity=0.160  Sum_probs=130.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc--HHhhccce
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH--LFQYLSGI   85 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~--~~~~~~~i   85 (178)
                      .+++++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+     |++|+|.++|.++..  ..++++++
T Consensus        16 ~~~l~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i   84 (250)
T PRK14247         16 VEVLDGVNLEIPDNT----ITALMGPSGSGKS-------TLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRV   84 (250)
T ss_pred             eeeeecceeEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccE
Confidence            469999999999999    8889999999999       99999999986     479999999988754  34566789


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHhcCC--CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           86 GYCPQFNGINEHLTAQEMLECFSALRGI--PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      +|+||++.+++.+|+.||+.+.......  ...+..+.+.++++.+++.    +..++.+.+|||||||||+|||||+.+
T Consensus        85 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~  164 (250)
T PRK14247         85 QMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQ  164 (250)
T ss_pred             EEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            9999999888999999999875433221  1123345678899999985    356889999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++++|||||+|||+.++
T Consensus       165 p~lllLDEP~~~LD~~~~  182 (250)
T PRK14247        165 PEVLLADEPTANLDPENT  182 (250)
T ss_pred             CCEEEEcCCCccCCHHHH
Confidence            999999999999999764

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.2e-36  Score=237.75  Aligned_cols=149  Identities=24%  Similarity=0.226  Sum_probs=130.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      ..+++++||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++... ..++.++|++|.+
T Consensus        15 ~~~l~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~~~~~~~   82 (207)
T PRK13539         15 RVLFSGLSFTLAAGE----ALVLTGPNGSGKT-------TLLRLIAGLLPPAAGTIKLDGGDIDDP-DVAEACHYLGHRN   82 (207)
T ss_pred             eEEEeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEeCcch-hhHhhcEEecCCC
Confidence            468999999999999    7889999999999       999999999999999999999876432 2667899999988


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|+.+|+.+.....+    ...+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+||
T Consensus        83 ~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L  158 (207)
T PRK13539         83 AMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL  158 (207)
T ss_pred             cCCCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            88889999999987554332    12345889999999988889999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       159 D~~~~  163 (207)
T PRK13539        159 DAAAV  163 (207)
T ss_pred             CHHHH
Confidence            98764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1e-36  Score=246.41  Aligned_cols=154  Identities=15%  Similarity=0.172  Sum_probs=131.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      ..+|+||||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+++++|.++...     ..+++.++|
T Consensus        24 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~   92 (265)
T TIGR02769        24 APVLTNVSLSIEEGE----TVGLLGRSGCGKS-------TLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQL   92 (265)
T ss_pred             eEEeeCceeEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEE
Confidence            479999999999999    8889999999999       999999999999999999999887542     234678999


Q ss_pred             ecCCC--CCCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           88 CPQFN--GINEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        88 v~Q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      +||++  .+++.+|+.||+.+.... ......+..+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|
T Consensus        93 v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~il  172 (265)
T TIGR02769        93 VFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLI  172 (265)
T ss_pred             EecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            99997  466789999999765432 2233233456788999999996 6789999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       173 lLDEPt~~LD~~~~  186 (265)
T TIGR02769       173 VLDEAVSNLDMVLQ  186 (265)
T ss_pred             EEeCCcccCCHHHH
Confidence            99999999999753

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1.6e-36  Score=239.87  Aligned_cols=154  Identities=20%  Similarity=0.180  Sum_probs=131.8

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC---cccccccccccccccHHhhccceEEe
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP---FQAAQNSLLMTNIMHLFQYLSGIGYC   88 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~---~~~g~i~~~g~~~~~~~~~~~~ig~v   88 (178)
                      ..++++|+||+|++||    +.+|+|+||+|||       ||++.+.|+.+   |++|++.++|.++.. ..++++++|+
T Consensus        19 ~~~~l~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLlk~l~G~~~~~~~~~G~i~~~g~~~~~-~~~~~~i~~~   86 (226)
T cd03234          19 YARILNDVSLHVESGQ----VMAILGSSGSGKT-------TLLDAISGRVEGGGTTSGQILFNGQPRKP-DQFQKCVAYV   86 (226)
T ss_pred             ccccccCceEEEcCCe----EEEEECCCCCCHH-------HHHHHHhCccCCCCCCceEEEECCEECCh-HHhcccEEEe
Confidence            3579999999999999    7889999999999       99999999998   999999999987753 3567789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcCCC---CCChhHHHHH-HHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           89 PQFNGINEHLTAQEMLECFSALRGIP---GVKSGPIIDY-WIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~-~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      ||++.+++.+|+.||+.+........   .....+++.+ .++.+++.+..++.+.+|||||||||+|||||+.+|++++
T Consensus        87 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ill  166 (226)
T cd03234          87 RQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLI  166 (226)
T ss_pred             CCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEE
Confidence            99999999999999998765433211   1112234555 8999999888899999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+|||+.++
T Consensus       167 lDEP~~gLD~~~~  179 (226)
T cd03234         167 LDEPTSGLDSFTA  179 (226)
T ss_pred             EeCCCcCCCHHHH
Confidence            9999999999764

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-36  Score=244.42  Aligned_cols=154  Identities=19%  Similarity=0.162  Sum_probs=131.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~   89 (178)
                      .++|++|||++++||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|.++...  .. .+.+++|+|
T Consensus        18 ~~~l~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   86 (255)
T PRK11300         18 LLAVNNVNLEVREQE----IVSLIGPNGAGKT-------TVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTF   86 (255)
T ss_pred             EEEEEeeeeEEcCCe----EEEEECCCCCCHH-------HHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEec
Confidence            579999999999999    8889999999999       999999999999999999999877542  22 345699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHh----------cCC---CC--CChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHH
Q psy860           90 QFNGINEHLTAQEMLECFSAL----------RGI---PG--VKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAM  154 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~----------~~~---~~--~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAr  154 (178)
                      |++.+++.+|+.||+.+....          ...   ..  .+..+.+.++++.+++.+..++++.+|||||||||+|||
T Consensus        87 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~  166 (255)
T PRK11300         87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIAR  166 (255)
T ss_pred             cCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHH
Confidence            999999999999999874321          000   00  122346778899999998899999999999999999999


Q ss_pred             HHhCCCCeEEeeCCCCCCCCCCC
Q psy860          155 ALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       155 aL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ||+.+|++|||||||+|||+.++
T Consensus       167 al~~~p~llllDEPt~~LD~~~~  189 (255)
T PRK11300        167 CMVTQPEILMLDEPAAGLNPKET  189 (255)
T ss_pred             HHhcCCCEEEEcCCccCCCHHHH
Confidence            99999999999999999999764

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.7e-37  Score=249.67  Aligned_cols=153  Identities=14%  Similarity=0.094  Sum_probs=133.4

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc---cccccccccccc--HHhhccceEEe
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA---AQNSLLMTNIMH--LFQYLSGIGYC   88 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~---g~i~~~g~~~~~--~~~~~~~ig~v   88 (178)
                      +++++|||+|.+||    +.+|+|+||+|||       ||++++.|+.+|++   |++.++|.++..  ....++++||+
T Consensus        21 ~~l~~v~l~i~~Ge----~~~I~G~nGaGKS-------TLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v   89 (282)
T PRK13640         21 PALNDISFSIPRGS----WTALIGHNGSGKS-------TISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIV   89 (282)
T ss_pred             cceeeEEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEE
Confidence            59999999999999    8889999999999       99999999999987   899999998754  34556789999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      ||++. +++..|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus        90 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDE  169 (282)
T PRK13640         90 FQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE  169 (282)
T ss_pred             EECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            99984 67789999999875444443333445678899999999998999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       170 Pt~gLD~~~~  179 (282)
T PRK13640        170 STSMLDPAGK  179 (282)
T ss_pred             CcccCCHHHH
Confidence            9999998764

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.9e-37  Score=243.04  Aligned_cols=154  Identities=18%  Similarity=0.229  Sum_probs=134.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||++.+||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++......++.++|+||++
T Consensus        13 ~~il~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~   81 (237)
T TIGR00968        13 FQALDDVNLEVPTGS----LVALLGPSGSGKS-------TLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHY   81 (237)
T ss_pred             eeeeeeEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecCh
Confidence            469999999999999    7789999999999       99999999999999999999988765434467899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++..|+.||+.+.....+.......+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|++++|||||+||
T Consensus        82 ~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~L  161 (237)
T TIGR00968        82 ALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGAL  161 (237)
T ss_pred             hhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            99999999999987544433322233456788999999998899999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       162 D~~~~  166 (237)
T TIGR00968       162 DAKVR  166 (237)
T ss_pred             CHHHH
Confidence            98764

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=244.70  Aligned_cols=153  Identities=13%  Similarity=0.128  Sum_probs=129.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||+|.+||    +.+|+|+||+|||       ||++++.|+.+|     ++|+|.++|.++..    ...+++
T Consensus        25 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   93 (258)
T PRK14268         25 KQALKNVSMQIPKNS----VTALIGPSGCGKS-------TFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRK   93 (258)
T ss_pred             eeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhh
Confidence            469999999999999    8889999999999       999999999874     89999999987643    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      .++|+||++.+++ .|++||+.+.....+....+..+++.++++.+++.    +..++++.+|||||||||+|||||+.+
T Consensus        94 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~  172 (258)
T PRK14268         94 NVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVK  172 (258)
T ss_pred             hEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            8999999998887 89999998765443332223345678899999883    456889999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |+++||||||+|||+.++
T Consensus       173 p~llllDEPt~~LD~~~~  190 (258)
T PRK14268        173 PKIILFDEPTSALDPIST  190 (258)
T ss_pred             CCEEEEeCCCcccCHHHH
Confidence            999999999999999764

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-36  Score=255.36  Aligned_cols=147  Identities=19%  Similarity=0.183  Sum_probs=129.3

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------HhhccceEEecCC
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQYLSGIGYCPQF   91 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~~~~ig~v~Q~   91 (178)
                      +|||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|+++...      ...++.++|+||+
T Consensus        15 ~isl~i~~Ge----i~~l~G~nGsGKS-------TLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~   83 (354)
T TIGR02142        15 DADFTLPGQG----VTAIFGRSGSGKT-------TLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE   83 (354)
T ss_pred             EEEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecC
Confidence            8999999999    7889999999999       999999999999999999999887432      2346789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++++|++||+.+.....  ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus        84 ~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~  161 (354)
T TIGR02142        84 ARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAA  161 (354)
T ss_pred             CccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            99999999999998754321  1223345688999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       162 LD~~~~  167 (354)
T TIGR02142       162 LDDPRK  167 (354)
T ss_pred             CCHHHH
Confidence            999764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9e-37  Score=248.28  Aligned_cols=153  Identities=15%  Similarity=0.092  Sum_probs=133.3

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      ++|++|||+|.+||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|.++..  ..+++++++|+||+
T Consensus        21 ~~l~~v~l~i~~Ge----~~~I~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~   89 (277)
T PRK13642         21 NQLNGVSFSITKGE----WVSIIGQNGSGKS-------TTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQN   89 (277)
T ss_pred             eeeeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEEC
Confidence            58999999999999    8889999999999       99999999999999999999988754  34567789999999


Q ss_pred             CC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           92 NG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        92 ~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      +. +++..|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+
T Consensus        90 ~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~  169 (277)
T PRK13642         90 PDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTS  169 (277)
T ss_pred             HHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            74 67788999999875443333333334567889999999988999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       170 ~LD~~~~  176 (277)
T PRK13642        170 MLDPTGR  176 (277)
T ss_pred             cCCHHHH
Confidence            9999764

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=243.55  Aligned_cols=154  Identities=18%  Similarity=0.193  Sum_probs=130.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----ccccccccccccc----cHHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIM----HLFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~----~~~~~~~   83 (178)
                      .++|+||||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|     ++|+|+++|.++.    ...++++
T Consensus        17 ~~~l~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   85 (253)
T PRK14267         17 NHVIKGVDLKIPQNG----VFALMGPSGCGKS-------TLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRR   85 (253)
T ss_pred             eeeeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhh
Confidence            479999999999999    7889999999999       999999999887     4999999998875    1235567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCC--CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHh
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGI--PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      +++|+||++.+++.+|+.||+.+.......  +..+..+++.++++.+++.    +..++++.+|||||||||+|||||+
T Consensus        86 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  165 (253)
T PRK14267         86 EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA  165 (253)
T ss_pred             ceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh
Confidence            899999999999999999999875433322  1222345678889999984    3568899999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|++++|||||+|||+.++
T Consensus       166 ~~p~llllDEP~~~LD~~~~  185 (253)
T PRK14267        166 MKPKILLMDEPTANIDPVGT  185 (253)
T ss_pred             cCCCEEEEcCCCccCCHHHH
Confidence            99999999999999999754

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=1.3e-36  Score=241.33  Aligned_cols=154  Identities=21%  Similarity=0.234  Sum_probs=134.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++++++||+|++||    ..+|+|+||+|||       ||++++.|+.+|++|++.++|.++......++.++|+||++
T Consensus        13 ~~il~~i~~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~   81 (232)
T cd03300          13 FVALDGVSLDIKEGE----FFTLLGPSGCGKT-------TLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNY   81 (232)
T ss_pred             eeeeccceEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEeccc
Confidence            469999999999999    7789999999999       99999999999999999999988765433467899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|+.+|+.+.....+.......+.+.++++.+++.+..++.+.+||+||||||+|||||+.+|++++|||||+||
T Consensus        82 ~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gL  161 (232)
T cd03300          82 ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL  161 (232)
T ss_pred             ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            99889999999987554433333334556788999999998899999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       162 D~~~~  166 (232)
T cd03300         162 DLKLR  166 (232)
T ss_pred             CHHHH
Confidence            98764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.8e-36  Score=235.50  Aligned_cols=149  Identities=19%  Similarity=0.158  Sum_probs=131.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~   91 (178)
                      .++|+++||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|+++++|.++.. ...+++.++|+||+
T Consensus        14 ~~il~~~s~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~   82 (200)
T PRK13540         14 QPLLQQISFHLPAGG----LLHLKGSNGAGKT-------TLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHR   82 (200)
T ss_pred             eeEEeeeeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccc
Confidence            469999999999999    8889999999999       99999999999999999999988753 34566789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++.+|+.+|+.+.....     .....+.++++.+++.+..++++.+||+||||||+||||++.+|++++|||||+|
T Consensus        83 ~~~~~~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~  157 (200)
T PRK13540         83 SGINPYLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA  157 (200)
T ss_pred             cccCcCCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            98889999999998753221     1234688899999998888899999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       158 LD~~~~  163 (200)
T PRK13540        158 LDELSL  163 (200)
T ss_pred             cCHHHH
Confidence            998754

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-36  Score=243.92  Aligned_cols=154  Identities=19%  Similarity=0.168  Sum_probs=132.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||++++||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|.++..  ..++++.++|+||
T Consensus        15 ~~il~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   83 (255)
T PRK11231         15 KRILNDLSLSLPTGK----ITALIGPNGCGKS-------TLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQ   83 (255)
T ss_pred             EEEEeeeeeEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecc
Confidence            469999999999999    7889999999999       99999999999999999999987653  3345667999999


Q ss_pred             CCCCCCCCCHHHHHHHHHH----hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           91 FNGINEHLTAQEMLECFSA----LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      ++.+++.+|+.||+.+...    ..+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||
T Consensus        84 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  163 (255)
T PRK11231         84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD  163 (255)
T ss_pred             cCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            9988888999999986421    111112233456888999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       164 EP~~~LD~~~~  174 (255)
T PRK11231        164 EPTTYLDINHQ  174 (255)
T ss_pred             CCcccCCHHHH
Confidence            99999999764

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-36  Score=243.66  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=130.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|     ++|+|.++|.++..    ...+++
T Consensus        17 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~   85 (258)
T PRK14241         17 FHAVEDVNLNIEPRS----VTAFIGPSGCGKS-------TVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRR   85 (258)
T ss_pred             EeeeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhc
Confidence            479999999999999    8889999999999       999999999864     79999999987632    335677


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++.+|+.||+.+.....+. ...+..+.+.++++.+++.    +..++.+.+|||||||||+|||||+.
T Consensus        86 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  165 (258)
T PRK14241         86 TIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV  165 (258)
T ss_pred             ceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence            899999999999999999999875543332 2223345678889999984    46788999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       166 ~p~llllDEPt~~LD~~~~  184 (258)
T PRK14241        166 EPDVLLMDEPCSALDPIST  184 (258)
T ss_pred             CCCEEEEcCCCccCCHHHH
Confidence            9999999999999998754

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=1.9e-36  Score=245.10  Aligned_cols=155  Identities=14%  Similarity=0.022  Sum_probs=131.0

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEec
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCP   89 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~   89 (178)
                      .+++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++..  ....++.++|+|
T Consensus        25 ~~~~l~~vsl~i~~Ge----~~~i~G~NGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~   93 (267)
T PRK15112         25 TVEAVKPLSFTLREGQ----TLAIIGENGSGKS-------TLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIF   93 (267)
T ss_pred             ccceeeeeeEEecCCC----EEEEEcCCCCCHH-------HHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEe
Confidence            3579999999999999    8889999999999       99999999999999999999987753  223346799999


Q ss_pred             CCCC--CCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           90 QFNG--INEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        90 Q~~~--l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      |++.  +++.+|+.+++.+..... .....+..+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||
T Consensus        94 q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL  173 (267)
T PRK15112         94 QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIA  173 (267)
T ss_pred             cCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEE
Confidence            9975  567889999988754432 222223345688899999995 677889999999999999999999999999999


Q ss_pred             eCCCCCCCCCCC
Q psy860          166 KLPFSSQNLYNT  177 (178)
Q Consensus       166 DEPt~gLD~~~~  177 (178)
                      ||||+|||+.++
T Consensus       174 DEPt~~LD~~~~  185 (267)
T PRK15112        174 DEALASLDMSMR  185 (267)
T ss_pred             cCCcccCCHHHH
Confidence            999999999764

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-36  Score=245.41  Aligned_cols=154  Identities=20%  Similarity=0.218  Sum_probs=131.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|.+||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|.++..  ..++++.++|+||
T Consensus        24 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   92 (265)
T PRK10575         24 RTLLHPLSLTFPAGK----VTGLIGHNGSGKS-------TLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ   92 (265)
T ss_pred             EEEEeeeeeEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEecc
Confidence            479999999999999    7889999999999       99999999999999999999987643  3355678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHh-cC---CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           91 FNGINEHLTAQEMLECFSAL-RG---IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~-~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      ++.+++.+|+.+|+.+.... ..   .......+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD  172 (265)
T PRK10575         93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD  172 (265)
T ss_pred             CCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            98888899999999764211 11   111223456888999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       173 EPt~~LD~~~~  183 (265)
T PRK10575        173 EPTSALDIAHQ  183 (265)
T ss_pred             CCcccCCHHHH
Confidence            99999999764

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-36  Score=242.63  Aligned_cols=153  Identities=18%  Similarity=0.171  Sum_probs=128.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|     ++|+|.++|.++..    ....++
T Consensus        20 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   88 (254)
T PRK14273         20 FKALNNINIKILKNS----ITALIGPSGCGKS-------TFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRR   88 (254)
T ss_pred             ceeecceeeEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhh
Confidence            469999999999999    8889999999999       999999999886     48999999987642    234577


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCC----CccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGL----TEYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L----~~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++|+||++.++ .+|++||+.+.....+. ...+..+++.++++.+++    .+..++++.+|||||||||+|||||+.
T Consensus        89 ~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~  167 (254)
T PRK14273         89 KIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI  167 (254)
T ss_pred             ceEEEeeccccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence            899999998877 48999999876443322 112234567888999987    356788999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++|||||||+|||+.++
T Consensus       168 ~p~lllLDEPt~~LD~~~~  186 (254)
T PRK14273        168 EPNVILMDEPTSALDPIST  186 (254)
T ss_pred             CCCEEEEeCCCcccCHHHH
Confidence            9999999999999999764

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=2.3e-36  Score=238.35  Aligned_cols=154  Identities=21%  Similarity=0.247  Sum_probs=129.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc--c--cccc--H---Hhh-c
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM--T--NIMH--L---FQY-L   82 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g--~--~~~~--~---~~~-~   82 (178)
                      .++|+||||+|.+||    +.+|+|+||+|||       ||++++.|+.+|++|+|.+++  .  ++..  .   .++ +
T Consensus        21 ~~il~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~   89 (224)
T TIGR02324        21 LPVLKNVSLTVNAGE----CVALSGPSGAGKS-------TLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRR   89 (224)
T ss_pred             eEEEecceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHh
Confidence            369999999999999    7889999999999       999999999999999999984  2  3322  1   122 3


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      ++++|+||++.+++.+|+.|++.+.....+....+..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus        90 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~  169 (224)
T TIGR02324        90 KTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYP  169 (224)
T ss_pred             cceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            579999999999999999999987543333332334567788999999975 4688999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +++|||||+|||+.++
T Consensus       170 llllDEPt~~LD~~~~  185 (224)
T TIGR02324       170 ILLLDEPTASLDAANR  185 (224)
T ss_pred             EEEEcCCcccCCHHHH
Confidence            9999999999999754

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-36  Score=241.00  Aligned_cols=150  Identities=16%  Similarity=0.113  Sum_probs=128.7

Q ss_pred             cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCC
Q psy860           17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINE   96 (178)
Q Consensus        17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~   96 (178)
                      .+|||+|..||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|+++......++.++|+||++.+++
T Consensus        16 ~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~   84 (232)
T PRK10771         16 MRFDLTVERGE----RVAILGPSGAGKS-------TLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFS   84 (232)
T ss_pred             ceeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEeccccccc
Confidence            48999999999    7889999999999       999999999999999999999987654333567999999999999


Q ss_pred             CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860           97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus        97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      .+|+.||+.+.............+++.++++.+++.+..++++.+|||||||||+||||++.+|+++||||||+|||+.+
T Consensus        85 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~  164 (232)
T PRK10771         85 HLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPAL  164 (232)
T ss_pred             CCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            99999999764221111112234568889999999988999999999999999999999999999999999999999976


Q ss_pred             C
Q psy860          177 T  177 (178)
Q Consensus       177 ~  177 (178)
                      +
T Consensus       165 ~  165 (232)
T PRK10771        165 R  165 (232)
T ss_pred             H
Confidence            4

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.2e-36  Score=235.83  Aligned_cols=150  Identities=18%  Similarity=0.245  Sum_probs=132.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++++++||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|+++... ..++.++|++|++
T Consensus        24 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~i~~~-~~~~~i~~~~q~~   91 (214)
T PRK13543         24 EPVFGPLDFHVDAGE----ALLVQGDNGAGKT-------TLLRVLAGLLHVESGQIQIDGKTATRG-DRSRFMAYLGHLP   91 (214)
T ss_pred             ceeeecceEEECCCC----EEEEEcCCCCCHH-------HHHHHHhCCCCCCCeeEEECCEEccch-hhhhceEEeecCc
Confidence            469999999999999    7889999999999       999999999999999999999887543 3345799999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|+.||+.+.....+   ....+.+.++++.+++.+..++++.+||+||||||+||||++.+|++++|||||++|
T Consensus        92 ~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L  168 (214)
T PRK13543         92 GLKADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL  168 (214)
T ss_pred             ccccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            88888999999987654332   223456788999999998889999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       169 D~~~~  173 (214)
T PRK13543        169 DLEGI  173 (214)
T ss_pred             CHHHH
Confidence            99764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-36  Score=245.16  Aligned_cols=153  Identities=10%  Similarity=0.011  Sum_probs=132.8

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      ++|+|+||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|+++|.++..  ..++++.++|+||+
T Consensus        23 ~~l~~isl~i~~Ge----~~~I~G~nGsGKS-------TLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~   91 (269)
T PRK13648         23 FTLKDVSFNIPKGQ----WTSIVGHNGSGKS-------TIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQN   91 (269)
T ss_pred             cceeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeC
Confidence            58999999999999    7889999999999       99999999999999999999988754  34567789999999


Q ss_pred             CC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           92 NG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        92 ~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      +. +++..|+.+|+.+.....+....+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||+
T Consensus        92 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~  171 (269)
T PRK13648         92 PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATS  171 (269)
T ss_pred             hHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            85 67788999998775443333223334567889999999988999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       172 ~LD~~~~  178 (269)
T PRK13648        172 MLDPDAR  178 (269)
T ss_pred             cCCHHHH
Confidence            9999764

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=2.1e-36  Score=239.47  Aligned_cols=151  Identities=25%  Similarity=0.253  Sum_probs=129.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~   89 (178)
                      .++|+||||++++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...  .+ .++.++|+|
T Consensus        13 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   81 (230)
T TIGR03410        13 SHILRGVSLEVPKGE----VTCVLGRNGVGKT-------TLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVP   81 (230)
T ss_pred             eEEecceeeEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEec
Confidence            479999999999999    7889999999999       999999999999999999999876532  22 356799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-CCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-LTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      |++.+++.+|+.+|+.+.......   ...+.+.++++.++ +.+..++++.+|||||||||+|||||+.+|++++||||
T Consensus        82 q~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP  158 (230)
T TIGR03410        82 QGREIFPRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP  158 (230)
T ss_pred             cCCcccCCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            999999999999999875433221   22345677888887 56778999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       159 t~~LD~~~~  167 (230)
T TIGR03410       159 TEGIQPSII  167 (230)
T ss_pred             cccCCHHHH
Confidence            999999764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=1.4e-36  Score=252.85  Aligned_cols=162  Identities=17%  Similarity=0.139  Sum_probs=133.9

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---cccccccccccccH---
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMHL---   78 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~~---   78 (178)
                      .|..+.|..++++||||+|.+||    +.+|+|+||+|||       ||++.++|+.+|+   +|+|.++|+++...   
T Consensus        21 ~~~~~~~~~~~l~~vsl~i~~Ge----~~~ivG~sGsGKS-------TL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~   89 (330)
T PRK09473         21 TFSTPDGDVTAVNDLNFSLRAGE----TLGIVGESGSGKS-------QTAFALMGLLAANGRIGGSATFNGREILNLPEK   89 (330)
T ss_pred             EEecCCCCEEEEeeeEEEEcCCC----EEEEECCCCchHH-------HHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence            34333344579999999999999    7889999999999       9999999999885   99999999987542   


Q ss_pred             --Hhhc-cceEEecCCC--CCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHHHH
Q psy860           79 --FQYL-SGIGYCPQFN--GINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNKRK  149 (178)
Q Consensus        79 --~~~~-~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqkQR  149 (178)
                        .++| +.|+||||++  .+++.+|+.+++....... +....+..+++.++++.+++.+   ..++++++|||||+||
T Consensus        90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR  169 (330)
T PRK09473         90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR  169 (330)
T ss_pred             HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence              2233 4799999998  6889999999887654333 2333344567889999999974   3478999999999999


Q ss_pred             HHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          150 LSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       150 v~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |+|||||+.+|++||+||||++||+.++
T Consensus       170 v~IArAL~~~P~llilDEPts~LD~~~~  197 (330)
T PRK09473        170 VMIAMALLCRPKLLIADEPTTALDVTVQ  197 (330)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence            9999999999999999999999998764

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-36  Score=247.68  Aligned_cols=153  Identities=15%  Similarity=0.108  Sum_probs=128.9

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc-------cHHhhccceE
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM-------HLFQYLSGIG   86 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~-------~~~~~~~~ig   86 (178)
                      ++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.       ....+++.++
T Consensus        25 ~il~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~   93 (289)
T PRK13645         25 KALNNTSLTFKKNK----VTCVIGTTGSGKS-------TMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIG   93 (289)
T ss_pred             ceeeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEE
Confidence            59999999999999    7889999999999       9999999999999999999998763       2345677899


Q ss_pred             EecCCCCC-CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           87 YCPQFNGI-NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        87 ~v~Q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      |+||++.. +...|+.||+.+.....+....+..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus        94 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl  173 (289)
T PRK13645         94 LVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLV  173 (289)
T ss_pred             EEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            99999742 23469999998754333332223345677899999995 68899999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+|||+.++
T Consensus       174 LDEPt~~LD~~~~  186 (289)
T PRK13645        174 LDEPTGGLDPKGE  186 (289)
T ss_pred             EeCCcccCCHHHH
Confidence            9999999999764

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=4.9e-36  Score=237.06  Aligned_cols=151  Identities=19%  Similarity=0.107  Sum_probs=130.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++++||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ..+++++++|+||
T Consensus        20 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   88 (225)
T PRK10247         20 AKILNNISFSLRAGE----FKLITGPSGCGKS-------TLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQ   88 (225)
T ss_pred             ceeeeccEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEec
Confidence            479999999999999    8889999999999       99999999999999999999987653  3345678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      ++.+++ .|++||+.+.......  ....+++.++++.+++. ...++++.+||+||||||+|||||+.+|++++|||||
T Consensus        89 ~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  165 (225)
T PRK10247         89 TPTLFG-DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT  165 (225)
T ss_pred             cccccc-ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            988876 5999999875433321  22345678899999996 5789999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       166 ~~LD~~~~  173 (225)
T PRK10247        166 SALDESNK  173 (225)
T ss_pred             ccCCHHHH
Confidence            99999764

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-36  Score=242.98  Aligned_cols=153  Identities=16%  Similarity=0.131  Sum_probs=129.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+     |++|++.++|.++..    ...+++
T Consensus        26 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~   94 (260)
T PRK10744         26 FHALKNINLDIAKNQ----VTAFIGPSGCGKS-------TLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRA   94 (260)
T ss_pred             eEEeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhc
Confidence            469999999999999    8889999999999       99999999975     589999999988742    235677


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++|+||++.+++ .|+++|+.+..... +.+..+..+++.++++.+++.    +..++.+.+|||||||||+|||||+.
T Consensus        95 ~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~  173 (260)
T PRK10744         95 KVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI  173 (260)
T ss_pred             ceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC
Confidence            8999999998877 89999998754332 233233345688899999974    45788999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       174 ~p~lllLDEPt~~LD~~~~  192 (260)
T PRK10744        174 RPEVLLLDEPCSALDPIST  192 (260)
T ss_pred             CCCEEEEcCCCccCCHHHH
Confidence            9999999999999999764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=7.4e-37  Score=231.00  Aligned_cols=149  Identities=17%  Similarity=0.143  Sum_probs=133.3

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCC
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEH   97 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~   97 (178)
                      ..|+.|+.||    .+||+|++|+|||       ||+..+.|+..|++|+++++|++......+.|-++++||+.++|.+
T Consensus        17 ~fdl~v~~ge----~vAi~GpSGaGKS-------TLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaH   85 (231)
T COG3840          17 RFDLTVPAGE----IVAILGPSGAGKS-------TLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAH   85 (231)
T ss_pred             EEEEeecCCc----EEEEECCCCccHH-------HHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchh
Confidence            4577899999    8889999999999       9999999999999999999999988777777789999999999999


Q ss_pred             CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860           98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus        98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +||.+|+.+...-.-.-..+.+++++.++..+||..+.++.|.+|||||||||++||+|+.+-.+++||||+|+|||.-|
T Consensus        86 LtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR  165 (231)
T COG3840          86 LTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALR  165 (231)
T ss_pred             hhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHH
Confidence            99999998754322122345677899999999999999999999999999999999999999999999999999999643

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.5e-36  Score=241.98  Aligned_cols=154  Identities=14%  Similarity=0.089  Sum_probs=132.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ..+.++.++|+||
T Consensus        14 ~~il~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   82 (256)
T TIGR03873        14 RLIVDGVDVTAPPGS----LTGLLGPNGSGKS-------TLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQ   82 (256)
T ss_pred             EEEEeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecc
Confidence            469999999999999    7889999999999       99999999999999999999987754  2345667999999


Q ss_pred             CCCCCCCCCHHHHHHHHHH-h---cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           91 FNGINEHLTAQEMLECFSA-L---RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~-~---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      ++.+++.+|+.||+.++.. .   ......+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++||
T Consensus        83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  162 (256)
T TIGR03873        83 DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD  162 (256)
T ss_pred             cCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            9888888999999987421 1   11112233456888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       163 EPt~~LD~~~~  173 (256)
T TIGR03873       163 EPTNHLDVRAQ  173 (256)
T ss_pred             CccccCCHHHH
Confidence            99999998764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-36  Score=240.06  Aligned_cols=149  Identities=19%  Similarity=0.240  Sum_probs=129.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+|+||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++..  ...+++.++|+||
T Consensus        16 ~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q   84 (241)
T PRK14250         16 KEILKDISVKFEGGA----IYTIVGPSGAGKS-------TLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQ   84 (241)
T ss_pred             eeeeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEec
Confidence            469999999999999    7889999999999       99999999999999999999987753  3355678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      ++.+++ .|+.||+.+......    ...+++.++++.+++. +..++.+.+|||||||||+|||||+.+|+++||||||
T Consensus        85 ~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  159 (241)
T PRK14250         85 QPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT  159 (241)
T ss_pred             Cchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            988876 699999876433221    2245678899999996 6788999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       160 ~~LD~~~~  167 (241)
T PRK14250        160 SALDPTST  167 (241)
T ss_pred             ccCCHHHH
Confidence            99999764

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-36  Score=244.28  Aligned_cols=154  Identities=16%  Similarity=0.129  Sum_probs=131.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ....++.++|+||
T Consensus        20 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   88 (265)
T PRK10253         20 YTVAENLTVEIPDGH----FTAIIGPNGCGKS-------TLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQ   88 (265)
T ss_pred             EEEeeecceEECCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeec
Confidence            469999999999999    7889999999999       99999999999999999999987754  3345568999999


Q ss_pred             CCCCCCCCCHHHHHHHHHH-hcC---CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           91 FNGINEHLTAQEMLECFSA-LRG---IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~-~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      ++.+++..|+.+|+.+... ...   .......+++.++++.+++.+..++.+.+||||||||++|||||+.+|++++||
T Consensus        89 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD  168 (265)
T PRK10253         89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD  168 (265)
T ss_pred             cCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence            9999889999999976421 110   011123446788999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       169 EPt~gLD~~~~  179 (265)
T PRK10253        169 EPTTWLDISHQ  179 (265)
T ss_pred             CccccCCHHHH
Confidence            99999998754

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-36  Score=240.52  Aligned_cols=152  Identities=17%  Similarity=0.156  Sum_probs=129.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--H-hhccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--F-QYLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~-~~~~~ig~v~   89 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|.++...  . ..++.++|+|
T Consensus        18 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   86 (237)
T PRK11614         18 IQALHEVSLHINQGE----IVTLIGANGAGKT-------TLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVP   86 (237)
T ss_pred             ceeeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEec
Confidence            579999999999999    7889999999999       999999999999999999999887543  2 2466899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      |++.+++.+|+.+|+.+.....  ...+..+.+.++++.+ ++.+..++++.+|||||||||+|||||+.+|++++||||
T Consensus        87 q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEP  164 (237)
T PRK11614         87 EGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP  164 (237)
T ss_pred             cCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence            9999999999999998743221  1222344567778888 577777889999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       165 t~~LD~~~~  173 (237)
T PRK11614        165 SLGLAPIII  173 (237)
T ss_pred             cccCCHHHH
Confidence            999999764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=4.2e-36  Score=242.32  Aligned_cols=154  Identities=16%  Similarity=0.146  Sum_probs=130.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---ccccccccccccc-------HHhhc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMH-------LFQYL   82 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~-------~~~~~   82 (178)
                      .++|++|||++.+||    +.+|+|+||+|||       ||++.+.|+.+|+   +|+++++|.++..       ....+
T Consensus        17 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   85 (262)
T PRK09984         17 HQALHAVDLNIHHGE----MVALLGPSGSGKS-------TLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSR   85 (262)
T ss_pred             eEEEecceEEEcCCc----EEEEECCCCCCHH-------HHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHH
Confidence            479999999999999    7889999999999       9999999998876   4999999987642       23456


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhc--------CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHH
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALR--------GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAM  154 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAr  154 (178)
                      ++++|+||++.+++.+|+.+|+.+.....        .....+..+++.++++.+++.+..++.+.+||+||||||+|||
T Consensus        86 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  165 (262)
T PRK09984         86 ANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIAR  165 (262)
T ss_pred             hheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHH
Confidence            78999999999999999999997643210        1111233457889999999988889999999999999999999


Q ss_pred             HHhCCCCeEEeeCCCCCCCCCCC
Q psy860          155 ALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       155 aL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ||+.+|++|||||||+|||+.++
T Consensus       166 al~~~p~llllDEPt~~LD~~~~  188 (262)
T PRK09984        166 ALMQQAKVILADEPIASLDPESA  188 (262)
T ss_pred             HHhcCCCEEEecCccccCCHHHH
Confidence            99999999999999999998754

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-36  Score=240.30  Aligned_cols=153  Identities=17%  Similarity=0.124  Sum_probs=128.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+     |++|++.++|+++..    ...+++
T Consensus        19 ~~il~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   87 (253)
T PRK14242         19 FQALHDISLEFEQNQ----VTALIGPSGCGKS-------TFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRR   87 (253)
T ss_pred             eeeecceeEEEeCCC----EEEEECCCCCCHH-------HHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhh
Confidence            469999999999999    7889999999999       99999999853     689999999988743    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++ .|+.||+.+.....+.. .....+++.++++.+++.+    ..++.+.+|||||||||+|||||+.
T Consensus        88 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~  166 (253)
T PRK14242         88 RVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV  166 (253)
T ss_pred             cEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence            8999999998887 59999998764443322 1223456788899999843    4688899999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++|||||||+|||+.++
T Consensus       167 ~p~llllDEPt~~LD~~~~  185 (253)
T PRK14242        167 EPEVLLMDEPASALDPIAT  185 (253)
T ss_pred             CCCEEEEeCCcccCCHHHH
Confidence            9999999999999998754

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.3e-36  Score=263.64  Aligned_cols=154  Identities=18%  Similarity=0.078  Sum_probs=132.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~   89 (178)
                      .++|+||||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++...  .. .+++++|+|
T Consensus        17 ~~~l~~is~~i~~Ge----~~~l~G~NGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   85 (501)
T PRK10762         17 VKALSGAALNVYPGR----VMALVGENGAGKS-------TMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIH   85 (501)
T ss_pred             eEEeeeeeEEEcCCe----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEE
Confidence            479999999999999    8889999999999       999999999999999999999876432  22 356799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhc---C-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           90 QFNGINEHLTAQEMLECFSALR---G-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~---~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      |++.+++.+||+|++.+.....   . ....+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        86 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL  165 (501)
T PRK10762         86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIM  165 (501)
T ss_pred             cchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999999999999998753221   1 11122345688899999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCC
Q psy860          166 KLPFSSQNLYNT  177 (178)
Q Consensus       166 DEPt~gLD~~~~  177 (178)
                      ||||+|||+.++
T Consensus       166 DEPt~~LD~~~~  177 (501)
T PRK10762        166 DEPTDALTDTET  177 (501)
T ss_pred             eCCcCCCCHHHH
Confidence            999999999764

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=6.6e-36  Score=238.15  Aligned_cols=154  Identities=15%  Similarity=0.147  Sum_probs=128.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--CcccccccccccccccH--Hh-hccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQAAQNSLLMTNIMHL--FQ-YLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~g~i~~~g~~~~~~--~~-~~~~ig~   87 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.  +|++|+|.++|.++...  .. .+.+++|
T Consensus        13 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (243)
T TIGR01978        13 KEILKGVNLTVKKGE----IHAIMGPNGSGKS-------TLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFL   81 (243)
T ss_pred             EEEEeccceEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEe
Confidence            469999999999999    8889999999999       9999999994  79999999999877542  22 2446999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhc-C------CCCCChhHHHHHHHHHcCCC-ccccCcCC-CCChHHHHHHHHHHHHhC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALR-G------IPGVKSGPIIDYWIDLLGLT-EYRHRVSG-RYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~-~------~~~~~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGqkQRv~IAraL~~  158 (178)
                      +||++.+++.+|+.+++.+..... .      ....+..+++.++++.+++. ...++.+. +|||||||||+|||||+.
T Consensus        82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~  161 (243)
T TIGR01978        82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL  161 (243)
T ss_pred             eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc
Confidence            999999999999999998753321 1      11122245678899999997 56788887 599999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       162 ~p~llllDEPt~~LD~~~~  180 (243)
T TIGR01978       162 EPKLAILDEIDSGLDIDAL  180 (243)
T ss_pred             CCCEEEecCCcccCCHHHH
Confidence            9999999999999999764

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=7e-36  Score=235.59  Aligned_cols=148  Identities=20%  Similarity=0.198  Sum_probs=130.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+++||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++... . ++.++|+||++
T Consensus        13 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~~~~~~~~-~-~~~~~~~~q~~   79 (223)
T TIGR03740        13 QTAVNNISLTVPKNS----VYGLLGPNGAGKS-------TLLKMITGILRPTSGEIIFDGHPWTRK-D-LHKIGSLIESP   79 (223)
T ss_pred             EEEEeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEecccc-c-cccEEEEcCCC
Confidence            469999999999999    7889999999999       999999999999999999999876432 1 24799999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|++||+.++....+.    ..+++.++++.+++.+..++.+.+||||||||++||||++.+|++++|||||+||
T Consensus        80 ~~~~~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L  155 (223)
T TIGR03740        80 PLYENLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL  155 (223)
T ss_pred             CccccCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence            988899999999876544332    2456888999999998899999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       156 D~~~~  160 (223)
T TIGR03740       156 DPIGI  160 (223)
T ss_pred             CHHHH
Confidence            99764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.5e-36  Score=241.66  Aligned_cols=153  Identities=16%  Similarity=0.169  Sum_probs=129.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|     ++|+|+++|.++..    ...+++
T Consensus        32 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~  100 (267)
T PRK14235         32 KQALFDVDLDIPEKT----VTAFIGPSGCGKS-------TFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRA  100 (267)
T ss_pred             EEEEEEEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhh
Confidence            469999999999999    7889999999999       999999999764     89999999988743    335567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCC--CCCChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHh
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGI--PGVKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      .++|+||++.+++. |+.||+.+.....+.  ...+..+++.++++.+++.+    ..++.+.+|||||||||+|||||+
T Consensus       101 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~  179 (267)
T PRK14235        101 RVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA  179 (267)
T ss_pred             ceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH
Confidence            89999999988874 999999875543332  12233456788999999953    467889999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|++|||||||+|||+.++
T Consensus       180 ~~p~lllLDEPt~~LD~~~~  199 (267)
T PRK14235        180 VSPEVILMDEPCSALDPIAT  199 (267)
T ss_pred             cCCCEEEEeCCCcCCCHHHH
Confidence            99999999999999999764

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-36  Score=250.27  Aligned_cols=162  Identities=12%  Similarity=0.045  Sum_probs=130.6

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC----cccccccccccccccH--
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP----FQAAQNSLLMTNIMHL--   78 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~----~~~g~i~~~g~~~~~~--   78 (178)
                      .|..+.|...+++||||+|..||    +.+|+|+||+|||       ||++.++|+.+    |++|+|.++|+++...  
T Consensus        12 ~y~~~~~~~~~l~~vsl~i~~Ge----~~~ivG~sGsGKS-------TLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~   80 (330)
T PRK15093         12 EFKTSDGWVKAVDRVSMTLTEGE----IRGLVGESGSGKS-------LIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             EEeCCCCCEEEEeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence            35333344579999999999999    7889999999999       99999999986    5899999999987542  


Q ss_pred             H---hh-ccceEEecCCCC--CCCCCCHHHHHHHHHHhc---CC---CCCChhHHHHHHHHHcCCCc---cccCcCCCCC
Q psy860           79 F---QY-LSGIGYCPQFNG--INEHLTAQEMLECFSALR---GI---PGVKSGPIIDYWIDLLGLTE---YRHRVSGRYS  143 (178)
Q Consensus        79 ~---~~-~~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~---~~---~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LS  143 (178)
                      .   .. ++.|+||||++.  +++.+|+.+++.......   +.   ...+.++++.++++.++|.+   ..++++.+||
T Consensus        81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS  160 (330)
T PRK15093         81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT  160 (330)
T ss_pred             HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence            2   22 357999999975  678899999987532211   10   11233457889999999974   4589999999


Q ss_pred             hHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          144 GGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       144 gGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |||||||+|||||+.+|++||+||||++||+.++
T Consensus       161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~  194 (330)
T PRK15093        161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQ  194 (330)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHH
Confidence            9999999999999999999999999999998764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.8e-36  Score=267.11  Aligned_cols=154  Identities=17%  Similarity=0.169  Sum_probs=133.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      ..+|++|||+|++||    +.+|+|+||||||       ||++.++|+.+|++|+|+++|+++...     ..++++|+|
T Consensus       337 ~~~l~~vs~~i~~Ge----~~~lvG~nGsGKS-------TLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~  405 (623)
T PRK10261        337 VHAVEKVSFDLWPGE----TLSLVGESGSGKS-------TTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQF  405 (623)
T ss_pred             eEEEeeeEeEEcCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEE
Confidence            468999999999999    7889999999999       999999999999999999999877532     235678999


Q ss_pred             ecCCC--CCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           88 CPQFN--GINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        88 v~Q~~--~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      +||++  .+++.+||.+++.+.....+. ...+.++++.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus       406 v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~ll  485 (623)
T PRK10261        406 IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVI  485 (623)
T ss_pred             EecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            99997  588999999999875444332 2223446788999999996 6789999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||++||+.++
T Consensus       486 llDEPts~LD~~~~  499 (623)
T PRK10261        486 IADEAVSALDVSIR  499 (623)
T ss_pred             EEeCCcccCCHHHH
Confidence            99999999998764

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=5.4e-36  Score=233.42  Aligned_cols=140  Identities=16%  Similarity=0.128  Sum_probs=123.2

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC---cccccccccccccccH-H
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP---FQAAQNSLLMTNIMHL-F   79 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~---~~~g~i~~~g~~~~~~-~   79 (178)
                      |.|.++-+..++|+++||+|++||    +.+|+|+||+|||       ||++.+.|+.+   |++|++.++|.++... .
T Consensus        11 ~~~~~~~~~~~il~~~s~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~   79 (202)
T cd03233          11 FTTGKGRSKIPILKDFSGVVKPGE----MVLVLGRPGSGCS-------TLLKALANRTEGNVSVEGDIHYNGIPYKEFAE   79 (202)
T ss_pred             EEeccCCCCceeeeeEEEEECCCc----EEEEECCCCCCHH-------HHHHHhcccCCCCCCcceEEEECCEECccchh
Confidence            678777666789999999999999    8889999999999       99999999988   8999999999887653 3


Q ss_pred             hhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           80 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        80 ~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ..++.++|+||++.+++.+|++||+.+.....                       .++.+.+||+|||||++|||||+.+
T Consensus        80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral~~~  136 (202)
T cd03233          80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEALVSR  136 (202)
T ss_pred             hhcceEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHHhhC
Confidence            45678999999999999999999987643210                       5677899999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |+++||||||+|||+.++
T Consensus       137 p~llllDEPt~~LD~~~~  154 (202)
T cd03233         137 ASVLCWDNSTRGLDSSTA  154 (202)
T ss_pred             CCEEEEcCCCccCCHHHH
Confidence            999999999999999764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-36  Score=262.76  Aligned_cols=155  Identities=15%  Similarity=0.039  Sum_probs=132.7

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc--ccccccccccccccH--H-hhccceE
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF--QAAQNSLLMTNIMHL--F-QYLSGIG   86 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~--~~g~i~~~g~~~~~~--~-~~~~~ig   86 (178)
                      ..++|+||||+|+.||    +.+|+|+||||||       ||++.+.|+.+|  ++|+|.++|.++...  . ..++.++
T Consensus        17 ~~~il~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   85 (506)
T PRK13549         17 GVKALDNVSLKVRAGE----IVSLCGENGAGKS-------TLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIA   85 (506)
T ss_pred             CeEeecceeEEEeCCe----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeE
Confidence            3579999999999999    8889999999999       999999999886  899999999887542  2 2356799


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhc--C-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           87 YCPQFNGINEHLTAQEMLECFSALR--G-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      |+||++.+++.+|++||+.+.....  + ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus        86 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll  165 (506)
T PRK13549         86 IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLL  165 (506)
T ss_pred             EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999999999999999998754322  1 122233456889999999998889999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       166 lLDEPt~~LD~~~~  179 (506)
T PRK13549        166 ILDEPTASLTESET  179 (506)
T ss_pred             EEeCCCCCCCHHHH
Confidence            99999999999764

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-35  Score=237.54  Aligned_cols=154  Identities=15%  Similarity=0.111  Sum_probs=129.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--c---cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--F---QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~---~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+|+||+|++||    +.+|+|+||+|||       ||++.+.|+.+  |   ++|++.++|.++..    ...+++
T Consensus        17 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~   85 (252)
T PRK14256         17 NHAVKDVSMDFPENS----VTAIIGPSGCGKS-------TVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRR   85 (252)
T ss_pred             eeEEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhc
Confidence            469999999999999    7889999999999       99999999975  4   68999999988743    235677


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++.+|+.||+.+.....+. ...+..+++.++++.+++.    +..++.+.+|||||||||+|||||+.
T Consensus        86 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~  165 (252)
T PRK14256         86 RVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV  165 (252)
T ss_pred             cEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc
Confidence            899999999999999999999865433221 2223345678889999985    35678899999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       166 ~p~llllDEP~~gLD~~~~  184 (252)
T PRK14256        166 KPEVILMDEPASALDPIST  184 (252)
T ss_pred             CCCEEEEcCCcccCCHHHH
Confidence            9999999999999999764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.4e-36  Score=241.39  Aligned_cols=152  Identities=14%  Similarity=0.097  Sum_probs=128.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----cccccccccccccc----cHHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIM----HLFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~----~~~~~~~   83 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+     |++|++.++|.++.    +...+++
T Consensus        26 ~~il~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~   94 (269)
T PRK14259         26 FEAVKNVFCDIPRGK----VTALIGPSGCGKS-------TVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRR   94 (269)
T ss_pred             EEEEcceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhh
Confidence            469999999999999    7889999999999       99999999976     69999999998764    2345667


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      .++|+||++.+++ .|++||+.+.....+.. .+..+++.++++.+++.    +..++++.+|||||||||+|||||+.+
T Consensus        95 ~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  172 (269)
T PRK14259         95 RIGMVFQQPNPFP-KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE  172 (269)
T ss_pred             ceEEEccCCccch-hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence            8999999998887 49999998765443322 22345677788888773    457889999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|||||||+|||+.++
T Consensus       173 p~lllLDEPt~gLD~~~~  190 (269)
T PRK14259        173 PEVILMDEPCSALDPIST  190 (269)
T ss_pred             CCEEEEcCCCccCCHHHH
Confidence            999999999999998754

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=237.68  Aligned_cols=153  Identities=16%  Similarity=0.149  Sum_probs=129.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC---Cccccccccccccccc--HHhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS---PFQAAQNSLLMTNIMH--LFQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~---~~~~g~i~~~g~~~~~--~~~~~~~ig~   87 (178)
                      .++|+|+||+|.+||    +.+|+|+||+|||       ||++++.|+.   +|++|+|.++|+++..  ...+++.++|
T Consensus        15 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~   83 (246)
T PRK14269         15 KQALFDINMQIEQNK----ITALIGASGCGKS-------TFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGM   83 (246)
T ss_pred             EeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEE
Confidence            479999999999999    8889999999999       9999999986   3799999999998754  3455678999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCC--CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIP--GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +||++.+++ .|++||+.++....+..  ....++++.++++.+++.    +..++.+.+|||||||||+|||||+.+|+
T Consensus        84 ~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  162 (246)
T PRK14269         84 VFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPK  162 (246)
T ss_pred             EecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            999998886 69999998765443321  123345678899999995    34678899999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +++|||||+|||+.++
T Consensus       163 lllLDEP~~~LD~~~~  178 (246)
T PRK14269        163 LLLLDEPTSALDPISS  178 (246)
T ss_pred             EEEEcCCcccCCHHHH
Confidence            9999999999998754

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-36  Score=262.11  Aligned_cols=155  Identities=19%  Similarity=0.056  Sum_probs=132.1

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEe
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYC   88 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v   88 (178)
                      ..++|+||||+|+.||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++...  .+ .+++++|+
T Consensus        17 ~~~il~~vs~~i~~Ge----~~~liG~nGsGKS-------TLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v   85 (510)
T PRK09700         17 PVHALKSVNLTVYPGE----IHALLGENGAGKS-------TLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII   85 (510)
T ss_pred             CeEEeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence            3469999999999999    7889999999999       999999999999999999999887542  22 34579999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHH----hcCC---CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           89 PQFNGINEHLTAQEMLECFSA----LRGI---PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~----~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      ||++.+++.+||.||+.+...    ..+.   ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~  165 (510)
T PRK09700         86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK  165 (510)
T ss_pred             eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999999976421    1111   111234568889999999988999999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|||||||+|||+.++
T Consensus       166 lllLDEPt~~LD~~~~  181 (510)
T PRK09700        166 VIIMDEPTSSLTNKEV  181 (510)
T ss_pred             EEEEeCCCCCCCHHHH
Confidence            9999999999999764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.9e-36  Score=266.62  Aligned_cols=162  Identities=14%  Similarity=0.076  Sum_probs=133.5

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--------
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--------   76 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--------   76 (178)
                      .|.++-+..++|+||||+|..||    +.+|+|+||||||       ||++++.|+.+|++|.|.++|..+.        
T Consensus        21 ~y~~~~~~~~~l~~is~~v~~Ge----~~~lvG~nGsGKS-------TLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~   89 (623)
T PRK10261         21 AFMQEQQKIAAVRNLSFSLQRGE----TLAIVGESGSGKS-------VTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE   89 (623)
T ss_pred             EecCCCCceeEEEeeEEEECCCC----EEEEECCCCChHH-------HHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence            45332233579999999999999    8889999999999       9999999999999999988876331        


Q ss_pred             --c-----HHhhc-cceEEecCCC--CCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCc---cccCcCCCC
Q psy860           77 --H-----LFQYL-SGIGYCPQFN--GINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRY  142 (178)
Q Consensus        77 --~-----~~~~~-~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~L  142 (178)
                        +     ..+++ +.||||||++  .+++.+||.||+.+..... +....+.++++.++++.+||.+   ..++++.+|
T Consensus        90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L  169 (623)
T PRK10261         90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL  169 (623)
T ss_pred             cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence              1     12233 4799999998  6788899999998865442 3443345567889999999963   578999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          143 SGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       143 SgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ||||||||+|||||+.+|++|||||||++||+.++
T Consensus       170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~  204 (623)
T PRK10261        170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQ  204 (623)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHH
Confidence            99999999999999999999999999999999764

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-35  Score=237.02  Aligned_cols=153  Identities=18%  Similarity=0.185  Sum_probs=129.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+++||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|     ++|++.++|.++..    ....++
T Consensus        17 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   85 (251)
T PRK14270         17 KQALNDINLPIYENK----ITALIGPSGCGKS-------TFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRK   85 (251)
T ss_pred             eeeeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHh
Confidence            469999999999999    7889999999999       999999999764     79999999988743    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++ .|++||+.+.....+.. ..+..+++.++++.+++.    +..++.+.+||+||||||+|||||+.
T Consensus        86 ~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  164 (251)
T PRK14270         86 RVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV  164 (251)
T ss_pred             heEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence            8999999998887 89999998765443321 223345677889999874    45788999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       165 ~p~llllDEP~~~LD~~~~  183 (251)
T PRK14270        165 KPDVILMDEPTSALDPIST  183 (251)
T ss_pred             CCCEEEEeCCcccCCHHHH
Confidence            9999999999999999764

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-35  Score=236.48  Aligned_cols=153  Identities=18%  Similarity=0.150  Sum_probs=128.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--c---cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--F---QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~---~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      +++++|+||+|++||    +.+|+|+||+|||       ||++.+.|+.+  |   ++|+|.++|.++..    ...+++
T Consensus        16 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   84 (250)
T PRK14240         16 FQALKKINLDIEENQ----VTALIGPSGCGKS-------TFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRK   84 (250)
T ss_pred             ceeeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhc
Confidence            479999999999999    7889999999999       99999999865  2   69999999988753    234577


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++ .|+.+|+.+.....+.. ..+..+++.++++.+++.    +..++++.+|||||||||+|||||+.
T Consensus        85 ~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~  163 (250)
T PRK14240         85 RVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV  163 (250)
T ss_pred             cEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence            8999999988877 89999998765443322 122345678888888874    45688999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       164 ~p~llllDEP~~~LD~~~~  182 (250)
T PRK14240        164 EPEVLLMDEPTSALDPIST  182 (250)
T ss_pred             CCCEEEEeCCCccCCHHHH
Confidence            9999999999999999764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.4e-35  Score=256.07  Aligned_cols=157  Identities=18%  Similarity=0.179  Sum_probs=136.5

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc----ccHHhhccce
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI----MHLFQYLSGI   85 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~----~~~~~~~~~i   85 (178)
                      .+...+++||||++.+||    ..+|+|.||||||       |+.+.+.|+.+|++|.+.++|.+.    .+....|+.+
T Consensus       301 ~~~~~Av~~VSf~l~~GE----~lglVGeSGsGKS-------Tlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~  369 (539)
T COG1123         301 RGEVKAVDDVSFDLREGE----TLGLVGESGSGKS-------TLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRI  369 (539)
T ss_pred             ccceeeeeeeeeEecCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhhe
Confidence            355789999999999999    6669999999999       999999999999999999999872    1234567789


Q ss_pred             EEecCCC--CCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           86 GYCPQFN--GINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        86 g~v~Q~~--~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      -++||+|  .++|.+||.+++......... ...+.++++.++++.++|.+ ..+++|++|||||||||+|||||+.+|+
T Consensus       370 QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~  449 (539)
T COG1123         370 QMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPK  449 (539)
T ss_pred             EEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCC
Confidence            9999987  699999999999887765432 23455567999999999984 8999999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|++|||||.||+..+
T Consensus       450 lli~DEp~SaLDvsvq  465 (539)
T COG1123         450 LLILDEPVSALDVSVQ  465 (539)
T ss_pred             EEEecCCccccCHHHH
Confidence            9999999999999753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.3e-36  Score=223.91  Aligned_cols=155  Identities=17%  Similarity=0.115  Sum_probs=139.6

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEE
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGY   87 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~   87 (178)
                      .+..++|+++||.+++||    |.+|.||+|||||       |+++.+.-+.+|++|.+++.|+++..  +..+|..|+|
T Consensus        13 a~~a~il~~isl~v~~Ge----~iaitGPSG~GKS-------tllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY   81 (223)
T COG4619          13 AGDAKILNNISLSVRAGE----FIAITGPSGCGKS-------TLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY   81 (223)
T ss_pred             cCCCeeecceeeeecCCc----eEEEeCCCCccHH-------HHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence            344689999999999999    9999999999999       99999999999999999999999875  5778999999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      |.|.|.+|+. ||++|+.|+..++..  +-++.++.+.++.+++. ...++.+.+||||+|||++|+|-|..-|++|+||
T Consensus        82 ~~Q~paLfg~-tVeDNlifP~~~r~r--r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD  158 (223)
T COG4619          82 CAQTPALFGD-TVEDNLIFPWQIRNR--RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD  158 (223)
T ss_pred             HHcCcccccc-chhhccccchHHhcc--CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence            9999999875 999999998777643  23567788999999997 5779999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q psy860          167 LPFSSQNLYNTT  178 (178)
Q Consensus       167 EPt~gLD~~~~~  178 (178)
                      ||||+||+.+.+
T Consensus       159 E~TsALD~~nkr  170 (223)
T COG4619         159 EITSALDESNKR  170 (223)
T ss_pred             CchhhcChhhHH
Confidence            999999998753

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.6e-36  Score=242.71  Aligned_cols=161  Identities=15%  Similarity=0.147  Sum_probs=135.6

Q ss_pred             hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-c----ccccccccccccccHH-
Q psy860            6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-F----QAAQNSLLMTNIMHLF-   79 (178)
Q Consensus         6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~----~~g~i~~~g~~~~~~~-   79 (178)
                      |....|...+++||||+|.+||    ..+|+|.||||||       ++.+.++|+++ |    .+|++.++|+++..+. 
T Consensus        11 f~~~~g~v~av~~vs~~i~~GE----~lgiVGESGsGKS-------~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~   79 (316)
T COG0444          11 FPTDAGVVKAVDGVSFELKKGE----ILGIVGESGSGKS-------VLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE   79 (316)
T ss_pred             EecCCccEEEEeceeEEEcCCc----EEEEEcCCCCCHH-------HHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence            4555567889999999999999    6779999999999       88999999986 3    6789999999875432 


Q ss_pred             ----hhc-cceEEecCCC--CCCCCCCHHHHHHHHHHhc-CC-CCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHH
Q psy860           80 ----QYL-SGIGYCPQFN--GINEHLTAQEMLECFSALR-GI-PGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNK  147 (178)
Q Consensus        80 ----~~~-~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~-~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqk  147 (178)
                          ++| +.|+|+||++  .+.|-+|+.+.+.-..... +. .+++..+++.++|+.+++.+   ..+.+|++|||||+
T Consensus        80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr  159 (316)
T COG0444          80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR  159 (316)
T ss_pred             HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence                343 5799999997  5899999998887655543 23 34556778999999999974   66999999999999


Q ss_pred             HHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          148 RKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       148 QRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |||.||.||+.+|++||.||||++||+..+
T Consensus       160 QRV~IAmala~~P~LlIADEPTTALDvt~Q  189 (316)
T COG0444         160 QRVMIAMALALNPKLLIADEPTTALDVTVQ  189 (316)
T ss_pred             HHHHHHHHHhCCCCEEEeCCCcchhhHHHH
Confidence            999999999999999999999999998654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=258.50  Aligned_cols=154  Identities=14%  Similarity=0.010  Sum_probs=132.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~   89 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|+++..   ....+++++|+|
T Consensus        11 ~~il~~vs~~i~~Ge----~~~liG~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   79 (491)
T PRK10982         11 VKALDNVNLKVRPHS----IHALMGENGAGKS-------TLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH   79 (491)
T ss_pred             EEeeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            479999999999999    7889999999999       99999999999999999999987743   223456899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHH-hcCC--CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           90 QFNGINEHLTAQEMLECFSA-LRGI--PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~-~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      |++.+++.+||.||+.+... ..+.  ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD  159 (491)
T PRK10982         80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD  159 (491)
T ss_pred             cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            99988999999999976431 1111  11223456888999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       160 EPt~~LD~~~~  170 (491)
T PRK10982        160 EPTSSLTEKEV  170 (491)
T ss_pred             CCCCCCCHHHH
Confidence            99999999754

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-35  Score=237.56  Aligned_cols=153  Identities=18%  Similarity=0.171  Sum_probs=128.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--c---cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--F---QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~---~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+++||+|++||    +.+|+|+||+|||       ||++.+.|+.+  |   ++|++.++|.++..    ...+++
T Consensus        25 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~   93 (259)
T PRK14274         25 HHALKNINLSIPENE----VTAIIGPSGCGKS-------TFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRK   93 (259)
T ss_pred             eeeEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhh
Confidence            479999999999999    8889999999999       99999999976  3   68999999988742    335567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++. |++||+.+.....+.. ..+..+++.++++.+++.    +..++.+.+|||||||||+|||||+.
T Consensus        94 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~  172 (259)
T PRK14274         94 NIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT  172 (259)
T ss_pred             ceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence            89999999988875 9999998764443321 122345677889999985    34688999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       173 ~p~llllDEPt~~LD~~~~  191 (259)
T PRK14274        173 NPDVLLMDEPTSALDPVST  191 (259)
T ss_pred             CCCEEEEcCCcccCCHHHH
Confidence            9999999999999999764

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=259.23  Aligned_cols=154  Identities=16%  Similarity=0.007  Sum_probs=132.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~   89 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|.++..   ...++++++|+|
T Consensus        17 ~~il~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~   85 (501)
T PRK11288         17 VKALDDISFDCRAGQ----VHALMGENGAGKS-------TLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIY   85 (501)
T ss_pred             EEEEeeeeEEEeCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEE
Confidence            469999999999999    7889999999999       99999999999999999999987643   223567899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHH--hcC-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           90 QFNGINEHLTAQEMLECFSA--LRG-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~--~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      |++.+++.+|+.+|+.+...  ..+ ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD  165 (501)
T PRK11288         86 QELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD  165 (501)
T ss_pred             echhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence            99999999999999987431  111 122233457888999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       166 EPt~~LD~~~~  176 (501)
T PRK11288        166 EPTSSLSAREI  176 (501)
T ss_pred             CCCCCCCHHHH
Confidence            99999999764

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-35  Score=240.46  Aligned_cols=152  Identities=14%  Similarity=0.108  Sum_probs=129.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+++||+|.+||    +.+|+|+||+|||       ||++.+.|+.+     |++|+|.++|.++..    ...+++
T Consensus        52 ~~il~~is~~i~~Ge----~~~I~G~nGsGKS-------TLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~  120 (285)
T PRK14254         52 EQALDDVSMDIPENQ----VTAMIGPSGCGKS-------TFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRR  120 (285)
T ss_pred             EeeEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhc
Confidence            469999999999999    8889999999999       99999999976     689999999987642    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      +++|+||++.+++. |+.||+.+.....+.+ .+..+++.++++.+++.    +..++++.+|||||||||+|||||+.+
T Consensus       121 ~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~  198 (285)
T PRK14254        121 RIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD  198 (285)
T ss_pred             cEEEEecCCccCcC-CHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence            89999999888775 9999998765443332 23455788899999984    456889999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|||||||+|||+.++
T Consensus       199 p~lLLLDEPts~LD~~~~  216 (285)
T PRK14254        199 PEVILMDEPASALDPVAT  216 (285)
T ss_pred             CCEEEEeCCCCCCCHHHH
Confidence            999999999999999754

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.6e-35  Score=286.09  Aligned_cols=155  Identities=29%  Similarity=0.470  Sum_probs=140.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~   91 (178)
                      .+|++||||+|++||    +.+|+|+||+|||       |+++.+.|+.+|++|+|.++|.++.. ..+.++.||||||+
T Consensus      1952 ~~aL~~ISf~I~~GE----i~gLLG~NGAGKT-------TLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~ 2020 (2272)
T TIGR01257      1952 SPAVDRLCVGVRPGE----CFGLLGVNGAGKT-------TTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQF 2020 (2272)
T ss_pred             ceEEEeeEEEEcCCc----EEEEECCCCCcHH-------HHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEecc
Confidence            469999999999999    7779999999999       99999999999999999999998753 44567789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++.+|++|++.++...++.+.++.++.++++++.++|.+..++++++|||||||||+||+||+++|++++|||||+|
T Consensus      2021 ~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsG 2100 (2272)
T TIGR01257      2021 DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTG 2100 (2272)
T ss_pred             ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            99999999999999988777765555566788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          172 QNLYNTT  178 (178)
Q Consensus       172 LD~~~~~  178 (178)
                      |||.+++
T Consensus      2101 LDp~sr~ 2107 (2272)
T TIGR01257      2101 MDPQARR 2107 (2272)
T ss_pred             CCHHHHH
Confidence            9998753

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1.3e-35  Score=259.54  Aligned_cols=150  Identities=18%  Similarity=0.096  Sum_probs=131.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh-ccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY-LSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~-~~~ig~v~   89 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++...  .+. +++++|+|
T Consensus        24 ~~il~~vsl~i~~Ge----~~~liG~NGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   92 (510)
T PRK15439         24 VEVLKGIDFTLHAGE----VHALLGGNGAGKS-------TLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVP   92 (510)
T ss_pred             ceeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            469999999999999    7889999999999       999999999999999999999877532  222 35799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |++.+++.+||.||+.+...    ...+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        93 q~~~~~~~~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt  168 (510)
T PRK15439         93 QEPLLFPNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT  168 (510)
T ss_pred             ccCccCCCCcHHHHhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            99999999999999976421    11234567889999999998899999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       169 ~~LD~~~~  176 (510)
T PRK15439        169 ASLTPAET  176 (510)
T ss_pred             CCCCHHHH
Confidence            99999764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.4e-35  Score=258.20  Aligned_cols=154  Identities=12%  Similarity=0.024  Sum_probs=130.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--Cccccccccc-------------------
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQAAQNSLL-------------------   71 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~g~i~~~-------------------   71 (178)
                      .++|++|||+|+.||    +.+|+|+||||||       ||++.+.|+.  +|++|+|.++                   
T Consensus        13 ~~~l~~is~~i~~Ge----~~~iiG~nGsGKS-------TLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~   81 (520)
T TIGR03269        13 KEVLKNISFTIEEGE----VLGILGRSGAGKS-------VLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEP   81 (520)
T ss_pred             eEeeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhhcccCCCCceEEEEeccccccccccccccccccc
Confidence            479999999999999    8889999999999       9999999996  7999999886                   


Q ss_pred             ----ccccc-------c-----HHhhccceEEecCC-CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc
Q psy860           72 ----MTNIM-------H-----LFQYLSGIGYCPQF-NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY  134 (178)
Q Consensus        72 ----g~~~~-------~-----~~~~~~~ig~v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~  134 (178)
                          |.++.       .     ...+++.++|+||+ +.+++.+|+.|++.+.....+.+..+.++++.++++.+++.+.
T Consensus        82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~  161 (520)
T TIGR03269        82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHR  161 (520)
T ss_pred             cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence                22220       0     12346679999997 6788889999999876544443333445678899999999988


Q ss_pred             ccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          135 RHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       135 ~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      .++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus       162 ~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~  204 (520)
T TIGR03269       162 ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTA  204 (520)
T ss_pred             hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHH
Confidence            8999999999999999999999999999999999999999764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=2.7e-35  Score=236.65  Aligned_cols=152  Identities=17%  Similarity=0.100  Sum_probs=127.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc----ccccccccccccccHHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF----QAAQNSLLMTNIMHLFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~----~~g~i~~~g~~~~~~~~~~~~ig~v   88 (178)
                      .++|+++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|    ++|++.++|.++......++.++|+
T Consensus        16 ~~il~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v   84 (254)
T PRK10418         16 QPLVHGVSLTLQRGR----VLALVGGSGSGKS-------LTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATI   84 (254)
T ss_pred             cceecceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEE
Confidence            368999999999999    8889999999999       999999999998    9999999998875332234579999


Q ss_pred             cCCCC--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           89 PQFNG--INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        89 ~Q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      ||++.  +.+..|+.+++.+.....+..  ...+++.++++.+++.+   ..++.+.+|||||||||+|||||+.+|++|
T Consensus        85 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL  162 (254)
T PRK10418         85 MQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI  162 (254)
T ss_pred             ecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence            99974  445678988876644333322  23467889999999976   568999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       163 lLDEPt~~LD~~~~  176 (254)
T PRK10418        163 IADEPTTDLDVVAQ  176 (254)
T ss_pred             EEeCCCcccCHHHH
Confidence            99999999998754

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=4.4e-35  Score=243.35  Aligned_cols=136  Identities=21%  Similarity=0.201  Sum_probs=119.6

Q ss_pred             hhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCC
Q psy860           35 LRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIP  114 (178)
Q Consensus        35 i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~  114 (178)
                      |+|+||+|||       ||++++.|+.+|++|+|.++|+++......++.++|+||++.+++++|+.||+.+.....+..
T Consensus         1 l~G~nGsGKS-------TLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~   73 (325)
T TIGR01187         1 LLGPSGCGKT-------TLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP   73 (325)
T ss_pred             CcCCCCCCHH-------HHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC
Confidence            5799999999       999999999999999999999987654444668999999999999999999999875544433


Q ss_pred             CCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          115 GVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       115 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|||+.++
T Consensus        74 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~  136 (325)
T TIGR01187        74 RAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR  136 (325)
T ss_pred             HHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHH
Confidence            333455788999999999999999999999999999999999999999999999999998754

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.5e-35  Score=284.71  Aligned_cols=154  Identities=24%  Similarity=0.312  Sum_probs=140.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~   91 (178)
                      .++++||||++++||    +.+|+|+||+|||       |+++.+.|+.+|++|++.++|.++.. ..++|+.+|||||+
T Consensus       943 k~aL~~lsl~I~~Ge----i~aLLG~NGAGKS-------TLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~ 1011 (2272)
T TIGR01257       943 RPAVDRLNITFYENQ----ITAFLGHNGAGKT-------TTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQH 1011 (2272)
T ss_pred             ceEEEeeEEEEcCCc----EEEEECCCCChHH-------HHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecC
Confidence            579999999999999    7889999999999       99999999999999999999998753 44567889999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++.+||+||+.++.+.++.+..+.+++++++++.++|.+..++++.+|||||||||+||+||+.+|++++|||||+|
T Consensus      1012 ~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSG 1091 (2272)
T TIGR01257      1012 NILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091 (2272)
T ss_pred             CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence            99999999999999987776655445566789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      |||.++
T Consensus      1092 LDp~sr 1097 (2272)
T TIGR01257      1092 VDPYSR 1097 (2272)
T ss_pred             CCHHHH
Confidence            999865

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-35  Score=257.95  Aligned_cols=153  Identities=16%  Similarity=0.174  Sum_probs=129.3

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEecC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCPQ   90 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~Q   90 (178)
                      .+|+||||+|+.||    +.+|+|+||+|||       ||++++.|+.+|++|+|+++|+++..   ....+++++|+||
T Consensus       277 ~~l~~isl~i~~Ge----~~~l~G~NGsGKS-------TLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q  345 (510)
T PRK09700        277 KKVRDISFSVCRGE----ILGFAGLVGSGRT-------ELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE  345 (510)
T ss_pred             CcccceeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccC
Confidence            48999999999999    7889999999999       99999999999999999999987643   2245668999999


Q ss_pred             C---CCCCCCCCHHHHHHHHHHhc--------CC-CCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHh
Q psy860           91 F---NGINEHLTAQEMLECFSALR--------GI-PGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        91 ~---~~l~~~ltv~e~l~~~~~~~--------~~-~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      +   ..+++++|+.||+.+.....        +. .....++++.++++.+++. +..++++.+|||||||||+|||||+
T Consensus       346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~  425 (510)
T PRK09700        346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC  425 (510)
T ss_pred             ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh
Confidence            8   46888999999997642210        11 1112234678899999997 7889999999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|++|||||||+|||+.++
T Consensus       426 ~~p~lLlLDEPt~~LD~~~~  445 (510)
T PRK09700        426 CCPEVIIFDEPTRGIDVGAK  445 (510)
T ss_pred             cCCCEEEECCCCCCcCHHHH
Confidence            99999999999999999764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.1e-35  Score=258.58  Aligned_cols=153  Identities=13%  Similarity=0.098  Sum_probs=128.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccc-ccc---ccc-----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLL-MTN---IMH-----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~-g~~---~~~-----~~~~~~   83 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++ |.+   +..     ....++
T Consensus       297 ~~il~~is~~i~~Ge----~~~l~G~NGsGKS-------TLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~  365 (520)
T TIGR03269       297 VKAVDNVSLEVKEGE----IFGIVGTSGAGKT-------TLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKR  365 (520)
T ss_pred             ceEEeeEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhh
Confidence            469999999999999    8889999999999       99999999999999999995 542   221     123456


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-----cccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-----YRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++|+||++.+++.+|+.|++.+.... ..+..+.++++.++++.+++.+     ..++++.+|||||||||+|||||+.
T Consensus       366 ~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~  444 (520)
T TIGR03269       366 YIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK  444 (520)
T ss_pred             hEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            799999999899999999999875322 2222223456788999999974     5789999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++|||||||+|||+.++
T Consensus       445 ~p~lLllDEPt~~LD~~~~  463 (520)
T TIGR03269       445 EPRIVILDEPTGTMDPITK  463 (520)
T ss_pred             CCCEEEEeCCcccCCHHHH
Confidence            9999999999999999764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=2.2e-35  Score=232.04  Aligned_cols=147  Identities=20%  Similarity=0.196  Sum_probs=124.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+++++|.++..  ...+++.++|+||
T Consensus        17 ~~~l~~i~~~i~~G~----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   85 (220)
T cd03245          17 IPALDNVSLTIRAGE----KVAIIGRVGSGKS-------TLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ   85 (220)
T ss_pred             cccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCC
Confidence            469999999999999    8889999999999       99999999999999999999987643  2345678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcC-----------CCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS-----------GRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++ .|+.||+.+...      ....+.+.++++.+++.+..++.+           .+|||||||||+|||||+.+
T Consensus        86 ~~~~~~-~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~  158 (220)
T cd03245          86 DVTLFY-GTLRDNITLGAP------LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND  158 (220)
T ss_pred             CCcccc-chHHHHhhcCCC------CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            998776 699999865311      112345677888888877666654           69999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |+++||||||+|||+.++
T Consensus       159 p~llllDEPt~~LD~~~~  176 (220)
T cd03245         159 PPILLLDEPTSAMDMNSE  176 (220)
T ss_pred             CCEEEEeCccccCCHHHH
Confidence            999999999999999764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.5e-35  Score=234.75  Aligned_cols=153  Identities=18%  Similarity=0.114  Sum_probs=127.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--Cc---cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PF---QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~---~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++++++||+|++||    +.+|+|+||+|||       ||++.+.|+.  .|   ++|+|.++|.++..    ...+++
T Consensus        18 ~~~l~~~s~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~   86 (252)
T PRK14239         18 KKALNSVSLDFYPNE----ITALIGPSGSGKS-------TLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRK   86 (252)
T ss_pred             eeeeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhh
Confidence            469999999999999    8889999999999       9999999984  36   59999999987742    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++ .|+.||+.+.....+.... ...+.+.++++.+++.    +..++.+.+|||||||||+|||||+.
T Consensus        87 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  165 (252)
T PRK14239         87 EIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT  165 (252)
T ss_pred             cEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc
Confidence            8999999998876 8999999876444333222 2345677889999874    45688999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       166 ~p~llllDEPt~~LD~~~~  184 (252)
T PRK14239        166 SPKIILLDEPTSALDPISA  184 (252)
T ss_pred             CCCEEEEcCCccccCHHHH
Confidence            9999999999999998754

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-35  Score=234.51  Aligned_cols=153  Identities=16%  Similarity=0.099  Sum_probs=127.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc---CCc--cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF---SPF--QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~---~~~--~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|++|||+|..||    +.+|+|+||+|||       ||++.+.|+   .+|  ++|++.++|.++..    ...+++
T Consensus        16 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   84 (250)
T PRK14245         16 FHALKGISMEIEEKS----VVAFIGPSGCGKS-------TFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRK   84 (250)
T ss_pred             EeEEeeeeEEEeCCC----EEEEECCCCCCHH-------HHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhh
Confidence            469999999999999    7889999999999       999999886   354  58999999988753    245667


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++|+||++.+++ .|+.||+.+.....+... .+..+.+.++++.+++.+    ..++++.+|||||||||+|||||+.
T Consensus        85 ~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  163 (250)
T PRK14245         85 NVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV  163 (250)
T ss_pred             heEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence            8999999988876 699999987544433221 123456788899999853    5688899999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       164 ~p~lllLDEPt~~LD~~~~  182 (250)
T PRK14245        164 SPSVLLMDEPASALDPIST  182 (250)
T ss_pred             CCCEEEEeCCCccCCHHHH
Confidence            9999999999999999764

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=2.6e-35  Score=258.33  Aligned_cols=152  Identities=20%  Similarity=0.209  Sum_probs=127.2

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-Hhhc
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYL   82 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~   82 (178)
                      |.|+++   .++|+|+||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+. .++|
T Consensus       342 f~Y~~~---~~vL~~isl~i~~G~----~vaIvG~SGsGKS-------TLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr  407 (529)
T TIGR02868       342 FGYPGS---PPVLDGVSLDLPPGE----RVAILGPSGSGKS-------TLLMLLTGLLDPLQGEVTLDGVSVSSLQDELR  407 (529)
T ss_pred             EecCCC---CceeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEEhhhHHHHHH
Confidence            567543   269999999999999    8889999999999       999999999999999999999988765 4578


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cCc----CCCCChHHHHHHH
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HRV----SGRYSGGNKRKLS  151 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~LSgGqkQRv~  151 (178)
                      +.|+||||++.+|.. |++||+.++.     + ....+++.++++..++.+..       |..    -..||||||||++
T Consensus       408 ~~i~~V~Q~~~lF~~-TI~eNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia  480 (529)
T TIGR02868       408 RRISVFAQDAHLFDT-TVRDNLRLGR-----P-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA  480 (529)
T ss_pred             hheEEEccCcccccc-cHHHHHhccC-----C-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence            899999999998754 9999998741     1 22345677888887775432       333    3469999999999


Q ss_pred             HHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          152 TAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       152 IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      |||||+.+|++++||||||+||+.+
T Consensus       481 iARall~~~~iliLDE~TSaLD~~t  505 (529)
T TIGR02868       481 LARALLADAPILLLDEPTEHLDAGT  505 (529)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHH
Confidence            9999999999999999999999875

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=3.7e-35  Score=236.31  Aligned_cols=154  Identities=14%  Similarity=0.139  Sum_probs=128.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc-----cccH--Hh----h
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN-----IMHL--FQ----Y   81 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~-----~~~~--~~----~   81 (178)
                      .++|+++||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.+     +...  .+    .
T Consensus        19 ~~il~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~   87 (258)
T PRK11701         19 RKGCRDVSFDLYPGE----VLGIVGESGSGKT-------TLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLL   87 (258)
T ss_pred             ceeeeeeeEEEeCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHh
Confidence            469999999999999    8889999999999       99999999999999999999987     5432  11    2


Q ss_pred             ccceEEecCCCC--CCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHh
Q psy860           82 LSGIGYCPQFNG--INEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        82 ~~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      ++.++|+||++.  +++.+|+.+++.+....... ...+..+.+.++++.+++. ...++.+.+|||||||||+|||||+
T Consensus        88 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~  167 (258)
T PRK11701         88 RTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLV  167 (258)
T ss_pred             hcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHh
Confidence            557999999973  67778999998754322221 1123355678899999997 4788999999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|++|||||||+|||+.++
T Consensus       168 ~~p~llllDEPt~~LD~~~~  187 (258)
T PRK11701        168 THPRLVFMDEPTGGLDVSVQ  187 (258)
T ss_pred             cCCCEEEEcCCcccCCHHHH
Confidence            99999999999999998754

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-35  Score=234.63  Aligned_cols=154  Identities=16%  Similarity=0.159  Sum_probs=128.6

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhc
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYL   82 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~   82 (178)
                      .+++|+++||+|.+||    +.+|+|+||+|||       ||++.+.|+.+     |++|++.++|.++..    ...++
T Consensus        16 ~~~~l~~~sl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~   84 (251)
T PRK14251         16 NYEALHGISLDFEEKE----LTALIGPSGCGKS-------TFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELR   84 (251)
T ss_pred             CeeeeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhh
Confidence            3579999999999999    8889999999999       99999999986     489999999987642    23456


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHh
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      +.++|++|++.+++ .|++||+.+.....+... ....+.+.++++.+++.    ...++.+.+||||||||++|||||+
T Consensus        85 ~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~  163 (251)
T PRK14251         85 KEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA  163 (251)
T ss_pred             ccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence            78999999998875 799999987543333221 12335677889999984    4568899999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|+++||||||+|||+.++
T Consensus       164 ~~p~llllDEP~~~LD~~~~  183 (251)
T PRK14251        164 VRPKVVLLDEPTSALDPISS  183 (251)
T ss_pred             cCCCEEEecCCCccCCHHHH
Confidence            99999999999999999764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-35  Score=233.85  Aligned_cols=154  Identities=16%  Similarity=0.095  Sum_probs=127.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-----ccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-----AAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-----~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++++||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|+     +|+|.++|.++..    ...+++
T Consensus        17 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   85 (252)
T PRK14272         17 KQAVKNVNLDVQRGT----VNALIGPSGCGKT-------TFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRR   85 (252)
T ss_pred             EEeeccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhc
Confidence            479999999999999    8889999999999       9999999998764     8999999988753    235567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++|+||++.+++.+|+.||+.+.....+... .+..+.+.++++.+++.    +..++++.+||||||||++|||||+.
T Consensus        86 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~  165 (252)
T PRK14272         86 RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV  165 (252)
T ss_pred             eeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            89999999999999999999986543332211 12334566677777653    45688899999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       166 ~p~llllDEP~~~LD~~~~  184 (252)
T PRK14272        166 EPEILLMDEPTSALDPAST  184 (252)
T ss_pred             CCCEEEEeCCCccCCHHHH
Confidence            9999999999999999764

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=3.2e-35  Score=257.99  Aligned_cols=154  Identities=19%  Similarity=0.165  Sum_probs=129.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----ccccccccccccccH-----Hhhc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMHL-----FQYL   82 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~~-----~~~~   82 (178)
                      .++|++|||+|+.||    +.+|+|+||||||       ||++.++|+.+|     ++|++.++|.++...     ...+
T Consensus        22 ~~~l~~isl~i~~Ge----~~~iiG~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   90 (529)
T PRK15134         22 RTVVNDVSLQIEAGE----TLALVGESGSGKS-------VTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVR   90 (529)
T ss_pred             eeeeeceEEEEeCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHh
Confidence            479999999999999    8889999999999       999999999886     799999999987542     1233


Q ss_pred             -cceEEecCCCC--CCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHHHHHHHHHH
Q psy860           83 -SGIGYCPQFNG--INEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNKRKLSTAMA  155 (178)
Q Consensus        83 -~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqkQRv~IAra  155 (178)
                       +++||+||++.  +++.+++.+++.+.... .+.+..+..+++.++++.+++.+   ..++++.+|||||||||+||||
T Consensus        91 ~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAra  170 (529)
T PRK15134         91 GNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMA  170 (529)
T ss_pred             cCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHH
Confidence             57999999974  66778999998764332 23333344567889999999975   4689999999999999999999


Q ss_pred             HhCCCCeEEeeCCCCCCCCCCC
Q psy860          156 LIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       156 L~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |+++|++|||||||++||+.++
T Consensus       171 L~~~p~llllDEPt~~LD~~~~  192 (529)
T PRK15134        171 LLTRPELLIADEPTTALDVSVQ  192 (529)
T ss_pred             HhcCCCEEEEcCCCCccCHHHH
Confidence            9999999999999999999764

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-35  Score=233.26  Aligned_cols=153  Identities=16%  Similarity=0.168  Sum_probs=128.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-----ccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-----AAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-----~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+++||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|+     +|++.++|.++..    ...+++
T Consensus        17 ~~il~~~s~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~   85 (251)
T PRK14249         17 HQVLKNINMDFPERQ----ITAIIGPSGCGKS-------TLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRK   85 (251)
T ss_pred             eeEecceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhc
Confidence            469999999999999    7889999999999       9999999999887     6999999987643    235577


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++. |+.||+.+.....+... .+..+.+.++++.+++.    +..++.+.+|||||||||+|||||+.
T Consensus        86 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~  164 (251)
T PRK14249         86 RVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI  164 (251)
T ss_pred             eEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence            89999999988874 99999987654333221 22345567778888874    45788999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       165 ~p~lllLDEPt~~LD~~~~  183 (251)
T PRK14249        165 EPEVILMDEPCSALDPVST  183 (251)
T ss_pred             CCCEEEEeCCCccCCHHHH
Confidence            9999999999999998754

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-35  Score=235.10  Aligned_cols=153  Identities=17%  Similarity=0.136  Sum_probs=127.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----cccccccccccccccH----Hhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMHL----FQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~~----~~~~~   83 (178)
                      .++|+++||+|.+||    +.+|+|+||+|||       ||++.+.|+.+     |++|+|.++|.++...    ..+++
T Consensus        18 ~~~l~~is~~i~~Ge----~~~I~G~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   86 (251)
T PRK14244         18 KQILFDINLDIYKRE----VTAFIGPSGCGKS-------TFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA   86 (251)
T ss_pred             eeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh
Confidence            479999999999999    7889999999999       99999999975     5799999999876432    24567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC--CCChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHh
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP--GVKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      +++|+||++.+++. |+.+|+.+........  ..+..+.+.++++.+++.+    ..++.+.+|||||||||+|||||+
T Consensus        87 ~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  165 (251)
T PRK14244         87 KVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA  165 (251)
T ss_pred             hEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence            89999999988875 9999998754333221  1123456778899999964    457889999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|+++||||||+|||+.++
T Consensus       166 ~~p~llllDEPt~~LD~~~~  185 (251)
T PRK14244        166 VKPTMLLMDEPCSALDPVAT  185 (251)
T ss_pred             cCCCEEEEeCCCccCCHHHH
Confidence            99999999999999999754

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.5e-35  Score=226.87  Aligned_cols=145  Identities=14%  Similarity=0.094  Sum_probs=126.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      .++ +|||+|++||    ..+|+|+||+|||       ||++++.|+.+|++|++.++|.++....  ++.++|++|++.
T Consensus        15 ~l~-~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~i~~~~--~~~~~~~~~~~~   80 (195)
T PRK13541         15 NLF-DLSITFLPSA----ITYIKGANGCGKS-------SLLRMIAGIMQPSSGNIYYKNCNINNIA--KPYCTYIGHNLG   80 (195)
T ss_pred             EEE-EEEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCcccChhh--hhhEEeccCCcC
Confidence            455 4999999999    7889999999999       9999999999999999999998875542  346999999988


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN  173 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD  173 (178)
                      +++..|+.||+.+......     ..+++.++++.+++.+..++.+.+||+|||||++||||++.+|++++|||||+|||
T Consensus        81 ~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD  155 (195)
T PRK13541         81 LKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS  155 (195)
T ss_pred             CCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            8889999999987543321     24467888999999888899999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy860          174 LYNT  177 (178)
Q Consensus       174 ~~~~  177 (178)
                      +.++
T Consensus       156 ~~~~  159 (195)
T PRK13541        156 KENR  159 (195)
T ss_pred             HHHH
Confidence            8764

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-35  Score=236.25  Aligned_cols=153  Identities=17%  Similarity=0.108  Sum_probs=126.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|++|||+|.+||    +.+|+|+||+|||       ||++.+.|+.+     |++|++.++|.++..    ...+++
T Consensus        34 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~  102 (268)
T PRK14248         34 KRAVNDISMDIEKHA----VTALIGPSGCGKS-------TFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRR  102 (268)
T ss_pred             ceeeeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhc
Confidence            469999999999999    8889999999999       99999999754     799999999988743    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++|+||++.+++. |+.||+.+......... ....+.+.++++.+++.    +..++++.+||||||||++|||||+.
T Consensus       103 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~  181 (268)
T PRK14248        103 EIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM  181 (268)
T ss_pred             cEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC
Confidence            89999999988775 99999987543322211 12234577788888884    45688999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       182 ~p~lllLDEPt~~LD~~~~  200 (268)
T PRK14248        182 KPAVLLLDEPASALDPISN  200 (268)
T ss_pred             CCCEEEEcCCCcccCHHHH
Confidence            9999999999999999764

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=5.1e-35  Score=256.68  Aligned_cols=153  Identities=19%  Similarity=0.150  Sum_probs=130.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++|++|||+|+.||    +.+|+|+||+|||       ||++++.|+.+ ++|+|+++|+++...     ..++++++|
T Consensus       299 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~  366 (529)
T PRK15134        299 NVVVKNISFTLRPGE----TLGLVGESGSGKS-------TTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQV  366 (529)
T ss_pred             ceeeecceeEEcCCC----EEEEECCCCCCHH-------HHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEE
Confidence            469999999999999    8889999999999       99999999985 899999999877532     224567999


Q ss_pred             ecCCC--CCCCCCCHHHHHHHHHHhcC--CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           88 CPQFN--GINEHLTAQEMLECFSALRG--IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        88 v~Q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      +||++  .+++.+||.||+.+......  ....+.++++.++++.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus       367 v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  446 (529)
T PRK15134        367 VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSL  446 (529)
T ss_pred             EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCE
Confidence            99997  48888999999987543321  22233446788999999997 578999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      |||||||+|||+.++
T Consensus       447 lllDEPt~~LD~~~~  461 (529)
T PRK15134        447 IILDEPTSSLDKTVQ  461 (529)
T ss_pred             EEeeCCccccCHHHH
Confidence            999999999999764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-35  Score=238.97  Aligned_cols=153  Identities=16%  Similarity=0.119  Sum_probs=127.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||+|.+||    +.+|+|+||+|||       ||++.+.|+.+     |++|+|.++|.++..    ...+++
T Consensus        52 ~~il~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~  120 (286)
T PRK14275         52 FEAVKKVNADILSKY----VTAIIGPSGCGKS-------TFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK  120 (286)
T ss_pred             EEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhh
Confidence            469999999999999    7889999999999       99999999853     499999999987643    124567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++|+||++.+++. |+.||+.+.....+... ...++++.++++.+++.    +..++++.+|||||||||+|||||+.
T Consensus       121 ~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~  199 (286)
T PRK14275        121 KIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV  199 (286)
T ss_pred             cEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence            89999999988874 99999987654433321 22345677888888873    56688999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++|||||||+|||+.++
T Consensus       200 ~p~lllLDEPt~gLD~~~~  218 (286)
T PRK14275        200 EPEILLLDEPTSALDPKAT  218 (286)
T ss_pred             CCCEEEEeCCCccCCHHHH
Confidence            9999999999999998754

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-35  Score=236.02  Aligned_cols=143  Identities=22%  Similarity=0.208  Sum_probs=126.1

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------HhhccceEEecCC
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQYLSGIGYCPQF   91 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~~~~ig~v~Q~   91 (178)
                      ++||..+...    ..||+|++|+|||       |+++++.|+.+|+.|.|.++|+...+.      ...+++||||||+
T Consensus        16 ~a~~~~p~~G----vTAlFG~SGsGKT-------slin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQD   84 (352)
T COG4148          16 DANFTLPARG----ITALFGPSGSGKT-------SLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQD   84 (352)
T ss_pred             EEeccCCCCc----eEEEecCCCCChh-------hHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeec
Confidence            5788888855    7889999999999       999999999999999999999976542      3456789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      ..+||++||+.|+.|.....      .....+++.+.+|+.+..+++|.+|||||||||+|+|||.+.|++|++|||.|+
T Consensus        85 ARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS  158 (352)
T COG4148          85 ARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS  158 (352)
T ss_pred             cccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence            99999999999998753221      345678889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||...+
T Consensus       159 LD~~RK  164 (352)
T COG4148         159 LDLPRK  164 (352)
T ss_pred             cccchh
Confidence            997643

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-35  Score=236.21  Aligned_cols=153  Identities=19%  Similarity=0.153  Sum_probs=128.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||++.+||    +.+|+|+||+|||       ||++.+.|+.+     |++|+|.++|.++..    ...+++
T Consensus        33 ~~il~~vsl~i~~Ge----~~~I~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~  101 (267)
T PRK14237         33 KEAIKGIDMQFEKNK----ITALIGPSGSGKS-------TYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRK  101 (267)
T ss_pred             eeeEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhc
Confidence            579999999999999    8889999999999       99999999975     589999999988742    234577


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++ .|+.||+.+.....+.. ..+..+++.++++.+++.    +..++++.+|||||||||+|||||+.
T Consensus       102 ~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~  180 (267)
T PRK14237        102 HIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV  180 (267)
T ss_pred             ceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            8999999988876 69999998754333321 122345677889999884    45788999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       181 ~p~lllLDEPt~~LD~~~~  199 (267)
T PRK14237        181 KPDILLMDEPASALDPIST  199 (267)
T ss_pred             CCCEEEEeCCcccCCHHHH
Confidence            9999999999999998754

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-35  Score=237.32  Aligned_cols=154  Identities=16%  Similarity=0.061  Sum_probs=130.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc--------ccccccccccccc--HHhhc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ--------AAQNSLLMTNIMH--LFQYL   82 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~--------~g~i~~~g~~~~~--~~~~~   82 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|+        +|++.++|.++..  ..+.+
T Consensus        14 ~~il~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (272)
T PRK13547         14 RAILRDLSLRIEPGR----VTALLGRNGAGKS-------TLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLA   82 (272)
T ss_pred             EeEEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHH
Confidence            479999999999999    7889999999999       9999999999998        8999999988754  33456


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhc----CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh-
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALR----GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI-  157 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~-  157 (178)
                      +.++|+||++.+++.+|+.||+.+.....    +....+..+++.++++.+++.+..++++.+|||||||||+|||||+ 
T Consensus        83 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~  162 (272)
T PRK13547         83 RLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQ  162 (272)
T ss_pred             hhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            67999999987667799999997642111    1111223456788999999998889999999999999999999999 


Q ss_pred             --------CCCCeEEeeCCCCCCCCCCC
Q psy860          158 --------GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 --------~~P~~lllDEPt~gLD~~~~  177 (178)
                              .+|++|||||||+|||+.++
T Consensus       163 ~~~~~~~~~~p~lllLDEPt~~LD~~~~  190 (272)
T PRK13547        163 LWPPHDAAQPPRYLLLDEPTAALDLAHQ  190 (272)
T ss_pred             cccccccCCCCCEEEEcCccccCCHHHH
Confidence                    59999999999999999764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.2e-35  Score=255.02  Aligned_cols=154  Identities=18%  Similarity=0.092  Sum_probs=129.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc--ccccccccccccccH--H-hhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF--QAAQNSLLMTNIMHL--F-QYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~--~~g~i~~~g~~~~~~--~-~~~~~ig~   87 (178)
                      .++|++|||++++||    +.+|+|+||+|||       ||++++.|+.+|  ++|+|.++|.++...  . ..+++++|
T Consensus        14 ~~il~~isl~i~~Ge----~~~liG~nGsGKS-------TLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   82 (500)
T TIGR02633        14 VKALDGIDLEVRPGE----CVGLCGENGAGKS-------TLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVI   82 (500)
T ss_pred             eEeecceEEEEeCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEE
Confidence            469999999999999    8889999999999       999999999886  799999999887542  2 23567999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhc--C--CCCCChhHHHHHHHHHcCCCccc-cCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           88 CPQFNGINEHLTAQEMLECFSALR--G--IPGVKSGPIIDYWIDLLGLTEYR-HRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~--~--~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      +||++.+++.+|+.||+.+.....  .  ....+..+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|++
T Consensus        83 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~l  162 (500)
T TIGR02633        83 IHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARL  162 (500)
T ss_pred             EeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence            999999999999999998753221  1  11223345688899999998654 678999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      |||||||+|||+.++
T Consensus       163 llLDEPt~~LD~~~~  177 (500)
T TIGR02633       163 LILDEPSSSLTEKET  177 (500)
T ss_pred             EEEeCCCCCCCHHHH
Confidence            999999999999764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.1e-35  Score=234.53  Aligned_cols=153  Identities=17%  Similarity=0.170  Sum_probs=128.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|     ++|++.++|.++..    ...+++
T Consensus        20 ~~il~~isl~i~~Ge----~~~l~G~nGsGKS-------TLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   88 (259)
T PRK14260         20 SKAIEGISMDIYRNK----VTAIIGPSGCGKS-------TFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRR   88 (259)
T ss_pred             eEeecceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhh
Confidence            469999999999999    8889999999999       999999999875     48999999987743    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcC-CCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRG-IPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++|+||++.+++ .|++||+.+.....+ .+..+..+.+.++++.+++.    +..++.+.+|||||||||+|||||+.
T Consensus        89 ~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~  167 (259)
T PRK14260         89 QIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI  167 (259)
T ss_pred             heEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            8999999998887 899999987543332 12223345677889999883    46788999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       168 ~p~lllLDEPt~~LD~~~~  186 (259)
T PRK14260        168 KPKVLLMDEPCSALDPIAT  186 (259)
T ss_pred             CCCEEEEcCCCccCCHHHH
Confidence            9999999999999998754

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.7e-35  Score=235.10  Aligned_cols=152  Identities=13%  Similarity=0.106  Sum_probs=126.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----cccccccccccccc----cHHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIM----HLFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~----~~~~~~~   83 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+     |++|++.++|.++.    ...++++
T Consensus        23 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   91 (264)
T PRK14243         23 FLAVKNVWLDIPKNQ----ITAFIGPSGCGKS-------TILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRR   91 (264)
T ss_pred             EEEeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhh
Confidence            479999999999999    8889999999999       99999999865     48999999998764    2345677


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      .++|+||++.+++ .|+.||+.+.....+.. .+..+++.++++.+++.    +..++.+.+|||||||||+|||||+.+
T Consensus        92 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~  169 (264)
T PRK14243         92 RIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ  169 (264)
T ss_pred             hEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            8999999998877 59999998754333221 22345567778888874    356788999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|||||||+|||+.++
T Consensus       170 p~lllLDEPt~~LD~~~~  187 (264)
T PRK14243        170 PEVILMDEPCSALDPIST  187 (264)
T ss_pred             CCEEEEeCCCccCCHHHH
Confidence            999999999999999764

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=232.45  Aligned_cols=153  Identities=17%  Similarity=0.176  Sum_probs=128.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .+++++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|     ++|++.++|.++..    ...+++
T Consensus        16 ~~~l~~i~~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~   84 (250)
T PRK14262         16 KKAVKNVTMKIFKNQ----ITAIIGPSGCGKT-------TLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRK   84 (250)
T ss_pred             ceeEeeeeEeecCCC----EEEEECCCCCCHH-------HHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhh
Confidence            469999999999999    7889999999999       999999999763     89999999987753    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++ .|++||+.+.....+... ....+.+.++++.+++.+    ..++.+.+||||||||++|||||+.
T Consensus        85 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~  163 (250)
T PRK14262         85 KVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV  163 (250)
T ss_pred             hEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC
Confidence            8999999998877 899999987544332221 123445778889999853    4788999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       164 ~p~llllDEP~~~LD~~~~  182 (250)
T PRK14262        164 EPEVILLDEPTSALDPIAT  182 (250)
T ss_pred             CCCEEEEeCCccccCHHHH
Confidence            9999999999999998764

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=7e-35  Score=233.70  Aligned_cols=151  Identities=14%  Similarity=0.129  Sum_probs=128.5

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      .+|++|||+|++||    +.+|+|+||+|||       ||++++.|+.+ .+|++.++|+++..  ..+.++.++|+||+
T Consensus        10 ~~l~~vsl~i~~Ge----i~~l~G~nGsGKS-------TLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~   77 (248)
T PRK03695         10 TRLGPLSAEVRAGE----ILHLVGPNGAGKS-------TLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQ   77 (248)
T ss_pred             ceecceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEeccc
Confidence            38999999999999    7889999999999       99999999986 48999999988754  33455679999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC-------CCCeEE
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG-------DRDDGF  164 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~-------~P~~ll  164 (178)
                      +.+++.+|+.+|+.++... .....+..+++.++++.+++.+..++++.+|||||||||+|||||+.       +|+++|
T Consensus        78 ~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll  156 (248)
T PRK03695         78 QTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL  156 (248)
T ss_pred             CccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEE
Confidence            8888889999999875321 12222335578899999999988899999999999999999999997       779999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+|||+.++
T Consensus       157 lDEPt~~LD~~~~  169 (248)
T PRK03695        157 LDEPMNSLDVAQQ  169 (248)
T ss_pred             EcCCcccCCHHHH
Confidence            9999999999754

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=232.10  Aligned_cols=153  Identities=17%  Similarity=0.136  Sum_probs=127.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----ccccccccccccc---cHHhhccc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIM---HLFQYLSG   84 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~---~~~~~~~~   84 (178)
                      .++|++|||+|.+||    ..+|+|+||+|||       ||++.+.|+.+|     ++|++.++|.++.   ....+++.
T Consensus        16 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~   84 (249)
T PRK14253         16 NQALKSINLPIPARQ----VTALIGPSGCGKS-------TLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIK   84 (249)
T ss_pred             eeeeecceEEecCCC----EEEEECCCCCCHH-------HHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhh
Confidence            469999999999999    7889999999999       999999999875     5999999998764   23456778


Q ss_pred             eEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           85 IGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        85 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++|+||++.+++ .|+.||+.+.....+... ....+++.++++.+++.    +..++.+.+|||||||||+|||||+.+
T Consensus        85 i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  163 (249)
T PRK14253         85 VGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAME  163 (249)
T ss_pred             eeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcC
Confidence            999999998887 899999987543332221 12234567788888874    456788999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |+++||||||+|||+.++
T Consensus       164 p~llllDEP~~~LD~~~~  181 (249)
T PRK14253        164 PDVILMDEPTSALDPIAT  181 (249)
T ss_pred             CCEEEEeCCCccCCHHHH
Confidence            999999999999999754

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=9.7e-35  Score=235.35  Aligned_cols=154  Identities=16%  Similarity=0.088  Sum_probs=130.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~   87 (178)
                      .++++||||+|.+||    +.+|.|+||+|||       ||++.+.|+.+|++|++.++|.++...     ..+++.++|
T Consensus        25 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~   93 (268)
T PRK10419         25 QTVLNNVSLSLKSGE----TVALLGRSGCGKS-------TLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQM   93 (268)
T ss_pred             eeeEeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEE
Confidence            579999999999999    7889999999999       999999999999999999999877542     245678999


Q ss_pred             ecCCC--CCCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           88 CPQFN--GINEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        88 v~Q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      +||++  .+++..|+.+++.+.... ......+..+.+.++++.+++. ...++.+.+||||||||++|||||+.+|++|
T Consensus        94 v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~ll  173 (268)
T PRK10419         94 VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLL  173 (268)
T ss_pred             EEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEE
Confidence            99997  466788999998764322 2222223345688999999997 5789999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       174 lLDEPt~~LD~~~~  187 (268)
T PRK10419        174 ILDEAVSNLDLVLQ  187 (268)
T ss_pred             EEeCCCcccCHHHH
Confidence            99999999998653

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-34  Score=232.96  Aligned_cols=157  Identities=17%  Similarity=0.171  Sum_probs=130.1

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc------ccccc--HHhh
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM------TNIMH--LFQY   81 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g------~~~~~--~~~~   81 (178)
                      +|..++|+||||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|      .++..  ..++
T Consensus        20 ~~~~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~   88 (257)
T PRK14246         20 INDKAILKDITIKIPNNS----IFGIMGPSGSGKS-------TLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL   88 (257)
T ss_pred             cCCceeEeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence            355679999999999999    8889999999999       999999999999997776665      44332  2346


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMAL  156 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL  156 (178)
                      ++.++|+||++.+++.+|+.+|+.+.....+.. ..+.++++.++++.+++.    +..++.+..||+|||||++|||||
T Consensus        89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral  168 (257)
T PRK14246         89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL  168 (257)
T ss_pred             hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            778999999999999999999998764332221 223345678899999995    356789999999999999999999


Q ss_pred             hCCCCeEEeeCCCCCCCCCCC
Q psy860          157 IGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       157 ~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +.+|++++|||||+|||+.++
T Consensus       169 ~~~P~llllDEPt~~LD~~~~  189 (257)
T PRK14246        169 ALKPKVLLMDEPTSMIDIVNS  189 (257)
T ss_pred             HcCCCEEEEcCCCccCCHHHH
Confidence            999999999999999998754

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-34  Score=253.60  Aligned_cols=154  Identities=16%  Similarity=0.125  Sum_probs=129.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-ccccccccccccccc---HHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-FQAAQNSLLMTNIMH---LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~~~g~i~~~g~~~~~---~~~~~~~ig~v   88 (178)
                      .++|+||||+|+.||    +.+|+|+||+|||       ||++.+.|+.+ |++|+|.++|+++..   ....+++++|+
T Consensus       275 ~~vl~~vsl~i~~Ge----~~~l~G~NGsGKS-------TLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v  343 (506)
T PRK13549        275 IKRVDDVSFSLRRGE----ILGIAGLVGAGRT-------ELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMV  343 (506)
T ss_pred             cccccceeeEEcCCc----EEEEeCCCCCCHH-------HHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEe
Confidence            469999999999999    8889999999999       99999999998 599999999987642   22345679999


Q ss_pred             cCCC---CCCCCCCHHHHHHHHHH--hcC---CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           89 PQFN---GINEHLTAQEMLECFSA--LRG---IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        89 ~Q~~---~l~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ||++   .+++.+|+.||+.+...  ...   ....+.++++.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus       344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~  423 (506)
T PRK13549        344 PEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLN  423 (506)
T ss_pred             CcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhC
Confidence            9985   47888999999986421  211   11122345688999999996 578999999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|||||||+|||+.++
T Consensus       424 p~lllLDEPt~~LD~~~~  441 (506)
T PRK13549        424 PKILILDEPTRGIDVGAK  441 (506)
T ss_pred             CCEEEEcCCCCCcCHhHH
Confidence            999999999999999764

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1e-34  Score=232.88  Aligned_cols=154  Identities=14%  Similarity=0.151  Sum_probs=126.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc-----cccH--Hh----h
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN-----IMHL--FQ----Y   81 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~-----~~~~--~~----~   81 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|.+     +...  .+    .
T Consensus        16 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   84 (253)
T TIGR02323        16 GKGCRDVSFDLYPGE----VLGIVGESGSGKS-------TLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLM   84 (253)
T ss_pred             ceEeecceEEEeCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhh
Confidence            468999999999999    8889999999999       99999999999999999999876     4321  11    2


Q ss_pred             ccceEEecCCCC--CCCCCCHHHHHHHHHHhcC-CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHh
Q psy860           82 LSGIGYCPQFNG--INEHLTAQEMLECFSALRG-IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        82 ~~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      +++++|++|++.  +++..++.+++.+...... ....+..+.+.++++.+++. ...++.+.+|||||||||+|||||+
T Consensus        85 ~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~  164 (253)
T TIGR02323        85 RTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV  164 (253)
T ss_pred             hcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHh
Confidence            457999999974  4556788888865322111 11123346788899999997 5789999999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|++|+|||||+|||+.++
T Consensus       165 ~~p~vlllDEP~~~LD~~~~  184 (253)
T TIGR02323       165 TRPRLVFMDEPTGGLDVSVQ  184 (253)
T ss_pred             cCCCEEEEcCCCccCCHHHH
Confidence            99999999999999999764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=5.1e-35  Score=231.26  Aligned_cols=147  Identities=19%  Similarity=0.071  Sum_probs=120.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++++++||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|+++++|.++..  ...+++.++|+||
T Consensus        16 ~~~l~~isl~i~~G~----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   84 (229)
T cd03254          16 KPVLKDINFSIKPGE----TVAIVGPTGAGKT-------TLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ   84 (229)
T ss_pred             CccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecC
Confidence            369999999999999    7889999999999       99999999999999999999987754  3355678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-----------CCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-----------GLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++. |+.||+.++...      ...+.+.++++.+           ++....++.+.+|||||||||+|||||+.+
T Consensus        85 ~~~~~~~-tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~  157 (229)
T cd03254          85 DTFLFSG-TIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD  157 (229)
T ss_pred             Cchhhhh-HHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            9987775 999998764211      1122344444444           344445667899999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |+++||||||+|||+.++
T Consensus       158 p~llllDEP~~~LD~~~~  175 (229)
T cd03254         158 PKILILDEATSNIDTETE  175 (229)
T ss_pred             CCEEEEeCccccCCHHHH
Confidence            999999999999998754

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.4e-35  Score=253.71  Aligned_cols=154  Identities=18%  Similarity=0.119  Sum_probs=129.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-cccccccccccccc---HHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-QAAQNSLLMTNIMH---LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-~~g~i~~~g~~~~~---~~~~~~~ig~v   88 (178)
                      .++|++|||+|+.||    +.+|+|+||+|||       ||++.+.|+.+| ++|+|.++|+++..   ...++++++|+
T Consensus       273 ~~~l~~is~~i~~Ge----~~~l~G~NGsGKS-------TLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v  341 (500)
T TIGR02633       273 RKRVDDVSFSLRRGE----ILGVAGLVGAGRT-------ELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMV  341 (500)
T ss_pred             ccccccceeEEeCCc----EEEEeCCCCCCHH-------HHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEc
Confidence            469999999999999    8889999999999       999999999985 89999999987742   23456789999


Q ss_pred             cCCC---CCCCCCCHHHHHHHHHH--hcC---CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           89 PQFN---GINEHLTAQEMLECFSA--LRG---IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        89 ~Q~~---~l~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ||++   .+++++|+.+++.+...  ...   ....+.++++.++++.+++. ...++++.+|||||||||+|||||+.+
T Consensus       342 ~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~  421 (500)
T TIGR02633       342 PEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTN  421 (500)
T ss_pred             CcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhC
Confidence            9996   58889999999976431  111   11122345688999999997 468999999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|||||||+|||+.++
T Consensus       422 p~lllLDEPt~~LD~~~~  439 (500)
T TIGR02633       422 PRVLILDEPTRGVDVGAK  439 (500)
T ss_pred             CCEEEEcCCCCCcCHhHH
Confidence            999999999999999764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.6e-35  Score=254.13  Aligned_cols=154  Identities=20%  Similarity=0.128  Sum_probs=129.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~   89 (178)
                      ..+++||||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|+|+++|+++..   ....+++++|+|
T Consensus       266 ~~~l~~isl~i~~Ge----~~~iiG~NGsGKS-------TLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~  334 (501)
T PRK11288        266 PGLREPISFSVRAGE----IVGLFGLVGAGRS-------ELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCP  334 (501)
T ss_pred             CCcccceeEEEeCCc----EEEEEcCCCCCHH-------HHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcC
Confidence            458999999999999    8889999999999       99999999999999999999987642   233457899999


Q ss_pred             CCC---CCCCCCCHHHHHHHHHHhc----C--CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           90 QFN---GINEHLTAQEMLECFSALR----G--IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        90 Q~~---~l~~~ltv~e~l~~~~~~~----~--~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      |++   .+++.+|+.|++.+.....    +  ....+.++.+.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus       335 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~  414 (501)
T PRK11288        335 EDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSED  414 (501)
T ss_pred             cCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccC
Confidence            996   4888999999987632111    1  01112235678899999994 788999999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|||||||+|||+.++
T Consensus       415 p~lllLDEPt~~LD~~~~  432 (501)
T PRK11288        415 MKVILLDEPTRGIDVGAK  432 (501)
T ss_pred             CCEEEEcCCCCCCCHhHH
Confidence            999999999999999764

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=232.16  Aligned_cols=153  Identities=18%  Similarity=0.122  Sum_probs=127.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--c---cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--F---QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~---~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+  |   ++|++.++|.++..    ..+.++
T Consensus        19 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   87 (253)
T PRK14261         19 KHALYDITISIPKNR----VTALIGPSGCGKS-------TLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRR   87 (253)
T ss_pred             eeeeeeeEEEECCCc----EEEEECCCCCCHH-------HHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhc
Confidence            469999999999999    7889999999999       99999999864  3   48999999988753    245567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++|+||++.+++. |++||+.+.....+.. ..+.++.+.++++.+++.    +..++.+.+||+|||||++|||||+.
T Consensus        88 ~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~  166 (253)
T PRK14261         88 KIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV  166 (253)
T ss_pred             eEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc
Confidence            89999999988874 9999998765443321 122345677888888874    34688999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       167 ~p~lllLDEP~~gLD~~~~  185 (253)
T PRK14261        167 NPEVILMDEPCSALDPIAT  185 (253)
T ss_pred             CCCEEEEeCCcccCCHHHH
Confidence            9999999999999999764

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-34  Score=233.22  Aligned_cols=154  Identities=15%  Similarity=0.089  Sum_probs=129.2

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhh
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQY   81 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~   81 (178)
                      |..++|+++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|     ++|+|.++|.++..    ...+
T Consensus        19 ~~~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~   87 (261)
T PRK14263         19 GNFMAVRDSHVPIRKNE----ITGFIGPSGCGKS-------TVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV   87 (261)
T ss_pred             CCEEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcccccccCCCCceEEEECCEeccccccchHhh
Confidence            33579999999999999    8889999999999       999999999876     79999999998743    2345


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHh
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      ++.++|+||++.++ .+|+.||+.+........ .+..+.+.++++.+++.+    ..++++.+|||||+||++|||||+
T Consensus        88 ~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~  165 (261)
T PRK14263         88 RRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA  165 (261)
T ss_pred             hhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            67899999999877 699999998765433221 233457888999999853    446788999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|+++||||||+|||+.++
T Consensus       166 ~~p~llllDEPtsgLD~~~~  185 (261)
T PRK14263        166 TEPEVLLLDEPCSALDPIAT  185 (261)
T ss_pred             cCCCEEEEeCCCccCCHHHH
Confidence            99999999999999999764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=9.4e-35  Score=229.76  Aligned_cols=148  Identities=19%  Similarity=0.126  Sum_probs=123.6

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEe
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC   88 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v   88 (178)
                      ++|..++|+|+||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+++++|.++...          
T Consensus        31 ~~~~~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~----------   89 (224)
T cd03220          31 EVGEFWALKDVSFEVPRGE----RIGLIGRNGAGKS-------TLLRLLAGIYPPDSGTVTVRGRVSSLL----------   89 (224)
T ss_pred             hcCCeEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence            3456789999999999999    7889999999999       999999999999999999998764211          


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      .+...+++.+|+.||+.+.....+....+.++++.++++.+++.+..++.+.+|||||||||+|||||+.+|+++|||||
T Consensus        90 ~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP  169 (224)
T cd03220          90 GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV  169 (224)
T ss_pred             cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            11234557789999998765443333233345678889999999888999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       170 ~~gLD~~~~  178 (224)
T cd03220         170 LAVGDAAFQ  178 (224)
T ss_pred             cccCCHHHH
Confidence            999999754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-34  Score=235.27  Aligned_cols=153  Identities=15%  Similarity=0.123  Sum_probs=127.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc---HHhhccc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH---LFQYLSG   84 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~---~~~~~~~   84 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|     ++|+|.++|.++..   ...++++
T Consensus        34 ~~il~~vs~~i~~Ge----~~~I~G~nGsGKS-------TLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~  102 (276)
T PRK14271         34 KTVLDQVSMGFPARA----VTSLMGPTGSGKT-------TFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRR  102 (276)
T ss_pred             EEEeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhh
Confidence            479999999999999    8889999999999       999999999875     79999999988753   2356778


Q ss_pred             eEEecCCCCCCCCCCHHHHHHHHHHhcC-CCCCChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           85 IGYCPQFNGINEHLTAQEMLECFSALRG-IPGVKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        85 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++|+||++.+++ .|+.+|+.+...... ....+..+.+.++++.+++.+    ..++.+.+|||||||||+|||||+.+
T Consensus       103 i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~  181 (276)
T PRK14271        103 VGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVN  181 (276)
T ss_pred             eEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence            999999998887 899999987543222 122223345677889999863    45788999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |+++||||||+|||+.++
T Consensus       182 p~lllLDEPt~~LD~~~~  199 (276)
T PRK14271        182 PEVLLLDEPTSALDPTTT  199 (276)
T ss_pred             CCEEEEcCCcccCCHHHH
Confidence            999999999999998764

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=230.73  Aligned_cols=153  Identities=18%  Similarity=0.158  Sum_probs=126.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--c---cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--F---QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~---~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+++||+|.+||    +.+|+|+||+|||       ||++.+.|+.+  |   ++|+|.++|.++..    ...+++
T Consensus        18 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   86 (252)
T PRK14255         18 FEALKGIDLDFNQNE----ITALIGPSGCGKS-------TYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRK   86 (252)
T ss_pred             eeEEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcC
Confidence            469999999999999    8889999999999       99999999864  4   58999999987742    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++ .|+.+|+.+.....+.... ...+.+.++++.+++.    +..++.+.+||+||||||+|||||+.
T Consensus        87 ~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~  165 (252)
T PRK14255         87 QVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV  165 (252)
T ss_pred             eEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc
Confidence            8999999998887 6999999875443332221 1234566778888763    45688999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       166 ~p~llllDEPt~~LD~~~~  184 (252)
T PRK14255        166 KPDVILLDEPTSALDPISS  184 (252)
T ss_pred             CCCEEEEcCCCccCCHHHH
Confidence            9999999999999999764

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=234.48  Aligned_cols=153  Identities=17%  Similarity=0.146  Sum_probs=125.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+|+||+|++||    +.+|+|+||+|||       ||++.+.|+.+     |++|+|.++|.++..    ...+++
T Consensus        37 ~~il~~vsl~i~~Ge----~~~I~G~nGsGKS-------TLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~  105 (271)
T PRK14238         37 DHALKNINLDIHENE----VTAIIGPSGCGKS-------TYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRT  105 (271)
T ss_pred             cceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhh
Confidence            469999999999999    8889999999999       99999999986     699999999987642    335567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcC----CCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLG----LTEYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~----L~~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++ .|+.||+.+.......... ...+.+.++++.++    +.+..++++.+|||||||||+|||||+.
T Consensus       106 ~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~  184 (271)
T PRK14238        106 NVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI  184 (271)
T ss_pred             hEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc
Confidence            8999999998876 5999999875433322211 12344567777775    3456688999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       185 ~p~lllLDEPt~~LD~~~~  203 (271)
T PRK14238        185 EPDVILMDEPTSALDPIST  203 (271)
T ss_pred             CCCEEEEeCCCCcCCHHHH
Confidence            9999999999999999764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=252.95  Aligned_cols=153  Identities=17%  Similarity=0.221  Sum_probs=129.3

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEecC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCPQ   90 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~Q   90 (178)
                      +++++|||+|+.||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|+++...   ...+++++|+||
T Consensus       266 ~~l~~vsl~i~~Ge----~~~liG~NGsGKS-------TLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q  334 (501)
T PRK10762        266 PGVNDVSFTLRKGE----ILGVSGLMGAGRT-------ELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISE  334 (501)
T ss_pred             CCcccceEEEcCCc----EEEEecCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecC
Confidence            46999999999999    7889999999999       999999999999999999999876432   234568999999


Q ss_pred             CC---CCCCCCCHHHHHHHHHH--hc---C-CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860           91 FN---GINEHLTAQEMLECFSA--LR---G-IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        91 ~~---~l~~~ltv~e~l~~~~~--~~---~-~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      ++   .+++.+|+.+++.+...  ..   + ....+.++.+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus       335 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p  414 (501)
T PRK10762        335 DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRP  414 (501)
T ss_pred             ccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCC
Confidence            96   57889999999986421  11   1 11122345688999999995 6789999999999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~~  177 (178)
                      ++|||||||+|||+.++
T Consensus       415 ~lllLDEPt~~LD~~~~  431 (501)
T PRK10762        415 KVLILDEPTRGVDVGAK  431 (501)
T ss_pred             CEEEEcCCCCCCCHhHH
Confidence            99999999999999764

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=2.4e-35  Score=234.40  Aligned_cols=151  Identities=15%  Similarity=0.085  Sum_probs=120.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ...+++.++|+||
T Consensus        15 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   83 (237)
T cd03252          15 PVILDNISLRIKPGE----VVGIVGRSGSGKS-------TLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQ   83 (237)
T ss_pred             ccceeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcC
Confidence            469999999999999    8889999999999       99999999999999999999987643  3345678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhH-----HHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGP-----IIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      ++.++ +.|+.||+.+...  .....+..+     .+.++++.+  ++....++++.+|||||||||+|||||+.+|+++
T Consensus        84 ~~~~~-~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  160 (237)
T cd03252          84 ENVLF-NRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL  160 (237)
T ss_pred             Cchhc-cchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence            98776 4799999976321  111001011     112334444  4555567889999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       161 llDEP~~~LD~~~~  174 (237)
T cd03252         161 IFDEATSALDYESE  174 (237)
T ss_pred             EEeCCcccCCHHHH
Confidence            99999999999764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-35  Score=236.84  Aligned_cols=153  Identities=16%  Similarity=0.242  Sum_probs=124.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+||||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++... ..++.++|+||++
T Consensus        20 ~~il~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~i~~v~q~~   87 (272)
T PRK15056         20 HTALRDASFTVPGGS----IAALVGVNGSGKS-------TLFKALMGFVRLASGKISILGQPTRQA-LQKNLVAYVPQSE   87 (272)
T ss_pred             cEEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEhHHh-hccceEEEecccc
Confidence            469999999999999    7889999999999       999999999999999999999876421 1234699999997


Q ss_pred             CCC--CCCCHHHHHHHHHH--hc--CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           93 GIN--EHLTAQEMLECFSA--LR--GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        93 ~l~--~~ltv~e~l~~~~~--~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      .+.  ...++.+++.+...  ..  ........+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++||
T Consensus        88 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD  167 (272)
T PRK15056         88 EVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD  167 (272)
T ss_pred             ccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            653  23467777754211  00  1111223456788899999998889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       168 EPt~~LD~~~~  178 (272)
T PRK15056        168 EPFTGVDVKTE  178 (272)
T ss_pred             CCCccCCHHHH
Confidence            99999999764

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=227.19  Aligned_cols=161  Identities=18%  Similarity=0.225  Sum_probs=147.5

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhhc
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYL   82 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~   82 (178)
                      ..++.+|.+.++++||++|++|.    +++++||||+|||       ||+..+.++.+.++|+++++|.++...  .++.
T Consensus         6 nv~K~y~~~~vl~~isl~i~~g~----iTs~IGPNGAGKS-------TLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA   74 (252)
T COG4604           6 NVSKSYGTKVVLDDVSLDIPKGG----ITSIIGPNGAGKS-------TLLSMMSRLLKKDSGEITIDGLELTSTPSKELA   74 (252)
T ss_pred             hhhHhhCCEEeeccceeeecCCc----eeEEECCCCccHH-------HHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence            34567788899999999999999    7779999999999       999999999999999999999998763  5677


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHH--HHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLEC--FSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~--~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      +.++.+-|+..+...+||+|.+.|  |++-.|....++++.++++++.++|.+..|++..+||||||||..||+.++++.
T Consensus        75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT  154 (252)
T COG4604          75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT  154 (252)
T ss_pred             HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccC
Confidence            889999999999999999999988  455567777888999999999999999999999999999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~  176 (178)
                      ++++||||.+.||.++
T Consensus       155 dyvlLDEPLNNLDmkH  170 (252)
T COG4604         155 DYVLLDEPLNNLDMKH  170 (252)
T ss_pred             cEEEecCcccccchHH
Confidence            9999999999999864

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-34  Score=231.86  Aligned_cols=153  Identities=14%  Similarity=0.172  Sum_probs=127.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-----ccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-----AAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-----~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||++++||    +.+|+|+||+|||       ||++.+.|+.+|+     +|++.++|.++..    ...+++
T Consensus        20 ~~il~~is~~i~~Ge----~~~I~G~nGsGKS-------TLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~   88 (261)
T PRK14258         20 QKILEGVSMEIYQSK----VTAIIGPSGCGKS-------TFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRR   88 (261)
T ss_pred             eeEeeceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhc
Confidence            469999999999999    8889999999999       9999999999885     7899999987632    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++ .|+.||+.+.....+. +..+..+++.++++.+++.    +..++.+.+|||||||||+|||||+.
T Consensus        89 ~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~  167 (261)
T PRK14258         89 QVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV  167 (261)
T ss_pred             cEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            8999999988877 8999999875433332 1122345678889999874    35688999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       168 ~p~vllLDEP~~~LD~~~~  186 (261)
T PRK14258        168 KPKVLLMDEPCFGLDPIAS  186 (261)
T ss_pred             CCCEEEEeCCCccCCHHHH
Confidence            9999999999999998754

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-34  Score=233.30  Aligned_cols=153  Identities=18%  Similarity=0.106  Sum_probs=128.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+|+||+|++||    +.+|+|+||+|||       ||++.+.|+.+     |++|++.++|.++..    ...+++
T Consensus        38 ~~il~~vs~~i~~Ge----~~~I~G~nGsGKS-------TLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~  106 (272)
T PRK14236         38 KQALFDISMRIPKNR----VTAFIGPSGCGKS-------TLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR  106 (272)
T ss_pred             eeEeeeEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhc
Confidence            469999999999999    7889999999999       99999999976     489999999988743    235577


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|+||++.+++. |+.||+.+.....+... ....+.+.++++.+++.    +..++.+.+|||||||||+|||||+.
T Consensus       107 ~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~  185 (272)
T PRK14236        107 RVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI  185 (272)
T ss_pred             cEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC
Confidence            89999999988875 99999987543333211 12235577888999885    35678899999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       186 ~p~lllLDEPt~gLD~~~~  204 (272)
T PRK14236        186 EPEVLLLDEPTSALDPIST  204 (272)
T ss_pred             CCCEEEEeCCcccCCHHHH
Confidence            9999999999999999764

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=1.5e-34  Score=227.26  Aligned_cols=152  Identities=18%  Similarity=0.153  Sum_probs=122.5

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----   78 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----   78 (178)
                      |.|..+   .+++++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|+++...     
T Consensus         8 ~~~~~~---~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~   73 (218)
T cd03290           8 FSWGSG---LATLSNINIRIPTGQ----LTMIVGQVGCGKS-------SLLLAILGEMQTLEGKVHWSNKNESEPSFEAT   73 (218)
T ss_pred             EecCCC---CcceeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCCeEEECCccccccccccc
Confidence            455433   379999999999999    7889999999999       999999999999999999999876432     


Q ss_pred             -HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHH
Q psy860           79 -FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGN  146 (178)
Q Consensus        79 -~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGq  146 (178)
                       ...++.++|++|++.++ ..|++||+.+...   .    ..+.+.++++.+++.+.           .++++.+|||||
T Consensus        74 ~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~  145 (218)
T cd03290          74 RSRNRYSVAYAAQKPWLL-NATVEENITFGSP---F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ  145 (218)
T ss_pred             chhhcceEEEEcCCCccc-cccHHHHHhhcCc---C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence             12456799999999877 5799999876321   1    12234455666665432           346789999999


Q ss_pred             HHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          147 KRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       147 kQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ||||+|||||+.+|+++||||||+|||+.++
T Consensus       146 ~qrv~laral~~~p~illlDEPt~~LD~~~~  176 (218)
T cd03290         146 RQRICVARALYQNTNIVFLDDPFSALDIHLS  176 (218)
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCccccCHHHH
Confidence            9999999999999999999999999999753

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=8.2e-35  Score=230.77  Aligned_cols=150  Identities=19%  Similarity=0.118  Sum_probs=122.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      ++++++||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|+++++|.++..  ...+++.++|+||+
T Consensus        16 ~~l~~i~~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   84 (234)
T cd03251          16 PVLRDISLDIPAGE----TVALVGPSGSGKS-------TLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQD   84 (234)
T ss_pred             cceeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCC
Confidence            68999999999999    7889999999999       99999999999999999999987653  33556789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhH-----HHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGP-----IIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      +.+++ .|+.||+.++....  ...+..+     .+.++++.+  ++.+..++++.+||+||||||+|||||+.+|++++
T Consensus        85 ~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  161 (234)
T cd03251          85 VFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI  161 (234)
T ss_pred             Ceecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            88775 69999997642211  1001111     133455555  66667788899999999999999999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+|||+.++
T Consensus       162 LDEP~~~LD~~~~  174 (234)
T cd03251         162 LDEATSALDTESE  174 (234)
T ss_pred             EeCccccCCHHHH
Confidence            9999999999764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-34  Score=239.01  Aligned_cols=153  Identities=16%  Similarity=0.145  Sum_probs=127.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+||||+|++||    ..+|+|+||+|||       ||++.+.|+.+     |++|.|.++|.++..    ...+++
T Consensus        95 ~~~L~~is~~I~~Ge----~v~IvG~~GsGKS-------TLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~  163 (329)
T PRK14257         95 KHVLHDLNLDIKRNK----VTAFIGPSGCGKS-------TFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRT  163 (329)
T ss_pred             ceeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhc
Confidence            469999999999999    8889999999999       99999999975     579999999998853    245678


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCC-hhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVK-SGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++||||++.++ +.|++||+.+.....+....+ ..+.+.++++.+++.    ...++++.+|||||||||+|||||+.
T Consensus       164 ~i~~v~q~~~~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~  242 (329)
T PRK14257        164 RIGMVFQKPTPF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL  242 (329)
T ss_pred             cEEEEecCCccC-CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh
Confidence            899999999877 479999998765433322222 223467788888874    35678899999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++|||||||++||+.+.
T Consensus       243 ~p~IlLLDEPts~LD~~~~  261 (329)
T PRK14257        243 EPEVLLMDEPTSALDPIAT  261 (329)
T ss_pred             CCCEEEEeCCcccCCHHHH
Confidence            9999999999999998653

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=4.3e-35  Score=231.42  Aligned_cols=150  Identities=17%  Similarity=0.058  Sum_probs=124.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      ++|++|||+|.+||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|+++..  ....++.++|+||+
T Consensus        28 ~~l~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   96 (226)
T cd03248          28 LVLQDVSFTLHPGE----VTALVGPSGSGKS-------TVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQE   96 (226)
T ss_pred             ccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecc
Confidence            69999999999999    8889999999999       99999999999999999999987653  23456789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCC-----hhHHHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVK-----SGPIIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~-----~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      +.+++ .|++||+.+.....  ...+     ....+.++++.+  ++.+..++++.+|||||||||+|||||+.+|+++|
T Consensus        97 ~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll  173 (226)
T cd03248          97 PVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI  173 (226)
T ss_pred             cHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            88765 69999987532111  1001     111245678888  78877889999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+|||+.++
T Consensus       174 lDEPt~~LD~~~~  186 (226)
T cd03248         174 LDEATSALDAESE  186 (226)
T ss_pred             EeCCcccCCHHHH
Confidence            9999999999764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-34  Score=232.54  Aligned_cols=152  Identities=15%  Similarity=0.112  Sum_probs=125.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++++.|+.+|     ++|++.++|.++..    ...+++
T Consensus        33 ~~~l~~vs~~i~~Ge----~~~IiG~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~  101 (274)
T PRK14265         33 FLALVDVHLKIPAKK----IIAFIGPSGCGKS-------TLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRR  101 (274)
T ss_pred             eEEEeeeeeEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhh
Confidence            469999999999999    7889999999999       999999998753     68999999987742    234567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      +++|+||++.+++ .|+.+|+.+.....+.. ....+.+.++++.+++.    +..++++.+|||||||||+|||||+.+
T Consensus       102 ~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~  179 (274)
T PRK14265        102 QVGMVFQRPNPFP-KSIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMK  179 (274)
T ss_pred             cEEEEccCCcccc-ccHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhC
Confidence            8999999988876 49999998754332221 12234566778888863    456889999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|||||||+|||+.++
T Consensus       180 p~lllLDEPt~~LD~~~~  197 (274)
T PRK14265        180 PDVLLMDEPCSALDPIST  197 (274)
T ss_pred             CCEEEEeCCcccCCHHHH
Confidence            999999999999998754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=4.2e-34  Score=229.18  Aligned_cols=146  Identities=13%  Similarity=0.130  Sum_probs=124.4

Q ss_pred             hhhhhccCccccccchhhhcc-----HHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH
Q psy860            4 FQYLSGIGYCPQFNGINEHLT-----AQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL   78 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~-----~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~   78 (178)
                      |.|+...   ..+++++++++     .||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.     
T Consensus         1 ~~y~~~~---~~~~~~~l~~~~~~i~~Ge----~~~i~G~NGsGKS-------TLlk~L~G~~~p~~G~i~~~g~-----   61 (246)
T cd03237           1 YTYPTMK---KTLGEFTLEVEGGSISESE----VIGILGPNGIGKT-------TFIKMLAGVLKPDEGDIEIELD-----   61 (246)
T ss_pred             CCCcccc---cccCcEEEEEecCCcCCCC----EEEEECCCCCCHH-------HHHHHHhCCCcCCCCeEEECCc-----
Confidence            5676444   68888888886     678    7889999999999       9999999999999999988774     


Q ss_pred             HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           79 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        79 ~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                           .++|+||++..++..||.|++.++.....    .....+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus        62 -----~i~~~~q~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~  132 (246)
T cd03237          62 -----TVSYKPQYIKADYEGTVRDLLSSITKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK  132 (246)
T ss_pred             -----eEEEecccccCCCCCCHHHHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence                 59999999887788999999876432211    112346788999999988999999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||++||+.++
T Consensus       133 ~p~llllDEPt~~LD~~~~  151 (246)
T cd03237         133 DADIYLLDEPSAYLDVEQR  151 (246)
T ss_pred             CCCEEEEeCCcccCCHHHH
Confidence            9999999999999999764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.1e-34  Score=255.38  Aligned_cols=146  Identities=16%  Similarity=0.060  Sum_probs=121.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|++||    ..+|+|+||+|||       ||++.+.|+. |++|+|.++|.++.+  ..++|+.|+||||
T Consensus       363 ~~vL~~i~l~i~~G~----~vaIvG~SGsGKS-------TL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q  430 (588)
T PRK11174        363 KTLAGPLNFTLPAGQ----RIALVGPSGAGKT-------SLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQ  430 (588)
T ss_pred             CeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecC
Confidence            479999999999999    8889999999999       9999999999 899999999999876  4578889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-------cccC----cCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-------YRHR----VSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~~~~----~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+|. -|++||+.++.     + ....+++.++++..++.+       ..|.    .-..||||||||++|||||+.+
T Consensus       431 ~~~LF~-~TI~eNI~~g~-----~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~  503 (588)
T PRK11174        431 NPQLPH-GTLRDNVLLGN-----P-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP  503 (588)
T ss_pred             CCcCCC-cCHHHHhhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence            999875 59999998741     1 122445666666655432       2233    3456999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|+||||||+||+.+.
T Consensus       504 ~~IliLDE~TSaLD~~te  521 (588)
T PRK11174        504 CQLLLLDEPTASLDAHSE  521 (588)
T ss_pred             CCEEEEeCCccCCCHHHH
Confidence            999999999999998753

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=3.4e-34  Score=225.47  Aligned_cols=146  Identities=19%  Similarity=0.138  Sum_probs=122.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+++++|.++..  ..++++.++|+||
T Consensus        17 ~~~l~~i~~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   85 (221)
T cd03244          17 PPVLKNISFSIKPGE----KVGIVGRTGSGKS-------SLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQ   85 (221)
T ss_pred             cccccceEEEECCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECC
Confidence            369999999999999    7889999999999       99999999999999999999987753  3456778999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-----------cCcCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-----------HRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++ .|++||+.++.   .    ...+++.++++.+++.+..           ++.+.+||+||||||+|||||+.+
T Consensus        86 ~~~l~~-~tv~enl~~~~---~----~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~  157 (221)
T cd03244          86 DPVLFS-GTIRSNLDPFG---E----YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK  157 (221)
T ss_pred             CCcccc-chHHHHhCcCC---C----CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence            988765 59999986431   1    1134456666777665443           468899999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++++|||||+|||+.++
T Consensus       158 p~llllDEP~~~LD~~~~  175 (221)
T cd03244         158 SKILVLDEATASVDPETD  175 (221)
T ss_pred             CCEEEEeCccccCCHHHH
Confidence            999999999999999764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.4e-34  Score=258.14  Aligned_cols=153  Identities=17%  Similarity=0.109  Sum_probs=128.6

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |+|+..  ..++|+||||+|++||    ..+|+|+||||||       ||++.+.|+.+|++|+|.++|.++.+  ...+
T Consensus       459 f~Y~~~--~~~vL~~isl~i~~Ge----~vaIvG~sGsGKS-------TLlklL~gl~~p~~G~I~idg~~i~~~~~~~l  525 (686)
T TIGR03797       459 FRYRPD--GPLILDDVSLQIEPGE----FVAIVGPSGSGKS-------TLLRLLLGFETPESGSVFYDGQDLAGLDVQAV  525 (686)
T ss_pred             EEcCCC--CccceeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCEEEECCEEcCcCCHHHH
Confidence            667432  1479999999999999    8889999999999       99999999999999999999999875  5678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.+|. -|++||+.++.     +  ...+++.++++..++.+..++           .-..||||||||+
T Consensus       526 r~~i~~v~Q~~~lf~-gTI~eNi~~~~-----~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi  597 (686)
T TIGR03797       526 RRQLGVVLQNGRLMS-GSIFENIAGGA-----P--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL  597 (686)
T ss_pred             HhccEEEccCCccCc-ccHHHHHhcCC-----C--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            999999999999875 59999998631     1  234567778888877643322           2356999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+.+|++|+||||||+||+.+.
T Consensus       598 alARAll~~p~iLiLDEpTS~LD~~te  624 (686)
T TIGR03797       598 LIARALVRKPRILLFDEATSALDNRTQ  624 (686)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence            999999999999999999999998753

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.8e-34  Score=248.02  Aligned_cols=162  Identities=16%  Similarity=0.168  Sum_probs=134.9

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc----cccccccccccccH--
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ----AAQNSLLMTNIMHL--   78 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~----~g~i~~~g~~~~~~--   78 (178)
                      .|....+..++++||||+|.+||    ..+|+|.+|||||       |+...+.|++++.    +|+|.++|+++...  
T Consensus        14 ~~~~~~~~~~~v~~vsf~v~~GE----~lgIvGESGsGKS-------t~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~   82 (539)
T COG1123          14 EFATDGGRVPAVRDVSFEVEPGE----ILGIVGESGSGKS-------TLALALMGLLPEGGRITSGEVILDGRDLLGLSE   82 (539)
T ss_pred             EEecCCcceeeeecceEEecCCc----EEEEEcCCCCCHH-------HHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence            34444444689999999999999    6779999999999       9999999998776    89999999876543  


Q ss_pred             ---Hhhc-cceEEecCCC--CCCCCCCHHHHHHHHHHhcC-CCCCChhHHHHHHHHHcCCCcccc--CcCCCCChHHHHH
Q psy860           79 ---FQYL-SGIGYCPQFN--GINEHLTAQEMLECFSALRG-IPGVKSGPIIDYWIDLLGLTEYRH--RVSGRYSGGNKRK  149 (178)
Q Consensus        79 ---~~~~-~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGqkQR  149 (178)
                         .++| +.|+|+||+|  .+.|-+|+.+.+.-.....+ ....+.++++.++|+.++|++...  ++|++||||||||
T Consensus        83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR  162 (539)
T COG1123          83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR  162 (539)
T ss_pred             HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence               2333 6799999997  47888999888876555443 345667788999999999986554  4999999999999


Q ss_pred             HHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          150 LSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       150 v~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |.||+||+.+|++||+||||++||+..+
T Consensus       163 v~iAmALa~~P~LLIaDEPTTaLDvt~q  190 (539)
T COG1123         163 VMIAMALALKPKLLIADEPTTALDVTTQ  190 (539)
T ss_pred             HHHHHHHhCCCCEEEECCCccccCHHHH
Confidence            9999999999999999999999998654

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-34  Score=228.00  Aligned_cols=153  Identities=13%  Similarity=0.097  Sum_probs=127.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|+|+||+|..||    ..+|+|+||+|||       ||++.+.|+.+     |++|++.++|.++..    ..+.++
T Consensus        16 ~~~l~~~s~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~   84 (250)
T PRK14266         16 AHILKNVNLDIPKNS----VTALIGPSGCGKS-------TFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRK   84 (250)
T ss_pred             eEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhh
Confidence            469999999999999    7889999999999       99999999853     489999999988743    335677


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +++|+||++.+++. |+.+|+.+.....+.. .....+++.++++.+++.    +..++.+.+||+|||||++|||||+.
T Consensus        85 ~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~  163 (250)
T PRK14266         85 KVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV  163 (250)
T ss_pred             heEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence            89999999988874 9999998754333221 122345678889999884    35688899999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       164 ~p~llllDEP~~gLD~~~~  182 (250)
T PRK14266        164 SPEVILMDEPCSALDPIST  182 (250)
T ss_pred             CCCEEEEcCCCccCCHHHH
Confidence            9999999999999999754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=5.9e-34  Score=249.10  Aligned_cols=153  Identities=17%  Similarity=0.205  Sum_probs=128.0

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--H-hhccceEEecC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--F-QYLSGIGYCPQ   90 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~-~~~~~ig~v~Q   90 (178)
                      .+|++|||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...  . ..+++++|+||
T Consensus       277 ~~l~~isl~i~~Ge----~~~l~G~NGsGKS-------TLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q  345 (510)
T PRK15439        277 EGFRNISLEVRAGE----ILGLAGVVGAGRT-------ELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPE  345 (510)
T ss_pred             CCccceeEEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCC
Confidence            36999999999999    8889999999999       999999999999999999999877532  1 23568999999


Q ss_pred             CC---CCCCCCCHHHHHHHHHH--hc-CCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           91 FN---GINEHLTAQEMLECFSA--LR-GIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        91 ~~---~l~~~ltv~e~l~~~~~--~~-~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      ++   .+++.+|+.+++.....  .. .....+.++.++++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus       346 ~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lL  425 (510)
T PRK15439        346 DRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLL  425 (510)
T ss_pred             ChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEE
Confidence            84   58888999999864311  11 111122345688999999997 7889999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       426 lLDEPt~gLD~~~~  439 (510)
T PRK15439        426 IVDEPTRGVDVSAR  439 (510)
T ss_pred             EECCCCcCcChhHH
Confidence            99999999999865

>KOG0058|consensus

Probab=100.00  E-value=4.2e-34  Score=251.07  Aligned_cols=154  Identities=16%  Similarity=0.127  Sum_probs=125.7

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~   81 (178)
                      |.|+.+-. .++|+|+||+|++||    .+|++||||+|||       |+...+.++..|++|+|.+||.++.++  ..+
T Consensus       473 FaYP~Rp~-~~Vlk~lsfti~pGe----~vALVGPSGsGKS-------TiasLL~rfY~PtsG~IllDG~~i~~~~~~~l  540 (716)
T KOG0058|consen  473 FAYPTRPD-VPVLKNLSFTIRPGE----VVALVGPSGSGKS-------TIASLLLRFYDPTSGRILLDGVPISDINHKYL  540 (716)
T ss_pred             eecCCCCC-chhhcCceeeeCCCC----EEEEECCCCCCHH-------HHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence            78877753 489999999999999    7889999999999       888999999999999999999999875  457


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-------CCCcccc----CcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-------GLTEYRH----RVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~L~~~~~----~~~~~LSgGqkQRv  150 (178)
                      |++||+|-|+|.+|. -|++||+.+...      ....+++.++.+.-       ++++.-|    .+-.+||||||||+
T Consensus       541 r~~Ig~V~QEPvLFs-~sI~eNI~YG~~------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI  613 (716)
T KOG0058|consen  541 RRKIGLVGQEPVLFS-GSIRENIAYGLD------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI  613 (716)
T ss_pred             HHHeeeeeccceeec-ccHHHHHhcCCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH
Confidence            899999999999864 599999987532      12233344333332       2333333    34458999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.||++|||||.||+||..+
T Consensus       614 AIARALlr~P~VLILDEATSALDaeS  639 (716)
T KOG0058|consen  614 AIARALLRNPRVLILDEATSALDAES  639 (716)
T ss_pred             HHHHHHhcCCCEEEEechhhhcchhh
Confidence            99999999999999999999999875

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=6.1e-34  Score=255.10  Aligned_cols=153  Identities=21%  Similarity=0.175  Sum_probs=129.7

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc--cccccccccccccHHhhccceEEec
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ--AAQNSLLMTNIMHLFQYLSGIGYCP   89 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~--~g~i~~~g~~~~~~~~~~~~ig~v~   89 (178)
                      ..++|+|||+++++||    +.+|+|+||+|||       ||++.+.|..+|+  +|+|.++|+++..  +.+++++||+
T Consensus        80 ~~~iL~~vs~~i~~Ge----~~aI~GpnGaGKS-------TLL~iLaG~~~~~~~sG~I~inG~~~~~--~~~~~i~yv~  146 (659)
T PLN03211         80 ERTILNGVTGMASPGE----ILAVLGPSGSGKS-------TLLNALAGRIQGNNFTGTILANNRKPTK--QILKRTGFVT  146 (659)
T ss_pred             CCeeeeCCEEEEECCE----EEEEECCCCCCHH-------HHHHHHhCCCCCCceeEEEEECCEECch--hhccceEEEC
Confidence            3579999999999999    7889999999999       9999999998875  8999999987642  3456799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcC---CCCCChhHHHHHHHHHcCCCcccc-----CcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRG---IPGVKSGPIIDYWIDLLGLTEYRH-----RVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      |++.+++.+||+|++.+....+.   ...++..++++++++.+||.+..|     +.+..|||||||||+||++|+.+|+
T Consensus       147 Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~  226 (659)
T PLN03211        147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS  226 (659)
T ss_pred             cccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence            99999999999999998654431   111233456888999999987664     4567899999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|+|||||+|||+.++
T Consensus       227 iLlLDEPtsgLD~~~~  242 (659)
T PLN03211        227 LLILDEPTSGLDATAA  242 (659)
T ss_pred             EEEEeCCCCCcCHHHH
Confidence            9999999999998754

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=2.7e-34  Score=228.05  Aligned_cols=147  Identities=16%  Similarity=0.080  Sum_probs=119.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++++++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ...+++.++|+||
T Consensus        14 ~~~l~~i~~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q   82 (236)
T cd03253          14 RPVLKDVSFTIPAGK----KVAIVGPSGSGKS-------TILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ   82 (236)
T ss_pred             CceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECC
Confidence            469999999999999    8889999999999       99999999999999999999987754  3455678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHH---------HHc--CCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWI---------DLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l---------~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++ .|+.||+.++...  .   . ...+.+.+         +.+  ++....++.+.+||+||||||+|||||+.+
T Consensus        83 ~~~~~~-~tv~~nl~~~~~~--~---~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~  155 (236)
T cd03253          83 DTVLFN-DTIGYNIRYGRPD--A---T-DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN  155 (236)
T ss_pred             CChhhc-chHHHHHhhcCCC--C---C-HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            998775 6999999764211  1   1 11122222         333  344445667889999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |+++||||||+|||+.++
T Consensus       156 p~llllDEP~~~LD~~~~  173 (236)
T cd03253         156 PPILLLDEATSALDTHTE  173 (236)
T ss_pred             CCEEEEeCCcccCCHHHH
Confidence            999999999999999764

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=233.20  Aligned_cols=153  Identities=16%  Similarity=0.134  Sum_probs=127.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~   83 (178)
                      .++|++|||+|.+||    +.+|+|+||+|||       ||++.+.|+.+     |++|+|.++|.++..    ...+++
T Consensus        58 ~~iL~~is~~i~~Ge----~~~IvG~nGsGKS-------TLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~  126 (305)
T PRK14264         58 DHALKGVSMDIPEKS----VTALIGPSGCGKS-------TFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRK  126 (305)
T ss_pred             eeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhh
Confidence            469999999999999    7889999999999       99999999975     689999999987643    335567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcC------------CCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHH
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRG------------IPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGN  146 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~------------~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGq  146 (178)
                      +++|+||++.+++ .|++||+.+......            ... ...++.+.++++.+++.    +..++++.+|||||
T Consensus       127 ~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq  205 (305)
T PRK14264        127 RVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQ  205 (305)
T ss_pred             ceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHH
Confidence            8999999988776 599999987533211            111 11245678889999884    45688899999999


Q ss_pred             HHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          147 KRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       147 kQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ||||+|||||+++|++|||||||+|||+.++
T Consensus       206 ~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~  236 (305)
T PRK14264        206 QQRLCIARCLAVDPEVILMDEPASALDPIAT  236 (305)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            9999999999999999999999999998754

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=5.6e-34  Score=252.88  Aligned_cols=152  Identities=16%  Similarity=0.087  Sum_probs=128.3

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+++   .++|+|+||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|.|.++|.++.+  ...+
T Consensus       348 f~y~~~---~~il~~i~l~i~~Ge----~iaIvG~SGsGKS-------TLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l  413 (592)
T PRK10790        348 FAYRDD---NLVLQNINLSVPSRG----FVALVGHTGSGKS-------TLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL  413 (592)
T ss_pred             EEeCCC---CceeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCceEEECCEEhhhCCHHHH
Confidence            567532   369999999999999    8889999999999       99999999999999999999999875  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-------C----cCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-------R----VSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~----~~~~LSgGqkQRv  150 (178)
                      ++.|+||||++.+|+. |+++|+.++.       ....+++.++++.+++.+..+       .    .-..||||||||+
T Consensus       414 ~~~i~~v~Q~~~lF~~-Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi  485 (592)
T PRK10790        414 RQGVAMVQQDPVVLAD-TFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL  485 (592)
T ss_pred             HhheEEEccCCccccc-hHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            8999999999998876 9999998742       122456777788877653222       2    2356999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+.+|++++||||||+||+.+.
T Consensus       486 alARaLl~~~~illlDEpts~LD~~t~  512 (592)
T PRK10790        486 ALARVLVQTPQILILDEATANIDSGTE  512 (592)
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence            999999999999999999999998753

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=9.8e-34  Score=227.61  Aligned_cols=138  Identities=15%  Similarity=0.093  Sum_probs=119.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|++.+++         +..++|+||++
T Consensus        17 ~~vl~~vs~~i~~Ge----~~~I~G~NGsGKS-------TLl~~i~Gl~~p~~G~i~~~~---------~~~i~~v~q~~   76 (251)
T PRK09544         17 RRVLSDVSLELKPGK----ILTLLGPNGAGKS-------TLVRVVLGLVAPDEGVIKRNG---------KLRIGYVPQKL   76 (251)
T ss_pred             ceEEEeEEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECC---------ccCEEEecccc
Confidence            469999999999999    8889999999999       999999999999999998765         23699999998


Q ss_pred             CCCCCC--CHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           93 GINEHL--TAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        93 ~l~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      .+++.+  |+.+++.+.   .    ....+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+
T Consensus        77 ~~~~~l~~~~~~~~~~~---~----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~  149 (251)
T PRK09544         77 YLDTTLPLTVNRFLRLR---P----GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ  149 (251)
T ss_pred             ccccccChhHHHHHhcc---c----cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            776654  666665421   1    1124567889999999998999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       150 ~LD~~~~  156 (251)
T PRK09544        150 GVDVNGQ  156 (251)
T ss_pred             CCCHHHH
Confidence            9998764

>KOG0055|consensus

Probab=100.00  E-value=2.3e-34  Score=264.47  Aligned_cols=156  Identities=19%  Similarity=0.144  Sum_probs=126.7

Q ss_pred             hhhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh
Q psy860            3 LFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ   80 (178)
Q Consensus         3 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~   80 (178)
                      -|+|+++- ..++|+|+||.|+.|+    .+||+|+||||||       |+++.+.|+..|++|+|.+||.++..+  ..
T Consensus       357 ~FsYPsRp-dv~Il~g~sl~i~~G~----~valVG~SGsGKS-------T~i~LL~RfydP~~G~V~idG~di~~~~~~~  424 (1228)
T KOG0055|consen  357 CFSYPSRP-DVKILKGVSLKIPSGQ----TVALVGPSGSGKS-------TLIQLLARFYDPTSGEVLIDGEDIRNLNLKW  424 (1228)
T ss_pred             EecCCCCC-cchhhCCeEEEeCCCC----EEEEECCCCCCHH-------HHHHHHHHhcCCCCceEEEcCccchhcchHH
Confidence            48897776 4589999999999999    8999999999999       999999999999999999999999864  56


Q ss_pred             hccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-------CCccccC----cCCCCChHHHHH
Q psy860           81 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-------LTEYRHR----VSGRYSGGNKRK  149 (178)
Q Consensus        81 ~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~~~~----~~~~LSgGqkQR  149 (178)
                      +|+.||.|+|+|.+ +..|++||+.+..     +. ..++++.++.+..+       +++..+.    .-.+||||||||
T Consensus       425 lr~~iglV~QePvl-F~~tI~eNI~~G~-----~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR  497 (1228)
T KOG0055|consen  425 LRSQIGLVSQEPVL-FATTIRENIRYGK-----PD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR  497 (1228)
T ss_pred             HHhhcCeeeechhh-hcccHHHHHhcCC-----Cc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence            88999999999955 5789999998632     11 22334444443332       2222222    234699999999


Q ss_pred             HHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          150 LSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       150 v~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ++|||||+.+|++|+||||||+||+++.
T Consensus       498 IAIARalv~~P~ILLLDEaTSaLD~~se  525 (1228)
T KOG0055|consen  498 IAIARALVRNPKILLLDEATSALDAESE  525 (1228)
T ss_pred             HHHHHHHHhCCCEEEecCcccccCHHHH
Confidence            9999999999999999999999999864

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=1.4e-33  Score=226.16  Aligned_cols=154  Identities=17%  Similarity=0.171  Sum_probs=126.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCcccccccccccccccH--Hhhc-cceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNIMHL--FQYL-SGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~~~~--~~~~-~~ig~   87 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++++.|+  .+|++|++.++|.++...  ...+ .+++|
T Consensus        20 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   88 (252)
T CHL00131         20 NEILKGLNLSINKGE----IHAIMGPNGSGKS-------TLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFL   88 (252)
T ss_pred             EEeeecceeEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEE
Confidence            469999999999999    8889999999999       999999997  579999999999887543  2222 25899


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhc----CCCC---CChhHHHHHHHHHcCCC-ccccCcCC-CCChHHHHHHHHHHHHhC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALR----GIPG---VKSGPIIDYWIDLLGLT-EYRHRVSG-RYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~----~~~~---~~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGqkQRv~IAraL~~  158 (178)
                      +||++.+++.+|+.+++.+.....    ....   .+..+++.++++.+++. ...++.+. +|||||||||+|||||+.
T Consensus        89 ~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~  168 (252)
T CHL00131         89 AFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL  168 (252)
T ss_pred             EeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc
Confidence            999999999999999987643211    1111   11234577889999997 56788887 599999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+++||||||+|||+.++
T Consensus       169 ~p~llllDEPt~~LD~~~~  187 (252)
T CHL00131        169 DSELAILDETDSGLDIDAL  187 (252)
T ss_pred             CCCEEEEcCCcccCCHHHH
Confidence            9999999999999998764

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-33  Score=227.40  Aligned_cols=153  Identities=18%  Similarity=0.116  Sum_probs=126.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----ccccccccccccc------cHHhh
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIM------HLFQY   81 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~------~~~~~   81 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|     ++|++.++|.++.      ....+
T Consensus        29 ~~vl~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~   97 (265)
T PRK14252         29 YQALKNINMMVHEKQ----VTALIGPSGCGKS-------TFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEV   97 (265)
T ss_pred             eeeeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHH
Confidence            469999999999999    8889999999999       999999999764     7999999987653      12345


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMAL  156 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL  156 (178)
                      +++++|+||++.+++. |+.||+.+.....+.... ..++.+.++++.+++.    +..++.+.+|||||||||+|||||
T Consensus        98 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  176 (265)
T PRK14252         98 RMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL  176 (265)
T ss_pred             hccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHH
Confidence            6789999999988875 999999875433332221 2245677888888873    456788999999999999999999


Q ss_pred             hCCCCeEEeeCCCCCCCCCCC
Q psy860          157 IGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       157 ~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +.+|++++|||||+|||+.++
T Consensus       177 ~~~p~llllDEPt~gLD~~~~  197 (265)
T PRK14252        177 ATDPEILLFDEPTSALDPIAT  197 (265)
T ss_pred             HcCCCEEEEeCCCccCCHHHH
Confidence            999999999999999998754

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=9.1e-34  Score=250.97  Aligned_cols=154  Identities=22%  Similarity=0.171  Sum_probs=130.8

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+++.  .++|+||||++++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+  ...+
T Consensus       346 f~y~~~~--~~il~~i~~~i~~G~----~~aivG~sGsGKS-------TL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~  412 (574)
T PRK11160        346 FTYPDQP--QPVLKGLSLQIKAGE----KVALLGRTGCGKS-------TLLQLLTRAWDPQQGEILLNGQPIADYSEAAL  412 (574)
T ss_pred             EECCCCC--CcceecceEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence            5564331  369999999999999    8889999999999       99999999999999999999998876  4577


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC----------cCCCCChHHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR----------VSGRYSGGNKRKLS  151 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~----------~~~~LSgGqkQRv~  151 (178)
                      |+.|+||||++.+|. -|++||+.++.     + ....+++.++++.+++.+..++          ....||||||||++
T Consensus       413 r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRia  485 (574)
T PRK11160        413 RQAISVVSQRVHLFS-ATLRDNLLLAA-----P-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG  485 (574)
T ss_pred             HhheeEEcccchhhc-ccHHHHhhcCC-----C-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHH
Confidence            889999999998876 59999997642     1 2335668888999998765443          45679999999999


Q ss_pred             HHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          152 TAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       152 IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |||||+.+|++++||||||+||+.+.
T Consensus       486 lARall~~~~ililDE~ts~lD~~t~  511 (574)
T PRK11160        486 IARALLHDAPLLLLDEPTEGLDAETE  511 (574)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            99999999999999999999998763

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.8e-33  Score=222.22  Aligned_cols=143  Identities=20%  Similarity=0.212  Sum_probs=119.7

Q ss_pred             hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCC--CCC
Q psy860           21 EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGIN--EHL   98 (178)
Q Consensus        21 ~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~--~~l   98 (178)
                      |+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|+++.   +.+++++|+||++.++  +.+
T Consensus         1 l~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~---~~~~~i~~v~q~~~~~~~~~~   66 (223)
T TIGR03771         1 LSADKGE----LLGLLGPNGAGKT-------TLLRAILGLIPPAKGTVKVAGASPG---KGWRHIGYVPQRHEFAWDFPI   66 (223)
T ss_pred             CccCCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCccch---HhhCcEEEecccccccCCCCc
Confidence            5688999    7889999999999       9999999999999999999998753   3456799999998764  347


Q ss_pred             CHHHHHHHHHHhc-C---CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860           99 TAQEMLECFSALR-G---IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus        99 tv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                      |+.+++.+..... +   ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|||+
T Consensus        67 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~  146 (223)
T TIGR03771        67 SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM  146 (223)
T ss_pred             cHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            9999987642111 1   11122345688899999999888999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy860          175 YNT  177 (178)
Q Consensus       175 ~~~  177 (178)
                      .++
T Consensus       147 ~~~  149 (223)
T TIGR03771       147 PTQ  149 (223)
T ss_pred             HHH
Confidence            764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=7.7e-34  Score=256.63  Aligned_cols=154  Identities=14%  Similarity=0.025  Sum_probs=127.0

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |+|++.  ..++|+|+||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|.|.++|.++.+  ..++
T Consensus       485 f~y~~~--~~~vL~~isl~i~~Ge----~vaIvG~sGsGKS-------TLlklL~gl~~p~~G~I~idg~~i~~~~~~~l  551 (710)
T TIGR03796       485 FGYSPL--EPPLIENFSLTLQPGQ----RVALVGGSGSGKS-------TIAKLVAGLYQPWSGEILFDGIPREEIPREVL  551 (710)
T ss_pred             EecCCC--CCCcccceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence            566532  2479999999999999    8889999999999       99999999999999999999999875  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------c----CcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------H----RVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~----~~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.+|. -|++||+.++.     + ....+++.++++..++.+..       +    ..-..||||||||+
T Consensus       552 r~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi  624 (710)
T TIGR03796       552 ANSVAMVDQDIFLFE-GTVRDNLTLWD-----P-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL  624 (710)
T ss_pred             HhheeEEecCChhhh-ccHHHHhhCCC-----C-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence            999999999998875 59999997531     1 12345566777776664322       2    23456999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+.+|++++||||||+||+.+.
T Consensus       625 aLARall~~p~iliLDEptS~LD~~te  651 (710)
T TIGR03796       625 EIARALVRNPSILILDEATSALDPETE  651 (710)
T ss_pred             HHHHHHhhCCCEEEEECccccCCHHHH
Confidence            999999999999999999999998753

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-33  Score=218.33  Aligned_cols=156  Identities=16%  Similarity=0.085  Sum_probs=135.6

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEe
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYC   88 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v   88 (178)
                      .....+++|||+++.||    ..+|+||||+|||       |+++.+.|-..|++|++.++|.+...  ..++.++-+++
T Consensus        12 ~Gr~ll~~vsl~~~pGe----v~ailGPNGAGKS-------TlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl   80 (259)
T COG4559          12 AGRRLLDGVSLDLRPGE----VLAILGPNGAGKS-------TLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL   80 (259)
T ss_pred             ecceeccCcceeccCCc----EEEEECCCCccHH-------HHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence            44689999999999999    6779999999999       99999999999999999999998765  45667788999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcC--CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC------CC
Q psy860           89 PQFNGINEHLTAQEMLECFSALRG--IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG------DR  160 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~------~P  160 (178)
                      ||+..+-+.+||+|.+.+...-.+  ....+..+.++++|+..++..++.+...+|||||||||.+||.|++      ++
T Consensus        81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~  160 (259)
T COG4559          81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG  160 (259)
T ss_pred             ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence            999999999999999998654332  2223556678999999999999999999999999999999999986      44


Q ss_pred             CeEEeeCCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~~  177 (178)
                      ++|+||||||+||+.++
T Consensus       161 r~L~LDEPtsaLDi~HQ  177 (259)
T COG4559         161 RWLFLDEPTSALDIAHQ  177 (259)
T ss_pred             ceEEecCCccccchHHH
Confidence            68999999999998754

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=2.8e-34  Score=228.41  Aligned_cols=151  Identities=19%  Similarity=0.144  Sum_probs=119.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ..++++.++|+||
T Consensus        16 ~~~l~~i~~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   84 (238)
T cd03249          16 VPILKGLSLTIPPGK----TVALVGSSGCGKS-------TVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQ   84 (238)
T ss_pred             ccceeceEEEecCCC----EEEEEeCCCCCHH-------HHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECC
Confidence            369999999999999    7889999999999       99999999999999999999987643  3345667999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhH-----HHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGP-----IIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      ++.+++ .|++|++.+.....  ...+..+     .+.++++.+  ++....++.+.+|||||||||+|||||+.+|+++
T Consensus        85 ~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  161 (238)
T cd03249          85 EPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKIL  161 (238)
T ss_pred             chhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence            988775 69999987632111  0001010     012222333  4445567788999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      +|||||+|||+.++
T Consensus       162 llDEP~~gLD~~~~  175 (238)
T cd03249         162 LLDEATSALDAESE  175 (238)
T ss_pred             EEeCccccCCHHHH
Confidence            99999999998764

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=6.9e-34  Score=247.40  Aligned_cols=146  Identities=18%  Similarity=0.117  Sum_probs=123.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ....++.++|+||
T Consensus        16 ~~il~~vsl~i~~Ge----~~~liG~nGsGKS-------TLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q   84 (490)
T PRK10938         16 TKTLQLPSLTLNAGD----SWAFVGANGSGKS-------ALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQ   84 (490)
T ss_pred             eeecccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceecc
Confidence            469999999999999    8889999999999       99999999999999999988876543  2344567999999


Q ss_pred             CCCC--C------CCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           91 FNGI--N------EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        91 ~~~l--~------~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      ++.+  +      ..+|+.+++.+.        .+..+++.++++.+++.+..++++.+|||||||||+||+||+.+|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  156 (490)
T PRK10938         85 RNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL  156 (490)
T ss_pred             CcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            8643  1      146777765431        12356788999999999889999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      |||||||+|||+.++
T Consensus       157 llLDEPt~~LD~~~~  171 (490)
T PRK10938        157 LILDEPFDGLDVASR  171 (490)
T ss_pred             EEEcCCcccCCHHHH
Confidence            999999999999764

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=1.2e-33  Score=247.76  Aligned_cols=154  Identities=19%  Similarity=0.179  Sum_probs=127.9

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |+|+.+.  .++|+|+||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+  ..++
T Consensus       328 f~y~~~~--~~il~~i~l~i~~G~----~~~ivG~sGsGKS-------TL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l  394 (529)
T TIGR02857       328 VAYPGRR--APALRPVSFTVPPGE----RVALVGPSGAGKS-------TLLNLLLGFVDPTEGSIAVNGVPLADADADSW  394 (529)
T ss_pred             EECCCCC--cccccceeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence            5664321  369999999999999    8889999999999       99999999999999999999998875  3678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-----------CcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-----------RVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv  150 (178)
                      |+.++||+|++.+|+ .|++||+.++.     + ....+++.++++..++.+..+           ....+||||||||+
T Consensus       395 r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri  467 (529)
T TIGR02857       395 RDQIAWVPQHPFLFA-GTIAENIRLAR-----P-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRL  467 (529)
T ss_pred             HhheEEEcCCCcccC-cCHHHHHhccC-----C-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHH
Confidence            889999999998875 59999997642     1 112456777777777654322           23467999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+.+|++++||||||+||+.+.
T Consensus       468 ~laRal~~~~~ililDE~ts~lD~~~~  494 (529)
T TIGR02857       468 ALARAFLRDAPLLLLDEPTAHLDAETE  494 (529)
T ss_pred             HHHHHHhcCCCEEEEeCcccccCHHHH
Confidence            999999999999999999999999764

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=1e-33  Score=215.49  Aligned_cols=118  Identities=24%  Similarity=0.262  Sum_probs=107.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q~   91 (178)
                      .++|+++||++.+||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++... .+.++.++|+||+
T Consensus        13 ~~~l~~~~~~i~~Ge----~~~i~G~nGsGKS-------tLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~   81 (173)
T cd03230          13 KTALDDISLTVEKGE----IYGLLGPNGAGKT-------TLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEE   81 (173)
T ss_pred             eeeeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecC
Confidence            469999999999999    8889999999999       999999999999999999999876542 3456789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++.+|+.||+.                                    |||||||||+|||||+.+|++++|||||++
T Consensus        82 ~~~~~~~tv~~~~~------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~  125 (173)
T cd03230          82 PSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSG  125 (173)
T ss_pred             CccccCCcHHHHhh------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence            99988899999873                                    999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       126 LD~~~~  131 (173)
T cd03230         126 LDPESR  131 (173)
T ss_pred             CCHHHH
Confidence            998764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=1.5e-33  Score=252.50  Aligned_cols=162  Identities=19%  Similarity=0.194  Sum_probs=138.7

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh--
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ--   80 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~--   80 (178)
                      .|..+.+..++|+++||+++.||    +.+|.|+||+|||       ||++++.|+.+|++|++.++|+++...  .+  
T Consensus        13 ~y~~~~~~~~il~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~   81 (648)
T PRK10535         13 SYPSGEEQVEVLKGISLDIYAGE----MVAIVGASGSGKS-------TLMNILGCLDKPTSGTYRVAGQDVATLDADALA   81 (648)
T ss_pred             EeCCCCCCeeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence            45433333579999999999999    8889999999999       999999999999999999999987642  22  


Q ss_pred             -h-ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           81 -Y-LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        81 -~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                       + ++.++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.+..++.+.+||+|||||++|||||+.
T Consensus        82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~  161 (648)
T PRK10535         82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN  161 (648)
T ss_pred             HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence             2 46899999999999999999999875544343334445678899999999988999999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       162 ~P~lLllDEP~~gLD~~s~  180 (648)
T PRK10535        162 GGQVILADEPTGALDSHSG  180 (648)
T ss_pred             CCCEEEEECCCCCCCHHHH
Confidence            9999999999999999764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=244.54  Aligned_cols=153  Identities=16%  Similarity=0.167  Sum_probs=126.3

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEecC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCPQ   90 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~Q   90 (178)
                      ++|++|||+|+.||    +.+|+|+||+|||       ||++++.|+.+|++|+|+++|+++...   ...+++++|+||
T Consensus       262 ~~l~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q  330 (491)
T PRK10982        262 PSIRDVSFDLHKGE----ILGIAGLVGAKRT-------DIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTE  330 (491)
T ss_pred             cccceeeEEEeCCc----EEEEecCCCCCHH-------HHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence            58999999999999    8889999999999       999999999999999999999877532   234677999999


Q ss_pred             CC---CCCCCCCHHHHHHH-----HHHhcCC-CCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860           91 FN---GINEHLTAQEMLEC-----FSALRGI-PGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        91 ~~---~l~~~ltv~e~l~~-----~~~~~~~-~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      ++   .+++++|+.++..+     .....+. .....++++.++++.+++. +..++++.+|||||||||+||||++.+|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p  410 (491)
T PRK10982        331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQP  410 (491)
T ss_pred             chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCC
Confidence            85   57888888776322     1111121 1223345678899999995 5679999999999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~~  177 (178)
                      ++|||||||+|||+.++
T Consensus       411 ~illLDEPt~gLD~~~~  427 (491)
T PRK10982        411 EILMLDEPTRGIDVGAK  427 (491)
T ss_pred             CEEEEcCCCcccChhHH
Confidence            99999999999999865

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=1.7e-33  Score=228.97  Aligned_cols=145  Identities=17%  Similarity=0.127  Sum_probs=126.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|++||    ..+|+|+||+|||       ||++.+.|+.+ ++|+|+++|.++..  ...++++|+|+||
T Consensus        17 ~~~l~~isl~I~~Ge----~~~IvG~nGsGKS-------TLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q   84 (275)
T cd03289          17 NAVLENISFSISPGQ----RVGLLGRTGSGKS-------TLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQ   84 (275)
T ss_pred             CcceeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECC
Confidence            469999999999999    8889999999999       99999999987 78999999998754  3567788999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCC-----------CChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGR-----------YSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++ .|+++|+..+.   .    ...+++.++++.+++.+..++++..           ||+|||||++|||||+.+
T Consensus        85 ~~~lf~-~tv~~nl~~~~---~----~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~  156 (275)
T cd03289          85 KVFIFS-GTFRKNLDPYG---K----WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK  156 (275)
T ss_pred             Ccccch-hhHHHHhhhcc---C----CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999887 49999996431   1    1235677888999998888888876           999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++++|||||++||+.++
T Consensus       157 p~illlDEpts~LD~~~~  174 (275)
T cd03289         157 AKILLLDEPSAHLDPITY  174 (275)
T ss_pred             CCEEEEECccccCCHHHH
Confidence            999999999999999754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=1.4e-33  Score=253.10  Aligned_cols=154  Identities=19%  Similarity=0.130  Sum_probs=125.2

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|....  .++|+|+|++|++||    +.+|+|.||||||       ||+|.+.|+..|++|+|.+||.++.+  ...+
T Consensus       479 f~y~~~~--~~vL~~isL~I~~Ge----~vaIvG~SGsGKS-------TL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l  545 (709)
T COG2274         479 FRYGPDD--PPVLEDLSLEIPPGE----KVAIVGRSGSGKS-------TLLKLLLGLYKPQQGRILLDGVDLNDIDLASL  545 (709)
T ss_pred             EEeCCCC--cchhhceeEEeCCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence            5564443  269999999999999    9999999999999       99999999999999999999999876  5678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-----------cccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-----------YRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv  150 (178)
                      |+.||||+|++.+|. -|++||+.+..     +. ...+.+.++++..+..+           .....-..||||||||+
T Consensus       546 R~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~-~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl  618 (709)
T COG2274         546 RRQVGYVLQDPFLFS-GSIRENIALGN-----PE-ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL  618 (709)
T ss_pred             HhheeEEcccchhhc-CcHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence            999999999988764 59999998632     11 11234555555544432           22334557999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+++|++|+||||||+||+.+.
T Consensus       619 alARaLl~~P~ILlLDEaTSaLD~~sE  645 (709)
T COG2274         619 ALARALLSKPKILLLDEATSALDPETE  645 (709)
T ss_pred             HHHHHhccCCCEEEEeCcccccCHhHH
Confidence            999999999999999999999999764

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=248.59  Aligned_cols=155  Identities=17%  Similarity=0.133  Sum_probs=127.2

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+.+  ..++|+|+|++|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+  ...+
T Consensus       349 f~y~~~--~~~il~~i~l~i~~G~----~~aIvG~sGsGKS-------TLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~  415 (582)
T PRK11176        349 FTYPGK--EVPALRNINFKIPAGK----TVALVGRSGSGKS-------TIANLLTRFYDIDEGEILLDGHDLRDYTLASL  415 (582)
T ss_pred             EecCCC--CCccccCceEEeCCCC----EEEEECCCCCCHH-------HHHHHHHhccCCCCceEEECCEEhhhcCHHHH
Confidence            566432  2479999999999999    8889999999999       99999999999999999999998876  4567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccCcC----CCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHRVS----GRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~~----~~LSgGqkQRv  150 (178)
                      ++.|+||||++.+|+ -|++||+.++.     +.....+++.++++.+++.+.       .|..+    .+||||||||+
T Consensus       416 ~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi  489 (582)
T PRK11176        416 RNQVALVSQNVHLFN-DTIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI  489 (582)
T ss_pred             HhhceEEccCceeec-chHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHH
Confidence            889999999998875 69999997531     111234567777777775432       23323    56999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+.+|++++||||||+||+.+.
T Consensus       490 ~LARall~~~~ililDEptsaLD~~t~  516 (582)
T PRK11176        490 AIARALLRDSPILILDEATSALDTESE  516 (582)
T ss_pred             HHHHHHHhCCCEEEEECccccCCHHHH
Confidence            999999999999999999999999763

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.98  E-value=2e-33  Score=250.59  Aligned_cols=155  Identities=21%  Similarity=0.166  Sum_probs=134.5

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---cccccccccccccHHhhccceEE
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMHLFQYLSGIGY   87 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~~~~~~~~ig~   87 (178)
                      |..++|+|||+++++||    +.+|+|+||+|||       ||++.+.|..++.   +|++.++|.++.. ...++.+||
T Consensus        36 ~~~~iL~~vs~~i~~Ge----~~aI~G~sGsGKS-------TLL~~L~g~~~~~~~~~G~i~~~g~~~~~-~~~~~~i~y  103 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGE----LLAVMGSSGAGKT-------TLMNALAFRSPKGVKGSGSVLLNGMPIDA-KEMRAISAY  103 (617)
T ss_pred             CccccccCCEEEEeCCe----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcceeEEEECCEECCH-HHHhhhcee
Confidence            44679999999999999    7889999999999       9999999987764   7999999987753 456778999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcC---CCCCChhHHHHHHHHHcCCCccccCcCC------CCChHHHHHHHHHHHHhC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRG---IPGVKSGPIIDYWIDLLGLTEYRHRVSG------RYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~------~LSgGqkQRv~IAraL~~  158 (178)
                      |+|++.+++.+||+||+.|....+.   ...++.+++++++++.+++.+..|+.++      .|||||||||+||+||+.
T Consensus       104 v~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~  183 (617)
T TIGR00955       104 VQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT  183 (617)
T ss_pred             eccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc
Confidence            9999999999999999998776542   1223344578999999999988898887      499999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||+|||+.++
T Consensus       184 ~p~vlllDEPtsgLD~~~~  202 (617)
T TIGR00955       184 DPPLLFCDEPTSGLDSFMA  202 (617)
T ss_pred             CCCEEEeeCCCcchhHHHH
Confidence            9999999999999998753

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.98  E-value=1.9e-33  Score=254.02  Aligned_cols=153  Identities=17%  Similarity=0.108  Sum_probs=126.0

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |+|+.+   .++|+||||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+  ..++
T Consensus       481 f~y~~~---~~iL~~isl~i~~G~----~vaIvG~SGsGKS-------TLlklL~gl~~p~~G~I~idg~~i~~~~~~~l  546 (708)
T TIGR01193       481 YSYGYG---SNILSDISLTIKMNS----KTTIVGMSGSGKS-------TLAKLLVGFFQARSGEILLNGFSLKDIDRHTL  546 (708)
T ss_pred             EEcCCC---CcceeceeEEECCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCcEEEECCEEHHHcCHHHH
Confidence            567432   479999999999999    8889999999999       99999999999999999999999876  4578


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.+|.. |++||+.++..    + ....+++.++++..++.+.           .......||||||||+
T Consensus       547 r~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi  620 (708)
T TIGR01193       547 RQFINYLPQEPYIFSG-SILENLLLGAK----E-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI  620 (708)
T ss_pred             HHheEEEecCceehhH-HHHHHHhccCC----C-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence            8999999999998765 99999986421    1 1223456666666665322           2233457999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +||||++.+|++|+||||||+||+.+
T Consensus       621 alARall~~p~iliLDE~Ts~LD~~t  646 (708)
T TIGR01193       621 ALARALLTDSKVLILDESTSNLDTIT  646 (708)
T ss_pred             HHHHHHhhCCCEEEEeCccccCCHHH
Confidence            99999999999999999999999865

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.98  E-value=1.4e-33  Score=215.65  Aligned_cols=120  Identities=23%  Similarity=0.180  Sum_probs=109.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v   88 (178)
                      .++++++||++++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..    ....++.++|+
T Consensus        13 ~~~l~~i~~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~   81 (178)
T cd03229          13 KTVLNDVSLNIEAGE----IVALLGPSGSGKS-------TLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMV   81 (178)
T ss_pred             eEEEeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEE
Confidence            469999999999999    7889999999999       99999999999999999999987754    23556789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      +|++.+++.+|+.|++.+.                                  ||||||||++|||||+.+|++++||||
T Consensus        82 ~q~~~~~~~~t~~~~l~~~----------------------------------lS~G~~qr~~la~al~~~p~llilDEP  127 (178)
T cd03229          82 FQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVLLLDEP  127 (178)
T ss_pred             ecCCccCCCCCHHHheeec----------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            9999988899999987542                                  999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       128 ~~~LD~~~~  136 (178)
T cd03229         128 TSALDPITR  136 (178)
T ss_pred             cccCCHHHH
Confidence            999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.98  E-value=3.2e-33  Score=252.76  Aligned_cols=154  Identities=15%  Similarity=0.077  Sum_probs=126.6

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~   81 (178)
                      |.|++.. ..++|+|+||+|++||    ..+|+|+||+|||       |+++.+.|+.+|++|+|.++|.++.+.  ..+
T Consensus       486 f~Y~~~~-~~~vL~~isl~i~~Ge----~vaIvG~SGsGKS-------TLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l  553 (711)
T TIGR00958       486 FSYPNRP-DVPVLKGLTFTLHPGE----VVALVGPSGSGKS-------TVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL  553 (711)
T ss_pred             EECCCCC-CCccccCceEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence            5675321 2479999999999999    8889999999999       999999999999999999999998764  567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cC----cCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HR----VSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~----~~~~LSgGqkQRv  150 (178)
                      ++.|+||||++.+|. -|++||+.++.     + ....+++.++++..++.+..       |.    .-.+||||||||+
T Consensus       554 r~~i~~v~Q~~~lF~-gTIreNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl  626 (711)
T TIGR00958       554 HRQVALVGQEPVLFS-GSVRENIAYGL-----T-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI  626 (711)
T ss_pred             HhhceEEecCccccc-cCHHHHHhcCC-----C-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence            889999999998865 69999997631     1 12245677777777764332       22    2357999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +||||++.+|+++|||||||+||+.+
T Consensus       627 alARALl~~p~ILILDEpTSaLD~~t  652 (711)
T TIGR00958       627 AIARALVRKPRVLILDEATSALDAEC  652 (711)
T ss_pred             HHHHHHhcCCCEEEEEccccccCHHH
Confidence            99999999999999999999999864

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.98  E-value=2.9e-33  Score=214.64  Aligned_cols=120  Identities=20%  Similarity=0.220  Sum_probs=107.8

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEecCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCPQF   91 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~Q~   91 (178)
                      ++++|||++++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...   ...++.++|+||+
T Consensus        15 ~l~~vs~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~   83 (182)
T cd03215          15 AVRDVSFEVRAGE----IVGIAGLVGNGQT-------ELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPED   83 (182)
T ss_pred             eecceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCC
Confidence            8999999999999    7889999999999       999999999999999999999887643   2356789999998


Q ss_pred             C---CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           92 N---GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        92 ~---~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      +   .+++.+|++||+.++..                                ||+||||||+|||||+.+|++++||||
T Consensus        84 ~~~~~~~~~~t~~e~l~~~~~--------------------------------LS~G~~qrl~la~al~~~p~llllDEP  131 (182)
T cd03215          84 RKREGLVLDLSVAENIALSSL--------------------------------LSGGNQQKVVLARWLARDPRVLILDEP  131 (182)
T ss_pred             cccCcccCCCcHHHHHHHHhh--------------------------------cCHHHHHHHHHHHHHccCCCEEEECCC
Confidence            5   57888999999876421                                999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       132 ~~~LD~~~~  140 (182)
T cd03215         132 TRGVDVGAK  140 (182)
T ss_pred             CcCCCHHHH
Confidence            999999764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.98  E-value=3e-33  Score=240.16  Aligned_cols=159  Identities=16%  Similarity=0.075  Sum_probs=140.2

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--cHHh-hcc
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--HLFQ-YLS   83 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~~~~-~~~   83 (178)
                      .+.+|.++||++|||++++||    ..+++|.||+|||       ||+|.+.|..+|++|+|+++|+...  .+.+ ...
T Consensus        15 ~K~FggV~AL~~v~l~v~~GE----V~aL~GeNGAGKS-------TLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~   83 (500)
T COG1129          15 SKSFGGVKALDGVSLTVRPGE----VHALLGENGAGKS-------TLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA   83 (500)
T ss_pred             eEEcCCceeeccceeEEeCce----EEEEecCCCCCHH-------HHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence            567888999999999999999    6779999999999       9999999999999999999999875  3443 457


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHH----hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSA----LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      +|+.|+|+.++.|++||.||+.+...    ...+.+++.++++.++|+.+++....+.++.+||.||||.|+|||||..+
T Consensus        84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~  163 (500)
T COG1129          84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD  163 (500)
T ss_pred             CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcC
Confidence            89999999999999999999976432    22345566778899999999996558999999999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~  176 (178)
                      +++||||||||+|+...
T Consensus       164 arllIlDEPTaaLt~~E  180 (500)
T COG1129         164 ARVLILDEPTAALTVKE  180 (500)
T ss_pred             CCEEEEcCCcccCCHHH
Confidence            99999999999998754

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.98  E-value=2e-33  Score=253.42  Aligned_cols=154  Identities=21%  Similarity=0.196  Sum_probs=127.2

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+.+  ..++|+||||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+  ...+
T Consensus       471 f~Y~~~--~~~vL~~i~l~i~~G~----~iaIvG~sGsGKS-------TLlklL~gl~~p~~G~I~idg~~l~~~~~~~l  537 (694)
T TIGR03375       471 FAYPGQ--ETPALDNVSLTIRPGE----KVAIIGRIGSGKS-------TLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL  537 (694)
T ss_pred             EEeCCC--CccceeeeeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence            566432  2469999999999999    8889999999999       99999999999999999999999875  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-----------CcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-----------RVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.+|. -|++||+.+..     + ....+++.++++..++.+..+           ..-..||||||||+
T Consensus       538 r~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl  610 (694)
T TIGR03375       538 RRNIGYVPQDPRLFY-GTLRDNIALGA-----P-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV  610 (694)
T ss_pred             HhccEEECCChhhhh-hhHHHHHhCCC-----C-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence            899999999998876 59999997631     1 123455677777776643322           23357999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+.+|++++||||||+||+.+.
T Consensus       611 alARall~~p~iliLDE~Ts~LD~~te  637 (694)
T TIGR03375       611 ALARALLRDPPILLLDEPTSAMDNRSE  637 (694)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            999999999999999999999999753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.98  E-value=3.8e-33  Score=216.11  Aligned_cols=124  Identities=21%  Similarity=0.253  Sum_probs=111.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--CcccccccccccccccHHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      .++|+++||+|+.||    +.+|+|+||+|||       ||++.+.|+.  +|++|++.++|+++... .+++.++|+||
T Consensus        22 ~~~l~~~~~~i~~Ge----~~~l~G~nGsGKS-------tLl~~i~Gl~~~~~~~G~i~~~g~~~~~~-~~~~~i~~~~q   89 (194)
T cd03213          22 KQLLKNVSGKAKPGE----LTAIMGPSGAGKS-------TLLNALAGRRTGLGVSGEVLINGRPLDKR-SFRKIIGYVPQ   89 (194)
T ss_pred             ccceecceEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCceEEEECCEeCchH-hhhheEEEccC
Confidence            479999999999999    7889999999999       9999999999  99999999999987643 55678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++.+|+.||+.+.....                             +|||||||||+|||||+.+|++++|||||+
T Consensus        90 ~~~~~~~~t~~~~i~~~~~~~-----------------------------~LS~G~~qrv~laral~~~p~illlDEP~~  140 (194)
T cd03213          90 DDILHPTLTVRETLMFAAKLR-----------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTS  140 (194)
T ss_pred             cccCCCCCcHHHHHHHHHHhc-----------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            999999999999987542110                             899999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       141 ~LD~~~~  147 (194)
T cd03213         141 GLDSSSA  147 (194)
T ss_pred             CCCHHHH
Confidence            9998764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.98  E-value=4.5e-33  Score=217.28  Aligned_cols=138  Identities=18%  Similarity=0.102  Sum_probs=116.1

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      ++++++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ..+.++.++|+||+
T Consensus        22 ~~l~~isl~i~~G~----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~   90 (207)
T cd03369          22 PVLKNVSFKVKAGE----KIGIVGRTGAGKS-------TLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD   90 (207)
T ss_pred             ccccCceEEECCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecC
Confidence            69999999999999    8889999999999       99999999999999999999987643  33456789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++ .|+++|+.++.   ..    ..+.+.+.++       .++++.+|||||||||+|||||+.+|+++||||||+|
T Consensus        91 ~~~~~-~tv~~~l~~~~---~~----~~~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~  155 (207)
T cd03369          91 PTLFS-GTIRSNLDPFD---EY----SDEEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS  155 (207)
T ss_pred             CcccC-ccHHHHhcccC---CC----CHHHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence            98776 59999986431   11    1223344443       3678899999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       156 LD~~~~  161 (207)
T cd03369         156 IDYATD  161 (207)
T ss_pred             CCHHHH
Confidence            999754

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.98  E-value=4e-33  Score=225.62  Aligned_cols=144  Identities=15%  Similarity=0.077  Sum_probs=123.7

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      ..++|++|||+|.+||    ..+|+|+||+|||       ||++++.|+.+|++|++.++|.           +++++|.
T Consensus        36 ~~~il~~is~~i~~Ge----~~~liG~NGsGKS-------TLlk~L~Gl~~p~~G~I~~~g~-----------~~~~~~~   93 (264)
T PRK13546         36 TFFALDDISLKAYEGD----VIGLVGINGSGKS-------TLSNIIGGSLSPTVGKVDRNGE-----------VSVIAIS   93 (264)
T ss_pred             ceEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEECCE-----------EeEEecc
Confidence            3579999999999999    7889999999999       9999999999999999988874           4677788


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+.+.+|+.+|+.+.....+....+..+.+.++++.+++.+..++.+.+||+||+|||+|||||+.+|++|||||||+|
T Consensus        94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~g  173 (264)
T PRK13546         94 AGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSV  173 (264)
T ss_pred             cCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence            77778899999998654443333333344567788899999889999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       174 LD~~~~  179 (264)
T PRK13546        174 GDQTFA  179 (264)
T ss_pred             CCHHHH
Confidence            998653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.98  E-value=3.1e-33  Score=216.20  Aligned_cols=123  Identities=18%  Similarity=0.158  Sum_probs=109.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--CcccccccccccccccHHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      .++|++|||++++||    +.+|+|+||+|||       ||++.+.|+.  +|++|++.++|+++.  ...++.++|++|
T Consensus        20 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~~~G~i~~~g~~~~--~~~~~~i~~~~q   86 (192)
T cd03232          20 RQLLNNISGYVKPGT----LTALMGESGAGKT-------TLLDVLAGRKTAGVITGEILINGRPLD--KNFQRSTGYVEQ   86 (192)
T ss_pred             eEeEEccEEEEeCCc----EEEEECCCCCCHH-------HHHHHHhCCCcCCCcceEEEECCEehH--HHhhhceEEecc
Confidence            469999999999999    8889999999999       9999999975  489999999998775  455678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++.+|++||+.+....                +             +|||||||||+|||||+.+|+++++||||+
T Consensus        87 ~~~~~~~~tv~~~l~~~~~~----------------~-------------~LSgGe~qrv~la~al~~~p~vlllDEP~~  137 (192)
T cd03232          87 QDVHSPNLTVREALRFSALL----------------R-------------GLSVEQRKRLTIGVELAAKPSILFLDEPTS  137 (192)
T ss_pred             cCccccCCcHHHHHHHHHHH----------------h-------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCc
Confidence            99999999999999764210                0             899999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       138 ~LD~~~~  144 (192)
T cd03232         138 GLDSQAA  144 (192)
T ss_pred             CCCHHHH
Confidence            9998764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.98  E-value=5.9e-33  Score=221.88  Aligned_cols=154  Identities=16%  Similarity=0.133  Sum_probs=122.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--CcccccccccccccccH--Hh-hccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQAAQNSLLMTNIMHL--FQ-YLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~g~i~~~g~~~~~~--~~-~~~~ig~   87 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++++.|+.  +|++|++.++|.++...  .. .++.++|
T Consensus        14 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   82 (248)
T PRK09580         14 KAILRGLNLEVRPGE----VHAIMGPNGSGKS-------TLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFM   82 (248)
T ss_pred             eeeeecceeEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEE
Confidence            469999999999999    8889999999999       9999999994  69999999999877542  22 2357999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHH-hc---CC---CCCChhHHHHHHHHHcCCC-ccccCcCC-CCChHHHHHHHHHHHHhC
Q psy860           88 CPQFNGINEHLTAQEMLECFSA-LR---GI---PGVKSGPIIDYWIDLLGLT-EYRHRVSG-RYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~-~~---~~---~~~~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGqkQRv~IAraL~~  158 (178)
                      ++|++.+++.+++.++..+... ..   ..   ......+.++++++.+++. +..++.+. +|||||||||+|||||+.
T Consensus        83 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~  162 (248)
T PRK09580         83 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL  162 (248)
T ss_pred             EecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc
Confidence            9999988887777665543211 11   10   1112234567888999995 56677775 799999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++|+|||||+|||+.++
T Consensus       163 ~p~illLDEPt~~LD~~~~  181 (248)
T PRK09580        163 EPELCILDESDSGLDIDAL  181 (248)
T ss_pred             CCCEEEEeCCCccCCHHHH
Confidence            9999999999999999754

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.98  E-value=3.4e-33  Score=246.66  Aligned_cols=155  Identities=17%  Similarity=0.102  Sum_probs=127.6

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~   81 (178)
                      |+|++.-  .++|+|+||+|++||    ..+|.|+||+|||       ||++.+.|+.+|++|+|.++|.++.+.  .++
T Consensus       338 f~y~~~~--~~il~~inl~i~~G~----~v~IvG~sGsGKS-------TLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~  404 (571)
T TIGR02203       338 FRYPGRD--RPALDSISLVIEPGE----TVALVGRSGSGKS-------TLVNLIPRFYEPDSGQILLDGHDLADYTLASL  404 (571)
T ss_pred             EEcCCCC--CccccCeeEEecCCC----EEEEECCCCCCHH-------HHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence            5664321  369999999999999    8889999999999       999999999999999999999988653  567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-------c----CCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-------V----SGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~----~~~LSgGqkQRv  150 (178)
                      ++.++||||++.+|. -|++||+.++.     ++....+++.++++.+++.+..++       .    -..||||||||+
T Consensus       405 ~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRi  478 (571)
T TIGR02203       405 RRQVALVSQDVVLFN-DTIANNIAYGR-----TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRL  478 (571)
T ss_pred             HhhceEEccCccccc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence            889999999998765 59999997541     112335567778888777543322       2    246999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +||||++.+|++++||||||+||+.+.
T Consensus       479 aLARall~~~~illLDEpts~LD~~~~  505 (571)
T TIGR02203       479 AIARALLKDAPILILDEATSALDNESE  505 (571)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHH
Confidence            999999999999999999999998764

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.98  E-value=9.8e-33  Score=243.60  Aligned_cols=144  Identities=16%  Similarity=0.140  Sum_probs=122.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+||||+|+.||    +.+|+|+||+|||       ||++++.|+.+|++|+|.+++.         ..+|||||++
T Consensus        20 ~~il~~vs~~i~~Ge----~~~iiG~NGsGKS-------TLlk~i~G~~~p~~G~i~~~~~---------~~i~~v~Q~~   79 (556)
T PRK11819         20 KQILKDISLSFFPGA----KIGVLGLNGAGKS-------TLLRIMAGVDKEFEGEARPAPG---------IKVGYLPQEP   79 (556)
T ss_pred             CeeeeCceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEecCC---------CEEEEEecCC
Confidence            579999999999999    8889999999999       9999999999999999977542         3699999999


Q ss_pred             CCCCCCCHHHHHHHHHH-h-------------cCCCC----------------------CChhHHHHHHHHHcCCCcccc
Q psy860           93 GINEHLTAQEMLECFSA-L-------------RGIPG----------------------VKSGPIIDYWIDLLGLTEYRH  136 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~-~-------------~~~~~----------------------~~~~~~~~~~l~~~~L~~~~~  136 (178)
                      .+++.+|+.|++.+... .             .....                      .+..+++.++++.+++.. .+
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~  158 (556)
T PRK11819         80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD  158 (556)
T ss_pred             CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence            99999999999976321 0             01110                      112456788999999964 78


Q ss_pred             CcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          137 RVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       137 ~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +++.+|||||||||+|||||+.+|++||||||||+||+.++
T Consensus       159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~  199 (556)
T PRK11819        159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESV  199 (556)
T ss_pred             CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHH
Confidence            99999999999999999999999999999999999999764

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.4e-33  Score=238.54  Aligned_cols=153  Identities=22%  Similarity=0.241  Sum_probs=131.6

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~   81 (178)
                      |.|++|.   ++++|+||++++|+    ..+|+|+||||||       |++..+.|+.+|+.|++.++|.+..++  ..+
T Consensus       328 ~~y~~g~---~~l~~l~~t~~~g~----~talvG~SGaGKS-------TLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~  393 (559)
T COG4988         328 FRYPDGK---PALSDLNLTIKAGQ----LTALVGASGAGKS-------TLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW  393 (559)
T ss_pred             EecCCCC---cccCCceeEecCCc----EEEEECCCCCCHH-------HHHHHHhCcCCCCCceEEECCccccccCHHHH
Confidence            6677776   89999999999999    8889999999999       999999999999999999999998875  568


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc------cCcCCC----CChHHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR------HRVSGR----YSGGNKRKLS  151 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~~~~~----LSgGqkQRv~  151 (178)
                      |++++||+|+|.+++ -|++||+.++.      ....++.+.++++..++.+..      |..+++    |||||+|||+
T Consensus       394 ~k~i~~v~Q~p~lf~-gTireNi~l~~------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRla  466 (559)
T COG4988         394 RKQISWVSQNPYLFA-GTIRENILLAR------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLA  466 (559)
T ss_pred             HhHeeeeCCCCcccc-ccHHHHhhccC------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHH
Confidence            899999999999875 49999998742      123356688888888876443      334554    9999999999


Q ss_pred             HHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          152 TAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       152 IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +||||..++++++|||||++||.++.
T Consensus       467 LARAll~~~~l~llDEpTA~LD~etE  492 (559)
T COG4988         467 LARALLSPASLLLLDEPTAHLDAETE  492 (559)
T ss_pred             HHHHhcCCCCEEEecCCccCCCHhHH
Confidence            99999999999999999999998763

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.97  E-value=4e-33  Score=203.72  Aligned_cols=131  Identities=24%  Similarity=0.284  Sum_probs=118.5

Q ss_pred             ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCCCC
Q psy860           16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQFNG   93 (178)
Q Consensus        16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~~~   93 (178)
                      |+||||+|++||    ..+|+|+||+|||       ||++.+.|..+|++|.+.+++.++..  ....++.++|++|++.
T Consensus         1 L~~v~~~i~~g~----~~~i~G~nGsGKS-------tLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~   69 (137)
T PF00005_consen    1 LKNVSLEIKPGE----IVAIVGPNGSGKS-------TLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQ   69 (137)
T ss_dssp             EEEEEEEEETTS----EEEEEESTTSSHH-------HHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHC
T ss_pred             CCceEEEEcCCC----EEEEEccCCCccc-------cceeeecccccccccccccccccccccccccccccccccccccc
Confidence            689999999999    8889999999999       99999999999999999999999876  4566789999999999


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcC----CCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS----GRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~----~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      +++.+|+.++             ...++++++++.+++.+..++.+    .+||+||||||+||+||+.+|++++|||||
T Consensus        70 ~~~~~tv~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt  136 (137)
T PF00005_consen   70 LFPGLTVREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT  136 (137)
T ss_dssp             HHTTSBHHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred             cccccccccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            9999999998             23456888899998877666666    999999999999999999999999999999


Q ss_pred             C
Q psy860          170 S  170 (178)
Q Consensus       170 ~  170 (178)
                      |
T Consensus       137 ~  137 (137)
T PF00005_consen  137 N  137 (137)
T ss_dssp             T
T ss_pred             C
Confidence            7

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.97  E-value=3.4e-33  Score=213.43  Aligned_cols=118  Identities=21%  Similarity=0.137  Sum_probs=106.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQFN   92 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q~~   92 (178)
                      ++++++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++... ..+++.++|+||++
T Consensus        16 ~~l~~i~~~i~~Ge----~~~i~G~nGsGKS-------tLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~   84 (178)
T cd03247          16 QVLKNLSLELKQGE----KIALLGRSGSGKS-------TLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRP   84 (178)
T ss_pred             cceEEEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCC
Confidence            69999999999999    7889999999999       999999999999999999999876543 34567899999998


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++ .|++||+                                  +.+||+|||||++|||||+.+|++++|||||+||
T Consensus        85 ~~~~-~tv~~~i----------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~L  129 (178)
T cd03247          85 YLFD-TTLRNNL----------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGL  129 (178)
T ss_pred             eeec-ccHHHhh----------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence            8775 6898886                                  6889999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       130 D~~~~  134 (178)
T cd03247         130 DPITE  134 (178)
T ss_pred             CHHHH
Confidence            98754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.1e-32  Score=242.09  Aligned_cols=145  Identities=16%  Similarity=0.078  Sum_probs=122.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+||||+|+.||    +.+|+|+||+|||       ||++++.|+.+|++|++.+++.         ..++|+||++
T Consensus        14 ~~il~~vsl~i~~Ge----~~~liG~NGsGKS-------TLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q~~   73 (530)
T PRK15064         14 KPLFENISVKFGGGN----RYGLIGANGCGKS-------TFMKILGGDLEPSAGNVSLDPN---------ERLGKLRQDQ   73 (530)
T ss_pred             cEeEeCCEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEecCC---------CEEEEEeccC
Confidence            479999999999999    8889999999999       9999999999999999988763         3599999999


Q ss_pred             CCCCCCCHHHHHHHHHH-----------hcCC---------------------CCCChhHHHHHHHHHcCCCcc-ccCcC
Q psy860           93 GINEHLTAQEMLECFSA-----------LRGI---------------------PGVKSGPIIDYWIDLLGLTEY-RHRVS  139 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~-----------~~~~---------------------~~~~~~~~~~~~l~~~~L~~~-~~~~~  139 (178)
                      .+++.+|+.|++.+...           ....                     ...+.++++.++++.+++.+. .++++
T Consensus        74 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~  153 (530)
T PRK15064         74 FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM  153 (530)
T ss_pred             CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch
Confidence            88899999999875321           0000                     011224567889999999764 45789


Q ss_pred             CCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          140 GRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       140 ~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus       154 ~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~  191 (530)
T PRK15064        154 SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTI  191 (530)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHH
Confidence            99999999999999999999999999999999999764

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.97  E-value=8.5e-33  Score=244.33  Aligned_cols=153  Identities=18%  Similarity=0.116  Sum_probs=125.0

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+++   .++|+||||++++||    ..||+|++|||||       |+++.+.|+..|++|+|.+||.++.+  ...+
T Consensus       336 f~y~~~---~~vl~~is~~i~~Ge----~vaiVG~sGsGKS-------Tl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l  401 (567)
T COG1132         336 FSYPGK---KPVLKDISFSIEPGE----KVAIVGPSGSGKS-------TLIKLLLRLYDPTSGEILIDGIDIRDISLDSL  401 (567)
T ss_pred             EEcCCC---CccccCceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence            556542   379999999999999    8889999999999       99999999999999999999999986  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-------ccccCcC----CCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-------EYRHRVS----GRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~~~~~~----~~LSgGqkQRv  150 (178)
                      |+.|++|||++.+|. -|++||+.++...      ...+++.++++..++.       +..|..+    ..||||||||+
T Consensus       402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~------at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrl  474 (567)
T COG1132         402 RKRIGIVSQDPLLFS-GTIRENIALGRPD------ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRL  474 (567)
T ss_pred             HHhccEEcccceeec-ccHHHHHhcCCCC------CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHH
Confidence            999999999999887 7999999874211      1233455554444322       2234444    47999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +||||++.+|++|+||||||+||+.+.
T Consensus       475 aiARall~~~~ILILDEaTSalD~~tE  501 (567)
T COG1132         475 AIARALLRNPPILILDEATSALDTETE  501 (567)
T ss_pred             HHHHHHhcCCCEEEEeccccccCHHhH
Confidence            999999999999999999999999763

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.97  E-value=5.6e-33  Score=244.49  Aligned_cols=147  Identities=23%  Similarity=0.191  Sum_probs=121.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+|+||++++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.+  ...+++.++||||
T Consensus       331 ~~~l~~~~~~i~~G~----~~~ivG~sGsGKS-------TL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q  399 (544)
T TIGR01842       331 KPTLRGISFRLQAGE----ALAIIGPSGSGKS-------TLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ  399 (544)
T ss_pred             ccccccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence            478999999999999    8889999999999       99999999999999999999998865  3567889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHH---------HHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDY---------WIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~---------~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++. |++||+.++.     + ....+++.+         .++.+  |++........+||||||||++||||++.+
T Consensus       400 ~~~lf~~-ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~  472 (544)
T TIGR01842       400 DVELFPG-TVAENIARFG-----E-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD  472 (544)
T ss_pred             Ccccccc-cHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence            9998865 9999997532     1 111222333         33444  444445556788999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++++||||||+||+.++
T Consensus       473 ~~ililDEpts~LD~~~~  490 (544)
T TIGR01842       473 PKLVVLDEPNSNLDEEGE  490 (544)
T ss_pred             CCEEEEeCCccccCHHHH
Confidence            999999999999998753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.97  E-value=4.4e-33  Score=242.34  Aligned_cols=154  Identities=14%  Similarity=0.141  Sum_probs=123.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-cccccccccccccc---HHhhccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-QAAQNSLLMTNIMH---LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-~~g~i~~~g~~~~~---~~~~~~~ig~v   88 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.++ ++|+|+++|+++..   ....+++++|+
T Consensus       273 ~~il~~vsl~i~~Ge----~~~i~G~NGsGKS-------TLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v  341 (490)
T PRK10938        273 RPILHNLSWQVNPGE----HWQIVGPNGAGKS-------TLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYV  341 (490)
T ss_pred             eeEEeeceEEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEE
Confidence            468999999999999    8889999999999       999999998775 69999999976521   23456789999


Q ss_pred             cCCCCCCCC--CCHHHHHHHHHHh----cCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           89 PQFNGINEH--LTAQEMLECFSAL----RGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        89 ~Q~~~l~~~--ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +|++.+++.  .++.+++.+....    ......+.+++++++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus       342 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~  421 (490)
T PRK10938        342 SSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPT  421 (490)
T ss_pred             CHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            998765443  4676665432110    11011123456889999999987 8899999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|||||||+|||+.++
T Consensus       422 lllLDEPt~gLD~~~~  437 (490)
T PRK10938        422 LLILDEPLQGLDPLNR  437 (490)
T ss_pred             EEEEcCccccCCHHHH
Confidence            9999999999999764

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.97  E-value=5.8e-33  Score=211.36  Aligned_cols=115  Identities=20%  Similarity=0.206  Sum_probs=105.1

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      ++++++||+|.+||    +.+|.|+||+|||       ||++.+.|+.+|++|++.++|.++..  ...+++.++|++|+
T Consensus        16 ~~l~~~~~~i~~Ge----~~~i~G~nGsGKS-------tLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   84 (173)
T cd03246          16 PVLRNVSFSIEPGE----SLAIIGPSGSGKS-------TLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQD   84 (173)
T ss_pred             cceeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCC
Confidence            59999999999999    7889999999999       99999999999999999999987754  33556789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++ .|++||+                                     ||||||||++|||||+.+|+++||||||+|
T Consensus        85 ~~~~~-~tv~~~l-------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~  126 (173)
T cd03246          85 DELFS-GSIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH  126 (173)
T ss_pred             Ccccc-CcHHHHC-------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence            98776 4999886                                     999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       127 LD~~~~  132 (173)
T cd03246         127 LDVEGE  132 (173)
T ss_pred             cCHHHH
Confidence            999764

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.97  E-value=5.7e-33  Score=246.36  Aligned_cols=153  Identities=15%  Similarity=0.121  Sum_probs=124.6

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~   81 (178)
                      |.|+.+   .++|+|||+++++||    ..+|+|+||+|||       ||++.+.|+.+|++|.+.++|.++.+.  ..+
T Consensus       342 f~y~~~---~~iL~~inl~i~~G~----~v~IvG~sGsGKS-------TLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~  407 (588)
T PRK13657        342 FSYDNS---RQGVEDVSFEAKPGQ----TVAIVGPTGAGKS-------TLINLLQRVFDPQSGRILIDGTDIRTVTRASL  407 (588)
T ss_pred             EEeCCC---CceecceeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCCEEEECCEEhhhCCHHHH
Confidence            566432   369999999999999    8889999999999       999999999999999999999988763  567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------cc----CcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RH----RVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~----~~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.++. -|++||+.++.     + ....+++.++++.+++.+.       .|    .....||||||||+
T Consensus       408 r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRi  480 (588)
T PRK13657        408 RRNIAVVFQDAGLFN-RSIEDNIRVGR-----P-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL  480 (588)
T ss_pred             HhheEEEecCccccc-ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHH
Confidence            889999999999875 59999997631     1 1123445666666665322       22    23346999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+.+|++++||||||+||+.+.
T Consensus       481 alARall~~~~iliLDEpts~LD~~t~  507 (588)
T PRK13657        481 AIARALLKDPPILILDEATSALDVETE  507 (588)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence            999999999999999999999998753

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.97  E-value=5.4e-33  Score=216.42  Aligned_cols=134  Identities=20%  Similarity=0.105  Sum_probs=111.2

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      ++|+++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|           +|+|+||++.
T Consensus        19 ~il~~~s~~i~~G~----~~~i~G~nG~GKS-------TLl~~i~G~~~~~~G~i~~~g-----------~i~~~~q~~~   76 (204)
T cd03250          19 FTLKDINLEVPKGE----LVAIVGPVGSGKS-------SLLSALLGELEKLSGSVSVPG-----------SIAYVSQEPW   76 (204)
T ss_pred             ceeeeeeEEECCCC----EEEEECCCCCCHH-------HHHHHHhCcCCCCCCeEEEcC-----------EEEEEecCch
Confidence            69999999999999    7889999999999       999999999999999999887           5999999998


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-----------CCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-----------LTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      ++ +.|++||+.+....   .    .+...+.++.++           +....++.+.+||+|||||++|||||+.+|++
T Consensus        77 l~-~~t~~enl~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l  148 (204)
T cd03250          77 IQ-NGTIRENILFGKPF---D----EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI  148 (204)
T ss_pred             hc-cCcHHHHhccCCCc---C----HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            77 57999999763211   1    112223333333           33345667899999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      ++|||||+|||+.++
T Consensus       149 lllDEP~~~LD~~~~  163 (204)
T cd03250         149 YLLDDPLSAVDAHVG  163 (204)
T ss_pred             EEEeCccccCCHHHH
Confidence            999999999999753

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.97  E-value=2e-32  Score=241.46  Aligned_cols=144  Identities=16%  Similarity=0.131  Sum_probs=120.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+||||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.+++         +..||||||++
T Consensus        18 ~~il~~is~~i~~Ge----~~~liG~NGsGKS-------TLl~~i~G~~~p~~G~i~~~~---------~~~i~~v~Q~~   77 (552)
T TIGR03719        18 KEILKDISLSFFPGA----KIGVLGLNGAGKS-------TLLRIMAGVDKEFNGEARPAP---------GIKVGYLPQEP   77 (552)
T ss_pred             CeeecCceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEecC---------CCEEEEEeccC
Confidence            469999999999999    8889999999999       999999999999999997764         23699999999


Q ss_pred             CCCCCCCHHHHHHHHHH-h-------------cCCCCCC----------------------hhHHHHHHHHHcCCCcccc
Q psy860           93 GINEHLTAQEMLECFSA-L-------------RGIPGVK----------------------SGPIIDYWIDLLGLTEYRH  136 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~-~-------------~~~~~~~----------------------~~~~~~~~l~~~~L~~~~~  136 (178)
                      .+++++|+.|++.+... .             ...+..+                      ..+++.++++.+++.. .+
T Consensus        78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~  156 (552)
T TIGR03719        78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WD  156 (552)
T ss_pred             CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-cc
Confidence            99999999999986321 0             0111111                      1235667788888854 68


Q ss_pred             CcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          137 RVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       137 ~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus       157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~  197 (552)
T TIGR03719       157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESV  197 (552)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHH
Confidence            89999999999999999999999999999999999999764

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.97  E-value=1e-32  Score=208.94  Aligned_cols=114  Identities=15%  Similarity=0.121  Sum_probs=102.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+++||+|.+||    +.+|.|+||+|||       ||++.+.|+.+|++|++.+++.         +.++|++|++
T Consensus        14 ~~~l~~i~l~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~q~~   73 (166)
T cd03223          14 RVLLKDLSFEIKPGD----RLLITGPSGTGKS-------SLFRALAGLWPWGSGRIGMPEG---------EDLLFLPQRP   73 (166)
T ss_pred             CeeeecCeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCC---------ceEEEECCCC
Confidence            369999999999999    8889999999999       9999999999999999988763         4799999998


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .++ ..|+.||+.+.                              .+.+||||||||++|||||+.+|++++|||||++|
T Consensus        74 ~~~-~~tv~~nl~~~------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~L  122 (166)
T cd03223          74 YLP-LGTLREQLIYP------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSAL  122 (166)
T ss_pred             ccc-cccHHHHhhcc------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcccc
Confidence            764 67999998642                              36889999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       123 D~~~~  127 (166)
T cd03223         123 DEESE  127 (166)
T ss_pred             CHHHH
Confidence            99764

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.97  E-value=1.6e-32  Score=261.81  Aligned_cols=152  Identities=18%  Similarity=0.211  Sum_probs=132.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC---cccccccccccccccHHhhccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP---FQAAQNSLLMTNIMHLFQYLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~---~~~g~i~~~g~~~~~~~~~~~~ig~v~   89 (178)
                      .++|+|||+++++||    +.+|+|+||+|||       ||++.+.|..+   +++|+|.++|+++..  +.++.+|||+
T Consensus       776 ~~iL~~vs~~i~~Ge----~~aI~G~sGaGKS-------TLL~~Lag~~~~g~~~~G~I~i~G~~~~~--~~~~~i~yv~  842 (1394)
T TIGR00956       776 RVILNNVDGWVKPGT----LTALMGASGAGKT-------TLLNVLAERVTTGVITGGDRLVNGRPLDS--SFQRSIGYVQ  842 (1394)
T ss_pred             cEeeeCCEEEEECCE----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcceeEEEECCEECCh--hhhcceeeec
Confidence            579999999999999    8889999999999       99999999976   788999999988742  4677899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcC---CCCCChhHHHHHHHHHcCCCccccCcCC----CCChHHHHHHHHHHHHhCCCC-
Q psy860           90 QFNGINEHLTAQEMLECFSALRG---IPGVKSGPIIDYWIDLLGLTEYRHRVSG----RYSGGNKRKLSTAMALIGDRD-  161 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~----~LSgGqkQRv~IAraL~~~P~-  161 (178)
                      |++.+++.+||+|++.+....+.   .+..+..++++++++.+++.+.+|+.++    .|||||||||+||+||+.+|+ 
T Consensus       843 Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~  922 (1394)
T TIGR00956       843 QQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKL  922 (1394)
T ss_pred             ccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCe
Confidence            99888899999999998765542   1222334578899999999999999887    799999999999999999997 


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|+|||||||||+.++
T Consensus       923 iLlLDEPTsgLD~~~~  938 (1394)
T TIGR00956       923 LLFLDEPTSGLDSQTA  938 (1394)
T ss_pred             EEEEcCCCCCCCHHHH
Confidence            9999999999998653

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.97  E-value=1.2e-32  Score=263.19  Aligned_cols=155  Identities=15%  Similarity=0.150  Sum_probs=127.9

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc--------------------
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF--------------------   63 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~--------------------   63 (178)
                      |.|+++- ..++|+||||+|++|+    ..||+|++|||||       |+++.+.|+..|                    
T Consensus      1173 F~Y~~~~-~~~vL~~lsl~i~~G~----~vAIVG~SGsGKS-------Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265       1173 FRYISRP-NVPIYKDLTFSCDSKK----TTAIVGETGSGKS-------TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred             EECCCCC-CCccccCeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHHHhCCCcccccccccccccccccccc
Confidence            6786432 2479999999999999    8899999999999       999999999887                    


Q ss_pred             ----------------------------------cccccccccccccc--HHhhccceEEecCCCCCCCCCCHHHHHHHH
Q psy860           64 ----------------------------------QAAQNSLLMTNIMH--LFQYLSGIGYCPQFNGINEHLTAQEMLECF  107 (178)
Q Consensus        64 ----------------------------------~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~  107 (178)
                                                        ++|+|.++|.++.+  ...+|+.|+||+|++.+| +.|++||+.++
T Consensus      1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g 1319 (1466)
T PTZ00265       1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFG 1319 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcC
Confidence                                              69999999999976  467899999999999986 67999999874


Q ss_pred             HHhcCCCCCChhHHHHHHHHHcCCCc-------cccCcC----CCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          108 SALRGIPGVKSGPIIDYWIDLLGLTE-------YRHRVS----GRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~~L~~-------~~~~~~----~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      .     + ....+.+.++++..++.+       ..|..+    ..||||||||++|||||+.+|++||||||||+||+.+
T Consensus      1320 ~-----~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265       1320 K-----E-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred             C-----C-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence            1     1 123455777777766543       223333    4699999999999999999999999999999999876


Q ss_pred             C
Q psy860          177 T  177 (178)
Q Consensus       177 ~  177 (178)
                      .
T Consensus      1394 E 1394 (1466)
T PTZ00265       1394 E 1394 (1466)
T ss_pred             H
Confidence            3

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.7e-32  Score=239.50  Aligned_cols=140  Identities=17%  Similarity=0.163  Sum_probs=121.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|+.||    +.+|+|+||+|||       ||++++.|+.+|++|.|.+++.         +.+||+||++
T Consensus       332 ~~~l~~is~~i~~Ge----~~~l~G~NGsGKS-------TLl~~i~G~~~p~~G~i~~~~~---------~~i~~~~q~~  391 (530)
T PRK15064        332 GPLFKNLNLLLEAGE----RLAIIGENGVGKT-------TLLRTLVGELEPDSGTVKWSEN---------ANIGYYAQDH  391 (530)
T ss_pred             ceeecCcEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCc---------eEEEEEcccc
Confidence            469999999999999    7889999999999       9999999999999999987763         3699999986


Q ss_pred             C--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           93 G--INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        93 ~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      .  +++.+|+.+++.++.   .  ..+..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       392 ~~~~~~~~t~~~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt  466 (530)
T PRK15064        392 AYDFENDLTLFDWMSQWR---Q--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT  466 (530)
T ss_pred             cccCCCCCcHHHHHHHhc---c--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            4  566799999886431   1  122345688999999995 6789999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       467 ~~LD~~~~  474 (530)
T PRK15064        467 NHMDMESI  474 (530)
T ss_pred             CCCCHHHH
Confidence            99999764

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.97  E-value=1.8e-32  Score=242.33  Aligned_cols=155  Identities=17%  Similarity=0.160  Sum_probs=125.6

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+.+- ..++|+|+||++++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.+  ...+
T Consensus       345 f~y~~~~-~~~iL~~inl~i~~Ge----~i~IvG~sGsGKS-------TLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~  412 (576)
T TIGR02204       345 FAYPARP-DQPALDGLNLTVRPGE----TVALVGPSGAGKS-------TLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL  412 (576)
T ss_pred             EECCCCC-CCccccceeEEecCCC----EEEEECCCCCCHH-------HHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence            5564321 1469999999999999    8889999999999       99999999999999999999998875  4567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-----------cCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-----------HRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv  150 (178)
                      ++.++|+||++.++ +-|++||+.++.     + ....+++.++++.+++.+..           ......||||||||+
T Consensus       413 ~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~-----~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl  485 (576)
T TIGR02204       413 RARMALVPQDPVLF-AASVMENIRYGR-----P-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI  485 (576)
T ss_pred             HHhceEEccCCccc-cccHHHHHhcCC-----C-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence            88999999999876 459999997631     1 12245566777776654222           223456999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +||||++.+|++++||||||+||+.++
T Consensus       486 ~laRal~~~~~ililDEpts~lD~~~~  512 (576)
T TIGR02204       486 AIARAILKDAPILLLDEATSALDAESE  512 (576)
T ss_pred             HHHHHHHhCCCeEEEeCcccccCHHHH
Confidence            999999999999999999999999763

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=6.6e-33  Score=211.62  Aligned_cols=154  Identities=23%  Similarity=0.186  Sum_probs=135.5

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc-cccccHHh---hccce
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM-TNIMHLFQ---YLSGI   85 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g-~~~~~~~~---~~~~i   85 (178)
                      +|.-.|++++||.|..||    ..+|+||||+||+       |++-.+.|..+|+.|+++++| .++....+   .|.+|
T Consensus        15 F~GF~Aln~ls~~v~~Ge----lr~lIGpNGAGKT-------T~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI   83 (249)
T COG4674          15 FGGFKALNDLSFSVDPGE----LRVLIGPNGAGKT-------TLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI   83 (249)
T ss_pred             EcceeeeeeeEEEecCCe----EEEEECCCCCCce-------eeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence            344589999999999999    8889999999999       999999999999999999999 67766433   46789


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHH--------HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh
Q psy860           86 GYCPQFNGINEHLTAQEMLECFS--------ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~~--------~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      |--||.|.+|+++||+||+....        .++.....+.+++++++|+..+|.+.+++.+..||.||||++.|++.++
T Consensus        84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~  163 (249)
T COG4674          84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA  163 (249)
T ss_pred             CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence            99999999999999999998743        2333334556778999999999999999999999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNL  174 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~  174 (178)
                      ++|++|++|||++|+--
T Consensus       164 Q~P~lLLlDEPvAGMTd  180 (249)
T COG4674         164 QDPKLLLLDEPVAGMTD  180 (249)
T ss_pred             cCCcEEEecCccCCCcH
Confidence            99999999999999843

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.97  E-value=1.8e-32  Score=242.49  Aligned_cols=154  Identities=17%  Similarity=0.128  Sum_probs=124.9

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+.+  ..++|+++||++++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.++|.++.+  ...+
T Consensus       321 ~~y~~~--~~~~l~~i~~~i~~G~----~~~ivG~sGsGKS-------TLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~  387 (569)
T PRK10789        321 FTYPQT--DHPALENVNFTLKPGQ----MLGICGPTGSGKS-------TLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSW  387 (569)
T ss_pred             EECCCC--CCccccCeeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCCEEEECCEEHhhCCHHHH
Confidence            456432  2469999999999999    8889999999999       99999999999999999999998765  4567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-----------cccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-----------YRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv  150 (178)
                      |+.++|+||++.++.. |++||+.++.     + ....+++.++++..++.+           ..+.....||||||||+
T Consensus       388 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi  460 (569)
T PRK10789        388 RSRLAVVSQTPFLFSD-TVANNIALGR-----P-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI  460 (569)
T ss_pred             HhheEEEccCCeeccc-cHHHHHhcCC-----C-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence            8899999999998864 9999997631     1 112344556666665532           22344567999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+.+|++++||||||+||+.+.
T Consensus       461 ~lARall~~~~illlDEpts~LD~~~~  487 (569)
T PRK10789        461 SIARALLLNAEILILDDALSAVDGRTE  487 (569)
T ss_pred             HHHHHHhcCCCEEEEECccccCCHHHH
Confidence            999999999999999999999998753

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.97  E-value=4.7e-33  Score=218.77  Aligned_cols=155  Identities=18%  Similarity=0.188  Sum_probs=131.4

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--H-HhhccceEEe
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--L-FQYLSGIGYC   88 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~-~~~~~~ig~v   88 (178)
                      ..++|++||++|+.||    =++|+|+||+|||       ||++.+.+-.+|++|.+.+.|+....  . .++|++||+|
T Consensus        43 gk~iL~~isW~V~~ge----~W~I~G~NGsGKT-------TLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~v  111 (257)
T COG1119          43 GKKILGDLSWQVNPGE----HWAIVGPNGAGKT-------TLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV  111 (257)
T ss_pred             CEeeccccceeecCCC----cEEEECCCCCCHH-------HHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCcc
Confidence            3689999999999999    6779999999999       99999999999999999999998753  3 7899999999


Q ss_pred             cCC--CCCCCCCCHHHHHHH--HHHhcC---CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           89 PQF--NGINEHLTAQEMLEC--FSALRG---IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        89 ~Q~--~~l~~~ltv~e~l~~--~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      ...  ..+.++.+|+|.+.-  +..+..   ....+..+++..+++.+++.+.++++..+||-||||||.|||||+.+|+
T Consensus       112 S~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~  191 (257)
T COG1119         112 SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPE  191 (257)
T ss_pred             CHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCC
Confidence            864  345567788887753  322221   1223445678899999999999999999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|||||||+|||..++
T Consensus       192 LLiLDEP~~GLDl~~r  207 (257)
T COG1119         192 LLILDEPAQGLDLIAR  207 (257)
T ss_pred             EEEecCccccCChHHH
Confidence            9999999999998765

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.97  E-value=3.5e-32  Score=240.10  Aligned_cols=144  Identities=11%  Similarity=0.091  Sum_probs=122.0

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      ..++|+||||+|..||    +.+|+|+||+|||       ||++.+.|+.+|++|+|++++ +.        .+||+||+
T Consensus       336 ~~~~l~~isl~i~~Ge----~~~l~G~NGsGKS-------TLl~~i~G~~~p~~G~i~~~~-~~--------~i~~v~q~  395 (556)
T PRK11819        336 DRLLIDDLSFSLPPGG----IVGIIGPNGAGKS-------TLFKMITGQEQPDSGTIKIGE-TV--------KLAYVDQS  395 (556)
T ss_pred             CeeeecceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECC-ce--------EEEEEeCc
Confidence            3469999999999999    7889999999999       999999999999999998743 21        59999999


Q ss_pred             C-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           92 N-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        92 ~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      + .+++.+|+.|++.+.........  ....+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       396 ~~~~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  473 (556)
T PRK11819        396 RDALDPNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT  473 (556)
T ss_pred             hhhcCCCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            6 68889999999987543222211  1234567899999974 679999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       474 ~~LD~~~~  481 (556)
T PRK11819        474 NDLDVETL  481 (556)
T ss_pred             CCCCHHHH
Confidence            99999764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.97  E-value=4e-32  Score=225.93  Aligned_cols=152  Identities=18%  Similarity=0.174  Sum_probs=134.0

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceE
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIG   86 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig   86 (178)
                      ...|+++|||+++.||.    .+|+|.+|||||       |+-..++++.+++ |+|.++|+++...     ..+|+.+-
T Consensus       299 ~~~AVd~isl~L~~gqT----lGlVGESGSGKs-------TlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQ  366 (534)
T COG4172         299 HLRAVDGISLTLRRGQT----LGLVGESGSGKS-------TLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQ  366 (534)
T ss_pred             heEEeccceeEecCCCe----EEEEecCCCCcc-------hHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhce
Confidence            35799999999999994    559999999999       8888999998876 9999999998753     45788999


Q ss_pred             EecCCC--CCCCCCCHHHHHHHHHHhcC--CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           87 YCPQFN--GINEHLTAQEMLECFSALRG--IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        87 ~v~Q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +|||+|  .+.|.+||.+.+........  .+..+..+++.++|+.+||+ +..+++|+++|||||||++||||++.+|+
T Consensus       367 vVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~  446 (534)
T COG4172         367 VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPE  446 (534)
T ss_pred             EEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCc
Confidence            999998  59999999999988766643  45556667899999999997 67899999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLY  175 (178)
Q Consensus       162 ~lllDEPt~gLD~~  175 (178)
                      +++||||||+||..
T Consensus       447 ~i~LDEPTSALD~S  460 (534)
T COG4172         447 LILLDEPTSALDRS  460 (534)
T ss_pred             EEEecCCchHhhHH
Confidence            99999999999965

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.97  E-value=1.9e-32  Score=208.16  Aligned_cols=115  Identities=20%  Similarity=0.194  Sum_probs=104.3

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      +++++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|+++..  ...+++.++|+||+
T Consensus        16 ~~l~~i~~~i~~G~----~~~l~G~nGsGKs-------tLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~   84 (171)
T cd03228          16 PVLKDVSLTIKPGE----KVAIVGPSGSGKS-------TLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQD   84 (171)
T ss_pred             ccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCC
Confidence            68999999999999    7889999999999       99999999999999999999987754  23456789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+++ .|+.||+                                     ||+||||||+|||||+.+|++++|||||+|
T Consensus        85 ~~~~~-~t~~e~l-------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g  126 (171)
T cd03228          85 PFLFS-GTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA  126 (171)
T ss_pred             chhcc-chHHHHh-------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence            87765 5888886                                     999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       127 LD~~~~  132 (171)
T cd03228         127 LDPETE  132 (171)
T ss_pred             CCHHHH
Confidence            998764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0059|consensus

Probab=99.97  E-value=1.7e-32  Score=252.55  Aligned_cols=153  Identities=29%  Similarity=0.445  Sum_probs=143.9

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEecCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCPQF   91 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~Q~   91 (178)
                      |++++|+.|+.||    +-++.|+||+|||       |+++++.|..+|++|++++.|.++..   ..+.++.+|||||.
T Consensus       580 Av~~ls~~V~~ge----cfgLLG~NGAGKt-------T~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~  648 (885)
T KOG0059|consen  580 AVRGLSFAVPPGE----CFGLLGVNGAGKT-------TTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQF  648 (885)
T ss_pred             hhcceEEEecCCc----eEEEecCCCCCch-------hhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCch
Confidence            8999999999999    4459999999999       88999999999999999999998864   23478899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      ..+.+.+|.+|++.++++.+|++..+.++.+++.++.+++.++++++++.+|||||+|+++|.|++.+|++++|||||+|
T Consensus       649 d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstG  728 (885)
T KOG0059|consen  649 DALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTG  728 (885)
T ss_pred             hhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCC
Confidence            99999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          172 QNLYNTT  178 (178)
Q Consensus       172 LD~~~~~  178 (178)
                      +||.+||
T Consensus       729 mDP~arr  735 (885)
T KOG0059|consen  729 LDPKARR  735 (885)
T ss_pred             CCHHHHH
Confidence            9998875

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.97  E-value=4.7e-32  Score=218.28  Aligned_cols=146  Identities=12%  Similarity=0.033  Sum_probs=118.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++..  ..++++.++|+||
T Consensus        34 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q  102 (257)
T cd03288          34 KPVLKHVKAYIKPGQ----KVGICGRTGSGKS-------SLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQ  102 (257)
T ss_pred             CcceeEEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECC
Confidence            369999999999999    8889999999999       99999999999999999999988754  3456778999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHH---------HHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDY---------WIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~---------~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++ .|+++|+....       ....+.+.+         +++.+  ++....++.+.+||+|||||++|||||+.+
T Consensus       103 ~~~l~~-~tv~~nl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  174 (257)
T cd03288         103 DPILFS-GSIRFNLDPEC-------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK  174 (257)
T ss_pred             CCcccc-cHHHHhcCcCC-------CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence            998776 59998874311       001122233         33333  455555667789999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |+++||||||+|||+.++
T Consensus       175 p~llllDEPt~gLD~~~~  192 (257)
T cd03288         175 SSILIMDEATASIDMATE  192 (257)
T ss_pred             CCEEEEeCCccCCCHHHH
Confidence            999999999999999753

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.97  E-value=7.8e-33  Score=211.90  Aligned_cols=120  Identities=20%  Similarity=0.240  Sum_probs=107.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+++||++.+||    ..+|.|+||+|||       ||++.+.|+.+|++|++.++|.++..  ..++++.++|+||
T Consensus        12 ~~~l~~~~~~i~~G~----~~~l~G~nGsGKS-------tLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q   80 (180)
T cd03214          12 RTVLDDLSLSIEAGE----IVGILGPNGAGKS-------TLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ   80 (180)
T ss_pred             eeeEeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence            469999999999999    7889999999999       99999999999999999999987753  2345567888888


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                                                        +++.+++.+..++.+.+||+|||||++|||||+.+|++++|||||+
T Consensus        81 ----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~  126 (180)
T cd03214          81 ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTS  126 (180)
T ss_pred             ----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence                                              6778888877888999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       127 ~LD~~~~  133 (180)
T cd03214         127 HLDIAHQ  133 (180)
T ss_pred             CCCHHHH
Confidence            9998764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.97  E-value=2.9e-32  Score=231.11  Aligned_cols=158  Identities=14%  Similarity=0.016  Sum_probs=139.7

Q ss_pred             hccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--cHH-hhccc
Q psy860            8 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--HLF-QYLSG   84 (178)
Q Consensus         8 ~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~~~-~~~~~   84 (178)
                      +.+|.+.|.+||||+|++||    +-||+|.||+|||       ||++++.|+.+|++|+|.++|+++.  .+. ..+.+
T Consensus        12 K~f~~~~And~V~l~v~~Ge----IHaLLGENGAGKS-------TLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G   80 (501)
T COG3845          12 KRFPGVVANDDVSLSVKKGE----IHALLGENGAGKS-------TLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG   80 (501)
T ss_pred             EEcCCEEecCceeeeecCCc----EEEEeccCCCCHH-------HHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence            45566799999999999999    6779999999999       9999999999999999999999864  444 45789


Q ss_pred             eEEecCCCCCCCCCCHHHHHHHHHHh---cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           85 IGYCPQFNGINEHLTAQEMLECFSAL---RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        85 ig~v~Q~~~l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      ||+|+|++.+++++||.||+.+...-   ......+.+++++++.+.+|+.-..++++.+||=|+||||.|-+||..+|+
T Consensus        81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~  160 (501)
T COG3845          81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGAR  160 (501)
T ss_pred             CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCC
Confidence            99999999999999999999885432   234455677889999999999988899999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYN  176 (178)
Q Consensus       162 ~lllDEPt~gLD~~~  176 (178)
                      +|||||||+-|-|..
T Consensus       161 iLILDEPTaVLTP~E  175 (501)
T COG3845         161 LLILDEPTAVLTPQE  175 (501)
T ss_pred             EEEEcCCcccCCHHH
Confidence            999999999987753

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.97  E-value=2.8e-32  Score=246.04  Aligned_cols=154  Identities=16%  Similarity=0.121  Sum_probs=125.4

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+++.  .++|+|+||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+  ..++
T Consensus       463 f~y~~~~--~~il~~i~l~i~~G~----~vaivG~sGsGKS-------TL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~  529 (694)
T TIGR01846       463 FRYAPDS--PEVLSNLNLDIKPGE----FIGIVGPSGSGKS-------TLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL  529 (694)
T ss_pred             EEcCCCC--ccccccceEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEehhhCCHHHH
Confidence            5664332  368999999999999    8889999999999       99999999999999999999999876  4577


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-----------cccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-----------YRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv  150 (178)
                      |+.++||||++.+++ -|++||+.+..     + ....+.+.++++..++.+           .......+||||||||+
T Consensus       530 r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri  602 (694)
T TIGR01846       530 RRQMGVVLQENVLFS-RSIRDNIALCN-----P-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI  602 (694)
T ss_pred             HHhCeEEccCCeehh-hhHHHHHhcCC-----C-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence            889999999998775 59999997631     1 122344555566555432           23344568999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+.+|+++|||||||+||+.+.
T Consensus       603 ~lARall~~~~ililDEpts~LD~~~~  629 (694)
T TIGR01846       603 AIARALVGNPRILIFDEATSALDYESE  629 (694)
T ss_pred             HHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence            999999999999999999999998753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.97  E-value=5.1e-32  Score=238.87  Aligned_cols=143  Identities=10%  Similarity=0.101  Sum_probs=121.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|.|++++ +.        .|||+||++
T Consensus       335 ~~~l~~isl~i~~Ge----~~~l~G~NGsGKS-------TLl~~l~G~~~p~~G~i~~~~-~~--------~i~~v~q~~  394 (552)
T TIGR03719       335 KLLIDDLSFKLPPGG----IVGVIGPNGAGKS-------TLFRMITGQEQPDSGTIKIGE-TV--------KLAYVDQSR  394 (552)
T ss_pred             eeeeccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCeEEEECC-ce--------EEEEEeCCc
Confidence            469999999999999    8889999999999       999999999999999998743 21        599999996


Q ss_pred             -CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           93 -GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        93 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                       .+++.+|+.|++.+.........  ....+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus       395 ~~~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~  472 (552)
T TIGR03719       395 DALDPNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN  472 (552)
T ss_pred             cccCCCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence             47888999999987543222221  1234667899999974 5799999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       473 ~LD~~~~  479 (552)
T TIGR03719       473 DLDVETL  479 (552)
T ss_pred             CCCHHHH
Confidence            9998764

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>KOG0057|consensus

Probab=99.97  E-value=2.5e-32  Score=233.68  Aligned_cols=144  Identities=19%  Similarity=0.126  Sum_probs=121.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      ++|++|||+|++||    -+||+|.||||||       |+++.+.++.. .+|.|.+||.++..  ...+|+-||||||+
T Consensus       366 ~iL~gvsf~I~kGe----kVaIvG~nGsGKS-------Tilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd  433 (591)
T KOG0057|consen  366 KVLKGVSFTIPKGE----KVAIVGSNGSGKS-------TILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD  433 (591)
T ss_pred             ceecceeEEecCCC----EEEEECCCCCCHH-------HHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence            69999999999999    7889999999999       99999999988 99999999999976  46789999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-----------CcCCCCChHHHHHHHHHHHHhCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-----------RVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      ..+| +-|+.+|+.+..     + ....+++.++.++.++.+.-.           .+-..|||||||||+||||++.+|
T Consensus       434 ~~LF-ndTIl~NI~YGn-----~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda  506 (591)
T KOG0057|consen  434 SVLF-NDTILYNIKYGN-----P-SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA  506 (591)
T ss_pred             cccc-chhHHHHhhcCC-----C-CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence            8876 569999997532     1 223456777778877754222           234469999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~  176 (178)
                      ++++||||||.||-.+
T Consensus       507 ~Il~~DEaTS~LD~~T  522 (591)
T KOG0057|consen  507 PILLLDEATSALDSET  522 (591)
T ss_pred             CeEEecCcccccchhh
Confidence            9999999999999765

>PRK13409 putative ATPase RIL; Provisional

Probab=99.97  E-value=7.3e-32  Score=239.13  Aligned_cols=136  Identities=15%  Similarity=0.105  Sum_probs=120.3

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI   94 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l   94 (178)
                      .|+++||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++           ..++|+||++.+
T Consensus       354 ~l~~~s~~i~~Ge----iv~l~G~NGsGKS-------TLlk~L~Gl~~p~~G~I~~~-----------~~i~y~~Q~~~~  411 (590)
T PRK13409        354 SLEVEGGEIYEGE----VIGIVGPNGIGKT-------TFAKLLAGVLKPDEGEVDPE-----------LKISYKPQYIKP  411 (590)
T ss_pred             EEEecceEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEEe-----------eeEEEecccccC
Confidence            4899999999999    7889999999999       99999999999999999764           159999999888


Q ss_pred             CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860           95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus        95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                      ++++||.|++.+.....  .   ....+.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus       412 ~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~  486 (590)
T PRK13409        412 DYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV  486 (590)
T ss_pred             CCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence            88999999998642211  1   123578899999999889999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy860          175 YNT  177 (178)
Q Consensus       175 ~~~  177 (178)
                      .++
T Consensus       487 ~~~  489 (590)
T PRK13409        487 EQR  489 (590)
T ss_pred             HHH
Confidence            764

>KOG0055|consensus

Probab=99.97  E-value=4e-32  Score=249.79  Aligned_cols=155  Identities=20%  Similarity=0.137  Sum_probs=130.0

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.||++- ..++|+|+|++|++|+    -.||+||+|||||       |++..+-++..|++|.|.+||.++++  ++.+
T Consensus       995 F~YPsRP-~~~Il~~l~l~i~~Gq----TvALVG~SGsGKS-------TvI~LLeRfYdp~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen  995 FAYPTRP-DVPVLNNLSLSIRAGQ----TVALVGPSGSGKS-------TVISLLERFYDPDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred             eeCCCCC-CchhhcCCcEEecCCC----EEEEECCCCCCHH-------HHHHHHHHhcCCCCCeEEECCcccccCCHHHH
Confidence            7897655 4589999999999999    8899999999999       88899999999999999999999986  5778


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-------CCCccccCcCC----CCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-------GLTEYRHRVSG----RYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~L~~~~~~~~~----~LSgGqkQRv  150 (178)
                      |++||.|.|+|.|| +-|++||+.++  .   .. ...+.+.++++..       +|++.-|..++    +||||||||+
T Consensus      1063 R~~i~lVsQEP~LF-~~TIrENI~YG--~---~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRI 1135 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLF-NGTIRENIAYG--S---EE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRI 1135 (1228)
T ss_pred             HHhcceeccCchhh-cccHHHHHhcc--C---CC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHH
Confidence            99999999999986 57999999876  1   11 2234455555543       34555555554    8999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +||||++.||++|+|||.||+||.++.
T Consensus      1136 AIARAilRnPkILLLDEATSALDseSE 1162 (1228)
T KOG0055|consen 1136 AIARAILRNPKILLLDEATSALDSESE 1162 (1228)
T ss_pred             HHHHHHHcCCCeeeeeccchhhhhhhH
Confidence            999999999999999999999998764

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.97  E-value=8.4e-32  Score=238.93  Aligned_cols=153  Identities=15%  Similarity=0.090  Sum_probs=122.6

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+++   .++++|+||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+  ...+
T Consensus       342 ~~y~~~---~~~l~~i~~~i~~G~----~~~ivG~sGsGKS-------TL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~  407 (585)
T TIGR01192       342 FEFANS---SQGVFDVSFEAKAGQ----TVAIVGPTGAGKT-------TLINLLQRVYDPTVGQILIDGIDINTVTRESL  407 (585)
T ss_pred             EECCCC---CccccceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHccCCCCCCCEEEECCEEhhhCCHHHH
Confidence            456432   368999999999999    8889999999999       99999999999999999999998765  3567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-----------CCCccccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-----------GLTEYRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv  150 (178)
                      ++.++||||++.++. .|++||+.++.     +. ...+.+.++++..           |++.........||||||||+
T Consensus       408 ~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl  480 (585)
T TIGR01192       408 RKSIATVFQDAGLFN-RSIRENIRLGR-----EG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL  480 (585)
T ss_pred             HhheEEEccCCccCc-ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence            889999999998875 69999997642     11 1122233333333           333334456778999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||+.+|++++||||||+||+.++
T Consensus       481 ~lARall~~p~ililDEpts~LD~~~~  507 (585)
T TIGR01192       481 AIARAILKNAPILVLDEATSALDVETE  507 (585)
T ss_pred             HHHHHHhcCCCEEEEECCccCCCHHHH
Confidence            999999999999999999999998754

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.97  E-value=8.1e-32  Score=211.61  Aligned_cols=139  Identities=14%  Similarity=0.045  Sum_probs=114.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccc-ccccccccHHhhccceEEecCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNS-LLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~-~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      ++|+||||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|++. +++..+           .+.+.+
T Consensus         1 ~vl~~vs~~i~~Ge----~~~l~G~NGsGKS-------TLlk~i~Gl~~~~sG~i~~~~~~~~-----------~~~~~~   58 (213)
T PRK15177          1 VVLDKTDFVMGYHE----HIGILAAPGSGKT-------TLTRLLCGLDAPDEGDFIGLRGDAL-----------PLGANS   58 (213)
T ss_pred             CeeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCccCCCCCEEEecCcee-----------cccccc
Confidence            47999999999999    8889999999999       999999999999999985 555422           123456


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|+.||+.++....+..   ..+....+.+.+++.+..++++.+||+|||||++|||||+.+|+++||||||+++
T Consensus        59 ~l~~~ltv~enl~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~l  135 (213)
T PRK15177         59 FILPGLTGEENARMMASLYGLD---GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTG  135 (213)
T ss_pred             ccCCcCcHHHHHHHHHHHcCCC---HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccC
Confidence            7888999999999876554432   1222334456678888889999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       136 D~~~~  140 (213)
T PRK15177        136 DNATQ  140 (213)
T ss_pred             CHHHH
Confidence            98753

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.97  E-value=5.5e-32  Score=234.56  Aligned_cols=143  Identities=18%  Similarity=0.153  Sum_probs=120.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++|+    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|.+.           ++.+.+
T Consensus        37 ~~IL~nVSfsI~~GE----ivgIiGpNGSGKS-------TLLkiLaGLl~P~sGeI~I~G~~~-----------~i~~~~   94 (549)
T PRK13545         37 HYALNNISFEVPEGE----IVGIIGLNGSGKS-------TLSNLIAGVTMPNKGTVDIKGSAA-----------LIAISS   94 (549)
T ss_pred             ceEEeeeEEEEeCCC----EEEEEcCCCCCHH-------HHHHHHhCCCCCCceEEEECCEee-----------eEEecc
Confidence            368999999999999    8889999999999       999999999999999999988641           122234


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+.+.+|++|++.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus        95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL  174 (549)
T PRK13545         95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG  174 (549)
T ss_pred             ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence            56677899999987544333333334456778999999998899999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       175 D~~sr  179 (549)
T PRK13545        175 DQTFT  179 (549)
T ss_pred             CHHHH
Confidence            99753

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.97  E-value=3.3e-32  Score=239.78  Aligned_cols=149  Identities=16%  Similarity=0.078  Sum_probs=123.0

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+.+   .++|+|+||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+  ...+
T Consensus       330 f~y~~~---~~~l~~i~~~i~~G~----~~aivG~sGsGKS-------TL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~  395 (547)
T PRK10522        330 FAYQDN---GFSVGPINLTIKRGE----LLFLIGGNGSGKS-------TLAMLLTGLYQPQSGEILLDGKPVTAEQPEDY  395 (547)
T ss_pred             EEeCCC---CeEEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEECCCCCHHHH
Confidence            566532   369999999999999    8889999999999       99999999999999999999998875  4577


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCc-----CCCCChHHHHHHHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRV-----SGRYSGGNKRKLSTAMAL  156 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqkQRv~IAraL  156 (178)
                      ++.++||||++.+++ .|+++|        +  .....+.+.++++.+++....+..     -.+||||||||++||||+
T Consensus       396 ~~~i~~v~q~~~lf~-~ti~~n--------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal  464 (547)
T PRK10522        396 RKLFSAVFTDFHLFD-QLLGPE--------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL  464 (547)
T ss_pred             hhheEEEecChhHHH-Hhhccc--------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence            889999999988765 356655        1  122345677888888886543221     358999999999999999


Q ss_pred             hCCCCeEEeeCCCCCCCCCCC
Q psy860          157 IGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       157 ~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +.+|++|+||||||+||+.+.
T Consensus       465 ~~~~~ililDE~ts~LD~~~~  485 (547)
T PRK10522        465 AEERDILLLDEWAADQDPHFR  485 (547)
T ss_pred             hcCCCEEEEECCCCCCCHHHH
Confidence            999999999999999998753

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.97  E-value=6.5e-32  Score=242.38  Aligned_cols=144  Identities=13%  Similarity=0.068  Sum_probs=119.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+|+||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|++.+++         ++.++||||++
T Consensus       465 ~~il~~isl~i~~Ge----~~~IvG~nGsGKS-------TLl~lL~Gl~~~~~G~i~~~~---------~~~i~~v~Q~~  524 (659)
T TIGR00954       465 DVLIESLSFEVPSGN----HLLICGPNGCGKS-------SLFRILGELWPVYGGRLTKPA---------KGKLFYVPQRP  524 (659)
T ss_pred             CeeeecceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCeEeecC---------CCcEEEECCCC
Confidence            369999999999999    7889999999999       999999999999999987643         45799999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCCccccCcC---------CCCChHHHHHHHHHHHHhCCCCe
Q psy860           93 GINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLTEYRHRVS---------GRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      .+++. |++||+.+....... ......+++.++++.+++.+..+++.         .+||||||||++|||||+++|++
T Consensus       525 ~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i  603 (659)
T TIGR00954       525 YMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF  603 (659)
T ss_pred             CCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE
Confidence            88776 999999764221111 11123456788999999987666543         78999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      +||||||++||+.++
T Consensus       604 llLDEpts~LD~~~~  618 (659)
T TIGR00954       604 AILDECTSAVSVDVE  618 (659)
T ss_pred             EEEeCCccCCCHHHH
Confidence            999999999998753

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.97  E-value=1.2e-31  Score=216.09  Aligned_cols=146  Identities=16%  Similarity=0.141  Sum_probs=122.1

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccc-----------ccccccccHH-hh
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNS-----------LLMTNIMHLF-QY   81 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~-----------~~g~~~~~~~-~~   81 (178)
                      .+++|||+ +++||    +.+|+|+||+|||       ||++.+.|+.+|++|+++           ++|.++.... +.
T Consensus        15 ~~l~~i~~-i~~Ge----~~~IvG~nGsGKS-------TLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~   82 (255)
T cd03236          15 FKLHRLPV-PREGQ----VLGLVGPNGIGKS-------TALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL   82 (255)
T ss_pred             hhhhcCCC-CCCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence            69999995 99999    7889999999999       999999999999999995           7787765432 22


Q ss_pred             c---cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           82 L---SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        82 ~---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +   ..++|++|+..+++. ++.+++....     ......+.+.++++.+++.+..++.+.+||+|||||++|||||+.
T Consensus        83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~  156 (255)
T cd03236          83 LEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR  156 (255)
T ss_pred             hhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence            2   247899999877774 7777766532     122345678899999999988899999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++++|||||++||+.++
T Consensus       157 ~p~illlDEPts~LD~~~~  175 (255)
T cd03236         157 DADFYFFDEPSSYLDIKQR  175 (255)
T ss_pred             CCCEEEEECCCCCCCHHHH
Confidence            9999999999999999753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.97  E-value=9.2e-32  Score=209.21  Aligned_cols=123  Identities=19%  Similarity=0.175  Sum_probs=106.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCcccccccccccccccHH--h-hccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNIMHLF--Q-YLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~~~~~--~-~~~~ig~   87 (178)
                      .++++++||++.+||    +.+|+|+||+|||       ||++.+.|+  .+|++|++.++|.++....  . .+.+++|
T Consensus        13 ~~~l~~is~~i~~Ge----~~~i~G~nGsGKS-------tLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (200)
T cd03217          13 KEILKGVNLTIKKGE----VHALMGPNGSGKS-------TLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL   81 (200)
T ss_pred             EEeeeccceEECCCc----EEEEECCCCCCHH-------HHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE
Confidence            469999999999999    8889999999999       999999999  4799999999999876532  2 2456999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +||++.+++..++.+++                               ++...+|||||||||+|||||+.+|++++|||
T Consensus        82 v~q~~~~~~~~~~~~~l-------------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDE  130 (200)
T cd03217          82 AFQYPPEIPGVKNADFL-------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDE  130 (200)
T ss_pred             eecChhhccCccHHHHH-------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99999888888887765                               12236899999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       131 Pt~~LD~~~~  140 (200)
T cd03217         131 PDSGLDIDAL  140 (200)
T ss_pred             CCccCCHHHH
Confidence            9999998754

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.97  E-value=9.7e-32  Score=257.01  Aligned_cols=161  Identities=16%  Similarity=0.088  Sum_probs=128.2

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccc-cccccc--HHh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLL-MTNIMH--LFQ   80 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~-g~~~~~--~~~   80 (178)
                      |.|+.+. ..++|+||||+|++||    ..+|+|+||||||       ||++.+.|+.+|++|+|.++ |.++.+  ...
T Consensus       390 f~Y~~~~-~~~vL~~isl~i~~Ge----~vaIvG~SGsGKS-------TLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~  457 (1466)
T PTZ00265        390 FHYDTRK-DVEIYKDLNFTLTEGK----TYAFVGESGCGKS-------TILKLIERLYDPTEGDIIINDSHNLKDINLKW  457 (1466)
T ss_pred             EEcCCCC-CCceeccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHHHhccCCCCeEEEeCCcchhhCCHHH
Confidence            5675321 2469999999999999    8889999999999       99999999999999999994 577654  456


Q ss_pred             hccceEEecCCCCCCCCCCHHHHHHHHHHh-cC---------C-------------------------------------
Q psy860           81 YLSGIGYCPQFNGINEHLTAQEMLECFSAL-RG---------I-------------------------------------  113 (178)
Q Consensus        81 ~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~---------~-------------------------------------  113 (178)
                      +|+.||||+|++.+|+ .|++||+.+.... ..         .                                     
T Consensus       458 lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  536 (1466)
T PTZ00265        458 WRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIE  536 (1466)
T ss_pred             HHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhh
Confidence            7889999999999886 5999999874210 00         0                                     


Q ss_pred             ----CCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          114 ----PGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       114 ----~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                          ......+.+.++++.+++.+.           ..+...+||||||||++|||||+.+|++||||||||+||+.++
T Consensus       537 ~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se  615 (1466)
T PTZ00265        537 MRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE  615 (1466)
T ss_pred             cccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence                001123467777788877543           2456788999999999999999999999999999999998753

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=5.1e-32  Score=216.18  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=107.3

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      +..|++||||+|.+||    ..+|+|.||||||       |+-+.++|+.+|++|+|+++|+++..+.            
T Consensus        25 ~v~avd~Vsf~i~~ge----~~glVGESG~GKS-------Tlgr~i~~L~~pt~G~i~f~g~~i~~~~------------   81 (268)
T COG4608          25 YVKAVDGVSFSIKEGE----TLGLVGESGCGKS-------TLGRLILGLEEPTSGEILFEGKDITKLS------------   81 (268)
T ss_pred             ceEEecceeEEEcCCC----EEEEEecCCCCHH-------HHHHHHHcCcCCCCceEEEcCcchhhcc------------
Confidence            4689999999999999    5559999999999       9999999999999999999998754432            


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                                             ..+..+++.++|+.+|+. +..++++++|||||+||+.|||||+.+|+++++|||||
T Consensus        82 -----------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvS  138 (268)
T COG4608          82 -----------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS  138 (268)
T ss_pred             -----------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchh
Confidence                                   234456799999999997 68899999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      +||...+
T Consensus       139 aLDvSiq  145 (268)
T COG4608         139 ALDVSVQ  145 (268)
T ss_pred             hcchhHH
Confidence            9998654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.97  E-value=1.6e-31  Score=256.56  Aligned_cols=152  Identities=15%  Similarity=0.160  Sum_probs=127.3

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|.++  ..++|+||||+|++||    ..+|+|++|+|||       ||++.+.|+.+|++|+|.+||.++.+  ..++
T Consensus      1242 f~Y~~~--~~~vL~~isl~I~~Ge----kvaIVG~SGSGKS-------TL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232       1242 LRYRPG--LPPVLHGLSFFVSPSE----KVGVVGRTGAGKS-------SMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred             EEECCC--CCcccccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCcCCCceEEECCEEhhhCCHHHH
Confidence            566433  2369999999999999    8889999999999       99999999999999999999999876  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-----------CcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-----------RVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv  150 (178)
                      |++|+||||++.+|.. |++||+..+.       ....+++.++++..++.+..+           ..-.+||||||||+
T Consensus      1309 R~~i~iVpQdp~LF~g-TIr~NL~~~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1380 (1495)
T PLN03232       1309 RRVLSIIPQSPVLFSG-TVRFNIDPFS-------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL 1380 (1495)
T ss_pred             HhhcEEECCCCeeeCc-cHHHHcCCCC-------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH
Confidence            9999999999998875 9999997531       123456777777777654322           22357999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++|+||||||+||+.+
T Consensus      1381 aLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232       1381 SLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred             HHHHHHHhCCCEEEEECCcccCCHHH
Confidence            99999999999999999999999865

>PLN03130 ABC transporter C family member; Provisional

Probab=99.97  E-value=1.3e-31  Score=258.14  Aligned_cols=152  Identities=16%  Similarity=0.182  Sum_probs=127.6

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|.++.  .++|+||||+|++||    ..+|+|++|+|||       ||++.+.|+.+|++|+|.+||.++.+  ..++
T Consensus      1245 f~Y~~~~--~~VL~~is~~I~~Ge----kVaIVGrSGSGKS-------TLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130       1245 LRYRPEL--PPVLHGLSFEISPSE----KVGIVGRTGAGKS-------SMLNALFRIVELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred             EEeCCCC--CceecceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCcCCCCCceEEECCEecccCCHHHH
Confidence            5674432  369999999999999    8889999999999       99999999999999999999999976  5688


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cC----cCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HR----VSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~----~~~~LSgGqkQRv  150 (178)
                      |++|++|||++.+|.. |+++|+..+.       ....+.+.++++..++.+..       |.    .-.+||||||||+
T Consensus      1312 R~~IsiVpQdp~LF~G-TIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130       1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred             HhccEEECCCCccccc-cHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence            9999999999998875 9999997531       12345677777777664332       22    2347999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++||||||||+||+.+
T Consensus      1384 aLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130       1384 SLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCCHHH
Confidence            99999999999999999999999865

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.97  E-value=1.1e-31  Score=237.00  Aligned_cols=153  Identities=11%  Similarity=-0.051  Sum_probs=125.4

Q ss_pred             hhhhhccC-ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHh
Q psy860            4 FQYLSGIG-YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQ   80 (178)
Q Consensus         4 ~~~~~~~~-~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~   80 (178)
                      |.|+...+ ..++|+|+||++++||    ..+|+|+||+|||       |+++.+.|+.+|++|+|.++|.++.+  ..+
T Consensus       345 f~y~~~~~~~~~~l~~vs~~i~~G~----~~aivG~sGsGKS-------Tl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~  413 (555)
T TIGR01194       345 MNPKAPEGSEGFALGPIDLRIAQGD----IVFIVGENGCGKS-------TLAKLFCGLYIPQEGEILLDGAAVSADSRDD  413 (555)
T ss_pred             EEeCCCCCCcCceeccceEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCCCCHHH
Confidence            55643222 1359999999999999    8889999999999       99999999999999999999999875  356


Q ss_pred             hccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCc------CCCCChHHHHHHHHHH
Q psy860           81 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRV------SGRYSGGNKRKLSTAM  154 (178)
Q Consensus        81 ~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~LSgGqkQRv~IAr  154 (178)
                      +++.++||+|++.+|.. |+++|.         ......+++.++++.+++.+..++.      ...||||||||++|||
T Consensus       414 ~~~~i~~v~q~~~lf~~-ti~~n~---------~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaR  483 (555)
T TIGR01194       414 YRDLFSAIFADFHLFDD-LIGPDE---------GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALIC  483 (555)
T ss_pred             HHhhCcEEccChhhhhh-hhhccc---------ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHH
Confidence            78899999999887654 666663         1123355678889999987654432      3579999999999999


Q ss_pred             HHhCCCCeEEeeCCCCCCCCCCC
Q psy860          155 ALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       155 aL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |++.+|+++|||||||+||+.++
T Consensus       484 all~~~~ililDE~ts~LD~~~~  506 (555)
T TIGR01194       484 AWLEDRPILLFDEWAADQDPAFK  506 (555)
T ss_pred             HHHcCCCEEEEeCCccCCCHHHH
Confidence            99999999999999999999764

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.97  E-value=3e-31  Score=253.18  Aligned_cols=153  Identities=16%  Similarity=0.189  Sum_probs=129.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--cccccccccccccccHHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--FQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      ..+|+|||+++++||    +.+|+|+||+|||       ||++.+.|..+  +.+|++.++|.+... ...++.+|||+|
T Consensus       893 ~~iL~~vs~~i~~Ge----l~aL~G~sGaGKT-------TLL~~LaG~~~~g~~~G~I~inG~~~~~-~~~~~~igyv~Q  960 (1470)
T PLN03140        893 LQLLREVTGAFRPGV----LTALMGVSGAGKT-------TLMDVLAGRKTGGYIEGDIRISGFPKKQ-ETFARISGYCEQ  960 (1470)
T ss_pred             ceEeeCcEEEEECCe----EEEEECCCCCCHH-------HHHHHHcCCCCCCcccceEEECCccCCh-HHhhhheEEEcc
Confidence            469999999999999    8889999999999       99999999865  368999999987643 234567999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcC---CCCCChhHHHHHHHHHcCCCccccCcC-----CCCChHHHHHHHHHHHHhCCCCe
Q psy860           91 FNGINEHLTAQEMLECFSALRG---IPGVKSGPIIDYWIDLLGLTEYRHRVS-----GRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      ++.+++.+||+|++.+....+.   .+..+..+.++++++.++|.+.+++.+     ..|||||||||+||++|+.+|++
T Consensus       961 ~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~l 1040 (1470)
T PLN03140        961 NDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI 1040 (1470)
T ss_pred             ccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCE
Confidence            9999999999999998765432   111223356889999999998888886     58999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      |||||||+|||+.++
T Consensus      1041 L~LDEPTsgLD~~~a 1055 (1470)
T PLN03140       1041 IFMDEPTSGLDARAA 1055 (1470)
T ss_pred             EEEeCCCCCCCHHHH
Confidence            999999999998653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.97  E-value=4e-31  Score=236.51  Aligned_cols=143  Identities=12%  Similarity=0.050  Sum_probs=121.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|+.|+    ..+|+|+||+|||       ||++++.|+.+|++|.|.+ |.++        .|||++|++
T Consensus       332 ~~il~~vsl~i~~Ge----~~~l~G~NGsGKS-------TLlk~l~G~~~p~~G~i~~-~~~~--------~i~y~~q~~  391 (635)
T PRK11147        332 KQLVKDFSAQVQRGD----KIALIGPNGCGKT-------TLLKLMLGQLQADSGRIHC-GTKL--------EVAYFDQHR  391 (635)
T ss_pred             eEEEcCcEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCcEEEE-CCCc--------EEEEEeCcc
Confidence            469999999999999    7889999999999       9999999999999999977 4332        599999985


Q ss_pred             -CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           93 -GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        93 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                       .+++.+||.+++.+.......  ......+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus       392 ~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~  469 (635)
T PRK11147        392 AELDPEKTVMDNLAEGKQEVMV--NGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN  469 (635)
T ss_pred             cccCCCCCHHHHHHhhcccccc--cchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence             588899999999764221111  12234678889999996 56899999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       470 ~LD~~~~  476 (635)
T PRK11147        470 DLDVETL  476 (635)
T ss_pred             CCCHHHH
Confidence            9998753

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.97  E-value=3.5e-31  Score=252.56  Aligned_cols=154  Identities=16%  Similarity=0.154  Sum_probs=128.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC----CcccccccccccccccHH-hhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS----PFQAAQNSLLMTNIMHLF-QYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~----~~~~g~i~~~g~~~~~~~-~~~~~ig~   87 (178)
                      .++|+|||+++++||    +.+|+|+||+|||       ||++.+.|..    +|++|+|.++|.++.+.. +.++.++|
T Consensus        74 ~~iL~~vs~~i~~Ge----~~aIlG~nGsGKS-------TLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~y  142 (1394)
T TIGR00956        74 FDILKPMDGLIKPGE----LTVVLGRPGSGCS-------TLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVY  142 (1394)
T ss_pred             ceeeeCCEEEEECCE----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEE
Confidence            569999999999999    7889999999999       9999999985    578999999998875543 35667999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcC-------CCCCChhHH-HHHHHHHcCCCccccCcC-----CCCChHHHHHHHHHH
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRG-------IPGVKSGPI-IDYWIDLLGLTEYRHRVS-----GRYSGGNKRKLSTAM  154 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~-------~~~~~~~~~-~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~IAr  154 (178)
                      ++|++.+++.+||+|++.+....+.       ....+..++ ++++++.+||.+.+++++     ..|||||||||+||+
T Consensus       143 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~  222 (1394)
T TIGR00956       143 NAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAE  222 (1394)
T ss_pred             eccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHH
Confidence            9999999999999999998765432       111111122 456899999998877654     579999999999999


Q ss_pred             HHhCCCCeEEeeCCCCCCCCCCC
Q psy860          155 ALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       155 aL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|+.+|++++|||||+|||+.++
T Consensus       223 aL~~~p~vlllDEPTsgLD~~~~  245 (1394)
T TIGR00956       223 ASLGGAKIQCWDNATRGLDSATA  245 (1394)
T ss_pred             HHHhCCCEEEEeCCCCCcCHHHH
Confidence            99999999999999999998753

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=9.8e-32  Score=201.52  Aligned_cols=155  Identities=19%  Similarity=0.217  Sum_probs=137.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc-c--------cHHhhc-
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI-M--------HLFQYL-   82 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~-~--------~~~~~~-   82 (178)
                      .+++++|||++..||    +..+-|++|+|||       |+++++.+-..|++|+|++....- -        ..-++| 
T Consensus        24 LpV~~~vslsV~aGE----CvvL~G~SG~GKS-------tllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr   92 (235)
T COG4778          24 LPVLRNVSLSVNAGE----CVVLHGPSGSGKS-------TLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRR   92 (235)
T ss_pred             eeeeeceeEEecCcc----EEEeeCCCCCcHH-------HHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHH
Confidence            689999999999999    8889999999999       999999999999999997765431 1        122344 


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +.||||.|.-...|..+..|.+.-+....+.+.+..+.++.+++.++++. ..++-.|.++|||+||||.|||.++.+-.
T Consensus        93 ~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~p  172 (235)
T COG4778          93 TTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYP  172 (235)
T ss_pred             hhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCc
Confidence            56999999988889999999888887778888888888999999999997 67788999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNTT  178 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~~  178 (178)
                      +|+|||||++||..+++
T Consensus       173 ILLLDEPTasLDa~Nr~  189 (235)
T COG4778         173 ILLLDEPTASLDATNRA  189 (235)
T ss_pred             eEEecCCcccccccchH
Confidence            99999999999998863

>KOG0061|consensus

Probab=99.97  E-value=8.7e-31  Score=232.99  Aligned_cols=153  Identities=21%  Similarity=0.203  Sum_probs=135.9

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC---cccccccccccccccHHhhccceEEe
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP---FQAAQNSLLMTNIMHLFQYLSGIGYC   88 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~---~~~g~i~~~g~~~~~~~~~~~~ig~v   88 (178)
                      ..++|++||..++.||    +.||.|++|+|||       ||+..+.|...   ..+|+|.+||+. ......++..|||
T Consensus        42 ~k~iL~~vsg~~~~Ge----l~AimG~SGsGKt-------TLL~~Lagr~~~~~~~~G~ilvNG~~-~~~~~~~~~s~yV  109 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGE----LLAIMGPSGSGKT-------TLLNALAGRLNGGLKLSGEILLNGRP-RDSRSFRKISGYV  109 (613)
T ss_pred             cceeeeCcEEEEecCe----EEEEECCCCCCHH-------HHHHHHhccccCCCcceEEEEECCcc-CchhhhhheeEEE
Confidence            5789999999999999    7789999999999       99999998865   489999999943 3455677789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcCC---CCCChhHHHHHHHHHcCCCccccCcCCC-----CChHHHHHHHHHHHHhCCC
Q psy860           89 PQFNGINEHLTAQEMLECFSALRGI---PGVKSGPIIDYWIDLLGLTEYRHRVSGR-----YSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~IAraL~~~P  160 (178)
                      .|++.+++.+||+|++.+.+..+-.   +.++.+++++++++.+|+.+.+|..++.     +|||||+||+||.-|+++|
T Consensus       110 ~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P  189 (613)
T KOG0061|consen  110 QQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDP  189 (613)
T ss_pred             cccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCC
Confidence            9999999999999999998877532   3456677899999999999999999974     9999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~  176 (178)
                      .+|+|||||||||..+
T Consensus       190 ~iLflDEPTSGLDS~s  205 (613)
T KOG0061|consen  190 SILFLDEPTSGLDSFS  205 (613)
T ss_pred             CEEEecCCCCCcchhh
Confidence            9999999999999865

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.97  E-value=4.8e-31  Score=215.30  Aligned_cols=135  Identities=20%  Similarity=0.158  Sum_probs=109.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|           .++|++|++
T Consensus        50 ~~vL~~vs~~i~~Ge----~~~liG~NGsGKS-------TLl~~I~Gl~~p~~G~I~i~g-----------~i~yv~q~~  107 (282)
T cd03291          50 APVLKNINLKIEKGE----MLAITGSTGSGKT-------SLLMLILGELEPSEGKIKHSG-----------RISFSSQFS  107 (282)
T ss_pred             ccceeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECC-----------EEEEEeCcc
Confidence            469999999999999    7889999999999       999999999999999998876           399999998


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-----------cccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-----------YRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      .+++. |++||+.+....     .  ...+.+.++.+++.+           ..++.+.+||+||||||+|||||+.+|+
T Consensus       108 ~l~~~-tv~enl~~~~~~-----~--~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~  179 (282)
T cd03291         108 WIMPG-TIKENIIFGVSY-----D--EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD  179 (282)
T ss_pred             ccccc-CHHHHhhccccc-----C--HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            87764 999998753211     0  112233344444432           2234567999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      ++||||||+|||+.++
T Consensus       180 iLiLDEPt~gLD~~~~  195 (282)
T cd03291         180 LYLLDSPFGYLDVFTE  195 (282)
T ss_pred             EEEEECCCccCCHHHH
Confidence            9999999999999754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.96  E-value=4.9e-31  Score=253.49  Aligned_cols=152  Identities=17%  Similarity=0.117  Sum_probs=127.8

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+++.  .++|+||||+|++||    ..+|+|++|+|||       ||++.+.|+.+|++|+|.+||.++.+  ...+
T Consensus      1292 f~Y~~~~--~~vL~~is~~I~~Ge----kiaIVGrTGsGKS-------TL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957      1292 LRYREDL--DLVLRHINVTIHGGE----KVGIVGRTGAGKS-------SLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred             EEeCCCC--cccccceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence            5675443  269999999999999    7889999999999       99999999999999999999999986  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccCcC----CCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHRVS----GRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~~----~~LSgGqkQRv  150 (178)
                      |++|++|||+|.+|.. |+++|+..+.       ....+.+.++++..++.+.       .|..+    ..||||||||+
T Consensus      1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957      1359 RFKITIIPQDPVLFSG-SLRMNLDPFS-------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred             HhcCeEECCCCcccCc-cHHHHcCccc-------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence            9999999999999876 9999996421       1224557777887776432       23333    46999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++|+||||||+||+.+
T Consensus      1431 ~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957      1431 CLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHH
Confidence            99999999999999999999999865

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.96  E-value=9.9e-31  Score=251.47  Aligned_cols=152  Identities=17%  Similarity=0.157  Sum_probs=128.1

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |+|.++.  .++|+||||+|++||    ..+|+|++|+|||       ||++.+.|+.+|++|+|.+||.++.+  ..++
T Consensus      1316 f~Y~~~~--~~vL~~vsf~I~~Ge----kVaIVGrTGSGKS-------TLl~lLlrl~~p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243       1316 MRYREGL--PLVLRGVSFRIAPRE----KVGIVGRTGSGKS-------TLLLTFMRMVEVCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred             EEeCCCC--CceeecceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEEcccCCHHHH
Confidence            5675432  359999999999999    7889999999999       99999999999999999999999976  5688


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cCcC----CCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HRVS----GRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~LSgGqkQRv  150 (178)
                      |+.|+||||++.+|.. |+++|+..+.       ....+.+.++++.+++.+..       |..+    .+||||||||+
T Consensus      1383 R~~I~iVpQdp~LF~g-TIreNIdp~~-------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL 1454 (1560)
T PTZ00243       1383 RRQFSMIPQDPVLFDG-TVRQNVDPFL-------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLM 1454 (1560)
T ss_pred             HhcceEECCCCccccc-cHHHHhCccc-------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHH
Confidence            9999999999998865 9999996421       12345688888888875432       3333    46999999999


Q ss_pred             HHHHHHhCC-CCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGD-RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~-P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+ |++||||||||+||+.+
T Consensus      1455 aLARALL~~~~~ILlLDEATSaLD~~t 1481 (1560)
T PTZ00243       1455 CMARALLKKGSGFILMDEATANIDPAL 1481 (1560)
T ss_pred             HHHHHHhcCCCCEEEEeCCCccCCHHH
Confidence            999999996 89999999999999865

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.5e-30  Score=197.32  Aligned_cols=150  Identities=20%  Similarity=0.202  Sum_probs=135.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHh-hccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQ-YLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~-~~~~ig~v~Q~   91 (178)
                      .+.|.++||++.+||    +..|.|+||+|||       ||++.+.|+..|++|+|.+.+.++....+ +++.+-|+--.
T Consensus        15 ~~lf~~L~f~l~~Ge----~~~i~G~NG~GKT-------tLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~   83 (209)
T COG4133          15 RTLFSDLSFTLNAGE----ALQITGPNGAGKT-------TLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQ   83 (209)
T ss_pred             ceeecceeEEEcCCC----EEEEECCCCCcHH-------HHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhcc
Confidence            578999999999999    7779999999999       99999999999999999999999876544 66677788788


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      +.+-+.+|++||+.|+..+.+-   .....+.++++.|||....|.++.+||-|||+||+|||-.+..+++=||||||++
T Consensus        84 ~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta  160 (209)
T COG4133          84 PGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA  160 (209)
T ss_pred             ccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence            8999999999999999887653   2245688899999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          172 QNLYN  176 (178)
Q Consensus       172 LD~~~  176 (178)
                      ||..+
T Consensus       161 LDk~g  165 (209)
T COG4133         161 LDKEG  165 (209)
T ss_pred             cCHHH
Confidence            99865

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.96  E-value=2.1e-30  Score=215.74  Aligned_cols=160  Identities=20%  Similarity=0.184  Sum_probs=129.1

Q ss_pred             hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----cccccccccccccccH--
Q psy860            6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMHL--   78 (178)
Q Consensus         6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~~--   78 (178)
                      |..+-|.+.++++|||+|.+||    -.|++|.+|||||       -....++++++     --+|.|.++|+++-..  
T Consensus        16 f~~~~~~~~aVk~isf~i~~GE----tlAlVGESGSGKS-------vTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se   84 (534)
T COG4172          16 FHQEGGTVEAVKGISFDIEAGE----TLALVGESGSGKS-------VTALSILGLLPSPAAAHPSGSILFDGEDLLAASE   84 (534)
T ss_pred             EecCCcceEeeccceeeecCCC----EEEEEecCCCCcc-------HHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence            3344467899999999999999    7779999999999       33334444432     2467899999987432  


Q ss_pred             ---Hhhc-cceEEecCCC--CCCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHHH
Q psy860           79 ---FQYL-SGIGYCPQFN--GINEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNKR  148 (178)
Q Consensus        79 ---~~~~-~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqkQ  148 (178)
                         ..+| .+|+++||+|  .+.|-.|+...+....++ +++.+.++++++.++|+.+|+.+   ..+.+|++|||||||
T Consensus        85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQ  164 (534)
T COG4172          85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQ  164 (534)
T ss_pred             HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhh
Confidence               3344 4699999998  588888887777665443 57777888999999999999963   558899999999999


Q ss_pred             HHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          149 KLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       149 Rv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      ||+||+||+.+|++||.||||++||+.-
T Consensus       165 RVMIAMALan~P~lLIADEPTTALDVtv  192 (534)
T COG4172         165 RVMIAMALANEPDLLIADEPTTALDVTV  192 (534)
T ss_pred             HHHHHHHHcCCCCeEeecCCcchhhhhh
Confidence            9999999999999999999999999864

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.6e-30  Score=230.45  Aligned_cols=148  Identities=18%  Similarity=0.117  Sum_probs=116.0

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEe
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC   88 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v   88 (178)
                      .+|..++|+||||+|..|+    ..+|+|+||||||       ||++++.|..+|++|.|.+++..         .++|+
T Consensus        10 ~~g~~~~l~~vs~~i~~Ge----~v~LvG~NGsGKS-------TLLkiL~G~~~pd~G~I~~~~~~---------~i~~~   69 (638)
T PRK10636         10 RRGVRVLLDNATATINPGQ----KVGLVGKNGCGKS-------TLLALLKNEISADGGSYTFPGNW---------QLAWV   69 (638)
T ss_pred             EeCCceeecCcEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEecCCC---------EEEEE
Confidence            3455679999999999999    7889999999999       99999999999999999887642         37888


Q ss_pred             cCCCCCCCCCCHHHHHHH-----------------------HHH----hcCCCCCChhHHHHHHHHHcCCC-ccccCcCC
Q psy860           89 PQFNGINEHLTAQEMLEC-----------------------FSA----LRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSG  140 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~-----------------------~~~----~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~  140 (178)
                      +|++..+ ..++.+.+.-                       +..    .......+..+++.++++.+|+. +..++++.
T Consensus        70 ~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~  148 (638)
T PRK10636         70 NQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS  148 (638)
T ss_pred             ecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence            8754322 2344332210                       000    00111223456788999999997 57899999


Q ss_pred             CCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          141 RYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       141 ~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||||||||+||+||+.+|++|||||||++||+.++
T Consensus       149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~  185 (638)
T PRK10636        149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAV  185 (638)
T ss_pred             hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHH
Confidence            9999999999999999999999999999999998753

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=3.7e-31  Score=194.95  Aligned_cols=153  Identities=18%  Similarity=0.110  Sum_probs=131.6

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc---ccccccccccccccHHhhccceEE
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF---QAAQNSLLMTNIMHLFQYLSGIGY   87 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~---~~g~i~~~g~~~~~~~~~~~~ig~   87 (178)
                      +..--|.+|||+|.+||    +..+.||+|||||       ||+.-+.|.+.+   -.|+++++++.+..+...++.+|+
T Consensus        13 ~g~cLLa~~n~Tia~Ge----ivtlMGPSGcGKS-------TLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi   81 (213)
T COG4136          13 PGSCLLANVNFTIAKGE----IVTLMGPSGCGKS-------TLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI   81 (213)
T ss_pred             CCceEEEeeeEEecCCc----EEEEECCCCccHH-------HHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence            33456889999999999    6669999999999       888878777665   468999999988877777889999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +||++-+||+++|.+|+.|.... .+.....+..++.+|++.++....++.|.+||||||-||++-|+|+.+|+.++|||
T Consensus        82 LFQD~lLFphlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE  160 (213)
T COG4136          82 LFQDALLFPHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE  160 (213)
T ss_pred             eecccccccccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence            99999999999999999874321 12223445678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          168 PFSSQNLY  175 (178)
Q Consensus       168 Pt~gLD~~  175 (178)
                      |+|-||..
T Consensus       161 PFS~LD~A  168 (213)
T COG4136         161 PFSRLDVA  168 (213)
T ss_pred             chhHHHHH
Confidence            99999964

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.8e-30  Score=230.30  Aligned_cols=141  Identities=16%  Similarity=0.146  Sum_probs=118.2

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |..++|+||||+|..||    +.+|+|+||+|||       ||++.+.|..+|++|.|.+++.         ..+||++|
T Consensus       323 ~~~~il~~isl~i~~Ge----~~~l~G~NGsGKS-------TLlk~l~G~~~p~~G~i~~~~~---------~~igy~~Q  382 (638)
T PRK10636        323 GDRIILDSIKLNLVPGS----RIGLLGRNGAGKS-------TLIKLLAGELAPVSGEIGLAKG---------IKLGYFAQ  382 (638)
T ss_pred             CCeeeeccceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCeEEECCC---------EEEEEecC
Confidence            33569999999999999    8889999999999       9999999999999999987532         25999999


Q ss_pred             CC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           91 FN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        91 ~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +.  .+.+..|+.+++..   .   ......+.+.++++.+++. +..++++.+|||||||||+||++|+.+|++|||||
T Consensus       383 ~~~~~l~~~~~~~~~~~~---~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE  456 (638)
T PRK10636        383 HQLEFLRADESPLQHLAR---L---APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE  456 (638)
T ss_pred             cchhhCCccchHHHHHHH---h---CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            74  35566677776532   1   1122345788999999996 47899999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       457 Pt~~LD~~~~  466 (638)
T PRK10636        457 PTNHLDLDMR  466 (638)
T ss_pred             CCCCCCHHHH
Confidence            9999999754

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.4e-30  Score=222.72  Aligned_cols=154  Identities=21%  Similarity=0.133  Sum_probs=130.0

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHh--h
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQ--Y   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~--~   81 (178)
                      |.|+..-  .++|+|+||++..||    -.||+|++|||||       |+++.+.|...|++|++.++|.++....+  +
T Consensus       344 F~y~~~~--~~~L~~~~l~l~~GE----kvAIlG~SGsGKS-------TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~  410 (573)
T COG4987         344 FTYPGQQ--TKALKNFNLTLAQGE----KVAILGRSGSGKS-------TLLQLLAGAWDPQQGSITLNGVEIASLDEQAL  410 (573)
T ss_pred             eecCCCc--cchhhccceeecCCC----eEEEECCCCCCHH-------HHHHHHHhccCCCCCeeeECCcChhhCChhhH
Confidence            5563332  479999999999999    7889999999999       99999999999999999999999987654  7


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCc-----------CCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRV-----------SGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGqkQRv  150 (178)
                      |+.+++++|.+++|. -|+++|+....      .....+...++++.+||.+.....           -..||||||||+
T Consensus       411 ~e~i~vl~Qr~hlF~-~Tlr~NL~lA~------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL  483 (573)
T COG4987         411 RETISVLTQRVHLFS-GTLRDNLRLAN------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL  483 (573)
T ss_pred             HHHHhhhccchHHHH-HHHHHHHhhcC------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence            889999999999865 59999997642      123356678888999887544333           357999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +|||+|.++..+++|||||.|||+.+.
T Consensus       484 AlAR~LL~dapl~lLDEPTegLD~~TE  510 (573)
T COG4987         484 ALARALLHDAPLWLLDEPTEGLDPITE  510 (573)
T ss_pred             HHHHHHHcCCCeEEecCCcccCChhhH
Confidence            999999999999999999999999864

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=2.2e-30  Score=195.66  Aligned_cols=103  Identities=16%  Similarity=0.100  Sum_probs=94.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~   89 (178)
                      .++++++||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|.++...   ...++.++|+|
T Consensus        13 ~~vl~~i~~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~   81 (163)
T cd03216          13 VKALDGVSLSVRRGE----VHALLGENGAGKS-------TLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY   81 (163)
T ss_pred             eEEEeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE
Confidence            479999999999999    8889999999999       999999999999999999999887542   23456799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |                                                   ||+|||||++|||||+.+|++++|||||
T Consensus        82 q---------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~  110 (163)
T cd03216          82 Q---------------------------------------------------LSVGERQMVEIARALARNARLLILDEPT  110 (163)
T ss_pred             e---------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            8                                                   9999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       111 ~~LD~~~~  118 (163)
T cd03216         111 AALTPAEV  118 (163)
T ss_pred             cCCCHHHH
Confidence            99998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.96  E-value=5.2e-30  Score=227.35  Aligned_cols=143  Identities=17%  Similarity=0.163  Sum_probs=120.3

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccc-----------ccccccccHH-h-
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNS-----------LLMTNIMHLF-Q-   80 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~-----------~~g~~~~~~~-~-   80 (178)
                      .+|++|+ .+++||    +.+|+|+||+|||       |+++.+.|+.+|+.|++.           ++|.++.+.. + 
T Consensus        88 ~~L~~l~-~i~~Ge----v~gLvG~NGaGKS-------TLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~  155 (590)
T PRK13409         88 FKLYGLP-IPKEGK----VTGILGPNGIGKT-------TAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL  155 (590)
T ss_pred             eeEecCC-cCCCCC----EEEEECCCCCCHH-------HHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence            4899999 999999    7779999999999       999999999999999997           8888776542 1 


Q ss_pred             --hccceEEecCCCCCCCC---CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHH
Q psy860           81 --YLSGIGYCPQFNGINEH---LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMA  155 (178)
Q Consensus        81 --~~~~ig~v~Q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAra  155 (178)
                        .+.++++.+|....++.   .||.|++...         +.+++++++++.+++.+..++.+.+|||||||||+||+|
T Consensus       156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~a  226 (590)
T PRK13409        156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAA  226 (590)
T ss_pred             hccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence              12346777776544443   3898887531         234578899999999988999999999999999999999


Q ss_pred             HhCCCCeEEeeCCCCCCCCCCC
Q psy860          156 LIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       156 L~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |+.+|++++|||||++||+.++
T Consensus       227 l~~~p~lllLDEPts~LD~~~~  248 (590)
T PRK13409        227 LLRDADFYFFDEPTSYLDIRQR  248 (590)
T ss_pred             HhcCCCEEEEECCCCCCCHHHH
Confidence            9999999999999999999754

>PLN03140 ABC transporter G family member; Provisional

Probab=99.96  E-value=4.7e-30  Score=245.05  Aligned_cols=153  Identities=17%  Similarity=0.175  Sum_probs=128.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---cccccccccccccHHhhccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMHLFQYLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~~~~~~~~ig~v~   89 (178)
                      .++|+|||+.|++||    +.+|+|+||+|||       ||++.+.|..+|+   +|+|.++|.++.+.. .++.++||+
T Consensus       178 ~~IL~~vs~~i~~Ge----~~~llGpnGSGKS-------TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~-~~~~i~yv~  245 (1470)
T PLN03140        178 LTILKDASGIIKPSR----MTLLLGPPSSGKT-------TLLLALAGKLDPSLKVSGEITYNGYRLNEFV-PRKTSAYIS  245 (1470)
T ss_pred             ceeccCCeEEEeCCe----EEEEEcCCCCCHH-------HHHHHHhCCCCCCCcceeEEEECCEechhhc-ccceeEEec
Confidence            569999999999999    7779999999999       9999999999888   999999998875442 256799999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCC----------CCC------------------------hhHHHHHHHHHcCCCccc
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIP----------GVK------------------------SGPIIDYWIDLLGLTEYR  135 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~  135 (178)
                      |++.+++.+||+|++.|....++..          ..+                        ....++++++.+||.+.+
T Consensus       246 Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~  325 (1470)
T PLN03140        246 QNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICK  325 (1470)
T ss_pred             ccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcccc
Confidence            9999999999999999976554211          000                        001246789999998765


Q ss_pred             -----cCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          136 -----HRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       136 -----~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                           ++.+..|||||||||.||++|+.+|+++++||||+|||+.++
T Consensus       326 ~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~  372 (1470)
T PLN03140        326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT  372 (1470)
T ss_pred             CceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHH
Confidence                 456789999999999999999999999999999999998753

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=5.1e-30  Score=198.33  Aligned_cols=159  Identities=18%  Similarity=0.135  Sum_probs=131.1

Q ss_pred             hccCc-cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhh--ccc
Q psy860            8 SGIGY-CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQY--LSG   84 (178)
Q Consensus         8 ~~~~~-~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~--~~~   84 (178)
                      +|++. .+||+++|++|.+|+    |+.++|.||+|||       |+++.+.|-.+|++|+|.++|.++......  ...
T Consensus        13 ~g~~~ek~~l~~~sL~I~~g~----FvtViGsNGAGKS-------Tlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~   81 (263)
T COG1101          13 KGTPLEKRALNGLSLEIAEGD----FVTVIGSNGAGKS-------TLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL   81 (263)
T ss_pred             CCChhHHHHHhcCceeecCCc----eEEEEcCCCccHH-------HHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence            34443 679999999999999    9999999999999       999999999999999999999999875433  346


Q ss_pred             eEEecCCC--CCCCCCCHHHHHHHHHHh---cCCCC---CChhHHHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHH
Q psy860           85 IGYCPQFN--GINEHLTAQEMLECFSAL---RGIPG---VKSGPIIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAM  154 (178)
Q Consensus        85 ig~v~Q~~--~l~~~ltv~e~l~~~~~~---~~~~~---~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAr  154 (178)
                      ++-|||+|  ..++.+|++||+..+...   ++...   ...++...+-++.+  |+++..+.+++-|||||||-|++++
T Consensus        82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M  161 (263)
T COG1101          82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM  161 (263)
T ss_pred             HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH
Confidence            88999997  578999999999886543   22222   12222333445555  4568889999999999999999999


Q ss_pred             HHhCCCCeEEeeCCCCCCCCCCC
Q psy860          155 ALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       155 aL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |.++.|++|+|||-|++|||++.
T Consensus       162 Atl~~pkiLLLDEHTAALDPkta  184 (263)
T COG1101         162 ATLHPPKILLLDEHTAALDPKTA  184 (263)
T ss_pred             HhcCCCcEEEecchhhcCCcchH
Confidence            99999999999999999999863

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.96  E-value=9.5e-30  Score=244.20  Aligned_cols=151  Identities=16%  Similarity=0.097  Sum_probs=126.7

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |+|+++  ..++|+||||+|++||    ..+|+|++|+|||       ||++.+.|+.+ ++|.|.+||.++..  ...+
T Consensus      1225 ~~Y~~~--~~~vL~~is~~I~~Ge----kvaIvGrSGsGKS-------TLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271      1225 AKYTEA--GRAVLQDLSFSVEGGQ----RVGLLGRTGSGKS-------TLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred             EEeCCC--CcceeeccEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence            456543  2479999999999999    8889999999999       99999999986 78999999999976  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-------CcC----CCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-------RVS----GRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~~~----~~LSgGqkQRv  150 (178)
                      |++|+||||+|.+|.. |+++|+..+.       ....+.+.++++.+++.+...       ..+    ..||||||||+
T Consensus      1291 R~~is~IpQdp~LF~G-TIR~NLdp~~-------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271      1291 RKAFGVIPQKVFIFSG-TFRKNLDPYE-------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred             HhceEEEeCCCccCcc-CHHHHhCccc-------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence            9999999999999875 9999996421       123556888888888754332       222    36999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++||||||||+||+.+
T Consensus      1363 ~LARALLr~~~ILlLDEaTS~lD~~T 1388 (1490)
T TIGR01271      1363 CLARSILSKAKILLLDEPSAHLDPVT 1388 (1490)
T ss_pred             HHHHHHhCCCCEEEEeCCcccCCHHH
Confidence            99999999999999999999999864

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03073 ABC transporter F family; Provisional

Probab=99.96  E-value=1.2e-29  Score=228.92  Aligned_cols=139  Identities=13%  Similarity=0.044  Sum_probs=114.6

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      ++|++|||+|..||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.+++         +.+|||++|++ 
T Consensus       523 ~il~~vsl~i~~Ge----~i~LvG~NGsGKS-------TLLk~L~Gll~p~~G~I~~~~---------~~~igyv~Q~~-  581 (718)
T PLN03073        523 LLFKNLNFGIDLDS----RIAMVGPNGIGKS-------TILKLISGELQPSSGTVFRSA---------KVRMAVFSQHH-  581 (718)
T ss_pred             eeEeccEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCceEEECC---------ceeEEEEeccc-
Confidence            58999999999999    8889999999999       999999999999999997654         23699999985 


Q ss_pred             CCCCCCHHHHHHHH-HHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           94 INEHLTAQEMLECF-SALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        94 l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                       .+.+++.++.... ....  + ....+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus       582 -~~~l~~~~~~~~~~~~~~--~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~  657 (718)
T PLN03073        582 -VDGLDLSSNPLLYMMRCF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNH  657 (718)
T ss_pred             -cccCCcchhHHHHHHHhc--C-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence             2345555554322 1111  1 12245688999999997 467899999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       658 LD~~s~  663 (718)
T PLN03073        658 LDLDAV  663 (718)
T ss_pred             CCHHHH
Confidence            998753

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=3.8e-30  Score=204.92  Aligned_cols=154  Identities=17%  Similarity=0.160  Sum_probs=135.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec-C
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP-Q   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~-Q   90 (178)
                      .+++.||||+|++|+    ...++|+||+|||       |.+|.+.|++.|++|.+.++|...-. ..++-+.+++|+ |
T Consensus        37 ~~AVqdisf~IP~G~----ivgflGaNGAGKS-------TtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gq  105 (325)
T COG4586          37 IEAVQDISFEIPKGE----IVGFLGANGAGKS-------TTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQ  105 (325)
T ss_pred             hhhhheeeeecCCCc----EEEEEcCCCCcch-------hhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhh
Confidence            479999999999999    5559999999999       99999999999999999999987543 344556788875 5


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ..++..++.+.+.+.....++.++..+-+++.+.+.+.++++...+.+++.||-|||.|+.||.||+++|++|+|||||-
T Consensus       106 k~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv  185 (325)
T COG4586         106 KLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV  185 (325)
T ss_pred             hheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence            66787888888877776667777777788889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       186 gLDV~aq  192 (325)
T COG4586         186 GLDVNAQ  192 (325)
T ss_pred             CcchhHH
Confidence            9998764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.96  E-value=2.6e-29  Score=224.88  Aligned_cols=145  Identities=17%  Similarity=0.083  Sum_probs=111.8

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |..++|+||||+|+.|+    ..+|+|+||||||       ||++++.|+.+|++|+|.+++..         .+++++|
T Consensus        14 ~~~~il~~is~~i~~Ge----~v~LvG~NGsGKS-------TLLriiaG~~~p~~G~I~~~~~~---------~~~~l~q   73 (635)
T PRK11147         14 SDAPLLDNAELHIEDNE----RVCLVGRNGAGKS-------TLMKILNGEVLLDDGRIIYEQDL---------IVARLQQ   73 (635)
T ss_pred             CCceeEeCcEEEECCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCeEEEeCCCC---------EEEEecc
Confidence            44579999999999999    8889999999999       99999999999999999887632         2566666


Q ss_pred             CCCCCCCCCHHHHH------------------------------HHHHHh----cCCCCCChhHHHHHHHHHcCCCcccc
Q psy860           91 FNGINEHLTAQEML------------------------------ECFSAL----RGIPGVKSGPIIDYWIDLLGLTEYRH  136 (178)
Q Consensus        91 ~~~l~~~ltv~e~l------------------------------~~~~~~----~~~~~~~~~~~~~~~l~~~~L~~~~~  136 (178)
                      .+......++.+++                              ..+...    ......+..+++.++++.+|+.  .+
T Consensus        74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~  151 (635)
T PRK11147         74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PD  151 (635)
T ss_pred             CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CC
Confidence            54322223444332                              111110    0111223456788999999996  38


Q ss_pred             CcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          137 RVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       137 ~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus       152 ~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~  192 (635)
T PRK11147        152 AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETI  192 (635)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHH
Confidence            89999999999999999999999999999999999999764

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1e-28  Score=192.55  Aligned_cols=153  Identities=19%  Similarity=0.172  Sum_probs=133.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCcccccccccccccccH---HhhccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNIMHL---FQYLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~~~~---~~~~~~ig~   87 (178)
                      +++|++||++|..||    +-+|.||||+|||       ||...++|.  ..+++|+|.++|+++.++   .+.|.+|..
T Consensus        17 keILkgvnL~v~~GE----vhaiMGPNGsGKS-------TLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifL   85 (251)
T COG0396          17 KEILKGVNLTVKEGE----VHAIMGPNGSGKS-------TLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFL   85 (251)
T ss_pred             hhhhcCcceeEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEE
Confidence            489999999999999    7889999999999       999999998  578999999999999874   457789999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhc-CCC--CCChhHHHHHHHHHcCCCc-cccCcCCC-CChHHHHHHHHHHHHhCCCCe
Q psy860           88 CPQFNGINEHLTAQEMLECFSALR-GIP--GVKSGPIIDYWIDLLGLTE-YRHRVSGR-YSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~-~~~--~~~~~~~~~~~l~~~~L~~-~~~~~~~~-LSgGqkQRv~IAraL~~~P~~  162 (178)
                      .||+|.-++..++.+.+....... +..  ..+....+++.++.+++++ +++|.++. +|||+|+|..|+.+++.+|++
T Consensus        86 afQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl  165 (251)
T COG0396          86 AFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKL  165 (251)
T ss_pred             eecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCE
Confidence            999999999999999888755432 111  2345567888999999984 88999976 999999999999999999999


Q ss_pred             EEeeCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYN  176 (178)
Q Consensus       163 lllDEPt~gLD~~~  176 (178)
                      .|||||-||||+.+
T Consensus       166 ~ILDE~DSGLDIda  179 (251)
T COG0396         166 AILDEPDSGLDIDA  179 (251)
T ss_pred             EEecCCCcCccHHH
Confidence            99999999999753

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.95  E-value=1.8e-28  Score=214.14  Aligned_cols=149  Identities=19%  Similarity=0.141  Sum_probs=123.8

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG   86 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig   86 (178)
                      +..+|..+.|+++|+++.+|+    -.+|+|+||+|||       ||++.+.|...|++|+|.....         -.++
T Consensus        10 s~~~g~~~l~~~~~l~~~~G~----riGLvG~NGaGKS-------TLLkilaG~~~~~~G~i~~~~~---------~~v~   69 (530)
T COG0488          10 SLAYGDRPLLENVSLTLNPGE----RIGLVGRNGAGKS-------TLLKILAGELEPDSGEVTRPKG---------LRVG   69 (530)
T ss_pred             EEeeCCceeecCCcceeCCCC----EEEEECCCCCCHH-------HHHHHHcCCCcCCCCeEeecCC---------ceEE
Confidence            345577889999999999999    7779999999999       9999999999999999865432         1599


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHH-h-----------------------------cCCCCCChhHHHHHHHHHcCCCcccc
Q psy860           87 YCPQFNGINEHLTAQEMLECFSA-L-----------------------------RGIPGVKSGPIIDYWIDLLGLTEYRH  136 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~-~-----------------------------~~~~~~~~~~~~~~~l~~~~L~~~~~  136 (178)
                      |++|++.+.+..||.+.+..... .                             ..+...+.+.++..++..+|+.+. +
T Consensus        70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~  148 (530)
T COG0488          70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D  148 (530)
T ss_pred             EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence            99999999999899886654210 0                             001112334677888898999876 9


Q ss_pred             CcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          137 RVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       137 ~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +++++||||||.||+||+||+.+||+|+||||||+||..+
T Consensus       149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~  188 (530)
T COG0488         149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLES  188 (530)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHH
Confidence            9999999999999999999999999999999999999865

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.95  E-value=2e-28  Score=208.33  Aligned_cols=146  Identities=23%  Similarity=0.168  Sum_probs=118.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .+++++|||.+.+||    ..+|+||+|+|||       ||.+.++|.-+|.+|.|.+||-++.+  ..++-++|||+||
T Consensus       349 ~pil~~isF~l~~G~----~lgIIGPSgSGKS-------TLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQ  417 (580)
T COG4618         349 KPILKGISFALQAGE----ALGIIGPSGSGKS-------TLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ  417 (580)
T ss_pred             CcceecceeEecCCc----eEEEECCCCccHH-------HHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcc
Confidence            689999999999999    7779999999999       99999999999999999999998876  4567789999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHH-------cCCCccccCcC----CCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDL-------LGLTEYRHRVS----GRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-------~~L~~~~~~~~----~~LSgGqkQRv~IAraL~~~  159 (178)
                      +-.+|+. |+.||+.-|..      +.+.+.+-++.+.       +.+.+--|..+    ..||||||||+++||||..+
T Consensus       418 dVeLF~G-TIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~  490 (580)
T COG4618         418 DVELFDG-TIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD  490 (580)
T ss_pred             cceecCC-cHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence            9998876 99999975421      1122222222222       23444444544    36999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~  176 (178)
                      |.+++||||-|+||...
T Consensus       491 P~lvVLDEPNsNLD~~G  507 (580)
T COG4618         491 PFLVVLDEPNSNLDSEG  507 (580)
T ss_pred             CcEEEecCCCCCcchhH
Confidence            99999999999999754

>KOG0056|consensus

Probab=99.95  E-value=2.6e-29  Score=213.33  Aligned_cols=158  Identities=17%  Similarity=0.157  Sum_probs=123.6

Q ss_pred             hhhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh
Q psy860            3 LFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ   80 (178)
Q Consensus         3 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~   80 (178)
                      -|.|++|.   ++|+||||++.+|+    -.|++|++|+|||       |+++.+.++..-++|.|.+||+++.+.  ..
T Consensus       544 tF~Y~p~k---~vl~disF~v~pGk----tvAlVG~SGaGKS-------TimRlLfRffdv~sGsI~iDgqdIrnvt~~S  609 (790)
T KOG0056|consen  544 TFAYDPGK---PVLSDISFTVQPGK----TVALVGPSGAGKS-------TIMRLLFRFFDVNSGSITIDGQDIRNVTQSS  609 (790)
T ss_pred             EEecCCCC---ceeecceEEecCCc----EEEEECCCCCchh-------HHHHHHHHHhhccCceEEEcCchHHHHHHHH
Confidence            37898888   89999999999999    7889999999999       999999999999999999999999875  46


Q ss_pred             hccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHH---HHHcCCCccccCcCC----CCChHHHHHHHHH
Q psy860           81 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYW---IDLLGLTEYRHRVSG----RYSGGNKRKLSTA  153 (178)
Q Consensus        81 ~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~---l~~~~L~~~~~~~~~----~LSgGqkQRv~IA  153 (178)
                      +|+.||.|||+..+| +-|+..|+.+..-  ....++..+.++.+   =+.++.++.-+.+++    .|||||||||+||
T Consensus       610 LRs~IGVVPQDtvLF-NdTI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA  686 (790)
T KOG0056|consen  610 LRSSIGVVPQDTVLF-NDTILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA  686 (790)
T ss_pred             HHHhcCcccCcceee-cceeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence            899999999998876 4578788865310  11112212211111   122444443344444    6999999999999


Q ss_pred             HHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          154 MALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       154 raL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |++..+|.+++|||.||+||-.+.
T Consensus       687 RtiLK~P~iIlLDEATSALDT~tE  710 (790)
T KOG0056|consen  687 RTILKAPSIILLDEATSALDTNTE  710 (790)
T ss_pred             HHHhcCCcEEEEcchhhhcCCccH
Confidence            999999999999999999997654

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=2.2e-28  Score=185.65  Aligned_cols=153  Identities=14%  Similarity=0.047  Sum_probs=131.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--cHHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--HLFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~~~~~~~~ig~v~Q   90 (178)
                      ..+++.|||++++|+    -.|++|.||+|||       ||.+.+.|+.+|++|++.++++...  +.....++|-++||
T Consensus        26 ~~AV~~vSFtL~~~Q----TlaiIG~NGSGKS-------TLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQ   94 (267)
T COG4167          26 VEAVKPVSFTLREGQ----TLAIIGENGSGKS-------TLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQ   94 (267)
T ss_pred             hhcccceEEEecCCc----EEEEEccCCCcHh-------HHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeec
Confidence            568999999999999    6779999999999       9999999999999999999999764  34333467999999


Q ss_pred             CCC--CCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCC-CccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           91 FNG--INEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGL-TEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        91 ~~~--l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      +|+  +.|.+.+-+.+..+.+.. .+......+++.+-|+.+|| .+.++-++..||-||||||++||||+.+|+++|.|
T Consensus        95 Dpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaD  174 (267)
T COG4167          95 DPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIAD  174 (267)
T ss_pred             CCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEeh
Confidence            974  788888888777766554 23344455678899999999 48899999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          167 LPFSSQNLYN  176 (178)
Q Consensus       167 EPt~gLD~~~  176 (178)
                      |..++||...
T Consensus       175 eAl~~LD~sm  184 (267)
T COG4167         175 EALASLDMSM  184 (267)
T ss_pred             hhhhhccHHH
Confidence            9999999754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.95  E-value=1.8e-28  Score=187.45  Aligned_cols=115  Identities=11%  Similarity=0.148  Sum_probs=95.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      +++|+||||+|+.||    ..+|+|+||+|||       ||++.+.    +++|++.+++... .  ..++.++|++|  
T Consensus         8 ~~~l~~isl~i~~G~----~~~l~G~nG~GKS-------TLl~~il----~~~G~v~~~~~~~-~--~~~~~~~~~~q--   67 (176)
T cd03238           8 VHNLQNLDVSIPLNV----LVVVTGVSGSGKS-------TLVNEGL----YASGKARLISFLP-K--FSRNKLIFIDQ--   67 (176)
T ss_pred             eeeecceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHh----hcCCcEEECCccc-c--cccccEEEEhH--
Confidence            689999999999999    8889999999999       9998774    3688887765421 1  11234777766  


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCC--CCeEEeeCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGD--RDDGFQKLPF  169 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~--P~~lllDEPt  169 (178)
                                                    .++++.+++.. ..++++.+||+|||||++|||||+.+  |++++|||||
T Consensus        68 ------------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt  117 (176)
T cd03238          68 ------------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS  117 (176)
T ss_pred             ------------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence                                          24678889875 47899999999999999999999999  9999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      ++||+.++
T Consensus       118 ~~LD~~~~  125 (176)
T cd03238         118 TGLHQQDI  125 (176)
T ss_pred             ccCCHHHH
Confidence            99998754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.94  E-value=1.7e-28  Score=181.90  Aligned_cols=94  Identities=21%  Similarity=0.166  Sum_probs=88.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++++++||++++||    ..+|+|+||+|||       ||++++.|+.+|++|++++++.         +.++|+||  
T Consensus        13 ~~~l~~~~~~~~~Ge----~~~i~G~nGsGKS-------tLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~~--   70 (144)
T cd03221          13 KLLLKDISLTINPGD----RIGLVGRNGAGKS-------TLLKLIAGELEPDEGIVTWGST---------VKIGYFEQ--   70 (144)
T ss_pred             ceEEEeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCceEEEECCe---------EEEEEEcc--
Confidence            369999999999999    7889999999999       9999999999999999999874         36999998  


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                                                                       ||+||+||++|||||+.+|+++++||||+||
T Consensus        71 -------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~L  101 (144)
T cd03221          71 -------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHL  101 (144)
T ss_pred             -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence                                                             9999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       102 D~~~~  106 (144)
T cd03221         102 DLESI  106 (144)
T ss_pred             CHHHH
Confidence            98754

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.94  E-value=3.5e-28  Score=233.58  Aligned_cols=143  Identities=20%  Similarity=0.164  Sum_probs=114.3

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhcc
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLS   83 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~   83 (178)
                      |.|+.. ...++|+||||+|++||    ..+|+|++|||||       ||++.+.|..+|++|.+.          .+++
T Consensus       622 F~y~~~-~~~~vL~~inl~i~~Ge----~vaIvG~sGSGKS-------TLl~lLlG~~~~~~G~i~----------~~~~  679 (1495)
T PLN03232        622 FSWDSK-TSKPTLSDINLEIPVGS----LVAIVGGTGEGKT-------SLISAMLGELSHAETSSV----------VIRG  679 (1495)
T ss_pred             EEcCCC-CCCceeeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCcccCCCEE----------EecC
Confidence            556432 12468999999999999    8889999999999       999999999999988752          3456


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cCc----CCCCChHHHHHHHH
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HRV----SGRYSGGNKRKLST  152 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~LSgGqkQRv~I  152 (178)
                      .|+||+|++.++. -|++||+.++..       ...++..++++..++.+..       +..    -.+||||||||++|
T Consensus       680 ~Iayv~Q~p~Lf~-gTIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL  751 (1495)
T PLN03232        680 SVAYVPQVSWIFN-ATVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSM  751 (1495)
T ss_pred             cEEEEcCcccccc-ccHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHH
Confidence            8999999999875 699999987521       2245566677766654222       222    34699999999999


Q ss_pred             HHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          153 AMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       153 AraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      |||+..+|++++||||||+||+.+
T Consensus       752 ARAly~~~~IlLLDEptSaLD~~t  775 (1495)
T PLN03232        752 ARAVYSNSDIYIFDDPLSALDAHV  775 (1495)
T ss_pred             HHHHhcCCCEEEEcCCccccCHHH
Confidence            999999999999999999999864

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.94  E-value=9.9e-28  Score=206.17  Aligned_cols=152  Identities=19%  Similarity=0.195  Sum_probs=129.4

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--cH-HhhccceEEecCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--HL-FQYLSGIGYCPQF   91 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~~-~~~~~~ig~v~Q~   91 (178)
                      .++||||++++||    +.+|.|.-|+|+|       -++.++.|..++++|+|.++|+++.  .+ ..++.+|+|||++
T Consensus       274 ~~~dvSf~vr~GE----IlGiaGLvGaGRT-------El~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~ED  342 (500)
T COG1129         274 KVRDVSFTVRAGE----ILGIAGLVGAGRT-------ELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPED  342 (500)
T ss_pred             ceeCceeEEeCCc----EEEEeccccCCHH-------HHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcc
Confidence            5899999999999    4558899999999       7778899999999999999999764  33 3567899999998


Q ss_pred             C---CCCCCCCHHHHHHHHHHhc-----CCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           92 N---GINEHLTAQEMLECFSALR-----GIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        92 ~---~l~~~ltv~e~l~~~~~~~-----~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      .   +++..+++.+|+.+.....     .+...+.++.++++.+.+++. +..++.+.+||||+||||.|||||+.+|++
T Consensus       343 Rk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~v  422 (500)
T COG1129         343 RKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV  422 (500)
T ss_pred             cccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCE
Confidence            4   7899999999998762111     244455566788999999996 677899999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      |||||||.|+|+-++
T Consensus       423 LilDEPTRGIDVGAK  437 (500)
T COG1129         423 LILDEPTRGIDVGAK  437 (500)
T ss_pred             EEECCCCcCcccchH
Confidence            999999999998654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.94  E-value=6.4e-28  Score=231.65  Aligned_cols=135  Identities=19%  Similarity=0.117  Sum_probs=109.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++.++|           .|+||+|++
T Consensus       439 ~~~l~~i~l~i~~G~----~~~I~G~~GsGKS-------TLl~~l~G~~~~~~G~i~~~g-----------~iayv~Q~~  496 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQ----LLAVAGSTGSGKS-------SLLMMIMGELEPSEGKIKHSG-----------RISFSPQTS  496 (1490)
T ss_pred             CcceeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECC-----------EEEEEeCCC
Confidence            468999999999999    7889999999999       999999999999999998876           499999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-----------ccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-----------EYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      .+++ .|++||+.|....   .    .++..++++..++.           .....+..+|||||||||+||||++.+|+
T Consensus       497 ~l~~-~Ti~eNI~~g~~~---~----~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~  568 (1490)
T TIGR01271       497 WIMP-GTIKDNIIFGLSY---D----EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDAD  568 (1490)
T ss_pred             ccCC-ccHHHHHHhcccc---c----hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCC
Confidence            9876 4999999875321   1    11122222222221           12344578999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      ++|||||||+||+.++
T Consensus       569 illLDep~saLD~~~~  584 (1490)
T TIGR01271       569 LYLLDSPFTHLDVVTE  584 (1490)
T ss_pred             EEEEeCCcccCCHHHH
Confidence            9999999999998753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.94  E-value=9.7e-28  Score=231.39  Aligned_cols=142  Identities=21%  Similarity=0.206  Sum_probs=114.7

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc-ccccccccccccHHhhc
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA-AQNSLLMTNIMHLFQYL   82 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~-g~i~~~g~~~~~~~~~~   82 (178)
                      |.|++. ...++|+||||+|++||    ..+|+|++|+|||       ||++.+.|..+|++ |.+.           ++
T Consensus       622 f~y~~~-~~~~vL~~inl~i~~Ge----~vaIvG~sGSGKS-------TLl~lLlG~~~~~~GG~I~-----------l~  678 (1622)
T PLN03130        622 FSWDSK-AERPTLSNINLDVPVGS----LVAIVGSTGEGKT-------SLISAMLGELPPRSDASVV-----------IR  678 (1622)
T ss_pred             EEccCC-CCCceeeceeEEecCCC----EEEEECCCCCCHH-------HHHHHHHHhhccCCCceEE-----------Ec
Confidence            556432 12468999999999999    8889999999999       99999999999999 8885           35


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccCc----CCCCChHHHHHHH
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHRV----SGRYSGGNKRKLS  151 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~----~~~LSgGqkQRv~  151 (178)
                      ..|+||+|++.++. -|++||+.|+..       ...++..++++..++.+.       .+..    -.+|||||||||+
T Consensus       679 ~~Iayv~Q~p~Lfn-gTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa  750 (1622)
T PLN03130        679 GTVAYVPQVSWIFN-ATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS  750 (1622)
T ss_pred             CeEEEEcCccccCC-CCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence            57999999999865 699999987521       124566677776665432       1223    3469999999999


Q ss_pred             HHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          152 TAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       152 IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      ||||+..+|++++||||||+||+.+
T Consensus       751 LARAly~~~~IlLLDEptSALD~~~  775 (1622)
T PLN03130        751 MARAVYSNSDVYIFDDPLSALDAHV  775 (1622)
T ss_pred             HHHHHhCCCCEEEECCCccccCHHH
Confidence            9999999999999999999999864

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.94  E-value=5.3e-28  Score=185.00  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=88.0

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEec
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP   89 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~   89 (178)
                      +|..++++++ |+|++||    +.+|+|+||+|||       ||++++.|+.+|++|+|.++|.          .++|++
T Consensus        10 ~~~~~~l~~~-~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~----------~i~~~~   67 (177)
T cd03222          10 YGVFFLLVEL-GVVKEGE----VIGIVGPNGTGKT-------TAVKILAGQLIPNGDNDEWDGI----------TPVYKP   67 (177)
T ss_pred             ECCEEEEccC-cEECCCC----EEEEECCCCChHH-------HHHHHHHcCCCCCCcEEEECCE----------EEEEEc
Confidence            3456788884 9999999    7889999999999       9999999999999999988875          378998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |++.                                                ||||||||++|||||+.+|++++|||||
T Consensus        68 q~~~------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPt   99 (177)
T cd03222          68 QYID------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPS   99 (177)
T ss_pred             ccCC------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            8642                                                9999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      ++||+.++
T Consensus       100 s~LD~~~~  107 (177)
T cd03222         100 AYLDIEQR  107 (177)
T ss_pred             ccCCHHHH
Confidence            99998764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.9e-27  Score=178.32  Aligned_cols=154  Identities=14%  Similarity=0.128  Sum_probs=118.8

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--c---HH
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--H---LF   79 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~---~~   79 (178)
                      .|-.++    ..+||||++.+||    ..+|+|.+|+||+       ||++|+.+-..|++|++.+..+.-.  +   ..
T Consensus        15 ~Yg~~~----gc~~vsF~l~PGe----VLgiVGESGSGKt-------TLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms   79 (258)
T COG4107          15 LYGPGK----GCRDVSFDLYPGE----VLGIVGESGSGKT-------TLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS   79 (258)
T ss_pred             hhCCCc----CccccceeecCCc----EEEEEecCCCcHH-------hHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence            454555    5689999999999    4559999999999       9999999999999999977664321  1   11


Q ss_pred             ------hhccceEEecCCCC--CCCCCCHHHHH----HH-HHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChH
Q psy860           80 ------QYLSGIGYCPQFNG--INEHLTAQEML----EC-FSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGG  145 (178)
Q Consensus        80 ------~~~~~ig~v~Q~~~--l~~~ltv~e~l----~~-~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG  145 (178)
                            -.|..-|+|-|+|.  +....+.-.|+    .. ..+.+    ..+++.+.+||+++.++ ...|..|.++|||
T Consensus        80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY----G~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG  155 (258)
T COG4107          80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY----GNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG  155 (258)
T ss_pred             hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh----hhHHHHHHHHHHhcccCcccccCcccccchH
Confidence                  13456899999973  43333332233    21 22222    25677899999999997 5668899999999


Q ss_pred             HHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          146 NKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       146 qkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ||||+.|||-|++.|+++|+||||.|||+.-+
T Consensus       156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQ  187 (258)
T COG4107         156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQ  187 (258)
T ss_pred             HHHHHHHHHHhccCCceEEecCCCCCcchhhH
Confidence            99999999999999999999999999998643

>PTZ00243 ABC transporter; Provisional

Probab=99.94  E-value=2.9e-27  Score=227.68  Aligned_cols=138  Identities=19%  Similarity=0.183  Sum_probs=111.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.++|..+|++|++.+           ++.|+||||++
T Consensus       673 ~~iL~~isl~i~~G~----~~~IiG~nGsGKS-------TLL~~i~G~~~~~~G~i~~-----------~~~i~yv~Q~~  730 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGK----LTVVLGATGSGKS-------TLLQSLLSQFEISEGRVWA-----------ERSIAYVPQQA  730 (1560)
T ss_pred             ceeEeeeEEEECCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCcEEEE-----------CCeEEEEeCCC
Confidence            468999999999999    8889999999999       9999999999999999864           24699999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhH-----HHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGP-----IIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      .++ +.|++||+.++....   ..+..+     .+++.++.+  |+....+++..+|||||||||+|||||+.+|++++|
T Consensus       731 ~l~-~~Tv~enI~~~~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illL  806 (1560)
T PTZ00243        731 WIM-NATVRGNILFFDEED---AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLL  806 (1560)
T ss_pred             ccC-CCcHHHHHHcCChhh---HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            875 579999998742110   000001     122334444  565566788999999999999999999999999999


Q ss_pred             eCCCCCCCCCC
Q psy860          166 KLPFSSQNLYN  176 (178)
Q Consensus       166 DEPt~gLD~~~  176 (178)
                      |||||+||+..
T Consensus       807 DEP~saLD~~~  817 (1560)
T PTZ00243        807 DDPLSALDAHV  817 (1560)
T ss_pred             cCccccCCHHH
Confidence            99999999864

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.93  E-value=1.8e-27  Score=178.19  Aligned_cols=102  Identities=25%  Similarity=0.281  Sum_probs=93.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      ++++++||+|++|+    ..+|+|+||+|||       |+++.+.|+.+|++|++++++.++..  ..+.++.++|+|| 
T Consensus        13 ~~l~~~~~~i~~g~----~~~i~G~nGsGKS-------tll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-   80 (157)
T cd00267          13 TALDNVSLTLKAGE----IVALVGPNGSGKS-------TLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-   80 (157)
T ss_pred             eeEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-
Confidence            68999999999999    7889999999999       99999999999999999999987654  3455678999999 


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                                                                        ||+||+||++||||++.+|+++++||||+|
T Consensus        81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~  110 (157)
T cd00267          81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG  110 (157)
T ss_pred             --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence                                                              999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       111 lD~~~~  116 (157)
T cd00267         111 LDPASR  116 (157)
T ss_pred             CCHHHH
Confidence            998753

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.93  E-value=4.3e-27  Score=226.43  Aligned_cols=134  Identities=20%  Similarity=0.187  Sum_probs=109.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|..+|++|++.++|           .|+||||++
T Consensus       651 ~~~l~~isl~i~~G~----~v~IvG~~GsGKS-------TLl~~l~g~~~~~~G~i~~~g-----------~i~yv~Q~~  708 (1522)
T TIGR00957       651 PPTLNGITFSIPEGA----LVAVVGQVGCGKS-------SLLSALLAEMDKVEGHVHMKG-----------SVAYVPQQA  708 (1522)
T ss_pred             CceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCccCCcEEEECC-----------EEEEEcCCc
Confidence            369999999999999    8889999999999       999999999999999998876           499999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHH------cCC-----CccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDL------LGL-----TEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~------~~L-----~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      .++ +.|++||+.++...   .    .++.+++++.      ++.     ....+.+..+||||||||++||||++.+|+
T Consensus       709 ~l~-~~Ti~eNI~~g~~~---~----~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~  780 (1522)
T TIGR00957       709 WIQ-NDSLRENILFGKAL---N----EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD  780 (1522)
T ss_pred             ccc-CCcHHHHhhcCCcc---C----HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            875 57999999874211   1    1222333332      222     123346678999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYN  176 (178)
Q Consensus       162 ~lllDEPt~gLD~~~  176 (178)
                      +++||||||+||+.+
T Consensus       781 illLDEp~saLD~~~  795 (1522)
T TIGR00957       781 IYLFDDPLSAVDAHV  795 (1522)
T ss_pred             EEEEcCCccccCHHH
Confidence            999999999999865

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.93  E-value=1.9e-26  Score=181.38  Aligned_cols=142  Identities=14%  Similarity=0.091  Sum_probs=129.0

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC-
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ-   90 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q-   90 (178)
                      ...||+||||++++||    ..+|+|+||+|||       ||++.+.|..+|++|++.+.|+           ++++.. 
T Consensus        39 ~~~aL~disf~i~~Ge----~vGiiG~NGaGKS-------TLlkliaGi~~Pt~G~v~v~G~-----------v~~li~l   96 (249)
T COG1134          39 EFWALKDISFEIYKGE----RVGIIGHNGAGKS-------TLLKLIAGIYKPTSGKVKVTGK-----------VAPLIEL   96 (249)
T ss_pred             eEEEecCceEEEeCCC----EEEEECCCCCcHH-------HHHHHHhCccCCCCceEEEcce-----------Eehhhhc
Confidence            4679999999999999    7779999999999       9999999999999999988885           343333 


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ..++.|.+|.+||+.+...+.++.+++.+++++++.+.-.|.++.|+++.++|-||+-|++.|.|...+|++||+||-.+
T Consensus        97 g~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvla  176 (249)
T COG1134          97 GAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLA  176 (249)
T ss_pred             ccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhh
Confidence            23567889999999999989899889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          171 SQNLY  175 (178)
Q Consensus       171 gLD~~  175 (178)
                      --|+.
T Consensus       177 vGD~~  181 (249)
T COG1134         177 VGDAA  181 (249)
T ss_pred             cCCHH
Confidence            88864

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=8.6e-27  Score=194.79  Aligned_cols=152  Identities=18%  Similarity=0.185  Sum_probs=118.5

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~   81 (178)
                      |.|..   ..++|+++||+++.|+    -.|++|++|+||+       |+++.+.++..+++|.|.++|+++.++  ..+
T Consensus       270 F~y~~---~r~iL~~isf~i~~g~----tvAiVg~SG~gKs-------TI~rllfRFyD~~sG~I~id~qdir~vtq~sl  335 (497)
T COG5265         270 FAYDP---RRPILNGISFTIPLGK----TVAIVGESGAGKS-------TILRLLFRFYDVNSGSITIDGQDIRDVTQQSL  335 (497)
T ss_pred             eeccc---cchhhcCccccccCcc----EEEEEeCCCCcHH-------HHHHHHHHHhCCcCceEEEcchhHHHhHHHHH
Confidence            45533   3589999999999999    7789999999999       999999999999999999999999875  457


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-------CCccccCcCC----CCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-------LTEYRHRVSG----RYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~~~~~~~----~LSgGqkQRv  150 (178)
                      |+.||.|||+..+| +-|...|+.+..     +. ...+.+..+.+...       +++..+..++    .|||||||||
T Consensus       336 R~aIg~VPQDtvLF-NDti~yni~ygr-----~~-at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrv  408 (497)
T COG5265         336 RRAIGIVPQDTVLF-NDTIAYNIKYGR-----PD-ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV  408 (497)
T ss_pred             HHHhCcCcccceeh-hhhHHHHHhccC-----cc-ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHH
Confidence            88999999998876 457777776531     11 11222222223222       2333344444    5999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||+++.+|++|+|||.||+||-.+
T Consensus       409 aiar~ilk~p~il~~deatsaldt~t  434 (497)
T COG5265         409 AIARTILKNPPILILDEATSALDTHT  434 (497)
T ss_pred             HHHHHHhcCCCEEEEehhhhHhhhhH
Confidence            99999999999999999999999765

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.92  E-value=1.2e-25  Score=178.05  Aligned_cols=147  Identities=12%  Similarity=0.055  Sum_probs=93.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc-------cc---c--ccHHh
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM-------TN---I--MHLFQ   80 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g-------~~---~--~~~~~   80 (178)
                      ..+|++|||+|++||    +.+|+|+||||||       ||+...+.    ..|.+.+..       ..   .  .+..+
T Consensus         8 ~~~l~~vsl~i~~Ge----~~~l~G~sGsGKS-------TL~~~~i~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (226)
T cd03270           8 EHNLKNVDVDIPRNK----LVVITGVSGSGKS-------SLAFDTIY----AEGQRRYVESLSAYARQFLGQMDKPDVDS   72 (226)
T ss_pred             hhccccceeecCCCc----EEEEEcCCCCCHH-------HHHHHHHH----HHHHHHHhhcccchhhhhhcccCcccccc
Confidence            379999999999999    8889999999999       66421111    122221100       00   0  01111


Q ss_pred             hc-cceEEecCCC--CCCCCCCHHH---HHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHH
Q psy860           81 YL-SGIGYCPQFN--GINEHLTAQE---MLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTA  153 (178)
Q Consensus        81 ~~-~~ig~v~Q~~--~l~~~ltv~e---~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IA  153 (178)
                      .+ ....+..|++  ...+..++..   ...++....  ......++ .++++.+++.+ ..++++.+|||||||||+||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  149 (226)
T cd03270          73 IEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLA  149 (226)
T ss_pred             ccCCCceEEecCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHH
Confidence            11 1234444443  2334445432   222222111  12222333 56899999986 58999999999999999999


Q ss_pred             HHHhCCC--CeEEeeCCCCCCCCCCC
Q psy860          154 MALIGDR--DDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       154 raL~~~P--~~lllDEPt~gLD~~~~  177 (178)
                      |||+.+|  +++||||||+|||+.++
T Consensus       150 ral~~~p~~~llllDEPt~gLD~~~~  175 (226)
T cd03270         150 TQIGSGLTGVLYVLDEPSIGLHPRDN  175 (226)
T ss_pred             HHHHhCCCCCEEEEeCCccCCCHHHH
Confidence            9999998  59999999999998754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.92  E-value=6e-26  Score=198.27  Aligned_cols=139  Identities=19%  Similarity=0.158  Sum_probs=118.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++++++||.|..|+    -.+|+|+||+|||       ||++.++|-..|.+|.|.+.-. +        .+||.+|+.
T Consensus       335 ~~l~~~~s~~i~~g~----riaiiG~NG~GKS-------TLlk~l~g~~~~~~G~v~~g~~-v--------~igyf~Q~~  394 (530)
T COG0488         335 RLLLKDLSFRIDRGD----RIAIVGPNGAGKS-------TLLKLLAGELGPLSGTVKVGET-V--------KIGYFDQHR  394 (530)
T ss_pred             ceeecCceEEecCCC----EEEEECCCCCCHH-------HHHHHHhhhcccCCceEEeCCc-e--------EEEEEEehh
Confidence            579999999999999    7889999999999       9999999999999998844322 2        599999987


Q ss_pred             -CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           93 -GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        93 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                       .+.++.|+.|++.-..     + ......+..+|..|++. +...+++..||||||-||.+|+.++.+|.+||||||||
T Consensus       395 ~~l~~~~t~~d~l~~~~-----~-~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTN  468 (530)
T COG0488         395 DELDPDKTVLEELSEGF-----P-DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTN  468 (530)
T ss_pred             hhcCccCcHHHHHHhhC-----c-cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCc
Confidence             4557778988876421     1 11156788999999997 67789999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      .||+.++
T Consensus       469 hLDi~s~  475 (530)
T COG0488         469 HLDIESL  475 (530)
T ss_pred             cCCHHHH
Confidence            9998753

>PLN03073 ABC transporter F family; Provisional

Probab=99.92  E-value=1.6e-26  Score=208.82  Aligned_cols=156  Identities=15%  Similarity=0.080  Sum_probs=108.6

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC---Cccccccccccccc-----cc-----
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS---PFQAAQNSLLMTNI-----MH-----   77 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~---~~~~g~i~~~g~~~-----~~-----   77 (178)
                      |..++|+|+||+|..|+    ..+|+|+||+|||       ||++.+.|..   .|+.|.|.+..+++     ..     
T Consensus       188 ~~~~ll~~isl~i~~Ge----~~gLvG~NGsGKS-------TLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~  256 (718)
T PLN03073        188 GGRDLIVDASVTLAFGR----HYGLVGRNGTGKT-------TFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVL  256 (718)
T ss_pred             CCCEEEECCEEEECCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHH
Confidence            33469999999999999    8889999999999       9999998853   56777775433321     10     


Q ss_pred             ------HHhhccceEEecCCCCCCCC-C---------------CHHHHHHH-HHHhcCCCCCChhHHHHHHHHHcCCC-c
Q psy860           78 ------LFQYLSGIGYCPQFNGINEH-L---------------TAQEMLEC-FSALRGIPGVKSGPIIDYWIDLLGLT-E  133 (178)
Q Consensus        78 ------~~~~~~~ig~v~Q~~~l~~~-l---------------tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~L~-~  133 (178)
                            ....++.+++++|++.+... .               .+.+.+.- ...+.........+++.++++.+|+. +
T Consensus       257 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~  336 (718)
T PLN03073        257 NTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE  336 (718)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence                  00112346677765432110 0               01111111 11111122234556788899999996 5


Q ss_pred             cccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          134 YRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       134 ~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ..++++.+|||||||||+||+||+.+|++|||||||++||+.++
T Consensus       337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~  380 (718)
T PLN03073        337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV  380 (718)
T ss_pred             HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence            67889999999999999999999999999999999999998754

>KOG0054|consensus

Probab=99.91  E-value=3.6e-25  Score=207.54  Aligned_cols=151  Identities=17%  Similarity=0.112  Sum_probs=123.9

Q ss_pred             hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhc
Q psy860            5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYL   82 (178)
Q Consensus         5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~   82 (178)
                      .|.++-  -+||+||||+|++||    -.+|+|.+|+|||       ||+..+.++..|.+|+|.+||.++.+  +.++|
T Consensus      1147 RYrp~l--p~VLk~is~~I~p~e----KVGIVGRTGaGKS-------SL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1147 RYRPNL--PLVLKGISFTIKPGE----KVGIVGRTGAGKS-------SLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred             EeCCCC--cchhcCceEEEcCCc----eEEEeCCCCCCHH-------HHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence            355543  479999999999999    6669999999999       99999999999999999999999986  57899


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccCc----CCCCChHHHHHHH
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHRV----SGRYSGGNKRKLS  151 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~----~~~LSgGqkQRv~  151 (178)
                      ++++.+||+|.+|.. |+|.|+.-+..+       ..+.+=++||..+|.+.       .|..    -.++|-||||-|+
T Consensus      1214 srlsIIPQdPvLFsG-TvR~NLDPf~e~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlC 1285 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSG-TVRFNLDPFDEY-------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLC 1285 (1381)
T ss_pred             hcCeeeCCCCceecC-ccccccCccccc-------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHH
Confidence            999999999999876 899888643221       13345555666555432       2222    3579999999999


Q ss_pred             HHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          152 TAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       152 IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +||||+.+++||+|||.|+++|+.+
T Consensus      1286 LARALLr~skILvLDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1286 LARALLRKSKILVLDEATASVDPET 1310 (1381)
T ss_pred             HHHHHhccCCEEEEecccccCChHH
Confidence            9999999999999999999999864

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.91  E-value=3.3e-25  Score=172.28  Aligned_cols=127  Identities=10%  Similarity=-0.008  Sum_probs=95.6

Q ss_pred             cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc---------ccccccccccccHHhhccceEE
Q psy860           17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA---------AQNSLLMTNIMHLFQYLSGIGY   87 (178)
Q Consensus        17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~---------g~i~~~g~~~~~~~~~~~~ig~   87 (178)
                      ++++++++.|     +.+|+|+||+|||       ||+..+.++.++..         +++.+.+.+.... ..++.++|
T Consensus        14 ~~~~l~~~~g-----~~~i~G~nGsGKS-------tll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~   80 (197)
T cd03278          14 DKTTIPFPPG-----LTAIVGPNGSGKS-------NIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP-ANFAEVTL   80 (197)
T ss_pred             CCeeeecCCC-----cEEEECCCCCCHH-------HHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC-CceEEEEE
Confidence            6788999987     4569999999999       88888887765542         3455555544321 23467999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh----CCCCeE
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI----GDRDDG  163 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~----~~P~~l  163 (178)
                      +||++..+.               ..   ...+++.++++.   .+..++.+.+||+|||||++||++|+    .+|+++
T Consensus        81 vfq~~~~~~---------------~~---~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~il  139 (197)
T cd03278          81 TFDNSDGRY---------------SI---ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFC  139 (197)
T ss_pred             EEEcCCCce---------------eE---EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEE
Confidence            999987651               00   013456677776   56678899999999999999999997    467999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      +|||||+|||+.++
T Consensus       140 llDEP~~~LD~~~~  153 (197)
T cd03278         140 VLDEVDAALDDANV  153 (197)
T ss_pred             EEeCCcccCCHHHH
Confidence            99999999998753

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.89  E-value=4.1e-24  Score=172.50  Aligned_cols=148  Identities=14%  Similarity=0.091  Sum_probs=107.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh-----cc-----CCcccc-----------ccccc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI-----RF-----SPFQAA-----------QNSLL   71 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~-----~~-----~~~~~g-----------~i~~~   71 (178)
                      ...|+|||++|+.|.    +++|.|++|||||       ||+...+     +.     ..|..+           .+.++
T Consensus         8 ~~nl~~v~~~ip~g~----~~~vtGvSGsGKS-------tL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vd   76 (261)
T cd03271           8 ENNLKNIDVDIPLGV----LTCVTGVSGSGKS-------SLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVID   76 (261)
T ss_pred             hhcCCCceeeccCCc----EEEEECCCCCchH-------HHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEec
Confidence            357999999999999    8889999999999       6666442     10     012111           23444


Q ss_pred             cccccc-----H-------Hhhcc----------------ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHH
Q psy860           72 MTNIMH-----L-------FQYLS----------------GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIID  123 (178)
Q Consensus        72 g~~~~~-----~-------~~~~~----------------~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~  123 (178)
                      ..++..     +       .++|+                .+.|..++...+.++|+.|++.|+.....      .+++.
T Consensus        77 q~pi~~~~rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~  150 (261)
T cd03271          77 QSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKL  150 (261)
T ss_pred             CCcCCCCCCCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHH
Confidence            444421     0       11111                14455555555678999999988765432      24577


Q ss_pred             HHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCC---CCeEEeeCCCCCCCCCCC
Q psy860          124 YWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGD---RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       124 ~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~---P~~lllDEPt~gLD~~~~  177 (178)
                      ++++.+||.. ..++++.+|||||+||+.||++|+.+   |++++|||||+|||+..+
T Consensus       151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~  208 (261)
T cd03271         151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDV  208 (261)
T ss_pred             HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHH
Confidence            8999999986 57999999999999999999999996   799999999999998753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0065|consensus

Probab=99.89  E-value=2.3e-24  Score=199.23  Aligned_cols=154  Identities=20%  Similarity=0.213  Sum_probs=132.4

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-C-CcccccccccccccccHHhhccceEEe
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-S-PFQAAQNSLLMTNIMHLFQYLSGIGYC   88 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~-~~~~g~i~~~g~~~~~~~~~~~~ig~v   88 (178)
                      +-...|+||+=-+.+|-    ++||.|+||+|||       ||+.++.+- . .--.|+|.++|.+..+ ...+|.+|||
T Consensus       802 ~~~qLL~~V~G~~kPG~----LTALMG~SGAGKT-------TLLdvLA~R~t~G~I~Gdi~i~G~p~~q-~tF~R~~GYv  869 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGV----LTALMGESGAGKT-------TLLDVLAGRKTGGYIEGDILISGFPKDQ-ETFARVSGYV  869 (1391)
T ss_pred             cceEhhhcCceEecCCc----eeehhcCCCCchH-------HHHHHHhcCcccceEEeEEEECCeeCch-hhhcccccee
Confidence            44678999999999998    7889999999999       999999876 2 2367888999987765 5567889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcC---CCCCChhHHHHHHHHHcCCCccccCcCCC----CChHHHHHHHHHHHHhCCC-
Q psy860           89 PQFNGINEHLTAQEMLECFSALRG---IPGVKSGPIIDYWIDLLGLTEYRHRVSGR----YSGGNKRKLSTAMALIGDR-  160 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~----LSgGqkQRv~IAraL~~~P-  160 (178)
                      -|++.-.+.+||+|.+.|.+.++.   ++.++..+.++++++.++|.+++|..++.    ||..||+|+.||--|+.+| 
T Consensus       870 qQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~  949 (1391)
T KOG0065|consen  870 EQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPS  949 (1391)
T ss_pred             ecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCc
Confidence            998766699999999999877763   23334447799999999999999999998    9999999999999999999 


Q ss_pred             CeEEeeCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~  176 (178)
                      .||+|||||||||..+
T Consensus       950 ~ilFLDEPTSGLDsqa  965 (1391)
T KOG0065|consen  950 SILFLDEPTSGLDSQA  965 (1391)
T ss_pred             eeEEecCCCCCccHHH
Confidence            9999999999999764

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.89  E-value=5e-24  Score=169.80  Aligned_cols=149  Identities=8%  Similarity=0.010  Sum_probs=98.7

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh----------------ccCCcccc--------c
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI----------------RFSPFQAA--------Q   67 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~----------------~~~~~~~g--------~   67 (178)
                      ...++++++     ++    +.+|+|+||+|||       ||+..+.                ++..+.+|        +
T Consensus        14 ~~~~~~~~~-----~~----~~~i~GpNGsGKS-------tll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~   77 (243)
T cd03272          14 DQTVIEPFS-----PK----HNVVVGRNGSGKS-------NFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE   77 (243)
T ss_pred             cCcccccCC-----CC----cEEEECCCCCCHH-------HHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence            345677776     45    7789999999999       7777665                23333344        3


Q ss_pred             cccccccc----c-cHHhhccceEEecCCCCCCC-CCCHHHHHHHHHHhcCCCCCChh--HHHHHHHHHcCCCccccCcC
Q psy860           68 NSLLMTNI----M-HLFQYLSGIGYCPQFNGINE-HLTAQEMLECFSALRGIPGVKSG--PIIDYWIDLLGLTEYRHRVS  139 (178)
Q Consensus        68 i~~~g~~~----~-~~~~~~~~ig~v~Q~~~l~~-~ltv~e~l~~~~~~~~~~~~~~~--~~~~~~l~~~~L~~~~~~~~  139 (178)
                      +.+++.+-    . ....+++.+++++|+..+++ ..|..|...+.... +.......  ....++.+.+++.+..++++
T Consensus        78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~  156 (243)
T cd03272          78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKINSLTNMKQDEQQEM  156 (243)
T ss_pred             EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCchHHhhhccccccccc
Confidence            33333211    0 11234567999999887777 46776655554443 33321110  01123444566666678899


Q ss_pred             CCCChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCCC
Q psy860          140 GRYSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       140 ~~LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~~  177 (178)
                      .+||||||||++|||||+.    +|+++++||||+||||.++
T Consensus       157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~  198 (243)
T cd03272         157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYR  198 (243)
T ss_pred             cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHH
Confidence            9999999999999999973    6899999999999999754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.88  E-value=3e-25  Score=174.34  Aligned_cols=138  Identities=12%  Similarity=0.056  Sum_probs=101.5

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhc-cceEEec
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYL-SGIGYCP   89 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~-~~ig~v~   89 (178)
                      +...+++++++     +    +.+|+||||+|||       |++..+.          +++|.+..   ..+ +.+++++
T Consensus        15 ~~~~~l~~~~~-----~----i~~ivGpNGaGKS-------Tll~~i~----------~~~G~~~~---~~~~~~i~~~~   65 (212)
T cd03274          15 AGEQVIGPFHK-----S----FSAIVGPNGSGKS-------NVIDSML----------FVFGFRAS---KMRQKKLSDLI   65 (212)
T ss_pred             CCCeeeccCCC-----C----eEEEECCCCCCHH-------HHHHHHH----------HHhccCHH---HhhhhhHHHHh
Confidence            44578888887     4    6779999999999       8887775          23333221   222 4699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHh--------cCCCCCChhH--HHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC-
Q psy860           90 QFNGINEHLTAQEMLECFSAL--------RGIPGVKSGP--IIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG-  158 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~--~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~-  158 (178)
                      |...+++.+++.++..++...        .+........  ...++++.+++.+..++++..||+|||||++||+|++. 
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~  145 (212)
T cd03274          66 HNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALH  145 (212)
T ss_pred             cCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhc
Confidence            998888888888866554322        2322211111  12566678888888889999999999999999999974 


Q ss_pred             ---CCCeEEeeCCCCCCCCCCC
Q psy860          159 ---DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ---~P~~lllDEPt~gLD~~~~  177 (178)
                         .|+++++||||+||||.++
T Consensus       146 ~~~~p~ililDEPt~gLD~~~~  167 (212)
T cd03274         146 HYKPTPLYVMDEIDAALDFRNV  167 (212)
T ss_pred             ccCCCCEEEEcCCCcCCCHHHH
Confidence               5899999999999999754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.88  E-value=2.3e-24  Score=173.04  Aligned_cols=139  Identities=10%  Similarity=0.025  Sum_probs=101.1

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-ccccccccc-cc-cc--H-HhhccceEEecCCC---------CCCC
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-AAQNSLLMT-NI-MH--L-FQYLSGIGYCPQFN---------GINE   96 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-~g~i~~~g~-~~-~~--~-~~~~~~ig~v~Q~~---------~l~~   96 (178)
                      +.+|+|+||+|||       |++..+.+++.++ .+.+...+. +. ..  . ...+..+++++|++         .+.+
T Consensus        27 ~~~IvG~NGsGKS-------tll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~   99 (251)
T cd03273          27 FNAITGLNGSGKS-------NILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYP   99 (251)
T ss_pred             eEEEECCCCCCHH-------HHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCc
Confidence            7889999999999       9999988887765 456655544 21 11  0 11234799999985         3455


Q ss_pred             CCCHHHHHHHHHHhcC-CC-CCChhHHHHHHHHHcCCC--------------------ccccCcCCCCChHHHHHHHHHH
Q psy860           97 HLTAQEMLECFSALRG-IP-GVKSGPIIDYWIDLLGLT--------------------EYRHRVSGRYSGGNKRKLSTAM  154 (178)
Q Consensus        97 ~ltv~e~l~~~~~~~~-~~-~~~~~~~~~~~l~~~~L~--------------------~~~~~~~~~LSgGqkQRv~IAr  154 (178)
                      .+||.+++........ .. +....+++.++++.+++.                    +..++++.+||+|||||++||+
T Consensus       100 ~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~  179 (251)
T cd03273         100 EITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSL  179 (251)
T ss_pred             eEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHH
Confidence            7788776654221111 11 223457888999999986                    3456889999999999999999


Q ss_pred             HHh----CCCCeEEeeCCCCCCCCCCC
Q psy860          155 ALI----GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       155 aL~----~~P~~lllDEPt~gLD~~~~  177 (178)
                      ||+    .+|+++++||||++||+.++
T Consensus       180 al~~~~~~~~~illlDEPt~~ld~~~~  206 (251)
T cd03273         180 ILALLLFKPAPMYILDEVDAALDLSHT  206 (251)
T ss_pred             HHHHhhccCCCEEEEeCCCcCCCHHHH
Confidence            998    57899999999999998653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0054|consensus

Probab=99.88  E-value=3.1e-23  Score=194.63  Aligned_cols=136  Identities=22%  Similarity=0.182  Sum_probs=114.1

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      +-.+.|+||||+|++|+    +.||+|+.|+|||       +|+..++|-.+..+|.+.++|.           ++||||
T Consensus       532 ~~~~tL~dIn~~i~~G~----lvaVvG~vGsGKS-------SLL~AiLGEm~~~sG~v~v~gs-----------iaYv~Q  589 (1381)
T KOG0054|consen  532 SPEPTLKDINFEIKKGQ----LVAVVGPVGSGKS-------SLLSAILGEMPKLSGSVAVNGS-----------VAYVPQ  589 (1381)
T ss_pred             CCcccccceeEEecCCC----EEEEECCCCCCHH-------HHHHHHhcCcccccceEEEcCe-----------EEEecc
Confidence            33459999999999999    8889999999999       9999999999999999988774           999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      .|.++ +-|++||+.|...+       ++++-+++++...|.+..+.           +--+||||||||+++|||+.++
T Consensus       590 ~pWI~-ngTvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~  661 (1381)
T KOG0054|consen  590 QPWIQ-NGTVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD  661 (1381)
T ss_pred             ccHhh-CCcHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence            99875 57999999875322       35566777776666433222           3458999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~  176 (178)
                      .|+++||-|.|++|.+.
T Consensus       662 adIYLLDDplSAVDahv  678 (1381)
T KOG0054|consen  662 ADIYLLDDPLSAVDAHV  678 (1381)
T ss_pred             CCEEEEcCcchhhhHhh
Confidence            99999999999999764

>KOG0927|consensus

Probab=99.86  E-value=3.5e-22  Score=171.32  Aligned_cols=145  Identities=16%  Similarity=0.091  Sum_probs=112.7

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhcc
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLS   83 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~   83 (178)
                      |.|++..   .+++++||-|+.++    -.|++||||+||+       |+++.+.+...|+.|.+.-.-.+         
T Consensus       397 F~y~~~~---~iy~~l~fgid~~s----rvAlVGPNG~GKs-------TLlKl~~gdl~p~~G~vs~~~H~---------  453 (614)
T KOG0927|consen  397 FGYSDNP---MIYKKLNFGIDLDS----RVALVGPNGAGKS-------TLLKLITGDLQPTIGMVSRHSHN---------  453 (614)
T ss_pred             cCCCCcc---hhhhhhhcccCccc----ceeEecCCCCchh-------hhHHHHhhccccccccccccccc---------
Confidence            4454443   67888999999888    7889999999999       99999999999999998544332         


Q ss_pred             ceEEecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860           84 GIGYCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        84 ~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      .+++.-|+.  .+.-+.++.|++.-   .  .+..+..+.+..++.++|+. +..+.++++||+|||.||..|+.++..|
T Consensus       454 ~~~~y~Qh~~e~ldl~~s~le~~~~---~--~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP  528 (614)
T KOG0927|consen  454 KLPRYNQHLAEQLDLDKSSLEFMMP---K--FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQP  528 (614)
T ss_pred             cchhhhhhhHhhcCcchhHHHHHHH---h--ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCC
Confidence            234444443  23334555555432   1  12234567788999999998 6778999999999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~  176 (178)
                      .+|+|||||+|||..+
T Consensus       529 ~lLlLDEPtnhLDi~t  544 (614)
T KOG0927|consen  529 HLLLLDEPTNHLDIET  544 (614)
T ss_pred             cEEEecCCCcCCCchh
Confidence            9999999999999864

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.86  E-value=2e-22  Score=171.43  Aligned_cols=153  Identities=16%  Similarity=0.117  Sum_probs=128.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc-c--cHHh-hccceEEe
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI-M--HLFQ-YLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~-~--~~~~-~~~~ig~v   88 (178)
                      .+.+++|||+|++||    +.+|.|..|-|.+       .|+-.+.|+.++.+|.|.++|+++ .  ...+ .+.+++||
T Consensus       271 ~~~v~~vs~~Vr~GE----IvGIAGV~GNGQ~-------eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~V  339 (501)
T COG3845         271 VTAVKDVSFEVRAGE----IVGIAGVAGNGQS-------ELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYV  339 (501)
T ss_pred             CceeeeeeeEEecCc----EEEEEecCCCCHH-------HHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccC
Confidence            367999999999999    5668889999999       788889999988889999999997 2  2333 45789999


Q ss_pred             cCCC---CCCCCCCHHHHHHHHHHh-------cCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHh
Q psy860           89 PQFN---GINEHLTAQEMLECFSAL-------RGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        89 ~Q~~---~l~~~ltv~e~l~~~~~~-------~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      |++.   .+.+.+|+.||+.+....       +.+...+..+.+.++++.|++. ...+.++.+|||||+||+.+||-|.
T Consensus       340 PedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~  419 (501)
T COG3845         340 PEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELA  419 (501)
T ss_pred             ChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhc
Confidence            9985   688999999999874332       1234456667788999999997 6667889999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~  176 (178)
                      .+|++|+..+||-|||.-+
T Consensus       420 ~~p~lLI~~qPTrGLDvgA  438 (501)
T COG3845         420 RRPDLLIAAQPTRGLDVGA  438 (501)
T ss_pred             cCCCEEEEcCCCccccHHH
Confidence            9999999999999999754

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.83  E-value=3.3e-21  Score=169.01  Aligned_cols=139  Identities=19%  Similarity=0.155  Sum_probs=112.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      ++-+++.||+|+.||    -.-|.|+||||||       +|++.+.|+-|--+|.+..-         .-..+-|+||.|
T Consensus       406 ~~ll~~l~~~v~~G~----~llI~G~SG~GKT-------sLlRaiaGLWP~g~G~I~~P---------~~~~~lflpQ~P  465 (604)
T COG4178         406 QTLLSELNFEVRPGE----RLLITGESGAGKT-------SLLRALAGLWPWGSGRISMP---------ADSALLFLPQRP  465 (604)
T ss_pred             CeeeccceeeeCCCC----EEEEECCCCCCHH-------HHHHHHhccCccCCCceecC---------CCCceEEecCCC
Confidence            478999999999999    6669999999999       99999999988777776322         112589999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCc------CCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRV------SGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      .+... |.+|.++++....    .-..+.+.++|.++||.+..++.      -..||+||||||++||.|.++|++++||
T Consensus       466 Y~p~G-tLre~l~YP~~~~----~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LD  540 (604)
T COG4178         466 YLPQG-TLREALCYPNAAP----DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLD  540 (604)
T ss_pred             CCCCc-cHHHHHhCCCCCC----CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEe
Confidence            87666 9999988653221    12345688899999997654432      2469999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          167 LPFSSQNLYN  176 (178)
Q Consensus       167 EPt~gLD~~~  176 (178)
                      |.||+||+.+
T Consensus       541 EATsALDe~~  550 (604)
T COG4178         541 EATSALDEET  550 (604)
T ss_pred             cchhccChHH
Confidence            9999999875

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.82  E-value=2e-21  Score=151.80  Aligned_cols=126  Identities=13%  Similarity=0.036  Sum_probs=88.3

Q ss_pred             hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhh----hccCCcccccccccccccccHHhhccceEEecCCC---
Q psy860           20 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSA----IRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN---   92 (178)
Q Consensus        20 ~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~----~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~---   92 (178)
                      ++++.+|     +.+|.|+||+|||       ||+..+    .|..+|+.+.+..+...+. ....+..++++||++   
T Consensus        17 ~l~~~~g-----~~~i~G~NGsGKT-------TLl~ai~~~l~G~~~~~~~~~~~~~~~i~-~~~~~~~v~~~f~~~~~~   83 (204)
T cd03240          17 EIEFFSP-----LTLIVGQNGAGKT-------TIIEALKYALTGELPPNSKGGAHDPKLIR-EGEVRAQVKLAFENANGK   83 (204)
T ss_pred             EEecCCC-----eEEEECCCCCCHH-------HHHHHHHHHHcCCCCcccccccchHHHHh-CCCCcEEEEEEEEeCCCC
Confidence            3445555     6779999999999       888776    4777777765541111111 123345799999987   


Q ss_pred             --CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHH------HHHHHHHhCCCCeEE
Q psy860           93 --GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK------LSTAMALIGDRDDGF  164 (178)
Q Consensus        93 --~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR------v~IAraL~~~P~~ll  164 (178)
                        .+...+|+.+++.+.      +    .+.+++.+         ++.+.+||+||+||      ++||+|++.+|++++
T Consensus        84 ~~~v~r~~~~~~~~~~~------~----~~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~ill  144 (204)
T cd03240          84 KYTITRSLAILENVIFC------H----QGESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILA  144 (204)
T ss_pred             EEEEEEEhhHhhceeee------c----hHHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence              233445777776431      1    12233332         77889999999996      789999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      +||||++||+.++
T Consensus       145 lDEP~~~LD~~~~  157 (204)
T cd03240         145 LDEPTTNLDEENI  157 (204)
T ss_pred             EcCCccccCHHHH
Confidence            9999999999753

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.81  E-value=7.4e-21  Score=160.79  Aligned_cols=141  Identities=14%  Similarity=0.167  Sum_probs=109.4

Q ss_pred             ccccchhhhccHHHHHH-HhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           14 PQFNGINEHLTAQEMLE-CFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~-~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      ..+.+..++++.|++.. -...++|+||.|||       |+.+.+.|..+|++|.    ..+   +     +++|-||.-
T Consensus       350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKT-------TFvk~LAG~ikPdeg~----~~~---~-----~vSyKPQyI  410 (591)
T COG1245         350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKT-------TFVKLLAGVIKPDEGS----EED---L-----KVSYKPQYI  410 (591)
T ss_pred             eecCceEEEecCCeeecceEEEEECCCCcchH-------HHHHHHhccccCCCCC----Ccc---c-----eEeecceee
Confidence            56667777666555211 04668999999999       9999999999999987    111   1     699999986


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .-..+.||.+.+.-..... ...   .-.-.++++-++|.+..++++.+||||+.|||+||.||..+.|+.+||||++.|
T Consensus       411 ~~~~~gtV~~~l~~~~~~~-~~~---s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L  486 (591)
T COG1245         411 SPDYDGTVEDLLRSAIRSA-FGS---SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL  486 (591)
T ss_pred             cCCCCCcHHHHHHHhhhhh-ccc---chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence            6667889998876533221 111   112445677889999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |...|
T Consensus       487 DvEqR  491 (591)
T COG1245         487 DVEQR  491 (591)
T ss_pred             cHHHH
Confidence            98643

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.81  E-value=1.2e-20  Score=146.67  Aligned_cols=132  Identities=11%  Similarity=0.022  Sum_probs=88.4

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEecCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCPQF   91 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~Q~   91 (178)
                      -++++++++..|     +.+|+|+||+|||       |++..+.....++... ...+......   ......|.+.+|+
T Consensus        11 ~~~~~~l~f~~g-----l~~i~G~NGsGKS-------tll~ai~~~l~~~~~~-~~r~~~~~~~i~~~~~~~~i~~~~~~   77 (198)
T cd03276          11 CHRHLQIEFGPR-----VNFIVGNNGSGKS-------AILTALTIGLGGKASD-TNRGSSLKDLIKDGESSAKITVTLKN   77 (198)
T ss_pred             ceeeeEEecCCC-----eEEEECCCCCcHH-------HHHHHHHHHhcCCccc-ccccccHHHHhhCCCCeEEEEEEEEc
Confidence            346677777776     5679999999999       6666554333222110 0111111111   1112358888888


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH----hCCCCeEEeeC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL----IGDRDDGFQKL  167 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL----~~~P~~lllDE  167 (178)
                      ..++++               .......+.++++++.   .+..++++.+||+|||||++||+|+    +.+|++++|||
T Consensus        78 ~~~~~~---------------~~~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE  139 (198)
T cd03276          78 QGLDAN---------------PLCVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE  139 (198)
T ss_pred             CCccCC---------------cCCHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence            776551               0111123557777776   6677899999999999999999999    59999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       140 P~~glD~~~~  149 (198)
T cd03276         140 FDVFMDMVNR  149 (198)
T ss_pred             cccccCHHHH
Confidence            9999998653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.80  E-value=8.8e-21  Score=148.85  Aligned_cols=137  Identities=12%  Similarity=0.071  Sum_probs=87.8

Q ss_pred             cchhhhcc-HHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-CCccccccccc-ccccccHHhhccceEEecCCCC
Q psy860           17 NGINEHLT-AQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-SPFQAAQNSLL-MTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        17 ~~v~~~~~-~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~~~~~g~i~~~-g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      ++|+|... .|+    +.+|+|+||+|||       |+++.+... ..+..+..... ....-...+.+..|+++||.+.
T Consensus        18 ~~i~~~~~~~~~----~~~i~G~NGsGKS-------Tll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~   86 (213)
T cd03279          18 QVIDFTGLDNNG----LFLICGPTGAGKS-------TILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGG   86 (213)
T ss_pred             eEEeCCCCCccC----EEEEECCCCCCHH-------HHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECC
Confidence            66777654 477    8889999999999       888888743 23333333221 0111111233456999998763


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHH-HHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC----------CCCe
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIID-YWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG----------DRDD  162 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~----------~P~~  162 (178)
                      ...  ++...       .+.+.   .+..+ ..++..++.+..++++.+||+|||||++|||||+.          +|++
T Consensus        87 ~~~--~~~r~-------~gl~~---~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~  154 (213)
T cd03279          87 KKY--RVERS-------RGLDY---DQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEA  154 (213)
T ss_pred             eEE--EEEEe-------cCCCH---HHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCE
Confidence            211  11111       02211   11111 12344456677789999999999999999999985          6789


Q ss_pred             EEeeCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYN  176 (178)
Q Consensus       163 lllDEPt~gLD~~~  176 (178)
                      ++|||||++||+.+
T Consensus       155 lllDEp~~~lD~~~  168 (213)
T cd03279         155 LFIDEGFGTLDPEA  168 (213)
T ss_pred             EEEeCCcccCCHHH
Confidence            99999999999865

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.78  E-value=2e-19  Score=165.89  Aligned_cols=74  Identities=19%  Similarity=0.123  Sum_probs=61.7

Q ss_pred             CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCC---CeEEeeCCCCCCC
Q psy860           98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDR---DDGFQKLPFSSQN  173 (178)
Q Consensus        98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P---~~lllDEPt~gLD  173 (178)
                      +|+.|++.++.....      .....+.++.+||.. ..++++.+|||||+||+.||++|+.+|   +++||||||+|||
T Consensus       792 ltv~E~l~~f~~~~~------i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD  865 (943)
T PRK00349        792 MTVEEALEFFEAIPK------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH  865 (943)
T ss_pred             CcHHHHHHHHHhchh------hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCC
Confidence            678888887654332      123467899999975 578999999999999999999999999   9999999999999


Q ss_pred             CCCC
Q psy860          174 LYNT  177 (178)
Q Consensus       174 ~~~~  177 (178)
                      +..+
T Consensus       866 ~~~~  869 (943)
T PRK00349        866 FEDI  869 (943)
T ss_pred             HHHH
Confidence            8753

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.78  E-value=1.9e-20  Score=145.34  Aligned_cols=160  Identities=10%  Similarity=0.038  Sum_probs=113.1

Q ss_pred             hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc----cccccccccccccc--HH
Q psy860            6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF----QAAQNSLLMTNIMH--LF   79 (178)
Q Consensus         6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~----~~g~i~~~g~~~~~--~~   79 (178)
                      +.+.-|...++++||+++.+||    +.+++|.+|+|||       -+.+.+.+..+-    ++-...++..+.-+  ++
T Consensus        13 ~~TsqG~vK~VD~v~ltlnEGE----i~GLVGESGSGKS-------LiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr   81 (330)
T COG4170          13 FKTSQGWVKAVDRVSMTLNEGE----IRGLVGESGSGKS-------LIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             EecCCCceEeeeeeeeeeccce----eeeeeccCCCchh-------HHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence            3456677899999999999999    5559999999999       555666666442    22233344333322  22


Q ss_pred             hh----ccceEEecCCCC--CCCCCCHHH-HHHHH------HHhcCCCCCChhHHHHHHHHHcCCCc---cccCcCCCCC
Q psy860           80 QY----LSGIGYCPQFNG--INEHLTAQE-MLECF------SALRGIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYS  143 (178)
Q Consensus        80 ~~----~~~ig~v~Q~~~--l~~~ltv~e-~l~~~------~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LS  143 (178)
                      +.    .+.|+++||+|.  +.|..++-. .+.-.      .+++ ....+.++++-++|.++|+.+   .+..++.+|.
T Consensus        82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWW-q~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT  160 (330)
T COG4170          82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWW-QRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT  160 (330)
T ss_pred             HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHh-hhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence            22    245889999985  455444422 22211      1111 111244667889999999974   5568999999


Q ss_pred             hHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          144 GGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       144 gGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      -|+-|||+||.|++.+|++||.||||+.+||.++
T Consensus       161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq  194 (330)
T COG4170         161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQ  194 (330)
T ss_pred             cCcceeeeeehhhccCCceEeccCCCcccCccHH
Confidence            9999999999999999999999999999999763

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.77  E-value=2.9e-19  Score=171.69  Aligned_cols=83  Identities=17%  Similarity=0.049  Sum_probs=65.5

Q ss_pred             CCCCCCHHHHHHHHHHh---cCCCCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHh---CCCCeEEee
Q psy860           94 INEHLTAQEMLECFSAL---RGIPGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALI---GDRDDGFQK  166 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~---~~P~~lllD  166 (178)
                      .+...||.|++.+...-   .+....+..+++ ++++.+++.+. .++.+.+|||||||||.||+||+   .+|+++|||
T Consensus       759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD  837 (1809)
T PRK00635        759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD  837 (1809)
T ss_pred             ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence            35567899988874331   222233445556 58899999876 79999999999999999999997   699999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       838 EPTsGLD~~~~  848 (1809)
T PRK00635        838 EPTTGLHTHDI  848 (1809)
T ss_pred             CCCCCCCHHHH
Confidence            99999998753

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.77  E-value=1.6e-20  Score=141.89  Aligned_cols=144  Identities=14%  Similarity=0.148  Sum_probs=118.1

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEecCCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCPQFN   92 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~Q~~   92 (178)
                      -|--.|.++.+||    ...++||||+|||       ||+..+.|+++ -+|.|.++|.+....  .++.++-+|+.|+.
T Consensus        14 RL~plS~qv~aGe----~~HliGPNGaGKS-------TLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq   81 (248)
T COG4138          14 RLGPLSGEVRAGE----ILHLVGPNGAGKS-------TLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQ   81 (248)
T ss_pred             cccccccccccce----EEEEECCCCccHH-------HHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhcc
Confidence            4556788999999    6669999999999       99999999885 569999999988653  56777789999987


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC-----CC--CeEEe
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG-----DR--DDGFQ  165 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~-----~P--~~lll  165 (178)
                      ...+.+.|+..+...     .+.++....++++...+++.+...+.+++||||+=|||-+|....+     ||  ++|++
T Consensus        82 ~p~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll  156 (248)
T COG4138          82 TPPFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL  156 (248)
T ss_pred             CCcchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence            766778888777542     2334445567888889999999999999999999999999986654     33  79999


Q ss_pred             eCCCCCCCCC
Q psy860          166 KLPFSSQNLY  175 (178)
Q Consensus       166 DEPt~gLD~~  175 (178)
                      |||.++||+.
T Consensus       157 DEP~~~LDvA  166 (248)
T COG4138         157 DEPMNSLDVA  166 (248)
T ss_pred             cCCCcchhHH
Confidence            9999999975

>KOG0066|consensus

Probab=99.76  E-value=5.5e-19  Score=149.39  Aligned_cols=137  Identities=20%  Similarity=0.179  Sum_probs=108.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .+.+..++|-|.--.    -.||+||||+|||       |+++.++|-+.|+.|+..-+         .|-+||+.-|..
T Consensus       600 kpLFkkldFGiDmdS----RiaIVGPNGVGKS-------TlLkLL~Gkl~P~~GE~RKn---------hrL~iG~FdQh~  659 (807)
T KOG0066|consen  600 KPLFKKLDFGIDMDS----RIAIVGPNGVGKS-------TLLKLLIGKLDPNDGELRKN---------HRLRIGWFDQHA  659 (807)
T ss_pred             Cchhhcccccccccc----eeEEECCCCccHH-------HHHHHHhcCCCCCcchhhcc---------ceeeeechhhhh
Confidence            477888888887666    5789999999999       99999999999999986222         233699988875


Q ss_pred             --CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-CcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           93 --GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-RVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        93 --~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                        .+...-|..|.+.   +.+.++    .+.+...|-.+||...++ -.+..||||||-||++|-.-+..|++|||||||
T Consensus       660 ~E~L~~Eetp~EyLq---r~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPT  732 (807)
T KOG0066|consen  660 NEALNGEETPVEYLQ---RKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPT  732 (807)
T ss_pred             HHhhccccCHHHHHH---HhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence              3445556555543   233443    566888899999975554 468899999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          170 SSQNLYN  176 (178)
Q Consensus       170 ~gLD~~~  176 (178)
                      +.||+.+
T Consensus       733 NNLDIES  739 (807)
T KOG0066|consen  733 NNLDIES  739 (807)
T ss_pred             CCcchhh
Confidence            9999875

>KOG0062|consensus

Probab=99.76  E-value=4e-19  Score=151.92  Aligned_cols=149  Identities=19%  Similarity=0.140  Sum_probs=99.2

Q ss_pred             hhhhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhh
Q psy860            2 HLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQY   81 (178)
Q Consensus         2 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~   81 (178)
                      |...++-.+|..-.|++-++++..|.    -..+.|+||+|||       ||++.+..      |.+.....+.    +.
T Consensus        82 ~~~~fdLa~G~k~LL~~a~L~L~~Gr----RYGLvGrNG~GKs-------TLLRaia~------~~v~~f~veq----E~  140 (582)
T KOG0062|consen   82 HIDNFDLAYGGKILLNKANLTLSRGR----RYGLVGRNGIGKS-------TLLRAIAN------GQVSGFHVEQ----EV  140 (582)
T ss_pred             eeeeeeeeecchhhhcCCceeeeccc----ccceeCCCCCcHH-------HHHHHHHh------cCcCccCchh----he
Confidence            45556667788889999999999998    5569999999999       99998875      4442222210    00


Q ss_pred             ccceEEecCC-CCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           82 LSGIGYCPQF-NGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        82 ~~~ig~v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      +  --+++-. ..+..+..+.+.+.-   -..+... ...+...++|..+|.. +-..++..+||||.|.|+++||||..
T Consensus       141 ~--g~~t~~~~~~l~~D~~~~dfl~~---e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~  215 (582)
T KOG0062|consen  141 R--GDDTEALQSVLESDTERLDFLAE---EKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFA  215 (582)
T ss_pred             e--ccchHHHhhhhhccHHHHHHHHh---hhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhc
Confidence            0  0011100 012222223222221   1111111 2233344488999997 56678889999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~  176 (178)
                      +||+|+|||||+.||+.+
T Consensus       216 ~pDlLLLDEPTNhLDv~a  233 (582)
T KOG0062|consen  216 KPDLLLLDEPTNHLDVVA  233 (582)
T ss_pred             CCCEEeecCCcccchhHH
Confidence            999999999999999865

>KOG0927|consensus

Probab=99.76  E-value=1.1e-19  Score=156.04  Aligned_cols=153  Identities=16%  Similarity=0.096  Sum_probs=96.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc--ccccccccc-HHh-h-------
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN--SLLMTNIMH-LFQ-Y-------   81 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i--~~~g~~~~~-~~~-~-------   81 (178)
                      .+.++|+.|++..|+    -++|+|+||+||+       |+++++.+-..|..-.+  +..-+++.. ..+ +       
T Consensus        88 ~~l~kd~~~El~~g~----rygLiG~nG~Gks-------t~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~  156 (614)
T KOG0927|consen   88 VELIKDVTLELNRGR----RYGLIGPNGSGKS-------TFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMET  156 (614)
T ss_pred             ceeeeeeeEEecCCc----eEEEEcCCCCcHh-------HHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhh
Confidence            478999999999999    5669999999999       99999888766643332  222222211 000 0       


Q ss_pred             ---ccceEEecCCCCCC-CCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCC-CccccCcCCCCChHHHHHHHHHHHH
Q psy860           82 ---LSGIGYCPQFNGIN-EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGL-TEYRHRVSGRYSGGNKRKLSTAMAL  156 (178)
Q Consensus        82 ---~~~ig~v~Q~~~l~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~IAraL  156 (178)
                         +.++.|.-++.... +...-.+....+.+...+.......++..+|..++- .+..++.+.+||||+|.|+++||||
T Consensus       157 ~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~L  236 (614)
T KOG0927|consen  157 DHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARAL  236 (614)
T ss_pred             HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHH
Confidence               01111111110000 110000001111122222333444556666766665 4788999999999999999999999


Q ss_pred             hCCCCeEEeeCCCCCCCCCC
Q psy860          157 IGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       157 ~~~P~~lllDEPt~gLD~~~  176 (178)
                      ..+|++|+|||||++||+.+
T Consensus       237 f~kP~LLLLDEPtnhLDleA  256 (614)
T KOG0927|consen  237 FQKPDLLLLDEPTNHLDLEA  256 (614)
T ss_pred             hcCCCEEEecCCccCCCHHH
Confidence            99999999999999999865

>KOG0062|consensus

Probab=99.74  E-value=1.6e-18  Score=148.20  Aligned_cols=139  Identities=13%  Similarity=-0.018  Sum_probs=109.1

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      ..+.++++.++.-+    -.++.|+||.||+       |+++.+.+-..|..|.+.+.+         |.+|+|.+|+..
T Consensus       378 ~~~~~~~~d~e~~s----Ri~~vg~ng~gks-------t~lKi~~~~l~~~rgi~~~~~---------r~ri~~f~Qhhv  437 (582)
T KOG0062|consen  378 QWRKQLGLDRESDS----RISRVGENGDGKS-------TLLKILKGDLTPTRGIVGRHP---------RLRIKYFAQHHV  437 (582)
T ss_pred             hhhhccCCccchhh----hhheeccCchhHH-------HHHHHHhccCCcccceeeecc---------cceecchhHhhh
Confidence            67788888877666    4669999999999       999999987788888775443         347999999864


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      =+.+++|-+.-.+.....|.    .++.+++.+..+||+ +.+.+.+..||||||-||++|....++|.+|+|||||+.|
T Consensus       438 d~l~~~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhL  513 (582)
T KOG0062|consen  438 DFLDKNVNAVDFMEKSFPGK----TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHL  513 (582)
T ss_pred             hHHHHHhHHHHHHHHhCCCC----CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccc
Confidence            33444444333322223332    466788899999997 7888889999999999999999999999999999999999


Q ss_pred             CCCC
Q psy860          173 NLYN  176 (178)
Q Consensus       173 D~~~  176 (178)
                      |..+
T Consensus       514 D~ds  517 (582)
T KOG0062|consen  514 DRDS  517 (582)
T ss_pred             cHHH
Confidence            9754

>KOG0060|consensus

Probab=99.71  E-value=3.9e-18  Score=147.56  Aligned_cols=144  Identities=13%  Similarity=-0.010  Sum_probs=110.0

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      ...+|.||+|+.|+++-    |.|+||||||       .|++.+.|+-+-..|.+.-..+.-      -+.+-|+||.|.
T Consensus       449 ~lie~Ls~~V~~g~~LL----ItG~sG~GKt-------SLlRvlggLWp~~~G~l~k~~~~~------~~~lfflPQrPY  511 (659)
T KOG0060|consen  449 LLIENLSLEVPSGQNLL----ITGPSGCGKT-------SLLRVLGGLWPSTGGKLTKPTDGG------PKDLFFLPQRPY  511 (659)
T ss_pred             eeeeeeeeEecCCCeEE----EECCCCCchh-------HHHHHHhcccccCCCeEEecccCC------CCceEEecCCCC
Confidence            57888999999999766    9999999999       888999898877777763222110      035899999987


Q ss_pred             CCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCCccccCc-----------CCCCChHHHHHHHHHHHHhCCCC
Q psy860           94 INEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLTEYRHRV-----------SGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +... |.+|.+.++... ....+....+++.+.|+.++|.+..++-           ...||+|||||++.||-+.++|+
T Consensus       512 mt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk  590 (659)
T KOG0060|consen  512 MTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPK  590 (659)
T ss_pred             cccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCc
Confidence            6555 889988776322 2222333456788888888776543322           34799999999999999999999


Q ss_pred             eEEeeCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLY  175 (178)
Q Consensus       162 ~lllDEPt~gLD~~  175 (178)
                      +-||||-||++|..
T Consensus       591 ~AiLDE~TSAv~~d  604 (659)
T KOG0060|consen  591 FAILDECTSAVTED  604 (659)
T ss_pred             eEEeechhhhccHH
Confidence            99999999999864

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.70  E-value=9.3e-18  Score=154.75  Aligned_cols=74  Identities=20%  Similarity=0.172  Sum_probs=60.0

Q ss_pred             CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhC---CCCeEEeeCCCCCCC
Q psy860           98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIG---DRDDGFQKLPFSSQN  173 (178)
Q Consensus        98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~---~P~~lllDEPt~gLD  173 (178)
                      +|+.|.+.|+.....+      ....++++.+||.. ..++++.+|||||+|||.||++|+.   +|++++|||||+|||
T Consensus       790 ~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD  863 (924)
T TIGR00630       790 MTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH  863 (924)
T ss_pred             CcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCC
Confidence            6677777776543221      23567889999975 4789999999999999999999997   599999999999999


Q ss_pred             CCCC
Q psy860          174 LYNT  177 (178)
Q Consensus       174 ~~~~  177 (178)
                      +..+
T Consensus       864 ~~~~  867 (924)
T TIGR00630       864 FDDI  867 (924)
T ss_pred             HHHH
Confidence            8753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.69  E-value=3e-18  Score=137.36  Aligned_cols=135  Identities=13%  Similarity=-0.002  Sum_probs=80.8

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc--cccH-------HhhccceEEecCCCC-CCCCCCHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN--IMHL-------FQYLSGIGYCPQFNG-INEHLTAQ  101 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~--~~~~-------~~~~~~ig~v~Q~~~-l~~~ltv~  101 (178)
                      +.+|+|+||+|||       ||+..+.++..++.+.+...+..  +..-       .+..-.+.|..|++. .....++.
T Consensus        24 ~~~i~G~NGsGKS-------tll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~   96 (247)
T cd03275          24 FTCIIGPNGSGKS-------NLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT   96 (247)
T ss_pred             eEEEECCCCCCHH-------HHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence            7889999999999       88888887776665655332211  1000       011112334334321 11111111


Q ss_pred             HHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc----------------------cccCcCCCCChHHHHHHHHHHHHhCC
Q psy860          102 EMLECFSALRGIPGVKSGPIIDYWIDLLGLTE----------------------YRHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus       102 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------------------~~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      +....+ .+.+  .....+.++++++.+++..                      ..++++.+||+|||||++||+|++.+
T Consensus        97 ~~~~~~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~  173 (247)
T cd03275          97 GGSSSY-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH  173 (247)
T ss_pred             CCceEE-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence            110000 0111  1122445677888888742                      12344589999999999999999875


Q ss_pred             ----CCeEEeeCCCCCCCCCC
Q psy860          160 ----RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       160 ----P~~lllDEPt~gLD~~~  176 (178)
                          |++++|||||+|||+.+
T Consensus       174 ~~~~p~~lllDEPt~~LD~~~  194 (247)
T cd03275         174 SYQPAPFFVLDEVDAALDNTN  194 (247)
T ss_pred             ccCCCCEEEEecccccCCHHH
Confidence                99999999999999864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0065|consensus

Probab=99.68  E-value=5.1e-18  Score=157.69  Aligned_cols=151  Identities=19%  Similarity=0.243  Sum_probs=125.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc---ccccccccccccccHHhhccceEEecC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF---QAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~---~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      ++++|+|.-++.||+    .-+.|+.|+||+       |+++.+.|-+..   ..|.+.++|.+.+.... ++.++|++|
T Consensus       129 ~il~~~sg~~~pg~m----~lvLG~pgsG~t-------tllkal~g~~~~~~~~~~~isy~G~~~~e~~~-~~~~aY~~e  196 (1391)
T KOG0065|consen  129 QILKDISGIIKPGEM----TLVLGPPGSGKT-------TLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-KKTVAYNSE  196 (1391)
T ss_pred             eeecCcceeEcCCce----EEEecCCCCchH-------HHHHHHhCCCcccccCCCceeECCCccccccc-CceEEeccc
Confidence            689999999999994    459999999999       999998887332   34588999998877655 678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCC----CCCChhH----HHHHHHHHcCCCccccCcCC-----CCChHHHHHHHHHHHHh
Q psy860           91 FNGINEHLTAQEMLECFSALRGI----PGVKSGP----IIDYWIDLLGLTEYRHRVSG-----RYSGGNKRKLSTAMALI  157 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~----~~~~~~~----~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~IAraL~  157 (178)
                      ++.-++.+||+|.+.|.++.++.    +.-..++    ..+.+++.+||++.+|..++     -.|||||+||.+|-+++
T Consensus       197 ~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v  276 (1391)
T KOG0065|consen  197 QDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV  276 (1391)
T ss_pred             cccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence            99889999999999998876543    1111122    35678999999988887765     58999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~  176 (178)
                      .+|++++.||+|.|||..+
T Consensus       277 ~~~~~~~~De~t~GLDSsT  295 (1391)
T KOG0065|consen  277 GPASILFWDEITRGLDSST  295 (1391)
T ss_pred             cCcceeeeecccccccHHH
Confidence            9999999999999999764

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.68  E-value=6.9e-18  Score=140.97  Aligned_cols=139  Identities=20%  Similarity=0.137  Sum_probs=112.6

Q ss_pred             ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--cHHhhccceEEecCCCC
Q psy860           16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--HLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~~~~~~~~ig~v~Q~~~   93 (178)
                      +.-||++|..||    ++=|+|-||||||       |+++.+.|+.+|++|+|.+||+++.  ++.++|+-++-||.+..
T Consensus       339 vgPiNl~ikrGe----lvFliG~NGsGKS-------T~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyh  407 (546)
T COG4615         339 VGPINLTIKRGE----LVFLIGGNGSGKS-------TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYH  407 (546)
T ss_pred             ecceeeEEecCc----EEEEECCCCCcHH-------HHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHh
Confidence            556899999999    5669999999999       9999999999999999999999885  36778877777777766


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc---cccCcC--CCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE---YRHRVS--GRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~--~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      +|+.+            .+.......+.++.+|+++.+.+   ..|...  -.||.|||+|+++--|++-+.++++|||=
T Consensus       408 LF~~l------------l~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW  475 (546)
T COG4615         408 LFDQL------------LGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW  475 (546)
T ss_pred             hhHhh------------hCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh
Confidence            65532            22223344567888888887753   344443  46999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      .+-.||.-|
T Consensus       476 AADQDPaFR  484 (546)
T COG4615         476 AADQDPAFR  484 (546)
T ss_pred             hccCChHHH
Confidence            999999754

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.67  E-value=1e-17  Score=141.93  Aligned_cols=135  Identities=19%  Similarity=0.160  Sum_probs=93.8

Q ss_pred             ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc-----------cccccccccH-Hhhcc---ceEE
Q psy860           23 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN-----------SLLMTNIMHL-FQYLS---GIGY   87 (178)
Q Consensus        23 ~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i-----------~~~g~~~~~~-~~~~~---~ig~   87 (178)
                      .+.|+    ..+|+|+||.|||       |.++.+.|-+.|.-|.-           .+-|....+. .++..   ++..
T Consensus        97 pr~G~----V~GilG~NGiGKs-------TalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~  165 (591)
T COG1245          97 PRPGK----VVGILGPNGIGKS-------TALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVH  165 (591)
T ss_pred             CCCCc----EEEEEcCCCccHH-------HHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceec
Confidence            45677    4559999999999       99999999988876663           1122222211 11211   1333


Q ss_pred             ecCCCCCCC---CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           88 CPQFNGINE---HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        88 v~Q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      -||.-...|   .=+|.|.+.-         ...+-..+++.+.++|.+..++.+++||||+.|||+||.|++.+.|+.+
T Consensus       166 K~QYVd~iPk~~KG~v~elLk~---------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~  236 (591)
T COG1245         166 KPQYVDLIPKVVKGKVGELLKK---------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYF  236 (591)
T ss_pred             chHHHHHHHHHhcchHHHHHHh---------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEE
Confidence            344322222   1144444321         1122357888999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      +|||||.||+..|
T Consensus       237 FDEpsSyLDi~qR  249 (591)
T COG1245         237 FDEPSSYLDIRQR  249 (591)
T ss_pred             EcCCcccccHHHH
Confidence            9999999998643

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.56  E-value=2.9e-16  Score=122.06  Aligned_cols=109  Identities=9%  Similarity=-0.059  Sum_probs=70.7

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh-ccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI-RFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~-~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      .+-++||++..|+.   ..+|.|+||+|||       |+++.+. ....++.|.                   ++|-...
T Consensus        16 ~~~~~~~~i~~~~~---~~~ltG~Ng~GKS-------tll~~i~~~~~~~~~G~-------------------~vp~~~~   66 (200)
T cd03280          16 KVVPLDIQLGENKR---VLVITGPNAGGKT-------VTLKTLGLLTLMAQSGL-------------------PIPAAEG   66 (200)
T ss_pred             ceEcceEEECCCce---EEEEECCCCCChH-------HHHHHHHHHHHHHHcCC-------------------Ccccccc
Confidence            45588999999841   5779999999999       8888765 111111110                   2221100


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN  173 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD  173 (178)
                                ...    .         ..++.+..++..+..+...+++|+||+|++.|++++ .+|+++++||||+|+|
T Consensus        67 ----------~~~----~---------~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD  122 (200)
T cd03280          67 ----------SSL----P---------VFENIFADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTD  122 (200)
T ss_pred             ----------ccC----c---------CccEEEEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCC
Confidence                      000    0         000111223344445667789999999999999885 8999999999999999


Q ss_pred             CCC
Q psy860          174 LYN  176 (178)
Q Consensus       174 ~~~  176 (178)
                      +..
T Consensus       123 ~~~  125 (200)
T cd03280         123 PVE  125 (200)
T ss_pred             HHH
Confidence            865

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.52  E-value=2.3e-15  Score=118.38  Aligned_cols=45  Identities=11%  Similarity=-0.008  Sum_probs=38.1

Q ss_pred             ccccCcCCCCChHHHHHHHHHHHH----hCCCCeEEeeCCCCCCCCCCC
Q psy860          133 EYRHRVSGRYSGGNKRKLSTAMAL----IGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       133 ~~~~~~~~~LSgGqkQRv~IAraL----~~~P~~lllDEPt~gLD~~~~  177 (178)
                      +..+..+.+||+||||++.+|++|    +.+|+++++||||+|||+.++
T Consensus       118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~  166 (213)
T cd03277         118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNE  166 (213)
T ss_pred             CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHH
Confidence            445677899999999999877554    589999999999999999754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0064|consensus

Probab=99.51  E-value=2.3e-15  Score=129.54  Aligned_cols=137  Identities=15%  Similarity=0.112  Sum_probs=93.5

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      .++...+|.|+.|-    =.-|.||||||||       .|.+.+.|+-|--.|...+      .   ....|-|+||.|.
T Consensus       496 vvv~~Ltf~i~~G~----hLLItGPNGCGKS-------SLfRILggLWPvy~g~L~~------P---~~~~mFYIPQRPY  555 (728)
T KOG0064|consen  496 VLVPKLTFQIEPGM----HLLITGPNGCGKS-------SLFRILGGLWPVYNGLLSI------P---RPNNIFYIPQRPY  555 (728)
T ss_pred             eeecceeEEecCCc----eEEEECCCCccHH-------HHHHHHhccCcccCCeeec------C---CCcceEeccCCCc
Confidence            36778889999887    4459999999999       6667777776654444311      1   1225999999875


Q ss_pred             CCCCCCHHHHHHHHH-----HhcCCCCCChhHHHHHHHHHcCCCccccCcC---------CCCChHHHHHHHHHHHHhCC
Q psy860           94 INEHLTAQEMLECFS-----ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS---------GRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        94 l~~~ltv~e~l~~~~-----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~IAraL~~~  159 (178)
                      .- .=|.+|.+.++-     ..++..    .+....+|..+.|++.+.+-.         ..||||+|||+.+||.+.++
T Consensus       556 ms-~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHr  630 (728)
T KOG0064|consen  556 MS-GGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHR  630 (728)
T ss_pred             cC-cCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcC
Confidence            43 334555444321     112332    334556666666655444332         46999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLY  175 (178)
Q Consensus       160 P~~lllDEPt~gLD~~  175 (178)
                      |++.+|||-||++-+.
T Consensus       631 PkyalLDEcTsAvsid  646 (728)
T KOG0064|consen  631 PKYALLDECTSAVSID  646 (728)
T ss_pred             cchhhhhhhhcccccc
Confidence            9999999999987653

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.49  E-value=2e-14  Score=133.17  Aligned_cols=81  Identities=19%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             CCCCCHHHHHHHHHHhcCCCCC----------ChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCC--C
Q psy860           95 NEHLTAQEMLECFSALRGIPGV----------KSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDR--D  161 (178)
Q Consensus        95 ~~~ltv~e~l~~~~~~~~~~~~----------~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P--~  161 (178)
                      +..++|.|.+.|+..+ +.+..          +..++++ +++.+||... .++.+.+|||||||||.||+||+.+|  +
T Consensus       434 ~~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~  511 (943)
T PRK00349        434 VSELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV  511 (943)
T ss_pred             HhcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCc
Confidence            4568888888875433 22211          2223343 6788999866 79999999999999999999999997  9


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      ++||||||+||||..+
T Consensus       512 llILDEPtagLd~~~~  527 (943)
T PRK00349        512 LYVLDEPSIGLHQRDN  527 (943)
T ss_pred             EEEecCCccCCCHHHH
Confidence            9999999999999753

>KOG0066|consensus

Probab=99.48  E-value=4.4e-14  Score=119.95  Aligned_cols=152  Identities=18%  Similarity=0.101  Sum_probs=99.4

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCccccccccccccc-cc----H----Hhhc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNI-MH----L----FQYL   82 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~-~~----~----~~~~   82 (178)
                      -.+.+-|+.|-.|.    -..++||||-||+       ||++++..-  ..|....+.+.-+.+ .+    +    ..-.
T Consensus       278 ~LFvnA~L~Iv~GR----RYGLVGPNG~GKT-------TLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~  346 (807)
T KOG0066|consen  278 LLFVNASLTIVYGR----RYGLVGPNGMGKT-------TLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADK  346 (807)
T ss_pred             eeeeccceEEEecc----eecccCCCCCchH-------HHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhH
Confidence            45677888888888    4569999999999       999987643  334334443333322 11    0    0000


Q ss_pred             cceEEecCCC-----CCCCCCCHHHHHHH-HHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHH
Q psy860           83 SGIGYCPQFN-----GINEHLTAQEMLEC-FSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMA  155 (178)
Q Consensus        83 ~~ig~v~Q~~-----~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAra  155 (178)
                      ++..++-...     ..-...|+.|.+.- +..++.+....+..++.++|.-+|.+ +..+++...+|||.|.||++|||
T Consensus       347 kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARA  426 (807)
T KOG0066|consen  347 KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARA  426 (807)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHH
Confidence            1122211111     01124556554432 33333333334456788999999997 56678888999999999999999


Q ss_pred             HhCCCCeEEeeCCCCCCCCCC
Q psy860          156 LIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       156 L~~~P~~lllDEPt~gLD~~~  176 (178)
                      |..+|-+|.|||||+.||..+
T Consensus       427 LflEPTLLMLDEPTNHLDLNA  447 (807)
T KOG0066|consen  427 LFLEPTLLMLDEPTNHLDLNA  447 (807)
T ss_pred             HhcCceeeeecCCccccccce
Confidence            999999999999999999754

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.46  E-value=4.3e-14  Score=130.66  Aligned_cols=81  Identities=19%  Similarity=0.174  Sum_probs=59.8

Q ss_pred             CCCCHHHHHHHHHHhcCCCC-C--------ChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCC--CeE
Q psy860           96 EHLTAQEMLECFSALRGIPG-V--------KSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDR--DDG  163 (178)
Q Consensus        96 ~~ltv~e~l~~~~~~~~~~~-~--------~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P--~~l  163 (178)
                      -.+|+.|.+.|+..+...+. .        +..++. +.+..+||... .++.+.+|||||+|||.||+||+.+|  +++
T Consensus       433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll  511 (924)
T TIGR00630       433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY  511 (924)
T ss_pred             hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence            36788888877655321100 0        111111 24677888765 69999999999999999999999996  899


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      ||||||+|||+.++
T Consensus       512 ILDEPtagLD~~~~  525 (924)
T TIGR00630       512 VLDEPSIGLHQRDN  525 (924)
T ss_pred             EEcCCccCCCHHHH
Confidence            99999999999753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0063|consensus

Probab=99.44  E-value=7e-14  Score=118.07  Aligned_cols=149  Identities=13%  Similarity=0.112  Sum_probs=112.3

Q ss_pred             hhhhhccCccccccchhhhccHHHHHH-HhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhc
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLE-CFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYL   82 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~-~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~   82 (178)
                      |.|++-.   .-+-+..+.|..||-+. .+...+|.||.|||       |+++.++|..+|+.|.      +++.+    
T Consensus       343 y~Yp~m~---k~~g~F~L~i~~GefsdSeiivmlgEngtgkT-------Tfi~mlag~~~pd~~~------e~p~l----  402 (592)
T KOG0063|consen  343 YSYPKMK---KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKT-------TFIRMLAGRLKPDEGG------EIPVL----  402 (592)
T ss_pred             eccCcce---eeeeeEEEEEeecccCCceeEEEEccCCcchh-------HHHHHHhcCCCCCccC------ccccc----
Confidence            4554443   56777788888887211 02567899999999       9999999999988765      22222    


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                       .++|=||...--..-||++.+.--  ++.  .....+.+.++++-+.+++..|+.+..||||++|||++|.+|-...++
T Consensus       403 -nVSykpqkispK~~~tvR~ll~~k--Ir~--ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdv  477 (592)
T KOG0063|consen  403 -NVSYKPQKISPKREGTVRQLLHTK--IRD--AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADV  477 (592)
T ss_pred             -ceeccccccCccccchHHHHHHHH--hHh--hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence             588888876544556787755431  111  112345678888889999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      .+.|||.+.||...|
T Consensus       478 YliDEpsAylDSeQR  492 (592)
T KOG0063|consen  478 YLIDEPSAYLDSEQR  492 (592)
T ss_pred             EEecCchhhcChHHH
Confidence            999999999997654

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.43  E-value=5.8e-14  Score=107.54  Aligned_cols=36  Identities=17%  Similarity=0.008  Sum_probs=33.5

Q ss_pred             CChHHHHHHHHHHHHh----CCCCeEEeeCCCCCCCCCCC
Q psy860          142 YSGGNKRKLSTAMALI----GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       142 LSgGqkQRv~IAraL~----~~P~~lllDEPt~gLD~~~~  177 (178)
                      ||+|||||++|||+++    .+|+++++|||+++||+.++
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~  134 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNR  134 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHH
Confidence            9999999999999996    69999999999999998753

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG2355|consensus

Probab=99.40  E-value=1.2e-13  Score=107.07  Aligned_cols=150  Identities=18%  Similarity=0.179  Sum_probs=103.6

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---H--
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---L--   78 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~--   78 (178)
                      |.|.-.   .|++.|+|++++.|.-    .-++|.||+||+       ||++.+.|-.---.|.|.+.|.+.-.   +  
T Consensus        21 f~y~~~---dP~~~Dfnldlp~gsR----cLlVGaNGaGKt-------TlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~   86 (291)
T KOG2355|consen   21 FKYKVS---DPIFFDFNLDLPAGSR----CLLVGANGAGKT-------TLLKILSGKHMVGGGVVQVLGRSAFHDTSLES   86 (291)
T ss_pred             EecccC---CceEEEEeeccCCCce----EEEEecCCCchh-------hhHHHhcCcccccCCeEEEcCcCccccccccc
Confidence            566322   3899999999999984    448999999999       99999888754455777777775422   1  


Q ss_pred             --------HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHH
Q psy860           79 --------FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        79 --------~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv  150 (178)
                              .++.+..++-- +..+..++++.+.+.-   ..+   .. -++-+++++.+++.-  .-+.+.+|-|||+||
T Consensus        87 Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mifg---V~g---~d-p~Rre~LI~iLDIdl--~WRmHkvSDGqrRRV  156 (291)
T KOG2355|consen   87 SGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFG---VGG---DD-PERREKLIDILDIDL--RWRMHKVSDGQRRRV  156 (291)
T ss_pred             cCceeEecccccccccccc-cccccccccHHHHHhh---ccC---CC-hhHhhhhhhheeccc--eEEEeeccccchhhh
Confidence                    12222222222 1223345666554321   222   22 245566777777752  345788999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      .|++.|+.--++|+|||-|.-||+.+|
T Consensus       157 QicMGLL~PfkVLLLDEVTVDLDVlAR  183 (291)
T KOG2355|consen  157 QICMGLLKPFKVLLLDEVTVDLDVLAR  183 (291)
T ss_pred             HHHHhcccceeEEEeeeeEeehHHHHH
Confidence            999999999999999999999998765

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.40  E-value=2.3e-14  Score=111.53  Aligned_cols=109  Identities=8%  Similarity=-0.133  Sum_probs=76.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      ..+++|+++..  |+    +.+|.|+||+|||       |+++.+.+...     +...|..+..       -.+++|..
T Consensus        14 ~~v~n~i~l~~--g~----~~~ltGpNg~GKS-------Tllr~i~~~~~-----l~~~G~~v~a-------~~~~~q~~   68 (199)
T cd03283          14 KRVANDIDMEK--KN----GILITGSNMSGKS-------TFLRTIGVNVI-----LAQAGAPVCA-------SSFELPPV   68 (199)
T ss_pred             CeecceEEEcC--Cc----EEEEECCCCCChH-------HHHHHHHHHHH-----HHHcCCEEec-------CccCcccc
Confidence            35778888877  46    7789999999999       88888865321     1223443321       13667766


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      .+++.+|+.|++.+.....    ....+++.++++.+++                          .+|+++++||||+|+
T Consensus        69 ~l~~~~~~~d~l~~~~s~~----~~e~~~~~~iL~~~~~--------------------------~~p~llllDEp~~gl  118 (199)
T cd03283          69 KIFTSIRVSDDLRDGISYF----YAELRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGT  118 (199)
T ss_pred             eEEEeccchhccccccChH----HHHHHHHHHHHHhccC--------------------------CCCeEEEEecccCCC
Confidence            7899999999986532111    1122456777777762                          799999999999999


Q ss_pred             CCCC
Q psy860          173 NLYN  176 (178)
Q Consensus       173 D~~~  176 (178)
                      |+..
T Consensus       119 D~~~  122 (199)
T cd03283         119 NSRE  122 (199)
T ss_pred             CHHH
Confidence            9875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.39  E-value=2.9e-14  Score=112.80  Aligned_cols=107  Identities=15%  Similarity=0.044  Sum_probs=77.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE-EecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG-YCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig-~v~Q~   91 (178)
                      ..+.+|+++++..++    +..|.|+|++|||       |+++.+.-        +.+           ..++| |||.+
T Consensus        17 ~~v~~~~~~~~~~~~----~~~l~G~n~~GKs-------tll~~i~~--------~~~-----------la~~g~~vpa~   66 (222)
T cd03285          17 AFIPNDVTLTRGKSR----FLIITGPNMGGKS-------TYIRQIGV--------IVL-----------MAQIGCFVPCD   66 (222)
T ss_pred             CeEEeeEEEeecCCe----EEEEECCCCCChH-------HHHHHHHH--------HHH-----------HHHhCCCcCcc
Confidence            357999999999888    7789999999999       77776541        100           11234 55554


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH--hCCCCeEEeeCC-
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL--IGDRDDGFQKLP-  168 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL--~~~P~~lllDEP-  168 (178)
                      ....+                        .+++++..+++.+..   ...+|.|++|++.+++++  +.+|+++|+||| 
T Consensus        67 ~~~~~------------------------~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~  119 (222)
T cd03285          67 SADIP------------------------IVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELG  119 (222)
T ss_pred             cEEEe------------------------ccceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence            32111                        123344556665432   577999999999999999  899999999999 


Q ss_pred             --CCCCCCCC
Q psy860          169 --FSSQNLYN  176 (178)
Q Consensus       169 --t~gLD~~~  176 (178)
                        |+++|+.+
T Consensus       120 ~gT~~lD~~~  129 (222)
T cd03285         120 RGTSTYDGFG  129 (222)
T ss_pred             CCCChHHHHH
Confidence              99999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.39  E-value=2e-13  Score=115.09  Aligned_cols=135  Identities=13%  Similarity=0.046  Sum_probs=99.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--------CCcccccccccccccccHHhhccc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--------SPFQAAQNSLLMTNIMHLFQYLSG   84 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--------~~~~~g~i~~~g~~~~~~~~~~~~   84 (178)
                      ..+++|||++|..|+    ..++.|+||+||+       |+++.+.|.        ..|++|.+.+--..         -
T Consensus       396 ryvlr~vNL~ikpGd----vvaVvGqSGaGKt-------tllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---------~  455 (593)
T COG2401         396 RYVLRNLNLEIKPGD----VVAVVGQSGAGKT-------TLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---------V  455 (593)
T ss_pred             eeeeeceeeEecCCC----eEEEEecCCCCcc-------hHHHHHHHHhhcccccccCCCCCceeccccc---------h
Confidence            568999999999999    7889999999999       666666655        45778877332111         1


Q ss_pred             eEEecCC--CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc--cccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860           85 IGYCPQF--NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE--YRHRVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        85 ig~v~Q~--~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      -+++|-.  +.+ ...|+.|++.-      .  --+-..+.++|...|+.+  .-.+++++||-|||.|+.||++++..|
T Consensus       456 ~a~iPge~Ep~f-~~~tilehl~s------~--tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerp  526 (593)
T COG2401         456 SALIPGEYEPEF-GEVTILEHLRS------K--TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERP  526 (593)
T ss_pred             hhccCccccccc-CchhHHHHHhh------c--cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCC
Confidence            2234433  222 24566666531      1  112345778899999963  446778999999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~  176 (178)
                      .+++.||=.|.||+.+
T Consensus       527 n~~~iDEF~AhLD~~T  542 (593)
T COG2401         527 NVLLIDEFAAHLDELT  542 (593)
T ss_pred             CcEEhhhhhhhcCHHH
Confidence            9999999999999865

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.35  E-value=7.4e-13  Score=128.16  Aligned_cols=80  Identities=19%  Similarity=0.178  Sum_probs=58.6

Q ss_pred             CCCHHHHHHHHHHhcCCCCCChhHHHH------HHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCC--CeEEeeC
Q psy860           97 HLTAQEMLECFSALRGIPGVKSGPIID------YWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDR--DDGFQKL  167 (178)
Q Consensus        97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~------~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P--~~lllDE  167 (178)
                      .|++.|...++..+.... .......+      +.|..+||... .++.+.+|||||+|||.||+||+.+|  +++||||
T Consensus       426 ~m~i~~l~~~~~~l~~~~-~~~~~il~ei~~RL~~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDE  504 (1809)
T PRK00635        426 QMSLQELFIFLSQLPSKS-LSIEEVLQGLKSRLSILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDE  504 (1809)
T ss_pred             cCCHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence            567777766654442100 01111121      23566788866 68999999999999999999999999  8999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      ||+|||+.++
T Consensus       505 PTagLD~~~~  514 (1809)
T PRK00635        505 PSIGLHPQDT  514 (1809)
T ss_pred             CccCCCHHHH
Confidence            9999999754

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.35  E-value=2.4e-13  Score=102.39  Aligned_cols=36  Identities=19%  Similarity=0.019  Sum_probs=33.6

Q ss_pred             CChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCCC
Q psy860          142 YSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       142 LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~~  177 (178)
                      ||+||+||+.+|++|+.    +|+++++|||++|+|+..+
T Consensus        78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~  117 (162)
T cd03227          78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDG  117 (162)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHH
Confidence            99999999999999987    7899999999999999753

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.34  E-value=3.3e-13  Score=109.90  Aligned_cols=38  Identities=16%  Similarity=-0.091  Sum_probs=33.4

Q ss_pred             CCCChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCCC
Q psy860          140 GRYSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       140 ~~LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|||||+||+++|++++.    +|+++++||||++||+..+
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~  210 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVA  210 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHH
Confidence            3499999999999997654    9999999999999998753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.32  E-value=5.2e-12  Score=113.48  Aligned_cols=71  Identities=21%  Similarity=0.166  Sum_probs=53.0

Q ss_pred             CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCC---CeEEeeCCCCCCC
Q psy860           98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDR---DDGFQKLPFSSQN  173 (178)
Q Consensus        98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P---~~lllDEPt~gLD  173 (178)
                      |||.|-..||....     .. .+.-+.|..+||. -..-++..+||||+-|||-+|.-|....   -+.||||||+||-
T Consensus       784 MTveEA~~FF~~~p-----~I-~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH  857 (935)
T COG0178         784 MTVEEALEFFEAIP-----KI-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH  857 (935)
T ss_pred             ccHHHHHHHHhcch-----HH-HHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCC
Confidence            56666555554221     12 2334456678986 4557889999999999999999999888   9999999999995


Q ss_pred             C
Q psy860          174 L  174 (178)
Q Consensus       174 ~  174 (178)
                      +
T Consensus       858 ~  858 (935)
T COG0178         858 F  858 (935)
T ss_pred             H
Confidence            4

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.29  E-value=1.9e-12  Score=105.18  Aligned_cols=39  Identities=21%  Similarity=0.168  Sum_probs=35.1

Q ss_pred             CCCCChHHHHHHHHHHHHh---------CCCCeEEeeCCCCCCCCCCC
Q psy860          139 SGRYSGGNKRKLSTAMALI---------GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       139 ~~~LSgGqkQRv~IAraL~---------~~P~~lllDEPt~gLD~~~~  177 (178)
                      ...+|+||||++.||++|+         .+|+++++||||++||+..+
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~  228 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQ  228 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHH
Confidence            4568999999999999986         79999999999999999753

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.27  E-value=5.1e-13  Score=104.41  Aligned_cols=109  Identities=10%  Similarity=0.020  Sum_probs=77.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE-EecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG-YCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig-~v~Q~   91 (178)
                      ..+.+|+++++..|+    +..|.|+||+|||       |+++.+.++.                   +..++| ++   
T Consensus        16 ~~v~~~~~~~~~~~~----~~~l~G~n~~GKs-------tll~~i~~~~-------------------~la~~G~~v---   62 (204)
T cd03282          16 NFIPNDIYLTRGSSR----FHIITGPNMSGKS-------TYLKQIALLA-------------------IMAQIGCFV---   62 (204)
T ss_pred             cEEEeeeEEeeCCCc----EEEEECCCCCCHH-------HHHHHHHHHH-------------------HHHHcCCCc---
Confidence            468999999999999    7779999999999       8888765542                   011222 12   


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      |..+..+++.+++                     +..++..+..++..+++|+|++|. ..+.+++.+|+++++|||++|
T Consensus        63 pa~~~~l~~~d~I---------------------~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~g  120 (204)
T cd03282          63 PAEYATLPIFNRL---------------------LSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRG  120 (204)
T ss_pred             chhhcCccChhhe---------------------eEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCC
Confidence            2233444554444                     223344445567778999999976 455668899999999999999


Q ss_pred             CCCCC
Q psy860          172 QNLYN  176 (178)
Q Consensus       172 LD~~~  176 (178)
                      +|+..
T Consensus       121 t~~~~  125 (204)
T cd03282         121 TSSAD  125 (204)
T ss_pred             CCHHH
Confidence            99853

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.14  E-value=2.9e-12  Score=99.68  Aligned_cols=40  Identities=8%  Similarity=-0.080  Sum_probs=31.9

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          136 HRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       136 ~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      ....+.+|.+++| +..+.+++.+|+++++||||+|+|+..
T Consensus        86 ~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~  125 (202)
T cd03243          86 SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAE  125 (202)
T ss_pred             cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHH
Confidence            3445667877776 555678889999999999999999964

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.10  E-value=1.8e-11  Score=95.78  Aligned_cols=38  Identities=21%  Similarity=-0.020  Sum_probs=32.9

Q ss_pred             CCCChH--HHHHHHHHHHHhCCCCeEEeeCCC-----CCCCCCCC
Q psy860          140 GRYSGG--NKRKLSTAMALIGDRDDGFQKLPF-----SSQNLYNT  177 (178)
Q Consensus       140 ~~LSgG--qkQRv~IAraL~~~P~~lllDEPt-----~gLD~~~~  177 (178)
                      +..||+  |++++.||++++.+|+++++||||     ++|||..+
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~  193 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELV  193 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHH
Confidence            444444  889999999999999999999999     99999754

>KOG0063|consensus

Probab=98.96  E-value=3.1e-10  Score=96.28  Aligned_cols=136  Identities=14%  Similarity=0.122  Sum_probs=87.2

Q ss_pred             cHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEec----CCC---CCCC
Q psy860           24 TAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP----QFN---GINE   96 (178)
Q Consensus        24 ~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~----Q~~---~l~~   96 (178)
                      +.|++.+    ++|-||.||+       |-++.+.|-.+|.-|.- .++-+..+      .++|..    |+.   .+-.
T Consensus        98 rpg~vlg----lvgtngigks-------tAlkilagk~kpnlg~~-~~pp~w~~------il~~frgselq~yftk~le~  159 (592)
T KOG0063|consen   98 RPGQVLG----LVGTNGIGKS-------TALKILAGKQKPNLGRY-DNPPDWQE------ILTYFRGSELQNYFTKILED  159 (592)
T ss_pred             Ccchhcc----ccccCcccHH-------HHHHHHhCCCCCCCCCC-CCCcchHH------HhhhhhhHHHhhhhhhhccc
Confidence            4788555    9999999999       88999999888876652 11111111      111110    110   0000


Q ss_pred             C---CCHHHHHHHHHH-hc----C-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860           97 H---LTAQEMLECFSA-LR----G-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL  167 (178)
Q Consensus        97 ~---ltv~e~l~~~~~-~~----~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE  167 (178)
                      +   ..-.+.+....+ ..    + +.....++...++.+.+.|....++.+.+||||+-||.+||.+-+++.|+.++||
T Consensus       160 ~lk~~~kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDE  239 (592)
T KOG0063|consen  160 NLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDE  239 (592)
T ss_pred             cccCcCChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecC
Confidence            0   000112211110 10    0 1112233355667888888888999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy860          168 PFSSQNLYNT  177 (178)
Q Consensus       168 Pt~gLD~~~~  177 (178)
                      |.+.||++.|
T Consensus       240 pSsYLDVKQR  249 (592)
T KOG0063|consen  240 PSSYLDVKQR  249 (592)
T ss_pred             CcccchHHHh
Confidence            9999998754

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.94  E-value=7.5e-11  Score=90.66  Aligned_cols=49  Identities=6%  Similarity=-0.041  Sum_probs=37.2

Q ss_pred             HHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          127 DLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       127 ~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      ..++..+..++..+++|+|++|...+.+. +.+|+++++|||++|+|+..
T Consensus        47 ~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~   95 (185)
T smart00534       47 TRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYD   95 (185)
T ss_pred             EEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHH
Confidence            34555566677889999999984444432 35999999999999999864

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.90  E-value=9.4e-10  Score=97.38  Aligned_cols=51  Identities=18%  Similarity=0.119  Sum_probs=40.6

Q ss_pred             HHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh----------CCCCeEEeeCCC-CCCCCCCC
Q psy860          124 YWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI----------GDRDDGFQKLPF-SSQNLYNT  177 (178)
Q Consensus       124 ~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~----------~~P~~lllDEPt-~gLD~~~~  177 (178)
                      ..++..|..   +..+.+||||||||++||+||+          .+|+++|||||| ++||+.++
T Consensus       454 ~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~  515 (562)
T PHA02562        454 ETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGT  515 (562)
T ss_pred             hHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHH
Confidence            344444442   3467899999999999999988          599999999998 78998753

>TIGR01069 mutS2 MutS2 family protein

Probab=98.90  E-value=3.5e-10  Score=103.57  Aligned_cols=104  Identities=12%  Similarity=-0.040  Sum_probs=67.6

Q ss_pred             hhhhccHH-HHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-CCcccccccccccccccHHhhccceEEecCCCCCCC
Q psy860           19 INEHLTAQ-EMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-SPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINE   96 (178)
Q Consensus        19 v~~~~~~g-~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~   96 (178)
                      +|+.+..+ +    ...|.||||+|||       |+++.+.+. ..++.|                   .+||.....  
T Consensus       314 ~di~l~~~~~----~liItGpNg~GKS-------TlLK~i~~~~l~aq~G-------------------~~Vpa~~~~--  361 (771)
T TIGR01069       314 FTLNLKFEKR----VLAITGPNTGGKT-------VTLKTLGLLALMFQSG-------------------IPIPANEHS--  361 (771)
T ss_pred             ceeEeCCCce----EEEEECCCCCCch-------HHHHHHHHHHHHHHhC-------------------CCccCCccc--
Confidence            67777765 5    6779999999999       898888765 222222                   145544321  


Q ss_pred             CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860           97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus        97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      .+...+.+.     ..                ++-.+......++||+||+|++.|++++ .+|+++|+|||++|+||..
T Consensus       362 ~~~~~d~i~-----~~----------------i~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~e  419 (771)
T TIGR01069       362 EIPYFEEIF-----AD----------------IGDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDE  419 (771)
T ss_pred             cccchhhee-----ee----------------cChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHH
Confidence            011111110     00                0111122344788999999999999887 7999999999999999864

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.89  E-value=2.3e-10  Score=80.51  Aligned_cols=74  Identities=12%  Similarity=0.113  Sum_probs=60.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH--hhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF--QYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~--~~~~~ig~v~Q   90 (178)
                      .++|++++|++..||    +.+|+|+||+|||       ||+..+.      .|.+.++|.++....  +.++.++++||
T Consensus         2 ~~aL~~vsl~i~~ge----~v~I~GpSGsGKS-------TLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q   64 (107)
T cd00820           2 TTSLHGVLVDVYGKV----GVLITGDSGIGKT-------ELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPE   64 (107)
T ss_pred             ceEEEeeEEEEcCCE----EEEEEcCCCCCHH-------HHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEech
Confidence            378999999999999    8889999999999       8888764      678899998886653  34556778888


Q ss_pred             CCCCCCCCCHHHHHHH
Q psy860           91 FNGINEHLTAQEMLEC  106 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~  106 (178)
                      +   ....|++||+.+
T Consensus        65 ~---lf~~ti~~Ni~~   77 (107)
T cd00820          65 L---GLEIRLRLNIFL   77 (107)
T ss_pred             h---cchhhHHhhcee
Confidence            7   455789999977

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.88  E-value=1.5e-09  Score=88.34  Aligned_cols=63  Identities=13%  Similarity=0.051  Sum_probs=48.8

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEecCCCCCCCCCCHHHH
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCPQFNGINEHLTAQEM  103 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~Q~~~l~~~ltv~e~  103 (178)
                      .+|+|++|+|||       |+++.+.+..+|++|++.++|+++..   ..+++..++++||+. +...++|.++
T Consensus       114 ~~i~g~~g~GKt-------tl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~  179 (270)
T TIGR02858       114 TLIISPPQCGKT-------TLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG  179 (270)
T ss_pred             EEEEcCCCCCHH-------HHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence            378999999999       99999999999999999999998753   345555677788853 3445555443

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR00618 sbcc exonuclease SbcC

Probab=98.81  E-value=2.5e-09  Score=101.18  Aligned_cols=47  Identities=26%  Similarity=0.104  Sum_probs=41.6

Q ss_pred             CCCccccCcCCCCChHHHHHHHHHHHHhC----------CCCeEEeeCCCCCCCCCC
Q psy860          130 GLTEYRHRVSGRYSGGNKRKLSTAMALIG----------DRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       130 ~L~~~~~~~~~~LSgGqkQRv~IAraL~~----------~P~~lllDEPt~gLD~~~  176 (178)
                      ++....++++.+|||||++||+||+||+.          +|++||+||||+|||+.+
T Consensus       939 ~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~  995 (1042)
T TIGR00618       939 DAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDS  995 (1042)
T ss_pred             eCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHH
Confidence            34456678899999999999999999985          799999999999999875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.79  E-value=1.5e-09  Score=85.57  Aligned_cols=104  Identities=14%  Similarity=-0.040  Sum_probs=62.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC-CcccccccccccccccHHhhccceEEecCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS-PFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~-~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .+.+|++++... +    +.+|.|+||+|||       |+++.+.+.. -++.|.         .....+..++++.|  
T Consensus        19 ~v~n~~~l~~~~-~----~~~l~Gpn~sGKs-------tllr~i~~~~~l~~~g~---------~vp~~~~~i~~~~~--   75 (216)
T cd03284          19 FVPNDTELDPER-Q----ILLITGPNMAGKS-------TYLRQVALIALLAQIGS---------FVPASKAEIGVVDR--   75 (216)
T ss_pred             eEeeeEEecCCc-e----EEEEECCCCCChH-------HHHHHHHHHHHHhccCC---------eeccccceecceee--
Confidence            378999999887 5    7889999999999       8888765431 111111         01111124555543  


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH--hCCCCeEEeeCC--
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL--IGDRDDGFQKLP--  168 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL--~~~P~~lllDEP--  168 (178)
                       +++.+++.+++...                                  .|-=...++.+++++  +.+|+++++|||  
T Consensus        76 -i~~~~~~~~~ls~g----------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~  120 (216)
T cd03284          76 -IFTRIGASDDLAGG----------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGR  120 (216)
T ss_pred             -EeccCCchhhhccC----------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence             45556665554321                                  111122233344443  579999999999  


Q ss_pred             -CCCCCCC
Q psy860          169 -FSSQNLY  175 (178)
Q Consensus       169 -t~gLD~~  175 (178)
                       |+++|+.
T Consensus       121 gt~~lD~~  128 (216)
T cd03284         121 GTSTYDGL  128 (216)
T ss_pred             CCChHHHH
Confidence             8888864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.77  E-value=3.5e-09  Score=100.11  Aligned_cols=43  Identities=26%  Similarity=0.182  Sum_probs=39.4

Q ss_pred             ccCcCCCCChHHHHHHHHHHHHhC--------CCCeEEeeCCCCCCCCCCC
Q psy860          135 RHRVSGRYSGGNKRKLSTAMALIG--------DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       135 ~~~~~~~LSgGqkQRv~IAraL~~--------~P~~lllDEPt~gLD~~~~  177 (178)
                      .++++.+|||||+++|+||+||+.        +|++||+||||++||+.+.
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~  993 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETL  993 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHH
Confidence            458899999999999999999995        8999999999999998753

>TIGR00606 rad50 rad50

Probab=98.75  E-value=5.7e-09  Score=100.71  Aligned_cols=40  Identities=23%  Similarity=0.169  Sum_probs=37.1

Q ss_pred             CcCCCCChHHHH------HHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          137 RVSGRYSGGNKR------KLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       137 ~~~~~LSgGqkQ------Rv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      ...+.|||||||      |++||+|++.+|++|+|||||++||+.+
T Consensus      1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~ 1240 (1311)
T TIGR00606      1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDREN 1240 (1311)
T ss_pred             CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHH
Confidence            345789999999      9999999999999999999999999875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00634 recN DNA repair protein RecN

Probab=98.75  E-value=4.4e-09  Score=93.62  Aligned_cols=37  Identities=11%  Similarity=-0.070  Sum_probs=33.9

Q ss_pred             CCCChHHHHHHHHHHHHhCC----CCeEEeeCCCCCCCCCC
Q psy860          140 GRYSGGNKRKLSTAMALIGD----RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       140 ~~LSgGqkQRv~IAraL~~~----P~~lllDEPt~gLD~~~  176 (178)
                      ..|||||+||++||++++..    |+++||||||+|||+.+
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~  479 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGET  479 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHH
Confidence            46899999999999999985    69999999999999865

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.74  E-value=7.3e-09  Score=81.46  Aligned_cols=31  Identities=13%  Similarity=-0.092  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860          145 GNKRKLSTAMALIGDRDDGFQKLPFSSQNLY  175 (178)
Q Consensus       145 GqkQRv~IAraL~~~P~~lllDEPt~gLD~~  175 (178)
                      -+.||+.+|++++.+|+++++|||++|+|+.
T Consensus        94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~  124 (213)
T cd03281          94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTE  124 (213)
T ss_pred             HHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence            3678999999999999999999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK01156 chromosome segregation protein; Provisional

Probab=98.74  E-value=1.6e-08  Score=94.26  Aligned_cols=40  Identities=20%  Similarity=0.100  Sum_probs=36.1

Q ss_pred             CcCCCCChHHHHHHHH------HHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          137 RVSGRYSGGNKRKLST------AMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       137 ~~~~~LSgGqkQRv~I------AraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      ..+..||||||+|++|      |++++.+|++++|||||++||+..
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~  842 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDR  842 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHH
Confidence            4688999999999975      599999999999999999999864

>PRK10869 recombination and repair protein; Provisional

Probab=98.68  E-value=1.1e-08  Score=90.76  Aligned_cols=36  Identities=14%  Similarity=0.028  Sum_probs=33.2

Q ss_pred             CCChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCC
Q psy860          141 RYSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       141 ~LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~  176 (178)
                      .+||||+|||+||++++.    +|+++|||||++|||+.+
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~  469 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPT  469 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHH
Confidence            479999999999999997    689999999999999864

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.66  E-value=2.1e-08  Score=87.32  Aligned_cols=131  Identities=12%  Similarity=0.109  Sum_probs=91.0

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      .++++.++.++.|+    ..+++|+||+|||       |++..+.+......|..               .|+++.++. 
T Consensus       244 ~~~~~~~~~~~~g~----Vi~LvGpnGvGKT-------TTiaKLA~~~~~~~G~~---------------kV~LI~~Dt-  296 (484)
T PRK06995        244 PVLDSEDALLDRGG----VFALMGPTGVGKT-------TTTAKLAARCVMRHGAS---------------KVALLTTDS-  296 (484)
T ss_pred             hhccCccccccCCc----EEEEECCCCccHH-------HHHHHHHHHHHHhcCCC---------------eEEEEeCCc-
Confidence            45667777788887    6779999999999       77777776544443331               588999886 


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHH-HHHHHHHHhCCC-----CeEEeeC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR-KLSTAMALIGDR-----DDGFQKL  167 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQ-Rv~IAraL~~~P-----~~lllDE  167 (178)
                        +..++.|++.+++...+++........+...+..++.+.....+.+.+..++- .+.-..+++.++     .+|+||.
T Consensus       297 --~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdA  374 (484)
T PRK06995        297 --YRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNA  374 (484)
T ss_pred             --cchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeC
Confidence              55789999999888877665444445556666777776666677775444432 233444455554     7899999


Q ss_pred             CCCCCC
Q psy860          168 PFSSQN  173 (178)
Q Consensus       168 Pt~gLD  173 (178)
                      ++.+-|
T Consensus       375 t~~~~~  380 (484)
T PRK06995        375 TSHGDT  380 (484)
T ss_pred             CCcHHH
Confidence            987754

>PRK03918 chromosome segregation protein; Provisional

Probab=98.65  E-value=1.1e-08  Score=95.07  Aligned_cols=46  Identities=17%  Similarity=0.133  Sum_probs=38.3

Q ss_pred             CCccccCcCCCCChHHHH------HHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          131 LTEYRHRVSGRYSGGNKR------KLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       131 L~~~~~~~~~~LSgGqkQ------Rv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +....++++..|||||+|      |+++|++++.+|+++|+||||++||+..
T Consensus       778 l~~g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~  829 (880)
T PRK03918        778 VYQGKERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEER  829 (880)
T ss_pred             eCCCCcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHH
Confidence            344446788999999999      5566678889999999999999999865

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.62  E-value=1.8e-08  Score=95.40  Aligned_cols=44  Identities=14%  Similarity=-0.008  Sum_probs=38.8

Q ss_pred             cccCcCCCCChHHHHHHHHHHHHh----CCCCeEEeeCCCCCCCCCCC
Q psy860          134 YRHRVSGRYSGGNKRKLSTAMALI----GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       134 ~~~~~~~~LSgGqkQRv~IAraL~----~~P~~lllDEPt~gLD~~~~  177 (178)
                      ..+..+..||||||||++||++++    ..|+++||||||++||+.++
T Consensus      1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~ 1129 (1179)
T TIGR02168      1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANV 1129 (1179)
T ss_pred             CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHH
Confidence            456788999999999999999985    67799999999999998653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.48  E-value=9.3e-08  Score=82.30  Aligned_cols=110  Identities=9%  Similarity=-0.017  Sum_probs=79.0

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      .+++++ +.+..|+    ..+|+|++|+||+       ||++.+.+..+++.+.+.                 ++.|.. 
T Consensus       145 raID~l-l~I~~Gq----ri~I~G~sG~GKT-------tLl~~Ia~~~~~~~gvI~-----------------~iGerg-  194 (432)
T PRK06793        145 KSIDSM-LTIGIGQ----KIGIFAGSGVGKS-------TLLGMIAKNAKADINVIS-----------------LVGERG-  194 (432)
T ss_pred             EEEecc-ceecCCc----EEEEECCCCCChH-------HHHHHHhccCCCCeEEEE-----------------eCCCCc-
Confidence            678874 9999999    6779999999999       999999998887766542                 222321 


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHh-------CCCCeEEe
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALI-------GDRDDGFQ  165 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~-------~~P~~lll  165 (178)
                          .+|.|.+.......                  ++.. ..=....+.|.|+|+|+..+.+.+       .++-++++
T Consensus       195 ----~ev~e~~~~~l~~~------------------gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlil  252 (432)
T PRK06793        195 ----REVKDFIRKELGEE------------------GMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMM  252 (432)
T ss_pred             ----ccHHHHHHHHhhhc------------------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence                34555443211111                  1110 111446778999999999999888       89999999


Q ss_pred             eCCCCCCCCC
Q psy860          166 KLPFSSQNLY  175 (178)
Q Consensus       166 DEPt~gLD~~  175 (178)
                      |+||.+.|+.
T Consensus       253 DslTr~a~A~  262 (432)
T PRK06793        253 DSVTRFADAR  262 (432)
T ss_pred             cchHHHHHHH
Confidence            9999998864

>PRK00064 recF recombination protein F; Reviewed

Probab=98.48  E-value=5e-08  Score=82.48  Aligned_cols=40  Identities=18%  Similarity=0.010  Sum_probs=35.8

Q ss_pred             cCCCCChHHHHHHHHHHHHh---------CCCCeEEeeCCCCCCCCCCC
Q psy860          138 VSGRYSGGNKRKLSTAMALI---------GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       138 ~~~~LSgGqkQRv~IAraL~---------~~P~~lllDEPt~gLD~~~~  177 (178)
                      ....+|.||||++.+|++|+         .+|+++++|||+++||+..+
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~  318 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRR  318 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHH
Confidence            34679999999999999996         79999999999999998754

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.44  E-value=8.4e-08  Score=92.85  Aligned_cols=44  Identities=16%  Similarity=-0.025  Sum_probs=36.6

Q ss_pred             cccCcCCCCChHHHHHHH----HHHH--------HhCCCCeEEeeCCCCCCCCCCC
Q psy860          134 YRHRVSGRYSGGNKRKLS----TAMA--------LIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       134 ~~~~~~~~LSgGqkQRv~----IAra--------L~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ..++.++.||||||||++    +|++        +..+|++++|||||+|||+.++
T Consensus      1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~ 1295 (1353)
T TIGR02680      1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNAR 1295 (1353)
T ss_pred             chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHH
Confidence            345567899999999996    5755        5589999999999999998754

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.43  E-value=9.6e-08  Score=90.67  Aligned_cols=43  Identities=12%  Similarity=-0.165  Sum_probs=37.8

Q ss_pred             ccCcCCCCChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCCC
Q psy860          135 RHRVSGRYSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       135 ~~~~~~~LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~~  177 (178)
                      ..+.+..||||||++++||++++.    .|+++|||||+++||+.++
T Consensus      1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~ 1114 (1164)
T TIGR02169      1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNV 1114 (1164)
T ss_pred             CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHH
Confidence            345678999999999999999984    7899999999999998753

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00611 recf recF protein

Probab=98.42  E-value=8.6e-08  Score=81.17  Aligned_cols=38  Identities=18%  Similarity=-0.007  Sum_probs=35.2

Q ss_pred             CCCChHHHHHHHHHHHHhC---------CCCeEEeeCCCCCCCCCCC
Q psy860          140 GRYSGGNKRKLSTAMALIG---------DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       140 ~~LSgGqkQRv~IAraL~~---------~P~~lllDEPt~gLD~~~~  177 (178)
                      ..+|.||||++.||.+|+.         +|++++||||+++||+..+
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r  320 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRR  320 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHH
Confidence            3689999999999999999         9999999999999998654

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.39  E-value=2.2e-07  Score=63.37  Aligned_cols=41  Identities=27%  Similarity=0.229  Sum_probs=29.9

Q ss_pred             cCcCCCCChHHHH-HHH------HHHHHhC------CCCeEEeeCCCCCCCCCC
Q psy860          136 HRVSGRYSGGNKR-KLS------TAMALIG------DRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       136 ~~~~~~LSgGqkQ-Rv~------IAraL~~------~P~~lllDEPt~gLD~~~  176 (178)
                      .+..+.+|||||| .+.      ++.++..      .|++++|||||++||+.+
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~   80 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEEN   80 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHH
Confidence            5678999999995 333      3334444      379999999999999864

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.36  E-value=1.6e-07  Score=86.40  Aligned_cols=43  Identities=5%  Similarity=-0.118  Sum_probs=38.1

Q ss_pred             ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          133 EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       133 ~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +...+..++||+||+|++.|++++ .+|+++|+|||++|+||..
T Consensus       382 ~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~e  424 (782)
T PRK00409        382 QSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDE  424 (782)
T ss_pred             cchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHH
Confidence            344567889999999999999999 8999999999999999864

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.34  E-value=2.6e-07  Score=71.33  Aligned_cols=113  Identities=10%  Similarity=-0.065  Sum_probs=69.5

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcC
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRG  112 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~  112 (178)
                      .+|.|++|||||       |+.+.+.+...  .+                 .+.+++++. ++..++..+........+.
T Consensus         2 igi~G~~GsGKS-------Tl~~~l~~~l~--~~-----------------~~~v~~~D~-~~~~~~~~~~~~~~~~~~~   54 (198)
T cd02023           2 IGIAGGSGSGKT-------TVAEEIIEQLG--NP-----------------KVVIISQDS-YYKDLSHEELEERKNNNYD   54 (198)
T ss_pred             EEEECCCCCCHH-------HHHHHHHHHhC--CC-----------------CeEEEEecc-cccccccccHHHhccCCCC
Confidence            468999999999       88888877651  11                 234444442 2222222222211111112


Q ss_pred             CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860          113 IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLY  175 (178)
Q Consensus       113 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~  175 (178)
                      .+.....+...+.++.+......+.+..++|.|++++..+   .+..|+++|+|+|+.+.++.
T Consensus        55 ~~~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~  114 (198)
T cd02023          55 HPDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE  114 (198)
T ss_pred             CCCcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence            2222223344566666666666677888999999876655   57889999999999998753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14079 recF recombination protein F; Provisional

Probab=98.29  E-value=3.8e-07  Score=76.80  Aligned_cols=38  Identities=16%  Similarity=0.065  Sum_probs=34.7

Q ss_pred             CCCChHHHHHHHHHHHHh---------CCCCeEEeeCCCCCCCCCCC
Q psy860          140 GRYSGGNKRKLSTAMALI---------GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       140 ~~LSgGqkQRv~IAraL~---------~~P~~lllDEPt~gLD~~~~  177 (178)
                      ..+|+|||+++.+|+.|+         .+|++++||||+++||+..+
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~  308 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRR  308 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHH
Confidence            358999999999999999         99999999999999998643

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.26  E-value=7.4e-07  Score=71.76  Aligned_cols=34  Identities=18%  Similarity=0.052  Sum_probs=30.9

Q ss_pred             CCChHH--------HHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          141 RYSGGN--------KRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       141 ~LSgGq--------kQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      .+|||+        +||+++||++..++++.+|  ||+.+|..+
T Consensus       129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~  170 (249)
T cd01128         129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGS  170 (249)
T ss_pred             CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCC
Confidence            369999        9999999999899999999  999999643

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.16  E-value=2.9e-07  Score=79.79  Aligned_cols=67  Identities=13%  Similarity=0.032  Sum_probs=52.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc-cccccccccccHHh-hccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA-QNSLLMTNIMHLFQ-YLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g-~i~~~g~~~~~~~~-~~~~ig~v~Q   90 (178)
                      ..+|++||+++++||    +.+|+|+||||||       ||++  .++..|++| .+.++|+++..+.+ ....+-+|||
T Consensus        19 ~~vL~~Vsl~i~~GE----iv~L~G~SGsGKS-------TLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ   85 (504)
T TIGR03238        19 ERILVKFNKELPSSS----LLFLCGSSGDGKS-------EILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFD   85 (504)
T ss_pred             HHHHhCCceeecCCC----EEEEECCCCCCHH-------HHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHH
Confidence            468999999999999    8889999999999       9999  677777777 69999998865321 1111127888


Q ss_pred             CC
Q psy860           91 FN   92 (178)
Q Consensus        91 ~~   92 (178)
                      +.
T Consensus        86 ~f   87 (504)
T TIGR03238        86 GF   87 (504)
T ss_pred             hh
Confidence            63

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.14  E-value=1.2e-06  Score=75.49  Aligned_cols=86  Identities=15%  Similarity=0.119  Sum_probs=65.8

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc---cccccccccHH--------hhc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN---SLLMTNIMHLF--------QYL   82 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i---~~~g~~~~~~~--------~~~   82 (178)
                      .+++++ +.|.+|+    ..+|+|+||+|||       |+++++.+..+++.+.+   ...+.++..+.        ..|
T Consensus       144 ~aID~l-l~I~~GQ----~igI~G~sGaGKS-------TLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~r  211 (434)
T PRK07196        144 NAINGL-LTIGKGQ----RVGLMAGSGVGKS-------VLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAK  211 (434)
T ss_pred             eeccce-EeEecce----EEEEECCCCCCcc-------HHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccce
Confidence            799999 9999999    7789999999999       89999999887775333   23333333221        124


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhc
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALR  111 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~  111 (178)
                      ..+++++|+...+..+++.++..+.+.++
T Consensus       212 svvv~~~~d~s~~~rl~a~e~a~~iAEyf  240 (434)
T PRK07196        212 SVVVAAPADESPLMRIKATELCHAIATYY  240 (434)
T ss_pred             EEEEEecCCCChhhhHHHHHHHHHHHHHh
Confidence            46999999999999999999887766543

>PRK02224 chromosome segregation protein; Provisional

Probab=98.07  E-value=1.7e-06  Score=80.60  Aligned_cols=40  Identities=13%  Similarity=0.021  Sum_probs=34.2

Q ss_pred             CcCCCCChHHHH------HHHHHHHHhCC-----C-CeEEeeCCCCCCCCCC
Q psy860          137 RVSGRYSGGNKR------KLSTAMALIGD-----R-DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       137 ~~~~~LSgGqkQ------Rv~IAraL~~~-----P-~~lllDEPt~gLD~~~  176 (178)
                      ..+..||||||+      |+++|++++.+     | ..+|+||||++||+..
T Consensus       777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~  828 (880)
T PRK02224        777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGH  828 (880)
T ss_pred             cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHH
Confidence            347799999999      89999999864     3 6799999999999865

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.01  E-value=1.3e-05  Score=60.72  Aligned_cols=47  Identities=4%  Similarity=-0.231  Sum_probs=38.6

Q ss_pred             HHcCCCccccCcCCCCChHHHH------HHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860          127 DLLGLTEYRHRVSGRYSGGNKR------KLSTAMALIGDRDDGFQKLPFSSQN  173 (178)
Q Consensus       127 ~~~~L~~~~~~~~~~LSgGqkQ------Rv~IAraL~~~P~~lllDEPt~gLD  173 (178)
                      ...+.....+..+..+|+|++|      +...+.+...+|+++++|||++.+|
T Consensus        57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~  109 (187)
T cd01124          57 EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLL  109 (187)
T ss_pred             HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence            3455556678888999999998      6666666788999999999999998

A related protein is found in archaea.

>PRK06315 type III secretion system ATPase; Provisional

Probab=97.99  E-value=6.8e-06  Score=71.08  Aligned_cols=117  Identities=13%  Similarity=0.077  Sum_probs=76.6

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-ccccccccc---cccccHH--hh---ccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-QAAQNSLLM---TNIMHLF--QY---LSG   84 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-~~g~i~~~g---~~~~~~~--~~---~~~   84 (178)
                      .+++++ |++..|+    ..+|+|.||+|||       |+++.+.+..+. +.+.+.+.|   +++.++.  .+   ...
T Consensus       153 ~aID~~-l~i~~Gq----~i~I~G~sG~GKS-------tLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~  220 (442)
T PRK06315        153 RCIDGM-LTVARGQ----RIGIFAGAGVGKS-------SLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMK  220 (442)
T ss_pred             EEEecc-ccccCCc----EEEEECCCCCCcc-------hHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCc
Confidence            688988 9999999    6779999999999       888988887743 445555544   4443321  11   123


Q ss_pred             eEEe-----cCCCC--CCCCCCHHHHHHHHHHhcCCC---CCChhHHHHHHHHHcCCC-----ccccCcCCCCC
Q psy860           85 IGYC-----PQFNG--INEHLTAQEMLECFSALRGIP---GVKSGPIIDYWIDLLGLT-----EYRHRVSGRYS  143 (178)
Q Consensus        85 ig~v-----~Q~~~--l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~L~-----~~~~~~~~~LS  143 (178)
                      .+++     +|++.  +.+.+ +...+..+.+..+..   ..+...++.++++.+++.     .....+++.||
T Consensus       221 ~svvvvats~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS  293 (442)
T PRK06315        221 RSVIVVSTSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS  293 (442)
T ss_pred             eEEEEEeCCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence            4555     88763  44444 444444333333322   245567888899999993     46678888888

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.93  E-value=1.3e-06  Score=69.15  Aligned_cols=43  Identities=9%  Similarity=-0.105  Sum_probs=35.2

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-CCccccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-SPFQAAQ   67 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~~~~~g~   67 (178)
                      .+.+|+++.+..|+    +..|.|+||+|||       |+++.+.+. ..++.|.
T Consensus        19 ~v~n~i~~~~~~g~----~~~itG~N~~GKS-------tll~~i~~~~~la~~G~   62 (222)
T cd03287          19 FVPNDIHLSAEGGY----CQIITGPNMGGKS-------SYIRQVALITIMAQIGS   62 (222)
T ss_pred             EEEEeEEEEecCCc----EEEEECCCCCCHH-------HHHHHHHHHHHHHhCCC
Confidence            57899999999999    7779999999999       888877763 4455555

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=97.89  E-value=4.3e-05  Score=69.82  Aligned_cols=77  Identities=19%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             CCCHHHHHHHHHHhcCCCCCChhHHHHH----------HHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCC--CeE
Q psy860           97 HLTAQEMLECFSALRGIPGVKSGPIIDY----------WIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDR--DDG  163 (178)
Q Consensus        97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~----------~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P--~~l  163 (178)
                      .+++.+...|+..+. .. .+....++.          .|-.+||.- ..+|...+|||||.||+-+|.-+-.+=  =+.
T Consensus       428 ~msi~~~~~f~~~l~-l~-~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY  505 (935)
T COG0178         428 EMSIADALEFFENLK-LS-EKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY  505 (935)
T ss_pred             hccHHHHHHHHHhCC-Cc-hhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence            466777776665443 11 111122222          233467763 458899999999999999999887654  478


Q ss_pred             EeeCCCCCCCCC
Q psy860          164 FQKLPFSSQNLY  175 (178)
Q Consensus       164 llDEPt~gLD~~  175 (178)
                      +||||+.||=+.
T Consensus       506 VLDEPSIGLHqr  517 (935)
T COG0178         506 VLDEPSIGLHQR  517 (935)
T ss_pred             EecCCccCCChh
Confidence            999999999765

>PRK13695 putative NTPase; Provisional

Probab=97.72  E-value=2.7e-06  Score=64.48  Aligned_cols=39  Identities=3%  Similarity=-0.096  Sum_probs=32.7

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC--CCCCCCC
Q psy860          136 HRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL--PFSSQNL  174 (178)
Q Consensus       136 ~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE--Pt~gLD~  174 (178)
                      .+....+|++++-+..+++..+.+|+++++||  |+.++|+
T Consensus        73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~  113 (174)
T PRK13695         73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP  113 (174)
T ss_pred             eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH
Confidence            34566799999999999999999999999999  5556553

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=97.68  E-value=2.7e-05  Score=60.91  Aligned_cols=51  Identities=16%  Similarity=0.075  Sum_probs=35.1

Q ss_pred             HHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH----hCCCCeEEeeCCCCCCCCCCC
Q psy860          121 IIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL----IGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       121 ~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL----~~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+.+.++.+.+...      .||||||..++||.-|    ...+.+++||||.++||+.++
T Consensus       122 ~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~  176 (220)
T PF02463_consen  122 DLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNR  176 (220)
T ss_dssp             HHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHH
T ss_pred             cccccccccccccc------ccccccccccccccccccccccccccccccccccccccccc
Confidence            34455555555432      8999999999998655    356789999999999998653

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.64  E-value=4.2e-05  Score=60.81  Aligned_cols=32  Identities=13%  Similarity=-0.054  Sum_probs=22.8

Q ss_pred             CCChHHHHHHHHHHHHh----CCCCeEEeeCCCCCC
Q psy860          141 RYSGGNKRKLSTAMALI----GDRDDGFQKLPFSSQ  172 (178)
Q Consensus       141 ~LSgGqkQRv~IAraL~----~~P~~lllDEPt~gL  172 (178)
                      .+|++..++-.+++.+-    .+|+++++||||+++
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l  130 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI  130 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence            36666655555544433    369999999999999

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.60  E-value=0.00014  Score=57.48  Aligned_cols=35  Identities=17%  Similarity=0.046  Sum_probs=29.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI   58 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~   58 (178)
                      ..+-+||++.++.++    +..|.|+|++||+       |+++.+.
T Consensus        17 ~~v~ndi~l~~~~~~----~~~itG~n~~gKs-------~~l~~i~   51 (218)
T cd03286          17 SFVPNDVDLGATSPR----ILVLTGPNMGGKS-------TLLRTVC   51 (218)
T ss_pred             CeEEeeeEEeecCCc----EEEEECCCCCchH-------HHHHHHH
Confidence            367899999999998    7789999999999       6665443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=97.59  E-value=2.9e-05  Score=67.27  Aligned_cols=72  Identities=14%  Similarity=0.155  Sum_probs=56.3

Q ss_pred             hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc---cccccH----
Q psy860            6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM---TNIMHL----   78 (178)
Q Consensus         6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g---~~~~~~----   78 (178)
                      |.+|+   .+++.++ .|..|+    ..+|+|++|+|||       ||++.+.++.+|+.|.+.+.|   +++..+    
T Consensus       149 l~TGi---~aID~L~-~I~~Gq----ri~I~G~SGsGKT-------TLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~  213 (450)
T PRK06002        149 LRTGV---RVIDIFT-PLCAGQ----RIGIFAGSGVGKS-------TLLAMLARADAFDTVVIALVGERGREVREFLEDT  213 (450)
T ss_pred             cCCCc---EEeeeec-eecCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence            44554   7888886 899999    7789999999999       999999999999999887754   554432    


Q ss_pred             -Hh-hccceEEecCCC
Q psy860           79 -FQ-YLSGIGYCPQFN   92 (178)
Q Consensus        79 -~~-~~~~ig~v~Q~~   92 (178)
                       .. .++.|++++|..
T Consensus       214 l~~~r~rtI~vV~qsd  229 (450)
T PRK06002        214 LADNLKKAVAVVATSD  229 (450)
T ss_pred             HHHhhCCeEEEEEcCC
Confidence             12 235799999974

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.57  E-value=5.4e-05  Score=58.05  Aligned_cols=83  Identities=14%  Similarity=0.074  Sum_probs=59.4

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC--
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN--   92 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~--   92 (178)
                      +.+=+.+.++.|+    ...|.|+||+|||       |+++.++++.+++.+.+.+.+...... ..+..+++++|..  
T Consensus        14 ~~~~l~~~v~~g~----~i~I~G~tGSGKT-------Tll~aL~~~i~~~~~~i~ied~~E~~~-~~~~~~~~~~~~~~~   81 (186)
T cd01130          14 QAAYLWLAVEARK----NILISGGTGSGKT-------TLLNALLAFIPPDERIITIEDTAELQL-PHPNWVRLVTRPGNV   81 (186)
T ss_pred             HHHHHHHHHhCCC----EEEEECCCCCCHH-------HHHHHHHhhcCCCCCEEEECCccccCC-CCCCEEEEEEecCCC
Confidence            4556677888888    6779999999999       999999999999999887755332222 1233466665543  


Q ss_pred             CCCCCCCHHHHHHHHHH
Q psy860           93 GINEHLTAQEMLECFSA  109 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~  109 (178)
                      ...+..+..+.+....+
T Consensus        82 ~~~~~~~~~~~l~~~lR   98 (186)
T cd01130          82 EGSGEVTMADLLRSALR   98 (186)
T ss_pred             CCCCccCHHHHHHHHhc
Confidence            34567888888876554

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.45  E-value=0.00012  Score=68.81  Aligned_cols=41  Identities=27%  Similarity=0.256  Sum_probs=33.7

Q ss_pred             cCcCCCCChHHHHHHHHHHH------HhCC--CCeEEeeCCCCCCCCCC
Q psy860          136 HRVSGRYSGGNKRKLSTAMA------LIGD--RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       136 ~~~~~~LSgGqkQRv~IAra------L~~~--P~~lllDEPt~gLD~~~  176 (178)
                      -+.+..||||++-.++||.+      +..+  -+.+|+||||..||+.+
T Consensus       810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~  858 (908)
T COG0419         810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEER  858 (908)
T ss_pred             ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHH
Confidence            36789999999996666654      4566  79999999999999865

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=97.43  E-value=7.1e-05  Score=57.79  Aligned_cols=40  Identities=20%  Similarity=0.079  Sum_probs=32.3

Q ss_pred             cCCCCChHHHHHHHHHHHHhCCC---CeEEeeCCCCCCCCCCC
Q psy860          138 VSGRYSGGNKRKLSTAMALIGDR---DDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       138 ~~~~LSgGqkQRv~IAraL~~~P---~~lllDEPt~gLD~~~~  177 (178)
                      ....+|.|+||.+.++.++...+   .++++|||-++|.|..+
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q  275 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQ  275 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHH
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHH
Confidence            45678999999999998888887   88999999999999653

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.39  E-value=0.00022  Score=59.04  Aligned_cols=41  Identities=12%  Similarity=0.136  Sum_probs=32.8

Q ss_pred             hhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc
Q psy860           19 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL   70 (178)
Q Consensus        19 v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~   70 (178)
                      +++.++.|+    ...|.|++|+|||       |+++.+++..+++.+.+.+
T Consensus       137 l~~~v~~~~----~ili~G~tGsGKT-------Tll~al~~~~~~~~~iv~i  177 (308)
T TIGR02788       137 LRLAIASRK----NIIISGGTGSGKT-------TFLKSLVDEIPKDERIITI  177 (308)
T ss_pred             HHHHhhCCC----EEEEECCCCCCHH-------HHHHHHHccCCccccEEEE
Confidence            556777777    5669999999999       9999999998877665543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.29  E-value=0.00064  Score=47.60  Aligned_cols=37  Identities=19%  Similarity=-0.057  Sum_probs=30.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860          139 SGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLY  175 (178)
Q Consensus       139 ~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~  175 (178)
                      ....++.+..+..+++|-...|+++++||+..-.+..
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~   94 (148)
T smart00382       58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAE   94 (148)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence            4457788888888888888889999999998876643

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.23  E-value=0.00027  Score=51.54  Aligned_cols=33  Identities=6%  Similarity=-0.183  Sum_probs=26.5

Q ss_pred             CCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860          140 GRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus       140 ~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                      ...+....++...+++...+|+++++|||++-+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~   98 (165)
T cd01120          66 DDPAAARLLSKAERLRERGGDDLIILDELTRLV   98 (165)
T ss_pred             CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHH
Confidence            344556667888999999999999999999543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=97.14  E-value=0.00018  Score=62.38  Aligned_cols=66  Identities=11%  Similarity=0.019  Sum_probs=54.1

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH----------hhcc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF----------QYLS   83 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~----------~~~~   83 (178)
                      .+++++ +.+..|+    ..+|+|++|+|||       |+++.+.+..+++.|.+.+.|+.-.+..          .+++
T Consensus       147 ~vid~l-~~i~~Gq----~i~I~G~sG~GKS-------tLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r  214 (438)
T PRK07721        147 RAIDSL-LTVGKGQ----RVGIFAGSGVGKS-------TLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKR  214 (438)
T ss_pred             hhhhee-eeecCCc----EEEEECCCCCCHH-------HHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcC
Confidence            689999 9999999    7789999999999       9999999999999999888665443222          2456


Q ss_pred             ceEEecCC
Q psy860           84 GIGYCPQF   91 (178)
Q Consensus        84 ~ig~v~Q~   91 (178)
                      .+.++.+.
T Consensus       215 ~v~vv~~~  222 (438)
T PRK07721        215 SIVVVATS  222 (438)
T ss_pred             eEEEEECC
Confidence            78888764

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.06  E-value=0.00059  Score=61.69  Aligned_cols=39  Identities=13%  Similarity=-0.008  Sum_probs=32.9

Q ss_pred             HHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          121 IIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       121 ~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      .+.+.++.+|+.+..+..+.++|||                +|++|| +..||+..
T Consensus       243 ~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~  281 (615)
T TIGR02903       243 GARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLL  281 (615)
T ss_pred             HHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHH
Confidence            4556688889988888899999999                999999 78999754

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.05  E-value=0.00058  Score=54.06  Aligned_cols=35  Identities=11%  Similarity=-0.096  Sum_probs=29.8

Q ss_pred             CCCChHHHHHHHHHHHHhC--CCCeEEeeCCCCCCCC
Q psy860          140 GRYSGGNKRKLSTAMALIG--DRDDGFQKLPFSSQNL  174 (178)
Q Consensus       140 ~~LSgGqkQRv~IAraL~~--~P~~lllDEPt~gLD~  174 (178)
                      ...|.++++.+..+..++.  +|+++++||||+.+|.
T Consensus        99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~  135 (234)
T PRK06067         99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY  135 (234)
T ss_pred             ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence            4567889999999999987  9999999999976654

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=96.95  E-value=0.00019  Score=54.75  Aligned_cols=65  Identities=8%  Similarity=-0.141  Sum_probs=44.7

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhc-cceEEecCCCCCCCCCCHHHHHHHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYL-SGIGYCPQFNGINEHLTAQEMLECF  107 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~-~~ig~v~Q~~~l~~~ltv~e~l~~~  107 (178)
                      ...+.|+||+|||       |+++.+.++..+    +++++.++......+ ...|+.+|+....+..++..+..+.
T Consensus         5 ~i~l~G~sGsGKS-------Tl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~   70 (176)
T PRK09825          5 SYILMGVSGSGKS-------LIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS   70 (176)
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence            5679999999999       999999888765    367887765543322 2356666665555666776666543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.93  E-value=0.0017  Score=50.28  Aligned_cols=19  Identities=21%  Similarity=-0.106  Sum_probs=17.4

Q ss_pred             HHHHHHhCCCCeEEeeCCC
Q psy860          151 STAMALIGDRDDGFQKLPF  169 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt  169 (178)
                      +++++|.++|+++++|||.
T Consensus        66 ~i~~aLr~~pd~ii~gEir   84 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR   84 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC
Confidence            4889999999999999996

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=96.88  E-value=0.00067  Score=58.65  Aligned_cols=74  Identities=12%  Similarity=0.014  Sum_probs=55.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhh--------ccc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQY--------LSG   84 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~--------~~~   84 (178)
                      ..+++++ +.+..|+    ..+|+|+||+|||       ||++.+.+...++.+.+...|+.-.+..++        ...
T Consensus       133 ~~~id~l-~~i~~Gq----~~~I~G~sG~GKS-------tLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~  200 (422)
T TIGR02546       133 VRAIDGL-LTCGEGQ----RIGIFAGAGVGKS-------TLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRK  200 (422)
T ss_pred             ceeehhh-ccccCCC----EEEEECCCCCChH-------HHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhcccccc
Confidence            3789999 9999999    7789999999999       999999999999988887755543333211        123


Q ss_pred             eEEecCCCCCCCCC
Q psy860           85 IGYCPQFNGINEHL   98 (178)
Q Consensus        85 ig~v~Q~~~l~~~l   98 (178)
                      .++++++....+.+
T Consensus       201 ~tvvv~~~s~~p~~  214 (422)
T TIGR02546       201 RSVLVVSTSDRPSL  214 (422)
T ss_pred             ceEEEeccccCCHH
Confidence            56677766555544

>PRK08149 ATP synthase SpaL; Validated

Probab=96.84  E-value=0.00042  Score=59.90  Aligned_cols=67  Identities=7%  Similarity=-0.020  Sum_probs=54.1

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc---ccccccccccccHH-h-----hccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA---AQNSLLMTNIMHLF-Q-----YLSG   84 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~---g~i~~~g~~~~~~~-~-----~~~~   84 (178)
                      .+++++ +.+.+|+    ..+|+|++|+|||       ||++.+.+...++.   |.|...++++..+. +     ..++
T Consensus       140 ~aid~l-l~i~~Gq----~i~I~G~sG~GKT-------TLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~  207 (428)
T PRK08149        140 RAIDGL-LTCGVGQ----RMGIFASAGCGKT-------SLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREK  207 (428)
T ss_pred             EEEeee-eeEecCC----EEEEECCCCCChh-------HHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccc
Confidence            789999 9999999    8889999999999       99999999888776   77778888776542 1     2256


Q ss_pred             eEEecCCC
Q psy860           85 IGYCPQFN   92 (178)
Q Consensus        85 ig~v~Q~~   92 (178)
                      +++|+...
T Consensus       208 ~~vV~~~s  215 (428)
T PRK08149        208 CVLVYATS  215 (428)
T ss_pred             eEEEEECC
Confidence            78887653

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=96.65  E-value=0.0005  Score=57.48  Aligned_cols=49  Identities=16%  Similarity=0.148  Sum_probs=43.0

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN   74 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~   74 (178)
                      .+++++ +.+..|+    ..+|+|+||+||+       ||++.+.+...++.+.+...|+.
T Consensus        58 ~aiD~l-~~i~~Gq----ri~I~G~sG~GKT-------tLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          58 RAIDGL-LTVGKGQ----RLGIFAGSGVGKS-------TLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             EEEeee-eEEcCCc----EEEEECCCCCChH-------HHHHHHhCCCCCCEEEEEEEecC
Confidence            689999 9999999    7789999999999       99999999999988877665543

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=96.49  E-value=0.00084  Score=58.14  Aligned_cols=52  Identities=12%  Similarity=0.066  Sum_probs=44.9

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH   77 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~   77 (178)
                      .+++++ +.+..|+    ..+|+|+||+||+       ||++.+.+...++.+.+.+.|+.-..
T Consensus       144 ~aID~l-l~i~~Gq----rigI~G~sG~GKS-------TLL~~I~~~~~~d~~vi~~iGeRgrE  195 (433)
T PRK07594        144 RAIDSV-ATCGEGQ----RVGIFSAPGVGKS-------TLLAMLCNAPDADSNVLVLIGERGRE  195 (433)
T ss_pred             eeeeee-eecCCCC----EEEEECCCCCCcc-------HHHHHhcCCCCCCEEEEEEECCCchH
Confidence            799999 9999999    7779999999999       99999999999998877666664433

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.48  E-value=0.0012  Score=54.40  Aligned_cols=71  Identities=15%  Similarity=0.147  Sum_probs=45.7

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCC--ccccccccccccc-ccHHhhccceEEecCCCCCCCCCCHHHHHHHHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--FQAAQNSLLMTNI-MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFS  108 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~~~g~i~~~g~~~-~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~  108 (178)
                      +.+|.|+||||||       |+.+.+.++..  |++|.+.+.+.+. ....+.++..++. |..+..+.+++.+.+.+..
T Consensus        64 IIGIaG~~GSGKS-------Tlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~  135 (290)
T TIGR00554        64 IISIAGSVAVGKS-------TTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLS  135 (290)
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHH
Confidence            6789999999999       88877777655  5666665444332 1112223335543 6667777888888777654


Q ss_pred             Hh
Q psy860          109 AL  110 (178)
Q Consensus       109 ~~  110 (178)
                      .+
T Consensus       136 ~L  137 (290)
T TIGR00554       136 DL  137 (290)
T ss_pred             HH
Confidence            44

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=96.44  E-value=0.00094  Score=58.02  Aligned_cols=67  Identities=12%  Similarity=0.029  Sum_probs=51.4

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc---ccccccccccccHHh-----hccce
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA---AQNSLLMTNIMHLFQ-----YLSGI   85 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~---g~i~~~g~~~~~~~~-----~~~~i   85 (178)
                      .+++.+ +.+..|+    ..+|+|+||+||+       |+++.+.+..+++.   |.|...++++....+     -.+..
T Consensus       164 raID~l-l~I~~Gq----ri~I~G~sG~GKT-------TLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~  231 (455)
T PRK07960        164 RAINAL-LTVGRGQ----RMGLFAGSGVGKS-------VLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRAR  231 (455)
T ss_pred             eeeeec-ccccCCc----EEEEECCCCCCcc-------HHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCce
Confidence            455555 8999999    7789999999999       99999999988885   777777887765321     12357


Q ss_pred             EEecCCC
Q psy860           86 GYCPQFN   92 (178)
Q Consensus        86 g~v~Q~~   92 (178)
                      ++|+|+.
T Consensus       232 tvVv~~~  238 (455)
T PRK07960        232 SVVIAAP  238 (455)
T ss_pred             EEEEEEC
Confidence            7788764

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=96.44  E-value=0.00084  Score=57.87  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=47.9

Q ss_pred             hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc
Q psy860            6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH   77 (178)
Q Consensus         6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~   77 (178)
                      |.+|+   .+++++ +.+..|+    ..+|+|++|+||+       ||++.+.+..+++.|.+.+.|+....
T Consensus       121 ~~tGi---~~iD~l-~~i~~Gq----ri~I~G~sG~GKT-------tLl~~i~~~~~~~~gvi~~~Ger~~e  177 (413)
T TIGR03497       121 LETGI---KAIDGL-LTIGKGQ----RVGIFAGSGVGKS-------TLLGMIARNAKADINVIALIGERGRE  177 (413)
T ss_pred             ccccc---eeeeeE-EEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCeEEEEEEccchHH
Confidence            34454   789999 9999999    7889999999999       99999999988998888777765543

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK01889 GTPase RsgA; Reviewed

Probab=96.37  E-value=0.0016  Score=55.16  Aligned_cols=67  Identities=13%  Similarity=0.045  Sum_probs=49.4

Q ss_pred             ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860           16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI   94 (178)
Q Consensus        16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l   94 (178)
                      ++.+...+..|+    ..+++|.+|+|||       ||+..+.+...++.|.+.+++...... ..++.+.+++|...+
T Consensus       185 l~~L~~~L~~g~----~~~lvG~sgvGKS-------tLin~L~g~~~~~~G~i~~~~~~g~~t-t~~~~l~~l~~~~~l  251 (356)
T PRK01889        185 LDVLAAWLSGGK----TVALLGSSGVGKS-------TLVNALLGEEVQKTGAVREDDSKGRHT-TTHRELHPLPSGGLL  251 (356)
T ss_pred             HHHHHHHhhcCC----EEEEECCCCccHH-------HHHHHHHHhcccceeeEEECCCCCcch-hhhccEEEecCCCee
Confidence            455566777777    6779999999999       999999999999999998876543222 223467788776433

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=96.33  E-value=0.0011  Score=57.63  Aligned_cols=50  Identities=16%  Similarity=0.129  Sum_probs=43.1

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI   75 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~   75 (178)
                      .+++++ +.+..|+    ..+|+|+||+|||       ||++.+.+...++.+.+...|..-
T Consensus       152 ~~iD~l-~~i~~Gq----~~~I~G~sG~GKS-------tLl~~I~~~~~~~~~vi~~iG~r~  201 (440)
T TIGR01026       152 RSIDGL-LTVGKGQ----RIGIFAGSGVGKS-------TLLGMIARNTEADVNVIALIGERG  201 (440)
T ss_pred             eeeeec-cccCCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCEEEEEEEeecc
Confidence            789999 9999999    7789999999999       999999999888887766655543

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>COG3910 Predicted ATPase [General function prediction only]

Probab=96.33  E-value=0.0039  Score=48.37  Aligned_cols=42  Identities=12%  Similarity=-0.062  Sum_probs=32.7

Q ss_pred             cccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          134 YRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       134 ~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +..+.....|.|+-=--.+.+.+- +--+.|||||-++|-|.-
T Consensus       122 ~~~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~R  163 (233)
T COG3910         122 YGGRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSR  163 (233)
T ss_pred             cCCcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHH
Confidence            344556788999987777777765 567999999999998853

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.31  E-value=0.0014  Score=52.17  Aligned_cols=17  Identities=29%  Similarity=0.147  Sum_probs=13.5

Q ss_pred             HHhCCCCeEEeeCCCCCC
Q psy860          155 ALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus       155 aL~~~P~~lllDEPt~gL  172 (178)
                      +...+|+++++| |++.+
T Consensus       107 ~~~~~~~lvviD-pl~~~  123 (239)
T cd01125         107 LLIRRIDLVVID-PLVSF  123 (239)
T ss_pred             HHhcCCCEEEEC-ChHHh
Confidence            446899999999 87653

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.29  E-value=0.0023  Score=55.30  Aligned_cols=27  Identities=19%  Similarity=0.090  Sum_probs=21.1

Q ss_pred             ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860           23 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF   60 (178)
Q Consensus        23 ~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~   60 (178)
                      +..|+    ..+++|+||+|||       |++..+.+.
T Consensus       188 ~~~g~----vi~lvGpnG~GKT-------TtlakLA~~  214 (420)
T PRK14721        188 IEQGG----VYALIGPTGVGKT-------TTTAKLAAR  214 (420)
T ss_pred             cCCCc----EEEEECCCCCCHH-------HHHHHHHHH
Confidence            35566    7789999999999       887777653

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.26  E-value=0.00066  Score=57.50  Aligned_cols=112  Identities=12%  Similarity=0.013  Sum_probs=58.3

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCC--cccc-ccccccccccc-HHhhccceEEecCCCCCCCCCCHHHHHHHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--FQAA-QNSLLMTNIMH-LFQYLSGIGYCPQFNGINEHLTAQEMLECF  107 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~~~g-~i~~~g~~~~~-~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~  107 (178)
                      ...+.|++|+|||       |+++.+++...  +..+ .+.....++.- ....+...++++|...--...+..+.+...
T Consensus       136 lilI~GpTGSGKT-------TtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~a  208 (358)
T TIGR02524       136 IVFITGATGSGKS-------TLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNA  208 (358)
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHH
Confidence            5779999999999       99998888753  2233 44333333321 222333457777753211112333333222


Q ss_pred             HHhc----CCCCCChhHHHHHHHHH-------------cCCCccccCcCCCCChHHHHHH
Q psy860          108 SALR----GIPGVKSGPIIDYWIDL-------------LGLTEYRHRVSGRYSGGNKRKL  150 (178)
Q Consensus       108 ~~~~----~~~~~~~~~~~~~~l~~-------------~~L~~~~~~~~~~LSgGqkQRv  150 (178)
                      .+..    .+....+.+.+..+++.             .+..+...+....+|+|+|--+
T Consensus       209 LR~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~  268 (358)
T TIGR02524       209 LRRKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR  268 (358)
T ss_pred             hccCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence            2111    01111233445556655             2333455677788999988644

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=96.26  E-value=0.0053  Score=44.60  Aligned_cols=53  Identities=15%  Similarity=0.022  Sum_probs=34.3

Q ss_pred             HHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHH-----hCCCCeEEeeCCCCCCCCCC
Q psy860          120 PIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMAL-----IGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       120 ~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL-----~~~P~~lllDEPt~gLD~~~  176 (178)
                      ..+.+++..++.. -....++..+|++++++.......     ...|+++    |+|++|+.+
T Consensus       100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~  158 (170)
T cd01876         100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQG  158 (170)
T ss_pred             HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCC
Confidence            3455667766654 234455777899988877655542     3445555    999999865

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.22  E-value=0.0036  Score=56.96  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=28.5

Q ss_pred             cCCCCChHHHHHHHHHHH--Hh----CCCCeEEeeCCCCCCCCCCC
Q psy860          138 VSGRYSGGNKRKLSTAMA--LI----GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       138 ~~~~LSgGqkQRv~IAra--L~----~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+..|||||+|-+++|..  |+    ....+ ++|||++.||+..+
T Consensus       548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r  592 (650)
T TIGR03185       548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHR  592 (650)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHH
Confidence            467899999998766653  32    23445 56999999998654

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.20  E-value=0.0033  Score=49.72  Aligned_cols=69  Identities=14%  Similarity=0.136  Sum_probs=45.5

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc----cccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN----SLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECF  107 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i----~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~  107 (178)
                      +.+|.|+||+|||       |+.+.+.+..+++.|.+    .+++-..  ....+...+++++. ..+..+++.+...+.
T Consensus        35 iigi~G~~GsGKT-------Tl~~~L~~~l~~~~g~~~v~i~~D~~~~--~~~~~~~~g~~~~~-~~~~~~d~~~~~~~l  104 (229)
T PRK09270         35 IVGIAGPPGAGKS-------TLAEFLEALLQQDGELPAIQVPMDGFHL--DNAVLDAHGLRPRK-GAPETFDVAGLAALL  104 (229)
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHhhhccCCceEEEecccccC--CHHHHHhccccccc-CCCCCCCHHHHHHHH
Confidence            6789999999999       99999999998888873    3333222  12223346777653 334566777666554


Q ss_pred             HHh
Q psy860          108 SAL  110 (178)
Q Consensus       108 ~~~  110 (178)
                      ..+
T Consensus       105 ~~l  107 (229)
T PRK09270        105 RRL  107 (229)
T ss_pred             HHH
Confidence            433

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.17  E-value=0.0017  Score=51.21  Aligned_cols=24  Identities=8%  Similarity=-0.051  Sum_probs=19.2

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPF   63 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~   63 (178)
                      .+|.|+||||||       |+.+.+.+.+.+
T Consensus         2 igI~G~sGSGKT-------Tla~~L~~~l~~   25 (220)
T cd02025           2 IGIAGSVAVGKS-------TTARVLQALLSR   25 (220)
T ss_pred             EEeeCCCCCCHH-------HHHHHHHHHHhh
Confidence            468899999999       888877776543

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK09099 type III secretion system ATPase; Provisional

Probab=96.16  E-value=0.0014  Score=56.88  Aligned_cols=51  Identities=16%  Similarity=0.113  Sum_probs=45.2

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM   76 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~   76 (178)
                      .+++++ +.+.+|+    ..+|+|+||+|||       |+++.+.+...++.+.+.+.|+.-.
T Consensus       152 ~~ID~l-~~i~~Gq----~~~I~G~sG~GKT-------tLl~~ia~~~~~d~~vi~~iGer~~  202 (441)
T PRK09099        152 RIVDGL-MTLGEGQ----RMGIFAPAGVGKS-------TLMGMFARGTQCDVNVIALIGERGR  202 (441)
T ss_pred             eeccce-eeecCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCeEEEEEEccChH
Confidence            789999 9999999    7789999999999       9999999999899888887775443

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.11  E-value=0.0022  Score=53.44  Aligned_cols=69  Identities=16%  Similarity=0.134  Sum_probs=49.6

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HH--hhccceEEecCCCCCCCCCCHHHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LF--QYLSGIGYCPQFNGINEHLTAQEM  103 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~--~~~~~ig~v~Q~~~l~~~ltv~e~  103 (178)
                      ..+++|+||+|||       |++..+.+...+..+.+.+.+.+...      ..  ..+.++.+++|.....+..++.++
T Consensus       116 vi~lvGpnGsGKT-------Tt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~  188 (318)
T PRK10416        116 VILVVGVNGVGKT-------TTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA  188 (318)
T ss_pred             EEEEECCCCCcHH-------HHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence            6779999999999       88888888877777788776665422      21  234579999987655565566777


Q ss_pred             HHHH
Q psy860          104 LECF  107 (178)
Q Consensus       104 l~~~  107 (178)
                      +...
T Consensus       189 l~~~  192 (318)
T PRK10416        189 IQAA  192 (318)
T ss_pred             HHHH
Confidence            6543

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.10  E-value=0.006  Score=51.97  Aligned_cols=73  Identities=16%  Similarity=0.199  Sum_probs=48.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .+++++.++.+..|+    ..+++||+|+|||       |++..+........|.               +.++++..+.
T Consensus       124 l~~~~~~~~~~~~g~----ii~lvGptGvGKT-------TtiakLA~~~~~~~G~---------------~~V~lit~D~  177 (374)
T PRK14722        124 LPVLDSEDALMERGG----VFALMGPTGVGKT-------TTTAKLAARCVMRFGA---------------SKVALLTTDS  177 (374)
T ss_pred             chhhcCCCccccCCc----EEEEECCCCCCHH-------HHHHHHHHHHHHhcCC---------------CeEEEEeccc
Confidence            356778888899998    6779999999999       7777665432111111               2577777654


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIP  114 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~  114 (178)
                      .   .....|.+..++...+.+
T Consensus       178 ~---R~ga~EqL~~~a~~~gv~  196 (374)
T PRK14722        178 Y---RIGGHEQLRIFGKILGVP  196 (374)
T ss_pred             c---cccHHHHHHHHHHHcCCc
Confidence            2   336677887776665544

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=96.01  E-value=0.0018  Score=55.86  Aligned_cols=53  Identities=13%  Similarity=-0.004  Sum_probs=44.6

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL   78 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~   78 (178)
                      .+++ .+|.+..|+    ..+|+|+||+||+       ||++.+++..+++.|.+.+.|+.....
T Consensus       129 ~aiD-~~~~i~~Gq----~i~I~G~sG~GKT-------tLl~~I~~~~~~~~gvi~~iGer~~ev  181 (418)
T TIGR03498       129 RVID-TFLPLCRGQ----RLGIFAGSGVGKS-------TLLSMLARNTDADVVVIALVGERGREV  181 (418)
T ss_pred             EEEe-eeccccCCc----EEEEECCCCCChH-------HHHHHHhCCCCCCEEEEEEEeeechHH
Confidence            5665 699999999    7779999999999       999999999999999887777754443

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=95.96  E-value=0.0049  Score=50.56  Aligned_cols=71  Identities=18%  Similarity=0.193  Sum_probs=49.6

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc---cccccccHH-hhc-cceEEecCCCCC---C-CCCCHHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL---LMTNIMHLF-QYL-SGIGYCPQFNGI---N-EHLTAQE  102 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~---~g~~~~~~~-~~~-~~ig~v~Q~~~l---~-~~ltv~e  102 (178)
                      ..+++|+||+|||       ||++.+.+...++.|.+..   .|...+... .++ ...+++.+.|++   . ..++..+
T Consensus       163 ~~~~~G~sg~GKS-------Tlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~  235 (287)
T cd01854         163 TSVLVGQSGVGKS-------TLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEE  235 (287)
T ss_pred             eEEEECCCCCCHH-------HHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHH
Confidence            5789999999999       9999999988888888754   222222111 122 236789999876   3 4678888


Q ss_pred             HHHHHHH
Q psy860          103 MLECFSA  109 (178)
Q Consensus       103 ~l~~~~~  109 (178)
                      ...+|..
T Consensus       236 ~~~~f~~  242 (287)
T cd01854         236 LAHYFPE  242 (287)
T ss_pred             HHHHhHH
Confidence            7776554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=95.94  E-value=0.0016  Score=56.07  Aligned_cols=50  Identities=18%  Similarity=0.196  Sum_probs=42.6

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI   75 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~   75 (178)
                      .+++.+ +.+..|+    ..+|+|+||+||+       ||+..+.+...++.+.+...|+.-
T Consensus       126 ~~id~l-~~i~~Gq----~~~I~G~sG~GKT-------tLl~~I~~~~~~~~~vi~~iGer~  175 (411)
T TIGR03496       126 RAINGL-LTVGRGQ----RMGIFAGSGVGKS-------TLLGMMARYTEADVVVVGLIGERG  175 (411)
T ss_pred             Eeecce-EEEecCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCEEEEEEEecCh
Confidence            788888 9999999    7789999999999       999999999888877765555543

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK00098 GTPase RsgA; Reviewed

Probab=95.82  E-value=0.009  Score=49.27  Aligned_cols=70  Identities=21%  Similarity=0.245  Sum_probs=48.2

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc---cccccccHHhh--ccceEEecCCCCCC----CCCCHHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL---LMTNIMHLFQY--LSGIGYCPQFNGIN----EHLTAQE  102 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~---~g~~~~~~~~~--~~~ig~v~Q~~~l~----~~ltv~e  102 (178)
                      ..+++|+||+|||       ||++.+.+...+..|.+..   .|+..+...++  ....+++.+.|++.    ..++..+
T Consensus       166 ~~~~~G~sgvGKS-------tlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~  238 (298)
T PRK00098        166 VTVLAGQSGVGKS-------TLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEE  238 (298)
T ss_pred             eEEEECCCCCCHH-------HHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHH
Confidence            4679999999999       9999999888888888754   33333221121  12467888888876    4577776


Q ss_pred             HHHHHH
Q psy860          103 MLECFS  108 (178)
Q Consensus       103 ~l~~~~  108 (178)
                      ...++.
T Consensus       239 ~~~~f~  244 (298)
T PRK00098        239 LEHYFP  244 (298)
T ss_pred             HHHHHH
Confidence            655544

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.78  E-value=0.011  Score=54.66  Aligned_cols=38  Identities=18%  Similarity=0.121  Sum_probs=30.2

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP   62 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~   62 (178)
                      ++++++++.+..|+    +.+++||||+|||       |.+..+.+...
T Consensus       173 ~il~~~~~~~~~g~----Vi~lVGpnGvGKT-------TTiaKLA~~~~  210 (767)
T PRK14723        173 PVLRDEDALLAQGG----VLALVGPTGVGKT-------TTTAKLAARCV  210 (767)
T ss_pred             hhccCCCcccCCCe----EEEEECCCCCcHH-------HHHHHHHhhHH
Confidence            46778888888777    7779999999999       77777776543

>PRK09862 putative ATP-dependent protease; Provisional

Probab=95.72  E-value=0.0021  Score=56.79  Aligned_cols=58  Identities=19%  Similarity=0.118  Sum_probs=47.4

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI   75 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~   75 (178)
                      .+.+|...+++++++.+..|+    ...++|++|+||+       ++++.+.++.+|..|+..++...+
T Consensus       191 ~~v~Gq~~~~~al~laa~~G~----~llliG~~GsGKT-------tLak~L~gllpp~~g~e~le~~~i  248 (506)
T PRK09862        191 SDVIGQEQGKRGLEITAAGGH----NLLLIGPPGTGKT-------MLASRINGLLPDLSNEEALESAAI  248 (506)
T ss_pred             EEEECcHHHHhhhheeccCCc----EEEEECCCCCcHH-------HHHHHHhccCCCCCCcEEEecchh
Confidence            344455668889999999998    5669999999999       999999999999988876665544

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=95.60  E-value=3.1e-05  Score=68.00  Aligned_cols=125  Identities=14%  Similarity=0.107  Sum_probs=64.1

Q ss_pred             ccccch-hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh--ccCCcccccccccccc-cccHHhhccceEEec
Q psy860           14 PQFNGI-NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI--RFSPFQAAQNSLLMTN-IMHLFQYLSGIGYCP   89 (178)
Q Consensus        14 ~~~~~v-~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~--~~~~~~~g~i~~~g~~-~~~~~~~~~~ig~v~   89 (178)
                      +-||.+ +=-++.|.    ...|.|++|+|||       |+...++  |...+....+++..++ ..++.+..+.+|+-+
T Consensus         8 ~gLD~il~GGlp~g~----~~Li~G~pGsGKT-------~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~   76 (484)
T TIGR02655         8 EGFDDISHGGLPIGR----STLVSGTSGTGKT-------LFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDL   76 (484)
T ss_pred             hhHHHhcCCCCCCCe----EEEEEcCCCCCHH-------HHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCH
Confidence            556665 33677888    6779999999999       5555442  3333222223333322 222333333445433


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHH--HHHhCCCCe
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTA--MALIGDRDD  162 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IA--raL~~~P~~  162 (178)
                      ++..-...+.+         ....+    ......+++.+++.+..++...++|+|++|||.|+  .++...|+.
T Consensus        77 ~~~~~~g~l~~---------~~~~~----~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~  138 (484)
T TIGR02655        77 QKLVDEGKLFI---------LDASP----DPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDA  138 (484)
T ss_pred             HHHhhcCceEE---------EecCc----hhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCc
Confidence            32100000000         00000    00111234456666677777888899999999998  566565543

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=95.51  E-value=0.0035  Score=54.54  Aligned_cols=52  Identities=19%  Similarity=0.149  Sum_probs=41.0

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc---cccccccccccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA---AQNSLLMTNIMH   77 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~---g~i~~~g~~~~~   77 (178)
                      .+++++ |.+..|+    ..+|+|+||+|||       ||++.+.+...++.   |.+...+.++..
T Consensus       157 ~aID~l-~~I~~Gq----rigI~G~sG~GKS-------TLl~~I~g~~~~dv~V~g~Ig~rg~ev~~  211 (451)
T PRK05688        157 RSINGL-LTVGRGQ----RLGLFAGTGVGKS-------VLLGMMTRFTEADIIVVGLIGERGREVKE  211 (451)
T ss_pred             eeecce-EEecCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCEEEEEEeCcCcHhHHH
Confidence            789999 9999999    7789999999999       88999988877763   334444444443

>PLN02318 phosphoribulokinase/uridine kinase

Probab=95.36  E-value=0.0061  Score=54.79  Aligned_cols=63  Identities=13%  Similarity=-0.061  Sum_probs=47.5

Q ss_pred             HhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHH
Q psy860           31 CFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLEC  106 (178)
Q Consensus        31 ~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~  106 (178)
                      .+.+|.|+||||||       |+.+.+.+.. |..+.+.+|+....     .+.+.+.+|++..++..++.+++..
T Consensus        66 iIIGIaGpSGSGKT-------TLAk~LaglL-p~vgvIsmDdy~~~-----~~~i~~nfD~P~a~D~d~L~enL~~  128 (656)
T PLN02318         66 ILVGVAGPSGAGKT-------VFTEKVLNFM-PSIAVISMDNYNDS-----SRIIDGNFDDPRLTDYDTLLDNIHD  128 (656)
T ss_pred             EEEEEECCCCCcHH-------HHHHHHHhhC-CCcEEEEEcceecc-----hhhhCccCCChhhcchhHHHHHHHH
Confidence            36889999999999       8888888876 46788888776321     1246678888887777788887754

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=95.35  E-value=0.0052  Score=46.14  Aligned_cols=61  Identities=10%  Similarity=-0.102  Sum_probs=40.3

Q ss_pred             hCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhc-cceEEecCCCCCCCCCCHHHHHHHH
Q psy860           36 RGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYL-SGIGYCPQFNGINEHLTAQEMLECF  107 (178)
Q Consensus        36 ~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~-~~ig~v~Q~~~l~~~ltv~e~l~~~  107 (178)
                      +|++|||||       |+.+.+.+..    |.+.+++.........+ ...|+.+|+....+.+++.++..+.
T Consensus         1 ~G~sGsGKS-------Tla~~la~~l----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   62 (163)
T PRK11545          1 MGVSGSGKS-------AVASEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFA   62 (163)
T ss_pred             CCCCCCcHH-------HHHHHHHHHh----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHH
Confidence            599999999       8877777655    44567775443222222 3467788876666677777777664

>TIGR00606 rad50 rad50

Probab=95.30  E-value=0.0089  Score=58.54  Aligned_cols=53  Identities=9%  Similarity=-0.020  Sum_probs=38.3

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhh----hccCCcc-cccccccccccccHHhhccceEEecCC
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSA----IRFSPFQ-AAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~----~~~~~~~-~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      +.+|+|+||+|||       |++.++    .|..+|. .|.+++++..+......+..|.++|++
T Consensus        30 ~~~I~G~NGaGKT-------Til~ai~~al~G~~~~~~~g~~~i~~~~~~~~~~~~a~V~l~F~~   87 (1311)
T TIGR00606        30 LTILVGPNGAGKT-------TIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRD   87 (1311)
T ss_pred             eEEEECCCCCCHH-------HHHHHHHHHhcCCCCCCCCCceEecCCCcCccHhhhheeEEEEEc
Confidence            6789999999999       777766    5777775 677777766555444445557777754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=95.29  E-value=0.0044  Score=53.74  Aligned_cols=52  Identities=12%  Similarity=0.056  Sum_probs=43.8

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH   77 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~   77 (178)
                      .+++++ +.+..|+    ..+|+|+||+|||       |+++.+.+...++.+.+...|+...+
T Consensus       146 ~aid~l-~~i~~Gq----~~~i~G~sG~GKS-------tLl~~i~~~~~~~v~vi~~iGergre  197 (434)
T PRK08472        146 KSIDGL-LTCGKGQ----KLGIFAGSGVGKS-------TLMGMIVKGCLAPIKVVALIGERGRE  197 (434)
T ss_pred             HHhhhc-ceecCCC----EEEEECCCCCCHH-------HHHHHHhhccCCCEEEEEeeCccchh
Confidence            689999 9999999    7779999999999       88888888877777887777766544

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=95.23  E-value=0.00032  Score=55.22  Aligned_cols=27  Identities=19%  Similarity=0.329  Sum_probs=21.5

Q ss_pred             ccccch-hhhccHHHHHHHhhhhhCCCCCCcc
Q psy860           14 PQFNGI-NEHLTAQEMLECFSALRGIPGVKSG   44 (178)
Q Consensus        14 ~~~~~v-~~~~~~g~~~~~~~~i~G~~g~gk~   44 (178)
                      +-||.+ .--+++|+    +..|.|++|+|||
T Consensus         7 ~~LD~~l~GGi~~G~----~~~i~G~~G~GKT   34 (229)
T TIGR03881         7 EGLDKLLEGGIPRGF----FVAVTGEPGTGKT   34 (229)
T ss_pred             hhHHHhhcCCCcCCe----EEEEECCCCCChH
Confidence            456664 34688898    7779999999999

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=95.16  E-value=0.21  Score=37.67  Aligned_cols=52  Identities=19%  Similarity=0.215  Sum_probs=35.8

Q ss_pred             HHHHHHHHcCCC-ccccCcCCCCChHHHHHHH--HHHHHhC-CCCeEEeeCCCCCCCCCC
Q psy860          121 IIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLS--TAMALIG-DRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       121 ~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~--IAraL~~-~P~~lllDEPt~gLD~~~  176 (178)
                      .+.++++..++. -..-.++..+|+|++|++.  +++.+-. ++++    .|+|++|+.+
T Consensus       126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~g  181 (196)
T PRK00454        126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQG  181 (196)
T ss_pred             HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCC
Confidence            345566666665 4445677889999999987  6666644 2333    3999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	8e-18
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	1e-05
1sgw_A	214	Putative ABC transporter; structural genomics, P p	1e-15
1sgw_A	214	Putative ABC transporter; structural genomics, P p	5e-05

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 77.2 bits (191), Expect = 8e-18
 Identities = 18/75 (24%), Positives = 30/75 (40%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           I Y P+  G   ++   E L   +        +   +++   ++ GL E        YS 
Sbjct: 90  ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 149

Query: 145 GNKRKLSTAMALIGD 159
           G  RKL  A AL+ +
Sbjct: 150 GMVRKLLIARALMVN 164

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 7/46 (15%), Positives = 17/46 (36%)

Query: 10  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 55
           I Y P+  G   ++   E L   +        +   +++   ++ G
Sbjct: 90  ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG 135

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 70.6 bits (174), Expect = 1e-15
 Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           I + P+   +   ++ ++ L+  ++L G+   K+   I   ++ + + + + ++ G  S 
Sbjct: 80  IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN--EIMDALESVEVLDLKKKL-GELSQ 136

Query: 145 GNKRKLSTAMALIGD 159
           G  R++  A  L+ +
Sbjct: 137 GTIRRVQLASTLLVN 151

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 7/46 (15%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 10  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 55
           I + P+   +   ++ ++ L+  ++L G+   K+   I   ++ + 
Sbjct: 80  IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN--EIMDALESVE 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.98
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.97
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.97
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.97
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.97
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.97
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.97
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.96
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.94
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.93
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.91
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.89
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.88
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.88
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.88
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.88
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.87
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.84
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.84
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.84
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.82
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.81
2og2_A	359	Putative signal recognition particle receptor; nuc	99.8
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.79
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.79
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.77
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.75
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.74
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.74
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.69
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.67
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.64
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.63
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.61
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.58
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.57
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.56
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.52
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.51
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.5
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.49
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.48
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.48
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.45
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.45
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.44
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.43
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.43
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.42
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.41
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.4
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.39
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.38
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.36
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.35
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.35
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.33
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.31
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.31
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.31
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.25
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.24
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.23
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.23
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.22
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.2
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.2
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.18
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.18
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.17
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.15
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.14
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.11
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.1
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.1
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.09
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.06
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.05
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.04
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.03
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.03
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.02
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.02
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.02
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.93
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.93
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.88
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.87
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.84
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.77
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.73
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.72
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.68
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.56
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.48
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.48
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.48
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.48
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.41
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.39
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.34
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.28
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.26
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.17
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.05
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.03
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.92
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.91
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.77
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.72
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.71
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.68
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.66
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.51
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.5
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.48
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.45
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.38
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.34
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.32
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.23
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.2
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.13
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.86
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.85
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.85
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.77
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.76
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.76
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.71
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.62
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.36
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.15
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.66
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.44
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.43
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.34
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.31
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	94.6
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	94.37
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.33
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.11
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.01
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	93.83
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	93.8
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	93.75
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.48
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	93.37
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	92.96
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	92.84
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	92.66
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	91.83
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	91.34
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	91.04
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	90.95
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	90.89
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	90.74
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	90.65
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	89.85
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	89.82
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	89.77
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	89.58
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	89.23
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	89.18
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	87.97
3ice_A	422	Transcription termination factor RHO; transcriptio	87.27
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	87.26
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	86.82
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	86.04
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	85.97
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	85.31
2eyu_A	261	Twitching motility protein PILT; pilus retraction	85.19
1b9m_A	265	Protein (mode); DNA-binding, gene regulation, wing	85.15
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	85.08
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	83.3
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	83.03
2ewv_A	372	Twitching motility protein PILT; pilus retraction	82.53
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	81.7
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	81.28
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	80.79
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	80.3

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=2e-45  Score=307.48  Aligned_cols=163  Identities=16%  Similarity=0.130  Sum_probs=145.0

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----   78 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----   78 (178)
                      +.|..+.+..++|+||||+|++||    +.+|+|+||||||       ||+++++|+.+|++|+|.++|+++...     
T Consensus        32 ~~y~~~~~~~~aL~~vsl~i~~Ge----i~~IiGpnGaGKS-------TLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~  100 (366)
T 3tui_C           32 KVFHQGTRTIQALNNVSLHVPAGQ----IYGVIGASGAGKS-------TLIRCVNLLERPTEGSVLVDGQELTTLSESEL  100 (366)
T ss_dssp             EEEECSSSEEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred             EEeCCCCCCeEEEEeeEEEEcCCC----EEEEEcCCCchHH-------HHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence            345443334579999999999999    8889999999999       999999999999999999999988642     


Q ss_pred             HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           79 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        79 ~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .+.|++||||||++.+++.+||+||+.++....+.+..+.++++.++++.+||.+..++++.+|||||||||+|||||++
T Consensus       101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~  180 (366)
T 3tui_C          101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS  180 (366)
T ss_dssp             HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred             HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            34577899999999999999999999998777666555667789999999999999999999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++||||||||||||.++
T Consensus       181 ~P~lLLlDEPTs~LD~~~~  199 (366)
T 3tui_C          181 NPKVLLCDQATSALDPATT  199 (366)
T ss_dssp             CCSEEEEESTTTTSCHHHH
T ss_pred             CCCEEEEECCCccCCHHHH
Confidence            9999999999999999753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=3e-45  Score=306.01  Aligned_cols=157  Identities=22%  Similarity=0.200  Sum_probs=141.2

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc----ccHHhhccce
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI----MHLFQYLSGI   85 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~----~~~~~~~~~i   85 (178)
                      +|..++|+||||+|++||    +.+|+||||||||       ||++++.|+.+|++|+|.++|+++    ......++.|
T Consensus        14 y~~~~~L~~vsl~i~~Ge----~~~llGpsGsGKS-------TLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i   82 (359)
T 3fvq_A           14 FQNTPVLNDISLSLDPGE----ILFIIGASGCGKT-------TLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL   82 (359)
T ss_dssp             ETTEEEEEEEEEEECTTC----EEEEEESTTSSHH-------HHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred             ECCEEEEEeeEEEEcCCC----EEEEECCCCchHH-------HHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence            355689999999999999    8899999999999       999999999999999999999988    3334456789


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           86 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      |||||++.+++++||+||+.++....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL  162 (359)
T 3fvq_A           83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL  162 (359)
T ss_dssp             EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999876555555555667899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCC
Q psy860          166 KLPFSSQNLYNT  177 (178)
Q Consensus       166 DEPt~gLD~~~~  177 (178)
                      |||||+||+..+
T Consensus       163 DEPts~LD~~~r  174 (359)
T 3fvq_A          163 DEPFSALDEQLR  174 (359)
T ss_dssp             ESTTTTSCHHHH
T ss_pred             eCCcccCCHHHH
Confidence            999999998753

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=7.4e-45  Score=305.62  Aligned_cols=156  Identities=17%  Similarity=0.171  Sum_probs=143.8

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++......+++||||||
T Consensus        14 g~~~~L~~vsl~i~~Ge----~~~llGpsGsGKS-------TLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ   82 (381)
T 3rlf_A           14 GEVVVSKDINLDIHEGE----FVVFVGPSGCGKS-------TLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ   82 (381)
T ss_dssp             TTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred             CCEEEEeeeEEEECCCC----EEEEEcCCCchHH-------HHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence            55689999999999999    8889999999999       999999999999999999999998766555678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++++||+||+.++....+.++.+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus        83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts  162 (381)
T 3rlf_A           83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS  162 (381)
T ss_dssp             TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred             CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            99999999999999998777766655667789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      +||+..+
T Consensus       163 ~LD~~~~  169 (381)
T 3rlf_A          163 NLDAALR  169 (381)
T ss_dssp             TSCHHHH
T ss_pred             CCCHHHH
Confidence            9998653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=2e-44  Score=285.85  Aligned_cols=163  Identities=17%  Similarity=0.140  Sum_probs=137.0

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----   78 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----   78 (178)
                      |.|..+....++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++...     
T Consensus         9 ~~y~~~~~~~~~L~~isl~i~~Ge----~~~iiG~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~   77 (235)
T 3tif_A            9 KTYKMGEEIIYALKNVNLNIKEGE----FVSIMGPSGSGKS-------TMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL   77 (235)
T ss_dssp             EEEEETTEEEEEEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred             EEeCCCCcceeeEEeeeEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCceEEEECCEEcccCCHHHH
Confidence            345433223469999999999999    8889999999999       999999999999999999999987542     


Q ss_pred             Hhh-ccceEEecCCCCCCCCCCHHHHHHHHHHhc---CCCCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHH
Q psy860           79 FQY-LSGIGYCPQFNGINEHLTAQEMLECFSALR---GIPGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTA  153 (178)
Q Consensus        79 ~~~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IA  153 (178)
                      .+. ++.||||||++.+++.+||+||+.+.....   .....+..+++.++++.+++.+. .++++.+|||||||||+||
T Consensus        78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA  157 (235)
T 3tif_A           78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA  157 (235)
T ss_dssp             HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence            122 346999999999999999999999866543   22223345678889999999875 5999999999999999999


Q ss_pred             HHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          154 MALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       154 raL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |||+++|++|||||||+|||+.++
T Consensus       158 ral~~~p~llllDEPts~LD~~~~  181 (235)
T 3tif_A          158 RALANNPPIILADQPTWALDSKTG  181 (235)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHH
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHH
Confidence            999999999999999999998753

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3.2e-44  Score=290.74  Aligned_cols=153  Identities=14%  Similarity=0.097  Sum_probs=136.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--c--HHhhccceEEec
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--H--LFQYLSGIGYCP   89 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~--~~~~~~~ig~v~   89 (178)
                      ++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++.  .  ..++++.|||||
T Consensus        22 ~~L~~isl~i~~Ge----~~~iiGpnGsGKS-------TLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~   90 (275)
T 3gfo_A           22 HALKGINMNIKRGE----VTAILGGNGVGKS-------TLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVF   90 (275)
T ss_dssp             EEEEEEEEEEETTS----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEEC
T ss_pred             eEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEE
Confidence            59999999999999    8889999999999       9999999999999999999999873  2  345678899999


Q ss_pred             CCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           90 QFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        90 Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      |++. .++.+||+||+.+.....+.+..+..++++++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus        91 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEP  170 (275)
T 3gfo_A           91 QDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP  170 (275)
T ss_dssp             SSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred             cCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            9973 445799999999987666555555567899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+||||.++
T Consensus       171 ts~LD~~~~  179 (275)
T 3gfo_A          171 TAGLDPMGV  179 (275)
T ss_dssp             TTTCCHHHH
T ss_pred             cccCCHHHH
Confidence            999999753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=5.1e-44  Score=298.43  Aligned_cols=156  Identities=15%  Similarity=0.172  Sum_probs=141.0

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++......++.||||||
T Consensus        26 g~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q   94 (355)
T 1z47_A           26 GGARSVRGVSFQIREGE----MVGLLGPSGSGKT-------TILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQ   94 (355)
T ss_dssp             TSTTCEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECG
T ss_pred             CCCEEEeeeEEEECCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEec
Confidence            44579999999999999    8889999999999       999999999999999999999988665455678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++++||+||+.++....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus        95 ~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s  174 (355)
T 1z47_A           95 NYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA  174 (355)
T ss_dssp             GGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTC
T ss_pred             CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            99999999999999997766554444456788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      +||+..+
T Consensus       175 ~LD~~~r  181 (355)
T 1z47_A          175 AIDTQIR  181 (355)
T ss_dssp             CSSHHHH
T ss_pred             cCCHHHH
Confidence            9998754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=9.4e-44  Score=297.61  Aligned_cols=156  Identities=19%  Similarity=0.200  Sum_probs=140.6

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++......++.||||||
T Consensus        14 ~~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q   82 (362)
T 2it1_A           14 GNFTALNNINLKIKDGE----FMALLGPSGSGKS-------TLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ   82 (362)
T ss_dssp             SSSEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred             CCEEEEEeeEEEECCCC----EEEEECCCCchHH-------HHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence            44579999999999999    8889999999999       999999999999999999999988654444578999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++++||+||+.+.....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus        83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s  162 (362)
T 2it1_A           83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS  162 (362)
T ss_dssp             TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred             CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence            99999999999999997666554444456678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      +||+..+
T Consensus       163 ~LD~~~r  169 (362)
T 2it1_A          163 NLDALLR  169 (362)
T ss_dssp             GSCHHHH
T ss_pred             cCCHHHH
Confidence            9998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.9e-43  Score=278.37  Aligned_cols=154  Identities=21%  Similarity=0.182  Sum_probs=135.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hhhc-cceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYL-SGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~-~~ig   86 (178)
                      .++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++...     .+++ +.++
T Consensus        17 ~~~l~~vsl~i~~Ge----~~~iiG~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   85 (224)
T 2pcj_A           17 YEILKGISLSVKKGE----FVSIIGASGSGKS-------TLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLG   85 (224)
T ss_dssp             EEEEEEEEEEEETTC----EEEEEECTTSCHH-------HHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEE
T ss_pred             EeeEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEE
Confidence            579999999999999    8889999999999       999999999999999999999887532     1233 6799


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      |+||++.+++.+||+||+.++....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+++|+++|||
T Consensus        86 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD  165 (224)
T 2pcj_A           86 FVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD  165 (224)
T ss_dssp             EECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             EEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            99999999999999999998765544332334567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+|||+.++
T Consensus       166 EPt~~LD~~~~  176 (224)
T 2pcj_A          166 EPTGNLDSANT  176 (224)
T ss_dssp             STTTTCCHHHH
T ss_pred             CCCCCCCHHHH
Confidence            99999998753

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=7e-44  Score=298.08  Aligned_cols=156  Identities=17%  Similarity=0.111  Sum_probs=138.5

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++......++.||||||
T Consensus        14 ~~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q   82 (359)
T 2yyz_A           14 GKVKAVDGVSFEVKDGE----FVALLGPSGCGKT-------TTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ   82 (359)
T ss_dssp             TTEEEEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred             CCEEEEeeeEEEEcCCC----EEEEEcCCCchHH-------HHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence            44579999999999999    8889999999999       999999999999999999999988665444678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++++||+||+.+.....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus        83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s  162 (359)
T 2yyz_A           83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS  162 (359)
T ss_dssp             SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred             CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence            99999999999999986544333333345678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      +||+..+
T Consensus       163 ~LD~~~r  169 (359)
T 2yyz_A          163 NLDANLR  169 (359)
T ss_dssp             TSCHHHH
T ss_pred             cCCHHHH
Confidence            9998754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.7e-43  Score=297.10  Aligned_cols=156  Identities=18%  Similarity=0.169  Sum_probs=140.0

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccc
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSG   84 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~   84 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++..      ....++.
T Consensus        14 ~~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~   82 (372)
T 1g29_1           14 GEVTAVREMSLEVKDGE----FMILLGPSGCGKT-------TTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD   82 (372)
T ss_dssp             TTEEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             CCEEEEeeeEEEEcCCC----EEEEECCCCcHHH-------HHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence            34579999999999999    8889999999999       99999999999999999999998765      3334578


Q ss_pred             eEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           85 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        85 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      ||||||++.+++++||+||+.++....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||
T Consensus        83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL  162 (372)
T 1g29_1           83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL  162 (372)
T ss_dssp             EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999998766555444456678999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      ||||||+||+..+
T Consensus       163 LDEP~s~LD~~~r  175 (372)
T 1g29_1          163 MDEPLSNLDAKLR  175 (372)
T ss_dssp             EECTTTTSCHHHH
T ss_pred             ECCCCccCCHHHH
Confidence            9999999998754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=2.5e-43  Score=283.86  Aligned_cols=156  Identities=20%  Similarity=0.204  Sum_probs=136.5

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc----cHHhhccceE
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM----HLFQYLSGIG   86 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~----~~~~~~~~ig   86 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++.    ...++++.|+
T Consensus        35 ~~~~vL~~vsl~i~~Ge----i~~liG~NGsGKS-------TLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~  103 (263)
T 2olj_A           35 GSLEVLKGINVHIREGE----VVVVIGPSGSGKS-------TFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG  103 (263)
T ss_dssp             TTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred             CCEEEEEeeEEEEcCCC----EEEEEcCCCCcHH-------HHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence            33579999999999999    8889999999999       9999999999999999999998874    2344567899


Q ss_pred             EecCCCCCCCCCCHHHHHHHHH-HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           87 YCPQFNGINEHLTAQEMLECFS-ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      ||||++.+++.+||+||+.++. ...+.+..+..++++++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus       104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL  183 (263)
T 2olj_A          104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF  183 (263)
T ss_dssp             EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            9999999999999999998854 333333233456788999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCC
Q psy860          166 KLPFSSQNLYNT  177 (178)
Q Consensus       166 DEPt~gLD~~~~  177 (178)
                      ||||+|||+.++
T Consensus       184 DEPts~LD~~~~  195 (263)
T 2olj_A          184 DEPTSALDPEMV  195 (263)
T ss_dssp             ESTTTTSCHHHH
T ss_pred             eCCcccCCHHHH
Confidence            999999998754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=9.1e-44  Score=297.03  Aligned_cols=156  Identities=13%  Similarity=0.073  Sum_probs=139.2

Q ss_pred             Cccc--cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----HHhhcc
Q psy860           11 GYCP--QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----LFQYLS   83 (178)
Q Consensus        11 ~~~~--~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~~~~~~   83 (178)
                      |..+  +|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++..     ....++
T Consensus        14 ~~~~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r   82 (353)
T 1oxx_K           14 KKGKVVALDNVNINIENGE----RFGILGPSGAGKT-------TFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (353)
T ss_dssp             GGGTEEEEEEEEEEECTTC----EEEEECSCHHHHH-------HHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             CCEeeeeEeceEEEECCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence            3346  9999999999999    8889999999999       99999999999999999999998865     444567


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      .||||||++.+++++||+||+.++....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus        83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lL  162 (353)
T 1oxx_K           83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL  162 (353)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            89999999999999999999988654444433344567899999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYNT  177 (178)
Q Consensus       164 llDEPt~gLD~~~~  177 (178)
                      |||||||+||+..+
T Consensus       163 LLDEP~s~LD~~~r  176 (353)
T 1oxx_K          163 LLDEPFSNLDARMR  176 (353)
T ss_dssp             EEESTTTTSCGGGH
T ss_pred             EEECCcccCCHHHH
Confidence            99999999999764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=2.5e-43  Score=283.68  Aligned_cols=156  Identities=17%  Similarity=0.119  Sum_probs=136.1

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-------------
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-------------   77 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-------------   77 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++..             
T Consensus        17 ~~~~vl~~vsl~i~~Ge----~~~liG~nGsGKS-------TLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~   85 (262)
T 1b0u_A           17 GGHEVLKGVSLQARAGD----VISIIGSSGSGKS-------TFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK   85 (262)
T ss_dssp             TTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred             CCEEEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence            34579999999999999    8889999999999       99999999999999999999988741             


Q ss_pred             --HHhhccceEEecCCCCCCCCCCHHHHHHHHH-HhcCCCCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHH
Q psy860           78 --LFQYLSGIGYCPQFNGINEHLTAQEMLECFS-ALRGIPGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTA  153 (178)
Q Consensus        78 --~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IA  153 (178)
                        ..++++.+|||||++.+++.+||+||+.++. ...+.+..+.++++.++++.+++.+. .++++.+|||||||||+||
T Consensus        86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA  165 (262)
T 1b0u_A           86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  165 (262)
T ss_dssp             HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred             hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence              1345678999999999999999999998854 33333323345678899999999988 9999999999999999999


Q ss_pred             HHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          154 MALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       154 raL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |||+.+|++|||||||+|||+.++
T Consensus       166 raL~~~p~lllLDEPts~LD~~~~  189 (262)
T 1b0u_A          166 RALAMEPDVLLFDEPTSALDPELV  189 (262)
T ss_dssp             HHHHTCCSEEEEESTTTTSCHHHH
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHH
Confidence            999999999999999999998753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=6.8e-43  Score=280.38  Aligned_cols=156  Identities=19%  Similarity=0.204  Sum_probs=137.6

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP   89 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~   89 (178)
                      |..++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++.. ..++++.|||+|
T Consensus        26 ~~~~vl~~vsl~i~~Ge----i~~l~G~NGsGKS-------TLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~   94 (256)
T 1vpl_A           26 GKKEILKGISFEIEEGE----IFGLIGPNGAGKT-------TTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP   94 (256)
T ss_dssp             TTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred             CCEEEEEeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEc
Confidence            33579999999999999    8889999999999       99999999999999999999988753 345667899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |++.+++.+||+||+.++....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt  174 (256)
T 1vpl_A           95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT  174 (256)
T ss_dssp             TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            99999999999999998765544332233467889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       175 s~LD~~~~  182 (256)
T 1vpl_A          175 SGLDVLNA  182 (256)
T ss_dssp             TTCCHHHH
T ss_pred             cccCHHHH
Confidence            99998753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.5e-43  Score=297.36  Aligned_cols=156  Identities=18%  Similarity=0.185  Sum_probs=131.9

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++......++.||||||
T Consensus        22 ~~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q   90 (372)
T 1v43_A           22 GNFTAVNKLNLTIKDGE----FLVLLGPSGCGKT-------TTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ   90 (372)
T ss_dssp             TTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred             CCEEEEeeeEEEECCCC----EEEEECCCCChHH-------HHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence            34579999999999999    8889999999999       999999999999999999999988654444678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++++||+||+.|+....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus        91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s  170 (372)
T 1v43_A           91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS  170 (372)
T ss_dssp             ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred             CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence            99999999999999886443333333445678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      +||+..+
T Consensus       171 ~LD~~~r  177 (372)
T 1v43_A          171 NLDAKLR  177 (372)
T ss_dssp             TSCHHHH
T ss_pred             cCCHHHH
Confidence            9998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=5.8e-42  Score=268.37  Aligned_cols=147  Identities=14%  Similarity=0.164  Sum_probs=133.4

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      ++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++.   +.++.++|+||++.
T Consensus        23 ~il~~vsl~i~~Ge----~~~iiG~NGsGKS-------TLlk~l~Gl~~p~~G~I~~~g~~~~---~~~~~i~~v~q~~~   88 (214)
T 1sgw_A           23 PVLERITMTIEKGN----VVNFHGPNGIGKT-------TLLKTISTYLKPLKGEIIYNGVPIT---KVKGKIFFLPEEII   88 (214)
T ss_dssp             EEEEEEEEEEETTC----CEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEEGG---GGGGGEEEECSSCC
T ss_pred             eEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEhh---hhcCcEEEEeCCCc
Confidence            79999999999999    8889999999999       9999999999999999999998875   35678999999999


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN  173 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD  173 (178)
                      +++.+||+||+.++....+. ..+ .+++.++++.+++.+. ++++.+|||||||||+|||||+.+|+++||||||+|||
T Consensus        89 ~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD  165 (214)
T 1sgw_A           89 VPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID  165 (214)
T ss_dssp             CCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred             CCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence            99999999999987554433 233 6678999999999988 99999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy860          174 LYNT  177 (178)
Q Consensus       174 ~~~~  177 (178)
                      +.++
T Consensus       166 ~~~~  169 (214)
T 1sgw_A          166 EDSK  169 (214)
T ss_dssp             TTTH
T ss_pred             HHHH
Confidence            9874

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=6.5e-43  Score=291.23  Aligned_cols=152  Identities=15%  Similarity=0.130  Sum_probs=137.2

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |.. +|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++......++.||||||
T Consensus        12 ~~~-~l~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q   79 (348)
T 3d31_A           12 KNF-SLDNLSLKVESGE----YFVILGPTGAGKT-------LFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ   79 (348)
T ss_dssp             SSC-EEEEEEEEECTTC----EEEEECCCTHHHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred             CCE-EEeeeEEEEcCCC----EEEEECCCCccHH-------HHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence            435 9999999999999    8889999999999       999999999999999999999988665445678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      ++.+++++||+||+.+.....+.+.  . +++.++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus        80 ~~~l~~~ltv~enl~~~~~~~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s  156 (348)
T 3d31_A           80 NYSLFPHMNVKKNLEFGMRMKKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS  156 (348)
T ss_dssp             TCCCCTTSCHHHHHHHHHHHHCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred             CcccCCCCCHHHHHHHHHHHcCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence            9999999999999998765544322  2 778999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      +||+..+
T Consensus       157 ~LD~~~~  163 (348)
T 3d31_A          157 ALDPRTQ  163 (348)
T ss_dssp             TSCHHHH
T ss_pred             cCCHHHH
Confidence            9998754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=6.5e-43  Score=280.43  Aligned_cols=156  Identities=15%  Similarity=0.098  Sum_probs=134.9

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEE
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGY   87 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~   87 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++...   ...+++++|
T Consensus        18 ~~~~vl~~vsl~i~~Ge----~~~liG~nGsGKS-------TLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   86 (257)
T 1g6h_A           18 GEFKALDGVSISVNKGD----VTLIIGPNGSGKS-------TLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR   86 (257)
T ss_dssp             TTEEEEEEECCEEETTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred             CCEeeEeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence            33579999999999999    8889999999999       999999999999999999999987542   234668999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHh--cC-----------CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHH
Q psy860           88 CPQFNGINEHLTAQEMLECFSAL--RG-----------IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAM  154 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAr  154 (178)
                      +||++.+++.+||.||+.++...  .+           ....+.++++.++++.+++.+..++++.+|||||||||+|||
T Consensus        87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAr  166 (257)
T 1g6h_A           87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR  166 (257)
T ss_dssp             CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred             EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHH
Confidence            99999999999999999875322  11           122233467889999999999999999999999999999999


Q ss_pred             HHhCCCCeEEeeCCCCCCCCCCC
Q psy860          155 ALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       155 aL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      ||+.+|++|||||||+|||+.++
T Consensus       167 aL~~~p~lllLDEPts~LD~~~~  189 (257)
T 1g6h_A          167 ALMTNPKMIVMDEPIAGVAPGLA  189 (257)
T ss_dssp             HHHTCCSEEEEESTTTTCCHHHH
T ss_pred             HHHcCCCEEEEeCCccCCCHHHH
Confidence            99999999999999999998753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=3.4e-42  Score=277.69  Aligned_cols=154  Identities=17%  Similarity=0.156  Sum_probs=137.5

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEe
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYC   88 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v   88 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++..  ..+.++.++|+
T Consensus        22 ~~~~vL~~vsl~i~~Ge----~~~liG~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v   90 (266)
T 4g1u_C           22 QQQALINDVSLHIASGE----MVAIIGPNGAGKS-------TLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM   90 (266)
T ss_dssp             TTEEEEEEEEEEEETTC----EEEEECCTTSCHH-------HHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred             CCeeEEEeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence            44679999999999999    8889999999999       99999999999999999999998864  34566779999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC------CCCe
Q psy860           89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG------DRDD  162 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~------~P~~  162 (178)
                      ||++.+++.+||+||+.+.....  ...+.+++++++++.+++.+..++++.+|||||||||+|||||++      +|++
T Consensus        91 ~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l  168 (266)
T 4g1u_C           91 RQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW  168 (266)
T ss_dssp             CSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred             ecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence            99999888999999998754332  334556789999999999999999999999999999999999999      9999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      |||||||+|||+.++
T Consensus       169 LllDEPts~LD~~~~  183 (266)
T 4g1u_C          169 LFLDEPTSALDLYHQ  183 (266)
T ss_dssp             EEECCCCSSCCHHHH
T ss_pred             EEEeCccccCCHHHH
Confidence            999999999998753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=6.9e-42  Score=271.98  Aligned_cols=153  Identities=18%  Similarity=0.136  Sum_probs=132.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHh-hccceEEec
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQ-YLSGIGYCP   89 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~-~~~~ig~v~   89 (178)
                      .++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++..  ..+ .+++++|+|
T Consensus        19 ~~vl~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   87 (240)
T 1ji0_A           19 IHAIKGIDLKVPRGQ----IVTLIGANGAGKT-------TTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVP   87 (240)
T ss_dssp             EEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEEC
T ss_pred             eeEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEe
Confidence            579999999999999    8889999999999       99999999999999999999998754  222 345699999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-CCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-LTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      |++.+++.+||+||+.++.. ......+..++++++++.++ +.+..++++.+|||||||||+|||||+++|++||||||
T Consensus        88 q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP  166 (240)
T 1ji0_A           88 EGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP  166 (240)
T ss_dssp             SSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred             cCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            99999999999999987531 12223334567888999995 98888999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       167 ts~LD~~~~  175 (240)
T 1ji0_A          167 SLGLAPILV  175 (240)
T ss_dssp             TTTCCHHHH
T ss_pred             cccCCHHHH
Confidence            999998753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.4e-41  Score=274.00  Aligned_cols=152  Identities=14%  Similarity=0.133  Sum_probs=134.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++... ++++.+||+||++
T Consensus        20 ~~vl~~vsl~i~~Ge----~~~liG~nGsGKS-------TLl~~i~Gl~~p~~G~I~~~g~~~~~~-~~~~~i~~v~q~~   87 (266)
T 2yz2_A           20 KKALENVSLVINEGE----CLLVAGNTGSGKS-------TLLQIVAGLIEPTSGDVLYDGERKKGY-EIRRNIGIAFQYP   87 (266)
T ss_dssp             EEEEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECCHH-HHGGGEEEECSSG
T ss_pred             cceeeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCcEEEECCEECchH-HhhhhEEEEeccc
Confidence            469999999999999    8889999999999       999999999999999999999887654 6677899999996


Q ss_pred             -CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC--ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           93 -GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT--EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        93 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                       .+++.+||+||+.++.... .+..+.++++.++++.+++.  +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        88 ~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt  166 (266)
T 2yz2_A           88 EDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL  166 (266)
T ss_dssp             GGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             hhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence             4667899999998754322 33344567789999999999  8999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +|||+.++
T Consensus       167 s~LD~~~~  174 (266)
T 2yz2_A          167 VGLDREGK  174 (266)
T ss_dssp             TTCCHHHH
T ss_pred             ccCCHHHH
Confidence            99998653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=2.4e-42  Score=274.80  Aligned_cols=149  Identities=19%  Similarity=0.188  Sum_probs=131.4

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI   94 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l   94 (178)
                      +|+||||+|++ |    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++......++.|||+||++.+
T Consensus        14 ~l~~isl~i~~-e----~~~liG~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l   81 (240)
T 2onk_A           14 FRLNVDFEMGR-D----YCVLLGPTGAGKS-------VFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL   81 (240)
T ss_dssp             EEEEEEEEECS-S----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCC
T ss_pred             EEeeeEEEECC-E----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCcc
Confidence            59999999999 9    8889999999999       9999999999999999999998876544456789999999999


Q ss_pred             CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860           95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus        95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                      ++.+||+||+.++....+.  ...+++++++++.+++.+..++++.+|||||||||+|||||+++|+++||||||+|||+
T Consensus        82 ~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~  159 (240)
T 2onk_A           82 FPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDL  159 (240)
T ss_dssp             CTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCH
T ss_pred             CCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            9999999999875322211  11246788999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy860          175 YNT  177 (178)
Q Consensus       175 ~~~  177 (178)
                      .++
T Consensus       160 ~~~  162 (240)
T 2onk_A          160 KTK  162 (240)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=2.6e-41  Score=274.17  Aligned_cols=155  Identities=14%  Similarity=0.084  Sum_probs=130.3

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--c--HHhhccceEE
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--H--LFQYLSGIGY   87 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~--~~~~~~~ig~   87 (178)
                      ..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++.  .  ..++++.|+|
T Consensus        33 ~~~vL~~isl~i~~Ge----~~~liG~NGsGKS-------TLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~  101 (279)
T 2ihy_A           33 GKTILKKISWQIAKGD----KWILYGLNGAGKT-------TLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGF  101 (279)
T ss_dssp             TEEEEEEEEEEEETTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEE
T ss_pred             CEEEEEeeeEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEE
Confidence            3579999999999999    8889999999999       9999999999999999999998875  2  3456778999


Q ss_pred             ecCCCCC--CCCCCHHHHHHHHHH----hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           88 CPQFNGI--NEHLTAQEMLECFSA----LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        88 v~Q~~~l--~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +||++.+  .+.+||+||+.+...    ..+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus       102 v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~  181 (279)
T 2ihy_A          102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQ  181 (279)
T ss_dssp             ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred             EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCC
Confidence            9998753  345699999986321    1111122334578899999999999999999999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      +|||||||+|||+.++
T Consensus       182 lLlLDEPts~LD~~~~  197 (279)
T 2ihy_A          182 VLILDEPAAGLDFIAR  197 (279)
T ss_dssp             EEEEESTTTTCCHHHH
T ss_pred             EEEEeCCccccCHHHH
Confidence            9999999999998754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=4e-40  Score=263.26  Aligned_cols=154  Identities=18%  Similarity=0.092  Sum_probs=126.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCcccccccccccccccH--Hh-hccceEE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNIMHL--FQ-YLSGIGY   87 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~~~~--~~-~~~~ig~   87 (178)
                      .++|+||||+|++||    +.+|+|+||||||       ||++.+.|+  .+|++|+|.++|.++...  .+ .+++++|
T Consensus        16 ~~vl~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~   84 (250)
T 2d2e_A           16 ETILKGVNLVVPKGE----VHALMGPNGAGKS-------TLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFL   84 (250)
T ss_dssp             EEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCC
T ss_pred             EEEEeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEE
Confidence            579999999999999    8889999999999       999999998  789999999999987542  22 2456999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHH-hcCC--CCCChhHHHHHHHHHcCC-CccccCcCCC-CChHHHHHHHHHHHHhCCCCe
Q psy860           88 CPQFNGINEHLTAQEMLECFSA-LRGI--PGVKSGPIIDYWIDLLGL-TEYRHRVSGR-YSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~-~~~~--~~~~~~~~~~~~l~~~~L-~~~~~~~~~~-LSgGqkQRv~IAraL~~~P~~  162 (178)
                      +||++.+++.+||+||+.+... ..+.  ...+..+++.++++.+++ .+..++++.+ |||||||||+|||||+++|++
T Consensus        85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~l  164 (250)
T 2d2e_A           85 AFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTY  164 (250)
T ss_dssp             CCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSE
T ss_pred             eccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCE
Confidence            9999999999999999987542 2221  112234568889999999 4888999999 999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      |||||||+|||+.++
T Consensus       165 llLDEPts~LD~~~~  179 (250)
T 2d2e_A          165 AVLDETDSGLDIDAL  179 (250)
T ss_dssp             EEEECGGGTTCHHHH
T ss_pred             EEEeCCCcCCCHHHH
Confidence            999999999998753

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=7e-40  Score=261.86  Aligned_cols=147  Identities=13%  Similarity=0.098  Sum_probs=131.0

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~   91 (178)
                      ++|+||||+|++||    +.+|+|+||+|||       ||++++.|+.+|+ |+|.++|.++..  ..++++.++|+||+
T Consensus        14 ~vl~~vsl~i~~Ge----~~~liG~NGsGKS-------TLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~   81 (249)
T 2qi9_C           14 TRLGPLSGEVRAGE----ILHLVGPNGAGKS-------TLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQ   81 (249)
T ss_dssp             TTEEEEEEEEETTC----EEEEECCTTSSHH-------HHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSC
T ss_pred             EEEeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCC
Confidence            68999999999999    8889999999999       9999999999999 999999988753  34566789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC-------eEE
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD-------DGF  164 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~-------~ll  164 (178)
                      +.+++.+||+||+.++. ...   .. .+++.++++.+++.+..++++.+|||||||||+|||||+.+|+       +||
T Consensus        82 ~~~~~~~tv~e~l~~~~-~~~---~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll  156 (249)
T 2qi9_C           82 QTPPFATPVWHYLTLHQ-HDK---TR-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL  156 (249)
T ss_dssp             CCCCTTCBHHHHHHTTC-SST---TC-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred             CccCCCCcHHHHHHHhh-ccC---Cc-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE
Confidence            99999999999998642 111   12 5678899999999999999999999999999999999999999       999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+|||+.++
T Consensus       157 LDEPts~LD~~~~  169 (249)
T 2qi9_C          157 LDEPMNSLDVAQQ  169 (249)
T ss_dssp             ESSTTTTCCHHHH
T ss_pred             EECCcccCCHHHH
Confidence            9999999998753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=8.6e-40  Score=261.86  Aligned_cols=143  Identities=20%  Similarity=0.191  Sum_probs=125.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.           +++.++|+||++
T Consensus        18 ~~vl~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~I~-----------~~~~i~~v~q~~   75 (253)
T 2nq2_C           18 NFLFQQLNFDLNKGD----ILAVLGQNGCGKS-------TLLDLLLGIHRPIQGKIE-----------VYQSIGFVPQFF   75 (253)
T ss_dssp             TEEEEEEEEEEETTC----EEEEECCSSSSHH-------HHHHHHTTSSCCSEEEEE-----------ECSCEEEECSCC
T ss_pred             CeEEEEEEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEE-----------EeccEEEEcCCC
Confidence            479999999999999    8889999999999       999999999999999986           356799999999


Q ss_pred             CCCCCCCHHHHHHHHHHhc-C---CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           93 GINEHLTAQEMLECFSALR-G---IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      .+++.+||+||+.++.... +   ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus        76 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP  155 (253)
T 2nq2_C           76 SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP  155 (253)
T ss_dssp             CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSS
T ss_pred             ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            9988999999998754221 1   11223346788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       156 ts~LD~~~~  164 (253)
T 2nq2_C          156 TSALDLANQ  164 (253)
T ss_dssp             STTSCHHHH
T ss_pred             cccCCHHHH
Confidence            999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=2.4e-39  Score=257.68  Aligned_cols=150  Identities=17%  Similarity=0.114  Sum_probs=128.0

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEec
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCP   89 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~   89 (178)
                      ..++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++...  .++++.++|+|
T Consensus        14 ~~~vl~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~   82 (243)
T 1mv5_A           14 SEQILRDISFEAQPNS----IIAFAGPSGGGKS-------TIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS   82 (243)
T ss_dssp             SSCSEEEEEEEECTTE----EEEEECCTTSSHH-------HHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred             CCceEEEeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence            3579999999999999    8889999999999       999999999999999999999887543  34567899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~  158 (178)
                      |++.+++ .||+||+.++..     .....+++.++++.+++.+..++           ++.+|||||||||+|||||++
T Consensus        83 q~~~l~~-~tv~enl~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~  156 (243)
T 1mv5_A           83 QDSAIMA-GTIRENLTYGLE-----GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR  156 (243)
T ss_dssp             CSSCCCC-EEHHHHTTSCTT-----SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             CCCcccc-ccHHHHHhhhcc-----CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence            9998876 599999976311     11234567888999998766544           457999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNTT  178 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~~  178 (178)
                      +|++|+|||||+|||+.+++
T Consensus       157 ~p~lllLDEPts~LD~~~~~  176 (243)
T 1mv5_A          157 NPKILMLDEATASLDSESES  176 (243)
T ss_dssp             CCSEEEEECCSCSSCSSSCC
T ss_pred             CCCEEEEECCcccCCHHHHH
Confidence            99999999999999998864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1.6e-39  Score=259.43  Aligned_cols=147  Identities=16%  Similarity=0.110  Sum_probs=125.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++..  ..++++.|+|+||
T Consensus        22 ~~vl~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q   90 (247)
T 2ff7_A           22 PVILDNINLSIKQGE----VIGIVGRSGSGKS-------TLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQ   90 (247)
T ss_dssp             CEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred             cceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeC
Confidence            479999999999999    8889999999999       99999999999999999999998754  3456678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++ .||+||+.++.     . ....+++.++++.+++.+..++           ++.+|||||||||+|||||+.+
T Consensus        91 ~~~l~~-~tv~enl~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~  163 (247)
T 2ff7_A           91 DNVLLN-RSIIDNISLAN-----P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN  163 (247)
T ss_dssp             SCCCTT-SBHHHHHTTTC-----T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred             CCcccc-ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence            998876 69999997641     1 1224567778888888655544           4589999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|||||||+|||+.++
T Consensus       164 p~lllLDEPts~LD~~~~  181 (247)
T 2ff7_A          164 PKILIFDEATSALDYESE  181 (247)
T ss_dssp             CSEEEECCCCSCCCHHHH
T ss_pred             CCEEEEeCCcccCCHHHH
Confidence            999999999999998753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=2.7e-39  Score=260.77  Aligned_cols=155  Identities=15%  Similarity=0.114  Sum_probs=129.8

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCcccccccccccccccH--Hhh-ccceE
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNIMHL--FQY-LSGIG   86 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~~~~--~~~-~~~ig   86 (178)
                      ..++|+||||+|++||    +.+|+|+||||||       ||++++.|+  .+|++|+|.++|.++...  ... +++++
T Consensus        32 ~~~vl~~vsl~i~~Ge----~~~l~G~NGsGKS-------TLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~  100 (267)
T 2zu0_C           32 DKAILRGLSLDVHPGE----VHAIMGPNGSGKS-------TLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIF  100 (267)
T ss_dssp             TEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEE
T ss_pred             CEEEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEE
Confidence            3579999999999999    8889999999999       999999999  478999999999987542  222 45699


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHH-h---cCCC---CCChhHHHHHHHHHcCCC-ccccCcCC-CCChHHHHHHHHHHHHh
Q psy860           87 YCPQFNGINEHLTAQEMLECFSA-L---RGIP---GVKSGPIIDYWIDLLGLT-EYRHRVSG-RYSGGNKRKLSTAMALI  157 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~-~---~~~~---~~~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGqkQRv~IAraL~  157 (178)
                      |+||++.+++.+|+.+++.+... .   .+..   ..+..+++.++++.+++. +..++++. +|||||||||+|||||+
T Consensus       101 ~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~  180 (267)
T 2zu0_C          101 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV  180 (267)
T ss_dssp             EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred             EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999976431 1   1211   112345688999999996 57889987 59999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|++|||||||+|||+.++
T Consensus       181 ~~p~lLlLDEPts~LD~~~~  200 (267)
T 2zu0_C          181 LEPELCILDESDSGLDIDAL  200 (267)
T ss_dssp             HCCSEEEEESTTTTCCHHHH
T ss_pred             hCCCEEEEeCCCCCCCHHHH
Confidence            99999999999999998753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=4.3e-39  Score=259.15  Aligned_cols=145  Identities=15%  Similarity=0.108  Sum_probs=129.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE-EecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG-YCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig-~v~Q~   91 (178)
                      .++|++|||+|+ ||    +.+|+|+||+|||       ||++++.|+. |++|+|.++|.++... ..++.++ |+||+
T Consensus        18 ~~il~~vsl~i~-Ge----~~~i~G~NGsGKS-------TLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~~~~i~~~v~Q~   83 (263)
T 2pjz_A           18 RFSLENINLEVN-GE----KVIILGPNGSGKT-------TLLRAISGLL-PYSGNIFINGMEVRKI-RNYIRYSTNLPEA   83 (263)
T ss_dssp             EEEEEEEEEEEC-SS----EEEEECCTTSSHH-------HHHHHHTTSS-CCEEEEEETTEEGGGC-SCCTTEEECCGGG
T ss_pred             ceeEEeeeEEEC-CE----EEEEECCCCCCHH-------HHHHHHhCCC-CCCcEEEECCEECcch-HHhhheEEEeCCC
Confidence            469999999999 99    8889999999999       9999999999 9999999999877543 2266899 99999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      +.+  .+|++||+.++....    ....+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus        84 ~~l--~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts  157 (263)
T 2pjz_A           84 YEI--GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE  157 (263)
T ss_dssp             SCT--TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred             Ccc--CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence            887  899999999865443    23356789999999999 99999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy860          171 SQNLYNT  177 (178)
Q Consensus       171 gLD~~~~  177 (178)
                      |||+.++
T Consensus       158 ~LD~~~~  164 (263)
T 2pjz_A          158 NVDAARR  164 (263)
T ss_dssp             TCCHHHH
T ss_pred             ccCHHHH
Confidence            9998753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=1.2e-39  Score=263.40  Aligned_cols=151  Identities=14%  Similarity=0.045  Sum_probs=126.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++..  ...+++.|+||||
T Consensus        32 ~~vl~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q  100 (271)
T 2ixe_A           32 VQVLQGLTFTLYPGK----VTALVGPNGSGKS-------TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ  100 (271)
T ss_dssp             SCCEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECS
T ss_pred             ceeeEeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEec
Confidence            479999999999999    8889999999999       99999999999999999999998754  3445678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCC-CChh-----HHHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPG-VKSG-----PIIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      ++.+++ .||+||+.++...  ... .+..     ..+.++++.+  ++....++++.+|||||||||+|||||+.+|++
T Consensus       101 ~~~l~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l  177 (271)
T 2ixe_A          101 EPLLFG-RSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL  177 (271)
T ss_dssp             SCCCCS-SBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CCcccc-ccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCE
Confidence            998876 5999999864211  111 0111     1234567777  677788999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      |||||||+|||+.++
T Consensus       178 llLDEPts~LD~~~~  192 (271)
T 2ixe_A          178 LILDNATSALDAGNQ  192 (271)
T ss_dssp             EEEESTTTTCCHHHH
T ss_pred             EEEECCccCCCHHHH
Confidence            999999999998753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=1.5e-39  Score=266.81  Aligned_cols=152  Identities=16%  Similarity=0.151  Sum_probs=126.3

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+.+   .++|+||||+|++||    +.+|+|+||||||       ||++.+.|+.+|++|+|.++|.++..  ..++
T Consensus        61 ~~y~~~---~~vL~~isl~i~~Ge----~vaivG~sGsGKS-------TLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~  126 (306)
T 3nh6_A           61 FSYADG---RETLQDVSFTVMPGQ----TLALVGPSGAGKS-------TILRLLFRFYDISSGCIRIDGQDISQVTQASL  126 (306)
T ss_dssp             EESSTT---CEEEEEEEEEECTTC----EEEEESSSCHHHH-------HHHHHHTTSSCCSEEEEEETTEETTSBCHHHH
T ss_pred             EEcCCC---CceeeeeeEEEcCCC----EEEEECCCCchHH-------HHHHHHHcCCCCCCcEEEECCEEcccCCHHHH
Confidence            556432   479999999999999    8889999999999       99999999999999999999999865  4567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.+|+ .||+||+.++...      ...+++.++++.+++.+.           .++...+|||||||||
T Consensus       127 r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv  199 (306)
T 3nh6_A          127 RSHIGVVPQDTVLFN-DTIADNIRYGRVT------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV  199 (306)
T ss_dssp             HHTEEEECSSCCCCS-EEHHHHHHTTSTT------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred             hcceEEEecCCccCc-ccHHHHHHhhccc------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence            889999999998874 6999999864211      123445666666665433           3455679999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++||||||||+||+.+
T Consensus       200 aiARAL~~~p~iLlLDEPts~LD~~~  225 (306)
T 3nh6_A          200 AIARTILKAPGIILLDEATSALDTSN  225 (306)
T ss_dssp             HHHHHHHHCCSEEEEECCSSCCCHHH
T ss_pred             HHHHHHHhCCCEEEEECCcccCCHHH
Confidence            99999999999999999999999865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=266.74  Aligned_cols=147  Identities=18%  Similarity=0.130  Sum_probs=130.4

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEe
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYC   88 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v   88 (178)
                      |..++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+ ++|+|.++|+++..  ..++++.|+||
T Consensus        32 ~~~~~L~~vsl~i~~Ge----~~~llGpsGsGKS-------TLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v   99 (390)
T 3gd7_A           32 GGNAILENISFSISPGQ----RVGLLGRTGSGKS-------TLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVI   99 (390)
T ss_dssp             SSCCSEEEEEEEECTTC----EEEEEESTTSSHH-------HHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred             CCeEEeeceeEEEcCCC----EEEEECCCCChHH-------HHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEE
Confidence            34579999999999999    8889999999999       99999999998 89999999998865  34567889999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCC-----------CChHHHHHHHHHHHHh
Q psy860           89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGR-----------YSGGNKRKLSTAMALI  157 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------LSgGqkQRv~IAraL~  157 (178)
                      ||++.+|+ +||+||+.++       ....++++.++++.+++.+..++++.+           |||||||||+|||||+
T Consensus       100 ~Q~~~lf~-~tv~enl~~~-------~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~  171 (390)
T 3gd7_A          100 PQKVFIFS-GTFRKNLDPN-------AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL  171 (390)
T ss_dssp             SCCCCCCS-EEHHHHHCTT-------CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred             cCCcccCc-cCHHHHhhhc-------cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence            99999886 6999998532       123456788999999999999999998           9999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+|++||||||||+||+..+
T Consensus       172 ~~P~lLLLDEPts~LD~~~~  191 (390)
T 3gd7_A          172 SKAKILLLDEPSAHLDPVTY  191 (390)
T ss_dssp             TTCCEEEEESHHHHSCHHHH
T ss_pred             cCCCEEEEeCCccCCCHHHH
Confidence            99999999999999998653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=1.9e-37  Score=249.07  Aligned_cols=146  Identities=16%  Similarity=0.079  Sum_probs=122.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+| +|+|.++|.++..  ..++++.|+|+||
T Consensus        33 ~~vl~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q  100 (260)
T 2ghi_A           33 HRTLKSINFFIPSGT----TCALVGHTGSGKS-------TIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQ  100 (260)
T ss_dssp             SCSEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECS
T ss_pred             CceeEeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcC
Confidence            369999999999999    8889999999999       999999999987 7999999988754  3456778999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++ .||+||+.++.    ..  ...+++.++++.+++.+.           .++++.+|||||||||+|||||+.+
T Consensus       101 ~~~l~~-~tv~enl~~~~----~~--~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~  173 (260)
T 2ghi_A          101 DTILFN-ETIKYNILYGK----LD--ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD  173 (260)
T ss_dssp             SCCCCS-EEHHHHHHTTC----TT--CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred             CCcccc-cCHHHHHhccC----CC--CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence            998875 69999997631    11  123456677777776443           2456789999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++|||||||+|||+.++
T Consensus       174 p~lllLDEPts~LD~~~~  191 (260)
T 2ghi_A          174 PKIVIFDEATSSLDSKTE  191 (260)
T ss_dssp             CSEEEEECCCCTTCHHHH
T ss_pred             CCEEEEECccccCCHHHH
Confidence            999999999999998653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.4e-36  Score=239.80  Aligned_cols=135  Identities=21%  Similarity=0.156  Sum_probs=112.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|           .|+|+||++
T Consensus        21 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g-----------~i~~v~q~~   78 (229)
T 2pze_A           21 TPVLKDINFKIERGQ----LLAVAGSTGAGKT-------SLLMMIMGELEPSEGKIKHSG-----------RISFCSQFS   78 (229)
T ss_dssp             CCSEEEEEEEEETTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEECS-----------CEEEECSSC
T ss_pred             ceeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCcCCccEEEECC-----------EEEEEecCC
Confidence            579999999999999    8889999999999       999999999999999999887           499999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      .+++. ||+||+.++.     ..  ......++++.+++.+.           .++++.+|||||||||+|||||+.+|+
T Consensus        79 ~~~~~-tv~enl~~~~-----~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~  150 (229)
T 2pze_A           79 WIMPG-TIKENIIFGV-----SY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD  150 (229)
T ss_dssp             CCCSB-CHHHHHHTTS-----CC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred             cccCC-CHHHHhhccC-----Cc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            88875 9999997631     11  12234445555555432           233468999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      ++||||||+|||+.++
T Consensus       151 lllLDEPts~LD~~~~  166 (229)
T 2pze_A          151 LYLLDSPFGYLDVLTE  166 (229)
T ss_dssp             EEEEESTTTTSCHHHH
T ss_pred             EEEEECcccCCCHHHH
Confidence            9999999999998653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=7.6e-37  Score=269.61  Aligned_cols=148  Identities=14%  Similarity=0.087  Sum_probs=127.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|++||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+  ..++|+.++||||
T Consensus       356 ~~~l~~i~l~i~~G~----~~~ivG~sGsGKS-------Tll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q  424 (582)
T 3b5x_A          356 KPALSHVSFSIPQGK----TVALVGRSGSGKS-------TIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQ  424 (582)
T ss_pred             ccccccceEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcC
Confidence            479999999999999    8889999999999       99999999999999999999998864  4567889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++ .|++||+.++..    + ....+++.++++.+++.+..++           ...+||||||||++|||||+.+
T Consensus       425 ~~~l~~-~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~  498 (582)
T 3b5x_A          425 NVHLFN-DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD  498 (582)
T ss_pred             CCcccc-ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence            999886 499999986421    1 1234567888888887655544           3479999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++++||||||+||+.++
T Consensus       499 p~illlDEpts~LD~~~~  516 (582)
T 3b5x_A          499 APVLILDEATSALDTESE  516 (582)
T ss_pred             CCEEEEECccccCCHHHH
Confidence            999999999999999764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=7.5e-37  Score=269.62  Aligned_cols=148  Identities=16%  Similarity=0.131  Sum_probs=126.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++.+  ..++|+.++||||
T Consensus       356 ~~~l~~v~~~i~~G~----~~~ivG~sGsGKS-------TLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q  424 (582)
T 3b60_A          356 VPALRNINLKIPAGK----TVALVGRSGSGKS-------TIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ  424 (582)
T ss_dssp             CCSEEEEEEEECTTC----EEEEEECTTSSHH-------HHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECS
T ss_pred             CccccceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEcc
Confidence            479999999999999    8889999999999       99999999999999999999998864  4567788999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++. |++||+.++..    + ....+++.++++.+++.+..++           ...+|||||||||+|||||+.+
T Consensus       425 ~~~l~~~-tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~  498 (582)
T 3b60_A          425 NVHLFND-TVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD  498 (582)
T ss_dssp             SCCCCSS-BHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             CCcCCCC-CHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence            9998874 99999986421    1 1234567788888877654433           4579999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~~  177 (178)
                      |++++||||||+||+.++
T Consensus       499 p~illlDEpts~LD~~~~  516 (582)
T 3b60_A          499 SPILILDEATSALDTESE  516 (582)
T ss_dssp             CSEEEEETTTSSCCHHHH
T ss_pred             CCEEEEECccccCCHHHH
Confidence            999999999999998753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=3e-36  Score=265.67  Aligned_cols=146  Identities=20%  Similarity=0.163  Sum_probs=124.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|++||    +.+|+|+||||||       |+++.+.|+.+|++|+|.++|.++.+  ..++|+.++||||
T Consensus       354 ~~~l~~isl~i~~G~----~~~ivG~sGsGKS-------Tll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q  422 (578)
T 4a82_A          354 APILKDINLSIEKGE----TVAFVGMSGGGKS-------TLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ  422 (578)
T ss_dssp             CCSEEEEEEEECTTC----EEEEECSTTSSHH-------HHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECS
T ss_pred             CcceeeeEEEECCCC----EEEEECCCCChHH-------HHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeC
Confidence            479999999999999    8889999999999       99999999999999999999999875  4567889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-----------CcCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-----------RVSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++. |++||+.+..     + ....+++.++++..++.+..+           +...+|||||||||+|||||+.+
T Consensus       423 ~~~l~~~-tv~eni~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~  495 (578)
T 4a82_A          423 DNILFSD-TVKENILLGR-----P-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN  495 (578)
T ss_dssp             SCCCCSS-BHHHHHGGGC-----S-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred             CCccCcc-cHHHHHhcCC-----C-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcC
Confidence            9998866 9999997631     1 122455667777776644333           34468999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~  176 (178)
                      |++++||||||+||+.+
T Consensus       496 p~illlDEpts~LD~~~  512 (578)
T 4a82_A          496 PPILILDEATSALDLES  512 (578)
T ss_dssp             CSEEEEESTTTTCCHHH
T ss_pred             CCEEEEECccccCCHHH
Confidence            99999999999999865

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=2.7e-36  Score=266.88  Aligned_cols=146  Identities=18%  Similarity=0.124  Sum_probs=124.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|++||    +.+|+|+||||||       ||++.+.|+.+|++|+|.++|.++.+  ..++|+.++||||
T Consensus       368 ~~~l~~isl~i~~G~----~~~ivG~sGsGKS-------Tll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q  436 (598)
T 3qf4_B          368 KPVLKDITFHIKPGQ----KVALVGPTGSGKT-------TIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQ  436 (598)
T ss_dssp             SCSCCSEEEECCTTC----EEEEECCTTSSTT-------HHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECT
T ss_pred             CccccceEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeC
Confidence            479999999999999    8889999999999       99999999999999999999999875  4567889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcC-----------CCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS-----------GRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.+++ .|++||+.+..     + ....+++.++++.+++.+..++.+           .+|||||||||+|||||+.+
T Consensus       437 ~~~lf~-~tv~eni~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~  509 (598)
T 3qf4_B          437 DTILFS-TTVKENLKYGN-----P-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN  509 (598)
T ss_dssp             TCCCCS-SBHHHHHHSSS-----T-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred             CCcccc-ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            998875 59999997631     1 112345666677776655554444           68999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~  176 (178)
                      |++|+||||||+||+.+
T Consensus       510 p~illlDEpts~LD~~~  526 (598)
T 3qf4_B          510 PKILILDEATSNVDTKT  526 (598)
T ss_dssp             CSEEEECCCCTTCCHHH
T ss_pred             CCEEEEECCccCCCHHH
Confidence            99999999999999865

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=240.63  Aligned_cols=135  Identities=19%  Similarity=0.169  Sum_probs=111.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|           .++|+||++
T Consensus        18 ~~vl~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~   75 (237)
T 2cbz_A           18 PPTLNGITFSIPEGA----LVAVVGQVGCGKS-------SLLSALLAEMDKVEGHVAIKG-----------SVAYVPQQA   75 (237)
T ss_dssp             CCSEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTCSEEEEEEEEECS-----------CEEEECSSC
T ss_pred             CceeeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECC-----------EEEEEcCCC
Confidence            479999999999999    8889999999999       999999999999999999987           399999998


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHH------cCCCc-----cccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDL------LGLTE-----YRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~------~~L~~-----~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      .+ +.+||+||+.++..   .. .+   ...++++.      +++.+     ..++++.+|||||||||+|||||+.+|+
T Consensus        76 ~~-~~~tv~enl~~~~~---~~-~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~  147 (237)
T 2cbz_A           76 WI-QNDSLRENILFGCQ---LE-EP---YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD  147 (237)
T ss_dssp             CC-CSEEHHHHHHTTSC---CC-TT---HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             cC-CCcCHHHHhhCccc---cC-HH---HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            64 58899999986421   11 11   22333333      33321     3568899999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      ++||||||+|||+.++
T Consensus       148 lllLDEPts~LD~~~~  163 (237)
T 2cbz_A          148 IYLFDDPLSAVDAHVG  163 (237)
T ss_dssp             EEEEESTTTTSCHHHH
T ss_pred             EEEEeCcccccCHHHH
Confidence            9999999999998653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.2e-35  Score=262.28  Aligned_cols=153  Identities=20%  Similarity=0.166  Sum_probs=125.8

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+++  ..++|+||||+|++||    +.+|+|+||||||       ||++.+.|+.+|++|+|.++|.++.+  ..++
T Consensus       349 ~~y~~~--~~~~l~~isl~i~~Ge----~~~ivG~sGsGKS-------Tll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~  415 (587)
T 3qf4_A          349 FRYFEN--TDPVLSGVNFSVKPGS----LVAVLGETGSGKS-------TLMNLIPRLIDPERGRVEVDELDVRTVKLKDL  415 (587)
T ss_dssp             ECSSSS--SCCSEEEEEEEECTTC----EEEEECSSSSSHH-------HHHHTTTTSSCCSEEEEEESSSBGGGBCHHHH
T ss_pred             EEcCCC--CCcceeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCccCCCcEEEECCEEcccCCHHHH
Confidence            455432  2479999999999999    8889999999999       99999999999999999999999875  4567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCC-----------CccccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGL-----------TEYRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgGqkQRv  150 (178)
                      |++|+||||++.+++. |++||+.+..     +. ...+++.++++..++           +...+++..+||||||||+
T Consensus       416 r~~i~~v~Q~~~lf~~-tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv  488 (587)
T 3qf4_A          416 RGHISAVPQETVLFSG-TIKENLKWGR-----ED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL  488 (587)
T ss_dssp             HHHEEEECSSCCCCSE-EHHHHHTTTC-----SS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred             HhheEEECCCCcCcCc-cHHHHHhccC-----CC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH
Confidence            8889999999998864 9999997531     11 123344445554443           3445677889999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++|+||||||+||+.+
T Consensus       489 ~lARal~~~p~illlDEpts~LD~~~  514 (587)
T 3qf4_A          489 SIARALVKKPKVLILDDCTSSVDPIT  514 (587)
T ss_dssp             HHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHH
Confidence            99999999999999999999999865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=1e-34  Score=236.61  Aligned_cols=134  Identities=20%  Similarity=0.141  Sum_probs=110.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|           .|+|+||++
T Consensus        51 ~~vl~~isl~i~~Ge----~~~i~G~NGsGKS-------TLlk~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~  108 (290)
T 2bbs_A           51 TPVLKDINFKIERGQ----LLAVAGSTGAGKT-------SLLMMIMGELEPSEGKIKHSG-----------RISFCSQNS  108 (290)
T ss_dssp             CCSEEEEEEEECTTC----EEEEEESTTSSHH-------HHHHHHTTSSCEEEEEEECCS-----------CEEEECSSC
T ss_pred             ceEEEeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCcEEEECC-----------EEEEEeCCC
Confidence            579999999999999    8889999999999       999999999999999999887           499999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-----------cCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-----------HRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      .+++. ||+||+. .  .   .. . ...+.++++.+++.+..           ++.+.+|||||||||+|||||+.+|+
T Consensus       109 ~l~~~-tv~enl~-~--~---~~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~  179 (290)
T 2bbs_A          109 WIMPG-TIKENII-G--V---SY-D-EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD  179 (290)
T ss_dssp             CCCSS-BHHHHHH-T--T---CC-C-HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred             ccCcc-cHHHHhh-C--c---cc-c-hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence            88775 9999986 2  1   11 1 22344555666664332           23458999999999999999999999


Q ss_pred             eEEeeCCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       162 ~lllDEPt~gLD~~~~  177 (178)
                      ++||||||+|||+.++
T Consensus       180 lllLDEPts~LD~~~~  195 (290)
T 2bbs_A          180 LYLLDSPFGYLDVLTE  195 (290)
T ss_dssp             EEEEESTTTTCCHHHH
T ss_pred             EEEEECCcccCCHHHH
Confidence            9999999999998653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.98  E-value=1.6e-33  Score=266.90  Aligned_cols=156  Identities=15%  Similarity=0.094  Sum_probs=130.7

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+++- ..+||+||||+|++||    ..+|+|++|||||       ||++.+.|+..|++|+|.+||.++.+  ...+
T Consensus      1084 f~Y~~~~-~~~VL~~isl~I~~Ge----~vaIVG~SGsGKS-------TL~~lL~rl~~p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A         1084 FAYPERP-EIEILKGLSFSVEPGQ----TLALVGPSGCGKS-------TVVALLERFYDTLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp             ECCTTSC-SSCSEEEEEEEECTTC----EEEEECSTTSSTT-------SHHHHHTTSSCCSSSEEEETTEETTTBCHHHH
T ss_pred             EeCCCCC-CCccccceeEEECCCC----EEEEECCCCChHH-------HHHHHHhcCccCCCCEEEECCEEhhhCCHHHH
Confidence            6785443 2479999999999999    8999999999999       99999999999999999999999986  5788


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccCcC----CCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHRVS----GRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~~----~~LSgGqkQRv  150 (178)
                      |++|+||||+|.+|.. |++||+.++.    -+.....+++.++++..++.+.       .|..+    .+||||||||+
T Consensus      1152 R~~i~~V~Qdp~LF~g-TIreNI~~gl----d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQri 1226 (1321)
T 4f4c_A         1152 RSQIAIVSQEPTLFDC-SIAENIIYGL----DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRI 1226 (1321)
T ss_dssp             HTTEEEECSSCCCCSE-EHHHHHSSSS----CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHH
T ss_pred             HhheEEECCCCEeeCc-cHHHHHhccC----CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHH
Confidence            9999999999998764 9999996531    1122345668888888877432       33434    46999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++||||||||+||+.+
T Consensus      1227 aiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A         1227 AIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp             HHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred             HHHHHHHhCCCEEEEeCccccCCHHH
Confidence            99999999999999999999999865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.97  E-value=6.4e-33  Score=262.30  Aligned_cols=154  Identities=17%  Similarity=0.077  Sum_probs=125.2

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+.+. ..++|+||||+|++||    ..+|+|+||||||       ||++.+.|+.+|++|+|.++|.++..  ...+
T Consensus       395 ~~y~~~~-~~~vL~~isl~i~~G~----~~~ivG~sGsGKS-------Tl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~  462 (1284)
T 3g5u_A          395 FSYPSRK-EVQILKGLNLKVKSGQ----TVALVGNSGCGKS-------TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL  462 (1284)
T ss_dssp             ECCSSTT-SCCSEEEEEEEECTTC----EEEEECCSSSSHH-------HHHHHTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred             EEcCCCC-CCcceecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEEHHhCCHHHH
Confidence            5564321 2479999999999999    8889999999999       99999999999999999999999875  4567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-----------ccccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-----------EYRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGqkQRv  150 (178)
                      |+.||||||++.+++. |++||+.++..      ....+.+.++++..++.           ........+|||||||||
T Consensus       463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qri  535 (1284)
T 3g5u_A          463 REIIGVVSQEPVLFAT-TIAENIRYGRE------DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI  535 (1284)
T ss_dssp             HHHEEEECSSCCCCSS-CHHHHHHHHCS------SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHH
T ss_pred             HhheEEEcCCCccCCc-cHHHHHhcCCC------CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHH
Confidence            8889999999998865 99999987521      11233455555554432           223345668999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++||||||||+||+.+
T Consensus       536 aiARal~~~p~iliLDEpts~LD~~~  561 (1284)
T 3g5u_A          536 AIARALVRNPKILLLDEATSALDTES  561 (1284)
T ss_dssp             HHHHHHHHCCSEEEEESTTCSSCHHH
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHH
Confidence            99999999999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.97  E-value=1.4e-32  Score=243.27  Aligned_cols=137  Identities=15%  Similarity=0.167  Sum_probs=119.0

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI   94 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l   94 (178)
                      .|+++||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|+|.+           +..++|+||++..
T Consensus       371 ~l~~~~~~v~~Ge----i~~i~G~NGsGKS-------TLlk~l~Gl~~p~~G~I~~-----------~~~i~~v~Q~~~~  428 (607)
T 3bk7_A          371 KLEVEPGEIRKGE----VIGIVGPNGIGKT-------TFVKMLAGVEEPTEGKVEW-----------DLTVAYKPQYIKA  428 (607)
T ss_dssp             EEEECCEEEETTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSBSCCCC-----------CCCEEEECSSCCC
T ss_pred             EEEecccccCCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEE-----------eeEEEEEecCccC
Confidence            5788888899999    8889999999999       9999999999999999965           2369999999887


Q ss_pred             CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860           95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus        95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                      ++.+||.+++....... .   ...+++.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus       429 ~~~~tv~e~~~~~~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~  504 (607)
T 3bk7_A          429 EYEGTVYELLSKIDSSK-L---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV  504 (607)
T ss_dssp             CCSSBHHHHHHHHHHHH-H---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred             CCCCcHHHHHHhhhccC-C---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCH
Confidence            78899998876541111 0   1245688899999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy860          175 YNT  177 (178)
Q Consensus       175 ~~~  177 (178)
                      .++
T Consensus       505 ~~~  507 (607)
T 3bk7_A          505 EQR  507 (607)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.97  E-value=9.4e-33  Score=241.54  Aligned_cols=139  Identities=19%  Similarity=0.069  Sum_probs=119.1

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI   94 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l   94 (178)
                      .|+.+||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.+++.          .++|+||+...
T Consensus       283 ~l~~~~~~i~~Ge----i~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~~~----------~i~~~~q~~~~  341 (538)
T 3ozx_A          283 QLVVDNGEAKEGE----IIGILGPNGIGKT-------TFARILVGEITADEGSVTPEKQ----------ILSYKPQRIFP  341 (538)
T ss_dssp             EEEECCEEEETTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSBCCEESSCC----------CEEEECSSCCC
T ss_pred             EEEeccceECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCe----------eeEeechhccc
Confidence            4666788899999    8889999999999       9999999999999999976543          68999999777


Q ss_pred             CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860           95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus        95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                      .+..||.+++.+..  ... .......++++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus       342 ~~~~tv~~~l~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~  418 (538)
T 3ozx_A          342 NYDGTVQQYLENAS--KDA-LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV  418 (538)
T ss_dssp             CCSSBHHHHHHHHC--SST-TCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred             ccCCCHHHHHHHhh--hhc-cchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence            77899999987632  111 112345678899999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy860          175 YNT  177 (178)
Q Consensus       175 ~~~  177 (178)
                      .++
T Consensus       419 ~~~  421 (538)
T 3ozx_A          419 EER  421 (538)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.97  E-value=1.5e-32  Score=260.41  Aligned_cols=154  Identities=16%  Similarity=0.155  Sum_probs=128.2

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+.. ...++|+||||+|++||    ..+|+|++|||||       ||++.+.|+.+|++|+|.++|.++.+  ...+
T Consensus       423 F~Y~~~-~~~~vL~~isl~i~~G~----~vaivG~sGsGKS-------Tll~ll~~~~~~~~G~I~idG~~i~~~~~~~l  490 (1321)
T 4f4c_A          423 FTYPSR-PDVPILRGMNLRVNAGQ----TVALVGSSGCGKS-------TIISLLLRYYDVLKGKITIDGVDVRDINLEFL  490 (1321)
T ss_dssp             ECCSSS-TTSCSEEEEEEEECTTC----EEEEEECSSSCHH-------HHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred             eeCCCC-CCCceeeceEEeecCCc----EEEEEecCCCcHH-------HHHHHhccccccccCcccCCCccchhccHHHH
Confidence            667432 23489999999999999    8899999999999       99999999999999999999999976  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccC----cCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHR----VSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~----~~~~LSgGqkQRv  150 (178)
                      |+.|+||+|++.+| +-|++||+.++.     + ....+++.++++..++.+.       .+.    .-.+||||||||+
T Consensus       491 r~~i~~v~Q~~~Lf-~~TI~eNI~~g~-----~-~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi  563 (1321)
T 4f4c_A          491 RKNVAVVSQEPALF-NCTIEENISLGK-----E-GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI  563 (1321)
T ss_dssp             HHHEEEECSSCCCC-SEEHHHHHHTTC-----T-TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred             hhcccccCCcceee-CCchhHHHhhhc-----c-cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence            88999999999886 569999998641     2 1235567777777665332       222    3457999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +||||+..+|+++|||||||+||+.+
T Consensus       564 aiARAl~~~~~IliLDE~tSaLD~~t  589 (1321)
T 4f4c_A          564 AIARALVRNPKILLLDEATSALDAES  589 (1321)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCTTT
T ss_pred             HHHHHHccCCCEEEEecccccCCHHH
Confidence            99999999999999999999999976

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.97  E-value=1.8e-32  Score=239.77  Aligned_cols=137  Identities=16%  Similarity=0.178  Sum_probs=118.2

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI   94 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l   94 (178)
                      .|+++||+|+.||    +.+|+|+||||||       ||++++.|+.+|++|+|.+           ...|+|+||++..
T Consensus       301 ~l~~~~~~i~~Ge----~~~i~G~NGsGKS-------TLlk~l~Gl~~p~~G~i~~-----------~~~i~~v~Q~~~~  358 (538)
T 1yqt_A          301 RLEVEPGEIKKGE----VIGIVGPNGIGKT-------TFVKMLAGVEEPTEGKIEW-----------DLTVAYKPQYIKA  358 (538)
T ss_dssp             EEEECCEEEETTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSBCCCCC-----------CCCEEEECSSCCC
T ss_pred             EEEeCccccCCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEE-----------CceEEEEecCCcC
Confidence            4778888899999    8889999999999       9999999999999999965           2369999999887


Q ss_pred             CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860           95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus        95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                      .+.+||.+++....... .   ...+++.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus       359 ~~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~  434 (538)
T 1yqt_A          359 DYEGTVYELLSKIDASK-L---NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV  434 (538)
T ss_dssp             CCSSBHHHHHHHHHHHH-H---TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred             CCCCcHHHHHHhhhccC-C---CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence            78899988876531111 1   1245688899999999889999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy860          175 YNT  177 (178)
Q Consensus       175 ~~~  177 (178)
                      .++
T Consensus       435 ~~~  437 (538)
T 1yqt_A          435 EQR  437 (538)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.97  E-value=2.1e-32  Score=258.75  Aligned_cols=148  Identities=17%  Similarity=0.100  Sum_probs=123.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      .++|+||||+|++||    ..+|+|+||+|||       ||++.+.|+.+|++|+|.++|.++..  ...+|++++||||
T Consensus      1046 ~~~l~~vsl~i~~Ge----~v~ivG~sGsGKS-------Tl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A         1046 IPVLQGLSLEVKKGQ----TLALVGSSGCGKS-------TVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114 (1284)
T ss_dssp             CCSBSSCCEEECSSS----EEEEECSSSTTHH-------HHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEES
T ss_pred             CeeecceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECC
Confidence            369999999999999    8889999999999       99999999999999999999999865  4677889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIGD  159 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~~  159 (178)
                      ++.++ +.|++||+.++..    ......+.+.+.++..++.+..++           ...+|||||||||+|||||+.+
T Consensus      1115 ~~~l~-~~ti~eNi~~~~~----~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A         1115 EPILF-DCSIAENIAYGDN----SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp             SCCCC-SSBHHHHHTCCCS----SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             CCccc-cccHHHHHhccCC----CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence            99776 5799999975321    111224456666777666443333           2358999999999999999999


Q ss_pred             CCeEEeeCCCCCCCCCC
Q psy860          160 RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       160 P~~lllDEPt~gLD~~~  176 (178)
                      |++|||||||||||+.+
T Consensus      1190 p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A         1190 PHILLLDEATSALDTES 1206 (1284)
T ss_dssp             CSSEEEESCSSSCCHHH
T ss_pred             CCEEEEeCCcccCCHHH
Confidence            99999999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.97  E-value=1.3e-31  Score=237.14  Aligned_cols=143  Identities=13%  Similarity=0.052  Sum_probs=118.1

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc---------cccccccccH----Hh
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN---------SLLMTNIMHL----FQ   80 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i---------~~~g~~~~~~----~~   80 (178)
                      .+|++|| +|++||    +.+|+|+||+|||       ||++.+.|+.+|++|++         .++|.++...    ..
T Consensus       106 ~~l~~vs-~i~~Ge----~~~LiG~NGsGKS-------TLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~  173 (607)
T 3bk7_A          106 FVLYRLP-IVKDGM----VVGIVGPNGTGKT-------TAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN  173 (607)
T ss_dssp             CEEECCC-CCCTTS----EEEEECCTTSSHH-------HHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred             eeeCCCC-CCCCCC----EEEEECCCCChHH-------HHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence            4899999 999999    8889999999999       99999999999999996         4566655432    11


Q ss_pred             hccceEEecCCCCCCC---CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh
Q psy860           81 YLSGIGYCPQFNGINE---HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        81 ~~~~ig~v~Q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      .+..+++++|+..+.+   ..|+.|++..         .+..++++++++.+++.+..++++.+|||||||||+|||||+
T Consensus       174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~---------~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~  244 (607)
T 3bk7_A          174 GEIRPVVKPQYVDLLPKAVKGKVRELLKK---------VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL  244 (607)
T ss_dssp             TSCCCEEECSCGGGGGGTCCSBHHHHHHH---------TCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred             hhcceEEeechhhhchhhccccHHHHhhh---------hHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh
Confidence            2346889999753322   2389988753         112345888999999999999999999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~~  177 (178)
                      ++|++||||||||+||+.++
T Consensus       245 ~~P~lLlLDEPTs~LD~~~~  264 (607)
T 3bk7_A          245 RKAHFYFFDEPSSYLDIRQR  264 (607)
T ss_dssp             SCCSEEEEECTTTTCCHHHH
T ss_pred             cCCCEEEEECCcccCCHHHH
Confidence            99999999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-31  Score=236.17  Aligned_cols=141  Identities=13%  Similarity=0.045  Sum_probs=116.9

Q ss_pred             ccccchhhhccHHHHH--HHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEML--ECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~--~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      .+++++||++..|++.  + +.+|+|+||+|||       ||++.+.|+.+|++|+..      .     +.+++|+||+
T Consensus       361 ~~l~~vsl~v~~G~~~~GE-iv~iiG~NGsGKS-------TLlk~l~Gl~~p~~G~~~------~-----~~~i~~~~q~  421 (608)
T 3j16_B          361 KTQGDFVLNVEEGEFSDSE-ILVMMGENGTGKT-------TLIKLLAGALKPDEGQDI------P-----KLNVSMKPQK  421 (608)
T ss_dssp             EECSSCEEEECCEECCTTC-EEEEESCTTSSHH-------HHHHHHHTSSCCSBCCCC------C-----SCCEEEECSS
T ss_pred             cccCceEEEEecCccccce-EEEEECCCCCcHH-------HHHHHHhcCCCCCCCcCc------c-----CCcEEEeccc
Confidence            5789999999999410  0 5789999999999       999999999999999731      1     2369999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      ....+..||.+++...  ...  .....+.+.++++.+++.+.+++++.+|||||||||+|||||+++|++|||||||+|
T Consensus       422 ~~~~~~~tv~e~~~~~--~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~g  497 (608)
T 3j16_B          422 IAPKFPGTVRQLFFKK--IRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAY  497 (608)
T ss_dssp             CCCCCCSBHHHHHHHH--CSS--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             ccccCCccHHHHHHHH--hhc--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            8777778999976432  221  112345678899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       498 LD~~~~  503 (608)
T 3j16_B          498 LDSEQR  503 (608)
T ss_dssp             CCHHHH
T ss_pred             CCHHHH
Confidence            998653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.97  E-value=1.7e-31  Score=233.71  Aligned_cols=142  Identities=13%  Similarity=0.074  Sum_probs=117.0

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc---------cccccccccHH----h
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN---------SLLMTNIMHLF----Q   80 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i---------~~~g~~~~~~~----~   80 (178)
                      .++++|| +|++||    +.+|+|+||||||       ||++++.|+.+|++|++         .++|.++....    .
T Consensus        36 ~~l~~vs-~i~~Ge----~~~LvG~NGaGKS-------TLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~  103 (538)
T 1yqt_A           36 FVLYRLP-VVKEGM----VVGIVGPNGTGKS-------TAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN  103 (538)
T ss_dssp             CEEECCC-CCCTTS----EEEEECCTTSSHH-------HHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred             ccccCcC-cCCCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence            4899999 999999    8889999999999       99999999999999996         45666554321    1


Q ss_pred             hccceEEecCCCCCCCC---CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh
Q psy860           81 YLSGIGYCPQFNGINEH---LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        81 ~~~~ig~v~Q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      .+.++++++|+..+++.   .++.+++..    .     +..+++.++++.+|+.+..++++.+|||||||||+|||||+
T Consensus       104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~-----~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~  174 (538)
T 1yqt_A          104 GEIRPVVKPQYVDLIPKAVKGKVIELLKK----A-----DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL  174 (538)
T ss_dssp             TSCCCEEECSCGGGSGGGCCSBHHHHHHH----H-----CSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhhhcchhhhccHHHHHhh----h-----hHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh
Confidence            23468999997543332   378887742    1     11345788999999999899999999999999999999999


Q ss_pred             CCCCeEEeeCCCCCCCCCC
Q psy860          158 GDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       158 ~~P~~lllDEPt~gLD~~~  176 (178)
                      .+|++||||||||+||+.+
T Consensus       175 ~~P~lLlLDEPTs~LD~~~  193 (538)
T 1yqt_A          175 RNATFYFFDEPSSYLDIRQ  193 (538)
T ss_dssp             SCCSEEEEESTTTTCCHHH
T ss_pred             cCCCEEEEECCcccCCHHH
Confidence            9999999999999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.96  E-value=3.8e-30  Score=230.09  Aligned_cols=152  Identities=14%  Similarity=0.115  Sum_probs=92.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHh---------------------hhhhccCCcccccc---
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL---------------------GSAIRFSPFQAAQN---   68 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll---------------------~~~~~~~~~~~g~i---   68 (178)
                      .++|+||||+|++||    +.+|+|+||||||       ||+                     +.+.++..|+.+.+   
T Consensus        31 ~~~L~~vsl~i~~Ge----~~~liGpNGaGKS-------TLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~   99 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGK----LVVLTGLSGSGKS-------SLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGL   99 (670)
T ss_dssp             STTCCSEEEEEETTS----EEEEECSTTSSHH-------HHHTTTHHHHHHHHHHTC--------------CCCSEEESC
T ss_pred             ccceeccEEEECCCC----EEEEECCCCCCHH-------HHhcccccccccccccccchhhhhhhhcccccCCccceecc
Confidence            468999999999999    8889999999999       776                     56667777774443   


Q ss_pred             ----cccccccccHHhhccceEEecCCCC-------------------CCCCCCHHHHHHHHHHhcCC--CCCChh----
Q psy860           69 ----SLLMTNIMHLFQYLSGIGYCPQFNG-------------------INEHLTAQEMLECFSALRGI--PGVKSG----  119 (178)
Q Consensus        69 ----~~~g~~~~~~~~~~~~ig~v~Q~~~-------------------l~~~ltv~e~l~~~~~~~~~--~~~~~~----  119 (178)
                          .+++.....  ..++.+++++|.+.                   .++.+||.||+.++......  ......    
T Consensus       100 ~~~i~~~~~~~~~--~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~  177 (670)
T 3ux8_A          100 SPAISIDQKTTSR--NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILR  177 (670)
T ss_dssp             CCEEEESSCC-------CCBHHHHTTCC-------------------------CC-------------------------
T ss_pred             ccceEecCchhhc--cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHH
Confidence                333332211  12345666666432                   24567899998774322110  000000    


Q ss_pred             --HHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCCC--eEEeeCCCCCCCCCCC
Q psy860          120 --PIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDRD--DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       120 --~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P~--~lllDEPt~gLD~~~~  177 (178)
                        .....+++.+||.+. .++++.+|||||||||+|||||+++|+  +|||||||+||||.++
T Consensus       178 ~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~  240 (670)
T 3ux8_A          178 EIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN  240 (670)
T ss_dssp             -CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGH
T ss_pred             HHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHH
Confidence              111235888999764 689999999999999999999999998  9999999999999764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.95  E-value=8.6e-29  Score=227.41  Aligned_cols=144  Identities=19%  Similarity=0.063  Sum_probs=109.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|+||||+|+.||    +.+|+|+||+|||       ||++.+.|+.+|++|+|++++..         .++|++|++
T Consensus       686 ~~iL~dVSl~I~~Ge----ivaIiGpNGSGKS-------TLLklLaGll~P~sG~I~~~~~~---------~I~yv~Q~~  745 (986)
T 2iw3_A          686 KPQITDINFQCSLSS----RIAVIGPNGAGKS-------TLINVLTGELLPTSGEVYTHENC---------RIAYIKQHA  745 (986)
T ss_dssp             SCSEEEEEEEEETTC----EEEECSCCCHHHH-------HHHHHHTTSSCCSEEEEEECTTC---------CEEEECHHH
T ss_pred             ceeeeccEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEEcCcc---------ceEeeccch
Confidence            468999999999999    8889999999999       99999999999999999887521         245555432


Q ss_pred             C----CCCCCCHHHHHHHHH------------------------------------------------------------
Q psy860           93 G----INEHLTAQEMLECFS------------------------------------------------------------  108 (178)
Q Consensus        93 ~----l~~~ltv~e~l~~~~------------------------------------------------------------  108 (178)
                      .    .....|+.+++.+..                                                            
T Consensus       746 ~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~E  825 (986)
T 2iw3_A          746 FAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGE  825 (986)
T ss_dssp             HHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhh
Confidence            1    011223333322110                                                            


Q ss_pred             -----------------------------------------HhcCCCCCChhHHHHHHHHHcCCCc-c-ccCcCCCCChH
Q psy860          109 -----------------------------------------ALRGIPGVKSGPIIDYWIDLLGLTE-Y-RHRVSGRYSGG  145 (178)
Q Consensus       109 -----------------------------------------~~~~~~~~~~~~~~~~~l~~~~L~~-~-~~~~~~~LSgG  145 (178)
                                                               ...+.......++++++++.+|+.+ . .++++.+||||
T Consensus       826 Ni~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGG  905 (986)
T 2iw3_A          826 NIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGG  905 (986)
T ss_dssp             STTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHH
T ss_pred             hhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHH
Confidence                                                     0011122233567889999999974 4 68899999999


Q ss_pred             HHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          146 NKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       146 qkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      |||||+|||||+++|++|||||||+|||+.+
T Consensus       906 QkQRVaLArAL~~~P~LLLLDEPT~gLD~~s  936 (986)
T 2iw3_A          906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS  936 (986)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECGGGTCCHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence            9999999999999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.95  E-value=1.5e-28  Score=225.71  Aligned_cols=137  Identities=18%  Similarity=0.078  Sum_probs=112.3

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |...+|+||||+|+.||    +.+|+|+||+|||       ||++++.+      |.+  +|.+..  .  ..+++|++|
T Consensus       446 g~~~iL~~vsl~I~~Ge----~v~LiGpNGsGKS-------TLLk~Lag------G~i--~g~~~~--~--~~~~~~v~q  502 (986)
T 2iw3_A          446 GAKILLNKTQLRLKRAR----RYGICGPNGCGKS-------TLMRAIAN------GQV--DGFPTQ--E--ECRTVYVEH  502 (986)
T ss_dssp             TTEEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHHH------TCS--TTCCCT--T--TSCEEETTC
T ss_pred             CCEEeEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhC------CCc--CCCccc--c--ceeEEEEcc
Confidence            44579999999999999    8889999999999       99999984      333  332221  1  124789999


Q ss_pred             CC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           91 FN-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        91 ~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      +. .+++.+|+.+++.+  ...+    . ++++.++++.+|+. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus       503 ~~~~~~~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP  575 (986)
T 2iw3_A          503 DIDGTHSDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP  575 (986)
T ss_dssp             CCCCCCTTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred             cccccccCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            85 67889999999865  1111    1 56789999999995 688999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+|||+.++
T Consensus       576 Ts~LD~~~~  584 (986)
T 2iw3_A          576 TNHLDTVNV  584 (986)
T ss_dssp             TTTCCHHHH
T ss_pred             ccCCCHHHH
Confidence            999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.94  E-value=4.1e-28  Score=212.22  Aligned_cols=141  Identities=18%  Similarity=0.098  Sum_probs=107.3

Q ss_pred             ccchhhh-ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc-----------cccccccccHH-h--
Q psy860           16 FNGINEH-LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN-----------SLLMTNIMHLF-Q--   80 (178)
Q Consensus        16 ~~~v~~~-~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i-----------~~~g~~~~~~~-~--   80 (178)
                      |+--.+. +++||    +.+|+|+||||||       ||++++.|+.+|++|++           .+.|.++.... +  
T Consensus        14 f~l~~l~~~~~Ge----i~gLiGpNGaGKS-------TLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~   82 (538)
T 3ozx_A           14 FKLFGLPTPKNNT----ILGVLGKNGVGKT-------TVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY   82 (538)
T ss_dssp             CEEECCCCCCTTE----EEEEECCTTSSHH-------HHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred             eeecCCCCCCCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence            3444453 45899    8889999999999       99999999999999998           56676654321 1  


Q ss_pred             -hccceEEecCCCCCC---CCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH
Q psy860           81 -YLSGIGYCPQFNGIN---EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL  156 (178)
Q Consensus        81 -~~~~ig~v~Q~~~l~---~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL  156 (178)
                       ....+...+|.....   ...++.+++...         +.+++++++++.+++.+..++++.+|||||||||+|||||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL  153 (538)
T 3ozx_A           83 SNELKIVHKIQYVEYASKFLKGTVNEILTKI---------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASL  153 (538)
T ss_dssp             TTCCCEEEECSCTTGGGTTCCSBHHHHHHHH---------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             hcccchhhccchhhhhhhhccCcHHHHhhcc---------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence             112344455543221   234777654321         1234578899999999999999999999999999999999


Q ss_pred             hCCCCeEEeeCCCCCCCCCC
Q psy860          157 IGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       157 ~~~P~~lllDEPt~gLD~~~  176 (178)
                      +++|++||||||||+||+.+
T Consensus       154 ~~~p~illlDEPts~LD~~~  173 (538)
T 3ozx_A          154 LREADVYIFDQPSSYLDVRE  173 (538)
T ss_dssp             HSCCSEEEEESTTTTCCHHH
T ss_pred             HcCCCEEEEECCcccCCHHH
Confidence            99999999999999999865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.3e-27  Score=209.91  Aligned_cols=143  Identities=16%  Similarity=0.162  Sum_probs=107.1

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc-----------cccccccccHH-h-h
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN-----------SLLMTNIMHLF-Q-Y   81 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i-----------~~~g~~~~~~~-~-~   81 (178)
                      .+++++ .+++||    +.+|+|+||+|||       ||++.+.|+.+|++|++           .+.|..+.... . .
T Consensus        93 ~l~~l~-~~~~Ge----i~~LvGpNGaGKS-------TLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (608)
T 3j16_B           93 KLHRLP-TPRPGQ----VLGLVGTNGIGKS-------TALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML  160 (608)
T ss_dssp             EEECCC-CCCTTS----EEEEECCTTSSHH-------HHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             eecCCC-CCCCCC----EEEEECCCCChHH-------HHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence            566666 689999    8889999999999       99999999999999998           34444433221 1 1


Q ss_pred             ccc--eEEecCCCCC------CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHH
Q psy860           82 LSG--IGYCPQFNGI------NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTA  153 (178)
Q Consensus        82 ~~~--ig~v~Q~~~l------~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IA  153 (178)
                      .+.  ..+.+|....      .+..++.+++..    .   ..+..++++++++.+++.+..++++.+|||||||||+||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~----~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iA  233 (608)
T 3j16_B          161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL----R---MEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIG  233 (608)
T ss_dssp             HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH----H---CCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHH
T ss_pred             HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh----h---hhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHH
Confidence            122  2334443221      112244444332    1   123456799999999999999999999999999999999


Q ss_pred             HHHhCCCCeEEeeCCCCCCCCCC
Q psy860          154 MALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       154 raL~~~P~~lllDEPt~gLD~~~  176 (178)
                      |||+++|++||||||||+||+.+
T Consensus       234 raL~~~p~llllDEPts~LD~~~  256 (608)
T 3j16_B          234 MSCVQEADVYMFDEPSSYLDVKQ  256 (608)
T ss_dssp             HHHHSCCSEEEEECTTTTCCHHH
T ss_pred             HHHHhCCCEEEEECcccCCCHHH
Confidence            99999999999999999999865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.93  E-value=6.6e-27  Score=209.11  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=60.6

Q ss_pred             CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCC---eEEeeCCCCCC
Q psy860           97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRD---DGFQKLPFSSQ  172 (178)
Q Consensus        97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~---~lllDEPt~gL  172 (178)
                      .+|+.|++.++..      ....+++.+.++.+++. ...++++.+|||||||||+|||||+++|+   +|||||||+||
T Consensus       504 ~ltv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~L  577 (670)
T 3ux8_A          504 DMTVEDALDFFAS------IPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL  577 (670)
T ss_dssp             TSBHHHHHHHTTT------CHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTC
T ss_pred             hCCHHHHHHHHHH------hhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCC
Confidence            4788888876421      12234567788999996 45689999999999999999999999875   99999999999


Q ss_pred             CCCCC
Q psy860          173 NLYNT  177 (178)
Q Consensus       173 D~~~~  177 (178)
                      |+.++
T Consensus       578 D~~~~  582 (670)
T 3ux8_A          578 HVDDI  582 (670)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98653

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.4e-27  Score=205.31  Aligned_cols=136  Identities=14%  Similarity=-0.016  Sum_probs=112.1

Q ss_pred             ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc-c-ccccccccccHHhhccceEEecCCCC
Q psy860           16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA-Q-NSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g-~-i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      +.++||+++.|+    +.+|+|+||||||       ||++++.|+.+|++| + +.+++.       .+++++|+||+..
T Consensus       128 y~~vsl~i~~Ge----~v~IvGpnGsGKS-------TLlr~L~Gl~~p~~G~~pI~vdg~-------~~~~i~~vpq~~~  189 (460)
T 2npi_A          128 LEKIRMSNFEGP----RVVIVGGSQTGKT-------SLSRTLCSYALKFNAYQPLYINLD-------PQQPIFTVPGCIS  189 (460)
T ss_dssp             HHHHHHHSSSCC----CEEEEESTTSSHH-------HHHHHHHHTTHHHHCCCCEEEECC-------TTSCSSSCSSCCE
T ss_pred             hhcCceEeCCCC----EEEEECCCCCCHH-------HHHHHHhCcccccCCceeEEEcCC-------ccCCeeeeccchh
Confidence            348999999999    8889999999999       999999999999999 8 988872       3668999999974


Q ss_pred             ---CCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHH--HhCCCCe----E
Q psy860           94 ---INEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMA--LIGDRDD----G  163 (178)
Q Consensus        94 ---l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAra--L~~~P~~----l  163 (178)
                         +...+|+++|+ +.... .+   ....+++.++++.+|+.+..+  +.+|||||||||+||||  |+.+|++    |
T Consensus       190 l~~~~~~~tv~eni-~~~~~~~~---~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGL  263 (460)
T 2npi_A          190 ATPISDILDAQLPT-WGQSLTSG---ATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGC  263 (460)
T ss_dssp             EEECCSCCCTTCTT-CSCBCBSS---CCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred             hcccccccchhhhh-cccccccC---cchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence               34567888887 43221 11   112234556778899987766  88999999999999999  9999999    9


Q ss_pred             EeeC-CCCCCCCC
Q psy860          164 FQKL-PFSSQNLY  175 (178)
Q Consensus       164 llDE-Pt~gLD~~  175 (178)
                      |||| ||++||+.
T Consensus       264 lLDEpPts~LD~~  276 (460)
T 2npi_A          264 IVDTPSISQLDEN  276 (460)
T ss_dssp             EEECCCGGGSCSS
T ss_pred             EEeCCcccccChh
Confidence            9999 99999986

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.89  E-value=2.1e-24  Score=197.46  Aligned_cols=146  Identities=14%  Similarity=0.124  Sum_probs=103.9

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh-cc----C---Ccccc-------------cccccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI-RF----S---PFQAA-------------QNSLLM   72 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~-~~----~---~~~~g-------------~i~~~g   72 (178)
                      .+|+||||+|+.||    +.+|.|+||+|||       ||++.++ +.    .   .+..|             .+.+++
T Consensus       638 ~~Lk~Vsl~I~~Ge----iv~I~G~nGSGKS-------TLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq  706 (972)
T 2r6f_A          638 HNLKNVSVKIPLGT----FVAVTGVSGSGKS-------TLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQ  706 (972)
T ss_dssp             SSCCSEEEEEESSS----EEECCBCTTSSHH-------HHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECS
T ss_pred             cccccceEEEcCCC----EEEEEcCCCCCHH-------HHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcC
Confidence            47999999999999    8889999999999       8887753 11    1   11223             245555


Q ss_pred             ccccc-----H----------Hh------hccceEEecCCCCCCC-----------------------------------
Q psy860           73 TNIMH-----L----------FQ------YLSGIGYCPQFNGINE-----------------------------------   96 (178)
Q Consensus        73 ~~~~~-----~----------~~------~~~~ig~v~Q~~~l~~-----------------------------------   96 (178)
                      .++..     +          .+      ..+.+||++|...+.+                                   
T Consensus       707 ~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r  786 (972)
T 2r6f_A          707 SPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKR  786 (972)
T ss_dssp             SCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCC
T ss_pred             cccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccccccc
Confidence            55421     0          00      1134688887543211                                   


Q ss_pred             -------------------CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHH
Q psy860           97 -------------------HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMAL  156 (178)
Q Consensus        97 -------------------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL  156 (178)
                                         .+|+.|++.++..   .   ...+++.++++.++|.. ..++++.+|||||||||+||+||
T Consensus       787 ~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~---~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL  860 (972)
T 2r6f_A          787 YNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I---PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL  860 (972)
T ss_dssp             BCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C---HHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c---hhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHH
Confidence                               3466676655321   1   11234678899999986 78999999999999999999999


Q ss_pred             hCCC---CeEEeeCCCCCCCCCC
Q psy860          157 IGDR---DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       157 ~~~P---~~lllDEPt~gLD~~~  176 (178)
                      +.+|   +++||||||+|||+.+
T Consensus       861 ~~~p~~p~lLILDEPTsGLD~~~  883 (972)
T 2r6f_A          861 HRRSNGRTLYILDEPTTGLHVDD  883 (972)
T ss_dssp             SSCCCSCEEEEEECTTTTCCHHH
T ss_pred             hcCCCCCCEEEEECCCCCCCHHH
Confidence            9875   9999999999999865

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.88  E-value=1.1e-23  Score=192.96  Aligned_cols=73  Identities=19%  Similarity=0.140  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCC---CeEEeeCCCCCCC
Q psy860           98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDR---DDGFQKLPFSSQN  173 (178)
Q Consensus        98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P---~~lllDEPt~gLD  173 (178)
                      +|+.|++.++..      .....++.++|+.+||.. ..++++.+|||||||||+|||||+.+|   ++|||||||+|||
T Consensus       767 ~tv~eal~f~~~------~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD  840 (916)
T 3pih_A          767 MTVDEALEFFKN------IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH  840 (916)
T ss_dssp             SBHHHHHHHTTT------CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCC
T ss_pred             CCHHHHHHHHhc------chhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCC
Confidence            567777766421      122356778999999974 468899999999999999999999876   7999999999999


Q ss_pred             CCC
Q psy860          174 LYN  176 (178)
Q Consensus       174 ~~~  176 (178)
                      +.+
T Consensus       841 ~~~  843 (916)
T 3pih_A          841 FED  843 (916)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.88  E-value=3.1e-24  Score=195.28  Aligned_cols=58  Identities=14%  Similarity=-0.005  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCC---CCeEEeeCCCCCCCCCC
Q psy860          119 GPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGD---RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       119 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~---P~~lllDEPt~gLD~~~  176 (178)
                      .+++.++++.++|.. ..++++.+|||||||||.||+||+.+   |++|||||||+|||+.+
T Consensus       707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~  768 (842)
T 2vf7_A          707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD  768 (842)
T ss_dssp             HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH
Confidence            346788999999986 46899999999999999999999996   79999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.88  E-value=8.9e-26  Score=175.69  Aligned_cols=118  Identities=14%  Similarity=0.068  Sum_probs=84.2

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP   89 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~   89 (178)
                      |...+|++|    ++||    +.+|+|+||||||       ||++++.|+ +|++|+|..  .++.. ..+.++.+||+|
T Consensus        11 g~~~~l~~i----~~Ge----~~~liG~nGsGKS-------TLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~   72 (208)
T 3b85_A           11 GQKHYVDAI----DTNT----IVFGLGPAGSGKT-------YLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLP   72 (208)
T ss_dssp             HHHHHHHHH----HHCS----EEEEECCTTSSTT-------HHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSC
T ss_pred             hHHHHHHhc----cCCC----EEEEECCCCCCHH-------HHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEec
Confidence            334688885    7899    8889999999999       999999999 999999842  22221 123567899999


Q ss_pred             CCCCCCCCCCHHHHH-HH----HHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           90 QFNGINEHLTAQEML-EC----FSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l-~~----~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      |++        .||+ .+    .......   ...++++++++. ++             ||||||+|||||+.+|++||
T Consensus        73 q~~--------~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lll  127 (208)
T 3b85_A           73 GTL--------NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVI  127 (208)
T ss_dssp             C--------------CTTTHHHHHHHTTT---SCTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEE
T ss_pred             CCH--------HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEE
Confidence            986        2333 11    1111111   123456677765 44             99999999999999999999


Q ss_pred             eeCCCCC
Q psy860          165 QKLPFSS  171 (178)
Q Consensus       165 lDEPt~g  171 (178)
                      |||||+|
T Consensus       128 LDEPts~  134 (208)
T 3b85_A          128 LDEAQNT  134 (208)
T ss_dssp             ECSGGGC
T ss_pred             EeCCccc
Confidence            9999998

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.87  E-value=1.7e-25  Score=189.85  Aligned_cols=139  Identities=11%  Similarity=0.044  Sum_probs=111.1

Q ss_pred             cccccchhhhccHHHHHHH----------------hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc
Q psy860           13 CPQFNGINEHLTAQEMLEC----------------FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM   76 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~----------------~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~   76 (178)
                      ..++++|||+|+.|+.-+.                +.+|+|+||+|||       ||++.+.|+.+|++|.+.+++.+..
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKS-------TLln~L~Gl~~p~~GsI~~~g~~~t  108 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKS-------SFINTLRGIGNEEEGAAKTGVVEVT  108 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHH-------HHHHHHHTCCTTSTTSCCCCC----
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHH-------HHHHHHhCCCCccCceEEECCeecc
Confidence            3589999999999994333                5789999999999       9999999999999999998887542


Q ss_pred             cHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChH--HHHHHHHHH
Q psy860           77 HLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGG--NKRKLSTAM  154 (178)
Q Consensus        77 ~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG--qkQRv~IAr  154 (178)
                           +  .++++|++ .++++|+.|+..+..         .+..++++++.+++.+... .+. ||+|  ||||+.||+
T Consensus       109 -----~--~~~v~q~~-~~~~ltv~D~~g~~~---------~~~~~~~~L~~~~L~~~~~-~~~-lS~G~~~kqrv~la~  169 (413)
T 1tq4_A          109 -----M--ERHPYKHP-NIPNVVFWDLPGIGS---------TNFPPDTYLEKMKFYEYDF-FII-ISATRFKKNDIDIAK  169 (413)
T ss_dssp             -----C--CCEEEECS-SCTTEEEEECCCGGG---------SSCCHHHHHHHTTGGGCSE-EEE-EESSCCCHHHHHHHH
T ss_pred             -----e--eEEecccc-ccCCeeehHhhcccc---------hHHHHHHHHHHcCCCccCC-eEE-eCCCCccHHHHHHHH
Confidence                 2  27899985 467788887653321         1235788999999876533 333 9999  999999999


Q ss_pred             HHhC----------CCCeEEeeCCCCCCCCCCC
Q psy860          155 ALIG----------DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       155 aL~~----------~P~~lllDEPt~gLD~~~~  177 (178)
                      ||++          +|++++|||||+|||+.++
T Consensus       170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~  202 (413)
T 1tq4_A          170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDK  202 (413)
T ss_dssp             HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCH
T ss_pred             HHHhcCCCeEEEEecCcccccCcccccCCHHHH
Confidence            9999          9999999999999999864

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.84  E-value=5.4e-22  Score=167.38  Aligned_cols=151  Identities=10%  Similarity=-0.016  Sum_probs=99.4

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC------------------------------
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP------------------------------   62 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~------------------------------   62 (178)
                      ...++++||++.+|     +.+|+|+||+|||       ||+..+.++..                              
T Consensus        48 f~~l~~v~l~~~~G-----~~~lvG~NGaGKS-------tLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~  115 (415)
T 4aby_A           48 LATITQLELELGGG-----FCAFTGETGAGKS-------IIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEAD  115 (415)
T ss_dssp             ETTEEEEEEECCSS-----EEEEEESHHHHHH-------HHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------C
T ss_pred             ccceeeEEEecCCC-----cEEEECCCCCCHH-------HHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceE
Confidence            46899999999998     4569999999999       88877655543                              


Q ss_pred             --------ccccccccccccccc--HHhhc-cceEEecCCCCCCCCCCHHHHHHHHHHhc--------------------
Q psy860           63 --------FQAAQNSLLMTNIMH--LFQYL-SGIGYCPQFNGINEHLTAQEMLECFSALR--------------------  111 (178)
Q Consensus        63 --------~~~g~i~~~g~~~~~--~~~~~-~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~--------------------  111 (178)
                              +..+.++++|+++..  +.++. ..+++++|+..++.. +..+...+.-...                    
T Consensus       116 ~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~  194 (415)
T 4aby_A          116 SASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSR  194 (415)
T ss_dssp             EEEEEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence                    446778999988764  34444 348999998765432 3322222210000                    


Q ss_pred             --CCCCC--------------------------------------ChhHHHHHHHHHcCCCcc-----------------
Q psy860          112 --GIPGV--------------------------------------KSGPIIDYWIDLLGLTEY-----------------  134 (178)
Q Consensus       112 --~~~~~--------------------------------------~~~~~~~~~l~~~~L~~~-----------------  134 (178)
                        .....                                      ...+.+.+.++.+++...                 
T Consensus       195 ~~~l~~~~~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~  274 (415)
T 4aby_A          195 LERLQASESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGL  274 (415)
T ss_dssp             HHHC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEE
T ss_pred             HHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCC
Confidence              00000                                      011233444555554320                 


Q ss_pred             ------cc-------CcCCC-CChHHHHHHHHHHHHhCCC--CeEEeeCCCCCCCCCC
Q psy860          135 ------RH-------RVSGR-YSGGNKRKLSTAMALIGDR--DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       135 ------~~-------~~~~~-LSgGqkQRv~IAraL~~~P--~~lllDEPt~gLD~~~  176 (178)
                            ..       +++.. |||||||||+||++|+.+|  ++|||||||+|||+.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~  332 (415)
T 4aby_A          275 SDVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA  332 (415)
T ss_dssp             EEEEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHH
T ss_pred             ceEEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHH
Confidence                  00       22223 6999999999999999999  9999999999999864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.84  E-value=2.9e-24  Score=176.45  Aligned_cols=123  Identities=7%  Similarity=-0.061  Sum_probs=101.4

Q ss_pred             ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHH
Q psy860           23 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQE  102 (178)
Q Consensus        23 ~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e  102 (178)
                      ++.|+    +.+|.|+||||||       ||++.+.++.+|+.|.               +.+++|+|++.+++. |+.+
T Consensus        87 ~~~g~----ivgI~G~sGsGKS-------TL~~~L~gll~~~~G~---------------~~v~~v~qd~~~~~~-t~~e  139 (312)
T 3aez_A           87 RPVPF----IIGVAGSVAVGKS-------TTARVLQALLARWDHH---------------PRVDLVTTDGFLYPN-AELQ  139 (312)
T ss_dssp             SCCCE----EEEEECCTTSCHH-------HHHHHHHHHHHTSTTC---------------CCEEEEEGGGGBCCH-HHHH
T ss_pred             CCCCE----EEEEECCCCchHH-------HHHHHHHhhccccCCC---------------CeEEEEecCccCCcc-cHHH
Confidence            77888    7889999999999       9999999998886553               369999999888887 9999


Q ss_pred             HHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860          103 MLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus       103 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                      ++.+.. .++.+.....+.+.++++.++ ....+.++.+|||||+|||++|+|++.+|++||+|||++.+|+
T Consensus       140 ~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~  209 (312)
T 3aez_A          140 RRNLMH-RKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG  209 (312)
T ss_dssp             HTTCTT-CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred             HHHHHH-hcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence            875421 123333344567888899888 5555678889999999999999999999999999999999985

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.84  E-value=1.5e-23  Score=171.45  Aligned_cols=139  Identities=8%  Similarity=-0.024  Sum_probs=113.4

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------Hhh--ccce
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQY--LSGI   85 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~--~~~i   85 (178)
                      .+++.+||+++.|+    +.+++|+||||||       |+++.+.++.+|++|.+.+.+.+....      ..+  +.++
T Consensus        88 ~~~~~l~~~~~~g~----vi~lvG~nGsGKT-------Tll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i  156 (302)
T 3b9q_A           88 NSKTELQLGFRKPA----VIMIVGVNGGGKT-------TSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGC  156 (302)
T ss_dssp             -CCCSCCCCSSSCE----EEEEECCTTSCHH-------HHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTC
T ss_pred             ccccccccccCCCc----EEEEEcCCCCCHH-------HHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCc
Confidence            34567999999999    7889999999999       999999999999999999999886543      223  3579


Q ss_pred             EEecCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC--e
Q psy860           86 GYCPQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD--D  162 (178)
Q Consensus        86 g~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~--~  162 (178)
                      +|++|++. +++.+++++++.++... +.   .     ..+++.+|+.+..++++.+||   |||++||||++.+|+  +
T Consensus       157 ~~v~q~~~~~~~~~~v~e~l~~~~~~-~~---d-----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~l  224 (302)
T 3b9q_A          157 EIVVAEGDKAKAATVLSKAVKRGKEE-GY---D-----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEIL  224 (302)
T ss_dssp             EEECCC--CCCHHHHHHHHHHHHHHT-TC---S-----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEE
T ss_pred             eEEEecCCccCHHHHHHHHHHHHHHc-CC---c-----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeE
Confidence            99999988 88889999999875421 11   1     124567788888888999999   999999999999999  9


Q ss_pred             EEeeCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYN  176 (178)
Q Consensus       163 lllDEPt~gLD~~~  176 (178)
                      |+|| ||+|||+.+
T Consensus       225 LvLD-ptsglD~~~  237 (302)
T 3b9q_A          225 LVLD-GNTGLNMLP  237 (302)
T ss_dssp             EEEE-GGGGGGGHH
T ss_pred             EEEe-CCCCcCHHH
Confidence            9999 999999854

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.82  E-value=5.4e-24  Score=171.62  Aligned_cols=125  Identities=13%  Similarity=0.078  Sum_probs=84.9

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcC
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRG  112 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~  112 (178)
                      .+|+|+||+|||       ||++++.|+..|++|++.++|+++... ..++.++|++|++.+++.+||.|++.++.....
T Consensus         5 v~lvG~nGaGKS-------TLln~L~g~~~~~~G~i~~~g~~i~~~-~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~   76 (270)
T 3sop_A            5 IMVVGQSGLGKS-------TLVNTLFKSQVSRKASSWNREEKIPKT-VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN   76 (270)
T ss_dssp             EEEEESSSSSHH-------HHHHHHHHHHC------------CCCC-CSCCEEEESCC----CCEEEEECCCC--CCSBC
T ss_pred             EEEECCCCCCHH-------HHHHHHhCCCCCCCCccccCCcccCcc-eeeeeeEEEeecCCCcCCceEEechhhhhhccc
Confidence            568999999999       999999999999999999999877432 335679999999999999999999876532221


Q ss_pred             CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860          113 IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLY  175 (178)
Q Consensus       113 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~  175 (178)
                         ....+.+.++++    ....++.+.+|||||||||++|||++.   ++++|||++|||+.
T Consensus        77 ---~~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~l  129 (270)
T 3sop_A           77 ---ENCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPL  129 (270)
T ss_dssp             ---TTCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHH
T ss_pred             ---HHHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHH
Confidence               222334544444    356677888999999999999999886   99999999999974

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.81  E-value=4.8e-22  Score=151.02  Aligned_cols=108  Identities=7%  Similarity=-0.106  Sum_probs=76.5

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH--hhccceEEecCCCCCCCCCCHHHHHHHHHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF--QYLSGIGYCPQFNGINEHLTAQEMLECFSA  109 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~--~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~  109 (178)
                      ..+|+|+||+|||       ||++.+.|+.+     +.++|....+..  ..++.+||++|+..      +.+++ + ..
T Consensus         2 ~i~l~G~nGsGKT-------TLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~-~~   61 (178)
T 1ye8_A            2 KIIITGEPGVGKT-------TLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-F-SS   61 (178)
T ss_dssp             EEEEECCTTSSHH-------HHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETT------CCEEE-E-EE
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCc------HHHHH-H-Hh
Confidence            3568999999999       99999998874     556665543332  44668999999752      11111 0 00


Q ss_pred             hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHH-----HhCCCCeEEeeC--CCCCCCCCC
Q psy860          110 LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMA-----LIGDRDDGFQKL--PFSSQNLYN  176 (178)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAra-----L~~~P~~lllDE--Pt~gLD~~~  176 (178)
                      . ..                .-.+..++++.+||||||||++||+|     ++.+|++++|||  ||++||+..
T Consensus        62 ~-~~----------------~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~  118 (178)
T 1ye8_A           62 K-FF----------------TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF  118 (178)
T ss_dssp             T-TC----------------CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHH
T ss_pred             h-cC----------------CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHH
Confidence            0 00                00135678899999999999999996     999999999999  999999854

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.80  E-value=2.9e-22  Score=167.33  Aligned_cols=136  Identities=8%  Similarity=-0.015  Sum_probs=113.7

Q ss_pred             cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------Hhh--ccceEEe
Q psy860           17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQY--LSGIGYC   88 (178)
Q Consensus        17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~--~~~ig~v   88 (178)
                      +.+||+++.|+    +.+++|+||||||       |+++.+.++.+|++|.+.+.+.++...      ..+  +.+++|+
T Consensus       148 ~~l~l~~~~g~----vi~lvG~nGsGKT-------Tll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v  216 (359)
T 2og2_A          148 TELQLGFRKPA----VIMIVGVNGGGKT-------TSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV  216 (359)
T ss_dssp             CSCCCCSSSSE----EEEEECCTTSCHH-------HHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCcceecCCCe----EEEEEcCCCChHH-------HHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEE
Confidence            57899999999    7889999999999       999999999999999999999887543      222  4579999


Q ss_pred             cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC--eEEe
Q psy860           89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD--DGFQ  165 (178)
Q Consensus        89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~--~lll  165 (178)
                      +|++. +++..++++++.+.... +.   +     ..+++.+|+.+..++++.+||   |||++||||++.+|+  +|+|
T Consensus       217 ~q~~~~~~p~~tv~e~l~~~~~~-~~---d-----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvL  284 (359)
T 2og2_A          217 VAEGDKAKAATVLSKAVKRGKEE-GY---D-----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVL  284 (359)
T ss_dssp             CCSSSSCCHHHHHHHHHHHHHHT-TC---S-----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred             EecccccChhhhHHHHHHHHHhC-CC---H-----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEE
Confidence            99988 88889999999875421 11   1     123566788887888899999   999999999999999  9999


Q ss_pred             eCCCCCCCCCC
Q psy860          166 KLPFSSQNLYN  176 (178)
Q Consensus       166 DEPt~gLD~~~  176 (178)
                      | ||+|||+.+
T Consensus       285 D-pttglD~~~  294 (359)
T 2og2_A          285 D-GNTGLNMLP  294 (359)
T ss_dssp             E-GGGGGGGHH
T ss_pred             c-CCCCCCHHH
Confidence            9 999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.79  E-value=2.8e-21  Score=145.32  Aligned_cols=116  Identities=11%  Similarity=-0.008  Sum_probs=76.6

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC-CC
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI-NE   96 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l-~~   96 (178)
                      ||||+++.||    +.+|+|+||||||       |+++.+.+      |...+      ....+   .|+++|++.- ..
T Consensus         1 ~vsl~i~~ge----i~~l~G~nGsGKS-------Tl~~~~~~------~~~~~------~~d~~---~g~~~~~~~~~~~   54 (171)
T 4gp7_A            1 SMKLTIPELS----LVVLIGSSGSGKS-------TFAKKHFK------PTEVI------SSDFC---RGLMSDDENDQTV   54 (171)
T ss_dssp             CEEEEEESSE----EEEEECCTTSCHH-------HHHHHHSC------GGGEE------EHHHH---HHHHCSSTTCGGG
T ss_pred             CccccCCCCE----EEEEECCCCCCHH-------HHHHHHcc------CCeEE------ccHHH---HHHhcCcccchhh
Confidence            6899999999    8889999999999       99887542      11111      11111   2677777531 11


Q ss_pred             CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860           97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLY  175 (178)
Q Consensus        97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~  175 (178)
                      .-++.+.+..              .+. .....+.....+. ....|+||||||+||||++.+|++++|||||++||+.
T Consensus        55 ~~~~~~~~~~--------------~~~-~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~  117 (171)
T 4gp7_A           55 TGAAFDVLHY--------------IVS-KRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER  117 (171)
T ss_dssp             HHHHHHHHHH--------------HHH-HHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred             HHHHHHHHHH--------------HHH-HHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence            1111222111              111 1223455444443 3456999999999999999999999999999999986

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.79  E-value=1.1e-20  Score=155.29  Aligned_cols=44  Identities=20%  Similarity=0.084  Sum_probs=39.4

Q ss_pred             ccccCcCCCCChHHHHHHHHHHHHh----CCCCeEEeeCCCCCCCCCC
Q psy860          133 EYRHRVSGRYSGGNKRKLSTAMALI----GDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       133 ~~~~~~~~~LSgGqkQRv~IAraL~----~~P~~lllDEPt~gLD~~~  176 (178)
                      +..++++.+||+||||||+||+||+    .+|+++||||||++||+.+
T Consensus       211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~  258 (322)
T 1e69_A          211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYN  258 (322)
T ss_dssp             TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHH
T ss_pred             ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHH
Confidence            3456788999999999999999997    6899999999999999864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.77  E-value=5.1e-22  Score=162.54  Aligned_cols=116  Identities=13%  Similarity=0.022  Sum_probs=90.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++|++|||+|++|+    +.+|+|+||+|||       ||++.+.|+.   +|+|                ++|++|++
T Consensus       113 ~~vL~~vsl~i~~Ge----~vaIvGpsGsGKS-------TLl~lL~gl~---~G~I----------------~~~v~q~~  162 (305)
T 2v9p_A          113 INALKLWLKGIPKKN----CLAFIGPPNTGKS-------MLCNSLIHFL---GGSV----------------LSFANHKS  162 (305)
T ss_dssp             HHHHHHHHHTCTTCS----EEEEECSSSSSHH-------HHHHHHHHHH---TCEE----------------ECGGGTTS
T ss_pred             hhhhccceEEecCCC----EEEEECCCCCcHH-------HHHHHHhhhc---CceE----------------EEEecCcc
Confidence            368999999999999    8889999999999       9999999987   6776                45677877


Q ss_pred             CCCCCCCHHH-HHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           93 GINEHLTAQE-MLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        93 ~l~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      .++. .|+++ |+.+..        ...+.+.+.++.+ +.+..+  ...||||||||   ||||+.+|++||    ||+
T Consensus       163 ~lf~-~ti~~~ni~~~~--------~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~  223 (305)
T 2v9p_A          163 HFWL-ASLADTRAALVD--------DATHACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSN  223 (305)
T ss_dssp             GGGG-GGGTTCSCEEEE--------EECHHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EES
T ss_pred             cccc-ccHHHHhhccCc--------cccHHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECC
Confidence            6654 35654 554310        1112455666664 555445  78999999999   999999999999    999


Q ss_pred             CCCCCC
Q psy860          172 QNLYNT  177 (178)
Q Consensus       172 LD~~~~  177 (178)
                      ||+.++
T Consensus       224 LD~~~~  229 (305)
T 2v9p_A          224 IDVQAE  229 (305)
T ss_dssp             SCSTTC
T ss_pred             CCHHHH
Confidence            999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.75  E-value=1.5e-23  Score=163.69  Aligned_cols=139  Identities=14%  Similarity=0.003  Sum_probs=90.2

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEecCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCPQF   91 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~Q~   91 (178)
                      -|+||||+|++|+    +.+|+||||||||       ||++.+.|+. |  |.+.+ +.+....   ...+++++|+||+
T Consensus        12 ~l~~isl~i~~G~----~~~lvGpsGsGKS-------TLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~   76 (218)
T 1z6g_A           12 SGLVPRGSMNNIY----PLVICGPSGVGKG-------TLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFID   76 (218)
T ss_dssp             ----------CCC----CEEEECSTTSSHH-------HHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECC
T ss_pred             cccCCceecCCCC----EEEEECCCCCCHH-------HHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECC
Confidence            5899999999999    8889999999999       9999999988 5  88877 6655322   1245689999998


Q ss_pred             CCCCCCCCH-HHHHH---HHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHH-----HHHHhCCCCe
Q psy860           92 NGINEHLTA-QEMLE---CFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLST-----AMALIGDRDD  162 (178)
Q Consensus        92 ~~l~~~ltv-~e~l~---~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~I-----AraL~~~P~~  162 (178)
                      +.+++.++. .+++.   +....++    .....++++++...+. ..+   .+|||||+||++|     |++++..|++
T Consensus        77 ~~~~~~~~~~~~~l~~~~~~~~~~g----~~~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~  148 (218)
T 1z6g_A           77 KTIFEDKLKNEDFLEYDNYANNFYG----TLKSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPST  148 (218)
T ss_dssp             HHHHHHHHHTTCEEEEEEETTEEEE----EEHHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred             HHHHHHhhhccchhhhhhcccccCC----CcHHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence            765443221 00110   0000111    1134566677654432 222   5799999999999     8999999999


Q ss_pred             EEeeCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYN  176 (178)
Q Consensus       163 lllDEPt~gLD~~~  176 (178)
                      ++|||||+++|..+
T Consensus       149 ~~Lde~~~~~d~~~  162 (218)
T 1z6g_A          149 DVLLSRLLTRNTEN  162 (218)
T ss_dssp             HHHHHHHHHTCCCC
T ss_pred             HHHHHHHHhcCCCC
Confidence            99999999999764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.74  E-value=5.8e-20  Score=145.31  Aligned_cols=136  Identities=10%  Similarity=-0.011  Sum_probs=91.0

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      |..++|+||||+++.|+    +.+|.|+||||||       |+++.+.++.    |.+.++        ..++.++|++|
T Consensus        10 ~~~~~l~~isl~i~~g~----iigI~G~~GsGKS-------Tl~k~L~~~l----G~~~~~--------~~~~~i~~v~~   66 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPF----LIGVSGGTASGKS-------TVCEKIMELL----GQNEVE--------QRQRKVVILSQ   66 (245)
T ss_dssp             -------------CCSE----EEEEECSTTSSHH-------HHHHHHHHHH----TGGGSC--------GGGCSEEEEEG
T ss_pred             CCceeecceeccCCCCE----EEEEECCCCCCHH-------HHHHHHHHHh----chhccc--------ccCCceEEEeC
Confidence            45689999999999999    7889999999999       8888887754    444443        34567999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCC--ChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGV--KSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      +. +++.+|+.+++.+..........  ...+.+.+.++.+  .+..+.++..||+||+||+.+ ++++.+|+++|+|||
T Consensus        67 d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~  142 (245)
T 2jeo_A           67 DR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI  142 (245)
T ss_dssp             GG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred             Cc-CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCc
Confidence            84 77789999988764332222111  1223445555543  455677889999999999988 688999999999999


Q ss_pred             CCCCC
Q psy860          169 FSSQN  173 (178)
Q Consensus       169 t~gLD  173 (178)
                      ....|
T Consensus       143 ~~~~~  147 (245)
T 2jeo_A          143 LVFYS  147 (245)
T ss_dssp             TTTTS
T ss_pred             ccccc
Confidence            87765

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.74  E-value=7.1e-19  Score=147.11  Aligned_cols=42  Identities=31%  Similarity=0.373  Sum_probs=38.9

Q ss_pred             cCcCCCCChHHHHHHHHHHHHh------CCCCeEEeeCCCCCCCCCCC
Q psy860          136 HRVSGRYSGGNKRKLSTAMALI------GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       136 ~~~~~~LSgGqkQRv~IAraL~------~~P~~lllDEPt~gLD~~~~  177 (178)
                      ++++.+|||||||||+||+||+      ++|++|||||||+||||.++
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~  321 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENK  321 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHH
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHH
Confidence            5788999999999999999999      79999999999999998653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.69  E-value=2.7e-18  Score=141.85  Aligned_cols=92  Identities=13%  Similarity=-0.014  Sum_probs=77.1

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI   94 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l   94 (178)
                      +++++|+.+++|+    ..+|.|+||+|||       |+++.+.++.+|++|.+.+++.+.......++.++++++    
T Consensus       160 ~l~~l~~~i~~g~----~v~i~G~~GsGKT-------Tll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g----  224 (330)
T 2pt7_A          160 AISAIKDGIAIGK----NVIVCGGTGSGKT-------TYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG----  224 (330)
T ss_dssp             HHHHHHHHHHHTC----CEEEEESTTSCHH-------HHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB----
T ss_pred             HHhhhhhhccCCC----EEEEECCCCCCHH-------HHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC----
Confidence            7899999999999    7889999999999       999999999999999999988642221112333444320    


Q ss_pred             CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                                                                       |||+||++||+||.++|+++++||||+
T Consensus       225 -------------------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~  251 (330)
T 2pt7_A          225 -------------------------------------------------GNITSADCLKSCLRMRPDRIILGELRS  251 (330)
T ss_dssp             -------------------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred             -------------------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence                                                             899999999999999999999999997

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.67  E-value=4.4e-17  Score=149.49  Aligned_cols=105  Identities=17%  Similarity=0.062  Sum_probs=75.2

Q ss_pred             hhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCC---------hhHHHHHH
Q psy860           55 GSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVK---------SGPIIDYW  125 (178)
Q Consensus        55 ~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~---------~~~~~~~~  125 (178)
                      .|.-+.+.|+++.+.++|+++.+..                 .+++.+++.++.... ....+         ..+...+.
T Consensus       386 ~C~g~rl~~~~~~V~i~G~~i~~~~-----------------~~~v~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~  447 (916)
T 3pih_A          386 VCGGRRLNREALSVKINGLNIHEFT-----------------ELSISEELEFLKNLN-LTEREREIVGELLKEIEKRLEF  447 (916)
T ss_dssp             TTCSCCBCTTGGGEEETTEEHHHHH-----------------HSBHHHHHHHHHSCC-CCTTTTTTHHHHHHHHHHHHHH
T ss_pred             hcccccCChHhcCcEECCccHHHhh-----------------hCCHHHHHHHHHhcc-CcHHHHHHHHhhHHHHHHHHHH
Confidence            3444557889999999998875542                 245555555432221 11111         11234457


Q ss_pred             HHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCCC--eEEeeCCCCCCCCCCC
Q psy860          126 IDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDRD--DGFQKLPFSSQNLYNT  177 (178)
Q Consensus       126 l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P~--~lllDEPt~gLD~~~~  177 (178)
                      +..+|+... .++++.+|||||||||.|||||+++|+  +|||||||+||||..+
T Consensus       448 L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~  502 (916)
T 3pih_A          448 LVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDT  502 (916)
T ss_dssp             HHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGH
T ss_pred             HHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHH
Confidence            788999754 689999999999999999999999887  9999999999999763

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.64  E-value=4e-21  Score=148.35  Aligned_cols=137  Identities=12%  Similarity=0.054  Sum_probs=84.4

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-H-HhhccceE
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-L-FQYLSGIG   86 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~-~~~~~~ig   86 (178)
                      +.|.+++++|  .+|++||    +.+|+|+||||||       ||++++.|+.+.    +.+++..... . ...+++++
T Consensus         5 ~~~~~~~~~~--~~i~~Ge----i~~l~GpnGsGKS-------TLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~   67 (207)
T 1znw_A            5 GPDTKPTARG--QPAAVGR----VVVLSGPSAVGKS-------TVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVD   67 (207)
T ss_dssp             ----------------CCC----EEEEECSTTSSHH-------HHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTT
T ss_pred             CCCCCcCCCC--CCCCCCC----EEEEECCCCCCHH-------HHHHHHHhhCCc----eEEcccccccCCcccccCCCe
Confidence            4556789999  7999999    8889999999999       999999998852    2222211110 1 12356899


Q ss_pred             EecCCCCCCCCCCHHHHHHHH----H--HhcCCCCCChhHHHHHH------HHHcCCCccccCcCCCCChHHHHHHHHHH
Q psy860           87 YCPQFNGINEHLTAQEMLECF----S--ALRGIPGVKSGPIIDYW------IDLLGLTEYRHRVSGRYSGGNKRKLSTAM  154 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~----~--~~~~~~~~~~~~~~~~~------l~~~~L~~~~~~~~~~LSgGqkQRv~IAr  154 (178)
                      |+||++.+++.+++.+++..+    .  ..++.+..+.++++.+.      ++.+++.+..++++.+||           
T Consensus        68 ~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------  136 (207)
T 1znw_A           68 YHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------  136 (207)
T ss_dssp             BEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------
T ss_pred             eEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------
Confidence            999998776666666654311    1  11222222233444444      566677677788888898           


Q ss_pred             HHhCCCCeEEeeCCCCCCC
Q psy860          155 ALIGDRDDGFQKLPFSSQN  173 (178)
Q Consensus       155 aL~~~P~~lllDEPt~gLD  173 (178)
                      +|+.+|++++|||||+++|
T Consensus       137 ~l~~~p~~~~LDep~~~l~  155 (207)
T 1znw_A          137 VFLAPPSWQDLQARLIGRG  155 (207)
T ss_dssp             EEEECSCHHHHHHHHHTTS
T ss_pred             EEEECCCHHHHHHHHHhcC
Confidence            9999999999999999985

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.63  E-value=2.5e-18  Score=146.98  Aligned_cols=128  Identities=13%  Similarity=0.043  Sum_probs=100.1

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccc---ccccH-------Hhhc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMT---NIMHL-------FQYL   82 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~---~~~~~-------~~~~   82 (178)
                      ..+++++ |+|.+|+    +.+|+|+||+|||       ||++.+.|+.+|+.|.+.+.|+   ++...       ..++
T Consensus       145 ~~vld~v-l~i~~Gq----~~~IvG~sGsGKS-------TLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~  212 (438)
T 2dpy_A          145 VRAINAL-LTVGRGQ----RMGLFAGSGVGKS-------VLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRA  212 (438)
T ss_dssp             CHHHHHH-SCCBTTC----EEEEEECTTSSHH-------HHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHH
T ss_pred             ceEEeee-EEecCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccC
Confidence            3799999 9999999    8889999999999       9999999999999999999998   55442       2356


Q ss_pred             cceEEecCC-CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860           83 SGIGYCPQF-NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD  161 (178)
Q Consensus        83 ~~ig~v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~  161 (178)
                      +.++|++|+ ..+++++++.+++.+...+......             .+....+ .+..||+|| |||+||   +.+|+
T Consensus       213 r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~-------------~v~~~ld-~l~~lS~g~-qrvslA---l~~p~  274 (438)
T 2dpy_A          213 RSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQ-------------HVLLIMD-SLTRYAMAQ-REIALA---IGEPP  274 (438)
T ss_dssp             TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTC-------------EEEEEEE-CHHHHHHHH-HHHHHH---TTCCC
T ss_pred             ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCC-------------CHHHHHH-hHHHHHHHH-HHHHHH---hCCCc
Confidence            789999995 5567788999998876543321100             0111122 256799999 999999   88998


Q ss_pred             eEEeeCCCCCCCCCC
Q psy860          162 DGFQKLPFSSQNLYN  176 (178)
Q Consensus       162 ~lllDEPt~gLD~~~  176 (178)
                      +      |+|||+..
T Consensus       275 ~------t~glD~~~  283 (438)
T 2dpy_A          275 A------TKGYPPSV  283 (438)
T ss_dssp             C------SSSCCTTH
T ss_pred             c------cccCCHHH
Confidence            8      99999975

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.61  E-value=4.4e-16  Score=142.81  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=63.4

Q ss_pred             CCCCHHHHHHHHHHhcCCCC----------CChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCC--Ce
Q psy860           96 EHLTAQEMLECFSALRGIPG----------VKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDR--DD  162 (178)
Q Consensus        96 ~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P--~~  162 (178)
                      ..+||.|++.|+..+. ++.          .+..+++ +.|+.+||... .++.+.+|||||||||.||++|+.+|  ++
T Consensus       450 ~~ltV~e~~~f~e~l~-l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l  527 (972)
T 2r6f_A          450 TAMSVTEALAFFDGLE-LTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL  527 (972)
T ss_dssp             HTSBHHHHHHHHHHCC-CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred             hhCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence            4589999999865442 322          1223344 35888999864 79999999999999999999999985  99


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      +||||||+||||..+
T Consensus       528 lILDEPTagLdp~~~  542 (972)
T 2r6f_A          528 YVLDEPSIGLHQRDN  542 (972)
T ss_dssp             EEEECTTTTCCGGGH
T ss_pred             EEEeCcccCCCHHHH
Confidence            999999999999753

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.58  E-value=4.2e-16  Score=114.94  Aligned_cols=43  Identities=21%  Similarity=0.130  Sum_probs=39.2

Q ss_pred             cccCcCCCCChHHHHHHHHH------HHHhCCCCeEEeeCCCCCCCCCC
Q psy860          134 YRHRVSGRYSGGNKRKLSTA------MALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       134 ~~~~~~~~LSgGqkQRv~IA------raL~~~P~~lllDEPt~gLD~~~  176 (178)
                      ..++++.+|||||||||+||      |||+.+|++++|||||+|||+.+
T Consensus        50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~   98 (148)
T 1f2t_B           50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER   98 (148)
T ss_dssp             TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHH
T ss_pred             cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHH
Confidence            35788999999999999876      89999999999999999999865

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.57  E-value=2.3e-18  Score=140.52  Aligned_cols=134  Identities=18%  Similarity=0.056  Sum_probs=71.6

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-CCcccccccccccccccHHhhccceEEec
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-SPFQAAQNSLLMTNIMHLFQYLSGIGYCP   89 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~~~~~g~i~~~g~~~~~~~~~~~~ig~v~   89 (178)
                      |...++++++|+|          +|+|+||+|||       ||++.+.+. ..|++| +.++|.++..... .+.+++++
T Consensus         9 ~~~~~l~~~~~~I----------~lvG~nG~GKS-------TLl~~L~g~~~~~~~g-i~~~g~~~~~t~~-~~~~~~~~   69 (301)
T 2qnr_A            9 HRKSVKKGFEFTL----------MVVGESGLGKS-------TLINSLFLTDLYPERV-ISGAAEKIERTVQ-IEASTVEI   69 (301)
T ss_dssp             ---------CEEE----------EEEEETTSSHH-------HHHHHHHC--------------------------CEEEE
T ss_pred             CCEEEEcCCCEEE----------EEECCCCCCHH-------HHHHHHhCCCccCCCC-cccCCcccCCcce-EeeEEEEe
Confidence            4457999999999          59999999999       999999887 778888 7777766543222 34689999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |...+...++++|+..+......  ....+..+..+      .+..++++.++|||||||+.+|||++    ++++||||
T Consensus        70 q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt  137 (301)
T 2qnr_A           70 EERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPF  137 (301)
T ss_dssp             C---CCEEEEEEEEC-------------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSS
T ss_pred             cCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCc
Confidence            98887788888887665332211  01112222222      23346788899999999999999886    99999999


Q ss_pred             CC-CCCC
Q psy860          170 SS-QNLY  175 (178)
Q Consensus       170 ~g-LD~~  175 (178)
                      ++ ||+.
T Consensus       138 ~~~Ld~~  144 (301)
T 2qnr_A          138 GHGLKPL  144 (301)
T ss_dssp             SSSCCHH
T ss_pred             ccCCCHH
Confidence            84 9974

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.56  E-value=3e-15  Score=136.36  Aligned_cols=59  Identities=20%  Similarity=0.094  Sum_probs=51.3

Q ss_pred             hhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCC--CeEEeeCCCCCCCCCCC
Q psy860          118 SGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDR--DDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       118 ~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P--~~lllDEPt~gLD~~~~  177 (178)
                      ..++++ .++.+||... .++.+.+|||||||||.||++|+.+|  +++||||||++|||..+
T Consensus       356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~  417 (842)
T 2vf7_A          356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADT  417 (842)
T ss_dssp             HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGH
T ss_pred             HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHH
Confidence            344555 5788999865 79999999999999999999999999  59999999999999753

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.52  E-value=1e-16  Score=131.04  Aligned_cols=125  Identities=15%  Similarity=0.128  Sum_probs=91.9

Q ss_pred             HHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhh--ccceEEecCCCCCCC
Q psy860           25 AQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQY--LSGIGYCPQFNGINE   96 (178)
Q Consensus        25 ~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~--~~~ig~v~Q~~~l~~   96 (178)
                      .|+    +.+|+|+||||||       |+++++.++.+|++|.+.+.+.++..      ...+  +.+++|++|++.+++
T Consensus       101 ~g~----vi~lvG~nGsGKT-------Tll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p  169 (304)
T 1rj9_A          101 KGR----VVLVVGVNGVGKT-------TTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDS  169 (304)
T ss_dssp             SSS----EEEEECSTTSSHH-------HHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCH
T ss_pred             CCe----EEEEECCCCCcHH-------HHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCH
Confidence            567    8889999999999       99999999999999999999988643      2222  357999999998888


Q ss_pred             CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC--eEEeeCCCCCCC
Q psy860           97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD--DGFQKLPFSSQN  173 (178)
Q Consensus        97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~--~lllDEPt~gLD  173 (178)
                      ..++.+++.+.... +.   + .    .+++..|..+..++.+.+||   +||++||||++.+|+  ++.|| |+++.+
T Consensus       170 ~~~v~~~v~~~~~~-~~---d-~----~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lLvLD-a~t~~~  235 (304)
T 1rj9_A          170 AALAYDAVQAMKAR-GY---D-L----LFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWLVLD-AVTGQN  235 (304)
T ss_dssp             HHHHHHHHHHHHHH-TC---S-E----EEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEEEEE-TTBCTH
T ss_pred             HHHHHHHHHHHHhC-CC---C-E----EEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEEEEc-HHHHHH
Confidence            88999998764321 11   0 0    02233454444444444454   899999999999999  66777 666654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.51  E-value=5.1e-15  Score=128.86  Aligned_cols=116  Identities=6%  Similarity=-0.064  Sum_probs=84.5

Q ss_pred             ccch-hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860           16 FNGI-NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI   94 (178)
Q Consensus        16 ~~~v-~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l   94 (178)
                      |+.+ +..+++|+    +.+|.|+||+|||       ||+..+++..+++ |..               .+.+++|++. 
T Consensus       270 ld~vL~g~i~~G~----i~~i~G~~GsGKS-------TLl~~l~g~~~~~-G~~---------------vi~~~~ee~~-  321 (525)
T 1tf7_A          270 LDEMCGGGFFKDS----IILATGATGTGKT-------LLVSRFVENACAN-KER---------------AILFAYEESR-  321 (525)
T ss_dssp             HHHHTTSSEESSC----EEEEEECTTSSHH-------HHHHHHHHHHHTT-TCC---------------EEEEESSSCH-
T ss_pred             HHHHhCCCCCCCc----EEEEEeCCCCCHH-------HHHHHHHHHHHhC-CCC---------------EEEEEEeCCH-
Confidence            3443 55888999    7789999999999       9999998887664 331               2566777641 


Q ss_pred             CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860           95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus        95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                         ..+.++.    ...+..       +++ +...++....+..+.+||+||+||+++|+++..+|++|++| ||++||+
T Consensus       322 ---~~l~~~~----~~~g~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~  385 (525)
T 1tf7_A          322 ---AQLLRNA----YSWGMD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALAR  385 (525)
T ss_dssp             ---HHHHHHH----HTTSCC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTS
T ss_pred             ---HHHHHHH----HHcCCC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHh
Confidence               1122221    111211       222 33467777788889999999999999999999999999999 9999998


Q ss_pred             C
Q psy860          175 Y  175 (178)
Q Consensus       175 ~  175 (178)
                      .
T Consensus       386 ~  386 (525)
T 1tf7_A          386 G  386 (525)
T ss_dssp             S
T ss_pred             h
Confidence            6

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.50  E-value=9.4e-16  Score=123.91  Aligned_cols=136  Identities=9%  Similarity=-0.141  Sum_probs=86.3

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc-cccccccccccHHhhccceEEecCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA-QNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g-~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      ++|+++++.+++|+    +.+|.|+||+|||       |++..+++...++.| .+.+.+.+.. ..++++++..+++..
T Consensus        23 ~~Ld~i~~~l~~G~----~~~i~G~~G~GKT-------Tl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~~~~~~~   90 (296)
T 1cr0_A           23 TGINDKTLGARGGE----VIMVTSGSGMGKS-------TFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRV   90 (296)
T ss_dssp             TTHHHHHCSBCTTC----EEEEEESTTSSHH-------HHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCCCe----EEEEEeCCCCCHH-------HHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHHHHHcCC
Confidence            68999999999999    8889999999999       999999999888877 5644443332 233434444444433


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHH-HHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGN-KRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq-kQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                      .+    ++.+++.... .   ...+..+.++++++..++  ..+..+.++|.++ +||+. |+++..+|+++|+||||+.
T Consensus        91 ~~----~~~~~l~~~~-~---~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~  159 (296)
T 1cr0_A           91 RL----RQSDSLKREI-I---ENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV  159 (296)
T ss_dssp             CG----GGCHHHHHHH-H---HHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred             Ch----hhccccccCC-C---CHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence            21    2223332211 1   111223334444433233  1233456789998 66776 9999999999999999994


Q ss_pred             C
Q psy860          172 Q  172 (178)
Q Consensus       172 L  172 (178)
                      +
T Consensus       160 ~  160 (296)
T 1cr0_A          160 V  160 (296)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.48  E-value=2.6e-15  Score=120.20  Aligned_cols=102  Identities=14%  Similarity=0.068  Sum_probs=76.0

Q ss_pred             hccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-cccccccccccccHHhhccceE
Q psy860            8 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-AAQNSLLMTNIMHLFQYLSGIG   86 (178)
Q Consensus         8 ~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-~g~i~~~g~~~~~~~~~~~~ig   86 (178)
                      +..|+.++|+++|  +++|+    +.+|.|+||||||       |+++.+.++.+|+ +|.|.+++.++          .
T Consensus         9 ~~l~~~~vl~~i~--i~~g~----~v~i~Gp~GsGKS-------Tll~~l~g~~~~~~~G~I~~~g~~i----------~   65 (261)
T 2eyu_A            9 KKLGLPDKVLELC--HRKMG----LILVTGPTGSGKS-------TTIASMIDYINQTKSYHIITIEDPI----------E   65 (261)
T ss_dssp             GGSSCCTHHHHGG--GCSSE----EEEEECSTTCSHH-------HHHHHHHHHHHHHCCCEEEEEESSC----------C
T ss_pred             HHCCCHHHHHHHh--hCCCC----EEEEECCCCccHH-------HHHHHHHHhCCCCCCCEEEEcCCcc----------e
Confidence            3456668999999  89999    8889999999999       9999999999888 99998888754          3


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      |++|+..-+              .   .  +         +.+++..      ..|      |++||+||.++|+++++|
T Consensus        66 ~~~~~~~~~--------------v---~--q---------~~~gl~~------~~l------~~~la~aL~~~p~illlD  105 (261)
T 2eyu_A           66 YVFKHKKSI--------------V---N--Q---------REVGEDT------KSF------ADALRAALREDPDVIFVG  105 (261)
T ss_dssp             SCCCCSSSE--------------E---E--E---------EEBTTTB------SCH------HHHHHHHHHHCCSEEEES
T ss_pred             eecCCccee--------------e---e--H---------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeC
Confidence            444432100              0   0  0         0233321      122      899999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          167 LPFSSQNLY  175 (178)
Q Consensus       167 EPt~gLD~~  175 (178)
                      |||   |+.
T Consensus       106 Ep~---D~~  111 (261)
T 2eyu_A          106 EMR---DLE  111 (261)
T ss_dssp             CCC---SHH
T ss_pred             CCC---CHH
Confidence            999   764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.48  E-value=2.3e-17  Score=126.81  Aligned_cols=114  Identities=11%  Similarity=-0.073  Sum_probs=90.1

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCC--CCCCHHHHHHHHHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGIN--EHLTAQEMLECFSA  109 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~--~~ltv~e~l~~~~~  109 (178)
                      +.+|.|+||||||       |+++.+.++.+|                    .++|++|++.++  ..+++.++..+.  
T Consensus         8 ~i~i~G~~GsGKS-------Tl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~--   58 (211)
T 3asz_A            8 VIGIAGGTASGKT-------TLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVN--   58 (211)
T ss_dssp             EEEEEESTTSSHH-------HHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSC--
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCC--
Confidence            6789999999999       888888887543                    388999987665  467888775432  


Q ss_pred             hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHH----HHHHHHHHHHhCCCCeEEeeCCCCC-------CCCC
Q psy860          110 LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGN----KRKLSTAMALIGDRDDGFQKLPFSS-------QNLY  175 (178)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq----kQRv~IAraL~~~P~~lllDEPt~g-------LD~~  175 (178)
                       .+.+.....+++.++++.+++.+..++++.++|+|+    +||+.+|++++.+|.++++||||++       ||+.
T Consensus        59 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~  134 (211)
T 3asz_A           59 -YDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDAD  134 (211)
T ss_dssp             -TTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECC
T ss_pred             -CCChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCC
Confidence             122222345667888899998877788889999997    4788999999999999999999999       7864

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.45  E-value=5.1e-16  Score=144.16  Aligned_cols=109  Identities=11%  Similarity=-0.020  Sum_probs=77.8

Q ss_pred             cccccchhhhccH-------HHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccce
Q psy860           13 CPQFNGINEHLTA-------QEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGI   85 (178)
Q Consensus        13 ~~~~~~v~~~~~~-------g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~i   85 (178)
                      ..+++||+|.++.       |+    +.+|.||||+|||       |+++.+ |+..+-                  .++
T Consensus       769 ~~v~ndi~l~~~~~~~~~~~g~----i~~ItGpNgsGKS-------TlLr~i-Gl~~~~------------------aqi  818 (1022)
T 2o8b_B          769 DFIPNDILIGCEEEEQENGKAY----CVLVTGPNMGGKS-------TLMRQA-GLLAVM------------------AQM  818 (1022)
T ss_dssp             CCCCEEEEESCCCSCC---CCC----EEEEECCTTSSHH-------HHHHHH-HHHHHH------------------HTT
T ss_pred             ceEeeeeeeccccccccCCCCc----EEEEECCCCCChH-------HHHHHH-HHHHHH------------------hhe
Confidence            5799999999987       88    8889999999999       999988 776431                  145


Q ss_pred             E-EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           86 G-YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        86 g-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      | ||||++.   .+++.+++.                     ..+|+.+...+..+++|+++++ +++|++++++|+++|
T Consensus       819 G~~Vpq~~~---~l~v~d~I~---------------------~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlL  873 (1022)
T 2o8b_B          819 GCYVPAEVC---RLTPIDRVF---------------------TRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVL  873 (1022)
T ss_dssp             TCCEESSEE---EECCCSBEE---------------------EECC---------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred             eEEeccCcC---CCCHHHHHH---------------------HHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence            6 9999752   334433321                     1123333333445678888876 999999999999999


Q ss_pred             eeCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYN  176 (178)
Q Consensus       165 lDEPt~gLD~~~  176 (178)
                      |||||+|+|+..
T Consensus       874 LDEp~~Gtd~~d  885 (1022)
T 2o8b_B          874 VDELGRGTATFD  885 (1022)
T ss_dssp             EECTTTTSCHHH
T ss_pred             EECCCCCCChHH
Confidence            999999999753

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.45  E-value=3.2e-15  Score=135.26  Aligned_cols=104  Identities=13%  Similarity=-0.063  Sum_probs=78.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-cccccccccccccccHHhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-FQAAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      ..+++||||+   |+    +.+|.||||+|||       |+++.+.++.. ++.|.+.-         ..+..+++++| 
T Consensus       566 ~~vl~disl~---g~----i~~I~GpNGsGKS-------TlLr~iagl~~~~~~G~~vp---------a~~~~i~~v~~-  621 (765)
T 1ewq_A          566 EFVPNDLEMA---HE----LVLITGPNMAGKS-------TFLRQTALIALLAQVGSFVP---------AEEAHLPLFDG-  621 (765)
T ss_dssp             CCCCEEEEES---SC----EEEEESCSSSSHH-------HHHHHHHHHHHHHTTTCCBS---------SSEEEECCCSE-
T ss_pred             ceEeeeccCC---Cc----EEEEECCCCCChH-------HHHHHHHhhhhhcccCceee---------hhccceeeHHH-
Confidence            5789999999   88    8889999999999       99999988853 66666421         11335777776 


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH--hCCCCeEEeeCC-
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL--IGDRDDGFQKLP-  168 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL--~~~P~~lllDEP-  168 (178)
                        ++..+++.|++..                                  .+|+|++|++.+|+++  +++|+++||||| 
T Consensus       622 --i~~~~~~~d~l~~----------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpg  665 (765)
T 1ewq_A          622 --IYTRIGASDDLAG----------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVG  665 (765)
T ss_dssp             --EEEECCC----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTT
T ss_pred             --hhccCCHHHHHHh----------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCC
Confidence              4555666665421                                  3689999999999999  999999999999 


Q ss_pred             --CCCCCCCC
Q psy860          169 --FSSQNLYN  176 (178)
Q Consensus       169 --t~gLD~~~  176 (178)
                        |++||+.+
T Consensus       666 rGTs~lD~~~  675 (765)
T 1ewq_A          666 RGTSSLDGVA  675 (765)
T ss_dssp             TTSCHHHHHH
T ss_pred             CCCCCcCHHH
Confidence              99999753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.44  E-value=9.4e-16  Score=127.83  Aligned_cols=125  Identities=15%  Similarity=0.130  Sum_probs=89.6

Q ss_pred             ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-ccccccccc-ccccccHHhhccceEEecCCCC
Q psy860           16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-FQAAQNSLL-MTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~~~g~i~~~-g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      ++++++.+ .|+    +.+++|+||+|||       ||++.+.|... ++.|.+.++ |....  ...++.++++||+..
T Consensus       206 l~~L~~~~-~G~----~~~lvG~sG~GKS-------TLln~L~g~~~~~~~G~I~~~~G~g~~--tt~~~~i~~v~q~~~  271 (358)
T 2rcn_A          206 LKPLEEAL-TGR----ISIFAGQSGVGKS-------SLLNALLGLQNEILTNDVSNVSGLGQH--TTTAARLYHFPHGGD  271 (358)
T ss_dssp             HHHHHHHH-TTS----EEEEECCTTSSHH-------HHHHHHHCCSSCCCCC---------------CCCEEEECTTSCE
T ss_pred             HHHHHHhc-CCC----EEEEECCCCccHH-------HHHHHHhccccccccCCccccCCCCcc--ceEEEEEEEECCCCE
Confidence            56777765 466    7889999999999       99999999998 999999876 54432  233457999999988


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      +++..+++++.     ....+..+..+.+.++++.+++.++.++.+.++| ||+||++||++++...
T Consensus       272 l~dtpgv~e~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~~  332 (358)
T 2rcn_A          272 VIDSPGVREFG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAET  332 (358)
T ss_dssp             EEECHHHHTCC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCHH
T ss_pred             ecCcccHHHhh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCHH
Confidence            88888888731     1222222333456678888999999999999999 9999999999987543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.43  E-value=1.7e-17  Score=144.47  Aligned_cols=123  Identities=11%  Similarity=-0.027  Sum_probs=86.3

Q ss_pred             cccccchhh-hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhh--hhccCCccccccccccccccc-HHhhccceEEe
Q psy860           13 CPQFNGINE-HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGS--AIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYC   88 (178)
Q Consensus        13 ~~~~~~v~~-~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~--~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v   88 (178)
                      .++|++||+ .|++||    +.+|+|+||||||       ||++.  +.|+.+|++|.++++|++... ..+.++.+||+
T Consensus        25 ~~~Ld~i~~G~i~~Ge----~~~l~G~nGsGKS-------TL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~   93 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGR----STLVSGTSGTGKT-------LFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWD   93 (525)
T ss_dssp             CTTHHHHTTSSEETTS----EEEEEESTTSSHH-------HHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCC
T ss_pred             chhHHHhcCCCCCCCe----EEEEEcCCCCCHH-------HHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC
Confidence            489999999 999999    8889999999999       99998  679988899999999987432 33455679999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      +|++...+++      .+   .......    .+.++++.+++.+..++.+.+||+|             +|+++++|||
T Consensus        94 ~q~~~~~~~l------~~---~~~~~~~----~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe~  147 (525)
T 1tf7_A           94 LAKLVDEGKL------FI---LDASPDP----EGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDSV  147 (525)
T ss_dssp             HHHHHHTTSE------EE---EECCCCS----SCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEECS
T ss_pred             hHHhhccCcE------EE---EecCccc----chhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECCH
Confidence            9975422110      00   0000000    1112334455555566667777776             4889999999


Q ss_pred             CCCC
Q psy860          169 FSSQ  172 (178)
Q Consensus       169 t~gL  172 (178)
                      |+.+
T Consensus       148 t~~~  151 (525)
T 1tf7_A          148 TSVF  151 (525)
T ss_dssp             TTTS
T ss_pred             HHHH
Confidence            9854

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.43  E-value=1.9e-15  Score=138.77  Aligned_cols=110  Identities=6%  Similarity=-0.088  Sum_probs=71.3

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-cccccccccccccccHHhhccceEEecC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-FQAAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~~~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      ...+++||||+++.|+    +.+|+||||+|||       |+++.+.++.. ++.                   -.++|.
T Consensus       659 ~~~V~ndvsl~~~~g~----i~~ItGPNGaGKS-------TlLr~i~~i~~~aq~-------------------g~~vpa  708 (918)
T 3thx_B          659 DQYVPNNTDLSEDSER----VMIITGPNMGGKS-------SYIKQVALITIMAQI-------------------GSYVPA  708 (918)
T ss_dssp             SSSCCEEEEECTTSCC----EEEEESCCCHHHH-------HHHHHHHHHHHHHHH-------------------TCCBSS
T ss_pred             CceecccccccCCCCe----EEEEECCCCCchH-------HHHHHHHHHHHHhhc-------------------Cccccc
Confidence            3578999999999999    8889999999999       88887654311 111                   112332


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      .......                        +++++..+++.+...+..+++|+||+|++.|+++ +++|+++||||||+
T Consensus       709 ~~~~i~~------------------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~  763 (918)
T 3thx_B          709 EEATIGI------------------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGR  763 (918)
T ss_dssp             SEEEEEC------------------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTT
T ss_pred             hhhhhhH------------------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCC
Confidence            2100000                        0011223344444556678899999999999999 89999999999999


Q ss_pred             CCCCCC
Q psy860          171 SQNLYN  176 (178)
Q Consensus       171 gLD~~~  176 (178)
                      ||||..
T Consensus       764 GlD~~~  769 (918)
T 3thx_B          764 GTSTHD  769 (918)
T ss_dssp             TSCHHH
T ss_pred             CCCHHH
Confidence            999853

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.42  E-value=4.5e-16  Score=122.76  Aligned_cols=127  Identities=10%  Similarity=-0.012  Sum_probs=89.2

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhh---ccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAI---RFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFS  108 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~---~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~  108 (178)
                      +.+|+|+||||||       |+++.+.   |+..++.|.+..++.+...  .....+.+++|+..+++..++.+++....
T Consensus        29 ~i~l~G~~GsGKS-------Tl~k~La~~lg~~~~~~G~i~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~v~~~l~~~l   99 (246)
T 2bbw_A           29 RAVILGPPGSGKG-------TVCQRIAQNFGLQHLSSGHFLRENIKAST--EVGEMAKQYIEKSLLVPDHVITRLMMSEL   99 (246)
T ss_dssp             EEEEECCTTSSHH-------HHHHHHHHHHCCCCEEHHHHHHHHHHTTC--HHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHhCCeEecHHHHHHHHHhcCC--hHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            7889999999999       9999998   9999999999877654321  12234556677777788888998887643


Q ss_pred             H--------hcCCCCCChhHHHHHHHH--HcC------------CCccccCcCCCCChHHHHHHHHHHHH-hCCCCeEEe
Q psy860          109 A--------LRGIPGVKSGPIIDYWID--LLG------------LTEYRHRVSGRYSGGNKRKLSTAMAL-IGDRDDGFQ  165 (178)
Q Consensus       109 ~--------~~~~~~~~~~~~~~~~l~--~~~------------L~~~~~~~~~~LSgGqkQRv~IAraL-~~~P~~lll  165 (178)
                      .        ..+.+..  ...++.+.+  .++            +....++++.+|||    ||   +|+ +.+|+++++
T Consensus       100 ~~~~~~~~il~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lll  170 (246)
T 2bbw_A          100 ENRRGQHWLLDGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGI  170 (246)
T ss_dssp             HTCTTSCEEEESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTB
T ss_pred             HhcCCCeEEEECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccc
Confidence            2        1122211  222333322  222            23345778889999    66   788 999999999


Q ss_pred             e----CCCCCCCCCC
Q psy860          166 K----LPFSSQNLYN  176 (178)
Q Consensus       166 D----EPt~gLD~~~  176 (178)
                      |    |||++||+.+
T Consensus       171 D~~~~EP~~~ld~~~  185 (246)
T 2bbw_A          171 DDVTGEPLVQQEDDK  185 (246)
T ss_dssp             CTTTCCBCBCCGGGS
T ss_pred             ccccccccccCCCCc
Confidence            9    9999999865

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.41  E-value=3.4e-15  Score=113.95  Aligned_cols=145  Identities=12%  Similarity=0.060  Sum_probs=86.2

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC-----CcccccccccccccccHHhhccceEEe
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS-----PFQAAQNSLLMTNIMHLFQYLSGIGYC   88 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~-----~~~~g~i~~~g~~~~~~~~~~~~ig~v   88 (178)
                      +++++  |.+..|+    ..+++|++|+|||       ||++.+.+..     .|+.|.....+.-.     +...+-+ 
T Consensus        16 ~~l~~--~~~~~~~----~v~lvG~~g~GKS-------TLl~~l~g~~~~~~~~~~~G~~~~~~~~~-----~~~~~~l-   76 (210)
T 1pui_A           16 PDIRH--LPSDTGI----EVAFAGRSNAGKS-------SALNTLTNQKSLARTSKTPGRTQLINLFE-----VADGKRL-   76 (210)
T ss_dssp             SSGGG--SSCSCSE----EEEEEECTTSSHH-------HHHTTTCCC-------------CCEEEEE-----EETTEEE-
T ss_pred             CCHhH--CCCCCCc----EEEEECCCCCCHH-------HHHHHHhCCCccccccCCCccceeeEEEE-----ecCCEEE-
Confidence            67887  8899998    7889999999999       9999999887     77878765432100     0001111 


Q ss_pred             cCCCCCCC----CCC---HHHHHHHHHHh-c---------CC--CCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHH
Q psy860           89 PQFNGINE----HLT---AQEMLECFSAL-R---------GI--PGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKR  148 (178)
Q Consensus        89 ~Q~~~l~~----~lt---v~e~l~~~~~~-~---------~~--~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQ  148 (178)
                      .+.++...    ...   .+..+..+... .         ..  ......+.+.++++..++... ...++..+|+||+|
T Consensus        77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~  156 (210)
T 1pui_A           77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK  156 (210)
T ss_dssp             EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH
T ss_pred             EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH
Confidence            11122110    000   11112222110 0         00  111122345566777787643 36778899999999


Q ss_pred             H-HHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          149 K-LSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       149 R-v~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      | +..+++++.+|+.+++|||||++|+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~  186 (210)
T 1pui_A          157 AQLNMVREAVLAFNGDVQVETFSSLKKQGV  186 (210)
T ss_dssp             HHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred             HHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence            9 8999999999999999999999998753

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.40  E-value=6.4e-14  Score=105.74  Aligned_cols=43  Identities=14%  Similarity=-0.093  Sum_probs=37.6

Q ss_pred             cccCcCCCCChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCC
Q psy860          134 YRHRVSGRYSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       134 ~~~~~~~~LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~  176 (178)
                      ...+.+..||||||||++||++|+.    .|+++||||||+|||+.+
T Consensus        57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~  103 (173)
T 3kta_B           57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDAN  103 (173)
T ss_dssp             SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred             ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHH
Confidence            3456788999999999999999974    469999999999999865

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.39  E-value=2.2e-15  Score=127.99  Aligned_cols=130  Identities=11%  Similarity=-0.021  Sum_probs=76.6

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH-hhccceEEec
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF-QYLSGIGYCP   89 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~-~~~~~ig~v~   89 (178)
                      |...+++++||+|          +|+|+||+|||       ||++.+.|...++.|.   ++..+.... ..++.+++++
T Consensus        22 ~~~~vl~~vsf~I----------~lvG~sGaGKS-------TLln~L~g~~~~~~~~---~~~~~~~~~t~~~~~i~~v~   81 (418)
T 2qag_C           22 YRKSVKRGFEFTL----------MVVGESGLGKS-------TLINSLFLTDLYSPEY---PGPSHRIKKTVQVEQSKVLI   81 (418)
T ss_dssp             TTTTCC-CCCEEE----------EEECCTTSSHH-------HHHHHHTTCCCCCCCC---CSCC-----CCEEEEEECC-
T ss_pred             CCEEEecCCCEEE----------EEECCCCCcHH-------HHHHHHhCCCCCCCCC---CCcccCCccceeeeeEEEEE
Confidence            4467999999998          59999999999       9999999987644431   111111111 1134689999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC---eEEee
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD---DGFQK  166 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~---~lllD  166 (178)
                      |...+++.+|+.|++.+......   ....+.+.+.++            ..++.+++||+.||||++.+|+   +|++|
T Consensus        82 q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ld  146 (418)
T 2qag_C           82 KEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFI  146 (418)
T ss_dssp             -----CEEEEEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEEC
T ss_pred             ecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEe
Confidence            99888888899888766432211   111122222222            1355677889999999999999   99999


Q ss_pred             CCC-CCCCCC
Q psy860          167 LPF-SSQNLY  175 (178)
Q Consensus       167 EPt-~gLD~~  175 (178)
                      ||| ++||+.
T Consensus       147 ePt~~~L~~~  156 (418)
T 2qag_C          147 APSGHGLKPL  156 (418)
T ss_dssp             CC-CCSCCHH
T ss_pred             cCcccCCCHH
Confidence            999 699974

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.38  E-value=8.9e-15  Score=119.28  Aligned_cols=114  Identities=7%  Similarity=-0.074  Sum_probs=84.3

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc---cccccccHHh-hc-cceEEecCCCCCC-----CCCCHH
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL---LMTNIMHLFQ-YL-SGIGYCPQFNGIN-----EHLTAQ  101 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~---~g~~~~~~~~-~~-~~ig~v~Q~~~l~-----~~ltv~  101 (178)
                      +.+++|+||+|||       ||++.+. ..+|+.|+|.+   +|++.+...+ .+ +.+||++|.|.+.     +++|+ 
T Consensus       167 i~~l~G~sG~GKS-------TLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-  237 (302)
T 2yv5_A          167 ICILAGPSGVGKS-------SILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-  237 (302)
T ss_dssp             EEEEECSTTSSHH-------HHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred             EEEEECCCCCCHH-------HHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence            6789999999999       9999999 99999999999   8877654322 22 3699999998654     67889 


Q ss_pred             HHH--HHH------HHhcC-CCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHH
Q psy860          102 EML--ECF------SALRG-IPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAM  154 (178)
Q Consensus       102 e~l--~~~------~~~~~-~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAr  154 (178)
                      +++  .|.      ..+.+ ....+...++.++++.++|.+ ..++++..|||.+||++.|||
T Consensus       238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            776  332      12332 234455678999999999985 788999999999999999986

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.36  E-value=2.5e-14  Score=118.88  Aligned_cols=128  Identities=13%  Similarity=0.031  Sum_probs=84.3

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH---------hhcc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF---------QYLS   83 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~---------~~~~   83 (178)
                      ..+++++ |.|.+|+    ..+|+|+||+|||       ||+++++++.+|+.|.+.+.|++.....         .+++
T Consensus        59 ~~ald~l-l~i~~Gq----~~gIiG~nGaGKT-------TLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~  126 (347)
T 2obl_A           59 VRAIDGL-LTCGIGQ----RIGIFAGSGVGKS-------TLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSK  126 (347)
T ss_dssp             CHHHHHH-SCEETTC----EEEEEECTTSSHH-------HHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTT
T ss_pred             CEEEEee-eeecCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhc
Confidence            3799999 9999999    8889999999999       9999999999999999988886532221         1344


Q ss_pred             ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      .+.+++|...     +..+.+.......         ...+++...+-. -..-..+..||+|| |||++|   +.+|++
T Consensus       127 ~v~~~~~~~~-----~~~~r~~~~~~~~---------~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~  188 (347)
T 2obl_A          127 CVLVVTTSDR-----PALERMKAAFTAT---------TIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV  188 (347)
T ss_dssp             EEEEEECTTS-----CHHHHHHHHHHHH---------HHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC
T ss_pred             eEEEEECCCC-----CHHHHHHHHHHHH---------HHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc
Confidence            5777877531     2222221110000         001111110100 00014578899999 899999   688887


Q ss_pred             EEeeCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYN  176 (178)
Q Consensus       163 lllDEPt~gLD~~~  176 (178)
                            |+||||..
T Consensus       189 ------t~Gldp~~  196 (347)
T 2obl_A          189 ------RGGFPPSV  196 (347)
T ss_dssp             ------BTTBCHHH
T ss_pred             ------ccCCCHHH
Confidence                  99999864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.35  E-value=3e-15  Score=114.47  Aligned_cols=115  Identities=10%  Similarity=-0.109  Sum_probs=80.7

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALR  111 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~  111 (178)
                      ..+|+|+||+|||       |+++.+.++.+ ++| +.++|....+....++.+||++|+.  ....   +++.   ...
T Consensus         3 ~i~i~G~nG~GKT-------Tll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~---~~~   65 (189)
T 2i3b_A            3 HVFLTGPPGVGKT-------TLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLS---RVG   65 (189)
T ss_dssp             CEEEESCCSSCHH-------HHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEE---ECC
T ss_pred             EEEEECCCCChHH-------HHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhh---ccc
Confidence            4679999999999       99999999988 889 9999987766666778899999974  1111   1110   000


Q ss_pred             CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHH-HHHH---HHhCCCCeEEeeC--CCCCCCCC
Q psy860          112 GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKL-STAM---ALIGDRDDGFQKL--PFSSQNLY  175 (178)
Q Consensus       112 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv-~IAr---aL~~~P~~lllDE--Pt~gLD~~  175 (178)
                       ....+           ..-.+...++...+|+|||+++ ++++   |++.+|+++|+||  |+..+|+.
T Consensus        66 -~~~~~-----------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~  123 (189)
T 2i3b_A           66 -LEPPP-----------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL  123 (189)
T ss_dssp             -CCCCS-----------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSH
T ss_pred             -ccCCc-----------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHH
Confidence             00000           0011234455667999999988 4455   6899999999999  88888864

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.35  E-value=7.6e-15  Score=129.98  Aligned_cols=69  Identities=7%  Similarity=-0.066  Sum_probs=51.5

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCCc-cccccccccccccc-----HHhhccceEEecCCCCCCCCCCHHHHHHH
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-QAAQNSLLMTNIMH-----LFQYLSGIGYCPQFNGINEHLTAQEMLEC  106 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-~~g~i~~~g~~~~~-----~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~  106 (178)
                      .+|+|+||||||       |+++.++|+..| ++|.++++|.++..     ..++++.++|+||++.+++.+||.+++.+
T Consensus        48 iaIvG~nGsGKS-------TLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~  120 (608)
T 3szr_A           48 IAVIGDQSSGKS-------SVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK  120 (608)
T ss_dssp             EECCCCTTSCHH-------HHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred             EEEECCCCChHH-------HHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence            679999999999       999999999878 89999999988532     23567789999999999999999999987


Q ss_pred             HH
Q psy860          107 FS  108 (178)
Q Consensus       107 ~~  108 (178)
                      ..
T Consensus       121 ~~  122 (608)
T 3szr_A          121 AQ  122 (608)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.33  E-value=6.6e-14  Score=128.90  Aligned_cols=107  Identities=13%  Similarity=-0.044  Sum_probs=66.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-CCcccccccccccccccHHhhccceEEecCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-SPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      ..+++||||+++.|+    +.+|.||||+|||       |+++.+... ..++.|                   +|+|+.
T Consensus       649 ~~v~ndisl~~~~g~----i~~ItGpNGsGKS-------TlLr~ial~~~~aq~G-------------------~~vpa~  698 (934)
T 3thx_A          649 AFIPNDVYFEKDKQM----FHIITGPNMGGKS-------TYIRQTGVIVLMAQIG-------------------CFVPCE  698 (934)
T ss_dssp             CCCCEEEEEETTTBC----EEEEECCTTSSHH-------HHHHHHHHHHHHHHHT-------------------CCBSEE
T ss_pred             eeecccceeecCCCe----EEEEECCCCCCHH-------HHHHHHHHHHHHHhcC-------------------Cccccc
Confidence            468899999999999    8889999999999       888876321 011111                   122222


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH--hCCCCeEEeeCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL--IGDRDDGFQKLPF  169 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL--~~~P~~lllDEPt  169 (178)
                      ......                        +++++..+|+.   +.....+|+++++++.+|+++  +++|+++||||||
T Consensus       699 ~~~~~~------------------------~d~i~~~ig~~---d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~  751 (934)
T 3thx_A          699 SAEVSI------------------------VDCILARVGAG---DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELG  751 (934)
T ss_dssp             EEEEEC------------------------CSEEEEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESCS
T ss_pred             cccchH------------------------HHHHHHhcCch---hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence            100000                        00111222332   223456788888888888888  9999999999999


Q ss_pred             CCCCCCC
Q psy860          170 SSQNLYN  176 (178)
Q Consensus       170 ~gLD~~~  176 (178)
                      +|+|+..
T Consensus       752 ~GlD~~~  758 (934)
T 3thx_A          752 RGTSTYD  758 (934)
T ss_dssp             CSSCHHH
T ss_pred             CCCCHHH
Confidence            9999853

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.31  E-value=2.6e-13  Score=112.09  Aligned_cols=43  Identities=19%  Similarity=0.155  Sum_probs=38.3

Q ss_pred             cccCcCCCCChHHHH------HHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          134 YRHRVSGRYSGGNKR------KLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       134 ~~~~~~~~LSgGqkQ------Rv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      ..++++.+|||||||      |+++|+||+.+|++|||||||+||||..
T Consensus       241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~  289 (339)
T 3qkt_A          241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER  289 (339)
T ss_dssp             TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHH
T ss_pred             cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHH
Confidence            346788999999999      6788889999999999999999999864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.31  E-value=1.8e-12  Score=103.95  Aligned_cols=138  Identities=12%  Similarity=-0.026  Sum_probs=89.3

Q ss_pred             hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccce
Q psy860            6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGI   85 (178)
Q Consensus         6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~i   85 (178)
                      +++|+   +.|+.+--.++.|+    +..|.|+||+|||       ||+..+++...  .|.++. |.....    ...+
T Consensus        13 i~tg~---~~ld~~lggl~~G~----i~~i~G~~GsGKT-------tl~~~l~~~~~--~g~~~~-g~~~~~----~~~v   71 (279)
T 1nlf_A           13 FAAAP---PPLDYVLPNMVAGT----VGALVSPGGAGKS-------MLALQLAAQIA--GGPDLL-EVGELP----TGPV   71 (279)
T ss_dssp             HHSCC---CCCCEEETTEETTS----EEEEEESTTSSHH-------HHHHHHHHHHH--TCCCTT-CCCCCC----CCCE
T ss_pred             hcCCC---CChheeECCccCCC----EEEEEcCCCCCHH-------HHHHHHHHHHh--cCCCcC-CCccCC----CccE
Confidence            34555   33443333688999    7789999999999       88887776432  355433 332211    2346


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           86 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      .|+..+..      ..+.......+. ..  .....+.++++.+.+.+..++.+..||+||+|++   ++++.+|+++++
T Consensus        72 ~~~~~e~~------~~~~~~r~~~~g-~~--~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livl  139 (279)
T 1nlf_A           72 IYLPAEDP------PTAIHHRLHALG-AH--LSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVL  139 (279)
T ss_dssp             EEEESSSC------HHHHHHHHHHHH-TT--SCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEE
T ss_pred             EEEECCCC------HHHHHHHHHHHH-hh--cChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEE
Confidence            67655432      211111111111 11  1234466778889888888889999999998865   688899999999


Q ss_pred             eCCCC--CCCCCC
Q psy860          166 KLPFS--SQNLYN  176 (178)
Q Consensus       166 DEPt~--gLD~~~  176 (178)
                      ||||+  ++|+..
T Consensus       140 De~~~~~~~d~~~  152 (279)
T 1nlf_A          140 DTLRRFHIEEENA  152 (279)
T ss_dssp             ECGGGGCCSCTTC
T ss_pred             CCHHHhcCCCcCc
Confidence            99999  999753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.31  E-value=4.4e-15  Score=123.40  Aligned_cols=115  Identities=11%  Similarity=-0.020  Sum_probs=80.3

Q ss_pred             ccccch-hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--Cccc----cc-ccccccccccHHhhccce
Q psy860           14 PQFNGI-NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQA----AQ-NSLLMTNIMHLFQYLSGI   85 (178)
Q Consensus        14 ~~~~~v-~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~----g~-i~~~g~~~~~~~~~~~~i   85 (178)
                      +.|+.+ ++.|+.|+    +..|.|+||+|||       ||+..+.+..  +|+.    |. +++++++..    .++++
T Consensus       118 ~~LD~lL~ggi~~G~----i~~I~G~~GsGKT-------TL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~----~~~~i  182 (349)
T 1pzn_A          118 KSLDKLLGGGIETQA----ITEVFGEFGSGKT-------QLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----RPERI  182 (349)
T ss_dssp             HHHHHHHTSSEESSE----EEEEEESTTSSHH-------HHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC----CHHHH
T ss_pred             HHHHHHhcCCCCCCe----EEEEECCCCCCHH-------HHHHHHHHHhccchhcCCCCCeEEEEeCCCCC----CHHHH
Confidence            678887 78999999    6779999999999       9999888886  6666    45 677776531    12345


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh-------C
Q psy860           86 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI-------G  158 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~-------~  158 (178)
                      ++++|...+++. ++.+|+.+.                            +.   .-|.+++|++.++++++       .
T Consensus       183 ~~i~q~~~~~~~-~v~~ni~~~----------------------------~~---~~~~~~~~~l~~~~~~~~~lS~G~~  230 (349)
T 1pzn_A          183 REIAQNRGLDPD-EVLKHIYVA----------------------------RA---FNSNHQMLLVQQAEDKIKELLNTDR  230 (349)
T ss_dssp             HHHHHTTTCCHH-HHGGGEEEE----------------------------EC---CSHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHcCCCHH-HHhhCEEEE----------------------------ec---CChHHHHHHHHHHHHHHHHhccccC
Confidence            666666544322 333322110                            00   01466788888888887       7


Q ss_pred             CCCeEEeeCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLY  175 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~  175 (178)
                      +|+++|+||||+++|+.
T Consensus       231 ~~~llIlDs~ta~ld~~  247 (349)
T 1pzn_A          231 PVKLLIVDSLTSHFRSE  247 (349)
T ss_dssp             CEEEEEEETSSTTHHHH
T ss_pred             CCCEEEEeCchHhhhhh
Confidence            89999999999999974

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.25  E-value=3.1e-12  Score=111.10  Aligned_cols=40  Identities=10%  Similarity=-0.077  Sum_probs=37.1

Q ss_pred             CcCCCC-ChHHHHHHHHHHHHhCCC--CeEEeeCCCCCCCCCC
Q psy860          137 RVSGRY-SGGNKRKLSTAMALIGDR--DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       137 ~~~~~L-SgGqkQRv~IAraL~~~P--~~lllDEPt~gLD~~~  176 (178)
                      +++.+| ||||||||+||+||+.+|  ++|||||||+|||+.+
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~  434 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA  434 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHH
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHH
Confidence            456778 999999999999999999  9999999999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.24  E-value=4.5e-15  Score=112.05  Aligned_cols=125  Identities=10%  Similarity=-0.014  Sum_probs=79.3

Q ss_pred             hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHH
Q psy860           22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQ  101 (178)
Q Consensus        22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~  101 (178)
                      .++.|+    +.+|+|+||||||       |+++.+.+.  ++.|.+.+++.++......++.++|++|...  +..++.
T Consensus         5 ~i~~g~----~i~l~G~~GsGKS-------Tl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~   69 (191)
T 1zp6_A            5 DDLGGN----ILLLSGHPGSGKS-------TIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIM   69 (191)
T ss_dssp             -CCTTE----EEEEEECTTSCHH-------HHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHH
T ss_pred             CCCCCe----EEEEECCCCCCHH-------HHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHH
Confidence            366777    6789999999999       999999887  6788888888765332222334677777543  356788


Q ss_pred             HHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc--cCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860          102 EMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR--HRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus       102 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~--~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                      +++.+...........  ..++.+++.+++....  +..+..+|+|++|++++||++..+|+++
T Consensus        70 ~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l  131 (191)
T 1zp6_A           70 QIAADVAGRYAKEGYF--VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL  131 (191)
T ss_dssp             HHHHHHHHHHHHTSCE--EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred             HHHHHHHHHHhccCCe--EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence            8876643221000000  0001111112222222  3456789999999999999999999876

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.23  E-value=1.4e-13  Score=102.36  Aligned_cols=78  Identities=13%  Similarity=-0.015  Sum_probs=66.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      ..++++|||+|++|+    +.+|+|+||||||       ||++.+.|+. |++|+|.++|.++.+..+.+   .+++|++
T Consensus        20 ~~~l~~vsl~i~~Ge----~v~L~G~nGaGKT-------TLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~---~~~~q~~   84 (158)
T 1htw_A           20 KFAEILLKLHTEKAI----MVYLNGDLGAGKT-------TLTRGMLQGI-GHQGNVKSPTYTLVEEYNIA---GKMIYHF   84 (158)
T ss_dssp             HHHHHHHHHCCSSCE----EEEEECSTTSSHH-------HHHHHHHHHT-TCCSCCCCCTTTCEEEEEET---TEEEEEE
T ss_pred             HHHHhccccccCCCC----EEEEECCCCCCHH-------HHHHHHHHhC-CCCCeEEECCEeeeeeccCC---Ccceecc
Confidence            468999999999999    8889999999999       9999999999 99999999998875322222   2799998


Q ss_pred             CCCCCCCHHHHHHH
Q psy860           93 GINEHLTAQEMLEC  106 (178)
Q Consensus        93 ~l~~~ltv~e~l~~  106 (178)
                      .++ .+|+.|++.+
T Consensus        85 ~l~-~ltv~e~l~~   97 (158)
T 1htw_A           85 DLY-RLADPEELEF   97 (158)
T ss_dssp             ECT-TCSCTTHHHH
T ss_pred             ccc-cCCcHHHHHH
Confidence            888 8999999865

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.23  E-value=1.3e-14  Score=119.97  Aligned_cols=148  Identities=9%  Similarity=-0.024  Sum_probs=99.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH------hhccceE
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF------QYLSGIG   86 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~------~~~~~ig   86 (178)
                      ..+++++|+++..|+    +.+|+|+||+|||       |+++.+.++..|++|.+.+.+.++....      ..+++++
T Consensus        42 ~~~l~~i~~~~~~g~----~v~i~G~~GaGKS-------TLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~  110 (337)
T 2qm8_A           42 RDLIDAVLPQTGRAI----RVGITGVPGVGKS-------TTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA  110 (337)
T ss_dssp             HHHHHHHGGGCCCSE----EEEEECCTTSCHH-------HHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGST
T ss_pred             HHHHHhCCcccCCCe----EEEEECCCCCCHH-------HHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhhe
Confidence            468999999999999    8889999999999       9999999999999999999988764332      3466799


Q ss_pred             EecCCCCCCCCCC------------HHHHHHHHHH-----------------------------hcCCCCCC----hhHH
Q psy860           87 YCPQFNGINEHLT------------AQEMLECFSA-----------------------------LRGIPGVK----SGPI  121 (178)
Q Consensus        87 ~v~Q~~~l~~~lt------------v~e~l~~~~~-----------------------------~~~~~~~~----~~~~  121 (178)
                      +++|++.++...+            +.|.+.....                             .......+    ..+.
T Consensus       111 ~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~  190 (337)
T 2qm8_A          111 RLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKG  190 (337)
T ss_dssp             TGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTT
T ss_pred             eeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHH
Confidence            9999987765321            2222211100                             00000000    0011


Q ss_pred             HHHHHHHcCCCccccC-cCCCCChHHHHHHHHHHHHhC------CCCeEEeeCCCCCCCCCC
Q psy860          122 IDYWIDLLGLTEYRHR-VSGRYSGGNKRKLSTAMALIG------DRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       122 ~~~~l~~~~L~~~~~~-~~~~LSgGqkQRv~IAraL~~------~P~~lllDEPt~gLD~~~  176 (178)
                      +.+....+.+ +..|. ...++|+|++|++..|++++.      +|++++    ||++|+.+
T Consensus       191 i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~g  247 (337)
T 2qm8_A          191 IFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKG  247 (337)
T ss_dssp             HHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBS
T ss_pred             HhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCC
Confidence            1111111222 34443 235689999999999999987      688876    99999865

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.22  E-value=2.1e-13  Score=110.71  Aligned_cols=123  Identities=14%  Similarity=-0.037  Sum_probs=82.5

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHH---
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFS---  108 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~---  108 (178)
                      +.+|.|++|||||       |+.+.+.++..++ |.            . ++.+.+|+|+..+++ .+.++++.+..   
T Consensus        33 ii~I~G~sGsGKS-------Tla~~L~~~l~~~-g~------------~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~   90 (290)
T 1odf_A           33 FIFFSGPQGSGKS-------FTSIQIYNHLMEK-YG------------G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNN   90 (290)
T ss_dssp             EEEEECCTTSSHH-------HHHHHHHHHHHHH-HG------------G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHhhhc-CC------------C-CceEEEeccccccCC-hHHHHHHhcccccc
Confidence            6889999999999       7777777665543 10            0 234556699876654 46777776541   


Q ss_pred             ---HhcCCCCCChhHHHHHHHHHcCCC--------ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          109 ---ALRGIPGVKSGPIIDYWIDLLGLT--------EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       109 ---~~~~~~~~~~~~~~~~~l~~~~L~--------~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                         ..++.+.....+...+.++.+.-.        -....+...+||||+||+.+|++...+|++||+||||+++|+..
T Consensus        91 ~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A           91 KLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             GGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred             chhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence               112233333445566677766432        12334567899999999999844333999999999999999864

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.20  E-value=1.7e-12  Score=108.20  Aligned_cols=42  Identities=12%  Similarity=-0.014  Sum_probs=38.0

Q ss_pred             cCcCC-CCChHHHHHHHHHHHHh---------CCCCeEEeeCCCCCCCCCCC
Q psy860          136 HRVSG-RYSGGNKRKLSTAMALI---------GDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       136 ~~~~~-~LSgGqkQRv~IAraL~---------~~P~~lllDEPt~gLD~~~~  177 (178)
                      ++++. .||+|||||++||++|+         .+|++|+|||||++||+..+
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~  310 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRR  310 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHH
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHH
Confidence            45677 79999999999999999         89999999999999998643

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.18  E-value=1.8e-12  Score=117.85  Aligned_cols=110  Identities=8%  Similarity=-0.054  Sum_probs=69.1

Q ss_pred             CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-cccccccccccccccHHhhccceEEec
Q psy860           11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-FQAAQNSLLMTNIMHLFQYLSGIGYCP   89 (178)
Q Consensus        11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~~~g~i~~~g~~~~~~~~~~~~ig~v~   89 (178)
                      |...+++||||+ +.|+    +.+|.||||+|||       |+++.+.++.. ++.|.      .+.   ..+..+++++
T Consensus       593 ~~~~vlndisl~-~~g~----i~~ItGpNGsGKS-------TlLr~iagl~~~~q~G~------~vp---a~~~~i~~~~  651 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQRR----MLIITGPNMGGKS-------TYMRQTALIALMAYIGS------YVP---AQKVEIGPID  651 (800)
T ss_dssp             SSCCCCEEEEEC-SSSC----EEEEECCTTSSHH-------HHHHHHHHHHHHHTTTC------CBS---SSEEEECCCC
T ss_pred             CCceeeeccccc-CCCc----EEEEECCCCCChH-------HHHHHHHHHHHHHhcCc------ccc---hhcccceeHH
Confidence            345789999999 8999    8889999999999       99998887632 12221      111   0112355554


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |   ++..+++.+++..                               ..+.+|+++++ +..+...+++|+++|||||+
T Consensus       652 ~---i~~~~~~~d~l~~-------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~  696 (800)
T 1wb9_A          652 R---IFTRVGAADDLAS-------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIG  696 (800)
T ss_dssp             E---EEEEEC------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCC
T ss_pred             H---HHhhCCHHHHHHh-------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCC
Confidence            4   3444455444321                               12346777765 44445568999999999999


Q ss_pred             CCCCCCC
Q psy860          170 SSQNLYN  176 (178)
Q Consensus       170 ~gLD~~~  176 (178)
                      +|+|+..
T Consensus       697 ~Gtd~~d  703 (800)
T 1wb9_A          697 RGTSTYD  703 (800)
T ss_dssp             CCSSSSH
T ss_pred             CCCChhH
Confidence            9999863

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.18  E-value=4.4e-14  Score=120.04  Aligned_cols=132  Identities=11%  Similarity=0.019  Sum_probs=93.4

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------HhhccceEEe
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQYLSGIGYC   88 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~~~~ig~v   88 (178)
                      +|+++ +. .+|+    +.+|.|+||||||       |+++.+++..+|+.|.|.+.+.++...      .++++.+++.
T Consensus       158 ~L~~l-~~-~~gg----ii~I~GpnGSGKT-------TlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~  224 (418)
T 1p9r_A          158 NFRRL-IK-RPHG----IILVTGPTGSGKS-------TTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMT  224 (418)
T ss_dssp             HHHHH-HT-SSSE----EEEEECSTTSCHH-------HHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBC
T ss_pred             HHHHH-HH-hcCC----eEEEECCCCCCHH-------HHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcC
Confidence            56666 43 5666    6789999999999       999999999989999998888776311      1234456665


Q ss_pred             c---------CCCCC--CCC----CCHHHHHHHHHHh----cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHH
Q psy860           89 P---------QFNGI--NEH----LTAQEMLECFSAL----RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK  149 (178)
Q Consensus        89 ~---------Q~~~l--~~~----ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR  149 (178)
                      |         |+|.+  +..    .|+.+++.+...-    .........+ +.+.+..+++.+..  .+.+|||||+||
T Consensus       225 f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg~~QR  301 (418)
T 1p9r_A          225 FARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGVLAQR  301 (418)
T ss_dssp             HHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEEEEEE
T ss_pred             HHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHHHHHH
Confidence            5         88765  233    5788888764311    1112223333 33457788987653  678999999999


Q ss_pred             HHHHHHHhCCCCeEE
Q psy860          150 LSTAMALIGDRDDGF  164 (178)
Q Consensus       150 v~IAraL~~~P~~ll  164 (178)
                        |||+|+.+|++..
T Consensus       302 --LaraL~~~p~~~~  314 (418)
T 1p9r_A          302 --LVRTLCPDCKEPY  314 (418)
T ss_dssp             --EEEEECTTTCEEE
T ss_pred             --hhhhhcCCCCccC
Confidence              9999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.17  E-value=1.1e-14  Score=109.68  Aligned_cols=107  Identities=8%  Similarity=0.000  Sum_probs=67.6

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---cccccccccccccH-----Hhhc-cceE----EecCCCCCCCCC
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMHL-----FQYL-SGIG----YCPQFNGINEHL   98 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~~-----~~~~-~~ig----~v~Q~~~l~~~l   98 (178)
                      ..+|+|+||||||       ||++.+.++.+|+   .|.+.+++.++.++     ..+| +.+|    +++|++.++.  
T Consensus         4 ~v~IvG~SGsGKS-------TL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i--   74 (171)
T 2f1r_A            4 ILSIVGTSDSGKT-------TLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI--   74 (171)
T ss_dssp             EEEEEESCHHHHH-------HHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--
Confidence            5789999999999       9999999998888   89999999875443     2444 3577    7888765441  


Q ss_pred             CHHHHHHHHHHhcCCCCCChhHHHHHHHHH-c-CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860           99 TAQEMLECFSALRGIPGVKSGPIIDYWIDL-L-GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG  163 (178)
Q Consensus        99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l  163 (178)
                        .+         .  ..+....+.++++. + +++...   ...|||||+||++||||++.+|++.
T Consensus        75 --~~---------~--~~~~~a~l~~~i~~~l~g~dt~i---~EglSgGq~qri~lARall~~p~i~  125 (171)
T 2f1r_A           75 --RR---------V--SEEEGNDLDWIYERYLSDYDLVI---TEGFSKAGKDRIVVVKKPEEVEHFR  125 (171)
T ss_dssp             --EE---------C--CHHHHTCHHHHHHHHTTTCSEEE---EESCGGGCCCEEEECSSGGGGGGGC
T ss_pred             --ec---------C--ChhhhhCHHHHHHhhCCCCCEEE---ECCcCCCCCcEEEEEecccCCCccC
Confidence              00         0  00001123444444 3 333211   2249999999999999999999873

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.15  E-value=2.5e-13  Score=117.21  Aligned_cols=135  Identities=15%  Similarity=0.081  Sum_probs=92.7

Q ss_pred             ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------Hh--hccceEE
Q psy860           16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQ--YLSGIGY   87 (178)
Q Consensus        16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~--~~~~ig~   87 (178)
                      -++|||++..|+    +.+|+|+||||||       |+++++.++.+++.|.|.+.+.+....      ..  .+++|+|
T Consensus       283 ~~~Isl~i~~Ge----VI~LVGpNGSGKT-------TLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~v  351 (503)
T 2yhs_A          283 DEPLNVEGKAPF----VILMVGVNGVGKT-------TTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPV  351 (503)
T ss_dssp             BCCCCCCSCTTE----EEEEECCTTSSHH-------HHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCE
T ss_pred             CCCceeeccCCe----EEEEECCCcccHH-------HHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceE
Confidence            578999999999    7889999999999       999999999999999999987665332      22  3568999


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH-hCCCC-eEEe
Q psy860           88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL-IGDRD-DGFQ  165 (178)
Q Consensus        88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL-~~~P~-~lll  165 (178)
                      ++|+..+++..++++++.++... +..   .   +  +++..|..+.....+.+|    +|++.+++++ ...|+ ++|.
T Consensus       352 V~Q~~~~~p~~tV~e~l~~a~~~-~~D---v---V--LIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLv  418 (503)
T 2yhs_A          352 IAQHTGADSASVIFDAIQAAKAR-NID---V---L--IADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLT  418 (503)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHT-TCS---E---E--EECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEE
T ss_pred             EecccCcCHHHHHHHHHHHHHhc-CCC---E---E--EEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEE
Confidence            99998888888999999876432 110   0   0  112223222211222223    4778888866 44574 4545


Q ss_pred             eCCCCCCCC
Q psy860          166 KLPFSSQNL  174 (178)
Q Consensus       166 DEPt~gLD~  174 (178)
                      ..||+|.|.
T Consensus       419 LDattGq~a  427 (503)
T 2yhs_A          419 IDASTGQNA  427 (503)
T ss_dssp             EEGGGTHHH
T ss_pred             ecCcccHHH
Confidence            558887653

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.14  E-value=3.5e-13  Score=114.53  Aligned_cols=143  Identities=10%  Similarity=-0.045  Sum_probs=86.2

Q ss_pred             cCccccccchhhhccHHHHHHHh--hhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccce
Q psy860           10 IGYCPQFNGINEHLTAQEMLECF--SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGI   85 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~--~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~i   85 (178)
                      +|..+ |++|||+++.|+    +  .+|+|+||+|||       ||++.+.|+.        ++|.++..  ....++.+
T Consensus        25 y~~~~-L~~vsl~i~~Ge----i~~vaLvG~nGaGKS-------TLln~L~G~~--------l~g~~~~~~~~~~~~~~i   84 (427)
T 2qag_B           25 FDSLP-DQLVNKSVSQGF----CFNILCVGETGLGKS-------TLMDTLFNTK--------FEGEPATHTQPGVQLQSN   84 (427)
T ss_dssp             CC--C-HHHHHHSCC-CC----EEEEEEECSTTSSSH-------HHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred             ECCee-cCCCceEecCCC----eeEEEEECCCCCCHH-------HHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence            34456 999999999999    7  789999999999       9999999873        22322221  11234579


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHhcC-CCCC----ChhHHHHHHHHHc-CCC----ccccCcC-----------CCCCh
Q psy860           86 GYCPQFNGINEHLTAQEMLECFSALRG-IPGV----KSGPIIDYWIDLL-GLT----EYRHRVS-----------GRYSG  144 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~----~~~~~~~~~l~~~-~L~----~~~~~~~-----------~~LSg  144 (178)
                      +|++|++.+++.+|+.|++.+...... ....    ...+...++++.. ++.    ...+.++           ..|+-
T Consensus        85 ~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~  164 (427)
T 2qag_B           85 TYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKS  164 (427)
T ss_dssp             EEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CH
T ss_pred             EEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCH
Confidence            999999888888888887654211000 0000    0123344555554 443    1122221           13554


Q ss_pred             HHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860          145 GNKRKLSTAMALIGDRDDGFQKLPFSSQNLY  175 (178)
Q Consensus       145 GqkQRv~IAraL~~~P~~lllDEPt~gLD~~  175 (178)
                      ..   +.|+++|..+++++++||||..|.+.
T Consensus       165 ~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~  192 (427)
T 2qag_B          165 LD---LVTMKKLDSKVNIIPIIAKADAISKS  192 (427)
T ss_dssp             HH---HHHHHHTCSCSEEEEEESCGGGSCHH
T ss_pred             HH---HHHHHHHhhCCCEEEEEcchhccchH
Confidence            44   89999999999999999999988653

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.11  E-value=7e-11  Score=98.54  Aligned_cols=40  Identities=23%  Similarity=0.189  Sum_probs=35.6

Q ss_pred             CcCCCCChHHHHHH------HHHHHHhCC-CCeEEeeCCCCCCCCCC
Q psy860          137 RVSGRYSGGNKRKL------STAMALIGD-RDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       137 ~~~~~LSgGqkQRv------~IAraL~~~-P~~lllDEPt~gLD~~~  176 (178)
                      +++..|||||||||      ++|++++.+ |+++||||||+|||+..
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~  322 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR  322 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence            55678999999988      567899999 99999999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.10  E-value=1e-12  Score=106.98  Aligned_cols=108  Identities=10%  Similarity=-0.021  Sum_probs=73.8

Q ss_pred             hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc---cccccccHHhh--ccceEEecCCCC---
Q psy860           22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL---LMTNIMHLFQY--LSGIGYCPQFNG---   93 (178)
Q Consensus        22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~---~g~~~~~~~~~--~~~ig~v~Q~~~---   93 (178)
                      ++..|+    +.+++|+||+|||       ||++.+.|+.+|+.|.+.+   +|+++....+.  .+.+||++|.|.   
T Consensus       165 ~~l~ge----iv~l~G~sG~GKS-------Tll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~  233 (301)
T 1u0l_A          165 EYLKGK----ISTMAGLSGVGKS-------SLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN  233 (301)
T ss_dssp             HHHSSS----EEEEECSTTSSHH-------HHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred             HHhcCC----eEEEECCCCCcHH-------HHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence            444566    6789999999999       9999999999999999998   88776543221  136899999975   


Q ss_pred             -------------CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCCh
Q psy860           94 -------------INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSG  144 (178)
Q Consensus        94 -------------l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSg  144 (178)
                                   +++++|+ +|+.+..   .....+...++.++++.++|. +..++++..||.
T Consensus       234 ~~~~~~~~~~~~~l~~~~~~-~n~~~~~---~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          234 LEINDIEPEELKHYFKEFGD-KQCFFSD---CNHVDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             CCCCSSCHHHHGGGSTTSSS-CCCSSTT---CCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             cCCCcCCHHHHHHHHHhccc-ccCcCCC---CcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence                         4677788 7776531   112345567899999999996 778888988885

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.10  E-value=5.4e-13  Score=102.89  Aligned_cols=39  Identities=10%  Similarity=0.115  Sum_probs=30.7

Q ss_pred             ccccchh-hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860           14 PQFNGIN-EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF   63 (178)
Q Consensus        14 ~~~~~v~-~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~   63 (178)
                      +.|+.+- -.|++||    +.+|+|+||||||       |+++.+++...+
T Consensus        12 ~~LD~~l~ggi~~G~----~~~l~G~nGsGKS-------Tll~~l~g~~~~   51 (231)
T 4a74_A           12 KSLDKLLGGGIETQA----ITEVFGEFGSGKT-------QLAHTLAVMVQL   51 (231)
T ss_dssp             HHHHHHTTSSEESSE----EEEEEESTTSSHH-------HHHHHHHHHTTS
T ss_pred             hhHHhHhcCCCCCCc----EEEEECCCCCCHH-------HHHHHHHHHHhc
Confidence            4455443 3788999    8889999999999       999999885444

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.09  E-value=1.8e-11  Score=102.00  Aligned_cols=67  Identities=9%  Similarity=0.051  Sum_probs=53.7

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEec-CCC
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP-QFN   92 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~-Q~~   92 (178)
                      +++++||.|++|+    ..+|.|+||+|||       |+++.+.++.+|++|.|.+++.........++.+++++ |++
T Consensus       164 ~~~~l~~~i~~G~----~i~ivG~sGsGKS-------Tll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~  231 (361)
T 2gza_A          164 YMSFLRRAVQLER----VIVVAGETGSGKT-------TLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEA  231 (361)
T ss_dssp             HHHHHHHHHHTTC----CEEEEESSSSCHH-------HHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC---
T ss_pred             HHHHHHHHHhcCC----EEEEECCCCCCHH-------HHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcc
Confidence            3499999999999    7889999999999       99999999999999999998753222233566789998 654

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.06  E-value=4.6e-11  Score=101.36  Aligned_cols=40  Identities=15%  Similarity=0.022  Sum_probs=35.9

Q ss_pred             CcCCCCChHHHHHHHHHHHHh----CCCCeEEeeCCCCCCCCCC
Q psy860          137 RVSGRYSGGNKRKLSTAMALI----GDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       137 ~~~~~LSgGqkQRv~IAraL~----~~P~~lllDEPt~gLD~~~  176 (178)
                      +++..||||||||++||++|+    .+|+++||||||++||+.+
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~  372 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITN  372 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHH
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHH
Confidence            345569999999999999999    6899999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.05  E-value=3.4e-12  Score=105.03  Aligned_cols=137  Identities=15%  Similarity=0.062  Sum_probs=87.4

Q ss_pred             hhccCccccccchhhhccHHHHHH---HhhhhhCCCCCCccchHHHHHHHhhhhhccC----CcccccccccccccccH-
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLE---CFSALRGIPGVKSGPIIDYWIDLLGSAIRFS----PFQAAQNSLLMTNIMHL-   78 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~---~~~~i~G~~g~gk~~~~~~~itll~~~~~~~----~~~~g~i~~~g~~~~~~-   78 (178)
                      .+-+|-..+++++++.+..|..-.   -...+.||||+|||       |+++.+.+..    .+++|.+...+.++... 
T Consensus        25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKT-------TLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~   97 (334)
T 1in4_A           25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT-------TLAHIIASELQTNIHVTSGPVLVKQGDMAAIL   97 (334)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHH-------HHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHH-------HHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence            445566678999999999872110   05679999999999       8888888776    67788887766665443 


Q ss_pred             Hhh-ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCC----CCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHH
Q psy860           79 FQY-LSGIGYCPQFNGINEHLTAQEMLECFSALRGIP----GVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTA  153 (178)
Q Consensus        79 ~~~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IA  153 (178)
                      ... +..|.+++|.+.+.+  ++.|++..........    .....+.+...++.+++.. +.+.+..||+|++||+.++
T Consensus        98 ~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~  174 (334)
T 1in4_A           98 TSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII  174 (334)
T ss_dssp             HHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE
T ss_pred             HHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce
Confidence            222 457999999877654  6777775433322211    1122233444555566654 6778899999999998654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.04  E-value=5.8e-15  Score=121.09  Aligned_cols=127  Identities=11%  Similarity=-0.016  Sum_probs=81.7

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccC--------CcccccccccccccccH-----------------HhhccceE
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFS--------PFQAAQNSLLMTNIMHL-----------------FQYLSGIG   86 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~--------~~~~g~i~~~g~~~~~~-----------------~~~~~~ig   86 (178)
                      +.+|.|+||||||       |+++.+.+..        .++.|++.++|..+...                 .++++.++
T Consensus         6 v~~i~G~~GaGKT-------Tll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~   78 (318)
T 1nij_A            6 VTLLTGFLGAGKT-------TLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALL   78 (318)
T ss_dssp             EEEEEESSSSSCH-------HHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHH
T ss_pred             EEEEEecCCCCHH-------HHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHH
Confidence            4578999999999       9999999886        78999999999877542                 12344577


Q ss_pred             Ee---cCCCCCCCCCCHHHHHHHH--H----HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh
Q psy860           87 YC---PQFNGINEHLTAQEMLECF--S----ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI  157 (178)
Q Consensus        87 ~v---~Q~~~l~~~ltv~e~l~~~--~----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~  157 (178)
                      ++   +|++.++++.++.|+..++  .    .+...+......++..++..+++.+..++.. ++|+||+||+..+++++
T Consensus        79 ~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill  157 (318)
T 1nij_A           79 DLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILL  157 (318)
T ss_dssp             HHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEE
T ss_pred             HHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEE
Confidence            76   5766555566665544321  0    0000000000001112233345554444443 79999999999999999


Q ss_pred             CCCCeEEeeCC
Q psy860          158 GDRDDGFQKLP  168 (178)
Q Consensus       158 ~~P~~lllDEP  168 (178)
                      .+|+++  |||
T Consensus       158 ~k~dl~--de~  166 (318)
T 1nij_A          158 TKTDVA--GEA  166 (318)
T ss_dssp             ECTTTC--SCT
T ss_pred             ECcccC--CHH
Confidence            999988  998

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.03  E-value=5.7e-12  Score=103.04  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=72.7

Q ss_pred             hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc---cccccccHHhhc-cceEEecCCCCCCC
Q psy860           21 EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL---LMTNIMHLFQYL-SGIGYCPQFNGINE   96 (178)
Q Consensus        21 ~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~---~g~~~~~~~~~~-~~ig~v~Q~~~l~~   96 (178)
                      +++..|+    ..+++|+||+|||       ||++.+.|...++.|.+.+   .|+..+...+.. ..+||++|.|.+.+
T Consensus       168 ~~~~~G~----~~~lvG~sG~GKS-------TLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~  236 (307)
T 1t9h_A          168 IPHFQDK----TTVFAGQSGVGKS-------SLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSS  236 (307)
T ss_dssp             GGGGTTS----EEEEEESHHHHHH-------HHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSS
T ss_pred             HhhcCCC----EEEEECCCCCCHH-------HHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccc
Confidence            6778888    7889999999999       9999999999999999988   776654332322 23899999998765


Q ss_pred             ----CCCHHHHHH-HHHH---h------cC-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHH
Q psy860           97 ----HLTAQEMLE-CFSA---L------RG-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK  149 (178)
Q Consensus        97 ----~ltv~e~l~-~~~~---~------~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR  149 (178)
                          .+|+ |++. ++..   +      .+ ....+...++.++++.++|.+...+....++.|++||
T Consensus       237 ~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          237 LEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             CCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             cccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence                6789 7773 2221   1      11 2233455679999999999876656666777788773

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.03  E-value=3e-11  Score=100.65  Aligned_cols=45  Identities=7%  Similarity=0.049  Sum_probs=34.4

Q ss_pred             ccccchhh-------hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-ccccc
Q psy860           14 PQFNGINE-------HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-AAQNS   69 (178)
Q Consensus        14 ~~~~~v~~-------~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-~g~i~   69 (178)
                      +.|+++++       .+.+|+    +.+|.|+||||||       |+++.++++.+|+ .+.+.
T Consensus       104 ~~l~~lg~~~~l~~l~~~~~g----~i~I~GptGSGKT-------TlL~~l~g~~~~~~~~~i~  156 (356)
T 3jvv_A          104 LTMEELGMGEVFKRVSDVPRG----LVLVTGPTGSGKS-------TTLAAMLDYLNNTKYHHIL  156 (356)
T ss_dssp             CCTTTTTCCHHHHHHHHCSSE----EEEEECSTTSCHH-------HHHHHHHHHHHHHCCCEEE
T ss_pred             CCHHHcCChHHHHHHHhCCCC----EEEEECCCCCCHH-------HHHHHHHhcccCCCCcEEE
Confidence            44555554       556666    6789999999999       9999999998887 45543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.02  E-value=4.3e-11  Score=100.11  Aligned_cols=95  Identities=13%  Similarity=0.024  Sum_probs=72.0

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-cccccccccccccHHhhccceEEecC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-AAQNSLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-~g~i~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      ..++|++++  +++|+    +.+|.|+||||||       |+++.+.++.+|+ +|.|.+.+.++. . ..+..+++++|
T Consensus       124 ~~~~l~~l~--~~~g~----~i~ivG~~GsGKT-------Tll~~l~~~~~~~~~g~I~~~e~~~e-~-~~~~~~~~v~Q  188 (372)
T 2ewv_A          124 LPDKVLELC--HRKMG----LILVTGPTGSGKS-------TTIASMIDYINQTKSYHIITIEDPIE-Y-VFKHKKSIVNQ  188 (372)
T ss_dssp             CCSSHHHHT--TSSSE----EEEEECSSSSSHH-------HHHHHHHHHHHHHSCCEEEEEESSCC-S-CCCCSSSEEEE
T ss_pred             CCHHHHHHh--hcCCC----EEEEECCCCCCHH-------HHHHHHHhhcCcCCCcEEEEecccHh-h-hhccCceEEEe
Confidence            345677765  78888    7889999999999       9999999998887 899877665543 1 23456778877


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      ..                                    +++.      +..|      +.+|+++|..+|+++++|||+
T Consensus       189 ~~------------------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~  219 (372)
T 2ewv_A          189 RE------------------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR  219 (372)
T ss_dssp             EE------------------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC
T ss_pred             ee------------------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC
Confidence            41                                    2221      2334      469999999999999999999

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.02  E-value=9.5e-12  Score=103.50  Aligned_cols=138  Identities=12%  Similarity=0.029  Sum_probs=80.3

Q ss_pred             cccchhhhccH--HHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc----cccccc----ccccc-cHHhhcc
Q psy860           15 QFNGINEHLTA--QEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA----AQNSLL----MTNIM-HLFQYLS   83 (178)
Q Consensus        15 ~~~~v~~~~~~--g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~----g~i~~~----g~~~~-~~~~~~~   83 (178)
                      +.+.|++.|.+  |+    ..+|+|+||||||       ||++.+.|+.+|++    |.+.++    +.+.. ...++ +
T Consensus       157 ~~~~v~~~v~~~lg~----k~~IvG~nGsGKS-------TLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~  224 (365)
T 1lw7_A          157 YWKFIPKEARPFFAK----TVAILGGESSGKS-------VLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-P  224 (365)
T ss_dssp             GGGGSCTTTGGGTCE----EEEEECCTTSHHH-------HHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-H
T ss_pred             ChhhCCHHHHHhhhC----eEEEECCCCCCHH-------HHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-H
Confidence            35679999999  99    7889999999999       99999999999999    888764    32221 11222 3


Q ss_pred             ceEEecCCCCCCCCCCHHHHH-----------HHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccC---c----CCCCCh
Q psy860           84 GIGYCPQFNGINEHLTAQEML-----------ECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHR---V----SGRYSG  144 (178)
Q Consensus        84 ~ig~v~Q~~~l~~~ltv~e~l-----------~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~---~----~~~LSg  144 (178)
                      .|++++|++.++ ..|+.+|+           .+.....+    ..+..+..++...+..- ..+.   +    ...+|+
T Consensus       225 ~I~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sl  299 (365)
T 1lw7_A          225 QMALGHQRYIDY-AVRHSHKIAFIDTDFITTQAFCIQYEG----KAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLG  299 (365)
T ss_dssp             HHHHHHHHHHHH-HHHHCSSEEEESSCHHHHHHHHHHHHS----CCCHHHHHHHHHSCCSEEEEEECCCC----------
T ss_pred             HHHHHHHHHHHH-HHhccCCEEEEeCCchHHHHHHHHHcC----CCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCc
Confidence            466666643211 11222211           11111111    11233344443333321 1121   1    135899


Q ss_pred             HHHHHHHHHHHH---hC--CCCeEEeeCCC
Q psy860          145 GNKRKLSTAMAL---IG--DRDDGFQKLPF  169 (178)
Q Consensus       145 GqkQRv~IAraL---~~--~P~~lllDEPt  169 (178)
                      |++||..++++|   ..  ++.++++|||+
T Consensus       300 d~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          300 SQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             -CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            999999999999   66  89999999996

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.02  E-value=4.4e-12  Score=97.61  Aligned_cols=126  Identities=10%  Similarity=-0.074  Sum_probs=76.3

Q ss_pred             ccccchhh-hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           14 PQFNGINE-HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        14 ~~~~~v~~-~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      +.|+++.. .+++|+    +.+|.|+||+|||       |++..+++...++.+.+.+.+.+...  ..+....+++.+|
T Consensus        10 ~~Ld~~~~ggi~~G~----~~~i~G~~GsGKT-------tl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   78 (235)
T 2w0m_A           10 LDFDKLIQGGIPQGF----FIALTGEPGTGKT-------IFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFE   78 (235)
T ss_dssp             HHHHGGGTTSEETTC----EEEEECSTTSSHH-------HHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCG
T ss_pred             hHHHHHhcCCCcCCC----EEEEEcCCCCCHH-------HHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHH
Confidence            78999998 899999    7789999999999       88888887766666665444432211  1111112222222


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC--eEEeeCC
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD--DGFQKLP  168 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~--~lllDEP  168 (178)
                      ..... .+.+                     ++.....++ ...   .....|.++.++...+.+...+|+  ++++|||
T Consensus        79 ~~~~~-~~~~---------------------~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~  132 (235)
T 2w0m_A           79 EYIEK-KLII---------------------IDALMKEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSV  132 (235)
T ss_dssp             GGBTT-TEEE---------------------EECCC-----CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred             HHhhC-CEEE---------------------EeccccccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence            11000 0000                     000000011 111   123449999999988888888999  9999999


Q ss_pred             CCCC--CCCC
Q psy860          169 FSSQ--NLYN  176 (178)
Q Consensus       169 t~gL--D~~~  176 (178)
                      |+++  |+..
T Consensus       133 ~~~~~~d~~~  142 (235)
T 2w0m_A          133 SALFLDKPAM  142 (235)
T ss_dssp             GGGSSSCGGG
T ss_pred             hHhhcCCHHH
Confidence            9887  8743

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.93  E-value=1.4e-11  Score=101.62  Aligned_cols=121  Identities=10%  Similarity=-0.005  Sum_probs=85.3

Q ss_pred             hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhc--cceEEecCCCC
Q psy860           22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYL--SGIGYCPQFNG   93 (178)
Q Consensus        22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~--~~ig~v~Q~~~   93 (178)
                      ..+.|+    +.+++|+||+|||       |+++.+.++.+|++|.+.+.+.++..      ...++  .++.+++|...
T Consensus       125 ~~~~g~----vi~lvG~nGaGKT-------Tll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~  193 (328)
T 3e70_C          125 KAEKPY----VIMFVGFNGSGKT-------TTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG  193 (328)
T ss_dssp             SSCSSE----EEEEECCTTSSHH-------HHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT
T ss_pred             cCCCCe----EEEEECCCCCCHH-------HHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc
Confidence            335678    7889999999999       99999999999999999999988643      22223  35669999999


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      ++|.+++++++.+...... .   .     -+++..|..+..+..+.+||       .+++++..++.++++|.+|
T Consensus       194 ~~p~~~v~e~l~~~~~~~~-d---~-----vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t  253 (328)
T 3e70_C          194 ADPAAVAYDAIQHAKARGI-D---V-----VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALA  253 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTC-S---E-----EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG
T ss_pred             CCHHHHHHHHHHHHHhccc-h---h-----hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHH
Confidence            9999999999986543210 0   0     01222344333333444444       3889999888888999554

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.93  E-value=1.2e-10  Score=89.08  Aligned_cols=111  Identities=8%  Similarity=-0.003  Sum_probs=69.4

Q ss_pred             ccccchhh-hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           14 PQFNGINE-HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        14 ~~~~~v~~-~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      +.|+.+.. .++.|+    +..|.|++|+|||       |++..+++  ....                  ++.|+..+.
T Consensus         7 ~~LD~~l~Ggi~~G~----~~~i~G~~GsGKT-------tl~~~l~~--~~~~------------------~v~~i~~~~   55 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGV----LTQVYGPYASGKT-------TLALQTGL--LSGK------------------KVAYVDTEG   55 (220)
T ss_dssp             HHHHHHTTSSBCTTS----EEEEECSTTSSHH-------HHHHHHHH--HHCS------------------EEEEEESSC
T ss_pred             HHHHHhhcCCCcCCE----EEEEECCCCCCHH-------HHHHHHHH--HcCC------------------cEEEEECCC
Confidence            78898886 899999    7789999999999       88888877  2111                  234444332


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHH--HHHHHHHHHHhCC-CCeEEeeCCC
Q psy860           93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGN--KRKLSTAMALIGD-RDDGFQKLPF  169 (178)
Q Consensus        93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq--kQRv~IAraL~~~-P~~lllDEPt  169 (178)
                      .    .+... +.-.....+.   .    .+++++.+        .+.+.|+++  +|++..+++++.+ |+++++||||
T Consensus        56 ~----~~~~~-~~~~~~~~~~---~----~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~  115 (220)
T 2cvh_A           56 G----FSPER-LVQMAETRGL---N----PEEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSIT  115 (220)
T ss_dssp             C----CCHHH-HHHHHHTTTC---C----HHHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCC
T ss_pred             C----CCHHH-HHHHHHhcCC---C----hHHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcH
Confidence            1    12211 1111111111   1    11223322        233455554  5678888899986 9999999999


Q ss_pred             CCCCCC
Q psy860          170 SSQNLY  175 (178)
Q Consensus       170 ~gLD~~  175 (178)
                      +.+|+.
T Consensus       116 ~~l~~~  121 (220)
T 2cvh_A          116 AHYRAE  121 (220)
T ss_dssp             CCTTGG
T ss_pred             HHhhhc
Confidence            999974

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.88  E-value=2.3e-11  Score=99.19  Aligned_cols=126  Identities=11%  Similarity=-0.059  Sum_probs=87.6

Q ss_pred             ccccchhhhc-------------------cHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--cccccccc--
Q psy860           14 PQFNGINEHL-------------------TAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--FQAAQNSL--   70 (178)
Q Consensus        14 ~~~~~v~~~~-------------------~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~~~g~i~~--   70 (178)
                      +++++||+++                   ..|+    +.+|.|+||||||       |+++.+.++.+  |++|.+.+  
T Consensus        49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~----iigI~G~~GsGKS-------Tl~~~L~~~l~~~~~~G~i~vi~  117 (308)
T 1sq5_A           49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPY----IISIAGSVAVGKS-------TTARVLQALLSRWPEHRRVELIT  117 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCE----EEEEEECTTSSHH-------HHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCE----EEEEECCCCCCHH-------HHHHHHHHHHhhCCCCCeEEEEe
Confidence            6899999998                   7777    7889999999999       99999999877  89999988  


Q ss_pred             -cccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHH
Q psy860           71 -LMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK  149 (178)
Q Consensus        71 -~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR  149 (178)
                       ++.....  ..++.++++ |...+++.+++.+++.+......-.  .            .+    ..+....+.  .+|
T Consensus       118 ~d~~~~~~--~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~--~------------~i----~~P~~~~~~--~~~  174 (308)
T 1sq5_A          118 TDGFLHPN--QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGV--P------------NV----TAPVYSHLI--YDV  174 (308)
T ss_dssp             GGGGBCCH--HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTC--S------------CE----EECCEETTT--TEE
T ss_pred             cCCccCcH--HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCC--C------------ce----ecccccccc--cCc
Confidence             7765432  234568888 8878888899999998765553211  0            01    011111111  123


Q ss_pred             HHHHHHHhCCCCeEEeeCCCCCCC
Q psy860          150 LSTAMALIGDRDDGFQKLPFSSQN  173 (178)
Q Consensus       150 v~IAraL~~~P~~lllDEPt~gLD  173 (178)
                      +..+.+.+.+|+++|+|.|....+
T Consensus       175 ~~~~~~~~~~~~ivIlEG~~l~~~  198 (308)
T 1sq5_A          175 IPDGDKTVVQPDILILEGLNVLQS  198 (308)
T ss_dssp             CTTCCEEEC-CCEEEEECTTTTCC
T ss_pred             ccccceecCCCCEEEECchhhCCC
Confidence            322234456899999999998876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.87  E-value=3.3e-14  Score=114.40  Aligned_cols=129  Identities=13%  Similarity=0.026  Sum_probs=86.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      ..+++++++.++.|      ..|+||||+|||       |+++.+.+...+  +.+.++|.++..  ..+..+.++++||
T Consensus        33 ~~~l~~~~l~~~~G------vlL~Gp~GtGKT-------tLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~   97 (274)
T 2x8a_A           33 PDQFKALGLVTPAG------VLLAGPPGCGKT-------LLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQ   97 (274)
T ss_dssp             HHHHHHTTCCCCSE------EEEESSTTSCHH-------HHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCe------EEEECCCCCcHH-------HHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHH
Confidence            45789999999988      459999999999       999999988765  567777776533  2233445777777


Q ss_pred             CC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           91 FN-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        91 ~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      .. ...+.+++.|++......+.      ....    +  ......++.+.+|||||+||+.|++|+..+|++|  |||+
T Consensus        98 ~a~~~~p~i~~~Deid~~~~~r~------~~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al  163 (274)
T 2x8a_A           98 RAKNSAPCVIFFDEVDALCPRRS------DRET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAI  163 (274)
T ss_dssp             HHHHTCSEEEEEETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred             HHHhcCCCeEeeehhhhhhcccC------CCcc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence            63 33444555555433110000      0000    0  1234456677889999999999999999999985  8875


Q ss_pred             C
Q psy860          170 S  170 (178)
Q Consensus       170 ~  170 (178)
                      .
T Consensus       164 ~  164 (274)
T 2x8a_A          164 L  164 (274)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.84  E-value=5.7e-12  Score=98.27  Aligned_cols=69  Identities=10%  Similarity=0.113  Sum_probs=48.9

Q ss_pred             hhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc--ccccccccccccccHHhhccceEEecCCCCCCC
Q psy860           19 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF--QAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINE   96 (178)
Q Consensus        19 v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~--~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~   96 (178)
                      -.-+.+.|+    +.+|+||||||||       ||++.+.+..+|  ..|.+.+.+++...  ..+++++|+||++..|+
T Consensus         9 ~~~~~~~G~----ii~l~GpsGsGKS-------TLlk~L~g~~~p~~~~g~v~~ttr~~~~--~e~~gi~y~fq~~~~f~   75 (219)
T 1s96_A            9 HHHHMAQGT----LYIVSAPSGAGKS-------SLIQALLKTQPLYDTQVSVSHTTRQPRP--GEVHGEHYFFVNHDEFK   75 (219)
T ss_dssp             ------CCC----EEEEECCTTSCHH-------HHHHHHHHHSCTTTEEECCCEECSCCCT--TCCBTTTBEECCHHHHH
T ss_pred             ccccCCCCc----EEEEECCCCCCHH-------HHHHHHhccCCCCceEEEEEecCCCCCc--ccccCceEEECCHHHHH
Confidence            345678888    8889999999999       999999999885  68888887765432  23567999999865544


Q ss_pred             CCCH
Q psy860           97 HLTA  100 (178)
Q Consensus        97 ~ltv  100 (178)
                      .+++
T Consensus        76 ~~~~   79 (219)
T 1s96_A           76 EMIS   79 (219)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4443

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.77  E-value=5.5e-11  Score=103.32  Aligned_cols=51  Identities=14%  Similarity=0.021  Sum_probs=46.2

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN   74 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~   74 (178)
                      ..+++++++.++.|+    ..+|.|+||||||       |+++.++++.+|+.|.+++++..
T Consensus       247 ~~~l~~l~~~v~~g~----~i~I~GptGSGKT-------TlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          247 SGVLAYLWLAIEHKF----SAIVVGETASGKT-------TTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHHHHHHTTC----CEEEEESTTSSHH-------HHHHHHGGGSCTTCCEEEEESSC
T ss_pred             HHHHHHHHHHHhCCC----EEEEECCCCCCHH-------HHHHHHHhhCCCCCCEEEEcCcc
Confidence            457899999999999    6779999999999       99999999999999999988764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.73  E-value=4.4e-11  Score=101.49  Aligned_cols=126  Identities=15%  Similarity=0.076  Sum_probs=78.3

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC---
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF---   91 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~---   91 (178)
                      .-++|+|+++.++    ..+|+|+||+|||       ||++.+.+..+ .     +.+.+..   .+...+++++++   
T Consensus       146 ~~~~i~lelk~g~----~VgLVG~~gAGKS-------TLL~~Lsg~~~-~-----i~~~~ft---Tl~p~~G~V~~~~~~  205 (416)
T 1udx_A          146 EKRRLRLELMLIA----DVGLVGYPNAGKS-------SLLAAMTRAHP-K-----IAPYPFT---TLSPNLGVVEVSEEE  205 (416)
T ss_dssp             CEEEEEEEECCSC----SEEEECCGGGCHH-------HHHHHHCSSCC-E-----ECCCTTC---SSCCEEEEEECSSSC
T ss_pred             eEeeeeeEEcCCC----EEEEECCCCCcHH-------HHHHHHHcCCc-c-----ccCcccc---eecceeeEEEecCcc
Confidence            4579999999999    7889999999999       99999988743 1     1111111   112234555443   


Q ss_pred             -------CCCCCCCCHHHHHHHHHHhcCCCCC--ChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           92 -------NGINEHLTAQEMLECFSALRGIPGV--KSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        92 -------~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                             +.+.....  ++       .++...  +..++++.++..+++.   ++++.+||+|++|++.+|++|+..|.+
T Consensus       206 ~~~l~DtpGli~~a~--~~-------~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~I  273 (416)
T 1udx_A          206 RFTLADIPGIIEGAS--EG-------KGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSL  273 (416)
T ss_dssp             EEEEEECCCCCCCGG--GS-------CCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred             eEEEEeccccccchh--hh-------hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEE
Confidence                   22222100  00       000000  0000112223334443   567788999999999999999999999


Q ss_pred             EEeeCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYN  176 (178)
Q Consensus       163 lllDEPt~gLD~~~  176 (178)
                      +++    |.+|+..
T Consensus       274 LVl----NKlDl~~  283 (416)
T 1udx_A          274 VAL----NKVDLLE  283 (416)
T ss_dssp             EEE----ECCTTSC
T ss_pred             EEE----ECCChhh
Confidence            999    9999864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.72  E-value=4.1e-09  Score=86.00  Aligned_cols=99  Identities=14%  Similarity=0.127  Sum_probs=71.0

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCC
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEH   97 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~   97 (178)
                      .+++....++    +.+++|+||+|||       |++..+.+...++.+.+.+.+.+....                   
T Consensus        96 ~~~~~~~~~~----vi~ivG~~GsGKT-------Tl~~~LA~~l~~~g~kV~lv~~D~~r~-------------------  145 (306)
T 1vma_A           96 KLNVPPEPPF----VIMVVGVNGTGKT-------TSCGKLAKMFVDEGKSVVLAAADTFRA-------------------  145 (306)
T ss_dssp             CCCCCSSSCE----EEEEECCTTSSHH-------HHHHHHHHHHHHTTCCEEEEEECTTCH-------------------
T ss_pred             CCcccCCCCe----EEEEEcCCCChHH-------HHHHHHHHHHHhcCCEEEEEccccccH-------------------
Confidence            3556667777    7789999999999       898999888877777765544332110                   


Q ss_pred             CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHH---HHHHHHhCCCCeEEeeCCCC
Q psy860           98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKL---STAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus        98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv---~IAraL~~~P~~lllDEPt~  170 (178)
                       ...                  +....+.+.+++..     +...|+|+.|++   ++++|+..+|+++|+|||..
T Consensus       146 -~a~------------------eqL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          146 -AAI------------------EQLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             -HHH------------------HHHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             -HHH------------------HHHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence             001                  12334455666643     345789999999   99999999999999999974

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.68  E-value=8.3e-09  Score=84.45  Aligned_cols=110  Identities=8%  Similarity=-0.089  Sum_probs=51.9

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhc-cCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhc
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIR-FSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALR  111 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~-~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~  111 (178)
                      ..+.|++|+|||       |+++.+.+ +..|+.|.+.+++.+.......+..+++++|.+.+..+.+-          .
T Consensus        39 ~ll~Gp~G~GKT-------tl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~  101 (354)
T 1sxj_E           39 LLLYGPNGTGKK-------TRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------M  101 (354)
T ss_dssp             EEEECSTTSSHH-------HHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC------------
T ss_pred             EEEECCCCCCHH-------HHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh----------c
Confidence            458899999999       99999998 78889999999887765443335678888887543211110          0


Q ss_pred             CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860          112 GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLY  175 (178)
Q Consensus       112 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~  175 (178)
                      +.   .....+.+.++.+.-....+... +|||           +..+|+++|+|||++ ||+.
T Consensus       102 ~~---~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~  149 (354)
T 1sxj_E          102 GN---NDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKD  149 (354)
T ss_dssp             -----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHH
T ss_pred             CC---cchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHH
Confidence            00   01112333333332111111111 5676           788999999999999 9875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.56  E-value=8.3e-12  Score=99.86  Aligned_cols=129  Identities=11%  Similarity=0.027  Sum_probs=80.8

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~Q~   91 (178)
                      .+++++++.++.|      ..|+|++|+|||       |+++.+.+...  .+.+.+++.++...  ...++.++++||.
T Consensus        63 ~~l~~~~~~~~~g------vll~Gp~GtGKT-------tl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~  127 (278)
T 1iy2_A           63 SRFHEMGARIPKG------VLLVGPPGVGKT-------HLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET  127 (278)
T ss_dssp             HHHHHTTCCCCCE------EEEECCTTSSHH-------HHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe------EEEECCCcChHH-------HHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence            5678888888877      459999999999       88898888764  66777777654321  1223356777776


Q ss_pred             CC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           92 NG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        92 ~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      .. ..+.+++.|++...............+...+.+         ++...+|||||+||+.+++|+..+|++  +|++
T Consensus       128 ~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~---------~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~  194 (278)
T 1iy2_A          128 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLLVEMDGFEKDTAIVVMAATNRPDI--LDPA  194 (278)
T ss_dssp             HHTSCSEEEEEETHHHHHCC--------CHHHHHHH---------HHHHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred             HHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH---------HHHHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence            42 455667777775433211100000011111111         122345899999999999999999987  5655

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.48  E-value=1.5e-11  Score=96.82  Aligned_cols=130  Identities=11%  Similarity=0.032  Sum_probs=80.2

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~Q~   91 (178)
                      .+++++++.++.|      ..|+|++|+|||       |+++.+.+...  .+.+.+++.++...  ...++.+++++|.
T Consensus        39 ~~~~~~~~~~~~g------~ll~G~~G~GKT-------tl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~  103 (254)
T 1ixz_A           39 SRFHEMGARIPKG------VLLVGPPGVGKT-------HLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET  103 (254)
T ss_dssp             HHHHHTTCCCCSE------EEEECCTTSSHH-------HHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe------EEEECCCCCCHH-------HHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence            5678888888877      459999999999       88898888764  56777777654321  1223356777776


Q ss_pred             C-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           92 N-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        92 ~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      . ...+.+++.|++...............+...+.+         ++....|||||+||+.+++|+..+|++  +|++.
T Consensus       104 ~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l  171 (254)
T 1ixz_A          104 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLLVEMDGFEKDTAIVVMAATNRPDI--LDPAL  171 (254)
T ss_dssp             HTTSSSEEEEEETHHHHHC---------CHHHHHHH---------HHHHHHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred             HHhcCCeEEEehhhhhhhcccCccccccchHHHHHH---------HHHHHHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence            4 2455666667664433221110000011111111         122345889999999999999999987  57654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.48  E-value=1.7e-08  Score=78.12  Aligned_cols=50  Identities=4%  Similarity=0.013  Sum_probs=34.8

Q ss_pred             ccccchh-hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc--cCCc-----ccccccccccc
Q psy860           14 PQFNGIN-EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR--FSPF-----QAAQNSLLMTN   74 (178)
Q Consensus        14 ~~~~~v~-~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~--~~~~-----~~g~i~~~g~~   74 (178)
                      +.|+.+= -.++.|+    +..|.|+||+|||       |++..+++  ..++     ..+.++++++.
T Consensus        11 ~~LD~~l~ggi~~G~----~~~i~G~~GsGKT-------tl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           11 KELDKLLQGGIETGS----ITEMFGEFRTGKT-------QICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             HHHHHHTTTSEETTS----EEEEECCTTSSHH-------HHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             hHHHHhhcCCCcCCe----EEEEECCCCCcHH-------HHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            4455543 3688999    7779999999999       88888887  4554     34455555443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.48  E-value=1e-10  Score=89.73  Aligned_cols=113  Identities=14%  Similarity=0.080  Sum_probs=64.9

Q ss_pred             ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---cccccccccccccHHhhccceEEecCCCCCCCCCC
Q psy860           23 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLT   99 (178)
Q Consensus        23 ~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~lt   99 (178)
                      .+.|+    +.+|+|+||||||       ||++.+.++.+|+   .|.+.+++........  ..++..+.         
T Consensus        19 ~~~g~----~v~I~G~sGsGKS-------Tl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~--~~~~~~~~---------   76 (208)
T 3c8u_A           19 QPGRQ----LVALSGAPGSGKS-------TLSNPLAAALSAQGLPAEVVPMDGFHLDNRLL--EPRGLLPR---------   76 (208)
T ss_dssp             CCSCE----EEEEECCTTSCTH-------HHHHHHHHHHHHTTCCEEEEESGGGBCCHHHH--GGGTCGGG---------
T ss_pred             CCCCe----EEEEECCCCCCHH-------HHHHHHHHHHhhcCCceEEEecCCCcCCHHHH--HHhccccc---------
Confidence            46788    7889999999999       9999999887753   4555555443322110  00110000         


Q ss_pred             HHHHHHHHHHhcCCCCCChhHHHHHHHHHcC----CC-ccccCcCCCCChHHHHHHHHH-HHHhCCCCeEEeeCCC
Q psy860          100 AQEMLECFSALRGIPGVKSGPIIDYWIDLLG----LT-EYRHRVSGRYSGGNKRKLSTA-MALIGDRDDGFQKLPF  169 (178)
Q Consensus       100 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~----L~-~~~~~~~~~LSgGqkQRv~IA-raL~~~P~~lllDEPt  169 (178)
                                 .+.+..-......+.+..+.    +. +..++ ...+|+||+|++++| ++++.++.++++|||.
T Consensus        77 -----------~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~  140 (208)
T 3c8u_A           77 -----------KGAPETFDFEGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG  140 (208)
T ss_dssp             -----------TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred             -----------CCCCchhhHHHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence                       00100001111222222221    11 11222 235799999999998 8999999999999984

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.48  E-value=1.1e-07  Score=76.95  Aligned_cols=105  Identities=11%  Similarity=-0.024  Sum_probs=69.3

Q ss_pred             cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCC
Q psy860           17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINE   96 (178)
Q Consensus        17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~   96 (178)
                      ++++|+  .|+    ..++.|+||+|||       |+...+.+...++.+.+.+.+.+......                
T Consensus        91 ~~i~~~--~~~----~i~i~g~~G~GKT-------T~~~~la~~~~~~~~~v~l~~~d~~~~~~----------------  141 (295)
T 1ls1_A           91 RLPVLK--DRN----LWFLVGLQGSGKT-------TTAAKLALYYKGKGRRPLLVAADTQRPAA----------------  141 (295)
T ss_dssp             CCCCCC--SSE----EEEEECCTTTTHH-------HHHHHHHHHHHHTTCCEEEEECCSSCHHH----------------
T ss_pred             ceeecC--CCe----EEEEECCCCCCHH-------HHHHHHHHHHHHcCCeEEEecCCcccHhH----------------
Confidence            678887  677    6779999999999       89899988887777777665544322110                


Q ss_pred             CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC-CCCCCC
Q psy860           97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP-FSSQNL  174 (178)
Q Consensus        97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP-t~gLD~  174 (178)
                         . +.+                  ..+.+..++.-.....  .-+-.+.+|.+|+.+...+++++|+||| ++++|.
T Consensus       142 ---~-~ql------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~  196 (295)
T 1ls1_A          142 ---R-EQL------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDE  196 (295)
T ss_dssp             ---H-HHH------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCH
T ss_pred             ---H-HHH------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccH
Confidence               0 000                  0112334554221100  1122345788999998899999999999 999985

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.41  E-value=2.4e-08  Score=86.04  Aligned_cols=52  Identities=10%  Similarity=-0.032  Sum_probs=48.7

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM   76 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~   76 (178)
                      .++|++|||+|++ |    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++.
T Consensus        17 ~~~l~~vsl~i~~-e----~~~liG~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           17 WNGFFARTFDFDE-L----VTTLSGGNGAGKS-------TTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             ETTEEEEEEECCS-S----EEEEECCTTSSHH-------HHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             cccccceEEEEcc-c----eEEEECCCCCcHH-------HHHHHHhcCCCCCCCEEEECCEEcc
Confidence            4689999999999 8    8889999999999       9999999999999999999998875

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.39  E-value=1.8e-11  Score=92.29  Aligned_cols=121  Identities=8%  Similarity=-0.022  Sum_probs=70.5

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALR  111 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~  111 (178)
                      +.+|+|+||||||       |+++.+.+   +..|.+++++.++...    ..+++++|.....+..++++++.+.....
T Consensus         4 ii~l~G~~GaGKS-------Tl~~~L~~---~~~g~~~i~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   69 (189)
T 2bdt_A            4 LYIITGPAGVGKS-------TTCKRLAA---QLDNSAYIEGDIINHM----VVGGYRPPWESDELLALTWKNITDLTVNF   69 (189)
T ss_dssp             EEEEECSTTSSHH-------HHHHHHHH---HSSSEEEEEHHHHHTT----CCTTCCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHH-------HHHHHHhc---ccCCeEEEcccchhhh----hccccccCccchhHHHHHHHHHHHHHHHH
Confidence            4578999999999       88888876   5567788887654221    23567777654444567777776643221


Q ss_pred             CCCCCChhHHHHHHHHHcCCCccccCcCCCC--ChHHHHHHHHHH------HHhCCCCeEEeeCCCCCCCCCC
Q psy860          112 GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRY--SGGNKRKLSTAM------ALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       112 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L--SgGqkQRv~IAr------aL~~~P~~lllDEPt~gLD~~~  176 (178)
                      ......      .+++.+. .....+...++  |+||+|++.++.      +++.+|+...+|+   ++|+..
T Consensus        70 ~~~~~~------~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~  132 (189)
T 2bdt_A           70 LLAQND------VVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC  132 (189)
T ss_dssp             HHTTCE------EEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred             HhcCCc------EEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence            100000      0001010 01001112233  888888888888      8999999888884   788754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.34  E-value=1.2e-09  Score=82.71  Aligned_cols=125  Identities=6%  Similarity=-0.031  Sum_probs=68.4

Q ss_pred             hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEecCCCCCCCC
Q psy860           20 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCPQFNGINEH   97 (178)
Q Consensus        20 ~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~Q~~~l~~~   97 (178)
                      |+++..|+    +.+|+|+||||||       |+++.+.++.+    .+.+.+......  ...+.+++|+||++..++.
T Consensus         1 s~~m~~g~----ii~l~Gp~GsGKS-------Tl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (205)
T 3tr0_A            1 SNAMNKAN----LFIISAPSGAGKT-------SLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQA   65 (205)
T ss_dssp             ----CCCC----EEEEECCTTSCHH-------HHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHH
T ss_pred             CCcCCCCc----EEEEECcCCCCHH-------HHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHH
Confidence            56677788    7889999999999       99999988864    344555444322  1235679999998766655


Q ss_pred             CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      +++.+++.......+.......+.+.++++. +..-..+        +..|-+.-++....+|.+++++.|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-g~~vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~  127 (205)
T 3tr0_A           66 MVKEGAFLEHATIYERHYGTEKDWVLRQLKA-GRDVLLE--------IDWQGARQIRELFPPALSIFILPP  127 (205)
T ss_dssp             HHHHTCEEEEEEETTEEEEEEHHHHHHHHHT-TCEEEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred             HHhcCcEEeeeeeecccccchHHHHHHHHHc-CCeEEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence            5554433221111111111123345555543 1111111        233444445556667777877766

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.28  E-value=1.3e-07  Score=70.27  Aligned_cols=37  Identities=16%  Similarity=0.076  Sum_probs=28.3

Q ss_pred             hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccc
Q psy860           20 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQ   67 (178)
Q Consensus        20 ~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~   67 (178)
                      +|.+..|+    ...|.|+||+|||       |+++.+.+...++.|.
T Consensus        32 ~~~~~~g~----~~~l~G~~G~GKT-------tL~~~i~~~~~~~~g~   68 (180)
T 3ec2_A           32 NFNPEEGK----GLTFVGSPGVGKT-------HLAVATLKAIYEKKGI   68 (180)
T ss_dssp             SCCGGGCC----EEEECCSSSSSHH-------HHHHHHHHHHHHHSCC
T ss_pred             hccccCCC----EEEEECCCCCCHH-------HHHHHHHHHHHHHcCC
Confidence            34556677    6679999999999       9999888876655543

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.26  E-value=2.9e-09  Score=94.07  Aligned_cols=149  Identities=14%  Similarity=0.018  Sum_probs=89.9

Q ss_pred             hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc-ccccccccccccHHhhccce
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA-AQNSLLMTNIMHLFQYLSGI   85 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~-g~i~~~g~~~~~~~~~~~~i   85 (178)
                      ++-+|-..+++++++.+..|+    ...|.|++|+|||       |+++.+.+..++.. +.+.+.+.....   ....+
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g~----~vll~Gp~GtGKT-------tlar~ia~~l~~~~~~~~~~~~~~~~~---~~p~i  106 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQKR----HVLLIGEPGTGKS-------MLGQAMAELLPTETLEDILVFPNPEDE---NMPRI  106 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTTC----CEEEECCTTSSHH-------HHHHHHHHTSCCSSCEEEEEECCTTCT---TSCEE
T ss_pred             ceEECchhhHhhccccccCCC----EEEEEeCCCCCHH-------HHHHHHhccCCcccCCeEEEeCCcccc---cCCcE
Confidence            455677789999999999998    7779999999999       99999999988776 555555544322   23357


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHhc----------------------C--C-CCCChhHHHHHHHHHcCCCccccCcCC
Q psy860           86 GYCPQFNGINEHLTAQEMLECFSALR----------------------G--I-PGVKSGPIIDYWIDLLGLTEYRHRVSG  140 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~~~~~----------------------~--~-~~~~~~~~~~~~l~~~~L~~~~~~~~~  140 (178)
                      +++|+...-    .+.+.........                      .  . ......+......+.+|-.+......+
T Consensus       107 ~~~p~g~~~----~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g  182 (604)
T 3k1j_A          107 KTVPACQGR----RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSG  182 (604)
T ss_dssp             EEEETTHHH----HHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---
T ss_pred             EEEecchHH----HHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcC
Confidence            777764310    0111111000000                      0  0 000000001112233443333333446


Q ss_pred             CCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860          141 RYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL  174 (178)
Q Consensus       141 ~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~  174 (178)
                      .+|+|++|++..++....++.+|++||... |++
T Consensus       183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~  215 (604)
T 3k1j_A          183 GLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSL  215 (604)
T ss_dssp             -CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCH
T ss_pred             CccccccccccCceeeecCCCEEEEechhh-CCH
Confidence            799999999999999999999999999865 443

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.17  E-value=2.8e-07  Score=72.09  Aligned_cols=60  Identities=12%  Similarity=-0.015  Sum_probs=41.0

Q ss_pred             hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH----------HhhccceEEec
Q psy860           20 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL----------FQYLSGIGYCP   89 (178)
Q Consensus        20 ~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~----------~~~~~~ig~v~   89 (178)
                      +++++. +    +.+|+||||||||       ||+..+.++..|++|.|.++|.++...          ...+.+++|++
T Consensus        22 ~~~~~~-~----~~~i~GpnGsGKS-------Tll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~   89 (227)
T 1qhl_A           22 TFDLDE-L----VTTLSGGNGAGKS-------TTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSM   89 (227)
T ss_dssp             EECHHH-H----HHHHHSCCSHHHH-------HHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEE
T ss_pred             EEEEcC-c----EEEEECCCCCCHH-------HHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEE
Confidence            455555 5    6779999999999       999999999999999999999877321          12356799999


Q ss_pred             CC
Q psy860           90 QF   91 (178)
Q Consensus        90 Q~   91 (178)
                      |+
T Consensus        90 ~~   91 (227)
T 1qhl_A           90 LD   91 (227)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.05  E-value=6.4e-07  Score=65.33  Aligned_cols=28  Identities=18%  Similarity=0.149  Sum_probs=23.1

Q ss_pred             HHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860           25 AQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF   63 (178)
Q Consensus        25 ~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~   63 (178)
                      .|+    ...|.|++|+|||       ||++.+.+...+
T Consensus        35 ~g~----~~~l~G~~G~GKT-------tL~~~i~~~~~~   62 (149)
T 2kjq_A           35 HGQ----FIYVWGEEGAGKS-------HLLQAWVAQALE   62 (149)
T ss_dssp             CCS----EEEEESSSTTTTC-------HHHHHHHHHHHT
T ss_pred             CCC----EEEEECCCCCCHH-------HHHHHHHHHHHh
Confidence            566    6779999999999       899988877554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.03  E-value=7.7e-06  Score=66.16  Aligned_cols=91  Identities=15%  Similarity=0.206  Sum_probs=59.5

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALR  111 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~  111 (178)
                      ..+++|+||+|||       |++..+.+...++.|.                ++.++.+++.   ..++.+.+..+....
T Consensus       107 vi~lvG~~GsGKT-------Tl~~~LA~~l~~~~G~----------------~V~lv~~D~~---r~~a~eqL~~~~~~~  160 (296)
T 2px0_A          107 YIVLFGSTGAGKT-------TTLAKLAAISMLEKHK----------------KIAFITTDTY---RIAAVEQLKTYAELL  160 (296)
T ss_dssp             EEEEEESTTSSHH-------HHHHHHHHHHHHTTCC----------------CEEEEECCCS---STTHHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHHHHhcCC----------------EEEEEecCcc---cchHHHHHHHHHHhc
Confidence            6779999999999       8888888877665553                4777777752   345566655433222


Q ss_pred             CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          112 GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       112 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                                        ++.....     .+ ...-+.++++  +.+|+++|+|  |+|+|+..
T Consensus       161 ------------------gl~~~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~  197 (296)
T 2px0_A          161 ------------------QAPLEVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKD  197 (296)
T ss_dssp             ------------------TCCCCBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTS
T ss_pred             ------------------CCCeEec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhh
Confidence                              2211110     12 2333556664  4999999999  99999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.92  E-value=8e-08  Score=72.18  Aligned_cols=27  Identities=19%  Similarity=0.090  Sum_probs=24.0

Q ss_pred             HHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          149 KLSTAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       149 Rv~IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      .+.+|++++.+|+++++|  ||++|+.+.
T Consensus       153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v  179 (191)
T 1oix_A          153 PTDEARAFAEKNGLSFIE--TSALDSTNV  179 (191)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred             CHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence            467899999999999999  999998763

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.91  E-value=3e-08  Score=83.04  Aligned_cols=136  Identities=6%  Similarity=-0.046  Sum_probs=80.9

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN   92 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~   92 (178)
                      .++++++|+.++.|+    +.+|.|++|+|||       |+++.+.+..   .|.+...  +... ......++++||..
T Consensus       156 ~~~l~~~~~~i~~~~----~i~l~G~~GsGKS-------Tl~~~l~~~~---~g~~~~~--~~~~-~~~~~~lg~~~q~~  218 (377)
T 1svm_A          156 YDFLKCMVYNIPKKR----YWLFKGPIDSGKT-------TLAAALLELC---GGKALNV--NLPL-DRLNFELGVAIDQF  218 (377)
T ss_dssp             HHHHHHHHHCCTTCC----EEEEECSTTSSHH-------HHHHHHHHHH---CCEEECC--SSCT-TTHHHHHGGGTTCS
T ss_pred             HHHHHhcccccCCCC----EEEEECCCCCCHH-------HHHHHHHhhc---CCcEEEE--eccc-hhHHHHHHHhcchh
Confidence            468999999999999    7889999999999       8888888754   3444321  1110 01111367777765


Q ss_pred             C-CCCCCCHHHHHHHHHHhcCCCCCCh---hHHHHHHHH---H------------cCCC-ccccCcCCCCChHHHHHHHH
Q psy860           93 G-INEHLTAQEMLECFSALRGIPGVKS---GPIIDYWID---L------------LGLT-EYRHRVSGRYSGGNKRKLST  152 (178)
Q Consensus        93 ~-l~~~ltv~e~l~~~~~~~~~~~~~~---~~~~~~~l~---~------------~~L~-~~~~~~~~~LSgGqkQRv~I  152 (178)
                      . ++++.+....+     .+.......   ...+...++   .            .-+. ...+.....+++|++||+..
T Consensus       219 ~~l~dd~~~~~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~  293 (377)
T 1svm_A          219 LVVFEDVKGTGGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVK  293 (377)
T ss_dssp             CEEETTCCCSTTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEE
T ss_pred             HHHHHHHHHHHHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhh
Confidence            3 23333221110     000000000   011122222   0            0011 23455677899999999999


Q ss_pred             HHHHhCCCCeEE-eeCCCC
Q psy860          153 AMALIGDRDDGF-QKLPFS  170 (178)
Q Consensus       153 AraL~~~P~~ll-lDEPt~  170 (178)
                      +.+++..|++++ ||+|+.
T Consensus       294 ~~~l~~~pDLliyLd~~~~  312 (377)
T 1svm_A          294 QIDFRPKDYLKHCLERSEF  312 (377)
T ss_dssp             EEECCCCHHHHHHHHTCTH
T ss_pred             hhccCCCCCeEEEEeCCHH
Confidence            888899999998 999985

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.77  E-value=1.1e-05  Score=67.93  Aligned_cols=49  Identities=8%  Similarity=0.004  Sum_probs=32.9

Q ss_pred             ccccchh-hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhh--hccCCcccc-----ccccccc
Q psy860           14 PQFNGIN-EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSA--IRFSPFQAA-----QNSLLMT   73 (178)
Q Consensus        14 ~~~~~v~-~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~--~~~~~~~~g-----~i~~~g~   73 (178)
                      +.|+.+= =-|+.|+    +..|.|++|+|||       ||+..+  .+..+++.|     .++++++
T Consensus       165 ~~LD~lLgGGI~~Ge----i~~I~G~sGsGKT-------TLl~~la~~~~~p~~~Gg~~~~viyid~E  221 (400)
T 3lda_A          165 KNLDTLLGGGVETGS----ITELFGEFRTGKS-------QLCHTLAVTCQIPLDIGGGEGKCLYIDTE  221 (400)
T ss_dssp             HHHHHHTTTSEETTS----EEEEEESTTSSHH-------HHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred             hhHHHHhcCCcCCCc----EEEEEcCCCCChH-------HHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence            3444432 3678899    7779999999999       888843  455665544     4455544

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.72  E-value=2.3e-08  Score=86.79  Aligned_cols=133  Identities=10%  Similarity=-0.024  Sum_probs=73.3

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc--cCCccccccccccccccc--HHhhccceEEecCCCC
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR--FSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQFNG   93 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~--~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~~~   93 (178)
                      -|++++.++.    -..|.|.+|+|||       +++++++.  +...+.+++.+.+.+.+.  +..+. .+      ++
T Consensus       159 pv~ldL~~~p----HlLIaG~TGSGKS-------t~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-~l------Ph  220 (512)
T 2ius_A          159 PVVADLAKMP----HLLVAGTTGSGAS-------VGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-GI------PH  220 (512)
T ss_dssp             EEEEEGGGSC----SEEEECCTTSSHH-------HHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-TC------TT
T ss_pred             EEEEEcccCc----eEEEECCCCCCHH-------HHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-cC------Cc
Confidence            3566777776    5679999999999       77776654  344445666555544432  11111 11      11


Q ss_pred             CCC--CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc---CcCCCCChHHHHHH----------HHHHHHhC
Q psy860           94 INE--HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH---RVSGRYSGGNKRKL----------STAMALIG  158 (178)
Q Consensus        94 l~~--~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~---~~~~~LSgGqkQRv----------~IAraL~~  158 (178)
                      +..  -.+..+........    ..+..++. ++++.+|+.+..+   +....+|+||+|+.          .+|+++..
T Consensus       221 l~~~Vvtd~~~a~~~L~~~----~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~  295 (512)
T 2ius_A          221 LLTEVVTDMKDAANALRWC----VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKK  295 (512)
T ss_dssp             BSSSCBCSHHHHHHHHHHH----HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCC
T ss_pred             ccceeecCHHHHHHHHHHH----HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhcccccccc
Confidence            110  01122211111111    12334443 6778888875433   22346889988753          35667788


Q ss_pred             CCC-eEEeeCCCCCCC
Q psy860          159 DRD-DGFQKLPFSSQN  173 (178)
Q Consensus       159 ~P~-~lllDEPt~gLD  173 (178)
                      .|. ++++||+++-+|
T Consensus       296 lP~ivlvIDE~~~ll~  311 (512)
T 2ius_A          296 EPYIVVLVDEFADLMM  311 (512)
T ss_dssp             CCEEEEEEETHHHHHH
T ss_pred             CCcEEEEEeCHHHHHh
Confidence            898 899999976554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.71  E-value=3.2e-08  Score=83.28  Aligned_cols=121  Identities=11%  Similarity=0.026  Sum_probs=75.0

Q ss_pred             hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc------------cCCcccccccccccccccHHh---hccce-
Q psy860           22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR------------FSPFQAAQNSLLMTNIMHLFQ---YLSGI-   85 (178)
Q Consensus        22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~------------~~~~~~g~i~~~g~~~~~~~~---~~~~i-   85 (178)
                      .+..|+    ..+|+|+||+|||       ||++.+.+            ...|+.|.+.+.+..+..+.+   .++.+ 
T Consensus        16 ~v~~g~----~vgiVG~pnaGKS-------TL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~   84 (392)
T 1ni3_A           16 RPGNNL----KTGIVGMPNVGKS-------TFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVP   84 (392)
T ss_dssp             SSSSCC----EEEEEECSSSSHH-------HHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEEC
T ss_pred             cccCCC----EEEEECCCCCCHH-------HHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccC
Confidence            445565    5679999999999       88887777            346888888777654332222   12223 


Q ss_pred             --EEecCCCCCCCCCCHHHHH--HHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC-
Q psy860           86 --GYCPQFNGINEHLTAQEML--ECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR-  160 (178)
Q Consensus        86 --g~v~Q~~~l~~~ltv~e~l--~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P-  160 (178)
                        .++.+.++++...+..+.+  .+...++...         .++..++..  .+..+..+|++.            +| 
T Consensus        85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~--~d~~i~~v~~~~------------dP~  141 (392)
T 1ni3_A           85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF--DDAEIIHVEGDV------------DPI  141 (392)
T ss_dssp             EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC--CTTCSSCCSSSS------------CHH
T ss_pred             cceEEEeccccccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc--ccceeeeecccc------------Ccc
Confidence              4677888888777765544  3333333211         011112221  144555577653            99 


Q ss_pred             -CeEEeeCCCCCCCCCC
Q psy860          161 -DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       161 -~~lllDEPt~gLD~~~  176 (178)
                       +++++|||++++|+..
T Consensus       142 ~di~ildeel~~~D~~~  158 (392)
T 1ni3_A          142 RDLSIIVDELLIKDAEF  158 (392)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hhhhhchhhhHHHHHHH
Confidence             9999999999998753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.68  E-value=5.7e-07  Score=67.63  Aligned_cols=25  Identities=20%  Similarity=0.133  Sum_probs=22.1

Q ss_pred             HHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          150 LSTAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       150 v~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      ...|++++.+|+++++|  ||++|+.+
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~  154 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTN  154 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCC
Confidence            35689999999999999  99999875

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.66  E-value=4.3e-05  Score=65.05  Aligned_cols=126  Identities=8%  Similarity=-0.004  Sum_probs=73.8

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      +.|+++..-++.|+    +..|.|++|+|||       |++..++....+..|.                .+.|+.-+  
T Consensus       191 ~~LD~~~gGl~~G~----liiI~G~pG~GKT-------tl~l~ia~~~~~~~g~----------------~Vl~~s~E--  241 (454)
T 2r6a_A          191 TELDRMTSGFQRSD----LIIVAARPSVGKT-------AFALNIAQNVATKTNE----------------NVAIFSLE--  241 (454)
T ss_dssp             HHHHHHHSSBCTTC----EEEEECCTTSCHH-------HHHHHHHHHHHHHSSC----------------CEEEEESS--
T ss_pred             HHHHhhcCCCCCCC----EEEEECCCCCCHH-------HHHHHHHHHHHHhCCC----------------cEEEEECC--
Confidence            67899998899999    7889999999999       7776666543332231                12222211  


Q ss_pred             CCCCCCHHHHHHHH-H--------Hh-cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh--CCCC
Q psy860           94 INEHLTAQEMLECF-S--------AL-RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI--GDRD  161 (178)
Q Consensus        94 l~~~ltv~e~l~~~-~--------~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~--~~P~  161 (178)
                          ++..+...-. .        .+ .+.-..+..+++.+.++.++..+..-.....+|.++.+  ..++.++  .+|+
T Consensus       242 ----~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~  315 (454)
T 2r6a_A          242 ----MSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLG  315 (454)
T ss_dssp             ----SCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCC
T ss_pred             ----CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCC
Confidence                1111111100 0        00 11111122334555556555444333335679999887  5566665  7899


Q ss_pred             eEEeeCCCCCCCC
Q psy860          162 DGFQKLPFSSQNL  174 (178)
Q Consensus       162 ~lllDEPt~gLD~  174 (178)
                      ++++|+++...++
T Consensus       316 livID~l~~~~~~  328 (454)
T 2r6a_A          316 MIVIDYLQLIQGS  328 (454)
T ss_dssp             EEEEECGGGSCCS
T ss_pred             EEEEccHHHhccC
Confidence            9999999987754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.51  E-value=1.5e-07  Score=81.58  Aligned_cols=127  Identities=11%  Similarity=0.072  Sum_probs=78.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEecCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCPQF   91 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~Q~   91 (178)
                      .+++++++.++.|      ..|.|++|+|||       +|++.+.+...  .+.+.+++.++...  ....+.+..+||.
T Consensus        54 ~~~~~lg~~ip~G------vLL~GppGtGKT-------tLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~  118 (499)
T 2dhr_A           54 SRFHEMGARIPKG------VLLVGPPGVGKT-------HLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET  118 (499)
T ss_dssp             GGTTTTSCCCCSE------EEEECSSSSSHH-------HHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTT
T ss_pred             hhhhhccCCCCce------EEEECCCCCCHH-------HHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHH
Confidence            5788888888887      458999999999       88888887653  55667777655321  1122346667776


Q ss_pred             CC-CCCCCCHHHHHHHHHHhcC--CC--CCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           92 NG-INEHLTAQEMLECFSALRG--IP--GVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        92 ~~-l~~~ltv~e~l~~~~~~~~--~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      .. ..+...+.|++........  ..  ..+..+.+.+++             ..||||++|+..|++|...+|++  +|
T Consensus       119 a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL-------------~~Ldg~~~~~~viviAatn~p~~--LD  183 (499)
T 2dhr_A          119 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LD  183 (499)
T ss_dssp             SSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH-------------HHGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred             HHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHH-------------HHhcccccCccEEEEEecCChhh--cC
Confidence            43 3444455555432211111  00  001112223333             34789999999999999999987  88


Q ss_pred             CCCC
Q psy860          167 LPFS  170 (178)
Q Consensus       167 EPt~  170 (178)
                      |+..
T Consensus       184 ~aLl  187 (499)
T 2dhr_A          184 PALL  187 (499)
T ss_dssp             TTTS
T ss_pred             cccc
Confidence            8764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.50  E-value=1.1e-06  Score=73.25  Aligned_cols=125  Identities=12%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCC-----------cccccccccccccccHHhhccceEEecCCCCCCCCCCHH
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----------FQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQ  101 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----------~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~  101 (178)
                      .+|+|++|+|||       ||++.+.+...           ++.+.+.++|..+    .+....|++.+.+.    ..+.
T Consensus       182 V~lvG~~naGKS-------TLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v----~l~DT~G~i~~lp~----~lve  246 (364)
T 2qtf_A          182 IGIVGYTNSGKT-------SLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI----MLVDTVGFIRGIPP----QIVD  246 (364)
T ss_dssp             EEEECBTTSSHH-------HHHHHHHCC-----------CCSCEEEEEETTEEE----EEEECCCBCSSCCG----GGHH
T ss_pred             EEEECCCCCCHH-------HHHHHHHCCCccccCCcccccCCEEEEEEECCEEE----EEEeCCCchhcCCH----HHHH
Confidence            679999999999       88888877643           3445555555332    11223444433221    1121


Q ss_pred             HHHHHHHHhc---------CCCCCC--hhH---HHHHHHHHcCCCccc----cCcCCCCChHHHHHHHHH----HHH-hC
Q psy860          102 EMLECFSALR---------GIPGVK--SGP---IIDYWIDLLGLTEYR----HRVSGRYSGGNKRKLSTA----MAL-IG  158 (178)
Q Consensus       102 e~l~~~~~~~---------~~~~~~--~~~---~~~~~l~~~~L~~~~----~~~~~~LSgGqkQRv~IA----raL-~~  158 (178)
                      ..-.......         ......  ..+   .+.++++.+++.+..    ..++..+|++++|++.++    +++ ..
T Consensus       247 ~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~  326 (364)
T 2qtf_A          247 AFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP  326 (364)
T ss_dssp             HHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence            1111111110         111111  111   235667777764332    445677898888988877    665 44


Q ss_pred             CCCeEEeeCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~  176 (178)
                      +|++    +|+|++|..+
T Consensus       327 ~~~~----~~~SA~~g~g  340 (364)
T 2qtf_A          327 IFDV----IPISALKRTN  340 (364)
T ss_dssp             EEEE----EECBTTTTBS
T ss_pred             CCcE----EEEECCCCcC
Confidence            4454    8999999764

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.48  E-value=1.7e-05  Score=64.83  Aligned_cols=81  Identities=6%  Similarity=-0.003  Sum_probs=61.5

Q ss_pred             ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------Hhh-----ccc
Q psy860           16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQY-----LSG   84 (178)
Q Consensus        16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~-----~~~   84 (178)
                      ++++||.+..++    ..++.|+||+|||       |++..+.+...++.+.+.+.+.+....      ..+     +.+
T Consensus        95 ~~~l~~~~~~~~----vI~ivG~~G~GKT-------T~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~  163 (320)
T 1zu4_A           95 KYRIDFKENRLN----IFMLVGVNGTGKT-------TSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNK  163 (320)
T ss_dssp             -CCCCCCTTSCE----EEEEESSTTSSHH-------HHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTT
T ss_pred             ccCccccCCCCe----EEEEECCCCCCHH-------HHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCC
Confidence            368999999998    7779999999999       888888888888888888877766432      233     567


Q ss_pred             eEEe-cCCCCCCCCCCHHHHHHHH
Q psy860           85 IGYC-PQFNGINEHLTAQEMLECF  107 (178)
Q Consensus        85 ig~v-~Q~~~l~~~ltv~e~l~~~  107 (178)
                      +.++ +|.....+..++.+++...
T Consensus       164 l~vip~~~~~~~p~~~~~~~l~~~  187 (320)
T 1zu4_A          164 VDLVKANKLNADPASVVFDAIKKA  187 (320)
T ss_dssp             EEEECCSSTTCCHHHHHHHHHHHH
T ss_pred             ceEEeCCCCCCCHHHHHHHHHHHH
Confidence            9999 7765555555677777654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.45  E-value=1.3e-05  Score=61.91  Aligned_cols=38  Identities=5%  Similarity=-0.050  Sum_probs=21.0

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh-ccC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI-RFS   61 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~-~~~   61 (178)
                      .+..+++||+++.|+    +.+|+|+||||||       |+++.+. ++.
T Consensus        14 ~~~~~~~sl~v~~G~----ii~l~Gp~GsGKS-------Tl~~~L~~~~~   52 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGV----ILVLSSPSGCGKT-------TVANKLLEKQK   52 (231)
T ss_dssp             --------CCEECCC----EEEEECSCC-----------CHHHHHHC---
T ss_pred             hcccCCCCcccCCCC----EEEEECCCCCCHH-------HHHHHHHhcCC
Confidence            456899999999999    7889999999999       7888888 776

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.38  E-value=1.4e-05  Score=62.87  Aligned_cols=58  Identities=10%  Similarity=0.071  Sum_probs=46.7

Q ss_pred             cHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh---ccCCccccccc--------cccccccc---HHhhccceEEec
Q psy860           24 TAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI---RFSPFQAAQNS--------LLMTNIMH---LFQYLSGIGYCP   89 (178)
Q Consensus        24 ~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~---~~~~~~~g~i~--------~~g~~~~~---~~~~~~~ig~v~   89 (178)
                      ..|+    +.+|.|++|||||       |+.+.+.   |+..++.|.+.        .+|.++.+   ..++++.+++++
T Consensus        25 ~~g~----~I~I~G~~GsGKS-------Tl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   93 (252)
T 4e22_A           25 AIAP----VITVDGPSGAGKG-------TLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF   93 (252)
T ss_dssp             TTSC----EEEEECCTTSSHH-------HHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred             CCCc----EEEEECCCCCCHH-------HHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence            5666    7889999999999       8888887   99899999998        77776632   456777899999


Q ss_pred             CCC
Q psy860           90 QFN   92 (178)
Q Consensus        90 Q~~   92 (178)
                      |..
T Consensus        94 ~~~   96 (252)
T 4e22_A           94 VSQ   96 (252)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=2.1e-05  Score=59.31  Aligned_cols=46  Identities=17%  Similarity=-0.050  Sum_probs=18.9

Q ss_pred             ChhhhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh
Q psy860            1 MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI   58 (178)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~   58 (178)
                      ||-+.|+++- ...+++||||++..++    +..|.|++|||||       |+.+.+.
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~----~i~l~G~~GsGKs-------Tl~~~La   46 (199)
T 3vaa_A            1 MHHHHHHSSG-VDLGTENLYFQSNAMV----RIFLTGYMGAGKT-------TLGKAFA   46 (199)
T ss_dssp             ------------------------CCC----EEEEECCTTSCHH-------HHHHHHH
T ss_pred             CCcccCCCCC-CCCCCCceeEecCCCC----EEEEEcCCCCCHH-------HHHHHHH
Confidence            6888897664 4679999999999998    7889999999999       5555554

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.32  E-value=1.8e-05  Score=65.44  Aligned_cols=25  Identities=16%  Similarity=-0.075  Sum_probs=20.5

Q ss_pred             HHHHHHHHHhCC--CCeEEeeCCCCCC
Q psy860          148 RKLSTAMALIGD--RDDGFQKLPFSSQ  172 (178)
Q Consensus       148 QRv~IAraL~~~--P~~lllDEPt~gL  172 (178)
                      |-+.++++++.+  |+++++|||++.+
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALV  152 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence            445678888755  9999999999987

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.23  E-value=5.8e-06  Score=62.49  Aligned_cols=70  Identities=6%  Similarity=-0.139  Sum_probs=48.1

Q ss_pred             hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhh-ccceEEecCCCCCCCCCCH
Q psy860           22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQY-LSGIGYCPQFNGINEHLTA  100 (178)
Q Consensus        22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~-~~~ig~v~Q~~~l~~~ltv  100 (178)
                      ..+.|+    +.+|.|+||||||       |+++.+.+..    |.+.+++.++...... +..+++++|+....+.+++
T Consensus        25 ~~~~g~----~i~l~G~~GsGKS-------Tl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~   89 (200)
T 4eun_A           25 TGEPTR----HVVVMGVSGSGKT-------TIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRS   89 (200)
T ss_dssp             ---CCC----EEEEECCTTSCHH-------HHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             cCCCCc----EEEEECCCCCCHH-------HHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHH
Confidence            344566    7889999999999       8888887654    7778888776543222 2346888887666666677


Q ss_pred             HHHHHH
Q psy860          101 QEMLEC  106 (178)
Q Consensus       101 ~e~l~~  106 (178)
                      .+++..
T Consensus        90 ~~~~~~   95 (200)
T 4eun_A           90 LAEWMD   95 (200)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.20  E-value=3.4e-06  Score=64.98  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=24.2

Q ss_pred             ccccch-hhhccHHHHHHHhhhhhCCCCCCcc
Q psy860           14 PQFNGI-NEHLTAQEMLECFSALRGIPGVKSG   44 (178)
Q Consensus        14 ~~~~~v-~~~~~~g~~~~~~~~i~G~~g~gk~   44 (178)
                      +.|+++ +--++.|+    +..|.|++|+|||
T Consensus        10 ~~LD~~l~gGl~~G~----~~~i~G~~GsGKT   37 (247)
T 2dr3_A           10 PGVDEILHGGIPERN----VVLLSGGPGTGKT   37 (247)
T ss_dssp             TTHHHHTTTSEETTC----EEEEEECTTSSHH
T ss_pred             hhHHHHcCCCCCCCc----EEEEECCCCCCHH
Confidence            678888 77899999    7779999999999

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.13  E-value=1.7e-05  Score=59.84  Aligned_cols=56  Identities=11%  Similarity=-0.070  Sum_probs=44.7

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc--cccccccc
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN--SLLMTNIM   76 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i--~~~g~~~~   76 (178)
                      ..|..++.+.+++..+.|+    +.+|.|++|||||       |+.+.+.+.+. ..|.+  ++++.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~g~----~i~l~G~sGsGKS-------Tl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A            8 HECSVEKVDRQRLLDQKGC----VIWVTGLSGSGKS-------TLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             --CCCCHHHHHHHHTSCCE----EEEEECSTTSSHH-------HHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             cccccCHHHHHHhcCCCCe----EEEEECCCCCCHH-------HHHHHHHHHHH-hcCceEEEecCchhh
Confidence            3455678889999999999    7889999999999       88888888766 66777  78877653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.86  E-value=0.00014  Score=53.68  Aligned_cols=67  Identities=9%  Similarity=0.019  Sum_probs=44.6

Q ss_pred             ccc--cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccc---ccccHH-----hhcc
Q psy860           14 PQF--NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMT---NIMHLF-----QYLS   83 (178)
Q Consensus        14 ~~~--~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~---~~~~~~-----~~~~   83 (178)
                      ..+  +++++.+..|     +.+|+|+||+|||       |++..+..++.++.+.....+.   .+..-.     ..+.
T Consensus        13 ~~~~~~~~~~~~~~g-----~~~i~G~NGsGKS-------tll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   80 (182)
T 3kta_A           13 KSYGNKKVVIPFSKG-----FTAIVGANGSGKS-------NIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA   80 (182)
T ss_dssp             GGGCSSCEEEECCSS-----EEEEEECTTSSHH-------HHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred             EeecCccEEEecCCC-----cEEEECCCCCCHH-------HHHHHHHHHHcCCcccccccccchheeecccccCCCCceE
Confidence            345  7888888877     6779999999999       8888888777666655422221   111100     1234


Q ss_pred             ceEEecCCC
Q psy860           84 GIGYCPQFN   92 (178)
Q Consensus        84 ~ig~v~Q~~   92 (178)
                      .|.+++|++
T Consensus        81 ~v~~~f~~~   89 (182)
T 3kta_A           81 EVAIYFNNE   89 (182)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEeCC
Confidence            688889875

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.85  E-value=9.7e-05  Score=60.85  Aligned_cols=107  Identities=10%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      +.|+.+.--+..|+    +..|.|++|+|||       |+...+..-.... |                ..+.|+.=   
T Consensus        34 ~~LD~~~gGl~~G~----LiiIaG~pG~GKT-------t~al~ia~~~a~~-g----------------~~Vl~fSl---   82 (338)
T 4a1f_A           34 VQLDNYTSGFNKGS----LVIIGARPSMGKT-------SLMMNMVLSALND-D----------------RGVAVFSL---   82 (338)
T ss_dssp             HHHHHHHCSBCTTC----EEEEEECTTSCHH-------HHHHHHHHHHHHT-T----------------CEEEEEES---
T ss_pred             hHHHHHhcCCCCCc----EEEEEeCCCCCHH-------HHHHHHHHHHHHc-C----------------CeEEEEeC---
Confidence            56777776789999    7779999999999       6655544211101 1                12444321   


Q ss_pred             CCCCCCHHHHHHHH-HHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860           94 INEHLTAQEMLECF-SALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ  172 (178)
Q Consensus        94 l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL  172 (178)
                         .++..+...-. ....+                +++....+   +.||.++.+|+..|...+.++++.+.|+|...+
T Consensus        83 ---Ems~~ql~~Rlls~~~~----------------v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si  140 (338)
T 4a1f_A           83 ---EMSAEQLALRALSDLTS----------------INMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI  140 (338)
T ss_dssp             ---SSCHHHHHHHHHHHHHC----------------CCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH
T ss_pred             ---CCCHHHHHHHHHHHhhC----------------CCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH
Confidence               23444332211 11111                11112222   479999999999999999999999999997654


Q ss_pred             C
Q psy860          173 N  173 (178)
Q Consensus       173 D  173 (178)
                      |
T Consensus       141 ~  141 (338)
T 4a1f_A          141 E  141 (338)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.85  E-value=0.00015  Score=54.34  Aligned_cols=34  Identities=15%  Similarity=0.079  Sum_probs=26.7

Q ss_pred             hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc
Q psy860           22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA   66 (178)
Q Consensus        22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g   66 (178)
                      +|..|+    +.+|.|+||||||       |+++.+.+...|+.+
T Consensus         2 ~i~~g~----~i~l~G~~GsGKS-------Tl~~~L~~~~~~~~~   35 (207)
T 2j41_A            2 DNEKGL----LIVLSGPSGVGKG-------TVRKRIFEDPSTSYK   35 (207)
T ss_dssp             --CCCC----EEEEECSTTSCHH-------HHHHHHHHCTTCCEE
T ss_pred             CCCCCC----EEEEECCCCCCHH-------HHHHHHHHhhCCCeE
Confidence            456677    7789999999999       888988888766555

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.77  E-value=1.3e-06  Score=71.37  Aligned_cols=49  Identities=10%  Similarity=0.021  Sum_probs=36.6

Q ss_pred             hhccCccccccchhhhccHHHHHHHh--hhhhCCCCCCccchHHHHHHHhhhhhccCCcccc
Q psy860            7 LSGIGYCPQFNGINEHLTAQEMLECF--SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA   66 (178)
Q Consensus         7 ~~~~~~~~~~~~v~~~~~~g~~~~~~--~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g   66 (178)
                      .+-+|-..+++.++..++.|+    +  ..+.|++|+|||       |+++.+.+...+..+
T Consensus        25 ~~~~g~~~~~~~L~~~i~~g~----~~~~ll~Gp~G~GKT-------tla~~la~~l~~~~~   75 (340)
T 1sxj_C           25 DEVYGQNEVITTVRKFVDEGK----LPHLLFYGPPGTGKT-------STIVALAREIYGKNY   75 (340)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTC----CCCEEEECSSSSSHH-------HHHHHHHHHHHTTSH
T ss_pred             HHhcCcHHHHHHHHHHHhcCC----CceEEEECCCCCCHH-------HHHHHHHHHHcCCCc
Confidence            345566678899999999998    5  668899999999       777776665444333

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.76  E-value=1.5e-05  Score=65.79  Aligned_cols=45  Identities=16%  Similarity=0.127  Sum_probs=32.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc--cCCccccccccc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR--FSPFQAAQNSLL   71 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~--~~~~~~g~i~~~   71 (178)
                      ..+|++++++++       ..+++|.+|+|||       |++..++|  +.+...|.++..
T Consensus        24 ~~~l~~i~~~lp-------~I~vvG~~~sGKS-------SLln~l~g~~~lp~~~~~vT~~   70 (360)
T 3t34_A           24 SSALPTLWDSLP-------AIAVVGGQSSGKS-------SVLESIVGKDFLPRGSGIVTRR   70 (360)
T ss_dssp             SCCC----CCCC-------EEEEECBTTSSHH-------HHHHHHHTSCCSCCCSSSCCCS
T ss_pred             ccccccccccCC-------EEEEECCCCCcHH-------HHHHHHhCCCcCCCCCCcccCc
Confidence            468999999998       4779999999999       99999998  556666665433

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.71  E-value=0.00017  Score=56.85  Aligned_cols=37  Identities=14%  Similarity=0.013  Sum_probs=31.0

Q ss_pred             ccccccchhhhccH---HHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860           12 YCPQFNGINEHLTA---QEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR   59 (178)
Q Consensus        12 ~~~~~~~v~~~~~~---g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~   59 (178)
                      ..++|++|||+|..   |+    ..+|+|++|||||       |+.+.+.+
T Consensus        31 ~~~~l~~~~~~i~~~l~g~----~i~l~G~~GsGKS-------Tl~~~La~   70 (250)
T 3nwj_A           31 EQQILKKKAEEVKPYLNGR----SMYLVGMMGSGKT-------TVGKIMAR   70 (250)
T ss_dssp             -CHHHHHHHHTTHHHHTTC----CEEEECSTTSCHH-------HHHHHHHH
T ss_pred             cchhhhhhhhhhhhhcCCC----EEEEECCCCCCHH-------HHHHHHHH
Confidence            35799999999999   99    7889999999999       66665554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.62  E-value=0.0003  Score=53.10  Aligned_cols=25  Identities=4%  Similarity=-0.007  Sum_probs=20.3

Q ss_pred             HHH-HHhCCCCeEEeeCCCCCCCCCC
Q psy860          152 TAM-ALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       152 IAr-aL~~~P~~lllDEPt~gLD~~~  176 (178)
                      .|+ +++.+|.+++|||||+++|..+
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~  141 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTET  141 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSC
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCC
Confidence            455 7888888999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.36  E-value=3.3e-05  Score=63.23  Aligned_cols=43  Identities=5%  Similarity=-0.015  Sum_probs=30.6

Q ss_pred             cccccchhhhccHHHH--HHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860           13 CPQFNGINEHLTAQEM--LECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP   62 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~--~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~   62 (178)
                      ..++++++..+..++.  .-++.+|.|+||||||       |+++++.++..
T Consensus        73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKS-------Tl~~~L~~ll~  117 (321)
T 3tqc_A           73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKS-------TTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHH-------HHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHH-------HHHHHHHHHhc
Confidence            3567777777665530  1124779999999999       88888888754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.15  E-value=0.0012  Score=54.33  Aligned_cols=40  Identities=13%  Similarity=-0.025  Sum_probs=30.4

Q ss_pred             ccCcCCCCChHHHHHHHHHHHHhCCCCeEEee-CCCCCCCCC
Q psy860          135 RHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK-LPFSSQNLY  175 (178)
Q Consensus       135 ~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD-EPt~gLD~~  175 (178)
                      .+..+..+|++++|++. +.+...++-++++| +|++++|..
T Consensus       225 ~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~  265 (357)
T 2e87_A          225 LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLE  265 (357)
T ss_dssp             SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHH
T ss_pred             cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHH
Confidence            34556778999988776 56666777888999 998888754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.66  E-value=0.00025  Score=51.91  Aligned_cols=49  Identities=10%  Similarity=-0.081  Sum_probs=30.9

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhcc-ceEEecCC
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLS-GIGYCPQF   91 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~-~ig~v~Q~   91 (178)
                      +..|.|++|||||       |+.+.+.+..    |.+.+++.++......++ .+|+.+|+
T Consensus        10 ~i~l~G~~GsGKS-------Tl~~~l~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~   59 (175)
T 1knq_A           10 IYVLMGVSGSGKS-------AVASEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLND   59 (175)
T ss_dssp             EEEEECSTTSCHH-------HHHHHHHHHH----TCEEEEGGGGCCHHHHHHHHTTCCCCH
T ss_pred             EEEEEcCCCCCHH-------HHHHHHHHhh----CcEEEeCccccchHHHHHhhcCcCCCc
Confidence            6779999999999       7777776543    556677766543222211 24555554

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.44  E-value=0.01  Score=50.88  Aligned_cols=27  Identities=15%  Similarity=-0.161  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860          144 GGNKRKLSTAMALIGDRDDGFQKLPFS  170 (178)
Q Consensus       144 gGqkQRv~IAraL~~~P~~lllDEPt~  170 (178)
                      +++++|..+++|....|.+|++||+.+
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~  119 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDA  119 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhh
Confidence            678889999999999999999999943

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.43  E-value=0.00063  Score=55.10  Aligned_cols=27  Identities=7%  Similarity=0.229  Sum_probs=23.6

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCcc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSG   44 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~   44 (178)
                      +.|+++.--+.+|+    +..|.|++|+|||
T Consensus        56 ~~LD~~lgGl~~G~----l~li~G~pG~GKT   82 (315)
T 3bh0_A           56 TELDRMTYGYKRRN----FVLIAARPSMGKT   82 (315)
T ss_dssp             HHHHHHHSSBCTTC----EEEEECCTTSSHH
T ss_pred             HHHHhhcCCCCCCc----EEEEEeCCCCCHH
Confidence            56888877799999    7779999999999

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.34  E-value=0.0027  Score=48.81  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=33.2

Q ss_pred             hhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc
Q psy860           19 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI   75 (178)
Q Consensus        19 v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~   75 (178)
                      -+.+.+.|+    +.+|.|+||||||       |+++.+.+.    .|.+.+.+++.
T Consensus        13 ~~~~~~~g~----~i~i~G~~GsGKS-------Tl~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           13 KYAEGTQPF----TVLIEGNIGSGKT-------TYLNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             CBTTTCCCE----EEEEECSTTSCHH-------HHHHTTGGG----TTTEEEECCTH
T ss_pred             ccCCCCCce----EEEEECCCCCCHH-------HHHHHHHhc----cCCeEEEecCH
Confidence            344667788    8889999999999       999998887    56677766654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.31  E-value=0.0017  Score=49.22  Aligned_cols=54  Identities=11%  Similarity=0.057  Sum_probs=37.1

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhcc---CCcccccccc--------ccccccc---HHhhccceEEecCCC
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF---SPFQAAQNSL--------LMTNIMH---LFQYLSGIGYCPQFN   92 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~---~~~~~g~i~~--------~g~~~~~---~~~~~~~ig~v~Q~~   92 (178)
                      ..+|.|++|||||       |+.+.+.+.   ..++.|.+..        .|.++.+   ..++++.+++++|++
T Consensus         7 ~i~i~G~~GsGKS-------Tl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            7 VITIDGPSGAGKG-------TLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             EEEEECCTTSSHH-------HHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            4679999999999       666655543   3678888766        4554432   345667788888753

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=94.60  E-value=0.0048  Score=45.44  Aligned_cols=30  Identities=23%  Similarity=0.111  Sum_probs=23.4

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCc-ccccc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-QAAQN   68 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-~~g~i   68 (178)
                      +.+|+||||||||       ||++.+.+..++ ..+.+
T Consensus         7 ~i~i~GpsGsGKS-------TL~~~L~~~~~~~~~~~i   37 (180)
T 1kgd_A            7 TLVLLGAHGVGRR-------HIKNTLITKHPDRFAYPI   37 (180)
T ss_dssp             EEEEECCTTSSHH-------HHHHHHHHHCTTTEECCC
T ss_pred             EEEEECCCCCCHH-------HHHHHHHhhCCccEEEee
Confidence            6779999999999       888888887653 34444

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=94.37  E-value=0.0018  Score=53.67  Aligned_cols=81  Identities=11%  Similarity=-0.004  Sum_probs=53.3

Q ss_pred             ccccchhh--hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc-cccccccccHHhhccceEEecC
Q psy860           14 PQFNGINE--HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN-SLLMTNIMHLFQYLSGIGYCPQ   90 (178)
Q Consensus        14 ~~~~~v~~--~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i-~~~g~~~~~~~~~~~~ig~v~Q   90 (178)
                      +.|+.+--  -++.|+    +..|.|++|+|||       ||+.+++....+..|.+ +++++...... +.+++|+.+|
T Consensus        47 ~~LD~~Lg~GGi~~G~----i~~I~GppGsGKS-------TLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~  114 (356)
T 3hr8_A           47 LAIDIATGVGGYPRGR----IVEIFGQESSGKT-------TLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLK  114 (356)
T ss_dssp             HHHHHHTSSSSEETTE----EEEEEESTTSSHH-------HHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGG
T ss_pred             HHHHHHhccCCccCCc----EEEEECCCCCCHH-------HHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchh
Confidence            34555433  577888    5669999999999       88888777655555654 66666544332 3456787777


Q ss_pred             CCCCCCCCCHHHHHHH
Q psy860           91 FNGINEHLTAQEMLEC  106 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~  106 (178)
                      +..+....++.+.+..
T Consensus       115 ~l~i~~~~~~e~~l~~  130 (356)
T 3hr8_A          115 SLLISQPDHGEQALEI  130 (356)
T ss_dssp             GCEEECCSSHHHHHHH
T ss_pred             hhhhhhccCHHHHHHH
Confidence            7655556677665543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.33  E-value=0.0037  Score=46.89  Aligned_cols=41  Identities=7%  Similarity=0.024  Sum_probs=30.9

Q ss_pred             ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc
Q psy860           23 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN   74 (178)
Q Consensus        23 ~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~   74 (178)
                      ...|+    +.+|.|++|||||       |+++.+.+..++..|.+.+.+.+
T Consensus        19 ~~~~~----~i~i~G~~GsGKs-------tl~~~l~~~~~~~~~~v~~~~~d   59 (201)
T 1rz3_A           19 TAGRL----VLGIDGLSRSGKT-------TLANQLSQTLREQGISVCVFHMD   59 (201)
T ss_dssp             CSSSE----EEEEEECTTSSHH-------HHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             cCCCe----EEEEECCCCCCHH-------HHHHHHHHHHhhcCCeEEEeccC
Confidence            45566    7789999999999       88888888776667776554443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.11  E-value=0.039  Score=46.78  Aligned_cols=30  Identities=17%  Similarity=0.160  Sum_probs=22.4

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN   68 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i   68 (178)
                      +..+.|++|+|||       |++..+.....+..+.+
T Consensus        99 vI~lvG~~GsGKT-------Tt~~kLA~~l~~~G~kV  128 (433)
T 3kl4_A           99 IIMLVGVQGSGKT-------TTAGKLAYFYKKRGYKV  128 (433)
T ss_dssp             EEEECCCTTSCHH-------HHHHHHHHHHHHTTCCE
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHHHHcCCeE
Confidence            5678899999999       77777776655554444

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.01  E-value=0.0027  Score=51.93  Aligned_cols=49  Identities=10%  Similarity=0.067  Sum_probs=37.5

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM   72 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g   72 (178)
                      ..+++++++++..+.    ..++.|++|+|||       |++..+.+...+..+.+.+.+
T Consensus        43 ~~~~~~l~~~~~~~~----~i~i~G~~g~GKS-------Tl~~~l~~~~~~~~~~v~v~~   91 (341)
T 2p67_A           43 TQLLDAIMPYCGNTL----RLGVTGTPGAGKS-------TFLEAFGMLLIREGLKVAVIA   91 (341)
T ss_dssp             HHHHHHHGGGCSCSE----EEEEEECTTSCHH-------HHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHhCCcccCCCE----EEEEEcCCCCCHH-------HHHHHHHHHHHhcCCeEEEEe
Confidence            467889999999988    7789999999999       777777766555555544433

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=93.83  E-value=0.01  Score=45.08  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=18.8

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSP   62 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~   62 (178)
                      +.+|.||||+|||       ||++.+.+..+
T Consensus        21 ~ivl~GPSGaGKs-------TL~~~L~~~~~   44 (197)
T 3ney_A           21 TLVLIGASGVGRS-------HIKNALLSQNP   44 (197)
T ss_dssp             EEEEECCTTSSHH-------HHHHHHHHHCT
T ss_pred             EEEEECcCCCCHH-------HHHHHHHhhCC
Confidence            6789999999999       66666665543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=93.80  E-value=0.0057  Score=53.20  Aligned_cols=47  Identities=21%  Similarity=0.130  Sum_probs=36.2

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM   72 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g   72 (178)
                      .++.++++++ .|+    ...+.||+|+|||       |+++.+.+.+.+..+.+.+.+
T Consensus        97 ~~l~~~~~~~-~g~----~vll~Gp~GtGKT-------tlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A           97 LAVQKLTKSL-KGP----ILCLAGPPGVGKT-------SLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             HHHHHHSSSC-CSC----EEEEESSSSSSHH-------HHHHHHHHHHTCEEEEECCCC
T ss_pred             HHHHHhcccC-CCC----EEEEECCCCCCHH-------HHHHHHHHhcCCCeEEEEecc
Confidence            3556666666 455    5669999999999       888988888777778876665

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=93.75  E-value=0.0036  Score=54.70  Aligned_cols=43  Identities=9%  Similarity=-0.125  Sum_probs=34.8

Q ss_pred             hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc-cc-ccccccc
Q psy860           22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA-QN-SLLMTNI   75 (178)
Q Consensus        22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g-~i-~~~g~~~   75 (178)
                      .+..|+    ..+|+|+||||||       |+++.+.+.+.|++| .+ ++++.++
T Consensus       365 ~~~~G~----iI~LiG~sGSGKS-------TLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGF----TVFFTGLSGAGKS-------TLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCE----EEEEEESSCHHHH-------HHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccce----EEEEECCCCChHH-------HHHHHHHHhhcccCCceEEEECCcHH
Confidence            456777    6789999999999       999999998888876 56 4777655

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.48  E-value=0.01  Score=48.72  Aligned_cols=41  Identities=7%  Similarity=-0.240  Sum_probs=28.0

Q ss_pred             CcCCCCChHHHHHHHHHHHHh-CCCCeEEeeC---CC------CCCCCCCC
Q psy860          137 RVSGRYSGGNKRKLSTAMALI-GDRDDGFQKL---PF------SSQNLYNT  177 (178)
Q Consensus       137 ~~~~~LSgGqkQRv~IAraL~-~~P~~lllDE---Pt------~gLD~~~~  177 (178)
                      +.+..+|+|++|+..+++++. .+|++++|||   |+      +++|+..+
T Consensus       254 ~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r  304 (365)
T 1lw7_A          254 TQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQR  304 (365)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSH
T ss_pred             HHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHH
Confidence            344456778888888888874 6999999999   65      58898754

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=93.37  E-value=0.01  Score=49.09  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=27.4

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR   59 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~   59 (178)
                      ..++++++++..|     +.+|+|+||+|||       |++..+.+
T Consensus        15 ~~~~~~~~~~~~g-----~~~i~G~nG~GKt-------tll~ai~~   48 (359)
T 2o5v_A           15 RNLAPGTLNFPEG-----VTGIYGENGAGKT-------NLLEAAYL   48 (359)
T ss_dssp             TTCCSEEEECCSE-----EEEEECCTTSSHH-------HHHHHHHH
T ss_pred             cceeeeEEEEcCC-----eEEEECCCCCChh-------HHHHHHHH
Confidence            5688999999988     5679999999999       55555543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=92.96  E-value=0.015  Score=43.75  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.1

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF   63 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~   63 (178)
                      +.+|.||||+|||       |+++.+.+..++
T Consensus        10 ~i~l~GpsGsGKs-------Tl~~~L~~~~~~   34 (208)
T 3tau_A           10 LIVLSGPSGVGKG-------TVREAVFKDPET   34 (208)
T ss_dssp             EEEEECCTTSCHH-------HHHHHHHHSTTC
T ss_pred             EEEEECcCCCCHH-------HHHHHHHhhCCC
Confidence            6789999999999       888888777655

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=92.84  E-value=0.015  Score=48.87  Aligned_cols=34  Identities=9%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc
Q psy860           21 EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA   65 (178)
Q Consensus        21 ~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~   65 (178)
                      +++..++    +.+|+|+||+|||       |++..+.++..+++
T Consensus        21 ~~~~~~~----~~~i~G~nG~GKs-------tll~ai~~~~~~~~   54 (430)
T 1w1w_A           21 VGFGESN----FTSIIGPNGSGKS-------NMMDAISFVLGVRS   54 (430)
T ss_dssp             EECTTCS----EEEEECSTTSSHH-------HHHHHHHHHTTC--
T ss_pred             EEecCCC----EEEEECCCCCCHH-------HHHHHHHhhhcccc
Confidence            4466677    8889999999999       88887777665543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=92.66  E-value=0.014  Score=44.92  Aligned_cols=37  Identities=11%  Similarity=0.120  Sum_probs=21.8

Q ss_pred             cccchhhhcc---HHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860           15 QFNGINEHLT---AQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP   62 (178)
Q Consensus        15 ~~~~v~~~~~---~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~   62 (178)
                      -|.++|+.+.   .|.    +.++.|++|||||       |+++.+.....
T Consensus        12 ~~~~~~~~~~~~~~g~----~i~i~G~~GsGKs-------T~~~~l~~~l~   51 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSA----FITFEGPEGSGKT-------TVINEVYHRLV   51 (229)
T ss_dssp             --------CCCCCCCE----EEEEECCTTSCHH-------HHHHHHHHHHT
T ss_pred             CccCCCeeEeecCCCe----EEEEEcCCCCCHH-------HHHHHHHHHHh
Confidence            5888888887   776    8899999999999       55555554433

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=91.83  E-value=0.019  Score=49.39  Aligned_cols=32  Identities=16%  Similarity=0.280  Sum_probs=26.3

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhh
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSA   57 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~   57 (178)
                      ..++++++++..|     +.+|+|+||+|||       ||+..+
T Consensus        49 ~~~~~~~l~f~~g-----~n~i~G~NGaGKS-------~lleAl   80 (517)
T 4ad8_A           49 ATITQLELELGGG-----FCAFTGETGAGKS-------IIVDAL   80 (517)
T ss_dssp             TTBSCEEEECCCS-----EEEEEESHHHHHH-------HHTHHH
T ss_pred             cceeeEEEecCCC-----eEEEEcCCCCCHH-------HHHHHH
Confidence            4678899999887     6789999999999       665554

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=91.34  E-value=0.13  Score=44.09  Aligned_cols=41  Identities=12%  Similarity=0.031  Sum_probs=29.5

Q ss_pred             ccCcCCCCChHHHHHHHHHHHHh--C---------------CCCeEEeeCCCCCCCCCC
Q psy860          135 RHRVSGRYSGGNKRKLSTAMALI--G---------------DRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       135 ~~~~~~~LSgGqkQRv~IAraL~--~---------------~P~~lllDEPt~gLD~~~  176 (178)
                      .++..+.+||||+|..-+|.+.+  +               .-++++|||. +-+|...
T Consensus       373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~  430 (483)
T 3euj_A          373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMS  430 (483)
T ss_dssp             EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHH
T ss_pred             eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHH
Confidence            34457889999999765555433  2               2368999999 9999753

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=91.04  E-value=0.033  Score=49.55  Aligned_cols=60  Identities=13%  Similarity=-0.082  Sum_probs=39.6

Q ss_pred             hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc--cccccccccccccc--HHhhccceEEecCCC
Q psy860           21 EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF--QAAQNSLLMTNIMH--LFQYLSGIGYCPQFN   92 (178)
Q Consensus        21 ~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~--~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~~   92 (178)
                      +.++.++    ..+|+|++|+|||       ||+..+.+...+  ..|++ .+|..+.+  ..+.++++++.+|..
T Consensus         4 ~~~~~~~----~i~IiG~~gaGKT-------TLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~   67 (665)
T 2dy1_A            4 EGGAMIR----TVALVGHAGSGKT-------TLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVA   67 (665)
T ss_dssp             --CCCEE----EEEEEESTTSSHH-------HHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEE
T ss_pred             CccCCCc----EEEEECCCCChHH-------HHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecce
Confidence            4556666    5779999999999       888888866443  56776 55555443  234456777776654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=90.95  E-value=0.038  Score=41.21  Aligned_cols=29  Identities=7%  Similarity=0.035  Sum_probs=22.2

Q ss_pred             hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC
Q psy860           22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS   61 (178)
Q Consensus        22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~   61 (178)
                      .+..++    ..+|.|++|||||       |+.+.+.+..
T Consensus        17 ~~~~~~----~i~i~G~~GsGKS-------Tl~~~L~~~~   45 (207)
T 2qt1_A           17 RGSKTF----IIGISGVTNSGKT-------TLAKNLQKHL   45 (207)
T ss_dssp             CSCCCE----EEEEEESTTSSHH-------HHHHHHHTTS
T ss_pred             cCCCCe----EEEEECCCCCCHH-------HHHHHHHHhc
Confidence            344565    6779999999999       7777777654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=90.89  E-value=0.063  Score=45.12  Aligned_cols=36  Identities=14%  Similarity=0.086  Sum_probs=26.3

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCC------------ccccccccccccc
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSP------------FQAAQNSLLMTNI   75 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~------------~~~g~i~~~g~~~   75 (178)
                      .+|+|++|+|||       ||++.+.+...            +..|.+.++|..+
T Consensus       183 vaivG~~gvGKS-------TLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          183 VAIVGRPNVGKS-------TLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEECSTTSSHH-------HHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             EEEECCCCCCHH-------HHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            679999999999       88888877632            4556666676643

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=90.74  E-value=0.017  Score=43.49  Aligned_cols=46  Identities=11%  Similarity=-0.145  Sum_probs=32.6

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc--cccccccc
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA--QNSLLMTN   74 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g--~i~~~g~~   74 (178)
                      .-.+.+..|.    +..+.|++|+|||       |+.+.+.+...|+.|  .+.+++..
T Consensus        17 r~~~~~~~~~----~i~~~G~~GsGKs-------T~~~~l~~~l~~~~g~~~~~~~~d~   64 (211)
T 1m7g_A           17 RTELRNQRGL----TIWLTGLSASGKS-------TLAVELEHQLVRDRRVHAYRLDGDN   64 (211)
T ss_dssp             HHHHHTSSCE----EEEEECSTTSSHH-------HHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             hhcccCCCCC----EEEEECCCCCCHH-------HHHHHHHHHhccccCCcEEEECChH
Confidence            3345666776    7889999999999       777777766665666  55565543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=90.65  E-value=0.033  Score=39.90  Aligned_cols=26  Identities=8%  Similarity=0.178  Sum_probs=18.3

Q ss_pred             cchhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860           17 NGINEHLTAQEMLECFSALRGIPGVKSGPII   47 (178)
Q Consensus        17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~   47 (178)
                      ++.++++..|     +.+|+|+||+|||+++
T Consensus        15 ~~~~i~f~~g-----~~~I~G~NGsGKStil   40 (149)
T 1f2t_A           15 SDTVVEFKEG-----INLIIGQNGSGKSSLL   40 (149)
T ss_dssp             SSEEEECCSE-----EEEEECCTTSSHHHHH
T ss_pred             cceEEEcCCC-----eEEEECCCCCCHHHHH
Confidence            3444555554     6789999999999433

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=89.85  E-value=0.042  Score=44.99  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=27.8

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN   74 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~   74 (178)
                      ..+|+|++|+|||       ||+..+.+...++.+.+.+.+.+
T Consensus        76 ~v~lvG~pgaGKS-------TLln~L~~~~~~~~~~v~V~~~d  111 (349)
T 2www_A           76 RVGLSGPPGAGKS-------TFIEYFGKMLTERGHKLSVLAVD  111 (349)
T ss_dssp             EEEEECCTTSSHH-------HHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEEcCCCCCHH-------HHHHHHHHHhhhcCCeEEEEeec
Confidence            5789999999999       88888887766666666555543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=89.82  E-value=0.063  Score=38.53  Aligned_cols=24  Identities=13%  Similarity=-0.080  Sum_probs=19.2

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSP   62 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~   62 (178)
                      +.+|.|++|||||       |+.+.+.+...
T Consensus         6 ~i~l~G~~GsGKS-------Tl~~~La~~l~   29 (173)
T 1kag_A            6 NIFLVGPMGAGKS-------TIGRQLAQQLN   29 (173)
T ss_dssp             CEEEECCTTSCHH-------HHHHHHHHHTT
T ss_pred             eEEEECCCCCCHH-------HHHHHHHHHhC
Confidence            5679999999999       77777776543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=89.77  E-value=0.042  Score=44.04  Aligned_cols=47  Identities=13%  Similarity=0.121  Sum_probs=34.9

Q ss_pred             cc-hhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc
Q psy860           17 NG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI   75 (178)
Q Consensus        17 ~~-v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~   75 (178)
                      ++ ++++.+ ++    +.++.|++|+|||       |++..+.+...+..+.+.+.+.+.
T Consensus        89 ~~~i~~~~~-~~----vi~i~G~~G~GKT-------T~~~~la~~~~~~g~~v~l~~~D~  136 (297)
T 1j8m_F           89 EPKVIPDKI-PY----VIMLVGVQGTGKT-------TTAGKLAYFYKKKGFKVGLVGADV  136 (297)
T ss_dssp             CCCCSCSSS-SE----EEEEECSSCSSTT-------HHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccccccCCC-Ce----EEEEECCCCCCHH-------HHHHHHHHHHHHCCCeEEEEecCC
Confidence            45 788776 77    6778999999999       777877777666666665555443

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=89.58  E-value=0.028  Score=41.63  Aligned_cols=35  Identities=9%  Similarity=0.003  Sum_probs=28.8

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR   59 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~   59 (178)
                      .++++++|+..+..+     .+++|++|+|||       ||+..+.+
T Consensus        13 ~~~l~~~~~~~~~~k-----i~lvG~~~vGKS-------sLi~~l~~   47 (198)
T 1f6b_A           13 SSVLQFLGLYKKTGK-----LVFLGLDNAGKT-------TLLHMLKD   47 (198)
T ss_dssp             CHHHHHHTCTTCCEE-----EEEEEETTSSHH-------HHHHHHSC
T ss_pred             HHHHHHhhccCCCcE-----EEEECCCCCCHH-------HHHHHHhc
Confidence            478999999988776     579999999999       77776654

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=89.23  E-value=0.037  Score=50.12  Aligned_cols=39  Identities=3%  Similarity=-0.148  Sum_probs=34.1

Q ss_pred             cCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC-CCCC
Q psy860          136 HRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS-SQNL  174 (178)
Q Consensus       136 ~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~-gLD~  174 (178)
                      +..+..+|.|+.+|..++++++.+++++|+|||.. +||.
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~  224 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLAT  224 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHH
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccch
Confidence            44566789999999999999999999999999996 7763

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=89.18  E-value=0.043  Score=46.35  Aligned_cols=48  Identities=8%  Similarity=0.004  Sum_probs=37.0

Q ss_pred             cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc
Q psy860           17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH   77 (178)
Q Consensus        17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~   77 (178)
                      +++++.  .++    +.++.|++|+|||       |+...+.+...++.+.+.+.+.+...
T Consensus        91 ~~i~l~--~~~----vi~i~G~~GsGKT-------T~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           91 RLPVLK--DRN----LWFLVGLQGSGKT-------TTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             CCCCCC--SSE----EEEEECCTTSSHH-------HHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             ccccCC--CCe----EEEEECCCCCCHH-------HHHHHHHHHHHHcCCeEEEeeccccC
Confidence            567777  566    6778899999999       88888888877777777666655433

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=87.97  E-value=0.39  Score=38.65  Aligned_cols=24  Identities=21%  Similarity=0.156  Sum_probs=18.8

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPF   63 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~   63 (178)
                      ..|.|++|+|||       |+++.+.+...+
T Consensus        47 ~li~G~~G~GKT-------tl~~~l~~~~~~   70 (389)
T 1fnn_A           47 ATLLGRPGTGKT-------VTLRKLWELYKD   70 (389)
T ss_dssp             EEEECCTTSSHH-------HHHHHHHHHHTT
T ss_pred             EEEECCCCCCHH-------HHHHHHHHHHhh
Confidence            458899999999       888877765443

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=87.27  E-value=0.087  Score=44.31  Aligned_cols=32  Identities=9%  Similarity=0.051  Sum_probs=27.4

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF   60 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~   60 (178)
                      |+++.+..|+    ..+|+|++|+||+       ||++.+.+.
T Consensus       166 D~~~pi~rGQ----r~~IvG~sG~GKT-------tLl~~Iar~  197 (422)
T 3ice_A          166 DLASPIGRGQ----RGLIVAPPKAGKT-------MLLQNIAQS  197 (422)
T ss_dssp             HHHSCCBTTC----EEEEECCSSSSHH-------HHHHHHHHH
T ss_pred             eeeeeecCCc----EEEEecCCCCChh-------HHHHHHHHH
Confidence            8999999999    7889999999999       666666554

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=87.26  E-value=0.044  Score=39.84  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=19.0

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF   63 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~   63 (178)
                      +..+.|++|||||       |+.+.+.+.+++
T Consensus         7 ~i~l~G~~GsGKS-------T~~~~L~~~l~~   31 (179)
T 2pez_A            7 TVWLTGLSGAGKT-------TVSMALEEYLVC   31 (179)
T ss_dssp             EEEEECCTTSSHH-------HHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHH-------HHHHHHHHHHhh
Confidence            6679999999999       776766655433

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=86.82  E-value=0.35  Score=40.59  Aligned_cols=27  Identities=7%  Similarity=0.194  Sum_probs=21.7

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCcc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSG   44 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~   44 (178)
                      +.|+.+.--+..|+    +..|.|++|+|||
T Consensus       188 ~~LD~~lgGl~~G~----l~ii~G~pg~GKT  214 (444)
T 2q6t_A          188 KELDQLIGTLGPGS----LNIIAARPAMGKT  214 (444)
T ss_dssp             HHHHHHHCCCCTTC----EEEEEECTTSCHH
T ss_pred             HhhhhhcCCcCCCc----EEEEEeCCCCCHH
Confidence            45666665688898    6779999999999

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=86.04  E-value=0.1  Score=39.15  Aligned_cols=26  Identities=12%  Similarity=0.226  Sum_probs=18.8

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchHH
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPIID   48 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~   48 (178)
                      +.++.+..|     +..|.|+||+|||+++.
T Consensus        16 ~~~i~f~~~-----~~~I~G~NgsGKStil~   41 (203)
T 3qks_A           16 DTVVEFKEG-----INLIIGQNGSGKSSLLD   41 (203)
T ss_dssp             SEEEECCSE-----EEEEECCTTSSHHHHHH
T ss_pred             ceEEEeCCC-----eEEEEcCCCCCHHHHHH
Confidence            444555554     77899999999995553

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=85.97  E-value=0.19  Score=40.37  Aligned_cols=24  Identities=8%  Similarity=0.050  Sum_probs=18.7

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSP   62 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~   62 (178)
                      ...|.|++|+|||       |+++.+.+...
T Consensus        47 ~vli~G~~G~GKT-------tl~~~l~~~~~   70 (386)
T 2qby_A           47 NIFIYGLTGTGKT-------AVVKFVLSKLH   70 (386)
T ss_dssp             CEEEEECTTSSHH-------HHHHHHHHHHH
T ss_pred             eEEEECCCCCCHH-------HHHHHHHHHHH
Confidence            4668899999999       78877766543

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=85.31  E-value=0.11  Score=42.06  Aligned_cols=25  Identities=8%  Similarity=0.173  Sum_probs=17.8

Q ss_pred             chhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860           18 GINEHLTAQEMLECFSALRGIPGVKSGPII   47 (178)
Q Consensus        18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~   47 (178)
                      +..+++..|     +.+|+|+||+|||+++
T Consensus        16 ~~~i~f~~~-----~~~i~G~NGsGKS~ll   40 (339)
T 3qkt_A           16 DTVVEFKEG-----INLIIGQNGSGKSSLL   40 (339)
T ss_dssp             EEEEECCSE-----EEEEECCTTSSHHHHH
T ss_pred             CeEEcCCCC-----eEEEECCCCCCHHHHH
Confidence            344555554     6789999999999333

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=85.19  E-value=0.0018  Score=51.11  Aligned_cols=36  Identities=11%  Similarity=-0.054  Sum_probs=30.7

Q ss_pred             CcCCCCChHHHHHHHHHHHHhCCCCe--EEeeCCCCCCCC
Q psy860          137 RVSGRYSGGNKRKLSTAMALIGDRDD--GFQKLPFSSQNL  174 (178)
Q Consensus       137 ~~~~~LSgGqkQRv~IAraL~~~P~~--lllDEPt~gLD~  174 (178)
                      ++.-.+|+|  ||+++++++..+|++  +|+||.|+.+|.
T Consensus       168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~  205 (261)
T 2eyu_A          168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYS  205 (261)
T ss_dssp             EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHH
T ss_pred             EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHH
Confidence            333457888  899999999999999  999999998875

>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B

Probab=85.15  E-value=0.063  Score=41.75  Aligned_cols=52  Identities=21%  Similarity=0.058  Sum_probs=37.5

Q ss_pred             hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860          110 LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      .-+++.....+.++++-+.+|. +..++..+.||||..|+...+++|+..|+-
T Consensus        43 ~l~~s~~~~s~~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~~~~~   94 (265)
T 1b9m_A           43 DAGISYKSAWDAINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQLYDL   94 (265)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHHHHHH
Confidence            3355545556678888888999 788999999999999999999999987754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=85.08  E-value=0.12  Score=42.74  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=25.3

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPII   47 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~   47 (178)
                      .+++.+++.++.|+..  ...|+|++|+|||++.
T Consensus        10 ~il~~l~~~i~~g~~~--~i~l~G~~G~GKTTl~   41 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRV--CVILVGSPGSGKSTIA   41 (359)
T ss_dssp             HHHHHHHHTTTTCSCE--EEEEECCTTSSHHHHH
T ss_pred             HHHHHHHHHhccCCee--EEEEECCCCCcHHHHH
Confidence            4788999999999821  1678999999999444

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=83.30  E-value=0.16  Score=37.00  Aligned_cols=34  Identities=9%  Similarity=0.020  Sum_probs=17.4

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR   59 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~   59 (178)
                      .+++++|+..+..+     .+++|.+|+|||       ||+..+.+
T Consensus        12 ~~l~~~~~~~~~~k-----i~~vG~~~vGKS-------sli~~l~~   45 (190)
T 1m2o_B           12 DVLASLGLWNKHGK-----LLFLGLDNAGKT-------TLLHMLKN   45 (190)
T ss_dssp             ------------CE-----EEEEESTTSSHH-------HHHHHHHH
T ss_pred             HHHHHhhccCCccE-----EEEECCCCCCHH-------HHHHHHhc
Confidence            46889998877664     579999999999       77666654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=83.03  E-value=0.3  Score=36.04  Aligned_cols=21  Identities=14%  Similarity=0.066  Sum_probs=17.0

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIR   59 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~   59 (178)
                      ..+|.|++|||||       |+.+.+.+
T Consensus         4 ~i~l~G~~GsGKS-------T~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKT-------TIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHH-------HHHHHHHT
T ss_pred             EEEEECCCCCCHH-------HHHHHHHH
Confidence            4579999999999       77776665

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=82.53  E-value=0.0039  Score=51.74  Aligned_cols=32  Identities=13%  Similarity=0.027  Sum_probs=28.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCe--EEeeCCCCCCCC
Q psy860          141 RYSGGNKRKLSTAMALIGDRDD--GFQKLPFSSQNL  174 (178)
Q Consensus       141 ~LSgGqkQRv~IAraL~~~P~~--lllDEPt~gLD~  174 (178)
                      .+|+|  ||++|++++..+|++  +|+||+|+.||.
T Consensus       283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~  316 (372)
T 2ewv_A          283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYS  316 (372)
T ss_dssp             ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHH
T ss_pred             ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHH
Confidence            45888  899999999999999  999999998884

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=81.70  E-value=0.28  Score=36.14  Aligned_cols=21  Identities=10%  Similarity=0.124  Sum_probs=16.4

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIR   59 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~   59 (178)
                      +..|.|++|||||       |+.+.+.+
T Consensus        20 ~I~l~G~~GsGKS-------Tla~~L~~   40 (202)
T 3t61_A           20 SIVVMGVSGSGKS-------SVGEAIAE   40 (202)
T ss_dssp             CEEEECSTTSCHH-------HHHHHHHH
T ss_pred             EEEEECCCCCCHH-------HHHHHHHH
Confidence            5779999999999       66665543

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=81.28  E-value=0.24  Score=36.77  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=16.0

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIR   59 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~   59 (178)
                      +..|.|++|||||       |+.+.+..
T Consensus        14 ~i~l~G~sGsGKs-------Tl~~~L~~   34 (204)
T 2qor_A           14 PLVVCGPSGVGKG-------TLIKKVLS   34 (204)
T ss_dssp             CEEEECCTTSCHH-------HHHHHHHH
T ss_pred             EEEEECCCCCCHH-------HHHHHHHH
Confidence            5679999999999       55555543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=80.79  E-value=0.33  Score=35.71  Aligned_cols=21  Identities=14%  Similarity=0.009  Sum_probs=16.1

Q ss_pred             hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860           32 FSALRGIPGVKSGPIIDYWIDLLGSAIR   59 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~~~~itll~~~~~   59 (178)
                      ..+|.|++|||||       |+.+.+.+
T Consensus         3 ~i~i~G~~GsGKS-------Tl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKS-------TVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHH-------HHHHHHHH
T ss_pred             EEEEECCCCcCHH-------HHHHHHHH
Confidence            3578999999999       66666554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=80.30  E-value=0.27  Score=38.54  Aligned_cols=50  Identities=10%  Similarity=-0.006  Sum_probs=34.2

Q ss_pred             cCccccccchhhhccHHHHH-------HHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc
Q psy860           10 IGYCPQFNGINEHLTAQEML-------ECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA   66 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~-------~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g   66 (178)
                      +|-..+++.+...+..+...       .....+.|++|+||+       ++.+.+.....++.+
T Consensus        20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt-------~la~~la~~~~~~~~   76 (311)
T 4fcw_A           20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKT-------ELAKTLAATLFDTEE   76 (311)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHH-------HHHHHHHHHHHSCGG
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHH-------HHHHHHHHHHcCCCc
Confidence            36677888888888876421       003568899999999       777766665444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-12
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	1e-09
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-08
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-08
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-07
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-07
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	4e-05
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	7e-05

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 19/101 (18%), Positives = 44/101 (43%)

Query: 73  TNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT 132
            ++ +L      I    Q   +  H+T  E +     ++  P  +    + +  +LL + 
Sbjct: 68  RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE 127

Query: 133 EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN 173
           E  +R   + SGG +++++ A A++ + D      P S+ +
Sbjct: 128 ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 18/88 (20%), Positives = 32/88 (36%)

Query: 72  MTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGL 131
              +    +    I Y P+  G   ++   E L   +        +   +++   ++ GL
Sbjct: 64  KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL 123

Query: 132 TEYRHRVSGRYSGGNKRKLSTAMALIGD 159
            E        YS G  RKL  A AL+ +
Sbjct: 124 GEKIKDRVSTYSKGMVRKLLIARALMVN 151

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 72  MTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGL 131
               + +      I    Q   +  H+T  + +     LR +P  +    +    +LLGL
Sbjct: 70  PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL 129

Query: 132 TEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161
           TE  +R     SGG +++++   A++    
Sbjct: 130 TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 16/82 (19%), Positives = 29/82 (35%)

Query: 80  QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS 139
           +    IG   Q   +    T    +     L   P  +    +   + L+GL +      
Sbjct: 79  KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP 138

Query: 140 GRYSGGNKRKLSTAMALIGDRD 161
              SGG K++++ A AL  +  
Sbjct: 139 SNLSGGQKQRVAIARALASNPK 160

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 22/109 (20%), Positives = 37/109 (33%)

Query: 51  IDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSAL 110
           +  +   +R    +   N   +TN         GI   P+   I   LT  E L   +  
Sbjct: 49  LSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN 108

Query: 111 RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159
           R         +   +     L E   ++ G  SGG ++ L+   AL+  
Sbjct: 109 RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 14/77 (18%), Positives = 29/77 (37%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
           +G   Q   +  HL+  E +     L G         ++   ++L L     R     SG
Sbjct: 74  VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 133

Query: 145 GNKRKLSTAMALIGDRD 161
           G +++++    L+ +  
Sbjct: 134 GQRQRVAIGRTLVAEPS 150

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 85  IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRY-- 142
           IG+  Q   +   LTA E +E     +    +         ++ L + E   R +     
Sbjct: 85  IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144

Query: 143 --SGGNKRKLSTAMALIGD 159
             SGG +++++ A AL  +
Sbjct: 145 QLSGGQQQRVAIARALANN 163

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 84  GIGYCPQFNGINEHLTAQEM-LECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGR 141
            +    Q   +  H+T  E  +E    + G+    +      ++  +G+ E  + +    
Sbjct: 90  RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 149

Query: 142 YSGGNKRKLSTAMALIGD 159
            SGG ++++S A AL  +
Sbjct: 150 LSGGQQQRVSIARALAME 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.06
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.87
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.65
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.85
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.59
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.63
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.19
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.37
d1j8yf2	211	GTPase domain of the signal sequence recognition p	90.35
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	88.65
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	85.28
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	85.2
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	83.24
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	82.82
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	81.49
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	81.27
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	81.22

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-50  Score=318.43  Aligned_cols=163  Identities=16%  Similarity=0.128  Sum_probs=149.8

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----H
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----L   78 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~   78 (178)
                      ++|..+.+...||+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++..     .
T Consensus         9 k~y~~~~~~~~al~~vsl~i~~Ge----~~~iiG~sGsGKS-------TLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~   77 (240)
T d3dhwc1           9 KVFHQGTRTIQALNNVSLHVPAGQ----IYGVIGASGAGKS-------TLIRCVNLLERPTEGSVLVDGQELTTLSESEL   77 (240)
T ss_dssp             EEEECSSCEEEEEEEEEEEECSSC----EEEEEESTTSSHH-------HHHHHHTTSSCCSEEEEEETTEEECTTCHHHH
T ss_pred             EEeCCCCeeEEEeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCccccCCceEEcCeEeeeCChhhh
Confidence            457666555689999999999999    8899999999999       99999999999999999999999854     2


Q ss_pred             HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           79 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        79 ~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      .++|++||||||++++++.+||+||+.++....+.+.++.++++.++++.+||++..++++.+|||||||||+|||||+.
T Consensus        78 ~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~  157 (240)
T d3dhwc1          78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS  157 (240)
T ss_dssp             HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred             hhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhcc
Confidence            35667899999999999999999999999888888888888899999999999999999999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++|||||||+||||.++
T Consensus       158 ~P~lLllDEPt~~LD~~~~  176 (240)
T d3dhwc1         158 NPKVLLCDEATSALDPATT  176 (240)
T ss_dssp             CCSEEEEESGGGSSCHHHH
T ss_pred             CCCeEEeccccccCCHHHh
Confidence            9999999999999999754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-50  Score=319.22  Aligned_cols=158  Identities=18%  Similarity=0.183  Sum_probs=139.8

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEe
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC   88 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v   88 (178)
                      .+|...||+||||+|++||    +.+|+|+||||||       ||+++++|+.+|++|+|.++|+++......+++||||
T Consensus        15 ~yg~~~al~~vsl~v~~Ge----~~~liGpsGaGKS-------TLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v   83 (239)
T d1v43a3          15 RFGNFTAVNKLNLTIKDGE----FLVLLGPSGCGKT-------TTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV   83 (239)
T ss_dssp             EETTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred             EECCEEEEcceeEEECCCC----EEEEECCCCChHH-------HHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEE
Confidence            3466789999999999999    8889999999999       9999999999999999999999998766667789999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860           89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP  168 (178)
Q Consensus        89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP  168 (178)
                      ||++.+|+++||+||+.++...++.++.+.+++++++++.++|++..++++.+|||||||||+|||||+.+|++|+||||
T Consensus        84 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEP  163 (239)
T d1v43a3          84 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP  163 (239)
T ss_dssp             EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred             eechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCC
Confidence            99999999999999999887777777777788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy860          169 FSSQNLYNT  177 (178)
Q Consensus       169 t~gLD~~~~  177 (178)
                      |+||||.++
T Consensus       164 ts~LD~~~~  172 (239)
T d1v43a3         164 LSNLDAKLR  172 (239)
T ss_dssp             TTTSCHHHH
T ss_pred             cccCCHHHH
Confidence            999999754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-50  Score=318.00  Aligned_cols=157  Identities=17%  Similarity=0.166  Sum_probs=107.8

Q ss_pred             cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEec
Q psy860           10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP   89 (178)
Q Consensus        10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~   89 (178)
                      +|..+||+||||+|++||    +.+|+||||||||       ||++++.|+.+|++|+|.++|+++.+....+++|||||
T Consensus        10 yg~~~~l~~isl~i~~Ge----i~~liGpsGsGKS-------TLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~   78 (232)
T d2awna2          10 WGEVVVSKDINLDIHEGE----FVVFVGPSGCGKS-------TLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF   78 (232)
T ss_dssp             ETTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEEC
T ss_pred             ECCEEEEeeeEEEEcCCC----EEEEECCCCChHH-------HHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeec
Confidence            356789999999999999    8889999999999       99999999999999999999999987766778899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860           90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF  169 (178)
Q Consensus        90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt  169 (178)
                      |++.+++++||+||+.++....+.++++.++++.++++.+++.+..++++.+|||||||||+|||||+++|++|+|||||
T Consensus        79 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPt  158 (232)
T d2awna2          79 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  158 (232)
T ss_dssp             SSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTT
T ss_pred             cccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            99999999999999999888888888888889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy860          170 SSQNLYNT  177 (178)
Q Consensus       170 ~gLD~~~~  177 (178)
                      +||||.++
T Consensus       159 s~LD~~~~  166 (232)
T d2awna2         159 SNLDAALR  166 (232)
T ss_dssp             TTSCHHHH
T ss_pred             CCCCHHHH
Confidence            99999753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.7e-50  Score=315.91  Aligned_cols=161  Identities=14%  Similarity=0.075  Sum_probs=146.8

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----   78 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----   78 (178)
                      ++|.+|  ...||+||||+|++||    +.+|+|+||||||       |+++++.|+.+|++|+|.++|+++...     
T Consensus        11 k~y~~g--~~~aL~~vsl~i~~Ge----~~~iiG~sGsGKS-------Tll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~   77 (242)
T d1oxxk2          11 KVFKKG--KVVALDNVNINIENGE----RFGILGPSGAGKT-------TFMRIIAGLDVPSTGELYFDDRLVASNGKLIV   77 (242)
T ss_dssp             EEEGGG--TEEEEEEEEEEECTTC----EEEEECSCHHHHH-------HHHHHHHTSSCCSEEEEEETTEEEEETTEESS
T ss_pred             EEECCC--CEEEEeceEEEECCCC----EEEEECCCCCcHH-------HHHHHHHcCcCCCCceEEECCEEeecCchhhc
Confidence            456544  3689999999999999    8889999999999       999999999999999999999998653     


Q ss_pred             HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860           79 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG  158 (178)
Q Consensus        79 ~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~  158 (178)
                      ...|++||||||++.+++++||+||+.++....+.++.+.++++.++++.++|++..++++.+|||||||||+|||||++
T Consensus        78 ~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~  157 (242)
T d1oxxk2          78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK  157 (242)
T ss_dssp             CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred             chhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhh
Confidence            33467899999999999999999999998877777777788899999999999999999999999999999999999999


Q ss_pred             CCCeEEeeCCCCCCCCCCC
Q psy860          159 DRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       159 ~P~~lllDEPt~gLD~~~~  177 (178)
                      +|++|||||||+||||.++
T Consensus       158 ~P~llllDEPt~~LD~~~~  176 (242)
T d1oxxk2         158 DPSLLLLDEPFSNLDARMR  176 (242)
T ss_dssp             CCSEEEEESTTTTSCGGGH
T ss_pred             cccceeecCCccCCCHHHH
Confidence            9999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=4.6e-49  Score=310.72  Aligned_cols=158  Identities=18%  Similarity=0.153  Sum_probs=145.8

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH------hhc
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF------QYL   82 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~------~~~   82 (178)
                      .+|.++||+||||+|++||    +.+|+|+||||||       |++++++|+.+|++|+|.++|+++....      ..+
T Consensus        12 ~yg~~~al~~vsl~i~~Ge----~~~liG~sGaGKS-------Tll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~   80 (240)
T d1g2912          12 VFGEVTAVREMSLEVKDGE----FMILLGPSGCGKT-------TTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD   80 (240)
T ss_dssp             EETTEEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred             EECCEEEEcceeeEEcCCC----EEEEECCCCChHH-------HHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence            3466789999999999999    8889999999999       9999999999999999999999986542      235


Q ss_pred             cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860           83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD  162 (178)
Q Consensus        83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~  162 (178)
                      +.||||||++.+++++||+||+.++...++.+..+.++++.++++.+++++..+++|.+|||||||||+|||||+++|++
T Consensus        81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~i  160 (240)
T d1g2912          81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV  160 (240)
T ss_dssp             SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred             ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            68999999999999999999999998888887777888999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCC
Q psy860          163 GFQKLPFSSQNLYNT  177 (178)
Q Consensus       163 lllDEPt~gLD~~~~  177 (178)
                      |||||||+||||.++
T Consensus       161 LllDEPt~~LD~~~~  175 (240)
T d1g2912         161 FLMDEPLSNLDAKLR  175 (240)
T ss_dssp             EEEECTTTTSCHHHH
T ss_pred             EEecCCCcccCHHHH
Confidence            999999999999754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.5e-48  Score=306.22  Aligned_cols=163  Identities=17%  Similarity=0.142  Sum_probs=140.8

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----   78 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----   78 (178)
                      ++|..+-..+.||+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|+++|+++...     
T Consensus         9 k~y~~~~~~~~al~~isl~i~~Ge----~~~iiG~sGsGKS-------TLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~   77 (230)
T d1l2ta_           9 KTYKMGEEIIYALKNVNLNIKEGE----FVSIMGPSGSGKS-------TMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL   77 (230)
T ss_dssp             EEEEETTEEEEEEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred             EEeCCCCeeEEEEeceEEEEcCCC----EEEEECCCCCCcc-------hhhHhccCCCCCCcceeEECCEEcCcCChhhc
Confidence            456555444578999999999999    8889999999999       999999999999999999999998652     


Q ss_pred             Hhh-ccceEEecCCCCCCCCCCHHHHHHHHHHhcCC---CCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHH
Q psy860           79 FQY-LSGIGYCPQFNGINEHLTAQEMLECFSALRGI---PGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTA  153 (178)
Q Consensus        79 ~~~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IA  153 (178)
                      .++ ++.||||||++.+++.+||+||+.++......   +..+..+++.++++.++|.+ .++++|.+|||||||||+||
T Consensus        78 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIA  157 (230)
T d1l2ta_          78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA  157 (230)
T ss_dssp             HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             chhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHH
Confidence            233 35799999999999999999999987765433   33344557888999999975 68999999999999999999


Q ss_pred             HHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          154 MALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       154 raL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |||+++|++|||||||++|||.++
T Consensus       158 raL~~~P~lLllDEPTs~LD~~~~  181 (230)
T d1l2ta_         158 RALANNPPIILADQPTGALDSKTG  181 (230)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHH
T ss_pred             hhhhcCCCEEEecCCccccCHHHH
Confidence            999999999999999999999764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=3.2e-48  Score=303.79  Aligned_cols=150  Identities=15%  Similarity=0.127  Sum_probs=139.8

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      .+|+||||+|++||    +.+|+||||||||       |+++++.|+.+|++|+|.++|+++.+....+++||||||++.
T Consensus        14 ~aL~~vs~~i~~Ge----~~~liGpsGaGKS-------Tll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~   82 (229)
T d3d31a2          14 FSLDNLSLKVESGE----YFVILGPTGAGKT-------LFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS   82 (229)
T ss_dssp             CEEEEEEEEECTTC----EEEEECCCTHHHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred             EEEeeeEEEECCCC----EEEEECCCCCcHH-------HHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccc
Confidence            48999999999999    8889999999999       999999999999999999999999877666788999999999


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN  173 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD  173 (178)
                      +|+++||+||+.++....+..   ..+++.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus        83 l~~~~tV~enl~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD  159 (229)
T d3d31a2          83 LFPHMNVKKNLEFGMRMKKIK---DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD  159 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHHCCC---CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred             cCccccHHHHHHHHHhhcccc---HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCC
Confidence            999999999999988776643   35689999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy860          174 LYNT  177 (178)
Q Consensus       174 ~~~~  177 (178)
                      |.++
T Consensus       160 ~~~~  163 (229)
T d3d31a2         160 PRTQ  163 (229)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.4e-46  Score=296.00  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=137.5

Q ss_pred             hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccce
Q psy860            6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGI   85 (178)
Q Consensus         6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~i   85 (178)
                      +.+..|...+  ||||++. +|    +.+|+||||||||       |++++++|+.+|++|+|.++|+++.+....+++|
T Consensus         7 ~~k~~g~~~~--~vs~~~~-~e----~~~liGpnGaGKS-------Tll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~i   72 (240)
T d2onka1           7 AEKRLGNFRL--NVDFEMG-RD----YCVLLGPTGAGKS-------VFLELIAGIVKPDRGEVRLNGADITPLPPERRGI   72 (240)
T ss_dssp             EEEEETTEEE--EEEEEEC-SS----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCC
T ss_pred             EEEEECCEEE--EEEEEeC-CE----EEEEECCCCChHH-------HHHHHHHcCCCCCceEEEECCEECCcCCHHHcCc
Confidence            3455555443  7999986 57    7889999999999       9999999999999999999999998877778899


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860           86 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ  165 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll  165 (178)
                      |||||++.+++++||+||+.++.  +..++.+.++++.++++.++|.+..++++.+|||||||||+|||||+++|++|+|
T Consensus        73 g~v~Q~~~l~~~ltV~enl~~~l--~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illl  150 (240)
T d2onka1          73 GFVPQDYALFPHLSVYRNIAYGL--RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL  150 (240)
T ss_dssp             BCCCSSCCCCTTSCHHHHHHTTC--TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred             eeeccchhhcccchhhHhhhhhh--cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEe
Confidence            99999999999999999998753  3334445567899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCC
Q psy860          166 KLPFSSQNLYNT  177 (178)
Q Consensus       166 DEPt~gLD~~~~  177 (178)
                      ||||+||||.++
T Consensus       151 DEPts~LD~~~~  162 (240)
T d2onka1         151 DEPLSAVDLKTK  162 (240)
T ss_dssp             ESTTSSCCHHHH
T ss_pred             cCccccCCHHHH
Confidence            999999999754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=8.5e-46  Score=295.31  Aligned_cols=158  Identities=16%  Similarity=0.113  Sum_probs=140.0

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----------
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----------   77 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----------   77 (178)
                      .+|..+||+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++..           
T Consensus        11 ~yg~~~al~~vs~~i~~GE----i~~iiG~sGsGKS-------TLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   79 (258)
T d1b0ua_          11 RYGGHEVLKGVSLQARAGD----VISIIGSSGSGKS-------TFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   79 (258)
T ss_dssp             EETTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             EECCEEEEcceeeEEcCCC----EEEEECCCCCcHH-------HHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence            3466789999999999999    8889999999999       99999999999999999999998742           


Q ss_pred             ----HHhhccceEEecCCCCCCCCCCHHHHHHHHH-HhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHH
Q psy860           78 ----LFQYLSGIGYCPQFNGINEHLTAQEMLECFS-ALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLS  151 (178)
Q Consensus        78 ----~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~  151 (178)
                          ....+++||||||++.+++.+||.||+.++. ...+.+..+.++++.++++.+++.+ ..+++|.+|||||||||+
T Consensus        80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~  159 (258)
T d1b0ua_          80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS  159 (258)
T ss_dssp             CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred             cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHH
Confidence                1345678999999999999999999999864 4455555667778999999999986 457889999999999999


Q ss_pred             HHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          152 TAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       152 IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |||||+.+|++|||||||+||||.++
T Consensus       160 iAraL~~~P~llilDEPT~gLD~~~~  185 (258)
T d1b0ua_         160 IARALAMEPDVLLFDEPTSALDPELV  185 (258)
T ss_dssp             HHHHHHTCCSEEEEESTTTTSCHHHH
T ss_pred             HHHHHhcCCCEEEeccccccCCHHHH
Confidence            99999999999999999999999753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-45  Score=291.21  Aligned_cols=159  Identities=19%  Similarity=0.206  Sum_probs=146.3

Q ss_pred             hccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceE
Q psy860            8 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIG   86 (178)
Q Consensus         8 ~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig   86 (178)
                      +.+|..+||+||||+|++||    +.+|+|+||+|||       ||++++.|+.+|++|++.++|+++.+ ..+.++.+|
T Consensus        10 k~yg~~~vl~~vs~~v~~Ge----i~glvG~nGaGKS-------TLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~   78 (238)
T d1vpla_          10 KRIGKKEILKGISFEIEEGE----IFGLIGPNGAGKT-------TTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS   78 (238)
T ss_dssp             EEETTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred             EEECCEEEEccceeEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEe
Confidence            45577889999999999999    7789999999999       99999999999999999999998755 456788999


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860           87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK  166 (178)
Q Consensus        87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD  166 (178)
                      ||||.+.+++++|+.||+.++..+++.+..+..+.++++++.+++.+..++++++|||||||||+|||||+++|++||||
T Consensus        79 ~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD  158 (238)
T d1vpla_          79 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD  158 (238)
T ss_dssp             EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            99999999999999999999888877766667778899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy860          167 LPFSSQNLYNT  177 (178)
Q Consensus       167 EPt~gLD~~~~  177 (178)
                      |||+||||.++
T Consensus       159 EPt~gLD~~~~  169 (238)
T d1vpla_         159 EPTSGLDVLNA  169 (238)
T ss_dssp             STTTTCCHHHH
T ss_pred             CCCCCCCHHHH
Confidence            99999999753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=4.5e-45  Score=288.47  Aligned_cols=157  Identities=18%  Similarity=0.136  Sum_probs=135.9

Q ss_pred             ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--H-hhccce
Q psy860            9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--F-QYLSGI   85 (178)
Q Consensus         9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~-~~~~~i   85 (178)
                      .+|...||+||||+|++||    +.+|+||||||||       |+++++.|+.+|++|+|.++|+++...  . ..|.++
T Consensus        15 ~yg~~~al~~vs~~i~~Ge----i~~liGpnGaGKS-------Tl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi   83 (240)
T d1ji0a_          15 YYGAIHAIKGIDLKVPRGQ----IVTLIGANGAGKT-------TTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EETTEEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             EECCEEEEeeeeEEECCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence            4466789999999999999    8889999999999       999999999999999999999998653  2 235679


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860           86 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF  164 (178)
Q Consensus        86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll  164 (178)
                      +|+||++.+|+++||+||+.++.... ......++.++++++.+ ++.+..++++++|||||||||+|||||+++|++||
T Consensus        84 ~~~~q~~~l~~~ltv~en~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLl  162 (240)
T d1ji0a_          84 ALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLM  162 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             cccCcccccCCcccHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEee
Confidence            99999999999999999987655333 23344455677777777 68889999999999999999999999999999999


Q ss_pred             eeCCCCCCCCCCC
Q psy860          165 QKLPFSSQNLYNT  177 (178)
Q Consensus       165 lDEPt~gLD~~~~  177 (178)
                      |||||+||||.++
T Consensus       163 lDEPt~gLD~~~~  175 (240)
T d1ji0a_         163 MDEPSLGLAPILV  175 (240)
T ss_dssp             EECTTTTCCHHHH
T ss_pred             ecCCCcCCCHHHH
Confidence            9999999999754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.2e-44  Score=288.30  Aligned_cols=159  Identities=16%  Similarity=0.110  Sum_probs=136.7

Q ss_pred             hccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHh-hccc
Q psy860            8 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQ-YLSG   84 (178)
Q Consensus         8 ~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~-~~~~   84 (178)
                      +.+|..+||+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|+++..  ..+ .+.+
T Consensus        12 k~yg~~~aL~~vs~~v~~Ge----i~~liG~nGaGKS-------TLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g   80 (254)
T d1g6ha_          12 KYFGEFKALDGVSISVNKGD----VTLIIGPNGSGKS-------TLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   80 (254)
T ss_dssp             EEETTEEEEEEECCEEETTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             EEECCeEEEcceEEEECCCC----EEEEECCCCCcHH-------HHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence            34566789999999999999    8889999999999       99999999999999999999999864  333 3567


Q ss_pred             eEEecCCCCCCCCCCHHHHHHHHHHh------------cCC-CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHH
Q psy860           85 IGYCPQFNGINEHLTAQEMLECFSAL------------RGI-PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLS  151 (178)
Q Consensus        85 ig~v~Q~~~l~~~ltv~e~l~~~~~~------------~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~  151 (178)
                      |+|+||++.+++++||+||+.+....            ... ...+..+++.++++.+++.+..++++++|||||||||+
T Consensus        81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~  160 (254)
T d1g6ha_          81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE  160 (254)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHH
Confidence            99999999999999999999763211            111 22233457888999999999999999999999999999


Q ss_pred             HHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860          152 TAMALIGDRDDGFQKLPFSSQNLYNT  177 (178)
Q Consensus       152 IAraL~~~P~~lllDEPt~gLD~~~~  177 (178)
                      |||||+++|++|||||||+||||.++
T Consensus       161 iAraL~~~P~llilDEPt~gLD~~~~  186 (254)
T d1g6ha_         161 IGRALMTNPKMIVMDEPIAGVAPGLA  186 (254)
T ss_dssp             HHHHHHTCCSEEEEESTTTTCCHHHH
T ss_pred             HHHHHHhCcCchhhcCCcccCCHHHH
Confidence            99999999999999999999999653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=7e-42  Score=270.40  Aligned_cols=155  Identities=18%  Similarity=0.158  Sum_probs=127.1

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~   81 (178)
                      |+|+++.   ++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++.+.  .++
T Consensus         9 f~Y~~~~---~vL~~isl~i~~Ge----~vaivG~sGsGKS-------TLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~   74 (242)
T d1mv5a_           9 FAYDDSE---QILRDISFEAQPNS----IIAFAGPSGGGKS-------TIFSLLERFYQPTAGEITIDGQPIDNISLENW   74 (242)
T ss_dssp             ECSSSSS---CSEEEEEEEECTTE----EEEEECCTTSSHH-------HHHHHHTTSSCCSBSCEEETTEESTTTSCSCC
T ss_pred             EECCCCC---ceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHHhhCCCCCEEEECCEEeccccHHHH
Confidence            7786543   79999999999999    8999999999999       999999999999999999999998764  567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------cc----CcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RH----RVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~----~~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.+|+. |++||+.+.     .......+.+.+.++..++.+.       .+    ....+|||||||||
T Consensus        75 r~~i~~v~Q~~~lf~~-ti~eNi~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv  148 (242)
T d1mv5a_          75 RSQIGFVSQDSAIMAG-TIRENLTYG-----LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL  148 (242)
T ss_dssp             TTTCCEECCSSCCCCE-EHHHHTTSC-----TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred             HhheEEEccccccCCc-chhhheecc-----cccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHH
Confidence            8899999999998766 999998642     1222234445555665554322       22    23457999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYNTT  178 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~~~  178 (178)
                      +|||||+.+|++||||||||+||+.+++
T Consensus       149 ~iARal~~~p~ililDEpts~LD~~~~~  176 (242)
T d1mv5a_         149 AIARAFLRNPKILMLDEATASLDSESES  176 (242)
T ss_dssp             HHHHHHHHCCSEEEEECCSCSSCSSSCC
T ss_pred             HHHHHHhcCCCEEEecCCccccCHHHHH
Confidence            9999999999999999999999998763

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=8.8e-40  Score=251.71  Aligned_cols=147  Identities=14%  Similarity=0.152  Sum_probs=131.0

Q ss_pred             ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860           14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG   93 (178)
Q Consensus        14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~   93 (178)
                      ++|+||||+|++||    +.+|+|+||||||       ||++++.|+.+|++|+|.++|.++..   .+.+++|+||+..
T Consensus        15 ~vl~~is~~i~~Ge----i~~l~G~NGsGKS-------TLl~~i~gl~~p~~G~I~~~g~~i~~---~~~~i~~~~~~~~   80 (200)
T d1sgwa_          15 PVLERITMTIEKGN----VVNFHGPNGIGKT-------TLLKTISTYLKPLKGEIIYNGVPITK---VKGKIFFLPEEII   80 (200)
T ss_dssp             EEEEEEEEEEETTC----CEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEEGGG---GGGGEEEECSSCC
T ss_pred             eEEeceEEEEcCCC----EEEEECCCCChHH-------HHHHHHhcccccCCCEEEECCEehhH---hcCcEEEEeeccc
Confidence            68999999999999    8889999999999       99999999999999999999987754   5668999999999


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860           94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN  173 (178)
Q Consensus        94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD  173 (178)
                      ++..+|+.+++.+....++..  ..++.+.+.++.+++.+. ++++++|||||||||+|||||+.+|+++||||||+|||
T Consensus        81 ~~~~~t~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD  157 (200)
T d1sgwa_          81 VPRKISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID  157 (200)
T ss_dssp             CCTTSBHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred             CCCCcCHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCccc-ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccC
Confidence            999999999998877776543  234567788999988653 56789999999999999999999999999999999999


Q ss_pred             CCCC
Q psy860          174 LYNT  177 (178)
Q Consensus       174 ~~~~  177 (178)
                      +.++
T Consensus       158 ~~~~  161 (200)
T d1sgwa_         158 EDSK  161 (200)
T ss_dssp             TTTH
T ss_pred             HHHH
Confidence            9875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-41  Score=266.97  Aligned_cols=155  Identities=17%  Similarity=0.059  Sum_probs=124.7

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |+|+... ...+|+||||+|++||    +.+|+|+||||||       ||++.+.|+.+|++|+|.++|.++..  ...+
T Consensus        19 f~Y~~~~-~~~vL~~isl~i~~Ge----~vaivG~sGsGKS-------TLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~   86 (251)
T d1jj7a_          19 FAYPNRP-DVLVLQGLTFTLRPGE----VTALVGPNGSGKS-------TVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL   86 (251)
T ss_dssp             ECCTTST-TCCSEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred             EECCCCC-CCEeEeceEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence            6775432 2469999999999999    8999999999999       99999999999999999999999875  4567


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHH---------HHHHHc--CCCccccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIID---------YWIDLL--GLTEYRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~---------~~l~~~--~L~~~~~~~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.+| +.|++||+.+..     ..........         +.++.+  ++....++.+.+|||||||||
T Consensus        87 r~~i~~v~Q~~~lf-~~tv~eni~~g~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRv  160 (251)
T d1jj7a_          87 HRQVAAVGQEPQVF-GRSLQENIAYGL-----TQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAV  160 (251)
T ss_dssp             HHHEEEECSSCCCC-SSBHHHHHHCSC-----SSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHH
T ss_pred             HHHhhhcccccccc-Ccchhhhhhhhh-----cccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEE
Confidence            88999999999887 469999997632     1111111111         223333  334455677789999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|+++|||||||+||+.+
T Consensus       161 aiARal~~~p~ililDEpTs~LD~~~  186 (251)
T d1jj7a_         161 ALARALIRKPCVLILDDATSALDANS  186 (251)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred             EEeeccccCCcEEEecCcCcccChhh
Confidence            99999999999999999999999865

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-40  Score=262.27  Aligned_cols=153  Identities=18%  Similarity=0.135  Sum_probs=125.0

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |.|+.+-  .++|+||||+|++||    +.+|+|+||||||       ||++.+.|+.+|++|+|.++|.++..  ..++
T Consensus         9 f~Y~~~~--~~vL~~isl~i~~Ge----~vaIvG~sGsGKS-------TLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~l   75 (241)
T d2pmka1           9 FRYKPDS--PVILDNINLSIKQGE----VIGIVGRSGSGKS-------TLTKLIQRFYIPENGQVLIDGHDLALADPNWL   75 (241)
T ss_dssp             EESSTTS--CEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred             EEeCCCC--cceEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhcCCCCCCEEEECCEEecccchhhh
Confidence            6775432  469999999999999    8999999999999       99999999999999999999999875  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-----------ccccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-----------EYRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.+| +.|++||+.++.     +. ...+.+.++++..++.           ......+.+|||||||||
T Consensus        76 r~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRv  148 (241)
T d2pmka1          76 RRQVGVVLQDNVLL-NRSIIDNISLAN-----PG-MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI  148 (241)
T ss_dssp             HHHEEEECSSCCCT-TSBHHHHHCTTS-----TT-CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHH
T ss_pred             hceEEEEecccccC-CccccccccccC-----cc-ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHH
Confidence            88999999999876 569999997632     11 1133344444444332           233455689999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++||||||||+||+.+
T Consensus       149 alARal~~~p~ililDEpts~LD~~~  174 (241)
T d2pmka1         149 AIARALVNNPKILIFDEATSALDYES  174 (241)
T ss_dssp             HHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred             hhhhhhhcccchhhhhCCccccCHHH
Confidence            99999999999999999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.9e-40  Score=261.90  Aligned_cols=153  Identities=21%  Similarity=0.173  Sum_probs=127.7

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |+|+++-  .++|+||||+|++||    +.+|+|+||||||       ||++.+.|+.+|++|.|.++|.++.+  ..++
T Consensus        24 f~Y~~~~--~~vL~~isl~i~~Ge----~vaivG~sGsGKS-------TLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~l   90 (255)
T d2hyda1          24 FQYNDNE--APILKDINLSIEKGE----TVAFVGMSGGGKS-------TLINLIPRFYDVTSGQILIDGHNIKDFLTGSL   90 (255)
T ss_dssp             ECSCSSS--CCSEEEEEEEECTTC----EEEEECSTTSSHH-------HHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred             EEeCCCC--CcceeceEEEEcCCC----EEEEECCCCCcHH-------HHHHHHHhcCCccccccccCCEEcccCCHHHh
Confidence            6675443  479999999999999    9999999999999       99999999999999999999999875  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.+| +.|++||+.++.     + ....+++.++++..++.+.           ......+|||||||||
T Consensus        91 r~~i~~v~Q~~~lf-~~Ti~eNi~~g~-----~-~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi  163 (255)
T d2hyda1          91 RNQIGLVQQDNILF-SDTVKENILLGR-----P-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL  163 (255)
T ss_dssp             HHTEEEECSSCCCC-SSBHHHHHGGGC-----S-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH
T ss_pred             hheeeeeeccccCC-CCCHHHHHhccC-----c-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHH
Confidence            89999999999876 569999997641     1 1224556677777766432           2234567999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++||||||||+||+.+
T Consensus       164 ~iARal~~~p~ililDEpts~LD~~t  189 (255)
T d2hyda1         164 SIARIFLNNPPILILDEATSALDLES  189 (255)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHH
Confidence            99999999999999999999999875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.3e-39  Score=258.74  Aligned_cols=154  Identities=17%  Similarity=0.119  Sum_probs=125.6

Q ss_pred             hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860            4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY   81 (178)
Q Consensus         4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~   81 (178)
                      |+|+..-  .++|+||||+|++||    +.+|+|+||||||       ||++.+.|+.+|++|+|.++|.++..  ...+
T Consensus        21 f~Y~~~~--~~~L~~isl~i~~Ge----~iaivG~sGsGKS-------TLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~   87 (253)
T d3b60a1          21 FTYPGRE--VPALRNINLKIPAGK----TVALVGRSGSGKS-------TIASLITRFYDIDEGHILMDGHDLREYTLASL   87 (253)
T ss_dssp             ECSSSSS--CCSEEEEEEEECTTC----EEEEEECTTSSHH-------HHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred             EEeCCCC--CceeeceEEEEcCCC----EEEEECCCCChHH-------HHHHHHhcccCCCccEEEECCcccchhhhhhh
Confidence            6675432  479999999999999    8999999999999       99999999999999999999999875  4678


Q ss_pred             ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-----------CCccccCcCCCCChHHHHHH
Q psy860           82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-----------LTEYRHRVSGRYSGGNKRKL  150 (178)
Q Consensus        82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv  150 (178)
                      |+.|+||||++.++ ..|+++|+.+..     ......+++.++++..+           +.....+.+.+|||||||||
T Consensus        88 r~~i~~v~Q~~~l~-~~ti~~n~~~~~-----~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRv  161 (253)
T d3b60a1          88 RNQVALVSQNVHLF-NDTVANNIAYAR-----TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI  161 (253)
T ss_dssp             HHTEEEECSSCCCC-SSBHHHHHHTTT-----TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred             hheEEEEeeccccC-CcchhhhhhhcC-----cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHH
Confidence            88999999999876 458999987531     11222344444444443           33344566788999999999


Q ss_pred             HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860          151 STAMALIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       151 ~IAraL~~~P~~lllDEPt~gLD~~~  176 (178)
                      +|||||+.+|++||||||||+||+.+
T Consensus       162 aiARal~~~p~ililDEpts~LD~~~  187 (253)
T d3b60a1         162 AIARALLRDSPILILDEATSALDTES  187 (253)
T ss_dssp             HHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred             HHHHHHhcCCCEEEeccccccCCHHH
Confidence            99999999999999999999999865

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-36  Score=238.55  Aligned_cols=147  Identities=13%  Similarity=0.101  Sum_probs=127.6

Q ss_pred             cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860           13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ   90 (178)
Q Consensus        13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q   90 (178)
                      ..+|++|||+|++||    +.+|+|+||||||       ||++++.|+. |++|+|.++|+++..  ..+++...+|++|
T Consensus        12 ~~~l~~isl~I~~Ge----i~~iiG~nGaGKS-------TLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~   79 (231)
T d1l7vc_          12 STRLGPLSGEVRAGE----ILHLVGPNGAGKS-------TLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQ   79 (231)
T ss_dssp             TTTSCSEEEEEETTC----EEECBCCTTSSHH-------HHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECS
T ss_pred             CceecCEEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeec
Confidence            458999999999999    8889999999999       9999999976 578999999998765  3456667899999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC-------CCCeE
Q psy860           91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG-------DRDDG  163 (178)
Q Consensus        91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~-------~P~~l  163 (178)
                      ........++++++.+..     ......+.++++++.+++.+..++++.+|||||||||+|||||++       +|++|
T Consensus        80 ~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~ll  154 (231)
T d1l7vc_          80 QQTPPFATPVWHYLTLHQ-----HDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL  154 (231)
T ss_dssp             CCCCCSSCBHHHHHHHHC-----SCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred             cccCCccccHHHHhhhcc-----chhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEE
Confidence            987777788988876532     223446678899999999999999999999999999999999997       77999


Q ss_pred             EeeCCCCCCCCCC
Q psy860          164 FQKLPFSSQNLYN  176 (178)
Q Consensus       164 llDEPt~gLD~~~  176 (178)
                      ||||||+||||.+
T Consensus       155 llDEPt~gLD~~~  167 (231)
T d1l7vc_         155 LLDEPMNSLDVAQ  167 (231)
T ss_dssp             EESSCSTTCCHHH
T ss_pred             EEcCCCCCCCHHH
Confidence            9999999999865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.9e-37  Score=246.01  Aligned_cols=135  Identities=19%  Similarity=0.159  Sum_probs=110.3

Q ss_pred             ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860           12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF   91 (178)
Q Consensus        12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~   91 (178)
                      ..+||+||||+|++||    +.+|+|+||||||       ||++.++|+.+|++|.|.++|           +++|+||+
T Consensus        48 g~pvL~~isl~i~~Ge----~vaivG~nGsGKS-------TLl~~i~Gl~~p~~G~I~~~g-----------~i~~v~Q~  105 (281)
T d1r0wa_          48 GNPVLKNINLNIEKGE----MLAITGSTGSGKT-------SLLMLILGELEASEGIIKHSG-----------RVSFCSQF  105 (281)
T ss_dssp             TCEEEEEEEEEECTTC----EEEEEESTTSSHH-------HHHHHHHTSSCCSEEEEECCS-----------CEEEECSS
T ss_pred             CCeEEeCeEEEEcCCC----EEEEECCCCChHH-------HHHHHHhCCCcCCCcEEEECC-----------EEEEEecc
Confidence            4689999999999999    8899999999999       999999999999999998887           49999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-------CCc----cccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860           92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-------LTE----YRHRVSGRYSGGNKRKLSTAMALIGDR  160 (178)
Q Consensus        92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~----~~~~~~~~LSgGqkQRv~IAraL~~~P  160 (178)
                      +.+++ .|++||+.+..     .  .......++++..+       +.+    ...+...+|||||||||+|||||+++|
T Consensus       106 ~~l~~-~tv~eni~~~~-----~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p  177 (281)
T d1r0wa_         106 SWIMP-GTIKENIIFGV-----S--YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA  177 (281)
T ss_dssp             CCCCS-EEHHHHHTTTS-----C--CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred             ccccC-ceeeccccccc-----c--ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence            98876 49999997532     1  11223334444333       222    233456679999999999999999999


Q ss_pred             CeEEeeCCCCCCCCCC
Q psy860          161 DDGFQKLPFSSQNLYN  176 (178)
Q Consensus       161 ~~lllDEPt~gLD~~~  176 (178)
                      ++||||||||+||+.+
T Consensus       178 ~illLDEPts~LD~~~  193 (281)
T d1r0wa_         178 DLYLLDSPFGYLDVFT  193 (281)
T ss_dssp             SEEEEESCCCSSCHHH
T ss_pred             cchhhcCccccCCHHH
Confidence            9999999999999864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.87  E-value=1.1e-11  Score=90.33  Aligned_cols=105  Identities=10%  Similarity=-0.213  Sum_probs=63.3

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC--CC--CCCCCCCHHHHHHHHH
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ--FN--GINEHLTAQEMLECFS  108 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q--~~--~l~~~ltv~e~l~~~~  108 (178)
                      .+|.|+||+|||       ||++.+++..+++.|.+.+.+.......   +..++...  ..  ......+..       
T Consensus         3 i~I~G~~G~GKS-------TLl~~i~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------   65 (178)
T d1ye8a1           3 IIITGEPGVGKT-------TLVKKIVERLGKRAIGFWTEEVRDPETK---KRTGFRIITTEGKKKIFSSKFFT-------   65 (178)
T ss_dssp             EEEECCTTSSHH-------HHHHHHHHHHGGGEEEEEEEEEC---------CCEEEEEETTCCEEEEEETTCC-------
T ss_pred             EEEECCCCcHHH-------HHHHHHHhcCCCCcceEEECCcchHHHH---HhhhhhhhhhhHHHHHHhhhhhh-------
Confidence            358899999999       9999999999999999887765432221   11221111  00  000000000       


Q ss_pred             HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860          109 ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS  171 (178)
Q Consensus       109 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g  171 (178)
                          .  ....       ...    ..+....++|+|++++.++++++..+|+++++|||...
T Consensus        66 ----~--~~~~-------~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~  111 (178)
T d1ye8a1          66 ----S--KKLV-------GSY----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM  111 (178)
T ss_dssp             ----C--SSEE-------TTE----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT
T ss_pred             ----h--hhhh-------hhh----hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc
Confidence                0  0000       000    11112235889999999999999999999999998544

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=2.7e-06  Score=68.42  Aligned_cols=39  Identities=15%  Similarity=-0.035  Sum_probs=31.3

Q ss_pred             cCCCCChHHHHHHHHHHH----HhCCCCeEEeeCCCCCCCCCC
Q psy860          138 VSGRYSGGNKRKLSTAMA----LIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       138 ~~~~LSgGqkQRv~IAra----L~~~P~~lllDEPt~gLD~~~  176 (178)
                      ....+|||||.++++|..    ...++.+++||||+++||+.+
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~  371 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITN  371 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHH
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHH
Confidence            346789999999877653    356777999999999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.59  E-value=0.0044  Score=47.07  Aligned_cols=39  Identities=23%  Similarity=0.060  Sum_probs=32.2

Q ss_pred             cCCCCChHHHHHHHHHHH----HhCCCCeEEeeCCCCCCCCCC
Q psy860          138 VSGRYSGGNKRKLSTAMA----LIGDRDDGFQKLPFSSQNLYN  176 (178)
Q Consensus       138 ~~~~LSgGqkQRv~IAra----L~~~P~~lllDEPt~gLD~~~  176 (178)
                      ....+|+|+|+...++..    ....|.+++.|||-++|+|.+
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~  258 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYN  258 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHH
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHH
Confidence            466899999998877664    456779999999999999875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.0053  Score=42.79  Aligned_cols=28  Identities=18%  Similarity=0.189  Sum_probs=20.4

Q ss_pred             cccchhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860           15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPII   47 (178)
Q Consensus        15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~   47 (178)
                      .+++.++++.+|     +..|+|+||+|||+++
T Consensus        14 ~~~~~~i~f~~~-----~tvi~G~NGsGKStil   41 (222)
T d1qhla_          14 GFFARTFDLDEL-----VTTLSGGNGAGKSTTM   41 (222)
T ss_dssp             TEEEEEECHHHH-----HHHHHSCCSHHHHHHH
T ss_pred             CEeeEEEEcCCC-----eEEEECCCCCCHHHHH
Confidence            345666666554     6779999999999444

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=90.35  E-value=0.27  Score=35.68  Aligned_cols=15  Identities=20%  Similarity=0.308  Sum_probs=8.2

Q ss_pred             hhhhCCCCCCccchH
Q psy860           33 SALRGIPGVKSGPII   47 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~   47 (178)
                      ..++||+|+|||+..
T Consensus        15 i~lvGptGvGKTTTi   29 (211)
T d1j8yf2          15 IMLVGVQGTGKATTA   29 (211)
T ss_dssp             EEEECSCCC----HH
T ss_pred             EEEECCCCCCHHHHH
Confidence            457899999999433

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.28  E-value=0.072  Score=36.16  Aligned_cols=28  Identities=25%  Similarity=0.246  Sum_probs=20.8

Q ss_pred             hhhCCCCCCccchHHHHHHHhhhhhccCCcccccc
Q psy860           34 ALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN   68 (178)
Q Consensus        34 ~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i   68 (178)
                      .|.|++|+|||       |+++.++.........+
T Consensus         5 ~ItG~~GtGKT-------tl~~~i~~~l~~~~~~v   32 (189)
T d2i3ba1           5 FLTGPPGVGKT-------TLIHKASEVLKSSGVPV   32 (189)
T ss_dssp             EEESCCSSCHH-------HHHHHHHHHHHHTTCCC
T ss_pred             EEECCCCCcHH-------HHHHHHHHHHHHCCCEE
Confidence            47899999999       88888777655444443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.20  E-value=0.093  Score=39.28  Aligned_cols=14  Identities=21%  Similarity=0.287  Sum_probs=12.4

Q ss_pred             hhhhhCCCCCCccc
Q psy860           32 FSALRGIPGVKSGP   45 (178)
Q Consensus        32 ~~~i~G~~g~gk~~   45 (178)
                      +..|+|+||||||+
T Consensus        26 lnvlvG~NgsGKS~   39 (308)
T d1e69a_          26 VTAIVGPNGSGKSN   39 (308)
T ss_dssp             EEEEECCTTTCSTH
T ss_pred             eEEEECCCCCcHHH
Confidence            66799999999993

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.24  E-value=0.09  Score=36.64  Aligned_cols=16  Identities=19%  Similarity=0.356  Sum_probs=12.7

Q ss_pred             hhhhhCCCCCCccchH
Q psy860           32 FSALRGIPGVKSGPII   47 (178)
Q Consensus        32 ~~~i~G~~g~gk~~~~   47 (178)
                      +..|.||+||||+++.
T Consensus         4 iivl~GpsG~GK~tl~   19 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVV   19 (182)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4568999999999444

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=82.82  E-value=0.14  Score=34.48  Aligned_cols=21  Identities=24%  Similarity=0.191  Sum_probs=16.9

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRF   60 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~   60 (178)
                      .+|.|++|||||       ||+..++.-
T Consensus         5 i~itG~~GSGKT-------TL~~~L~~~   25 (170)
T d1np6a_           5 LAFAAWSGTGKT-------TLLKKLIPA   25 (170)
T ss_dssp             EEEECCTTSCHH-------HHHHHHHHH
T ss_pred             EEEEcCCCCCHH-------HHHHHHHHH
Confidence            458899999999       887777643

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=81.49  E-value=0.085  Score=37.36  Aligned_cols=32  Identities=13%  Similarity=0.334  Sum_probs=19.9

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN   68 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i   68 (178)
                      .+|.||.||||||..    .++..-.++..-+.|.+
T Consensus         6 I~I~GppGSGKgT~a----k~La~~~gl~~iStGdL   37 (225)
T d1ckea_           6 ITIDGPSGAGKGTLC----KAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEECCTTSSHHHHH----HHHHHHHTCEEEEHHHH
T ss_pred             EEEECCCCCCHHHHH----HHHHHHhCCcEECHHHH
Confidence            468899999999555    33333335444455554

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.27  E-value=0.11  Score=37.01  Aligned_cols=32  Identities=9%  Similarity=0.231  Sum_probs=19.2

Q ss_pred             hhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc
Q psy860           33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN   68 (178)
Q Consensus        33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i   68 (178)
                      .+|.||.||||||+.    .++..-.++..-+.|.+
T Consensus         6 IaIdGp~GsGKgT~a----k~La~~lg~~~istGdl   37 (223)
T d1q3ta_           6 IAIDGPASSGKSTVA----KIIAKDFGFTYLDTGAM   37 (223)
T ss_dssp             EEEECSSCSSHHHHH----HHHHHHHCCEEEEHHHH
T ss_pred             EEEECCCCCCHHHHH----HHHHHHhCCcEECHHHH
Confidence            467799999999555    33333334433444443