Psyllid ID: psy8635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MANKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNISGAPTMERRSNLSPNDIQPRPEEVWTVLWGPPINCLLTTSSPSNVLNLHDNKPG
Secondary Structure (PSIPRED)
ccccccccccHHHHcHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHEccHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccEEEccccccEEEccccccccEEccccccc
Coil and Loop (DISEMBL)
mankggpetedQQRLRFQIELEFIQClanpnylnflaqrgylkdeAFVNYLKYLLYWkepqyakylkypmcLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAqnnisgaptmerrsnlspndiqprpeevwtvlwgppincllttsspsnvlnlhdnkpg
Flexible Loop (DISEMBL)
mankggpetedqQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNeaaqnnisgaptmerrsnlspndiQPRPEEVWTVLWGPPINCllttsspsnvlnlhdnkpg
Low Complexity Region (SEG)
MANKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNISGAPTMERRSNLSPNDIQPRPEEVWTVLWGPPINCLLTTSSPSNVLNLHDNKPG
Disordered region (IsUnstruct)
**************LRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLL******************************EVWTVLWGPPINCLLTT***************
Disordered Region (DISOPRED)
****************FQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTR**********************************************INCLLT****************
Disordered Region (DISEMBL)
************QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNISGAPTMERRSNLSPNDIQPRPEEVWTVLWGPPINCLLTTSSPSNVLNLHDNKPG
Disordered Region (DISPRO)
************QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQN******TMERRSNLSPNDIQPRPEEVWTVLWGPPINCLLTTSSPSNV*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNISGAPTMERRSNLSPNDIQPRPEEVWTVLWGPPINCLLTTSSPSNVLNLHDNKPG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q17DI7	218	Mediator of RNA polymeras	N/A	N/A	0.644	0.522	0.767	8e-50
Q8IH24	204	Mediator of RNA polymeras	yes	N/A	0.785	0.681	0.602	2e-49
Q28FE2	128	Mediator of RNA polymeras	yes	N/A	0.683	0.945	0.704	2e-48
Q4QR03	128	Mediator of RNA polymeras	N/A	N/A	0.666	0.921	0.729	1e-47
Q9CXU1	131	Mediator of RNA polymeras	yes	N/A	0.638	0.862	0.763	2e-47
A0JNN3	131	Mediator of RNA polymeras	yes	N/A	0.706	0.954	0.715	3e-47
Q9Y3C7	131	Mediator of RNA polymeras	yes	N/A	0.706	0.954	0.707	6e-47
Q6DH26	136	Mediator of RNA polymeras	yes	N/A	0.615	0.801	0.761	7e-47
Q6GQA1	129	Mediator of RNA polymeras	N/A	N/A	0.581	0.798	0.776	1e-45
P91869	163	Mediator of RNA polymeras	yes	N/A	0.604	0.656	0.598	8e-33

>sp|Q17DI7|MED31_AEDAE Mediator of RNA polymerase II transcription subunit 31 OS=Aedes aegypti GN=MED31 PE=3 SV=1

 Score =  196 bits (497), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 102/116 (87%), Gaps = 2/116 (1%)

Query: 1   MANKGG--PETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWK 58
           M  KG    E+ED Q+LRFQ ELEF+QCLANPNYL+FLAQRG+ KD  F+NYLKYLL+WK
Sbjct: 5   MVGKGKLPVESEDAQKLRFQAELEFVQCLANPNYLHFLAQRGFFKDSNFINYLKYLLHWK 64

Query: 59  EPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL 114
           +P+ AKYLKYPMCLYFLDLLQYEHFRREIVN+QC KFIDDQ +LLWQHYTR+RT+L
Sbjct: 65  DPEMAKYLKYPMCLYFLDLLQYEHFRREIVNAQCCKFIDDQAILLWQHYTRRRTRL 120

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Aedes aegypti (taxid: 7159)

>sp|Q8IH24|MED31_DROME Mediator of RNA polymerase II transcription subunit 31 OS=Drosophila melanogaster GN=MED31 PE=1 SV=2

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 110/161 (68%), Gaps = 22/161 (13%)

Query: 3   NKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQY 62
            K   E+E+ Q+ R+QIELEF+QCL+NPNYLNFLAQRG+ KD++F+NYLKYL YWKEP Y
Sbjct: 8   GKTAIESEELQKRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQSFINYLKYLQYWKEPDY 67

Query: 63  AKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLN------ 116
           AKYL YPMCLYFLDLLQYEHFRREIVNSQC KFIDDQ +L WQHYTRKR KL+       
Sbjct: 68  AKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKFIDDQAILQWQHYTRKRIKLIENVTAAQ 127

Query: 117 ----------------EAAQNNISGAPTMERRSNLSPNDIQ 141
                           EAA    S APT     + S  D Q
Sbjct: 128 QQQQQLQQQQQQANGMEAATGGESAAPTPNVNGSASTADSQ 168

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for activated transcription of the MtnA gene.

Drosophila melanogaster (taxid: 7227)

>sp|Q28FE2|MED31_XENTR Mediator of RNA polymerase II transcription subunit 31 OS=Xenopus tropicalis GN=med31 PE=2 SV=2

 Score =  191 bits (485), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 108/125 (86%), Gaps = 4/125 (3%)

Query: 5   GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
              ET++QQR+RFQ+ELEF+QCLANPNYLNFLAQRGY KD++FVNYLKYLLYWK+P+YAK
Sbjct: 3   AAMETDEQQRIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAK 62

Query: 65  YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL----LNEAAQ 120
           YLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR ++      +  Q
Sbjct: 63  YLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRMQQALAEQQQQ 122

Query: 121 NNISG 125
           NN SG
Sbjct: 123 NNTSG 127

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q4QR03|MD31A_XENLA Mediator of RNA polymerase II transcription subunit 31-A OS=Xenopus laevis GN=med31-a PE=2 SV=2

 Score =  188 bits (478), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 107/122 (87%), Gaps = 4/122 (3%)

Query: 8   ETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLK 67
           ET++QQR+RFQ+ELEF+QCLANPNYLNFLAQRGY KD+ FVNY+KYLLYWKEP+YAKYLK
Sbjct: 6   ETDEQQRIRFQLELEFVQCLANPNYLNFLAQRGYFKDKPFVNYMKYLLYWKEPEYAKYLK 65

Query: 68  YPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK----LLNEAAQNNI 123
           YP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +    L  +  QNN 
Sbjct: 66  YPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVRLQQALAEQQQQNNT 125

Query: 124 SG 125
           SG
Sbjct: 126 SG 127

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q9CXU1|MED31_MOUSE Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2

 Score =  187 bits (476), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 101/114 (88%), Gaps = 1/114 (0%)

Query: 1   MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
           MA     ET+D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKE
Sbjct: 1   MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKE 60

Query: 60  PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK 113
           P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +
Sbjct: 61  PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 114

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|A0JNN3|MED31_BOVIN Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1

 Score =  187 bits (476), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/130 (71%), Positives = 108/130 (83%), Gaps = 5/130 (3%)

Query: 1   MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
           MA     ET+D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKE
Sbjct: 1   MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKE 60

Query: 60  PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK----LL 115
           P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +    L 
Sbjct: 61  PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA 120

Query: 116 NEAAQNNISG 125
            +  QNN SG
Sbjct: 121 EQQQQNNASG 130

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|Q9Y3C7|MED31_HUMAN Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens GN=MED31 PE=1 SV=1

 Score =  186 bits (472), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 108/130 (83%), Gaps = 5/130 (3%)

Query: 1   MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
           MA     ET+D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWK+
Sbjct: 1   MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKD 60

Query: 60  PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK----LL 115
           P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +    L 
Sbjct: 61  PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA 120

Query: 116 NEAAQNNISG 125
            +  QNN SG
Sbjct: 121 EQQQQNNTSG 130

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q6DH26|MED31_DANRE Mediator of RNA polymerase II transcription subunit 31 OS=Danio rerio GN=med31 PE=2 SV=2

 Score =  186 bits (472), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 83/109 (76%), Positives = 101/109 (92%)

Query: 5   GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
           G  ET++Q R RFQ+ELEF+QCLANPNYLNFLAQRGYL+++ FVNYLKYLLYWKEP+YAK
Sbjct: 3   GVMETDEQARQRFQLELEFVQCLANPNYLNFLAQRGYLREKPFVNYLKYLLYWKEPEYAK 62

Query: 65  YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTK 113
           +LKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKRT+
Sbjct: 63  FLKYPHCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRTR 111

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|Q6GQA1|MD31B_XENLA Mediator of RNA polymerase II transcription subunit 31-B OS=Xenopus laevis GN=med31-b PE=2 SV=2

 Score =  182 bits (461), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 80/103 (77%), Positives = 97/103 (94%)

Query: 12  QQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMC 71
           Q R+RFQ+ELEF+QCLANPNYLNFLAQRGY KD++FVNYLKYLLYWK+P+YAKYLKYP C
Sbjct: 11  QHRIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQC 70

Query: 72  LYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL 114
           L+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR ++
Sbjct: 71  LHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRM 113

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|P91869|MED31_CAEEL Mediator of RNA polymerase II transcription subunit 31 OS=Caenorhabditis elegans GN=mdt-31 PE=3 SV=1

 Score =  139 bits (351), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 82/107 (76%)

Query: 8   ETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLK 67
           E+ + ++ RF++E EF+Q LANPNYLNFLAQRGY K+E FVNYLKYLLYWK+PQYA+ LK
Sbjct: 2   ESVESEKTRFEVECEFVQALANPNYLNFLAQRGYFKEEYFVNYLKYLLYWKDPQYARCLK 61

Query: 68  YPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL 114
           +P CL+ L+ LQ + FR  +     AKF++DQ VL WQ Y RKR +L
Sbjct: 62  FPQCLHMLEALQSQQFRDSMAYGPSAKFVEDQVVLQWQFYLRKRHRL 108

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
242025196	136	mediator of RNA polymerase II transcript	0.717	0.933	0.795	1e-56
48122204	156	PREDICTED: mediator of RNA polymerase II	0.694	0.788	0.821	3e-56
340720596	156	PREDICTED: mediator of RNA polymerase II	0.694	0.788	0.821	3e-56
383849282	156	PREDICTED: mediator of RNA polymerase II	0.717	0.814	0.795	3e-56
170285585	142	putative mediator of RNA polymerase II t	0.666	0.830	0.838	9e-56
332027942	156	Mediator of RNA polymerase II transcript	0.655	0.743	0.844	4e-55
307183274	156	Mediator of RNA polymerase II transcript	0.655	0.743	0.853	6e-55
322794326	157	hypothetical protein SINV_11440 [Solenop	0.655	0.738	0.844	1e-54
156554290	155	PREDICTED: mediator of RNA polymerase II	0.677	0.774	0.808	3e-54
307205092	156	Mediator of RNA polymerase II transcript	0.677	0.769	0.816	5e-54

>gi|242025196|ref|XP_002433012.1| mediator of RNA polymerase II transcription subunit, putative [Pediculus humanus corporis] gi|212518521|gb|EEB20274.1| mediator of RNA polymerase II transcription subunit, putative [Pediculus humanus corporis]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 115/127 (90%)

Query: 1   MANKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEP 60
           M NKGGPET++QQRLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+ FVNYLKYLLYWKEP
Sbjct: 2   MGNKGGPETDEQQRLRFQVELEFVQCLANPNYLNFLAQRGYFKDQTFVNYLKYLLYWKEP 61

Query: 61  QYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQ 120
           +YA+YLKYPMCLYFLDLLQYEHFRRE+VN+QC +FIDDQQ+LLWQHYTR+RT+LL + A 
Sbjct: 62  EYARYLKYPMCLYFLDLLQYEHFRREVVNAQCTRFIDDQQILLWQHYTRRRTRLLQQQAD 121

Query: 121 NNISGAP 127
            N    P
Sbjct: 122 QNPPQPP 128

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48122204|ref|XP_393244.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Apis mellifera] gi|380013463|ref|XP_003690775.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31-like [Apis florea]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 111/123 (90%)

Query: 5   GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
           GGPET+DQQRLRFQ+ELEF+QCLANPNYLNFLAQRGY KD  F+NYLKYLLYWKEP+YAK
Sbjct: 23  GGPETDDQQRLRFQVELEFVQCLANPNYLNFLAQRGYFKDSTFINYLKYLLYWKEPEYAK 82

Query: 65  YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNIS 124
           YLKYPMCLYFLDLLQYEHFRRE+VNSQC KFIDDQQ+LLWQHYTR+RT+LL  AA+    
Sbjct: 83  YLKYPMCLYFLDLLQYEHFRREVVNSQCTKFIDDQQILLWQHYTRRRTRLLQTAAEQTQH 142

Query: 125 GAP 127
             P
Sbjct: 143 TNP 145

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720596|ref|XP_003398720.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31-like [Bombus terrestris] gi|350401198|ref|XP_003486080.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31-like [Bombus impatiens]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 111/123 (90%)

Query: 5   GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
           GGPET+DQQRLRFQ+ELEF+QCLANPNYLNFLAQRGY KD  F+NYLKYLLYWKEP+YAK
Sbjct: 23  GGPETDDQQRLRFQVELEFVQCLANPNYLNFLAQRGYFKDATFINYLKYLLYWKEPEYAK 82

Query: 65  YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNIS 124
           YLKYPMCLYFLDLLQYEHFRRE+VNSQC KFIDDQQ+LLWQHYTR+RT+LL  AA+    
Sbjct: 83  YLKYPMCLYFLDLLQYEHFRREVVNSQCTKFIDDQQILLWQHYTRRRTRLLQTAAEQTQH 142

Query: 125 GAP 127
             P
Sbjct: 143 ANP 145

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849282|ref|XP_003700274.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31-like [Megachile rotundata]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 112/127 (88%)

Query: 1   MANKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEP 60
           +   GGPET+DQQRLRFQ+ELEF+QCLANPNYLNFLAQRGY KD  F+NYLKYLLYWKEP
Sbjct: 19  IGMNGGPETDDQQRLRFQVELEFVQCLANPNYLNFLAQRGYFKDSTFINYLKYLLYWKEP 78

Query: 61  QYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQ 120
           +YAKYLKYPMCLYFLDLLQYEHFRRE+VNSQC KFIDDQQ+LLWQHYTR+RT+LL  AA+
Sbjct: 79  EYAKYLKYPMCLYFLDLLQYEHFRREVVNSQCTKFIDDQQILLWQHYTRRRTRLLQTAAE 138

Query: 121 NNISGAP 127
                 P
Sbjct: 139 QTQHTNP 145

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170285585|emb|CAM34512.1| putative mediator of RNA polymerase II transcription subunit 31 [Cotesia congregata]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 99/118 (83%), Positives = 110/118 (93%)

Query: 5   GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
           GGPET+DQQR RFQ+ELEF+QCLANPNYLNFLAQRGY KD +FVNYLKYLLYWKEP+YAK
Sbjct: 23  GGPETDDQQRARFQVELEFVQCLANPNYLNFLAQRGYFKDSSFVNYLKYLLYWKEPEYAK 82

Query: 65  YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNN 122
           YLKYPMCLYFLDLLQYEHFRRE+VNSQC KFIDDQQ+LLWQHYTR+RT+LL  A++  
Sbjct: 83  YLKYPMCLYFLDLLQYEHFRREVVNSQCTKFIDDQQILLWQHYTRRRTRLLQTASETT 140

Source: Cotesia congregata

Species: Cotesia congregata

Genus: Cotesia

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027942|gb|EGI67994.1| Mediator of RNA polymerase II transcription subunit 31 [Acromyrmex echinatior]

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 98/116 (84%), Positives = 109/116 (93%)

Query: 5   GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
           G PET+DQQR+RFQ+ELEF+QCLANPNYLNFLAQRGY KD  F+NYLKYLLYWKEP+YAK
Sbjct: 23  GAPETDDQQRVRFQVELEFVQCLANPNYLNFLAQRGYFKDATFINYLKYLLYWKEPEYAK 82

Query: 65  YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQ 120
           YLKYPMCLYFLDLLQYEHFRRE+VNSQC KFIDDQQ+LLWQHYTR+RT+LL  AA+
Sbjct: 83  YLKYPMCLYFLDLLQYEHFRREVVNSQCTKFIDDQQILLWQHYTRRRTRLLQTAAE 138

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183274|gb|EFN70143.1| Mediator of RNA polymerase II transcription subunit 31 [Camponotus floridanus]

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 99/116 (85%), Positives = 109/116 (93%)

Query: 5   GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
           G PET+DQQRLRFQ+ELEF+QCLANPNYLNFLAQRGY KD  F+NYLKYLLYWKEP+YAK
Sbjct: 23  GAPETDDQQRLRFQVELEFVQCLANPNYLNFLAQRGYFKDLTFINYLKYLLYWKEPEYAK 82

Query: 65  YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQ 120
           YLKYPMCLYFLDLLQYEHFRRE+VNSQC KFIDDQQ+LLWQHYTR+RT+LL  AA+
Sbjct: 83  YLKYPMCLYFLDLLQYEHFRREVVNSQCTKFIDDQQILLWQHYTRRRTRLLQTAAE 138

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794326|gb|EFZ17446.1| hypothetical protein SINV_11440 [Solenopsis invicta]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 98/116 (84%), Positives = 108/116 (93%)

Query: 5   GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
           G  ET+DQQRLRFQ+ELEF+QCLANPNYLNFLAQRGY KD  F+NYLKYLLYWKEP+YAK
Sbjct: 22  GAAETDDQQRLRFQVELEFVQCLANPNYLNFLAQRGYFKDMTFINYLKYLLYWKEPEYAK 81

Query: 65  YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQ 120
           YLKYPMCLYFLDLLQYEHFRRE+VNSQC KFIDDQQ+LLWQHYTR+RT+LL  AA+
Sbjct: 82  YLKYPMCLYFLDLLQYEHFRREVVNSQCTKFIDDQQILLWQHYTRRRTRLLQTAAE 137

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554290|ref|XP_001600819.1| PREDICTED: mediator of RNA polymerase II transcription subunit 31-like [Nasonia vitripennis]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 97/120 (80%), Positives = 110/120 (91%)

Query: 1   MANKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEP 60
           +   G PET++QQR+RFQ+ELEF+QCLANPNYLNFLAQRGY KD  F+NYLKYLLYWKEP
Sbjct: 17  IGMNGVPETDEQQRIRFQVELEFVQCLANPNYLNFLAQRGYFKDSTFINYLKYLLYWKEP 76

Query: 61  QYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQ 120
           +YAKYLKYPMCLYFLDLLQYEHFRRE+VNSQC KFIDDQQ+LLWQHYTR+RT+LL  AA+
Sbjct: 77  EYAKYLKYPMCLYFLDLLQYEHFRREVVNSQCTKFIDDQQILLWQHYTRRRTRLLQTAAE 136

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205092|gb|EFN83563.1| Mediator of RNA polymerase II transcription subunit 31-A [Harpegnathos saltator]

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 109/120 (90%)

Query: 1   MANKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEP 60
           +   G PET+DQQRLRFQIELEF+QCLANPNYLNFLAQRGY K+  F+NYLKYLLYWKEP
Sbjct: 19  IGMNGAPETDDQQRLRFQIELEFVQCLANPNYLNFLAQRGYFKEVPFINYLKYLLYWKEP 78

Query: 61  QYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQ 120
           +YAKYLKYPMCLYFLDLLQYEHFRRE+VNSQC KFIDDQQ+LLWQHYTR+RT+LL  A +
Sbjct: 79  EYAKYLKYPMCLYFLDLLQYEHFRREVVNSQCTKFIDDQQILLWQHYTRRRTRLLQTATE 138

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
UNIPROTKB|A0JNN3	131	MED31 "Mediator of RNA polymer	0.706	0.954	0.723	3.7e-48
UNIPROTKB|I3LLR7	131	MED31 "Uncharacterized protein	0.706	0.954	0.723	3.7e-48
MGI|MGI:1914529	131	Med31 "mediator of RNA polymer	0.706	0.954	0.715	6e-48
FB|FBgn0037262	204	MED31 "Mediator complex subuni	0.717	0.622	0.697	7.7e-48
UNIPROTKB|Q9Y3C7	131	MED31 "Mediator of RNA polymer	0.706	0.954	0.715	7.7e-48
RGD|1309457	131	Med31 "mediator complex subuni	0.689	0.931	0.730	2.6e-47
ZFIN|ZDB-GENE-040718-114	136	med31 "mediator of RNA polymer	0.734	0.955	0.669	3.3e-47
UNIPROTKB|F1N9T5	130	MED31 "Uncharacterized protein	0.694	0.946	0.708	5.4e-47
UNIPROTKB|E2R6K3	134	MED31 "Uncharacterized protein	0.689	0.910	0.651	6.1e-39
UNIPROTKB|F6XQ10	130	MED31 "Uncharacterized protein	0.683	0.930	0.642	4.3e-38

UNIPROTKB|A0JNN3 MED31 "Mediator of RNA polymerase II transcription subunit 31" [Bos taurus (taxid:9913)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 94/130 (72%), Positives = 108/130 (83%)

Query:     1 MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
             MA     ET+D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKE
Sbjct:     1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKE 60

Query:    60 PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAA 119
             P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +L    A
Sbjct:    61 PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA 120

Query:   120 ----QNNISG 125
                 QNN SG
Sbjct:   121 EQQQQNNASG 130

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|I3LLR7 MED31 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 94/130 (72%), Positives = 108/130 (83%)

Query:     1 MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
             MA     ET+D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKE
Sbjct:     1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKE 60

Query:    60 PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAA 119
             P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +L    A
Sbjct:    61 PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA 120

Query:   120 ----QNNISG 125
                 QNN SG
Sbjct:   121 EQQQQNNTSG 130

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

MGI|MGI:1914529 Med31 "mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 93/130 (71%), Positives = 108/130 (83%)

Query:     1 MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
             MA     ET+D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKE
Sbjct:     1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKE 60

Query:    60 PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAA 119
             P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +L    A
Sbjct:    61 PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVRLQQALA 120

Query:   120 ----QNNISG 125
                 QNN +G
Sbjct:   121 EQQQQNNTAG 130

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0016592 "mediator complex" evidence=IDA

GO:0032403 "protein complex binding" evidence=ISO

FB|FBgn0037262 MED31 "Mediator complex subunit 31" [Drosophila melanogaster (taxid:7227)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 90/129 (69%), Positives = 106/129 (82%)

Query:     8 ETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLK 67
             E+E+ Q+ R+QIELEF+QCL+NPNYLNFLAQRG+ KD++F+NYLKYL YWKEP YAKYL 
Sbjct:    13 ESEELQKRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQSFINYLKYLQYWKEPDYAKYLM 72

Query:    68 YPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNE--AAQNNISG 125
             YPMCLYFLDLLQYEHFRREIVNSQC KFIDDQ +L WQHYTRKR KL+    AAQ     
Sbjct:    73 YPMCLYFLDLLQYEHFRREIVNSQCCKFIDDQAILQWQHYTRKRIKLIENVTAAQQQQQQ 132

Query:   126 APTMERRSN 134
                 ++++N
Sbjct:   133 LQQQQQQAN 141

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;ISS

GO:0016592 "mediator complex" evidence=ISS;IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS;IDA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008595 "anterior/posterior axis specification, embryo" evidence=IMP

UNIPROTKB|Q9Y3C7 MED31 "Mediator of RNA polymerase II transcription subunit 31" [Homo sapiens (taxid:9606)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/130 (71%), Positives = 108/130 (83%)

Query:     1 MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
             MA     ET+D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWK+
Sbjct:     1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKD 60

Query:    60 PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAA 119
             P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +L    A
Sbjct:    61 PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA 120

Query:   120 ----QNNISG 125
                 QNN SG
Sbjct:   121 EQQQQNNTSG 130

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|1309457 Med31 "mediator complex subunit 31" [Rattus norvegicus (taxid:10116)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 92/126 (73%), Positives = 106/126 (84%)

Query:     1 MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
             MA     ET+D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKE
Sbjct:     1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKE 60

Query:    60 PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL---LN 116
             P+YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +L   L 
Sbjct:    61 PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA 120

Query:   117 EAAQNN 122
             E  Q N
Sbjct:   121 EQQQQN 126

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006461 "protein complex assembly" evidence=IDA

GO:0016592 "mediator complex" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IDA

ZFIN|ZDB-GENE-040718-114 med31 "mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 87/130 (66%), Positives = 107/130 (82%)

Query:     5 GGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAK 64
             G  ET++Q R RFQ+ELEF+QCLANPNYLNFLAQRGYL+++ FVNYLKYLLYWKEP+YAK
Sbjct:     3 GVMETDEQARQRFQLELEFVQCLANPNYLNFLAQRGYLREKPFVNYLKYLLYWKEPEYAK 62

Query:    65 YLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNIS 124
             +LKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKRT+L    A+    
Sbjct:    63 FLKYPHCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRTRLQQALAEQQQQ 122

Query:   125 GAPTMERRSN 134
               P     +N
Sbjct:   123 QQPQAPSHAN 132

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1N9T5 MED31 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 90/127 (70%), Positives = 106/127 (83%)

Query:     2 ANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEP 60
             A +   + +D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKEP
Sbjct:     2 ARQAAMDADDTGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEP 61

Query:    61 QYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL---LNE 117
             +YAKYLKYP CL+ L+LLQYEHFR+E+VN+QCAKFID+QQ+L WQHY+RKR +L   L E
Sbjct:    62 EYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALAE 121

Query:   118 AAQNNIS 124
               Q N S
Sbjct:   122 QQQQNTS 128

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

UNIPROTKB|E2R6K3 MED31 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 84/129 (65%), Positives = 96/129 (74%)

Query:     1 MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
             MA     ET+D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKE
Sbjct:     1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKE 60

Query:    60 PQYAKYLKYPMCLYFLDLLQYEHF---RREIVNSQCAKFIDDQQVLLWQHYTRKRTKL-- 114
             P+YAKYLKY  CL+   LL   H     +  VN+QCAKFID+QQ+L WQHY+RKR +L  
Sbjct:    61 PEYAKYLKYDHCLFKFHLLTKCHLYDTSQGAVNAQCAKFIDEQQILHWQHYSRKRMRLQQ 120

Query:   115 -LNEAAQNN 122
              L E  Q N
Sbjct:   121 ALAEQQQQN 129

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|F6XQ10 MED31 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 81/126 (64%), Positives = 95/126 (75%)

Query:     1 MANKGGPETEDQ-QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKE 59
             MA     ET+D   RLRFQ+ELEF+QCLANPNYLNFLAQRGY KD+AFVNYLKYLLYWKE
Sbjct:     1 MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKE 60

Query:    60 PQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL---LN 116
             P+YAKYL Y  CL+  D + +    +  VN+QCAKFID+QQ+L WQHY+RKR +L   L 
Sbjct:    61 PEYAKYLNY-QCLHGKDPIPHYDTSQGAVNAQCAKFIDEQQILHWQHYSRKRMRLQQALA 119

Query:   117 EAAQNN 122
             E  Q N
Sbjct:   120 EQQQQN 125

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NI7	MED31_DICDI	No assigned EC number	0.5700	0.6045	0.6079	yes	N/A
Q6CAU9	MED31_YARLI	No assigned EC number	0.5151	0.5536	0.6125	yes	N/A
P91869	MED31_CAEEL	No assigned EC number	0.5981	0.6045	0.6564	yes	N/A
Q28FE2	MED31_XENTR	No assigned EC number	0.704	0.6836	0.9453	yes	N/A
P0CS74	MED31_CRYNJ	No assigned EC number	0.4521	0.6327	0.6222	yes	N/A
Q9CXU1	MED31_MOUSE	No assigned EC number	0.7631	0.6384	0.8625	yes	N/A
Q6BUN9	MED31_DEBHA	No assigned EC number	0.5222	0.5084	0.6666	yes	N/A
Q4QR03	MD31A_XENLA	No assigned EC number	0.7295	0.6666	0.9218	N/A	N/A
Q8IH24	MED31_DROME	No assigned EC number	0.6024	0.7853	0.6813	yes	N/A
Q8VYB1	MED31_ARATH	No assigned EC number	0.5048	0.5819	0.5255	yes	N/A
Q9Y3C7	MED31_HUMAN	No assigned EC number	0.7076	0.7062	0.9541	yes	N/A
Q6DH26	MED31_DANRE	No assigned EC number	0.7614	0.6158	0.8014	yes	N/A
Q6CUD2	MED31_KLULA	No assigned EC number	0.5156	0.3559	0.5080	yes	N/A
A0JNN3	MED31_BOVIN	No assigned EC number	0.7153	0.7062	0.9541	yes	N/A
Q6FR78	MED31_CANGA	No assigned EC number	0.5230	0.3559	0.4846	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	177
pfam05669	103	pfam05669, Med31, SOH1	8e-56
COG5088	114	COG5088, SOH1, Rad5p-binding protein [General func	1e-27

>gnl|CDD|218682 pfam05669, Med31, SOH1

 Score =  170 bits (434), Expect = 8e-56
 Identities = 64/103 (62%), Positives = 80/103 (77%)

Query: 12  QQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMC 71
           +   RF+IELEF+Q LANP YLNFLAQ+GY +D  F+NYLKYL YW+EP+YAKY+ YP C
Sbjct: 1   EDPTRFEIELEFVQSLANPQYLNFLAQQGYFEDPRFINYLKYLQYWREPEYAKYIVYPNC 60

Query: 72  LYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKL 114
           L+ L+LLQ E+FRR I N   A FID+Q +L WQ+Y RKR +L
Sbjct: 61  LHMLELLQNENFRRAISNPNFANFIDEQGLLHWQYYLRKRAQL 103

The family consists of Saccharomyces cerevisiae SOH1 homologues. SOH1 is responsible for the repression of temperature sensitive growth of the HPR1 mutant and has been found to be a component of the RNA polymerase II transcription complex. SOH1 not only interacts with factors involved in DNA repair, but transcription as well. Thus, the SOH1 protein may serve to couple these two processes. Length = 103

>gnl|CDD|227420 COG5088, SOH1, Rad5p-binding protein [General function prediction only]

 Score =   99 bits (249), Expect = 1e-27
 Identities = 37/89 (41%), Positives = 53/89 (59%)

Query: 16  RFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFL 75
           RF++ELEF+Q LANP YL  L Q+   + E F NYLKYL YW+ P+Y++++ YP CL+ L
Sbjct: 16  RFEVELEFVQSLANPQYLTLLTQQQIFESENFKNYLKYLEYWRNPEYSQFIVYPNCLFIL 75

Query: 76  DLLQYEHFRREIVNSQCAKFIDDQQVLLW 104
            LL        +      + +D+ Q   W
Sbjct: 76  KLLNGFMESAIVSEDGLLEGLDELQYPQW 104

Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG4086|consensus	130		100.0
PF05669	101	Med31: SOH1; InterPro: IPR008831 The Mediator comp	100.0
COG5088	114	SOH1 Rad5p-binding protein [General function predi	100.0

>KOG4086|consensus

Probab=100.00  E-value=1e-54  Score=342.75  Aligned_cols=126  Identities=61%  Similarity=1.044  Sum_probs=117.4

Q ss_pred             CCCCCCCCchhhcchhHhhhhHHhhhcChHHHHHHHhhCCCCcHHHHHHHHHHhhhcCCCccccccccchHHHHHhhccH
Q psy8635           2 ANKGGPETEDQQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYE   81 (177)
Q Consensus         2 ~~~~~~~~~~~~~~RFE~ELEFVQ~LANP~YL~~LAq~gyf~d~~FinYLkYL~YWk~PeYakyL~YP~cL~~LdLLQ~e   81 (177)
                      .++.+++++.+.+.|||+|||||||||||+||+||||+|||+|++|+||||||+|||+|+|+|||+||+|||||+|||++
T Consensus         2 ~~~a~~s~~~~~~~RFevELEFVQ~LaNp~YLnfLaQ~g~fk~e~F~nYLkYLeYWk~PeYak~l~YP~CL~mLelL~~~   81 (130)
T KOG4086|consen    2 NGNAMESPESDKRSRFEVELEFVQCLANPNYLNFLAQRGYFKDEAFVNYLKYLEYWKEPEYAKFLKYPQCLHMLELLQSE   81 (130)
T ss_pred             CCcccCCCCcccCcchhhhHHHHHHhcChHHHHHHHHcccccCHHHHHHHHHHHHhcCccHHHHHhhHhHHHHHHHhccH
Confidence            46677777777788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhChHHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhccCCCC
Q psy8635          82 HFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLLNEAAQNNISGAP  127 (177)
Q Consensus        82 ~FR~~i~n~~~~~~i~~Qq~~~Wq~y~r~R~~~~~~~~e~~~~~~~  127 (177)
                      .||..|++++++++|++||+++|+++.|+|.++.+...++.++..+
T Consensus        82 ~fr~~i~~~~~~k~ldeqq~~qW~~~~~kr~~~~~~l~q~qqe~~t  127 (130)
T KOG4086|consen   82 QFRDEISNAQLAKFLDEQQYLQWQNYMRKRWRLQQTLSQQQQEADT  127 (130)
T ss_pred             HHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHhHHHhhcc
Confidence            9999999999999999999999999999999998866666655443

>PF05669 Med31: SOH1; InterPro: IPR008831 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=3.4e-55  Score=333.82  Aligned_cols=101  Identities=66%  Similarity=1.215  Sum_probs=70.9

Q ss_pred             hcchhHhhhhHHhhhcChHHHHHHHhhCCCCcHHHHHHHHHHhhhcCCCccccccccchHHHHHhhccHHHHHHhhChHH
Q psy8635          13 QRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQC   92 (177)
Q Consensus        13 ~~~RFE~ELEFVQ~LANP~YL~~LAq~gyf~d~~FinYLkYL~YWk~PeYakyL~YP~cL~~LdLLQ~e~FR~~i~n~~~   92 (177)
                      +++|||+|||||||||||+||+|||++|||+||+|+||||||+|||+|+|+|||+||+||+||+|||+|+||++|+++++
T Consensus         1 ~~~RFe~ELEFVQ~LaNp~Yl~~La~~~y~~d~~F~nYLkYL~YW~~P~Yakyl~YP~cL~~L~LLq~~~FR~~i~~~~~   80 (101)
T PF05669_consen    1 NPTRFELELEFVQCLANPQYLNYLAQQGYFEDPAFINYLKYLQYWKRPEYAKYLVYPHCLHFLELLQNEEFRQAIANPDF   80 (101)
T ss_dssp             ---HHHHHHHHHHHTTSHHHHHHHH-SGGGTSTHHHHHHHHGGGGGSTTGGGG-SSTHHHHHHH-HHHHHHHH--B-TTS
T ss_pred             CcchhHHHHHHHHHhcCHHHHHHHHhcCccCCHHHHHHHHHHHHhCCCchhhhhcChHHHHHHHHHCcHHHHHHHhCCcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHH
Q psy8635          93 AKFIDDQQVLLWQHYTRKRTK  113 (177)
Q Consensus        93 ~~~i~~Qq~~~Wq~y~r~R~~  113 (177)
                      +++|++||+.||++++++|++
T Consensus        81 ~~~i~~q~~~~W~~~~~~r~~  101 (101)
T PF05669_consen   81 AKFIMDQQFLHWQHYRRKRMR  101 (101)
T ss_dssp             ---------------------
T ss_pred             cchhcccchhhhhcccccccC
Confidence            999999999999999999985

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med31 of the Mediator complex. It contains the Saccharomyces cerevisiae SOH1 homologues. SOH1 is responsible for the repression of temperature sensitive growth of the HPR1 mutant [] and has been found to be a component of the RNA polymerase II transcription complex. SOH1 not only interacts with factors involved in DNA repair, but transcription as well. Thus, the SOH1 protein may serve to couple these two processes [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006355 regulation of transcription, DNA-dependent, 0016592 mediator complex; PDB: 3FBI_D 3FBN_D.

>COG5088 SOH1 Rad5p-binding protein [General function prediction only]

Probab=100.00  E-value=2.3e-41  Score=261.88  Aligned_cols=100  Identities=38%  Similarity=0.729  Sum_probs=95.4

Q ss_pred             hhcchhHhhhhHHhhhcChHHHHHHHhhCCCCcHHHHHHHHHHhhhcCCCccccccccchHHHHHhhccHHHHHHhhChH
Q psy8635          12 QQRLRFQIELEFIQCLANPNYLNFLAQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREIVNSQ   91 (177)
Q Consensus        12 ~~~~RFE~ELEFVQ~LANP~YL~~LAq~gyf~d~~FinYLkYL~YWk~PeYakyL~YP~cL~~LdLLQ~e~FR~~i~n~~   91 (177)
                      .+.+|||+||||||+||||+||++|+|+|+|+|++|.+|||||+|||+|||+|||+||+||+||+||+++.|+..++.++
T Consensus        12 ~s~sRFE~ELEFvQ~L~Np~Yl~~Ltq~~~fese~F~~YL~YlEYWr~PeYs~fivYP~CL~iL~lLn~~~~~~~vs~~~   91 (114)
T COG5088          12 SSDSRFEVELEFVQSLANPQYLTLLTQQQIFESENFKNYLKYLEYWRNPEYSQFIVYPNCLFILKLLNGFMESAIVSEDG   91 (114)
T ss_pred             CCCchhHHHHHHHHHhcCHHHHHHHHHhhhhcCHHHHHHHHHHHHhhCCcccceeechhHHHHHHHhcchhHhhhhhhhH
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHH
Q psy8635          92 CAKFIDDQQVLLWQHYTRKR  111 (177)
Q Consensus        92 ~~~~i~~Qq~~~Wq~y~r~R  111 (177)
                      +.+-++++|+..|..-...|
T Consensus        92 l~~~l~e~qy~~Wlnk~~e~  111 (114)
T COG5088          92 LLEGLDELQYPQWLNKMVER  111 (114)
T ss_pred             HHHhhhHHHHHHHHHHHHHH
Confidence            99999999999998765543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
3fbi_B	130	Structure Of The Mediator Submodule Med7n31 Length		3e-11
3fbn_B	130	Structure Of The Mediator Submodule Med7n31 Length		3e-11

>pdb|3FBI|B Chain B, Structure Of The Mediator Submodule Med7n31 Length = 130

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 2  ANKGGPETEDQQRL--RFQIELEFIQCLANPNYLNFL-AQRGYLKDEAFVNYLKYLLYWK 58
           N     + DQ  L  RF++ELEFIQ LAN  Y+ +L  Q+   K   F NYLKYL YW 
Sbjct: 9  GNAPATPSSDQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWC 68
Query: 59 EPQYAKYLKYPMCLYFLDLL 78
           P Y++ + YP CL+ L LL
Sbjct: 69 NPPYSQCIVYPNCLFILKLL 88

>pdb|3FBN|B Chain B, Structure Of The Mediator Submodule Med7n31 Length = 130

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 2  ANKGGPETEDQQRL--RFQIELEFIQCLANPNYLNFL-AQRGYLKDEAFVNYLKYLLYWK 58
           N     + DQ  L  RF++ELEFIQ LAN  Y+ +L  Q+   K   F NYLKYL YW 
Sbjct: 9  GNAPATPSSDQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWC 68
Query: 59 EPQYAKYLKYPMCLYFLDLL 78
           P Y++ + YP CL+ L LL
Sbjct: 69 NPPYSQCIVYPNCLFILKLL 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
3fbi_B	130	Mediator of RNA polymerase II transcription subuni	4e-43

>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B Length = 130

 Score =  139 bits (351), Expect = 4e-43
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 8   ETEDQQRLRFQIELEFIQCLANPNYLNFL-AQRGYLKDEAFVNYLKYLLYWKEPQYAKYL 66
             ++    RF++ELEFIQ LAN  Y+ +L  Q+   K   F NYLKYL YW  P Y++ +
Sbjct: 17  SDQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWCNPPYSQCI 76

Query: 67  KYPMCLYFLDLLQYEHFRREIVNSQCAKFIDDQQVLLWQHYTRKRTKLL 115
            YP CL+ L LL        +      + +D+   ++     +   +++
Sbjct: 77  VYPNCLFILKLLNGFMESAIVNEDGLLEGLDELPKIIQLQGPQWMNEMV 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
3fbi_B	130	Mediator of RNA polymerase II transcription subuni	100.0

>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B

Probab=100.00  E-value=3.1e-45  Score=288.25  Aligned_cols=97  Identities=39%  Similarity=0.730  Sum_probs=76.8

Q ss_pred             CchhhcchhHhhhhHHhhhcChHHHHHH-HhhCCCCcHHHHHHHHHHhhhcCCCccccccccchHHHHHhhccHHHHHHh
Q psy8635           9 TEDQQRLRFQIELEFIQCLANPNYLNFL-AQRGYLKDEAFVNYLKYLLYWKEPQYAKYLKYPMCLYFLDLLQYEHFRREI   87 (177)
Q Consensus         9 ~~~~~~~RFE~ELEFVQ~LANP~YL~~L-Aq~gyf~d~~FinYLkYL~YWk~PeYakyL~YP~cL~~LdLLQ~e~FR~~i   87 (177)
                      ++...++|||+|||||||||||+||+|| |++|||+||+|+||||||+|||+|+|+|||+||+||+||+|||+ .||++|
T Consensus        18 ~~~~l~~RFe~ELEFVQ~LANP~YL~~Llaq~gy~~d~~FinYLkYL~YWk~PeYakyl~YP~cL~~L~LLq~-~fr~ai   96 (130)
T 3fbi_B           18 DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWCNPPYSQCIVYPNCLFILKLLNG-FMESAI   96 (130)
T ss_dssp             -CCCCCCHHHHHHHHHHHTTSHHHHHHHHTCSGGGTSTHHHHHHHHGGGGGSTTGGGGCSCTHHHHHHHHHHH-HHHHCC
T ss_pred             ccCcchhHHHHHHHHHHHhcCHHHHHHHHHHcccccCHHHHHHHHHHHHhcCCCchhHhcCccHHHHHHHHHH-HHHHHH
Confidence            3444699999999999999999999998 78899999999999999999999999999999999999999997 999999


Q ss_pred             hChH-----------HHH----HHHHHHHHHHhh
Q psy8635          88 VNSQ-----------CAK----FIDDQQVLLWQH  106 (177)
Q Consensus        88 ~n~~-----------~~~----~i~~Qq~~~Wq~  106 (177)
                      +|++           ++.    ..+++|+.+|+.
T Consensus        97 ~nedg~legl~~lp~~~q~qg~~~mn~mv~rw~~  130 (130)
T 3fbi_B           97 VNEDGLLEGLDELPKIIQLQGPQWMNEMVERWAN  130 (130)
T ss_dssp             BCSSSCBGGGTTCC--------------------
T ss_pred             hCcchhhhhHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence            9955           443    667888888863

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00