Psyllid ID: psy8630

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECFYYFSFLLVSILVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPSR
cHHHHHccccEEEccccccccccccEEEEEEcccHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHccccccccccccccccccccccccc
cHHHHHcccEEEEcHHcccccccccEEEEEEcccHHHHHHHHHHHccccccccEEEEEEEcccccccHccccccHHccHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHcccccHcccccccccccccccccccc
MHEISAEGMTIVEDIHkareplpsleavyLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECFYYFSFLLVSILVLRMANMERIAEQIATLCATlgeypsvryrsdfdRNVELAQLVQQKLDaykadeptmgegVEKARSQLLILdrgfdcvspLLHELTLQAMAYDLLNIENDQVTKNLKKFidskrmpqgdkqTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLCRVEQdlatgedaegerikdhMRNIVpilldqnvsnydKMRIIILYILNkngisednLNKLIThaqiqppeKQAIVNLANlglnsvidgnrkklyqiprkerisectyqmsrwTPIVKDIMEDAIEdkldqkhfpflaghvtssgyhapsr
MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECFYYFSFLLVSILVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVTKNLKkfidskrmpqgdkQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLCRVEQDLAtgedaegerikdhmrnivpilldqnvsnydKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLglnsvidgnrkklyqiprkerisectyqmsrWTPIVKDIMEDAIEDKLDQKHFPFlaghvtssgyhapsr
MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECFYYFSFLLVSILVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPSR
**************I*****PLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECFYYFSFLLVSILVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYK************ARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVTKNLKKF********************************KYSTHLHLAEDCMKAYQGYVDKLCRVEQDLATGE***GERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHV**********
MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECFYYFSFLLVSILVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLN**********************TYQMSRWTPIVKDIMEDAIEDKLDQKHFP****************
MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECFYYFSFLLVSILVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVT*********
*HEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECFYYFSFLLVSILVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVTKNLKKFIDSKRMP**DKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNS******************SECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLA*************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECFYYFSFLLVSILVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
Q07327597 Protein ROP OS=Drosophila yes N/A 0.982 0.641 0.597 1e-157
Q6R748594 Syntaxin-binding protein yes N/A 0.982 0.644 0.565 1e-138
P61765594 Syntaxin-binding protein yes N/A 0.982 0.644 0.565 1e-137
Q5R6D2594 Syntaxin-binding protein yes N/A 0.982 0.644 0.565 1e-137
O08599594 Syntaxin-binding protein yes N/A 0.982 0.644 0.565 1e-137
P61764594 Syntaxin-binding protein yes N/A 0.982 0.644 0.565 1e-137
P61763594 Syntaxin-binding protein yes N/A 0.982 0.644 0.565 1e-137
P34815673 Putative acetylcholine re no N/A 0.982 0.569 0.508 1e-121
Q28288593 Syntaxin-binding protein no N/A 0.984 0.647 0.473 1e-112
Q15833593 Syntaxin-binding protein no N/A 0.984 0.647 0.464 1e-110
>sp|Q07327|ROP_DROME Protein ROP OS=Drosophila melanogaster GN=Rop PE=2 SV=2 Back     alignment and function desciption
 Score =  555 bits (1429), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/472 (59%), Positives = 329/472 (69%), Gaps = 89/472 (18%)

Query: 1   MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
           MHEISAEG+T+VEDI+K REPLP+++A+YLITP ++SV+ L+ DF +  R MY+ AHV+F
Sbjct: 58  MHEISAEGITLVEDINKKREPLPTMDAIYLITPSDESVRGLIRDFENPARPMYRYAHVFF 117

Query: 61  TE----------------------------------------------CFYYFSFLLVSI 74
           TE                                              C Y  +F  +  
Sbjct: 118 TEVCPEELFNDLCKSCAAGKIKTLKEINIAFLPYECQVFSLDSPDTFQCLYSPAFASI-- 175

Query: 75  LVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGE 134
              R  ++ERIAEQIATLCATLGEYP+VRYRSD+DRN++LA  VQQKLDAYKAD+ TMGE
Sbjct: 176 ---RSKHIERIAEQIATLCATLGEYPNVRYRSDWDRNIDLAASVQQKLDAYKADDATMGE 232

Query: 135 GVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------- 175
           G EKARSQLLILDRGFDCVSPLLHELTLQAMAYDLL I ND                   
Sbjct: 233 GPEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLPIVNDVYRYTPGPNQPDKEVLLDE 292

Query: 176 ------------------QVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSK 217
                             QVT+NLKKF DSKRM   DK +MRDLSQMIKKMPQYQKELSK
Sbjct: 293 NDDLWVELRHEHIAVVSTQVTQNLKKFTDSKRMGSADKSSMRDLSQMIKKMPQYQKELSK 352

Query: 218 YSTHLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYD 277
           YSTHLHLAEDCMK+YQ YVDKLCRVEQDLA G DAEGE+IKDHMRNIVPILLD NVSNYD
Sbjct: 353 YSTHLHLAEDCMKSYQNYVDKLCRVEQDLAMGTDAEGEKIKDHMRNIVPILLDANVSNYD 412

Query: 278 KMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIP 337
           K+RII LY++ KNGISE+NL KL THAQ+ P ++  + NL+ LG+N + D +RKK Y +P
Sbjct: 413 KVRIIALYVMIKNGISEENLTKLFTHAQLSPKDQDMVRNLSCLGINVIAD-SRKKQYSVP 471

Query: 338 RKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPS 389
           RKER +E TYQMSRWTP++KDIMED IEDKLD +HFPFL G   ++ YHAP+
Sbjct: 472 RKERTTESTYQMSRWTPVIKDIMEDCIEDKLDLRHFPFLEGRAQNTNYHAPT 523
May be a component of one of the vesicle trafficking pathways. May interact functionally with Ras2 protein.
Drosophila melanogaster (taxid: 7227)
>sp|Q6R748|STXB1_CHICK Syntaxin-binding protein 1 OS=Gallus gallus GN=STXBP1 PE=2 SV=1 Back     alignment and function description
>sp|P61765|STXB1_RAT Syntaxin-binding protein 1 OS=Rattus norvegicus GN=Stxbp1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R6D2|STXB1_PONAB Syntaxin-binding protein 1 OS=Pongo abelii GN=STXBP1 PE=2 SV=1 Back     alignment and function description
>sp|O08599|STXB1_MOUSE Syntaxin-binding protein 1 OS=Mus musculus GN=Stxbp1 PE=1 SV=2 Back     alignment and function description
>sp|P61764|STXB1_HUMAN Syntaxin-binding protein 1 OS=Homo sapiens GN=STXBP1 PE=1 SV=1 Back     alignment and function description
>sp|P61763|STXB1_BOVIN Syntaxin-binding protein 1 OS=Bos taurus GN=STXBP1 PE=1 SV=1 Back     alignment and function description
>sp|P34815|UNC18_CAEEL Putative acetylcholine regulator unc-18 OS=Caenorhabditis elegans GN=unc-18 PE=2 SV=3 Back     alignment and function description
>sp|Q28288|STXB2_CANFA Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1 Back     alignment and function description
>sp|Q15833|STXB2_HUMAN Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
242020286 585 protein ROP, putative [Pediculus humanus 0.984 0.656 0.673 1e-179
156549961 591 PREDICTED: protein ROP-like isoform 1 [N 0.997 0.658 0.659 1e-174
345488366 591 PREDICTED: protein ROP-like isoform 2 [N 0.997 0.658 0.659 1e-174
307213344 573 Protein ROP [Harpegnathos saltator] 0.984 0.670 0.647 1e-172
380013711 585 PREDICTED: protein ROP-like isoform 1 [A 0.984 0.656 0.650 1e-171
328788642 585 PREDICTED: protein ROP isoform 1 [Apis m 0.984 0.656 0.650 1e-171
383859379 585 PREDICTED: protein ROP-like [Megachile r 0.984 0.656 0.650 1e-170
340721591 585 PREDICTED: protein ROP-like isoform 1 [B 0.984 0.656 0.644 1e-170
340721593 585 PREDICTED: protein ROP-like isoform 2 [B 0.984 0.656 0.644 1e-169
193636538 590 PREDICTED: protein ROP-like isoform 1 [A 0.989 0.654 0.648 1e-168
>gi|242020286|ref|XP_002430586.1| protein ROP, putative [Pediculus humanus corporis] gi|212515758|gb|EEB17848.1| protein ROP, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 318/472 (67%), Positives = 353/472 (74%), Gaps = 88/472 (18%)

Query: 1   MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
           MHEISAEG+T+VEDI+K REPL ++EA+YLITPCEKSV +L+NDF S  R+MY+AAHVYF
Sbjct: 47  MHEISAEGITLVEDINKKREPLSTMEAIYLITPCEKSVHSLINDFASPNRSMYRAAHVYF 106

Query: 61  TE----------------------------------------------CFYYFSFLLVSI 74
           TE                                              CFY  SF     
Sbjct: 107 TEVCPEELFNELCKSCAAKKIKTLKEINIAFLPYESQVFSLDSPETFQCFYNPSFAKS-- 164

Query: 75  LVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGE 134
              R+ANMERIAEQIATLCATLGEYPSVRYR D+D+NVELAQL+QQKLDAYKADEPTMGE
Sbjct: 165 ---RIANMERIAEQIATLCATLGEYPSVRYRFDYDKNVELAQLIQQKLDAYKADEPTMGE 221

Query: 135 GVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------- 175
             EKARSQLLILDRGFDCVSPLLHELTLQAMAYDLL I+ND                   
Sbjct: 222 SPEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLPIDNDVYKYEASAGAPEKEVLLDE 281

Query: 176 ------------------QVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSK 217
                              VTKNLKKFIDSKRMP GDKQ+M+DLSQMIK+MPQYQKELSK
Sbjct: 282 NDELWVELRHQHIAVVSQNVTKNLKKFIDSKRMPAGDKQSMKDLSQMIKRMPQYQKELSK 341

Query: 218 YSTHLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYD 277
           YSTHLHLAEDCMKAYQGYVDKLC+VEQDLA G DAEGERIKDHMRNIVPILLDQ V++YD
Sbjct: 342 YSTHLHLAEDCMKAYQGYVDKLCKVEQDLAMGTDAEGERIKDHMRNIVPILLDQGVTHYD 401

Query: 278 KMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIP 337
           KMRII+LYIL+KNGISE+NL KLI HAQI P EKQ I+N+ANLG+N V+DGNRKK+YQ+P
Sbjct: 402 KMRIILLYILSKNGISEENLTKLIQHAQILPQEKQTIINMANLGVNIVVDGNRKKIYQVP 461

Query: 338 RKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPS 389
           RKERI+E TYQMSRWTP+VKDIME+ IEDKLD KHFPFL+G  TSSGYHAP+
Sbjct: 462 RKERITEQTYQMSRWTPVVKDIMEECIEDKLDVKHFPFLSGRATSSGYHAPT 513

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156549961|ref|XP_001603291.1| PREDICTED: protein ROP-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345488366|ref|XP_003425889.1| PREDICTED: protein ROP-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307213344|gb|EFN88796.1| Protein ROP [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380013711|ref|XP_003690893.1| PREDICTED: protein ROP-like isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|328788642|ref|XP_396375.3| PREDICTED: protein ROP isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|383859379|ref|XP_003705172.1| PREDICTED: protein ROP-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340721591|ref|XP_003399201.1| PREDICTED: protein ROP-like isoform 1 [Bombus terrestris] gi|350416096|ref|XP_003490839.1| PREDICTED: protein ROP-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340721593|ref|XP_003399202.1| PREDICTED: protein ROP-like isoform 2 [Bombus terrestris] gi|350416100|ref|XP_003490840.1| PREDICTED: protein ROP-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|193636538|ref|XP_001951920.1| PREDICTED: protein ROP-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
FB|FBgn0004574597 Rop "Ras opposite" [Drosophila 0.574 0.375 0.697 8.9e-149
ZFIN|ZDB-GENE-060531-166605 stxbp1b "syntaxin binding prot 0.530 0.342 0.653 1.7e-123
WB|WBGene00006757673 unc-18 [Caenorhabditis elegans 0.576 0.334 0.544 4.5e-123
UNIPROTKB|F1RS11602 STXBP1 "Uncharacterized protei 0.635 0.411 0.597 9.9e-95
UNIPROTKB|F6R0H3603 STXBP1 "Syntaxin-binding prote 0.635 0.411 0.597 3.4e-94
UNIPROTKB|P61763594 STXBP1 "Syntaxin-binding prote 0.635 0.417 0.597 3.4e-94
UNIPROTKB|F1P7D2591 STXBP1 "Uncharacterized protei 0.635 0.419 0.597 3.4e-94
UNIPROTKB|J9NTI1580 STXBP1 "Uncharacterized protei 0.635 0.427 0.597 3.4e-94
UNIPROTKB|P61764594 STXBP1 "Syntaxin-binding prote 0.635 0.417 0.597 3.4e-94
MGI|MGI:107363594 Stxbp1 "syntaxin binding prote 0.635 0.417 0.597 3.4e-94
FB|FBgn0004574 Rop "Ras opposite" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 846 (302.9 bits), Expect = 8.9e-149, Sum P(3) = 8.9e-149
 Identities = 157/225 (69%), Positives = 187/225 (83%)

Query:   165 MAYDLLNIENDQVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHL 224
             + ++ + + + QVT+NLKKF DSKRM   DK +MRDLSQMIKKMPQYQKELSKYSTHLHL
Sbjct:   300 LRHEHIAVVSTQVTQNLKKFTDSKRMGSADKSSMRDLSQMIKKMPQYQKELSKYSTHLHL 359

Query:   225 AEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIIL 284
             AEDCMK+YQ YVDKLCRVEQDLA G DAEGE+IKDHMRNIVPILLD NVSNYDK+RII L
Sbjct:   360 AEDCMKSYQNYVDKLCRVEQDLAMGTDAEGEKIKDHMRNIVPILLDANVSNYDKVRIIAL 419

Query:   285 YILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKERISE 344
             Y++ KNGISE+NL KL THAQ+ P ++  + NL+ LG+N + D +RKK Y +PRKER +E
Sbjct:   420 YVMIKNGISEENLTKLFTHAQLSPKDQDMVRNLSCLGINVIAD-SRKKQYSVPRKERTTE 478

Query:   345 CTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPS 389
              TYQMSRWTP++KDIMED IEDKLD +HFPFL G   ++ YHAP+
Sbjct:   479 STYQMSRWTPVIKDIMEDCIEDKLDLRHFPFLEGRAQNTNYHAPT 523
GO:0009416 "response to light stimulus" evidence=IMP
GO:0007268 "synaptic transmission" evidence=NAS;IDA;TAS
GO:0007269 "neurotransmitter secretion" evidence=NAS;IMP;TAS
GO:0043195 "terminal bouton" evidence=IDA
GO:0032940 "secretion by cell" evidence=IDA
GO:0005829 "cytosol" evidence=IDA;TAS
GO:0019898 "extrinsic to membrane" evidence=IDA
GO:0006887 "exocytosis" evidence=NAS;TAS
GO:0019905 "syntaxin binding" evidence=NAS
GO:0012506 "vesicle membrane" evidence=NAS
GO:0005737 "cytoplasm" evidence=NAS
GO:0016192 "vesicle-mediated transport" evidence=ISS;NAS
GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP
GO:0016082 "synaptic vesicle priming" evidence=NAS
GO:0000149 "SNARE binding" evidence=ISS
GO:0016020 "membrane" evidence=TAS
GO:0048489 "synaptic vesicle transport" evidence=TAS
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0000910 "cytokinesis" evidence=IMP
ZFIN|ZDB-GENE-060531-166 stxbp1b "syntaxin binding protein 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00006757 unc-18 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1RS11 STXBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F6R0H3 STXBP1 "Syntaxin-binding protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P61763 STXBP1 "Syntaxin-binding protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7D2 STXBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NTI1 STXBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P61764 STXBP1 "Syntaxin-binding protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107363 Stxbp1 "syntaxin binding protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q07327ROP_DROMENo assigned EC number0.59740.98200.6415yesN/A
O08599STXB1_MOUSENo assigned EC number0.56580.98200.6447yesN/A
Q5R6D2STXB1_PONABNo assigned EC number0.56580.98200.6447yesN/A
P61763STXB1_BOVINNo assigned EC number0.56580.98200.6447yesN/A
P61764STXB1_HUMANNo assigned EC number0.56580.98200.6447yesN/A
P61765STXB1_RATNo assigned EC number0.56580.98200.6447yesN/A
Q6R748STXB1_CHICKNo assigned EC number0.56580.98200.6447yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
pfam00995554 pfam00995, Sec1, Sec1 family 1e-99
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 6e-30
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  306 bits (785), Expect = 1e-99
 Identities = 142/468 (30%), Positives = 224/468 (47%), Gaps = 102/468 (21%)

Query: 1   MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
           + ++   G+T+VE+I   REPLP L A+Y I P E++V  +++D  +     YK+ H++F
Sbjct: 20  VSDLLEHGVTLVENIENKREPLPDLPAIYFIRPTEENVDRIIDDLKNP---KYKSYHIFF 76

Query: 61  T-----ECF-----------------YYFSFLLVS--ILVLRMAN--------------M 82
           T                          Y  F+ +   +  L + N              +
Sbjct: 77  TNSLSRSLLERLAEADVAELVKQVKEIYLDFIPLESDLFSLELPNSFRDLYSPDGDESDL 136

Query: 83  ERIAEQIATLCATLGEYPSVRYRSD-FDRNV--ELAQLVQQKLDAYKADEPTMGEGVEKA 139
           ERIAE + +L  TLGE P +RY+ +     +  +LAQL+Q+ LD + AD P+      K 
Sbjct: 137 ERIAEGLFSLLLTLGEIPIIRYQGNSAAERLAEKLAQLLQENLDLFDADNPSTPP--SKP 194

Query: 140 RSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVT--------------------- 178
           R  LLILDR  D ++PLLH+ T QAM +DLL I+N++VT                     
Sbjct: 195 RPVLLILDRSIDLITPLLHQWTYQAMVHDLLGIKNNRVTLDTPGNGGESKKEVVLDENDP 254

Query: 179 ------------------KNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYST 220
                             K LK++ +  +     K+++ DL + ++K+P++QKE  K S 
Sbjct: 255 FWVENRHLHFPDVAEKIKKELKEYKEENKNSNKKKKSISDLKEFVEKLPEFQKEKGKLSL 314

Query: 221 HLHLAEDCMKAYQGY-VDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKM 279
           HL+LAE+ MK  +   +DK+  +EQDLATG DA+ ++       I+ +L +  V   DK+
Sbjct: 315 HLNLAEELMKQIKERKLDKVSELEQDLATGSDADKQKKD-----ILELLNNPKVPLEDKL 369

Query: 280 RIIILYIL--NKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDG------NRK 331
           R+++LY L     G   ++L KL+ HA I P     + NL  LG              R 
Sbjct: 370 RLLLLYSLRDGGKGKDLEDLRKLLLHAGIGPEALNLVKNLEQLGGLLSRTSGSNFSDLRD 429

Query: 332 KLYQIPR---KERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFL 376
           KL  + +   K         +SR+ P++K I+ED I+ KLD   +P+ 
Sbjct: 430 KLKLLVKEVSKSLPKGVKNVLSRYKPLLKRILEDLIKGKLDTDSYPYF 477

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
KOG1300|consensus593 100.0
KOG1299|consensus549 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1301|consensus621 100.0
KOG1302|consensus600 100.0
>KOG1300|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-70  Score=545.43  Aligned_cols=380  Identities=55%  Similarity=0.867  Sum_probs=333.3

Q ss_pred             CchhhhcCccEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhcccccCCcceEEEeccchh--hHHhhh--------
Q psy8630           1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECF--YYFSFL--------   70 (390)
Q Consensus         1 mseL~e~gV~lve~i~~~R~~~~~~~aIyfi~Pt~~~i~~i~~d~~~~~~~~y~~y~i~F~~~~--~lle~l--------   70 (390)
                      |+|++++||++||.|++.|+|+|.+.|||||+||.+||++++.||.. ..|+|+.+||||++.|  ++++.+        
T Consensus        43 m~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~~~V~~~i~Df~~-~~~~Y~~ahifF~~~c~~~lf~~l~ks~~a~~  121 (593)
T KOG1300|consen   43 MSEILEEGITIVEDINKRREPLPSMEAIYFITPTEESVDCLIKDFEG-RSPLYKAAHIFFLDPCPDPLFNKLSKSRAAKK  121 (593)
T ss_pred             HHHHHHcCceeeeeccccCCCCCcceeEEEecCchhhHHHHHHhhcc-cCcccceEEEEEcCCCCHHHHHHHHhhhHhhh
Confidence            78999999999999999999999999999999999999999999973 3689999999999999  776665        


Q ss_pred             -----------Cc--------------------chHHHhHHHHHHHHHHHHHHHHHhCCCCeEEecCCCch-HHHHHHHH
Q psy8630          71 -----------LV--------------------SILVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDR-NVELAQLV  118 (390)
Q Consensus        71 -----------~p--------------------~~~~~~~~~~~~ia~~L~sl~~~lg~~P~Iry~~~~~~-a~~~a~~l  118 (390)
                                 .|                    +.......+++++|++|+|||.+||++|.|||.+.... |..+|..+
T Consensus       122 i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~as~l~~~v  201 (593)
T KOG1300|consen  122 IKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPDNAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNASELAQKV  201 (593)
T ss_pred             hhhheecccccceecceeeeecChhhHHHhcCchhhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCHHHHHHHH
Confidence                       11                    11123467899999999999999999999999986432 33666666


Q ss_pred             HHHHHH-HhccCCCCCCCCCCCCceEEEecCCCCcchhhhhhhchHHHHhhhccCCch----------------------
Q psy8630         119 QQKLDA-YKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND----------------------  175 (390)
Q Consensus       119 ~~~l~~-~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlh~~TYqali~dl~~i~~~----------------------  175 (390)
                      ..++.+ ++.+.++++.+|..+++.|||+||++|+++||+|+||||||+||+++|+||                      
T Consensus       202 a~~l~~~~~~~~~~~~~~p~~~~seLlIlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~~kk~vllde~  281 (593)
T KOG1300|consen  202 AAKLWDAYKAYKPSIGNGPQKTRSELLILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGEKKKEVLLDED  281 (593)
T ss_pred             HHHHHHHHHhcccccCCCCCcccceEEEEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCCccceeecccC
Confidence            666663 334445566667788999999999999999999999999999999999987                      


Q ss_pred             -----------------hHHHHHHHHHHhcCC--CCCCccCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8630         176 -----------------QVTKNLKKFIDSKRM--PQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYV  236 (390)
Q Consensus       176 -----------------~v~~~~~~~~~~~~~--~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~l  236 (390)
                                       .|.+.+++|..+|+.  .+++..|+.|+..+|+.||+|+++..+++.|++||++|++.++..+
T Consensus       282 D~~WveLRH~HIadvse~l~~~~k~f~~~nk~~~~~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~~L  361 (593)
T KOG1300|consen  282 DDLWVELRHKHIADVSERLTKKMKNFSSKNKRLQTKSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQEGL  361 (593)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             344567888887743  2344579999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcchhhhHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCchHHHHHHH
Q psy8630         237 DKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVN  316 (390)
Q Consensus       237 ~~~~~~Eq~i~~g~~~~g~~~~~~~~~i~~~l~~~~~~~~dkLRLl~L~~l~~~g~~~~~~~~ll~~~g~~~~~~~~l~~  316 (390)
                      .+++++||++++|.|..|+.+++.+..+.+++.+..++..||+|++++|.+..+|+.+.++.+|+++.|++.++.+++.|
T Consensus       362 ~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~l~~~~~~~~dklR~Illy~~~~~Gi~ee~l~kL~~~~~i~~~~~~ii~~  441 (593)
T KOG1300|consen  362 EKLGAIEQDLATGTDAEGEKIKDSLRDLLPILLESNVRLLDKLRLILLYIFERKGIIEENLAKLLQHAGISVEEMQIIQN  441 (593)
T ss_pred             HHHHHHHHHHhccCCcccccHHHHHHhhhhhhcccCchHHHHHHHHHHHHHhcCCccHHHHHHHhcccCCCchHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             HHHcCCcccccCCCCCCCCCCCcCCCCccccccccccchHHHHHHHHHhCCCCCCCCCCccCCCC
Q psy8630         317 LANLGLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVT  381 (390)
Q Consensus       317 l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~P~l~~ii~~~~~~~L~~~~yP~v~~~~~  381 (390)
                      +..+|.....++...+.....|++++.+..|.+|||+|.+++|+|++++|+||.++|||+++++.
T Consensus       442 ~~~~~~~~~~~~~~~k~~~~~rker~~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~  506 (593)
T KOG1300|consen  442 LHILGVPVTKDSFLLKFDPPERKERVEEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSE  506 (593)
T ss_pred             HHHhCCccccCcccccCCCCccccccccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCcc
Confidence            99999988776544444444577778899999999999999999999999999999999999983

>KOG1299|consensus Back     alignment and domain information
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1301|consensus Back     alignment and domain information
>KOG1302|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 1e-138
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 1e-138
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 1e-136
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 1e-128
2pjx_A592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 4e-83
2xhe_A 650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 5e-54
1mqs_A 671 Crystal Structure Of Sly1p In Complex With An N-Ter 8e-05
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure 
Iteration: 1

 Score =  489 bits (1259), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/463 (56%), Positives = 312/463 (67%), Gaps = 80/463 (17%)
Query: 1   MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
           M +I  EG+TIVEDI+K REPLPSLEAVYLITP EKSV +L++DF       Y+AAHV+F
Sbjct: 47  MTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFF 106
Query: 61  TECF--YYFSFLL-------------VSILVL------------------------RMAN 81
           T+      F+ L+             ++I  L                        +M N
Sbjct: 107 TDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKN 166
Query: 82  --MERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKA 139
             +ER+AEQIATLCATL EYP+VRYR ++  N  LAQL+Q KLDAYKAD+PTMGEG +KA
Sbjct: 167 PILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKA 226
Query: 140 RSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------------ 175
           RSQLLILDRGFD  SP+LHELT QAM+YDLL IEND                        
Sbjct: 227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDD 286
Query: 176 ---------------QVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYST 220
                          +VT++LK F  SKRM  G+K TMRDLSQM+KKMPQYQKELSKYST
Sbjct: 287 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYST 346
Query: 221 HLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMR 280
           HLHLAEDCMK YQG VDKLCRVEQDLA G DAEGE+IKD MR IVPILLD NVS YDK+R
Sbjct: 347 HLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIR 406
Query: 281 IIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKE 340
           II+LYI  KNGI+E+NLNKLI HAQI P + + I N+A+LG+  V D   ++  +  RKE
Sbjct: 407 IILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKE 466
Query: 341 RISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSS 383
           RISE TYQ+SRWTPI+KDIMED IEDKLD KH+P+++   ++S
Sbjct: 467 RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSAS 509
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 3e-83
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 3e-76
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 6e-73
2xhe_A 650 UNC18; exocytosis, exocytosis complex, snare, neur 1e-69
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 4e-34
1y9j_A159 SEC1 family domain containing protein 1; membrane 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
 Score =  264 bits (675), Expect = 3e-83
 Identities = 256/470 (54%), Positives = 302/470 (64%), Gaps = 80/470 (17%)

Query: 1   MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
           M +I  EG+TIVEDI+K REPLPSLEAVYLITP EKSV +L++DF       Y+AAHV+F
Sbjct: 47  MTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFF 106

Query: 61  T-----------------------ECFY------------------YFSFLLVSILVLRM 79
           T                                             + SF       ++ 
Sbjct: 107 TDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKN 166

Query: 80  ANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKA 139
             +ER+AEQIATLCATL EYP+VRYR ++  N  LAQL+Q KLDAYKAD+PTMGEG +KA
Sbjct: 167 PILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKA 226

Query: 140 RSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVT--------------------- 178
           RSQLLILDRGFD  SP+LHELT QAM+YDLL IEND                        
Sbjct: 227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDD 286

Query: 179 ------------------KNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYST 220
                             ++LK F  SKRM  G+K TMRDLSQM+KKMPQYQKELSKYST
Sbjct: 287 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYST 346

Query: 221 HLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMR 280
           HLHLAEDCMK YQG VDKLCRVEQDLA G DAEGE+IKD MR IVPILLD NVS YDK+R
Sbjct: 347 HLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIR 406

Query: 281 IIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKE 340
           II+LYI  KNGI+E+NLNKLI HAQI P + + I N+A+LG+  V D   ++  +  RKE
Sbjct: 407 IILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKE 466

Query: 341 RISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPSR 390
           RISE TYQ+SRWTPI+KDIMED IEDKLD KH+P+++   ++S       
Sbjct: 467 RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVS 516
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
2xhe_A 650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.73
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
Probab=100.00  E-value=8.2e-79  Score=634.29  Aligned_cols=381  Identities=67%  Similarity=1.032  Sum_probs=330.0

Q ss_pred             CchhhhcCccEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhcccccCCcceEEEeccchh--hHHhhh--------
Q psy8630           1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECF--YYFSFL--------   70 (390)
Q Consensus         1 mseL~e~gV~lve~i~~~R~~~~~~~aIyfi~Pt~~~i~~i~~d~~~~~~~~y~~y~i~F~~~~--~lle~l--------   70 (390)
                      |+||+++||++|+.|+++|+|+|+++|||||+||.+||++|++||+++.+++|++|||||+|.|  .++++|        
T Consensus        47 ~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~~~~~~~  126 (594)
T 1dn1_A           47 MTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKV  126 (594)
T ss_dssp             HHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHSGGGGT
T ss_pred             HHHHhhCCeEEEEecccccCCCCCCceEEEEeCCHHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHhcchHhh
Confidence            5899999999999999999999999999999999999999999999654589999999999998  666655        


Q ss_pred             ----------------------Ccch---------HHHhHHHHHHHHHHHHHHHHHhCCCCeEEecCCCchHHHHHHHHH
Q psy8630          71 ----------------------LVSI---------LVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQ  119 (390)
Q Consensus        71 ----------------------~p~~---------~~~~~~~~~~ia~~L~sl~~~lg~~P~Iry~~~~~~a~~~a~~l~  119 (390)
                                            .|..         .+.+.+.++++|++|+++|.++|.+|.|||++++..|+++|++++
T Consensus       127 i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~~~lA~~v~  206 (594)
T 1dn1_A          127 IKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQ  206 (594)
T ss_dssp             EEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGGTTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHH
T ss_pred             hcchheeeeeeEEccCCEEEecCcchHHHHhCCcccccchHHHHHHHHHHHHHHHHcCCCCEEEECCCchHHHHHHHHHH
Confidence                                  1211         134578999999999999999999999999998877999999999


Q ss_pred             HHHHHHhccCCCCCCCCCCCCceEEEecCCCCcchhhhhhhchHHHHhhhccCCch------------------------
Q psy8630         120 QKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------------  175 (390)
Q Consensus       120 ~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlh~~TYqali~dl~~i~~~------------------------  175 (390)
                      ++|+++..+++.++.++..++++|||+||++|++|||+||||||||+||+|||++|                        
T Consensus       207 ~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~~~~~k~~~L~~~D~  286 (594)
T 1dn1_A          207 DKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDD  286 (594)
T ss_dssp             HHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSSSSCEEEEEECSTTCH
T ss_pred             HHHHHhhccCccccCCCCCCCCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCCCCCccceEEecCCCCH
Confidence            99998776555555444567899999999999999999999999999999999987                        


Q ss_pred             ---------------hHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8630         176 ---------------QVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLC  240 (390)
Q Consensus       176 ---------------~v~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~l~~~~  240 (390)
                                     .|.+.+++|.++++..+++..+++||++||++||+++++++++++|++||++|++.+++.|++++
T Consensus       287 ~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~~l~~~~  366 (594)
T 1dn1_A          287 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVDKLC  366 (594)
T ss_dssp             HHHHHTTSBHHHHHHHHHHHHHHHHHHTTC-------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           23345666766654432346688999999999999999999999999999999999987799999


Q ss_pred             HHHHHHhcCCCcchhhhHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCchHHHHHHHHHHc
Q psy8630         241 RVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANL  320 (390)
Q Consensus       241 ~~Eq~i~~g~~~~g~~~~~~~~~i~~~l~~~~~~~~dkLRLl~L~~l~~~g~~~~~~~~ll~~~g~~~~~~~~l~~l~~l  320 (390)
                      ++||++++|.|.+|+.+++.++.|+++|.+++++..|||||+|||+|+.+|++++++.+|++++|++.+++.++.||+++
T Consensus       367 e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~~~~~~~~dkLRL~~Ly~l~~~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~l  446 (594)
T 1dn1_A          367 RVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHL  446 (594)
T ss_dssp             HHHHHHHHSBCSSCCBCCCTHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCBCHHHHHHHHHHHTCCHHHHHHHHHGGGG
T ss_pred             HHHHHHHcCCCcccchhHHHHHHHHHHHhCCCCChHhHHHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999888888888999999998889999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCCCCCCCcCCCCccccccccccchHHHHHHHHHhCCCCCCCCCCccCCCC
Q psy8630         321 GLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVT  381 (390)
Q Consensus       321 g~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~P~l~~ii~~~~~~~L~~~~yP~v~~~~~  381 (390)
                      |+...++++.++..+..++.++.+++|++|||+|+++++++++++|+|+++.|||++++++
T Consensus       447 G~~~~~~~~~~k~~~~~~k~~~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~  507 (594)
T 1dn1_A          447 GVPIVTDSTLRRRSKPERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSS  507 (594)
T ss_dssp             TCCCBCCCGGGCCCCCCCCCCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--
T ss_pred             CCccccccccccccccccccCCCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCC
Confidence            9887665443433444566778899999999999999999999999999999999988764
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 390
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-104
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 1e-102
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 1e-50
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  317 bits (814), Expect = e-104
 Identities = 256/470 (54%), Positives = 302/470 (64%), Gaps = 80/470 (17%)

Query: 1   MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYF 60
           M +I  EG+TIVEDI+K REPLPSLEAVYLITP EKSV +L++DF       Y+AAHV+F
Sbjct: 44  MTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFF 103

Query: 61  T-----------------------ECFY------------------YFSFLLVSILVLRM 79
           T                                             + SF       ++ 
Sbjct: 104 TDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKN 163

Query: 80  ANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQQKLDAYKADEPTMGEGVEKA 139
             +ER+AEQIATLCATL EYP+VRYR ++  N  LAQL+Q KLDAYKAD+PTMGEG +KA
Sbjct: 164 PILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKA 223

Query: 140 RSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIENDQVT--------------------- 178
           RSQLLILDRGFD  SP+LHELT QAM+YDLL IEND                        
Sbjct: 224 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDD 283

Query: 179 ------------------KNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYST 220
                             ++LK F  SKRM  G+K TMRDLSQM+KKMPQYQKELSKYST
Sbjct: 284 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYST 343

Query: 221 HLHLAEDCMKAYQGYVDKLCRVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMR 280
           HLHLAEDCMK YQG VDKLCRVEQDLA G DAEGE+IKD MR IVPILLD NVS YDK+R
Sbjct: 344 HLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIR 403

Query: 281 IIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANLGLNSVIDGNRKKLYQIPRKE 340
           II+LYI  KNGI+E+NLNKLI HAQI P + + I N+A+LG+  V D   ++  +  RKE
Sbjct: 404 IILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKE 463

Query: 341 RISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSSGYHAPSR 390
           RISE TYQ+SRWTPI+KDIMED IEDKLD KH+P+++   ++S       
Sbjct: 464 RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVS 513
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-69  Score=563.76  Aligned_cols=383  Identities=67%  Similarity=1.029  Sum_probs=326.7

Q ss_pred             CchhhhcCccEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhcccccCCcceEEEeccchh--hHHhhh--------
Q psy8630           1 MHEISAEGMTIVEDIHKAREPLPSLEAVYLITPCEKSVKALMNDFNSSTRTMYKAAHVYFTECF--YYFSFL--------   70 (390)
Q Consensus         1 mseL~e~gV~lve~i~~~R~~~~~~~aIyfi~Pt~~~i~~i~~d~~~~~~~~y~~y~i~F~~~~--~lle~l--------   70 (390)
                      |++|++|||++++.|+++|+|+|+++|||||+||.+||++|++||+++..++|++|||+|+|.+  ..++.|        
T Consensus        44 ~~~L~~~gV~l~~~l~~~r~~~~~~~aIy~i~Pt~~ni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~le~La~~~~~~~  123 (589)
T d1dn1a_          44 MTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKV  123 (589)
T ss_dssp             HHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHSGGGGT
T ss_pred             HHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcCCHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHhcCcccc
Confidence            5899999999999999999999999999999999999999999999765678999999999998  555555        


Q ss_pred             ----------------------Ccch---------HHHhHHHHHHHHHHHHHHHHHhCCCCeEEecCCCchHHHHHHHHH
Q psy8630          71 ----------------------LVSI---------LVLRMANMERIAEQIATLCATLGEYPSVRYRSDFDRNVELAQLVQ  119 (390)
Q Consensus        71 ----------------------~p~~---------~~~~~~~~~~ia~~L~sl~~~lg~~P~Iry~~~~~~a~~~a~~l~  119 (390)
                                            .|.+         ...+.+.++++|+||+++|.++|.+|.|||+++++.|+.+|++++
T Consensus       124 i~~v~e~~~df~~le~d~fsl~~~~~~~~~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~la~~l~  203 (589)
T d1dn1a_         124 IKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQ  203 (589)
T ss_dssp             EEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGGTTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHH
T ss_pred             CCeEEEEecceeeCCCCEEEecCCchHHHhcCCcccchhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHH
Confidence                                  1211         123567899999999999999999999999999888999999999


Q ss_pred             HHHHHHhccCCCCCCCCCCCCceEEEecCCCCcchhhhhhhchHHHHhhhccCCch------------------------
Q psy8630         120 QKLDAYKADEPTMGEGVEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLNIEND------------------------  175 (390)
Q Consensus       120 ~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlh~~TYqali~dl~~i~~~------------------------  175 (390)
                      ++++++.++++.++.++..++++|||+||++|++|||+|||||||||||+|||++|                        
T Consensus       204 ~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~DliTPLlh~~TYq~li~e~~gI~~n~v~i~~~~~~~~~~k~~~l~~~D~  283 (589)
T d1dn1a_         204 DKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDD  283 (589)
T ss_dssp             HHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSSSSCEEEEEECSTTCH
T ss_pred             HHHHHHHhcCcccCCCcccCCceEEEeccCccccccccccccHHHHHHHHhcccCCeEEecCCCCCcccceEeecCCCcH
Confidence            99998776666555555567899999999999999999999999999999999987                        


Q ss_pred             ---------------hHHHHHHHHHHhcCCCCCCccCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8630         176 ---------------QVTKNLKKFIDSKRMPQGDKQTMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKAYQGYVDKLC  240 (390)
Q Consensus       176 ---------------~v~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~l~~~~  240 (390)
                                     .|.+.+++|.++++..+++..+++||+++|+++|+++++++.++.|++|+++|++.++++|++++
T Consensus       284 ~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~~~l~~~~  363 (589)
T d1dn1a_         284 LWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVDKLC  363 (589)
T ss_dssp             HHHHHTTSBHHHHHHHHHHHHHHHHHHTTC-------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHhhcccHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           23345566666555444456688899999999999999999999999999999999976899999


Q ss_pred             HHHHHHhcCCCcchhhhHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCchHHHHHHHHHHc
Q psy8630         241 RVEQDLATGEDAEGERIKDHMRNIVPILLDQNVSNYDKMRIIILYILNKNGISEDNLNKLITHAQIQPPEKQAIVNLANL  320 (390)
Q Consensus       241 ~~Eq~i~~g~~~~g~~~~~~~~~i~~~l~~~~~~~~dkLRLl~L~~l~~~g~~~~~~~~ll~~~g~~~~~~~~l~~l~~l  320 (390)
                      ++||++++|.+.+|..+++.++.+.+++.+.+++.+|+|||+|||+++++|+++++++++++.++++..++.++.+|+.+
T Consensus       364 ~~Eq~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~d~LRL~~l~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~l~~l  443 (589)
T d1dn1a_         364 RVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHL  443 (589)
T ss_dssp             HHHHHHHHSBCSSCCBCCCTHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCBCHHHHHHHHHHHTCCHHHHHHHHHGGGG
T ss_pred             HHHHHHHcCCCcchhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence            99999999999988888888899999999889999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCCCCCCCcCCCCccccccccccchHHHHHHHHHhCCCCCCCCCCccCCCCCC
Q psy8630         321 GLNSVIDGNRKKLYQIPRKERISECTYQMSRWTPIVKDIMEDAIEDKLDQKHFPFLAGHVTSS  383 (390)
Q Consensus       321 g~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~P~l~~ii~~~~~~~L~~~~yP~v~~~~~~~  383 (390)
                      |....+.+...+......+....+..|++|||+|+++++++++++|+|+++.||++.+.+..+
T Consensus       444 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~Pl~~~l~~~~~~~~l~~~~~p~~~~~~~~~  506 (589)
T d1dn1a_         444 GVPIVTDSTLRRRSKPERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSAS  506 (589)
T ss_dssp             TCCCBCCCGGGCCCCCCCCCCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC----
T ss_pred             CCccccCchhhcccccccccCCcccccccccchHHHHHHHHHHHhCCCCcccCcccCCCcccc
Confidence            988765543333333334455678889999999999999999999999999999998765543
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure