Psyllid ID: psy8666

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLYDLFRGVVNKTNNIRDIE
Secondary Structure (PSIPRED)
cEEEccccEEEEEEEccccccEEEEEEccEEEEcccccccccEEEcccccEEEEEEEccccccccEEEEEEEEccccEEEEccEEEEEEEcccccccccEEEEEEEccEEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEcccEEEEEcEcccccccEEEEEEccEEEccccccccccEEEEccccEEEEEEEcccccccccEEEEEEEccccEEEEccEEEEEEccccEEEccccEEEEEEEccEEEEEcccccccccc
Coil and Loop (DISEMBL)
mvvaknepvtlnckaegkpeptiewykdgelvetsksdaksqrvilptgSLFFLRVVhgkkeqdggvywclarnsvgtavsrNATLQVAVVIFFISFFRFKLSAYLYDLFRGVvnktnnirdie
Flexible Loop (DISEMBL)
mvvaknepvtlnckaegkpeptiewykdGELVetsksdaksqrvilPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLYDLfrgvvnktnnirdie
Low Complexity Region (SEG)
MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLYDLFRGVVNKTNNIRDIE
Disordered region (IsUnstruct)
***********************EWYK***************RVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLYDLFRGVVNKT*******
Disordered Region (DISOPRED)
MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETS*********ILPTGSLFFLRV******QDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS**************RGVVNKTNNIR***
Disordered Region (DISEMBL)
MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELV*********QRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLYDLFRGVVNKTNNIRDIE
Disordered Region (DISPRO)
MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLYDLFRGVVNKTNN*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLYDLFRGVVNKTNNIRDIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q9HCK4	1378	Roundabout homolog 2 OS=H	yes	N/A	0.733	0.066	0.641	1e-31
Q7TPD3	1470	Roundabout homolog 2 OS=M	yes	N/A	0.733	0.061	0.641	1e-31
O55005	1651	Roundabout homolog 1 OS=R	yes	N/A	0.733	0.055	0.641	7e-31
O89026	1612	Roundabout homolog 1 OS=M	no	N/A	0.733	0.056	0.641	8e-31
Q9Y6N7	1651	Roundabout homolog 1 OS=H	no	N/A	0.733	0.055	0.641	9e-31
Q9Z2I4	1366	Roundabout homolog 3 OS=M	no	N/A	0.733	0.066	0.543	5e-27
Q96MS0	1386	Roundabout homolog 3 OS=H	no	N/A	0.733	0.065	0.532	3e-26
G5EBF1	1273	Protein sax-3 OS=Caenorha	yes	N/A	0.717	0.069	0.446	1e-14
P97798	1493	Neogenin OS=Mus musculus	no	N/A	0.717	0.059	0.436	2e-12
Q92859	1461	Neogenin OS=Homo sapiens	no	N/A	0.717	0.060	0.436	6e-12

>sp|Q9HCK4|ROBO2_HUMAN Roundabout homolog 2 OS=Homo sapiens GN=ROBO2 PE=1 SV=2

 Score =  134 bits (338), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/92 (64%), Positives = 77/92 (83%), Gaps = 1/92 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V+K EP TLNCKAEG+P PTIEWYKDGE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 40  VIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 99

Query: 61  KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
           + + D G Y C+ARN +G AVSRNA+L+VA++
Sbjct: 100 RSKPDEGSYVCVARNYLGEAVSRNASLEVALL 131

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.
Homo sapiens (taxid: 9606)

>sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Robo2 PE=2 SV=2

 Score =  134 bits (338), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/92 (64%), Positives = 77/92 (83%), Gaps = 1/92 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V+K EP TLNCKAEG+P PTIEWYKDGE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 40  VIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 99

Query: 61  KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
           + + D G Y C+ARN +G AVSRNA+L+VA++
Sbjct: 100 RSKPDEGSYVCVARNYLGEAVSRNASLEVALL 131

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Mus musculus (taxid: 10090)

>sp|O55005|ROBO1_RAT Roundabout homolog 1 OS=Rattus norvegicus GN=Robo1 PE=1 SV=1

 Score =  132 bits (331), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 76/92 (82%), Gaps = 1/92 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 77  LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 136

Query: 61  KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
           K + D GVY C+ARN +G AVS NA+L+VA++
Sbjct: 137 KSRPDEGVYICVARNYLGEAVSHNASLEVAIL 168

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development.

Rattus norvegicus (taxid: 10116)

>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1

 Score =  132 bits (331), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 76/92 (82%), Gaps = 1/92 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 38  LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 97

Query: 61  KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
           K + D GVY C+ARN +G AVS NA+L+VA++
Sbjct: 98  KSRPDEGVYICVARNYLGEAVSHNASLEVAIL 129

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex (By similarity). May be required for lung development.

Mus musculus (taxid: 10090)

>sp|Q9Y6N7|ROBO1_HUMAN Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1

 Score =  132 bits (331), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 76/92 (82%), Gaps = 1/92 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 77  LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 136

Query: 61  KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
           K + D GVY C+ARN +G AVS NA+L+VA++
Sbjct: 137 KSRPDEGVYVCVARNYLGEAVSHNASLEVAIL 168

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development.

Homo sapiens (taxid: 9606)

>sp|Q9Z2I4|ROBO3_MOUSE Roundabout homolog 3 OS=Mus musculus GN=Robo3 PE=1 SV=2

 Score =  119 bits (298), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/92 (54%), Positives = 73/92 (79%), Gaps = 1/92 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +VV++ EP TL C+AEG+P P IEWYK+G  V T++ D ++ R++LP+G+LFF R+VHG+
Sbjct: 73  LVVSRGEPATLPCRAEGRPRPNIEWYKNGARVATAREDPRAHRLLLPSGALFFPRIVHGR 132

Query: 61  KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
           + + D GVY C+ARN +G A SRNA+L+VAV+
Sbjct: 133 RSRPDEGVYTCVARNYLGAAASRNASLEVAVL 164

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1. Required for hindbrain axon midline crossing.

Mus musculus (taxid: 10090)

>sp|Q96MS0|ROBO3_HUMAN Roundabout homolog 3 OS=Homo sapiens GN=ROBO3 PE=1 SV=2

 Score =  116 bits (291), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 72/92 (78%), Gaps = 1/92 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V++ EP TL C+AEG+P P IEWYK+G  V T + D ++ R++LP+G+LFF R+VHG+
Sbjct: 73  LLVSRGEPATLPCRAEGRPRPNIEWYKNGARVATVREDPRAHRLLLPSGALFFPRIVHGR 132

Query: 61  KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
           + + D GVY C+ARN +G A SRNA+L+VAV+
Sbjct: 133 RARPDEGVYTCVARNYLGAAASRNASLEVAVL 164

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1 (By similarity). Required for hindbrain axon midline crossing.

Homo sapiens (taxid: 9606)

>sp|G5EBF1|SAX3_CAEEL Protein sax-3 OS=Caenorhabditis elegans GN=sax-3 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 5/94 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           +VV++  P TLNC A  KP    I WYKDG+ V T+K    S R++L TGSLF L+V  G
Sbjct: 40  VVVSRGSPATLNCGA--KPSTAKITWYKDGQPVITNKEQVNSHRIVLDTGSLFLLKVNSG 97

Query: 60  K--KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           K  K+ D G Y+C+A N  G   S   +L++A++
Sbjct: 98  KNGKDSDAGAYYCVASNEHGEVKSNEGSLKLAML 131

Required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body and for multiple aspects of sensory, motor, and interneuron axon guidance.

Caenorhabditis elegans (taxid: 6239)

>sp|P97798|NEO1_MOUSE Neogenin OS=Mus musculus GN=Neo1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 5/94 (5%)

Query: 5   KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ- 63
           +   V LNC A  +P P IEW KDG  +     D   +R +LP GSLF   VVH K  + 
Sbjct: 77  RGSSVILNCSAYSEPSPNIEWKKDGTFLNLESDD---RRQLLPDGSLFISNVVHSKHNKP 133

Query: 64  DGGVYWCLAR-NSVGTAVSRNATLQVAVVIFFIS 96
           D G Y C+A  +++GT VSR A L VA +  F S
Sbjct: 134 DEGFYQCVATVDNLGTIVSRTAKLTVAGLPRFTS 167

May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.

Mus musculus (taxid: 10090)

>sp|Q92859|NEO1_HUMAN Neogenin OS=Homo sapiens GN=NEO1 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 5   KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ- 63
           +   V LNC A  +P P IEW KDG  +     D   +R +LP GSLF   VVH K  + 
Sbjct: 66  RGSSVILNCSAYSEPSPKIEWKKDGTFLNLVSDD---RRQLLPDGSLFISNVVHSKHNKP 122

Query: 64  DGGVYWCLAR-NSVGTAVSRNATLQVAVVIFFIS 96
           D G Y C+A   S+GT +SR A L VA +  F S
Sbjct: 123 DEGYYQCVATVESLGTIISRTAKLIVAGLPRFTS 156

May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
322790486	226	hypothetical protein SINV_11661 [Solenop	0.766	0.420	0.789	4e-39
383849836	1517	PREDICTED: roundabout homolog 2 [Megachi	0.669	0.054	0.802	6e-39
328775940	1505	PREDICTED: roundabout homolog 2 [Apis me	0.637	0.052	0.802	7e-39
350418664	1516	PREDICTED: roundabout homolog 2-like [Bo	0.669	0.054	0.802	8e-39
340723047	1509	PREDICTED: roundabout homolog 2-like [Bo	0.669	0.055	0.802	8e-39
380014261	1429	PREDICTED: roundabout homolog 2-like [Ap	0.637	0.055	0.802	8e-39
332024754	128	Roundabout-like protein 2 [Acromyrmex ec	0.717	0.695	0.820	5e-38
307176549	103	Roundabout-like protein 2 [Camponotus fl	0.717	0.864	0.808	2e-37
345496933	1421	PREDICTED: roundabout homolog 2-like [Na	0.717	0.062	0.780	7e-37
91079308	1073	PREDICTED: similar to roundabout 1 [Trib	0.661	0.076	0.758	5e-36

>gi|322790486|gb|EFZ15364.1| hypothetical protein SINV_11661 [Solenopsis invicta]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 83/95 (87%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++VAKNEPVTLNCKAEGKPEP IEWYKDGELV+TS  DAKS RV+LPTGSLFFLRV+HGK
Sbjct: 64  IIVAKNEPVTLNCKAEGKPEPVIEWYKDGELVQTSPGDAKSHRVLLPTGSLFFLRVMHGK 123

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
           KEQDGGVYWC+ARN  G+  SRNATL VA + F I
Sbjct: 124 KEQDGGVYWCVARNKAGSVPSRNATLTVAEINFTI 158

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849836|ref|XP_003700541.1| PREDICTED: roundabout homolog 2 [Megachile rotundata]

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/91 (80%), Positives = 81/91 (89%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++VAKNEPVTLNCKAEGKP P IEWYKDGELV+TS  DAKS RV+LPTGSLFFLRV+HGK
Sbjct: 35  IIVAKNEPVTLNCKAEGKPPPVIEWYKDGELVQTSPGDAKSHRVLLPTGSLFFLRVMHGK 94

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           KEQDGGVYWC+ARN  G+  SRNATL VAV+
Sbjct: 95  KEQDGGVYWCVARNEAGSVPSRNATLTVAVL 125

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328775940|ref|XP_396192.4| PREDICTED: roundabout homolog 2 [Apis mellifera]

 Score =  164 bits (414), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 82/91 (90%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++VAKNEPVTLNCKAEGKP+P IEWYKDGELV+TS  DAKS RV+LPTGSLFFLRV+HGK
Sbjct: 35  IIVAKNEPVTLNCKAEGKPQPVIEWYKDGELVQTSPGDAKSHRVLLPTGSLFFLRVMHGK 94

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           KEQDGGVYWC+ARN  G+  SRNATL VAV+
Sbjct: 95  KEQDGGVYWCVARNQAGSVPSRNATLTVAVL 125

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418664|ref|XP_003491930.1| PREDICTED: roundabout homolog 2-like [Bombus impatiens]

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 82/91 (90%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++VAKNEPVTLNCKAEGKP+P IEWYKDGELV+TS  DAKS RV+LPTGSLFFLRV+HGK
Sbjct: 35  IIVAKNEPVTLNCKAEGKPQPVIEWYKDGELVQTSPGDAKSHRVLLPTGSLFFLRVMHGK 94

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           KEQDGGVYWC+ARN  G+  SRNATL VAV+
Sbjct: 95  KEQDGGVYWCVARNQAGSVPSRNATLTVAVL 125

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723047|ref|XP_003399910.1| PREDICTED: roundabout homolog 2-like [Bombus terrestris]

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 82/91 (90%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++VAKNEPVTLNCKAEGKP+P IEWYKDGELV+TS  DAKS RV+LPTGSLFFLRV+HGK
Sbjct: 35  IIVAKNEPVTLNCKAEGKPQPVIEWYKDGELVQTSPGDAKSHRVLLPTGSLFFLRVMHGK 94

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           KEQDGGVYWC+ARN  G+  SRNATL VAV+
Sbjct: 95  KEQDGGVYWCVARNQAGSVPSRNATLTVAVL 125

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014261|ref|XP_003691158.1| PREDICTED: roundabout homolog 2-like [Apis florea]

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 82/91 (90%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++VAKNEPVTLNCKAEGKP+P IEWYKDGELV+TS  DAKS RV+LPTGSLFFLRV+HGK
Sbjct: 35  IIVAKNEPVTLNCKAEGKPQPVIEWYKDGELVQTSPGDAKSHRVLLPTGSLFFLRVMHGK 94

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           KEQDGGVYWC+ARN  G+  SRNATL VAV+
Sbjct: 95  KEQDGGVYWCVARNQAGSVPSRNATLTVAVL 125

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024754|gb|EGI64943.1| Roundabout-like protein 2 [Acromyrmex echinatior]

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/89 (82%), Positives = 80/89 (89%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++VAKNEPVTLNCKAEGKPEP IEWYKDGELV+TS  DAKS RV+LPTGSLFFLRV+HGK
Sbjct: 40  IIVAKNEPVTLNCKAEGKPEPVIEWYKDGELVQTSPGDAKSHRVLLPTGSLFFLRVMHGK 99

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVA 89
           KEQDGGVYWC+ARN  G+  SRNATL VA
Sbjct: 100 KEQDGGVYWCVARNKAGSVPSRNATLTVA 128

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176549|gb|EFN66036.1| Roundabout-like protein 2 [Camponotus floridanus]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/89 (80%), Positives = 79/89 (88%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++VAKNEPVTLNCKAEGKPEP IEWYKDGELV+TS  D KS RV+LPTGSLFFLRV+HGK
Sbjct: 15  IIVAKNEPVTLNCKAEGKPEPVIEWYKDGELVQTSPGDTKSHRVLLPTGSLFFLRVMHGK 74

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVA 89
           KEQDGGVYWC+ARN  G+  SRNATL VA
Sbjct: 75  KEQDGGVYWCVARNKAGSVPSRNATLTVA 103

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496933|ref|XP_003427853.1| PREDICTED: roundabout homolog 2-like [Nasonia vitripennis]

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/91 (78%), Positives = 81/91 (89%), Gaps = 2/91 (2%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + VAK+EPVTLNCKAEGKP+P IEWYKDGELV+TS SD  S RV+LPTGSLFFLRV+HGK
Sbjct: 41  ITVAKHEPVTLNCKAEGKPKPEIEWYKDGELVQTSPSD--SHRVLLPTGSLFFLRVIHGK 98

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           KEQDGGVYWC+A+N  G+A SRNATL VAV+
Sbjct: 99  KEQDGGVYWCVAKNQAGSATSRNATLTVAVL 129

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079308|ref|XP_967065.1| PREDICTED: similar to roundabout 1 [Tribolium castaneum]

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 82/91 (90%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++VAKNEPVTLNCKAEG+PEPTIEW+KDGE V+TS +D KS RV+LP GSLFFLR ++ K
Sbjct: 28  IIVAKNEPVTLNCKAEGRPEPTIEWFKDGEPVKTSPTDNKSHRVLLPAGSLFFLRTMNSK 87

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           KEQD GVYWC+ARN+ G+AVSRNATLQVAV+
Sbjct: 88  KEQDAGVYWCVARNTAGSAVSRNATLQVAVL 118

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
UNIPROTKB|F8WBR3	564	ROBO2 "Roundabout homolog 2" [	0.733	0.161	0.641	6.4e-30
ZFIN|ZDB-GENE-040426-1874	1287	zgc:77784 "zgc:77784" [Danio r	0.733	0.070	0.630	2.5e-28
ZFIN|ZDB-GENE-001019-1	1513	robo2 "roundabout homolog 2" [	0.733	0.060	0.630	6.7e-28
UNIPROTKB|F1NTM1	1359	ROBO2 "Uncharacterized protein	0.733	0.066	0.641	9.4e-28
UNIPROTKB|Q9HCK4	1378	ROBO2 "Roundabout homolog 2" [	0.733	0.066	0.641	9.6e-28
MGI|MGI:1890110	1470	Robo2 "roundabout homolog 2 (D	0.733	0.061	0.641	1.1e-27
MGI|MGI:1274781	1612	Robo1 "roundabout homolog 1 (D	0.733	0.056	0.641	1.2e-27
UNIPROTKB|F1Q2N4	1622	ROBO1 "Uncharacterized protein	0.733	0.056	0.641	1.2e-27
RGD|61941	1651	Robo1 "roundabout, axon guidan	0.733	0.055	0.641	1.2e-27
UNIPROTKB|Q9Y6N7	1651	ROBO1 "Roundabout homolog 1" [	0.733	0.055	0.641	1.2e-27

UNIPROTKB|F8WBR3 ROBO2 "Roundabout homolog 2" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
 Identities = 59/92 (64%), Positives = 77/92 (83%)

Query:     1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             ++V+K EP TLNCKAEG+P PTIEWYKDGE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct:    40 VIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 99

Query:    61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
             + + D G Y C+ARN +G AVSRNA+L+VA++
Sbjct:   100 RSKPDEGSYVCVARNYLGEAVSRNASLEVALL 131

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-1874 zgc:77784 "zgc:77784" [Danio rerio (taxid:7955)]

 Score = 329 (120.9 bits), Expect = 2.5e-28, P = 2.5e-28
 Identities = 58/92 (63%), Positives = 78/92 (84%)

Query:     1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             ++V+K EP TLNCKAEG+P PT++WYKDGE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct:    41 LIVSKGEPATLNCKAEGRPAPTVQWYKDGEHVETDKDDPRSHRMLLPSGSLFFLRIVHGR 100

Query:    61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
             + + D GVY C+ARN +G AVSRNA+L+VA++
Sbjct:   101 RSKPDEGVYTCVARNYLGEAVSRNASLEVAIL 132

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-001019-1 robo2 "roundabout homolog 2" [Danio rerio (taxid:7955)]

 Score = 326 (119.8 bits), Expect = 6.7e-28, P = 6.7e-28
 Identities = 58/92 (63%), Positives = 77/92 (83%)

Query:     1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             ++V+K EP TLNCKAEG+P PT+EWYKDGE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct:    39 LIVSKGEPATLNCKAEGRPTPTVEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 98

Query:    61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
             + + D G Y C+ARN +G AVSRNA+L+VA++
Sbjct:    99 RSKPDEGAYVCVARNYLGEAVSRNASLEVALL 130

GO:0007411 "axon guidance" evidence=IMP

GO:0033564 "anterior/posterior axon guidance" evidence=IGI;IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IGI;IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048843 "negative regulation of axon extension involved in axon guidance" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IGI

UNIPROTKB|F1NTM1 ROBO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 324 (119.1 bits), Expect = 9.4e-28, P = 9.4e-28
 Identities = 59/92 (64%), Positives = 77/92 (83%)

Query:     1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             ++V+K EP TLNCKAEG+P PTIEWYKDGE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct:    20 VIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 79

Query:    61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
             + + D G Y C+ARN +G AVSRNA+L+VA++
Sbjct:    80 RSKPDEGSYVCVARNYLGEAVSRNASLEVALL 111

GO:0001656 "metanephros development" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0050772 "positive regulation of axonogenesis" evidence=IEA

GO:0050925 "negative regulation of negative chemotaxis" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

UNIPROTKB|Q9HCK4 ROBO2 "Roundabout homolog 2" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 9.6e-28, P = 9.6e-28
 Identities = 59/92 (64%), Positives = 77/92 (83%)

Query:     1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             ++V+K EP TLNCKAEG+P PTIEWYKDGE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct:    40 VIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 99

Query:    61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
             + + D G Y C+ARN +G AVSRNA+L+VA++
Sbjct:   100 RSKPDEGSYVCVARNYLGEAVSRNASLEVALL 131

GO:0016021 "integral to membrane" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0008046 "axon guidance receptor activity" evidence=ISS;NAS

GO:0007417 "central nervous system development" evidence=NAS

GO:0050772 "positive regulation of axonogenesis" evidence=IDA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0001656 "metanephros development" evidence=ISS

GO:0007411 "axon guidance" evidence=ISS;TAS

GO:0030673 "axolemma" evidence=ISS

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISS

GO:0016199 "axon midline choice point recognition" evidence=ISS

GO:0001657 "ureteric bud development" evidence=IMP

GO:0050925 "negative regulation of negative chemotaxis" evidence=IDA

GO:0021891 "olfactory bulb interneuron development" evidence=ISS

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0051964 "negative regulation of synapse assembly" evidence=ISS

MGI|MGI:1890110 Robo2 "roundabout homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 324 (119.1 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 59/92 (64%), Positives = 77/92 (83%)

Query:     1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             ++V+K EP TLNCKAEG+P PTIEWYKDGE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct:    40 VIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 99

Query:    61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
             + + D G Y C+ARN +G AVSRNA+L+VA++
Sbjct:   100 RSKPDEGSYVCVARNYLGEAVSRNASLEVALL 131

GO:0001656 "metanephros development" evidence=IMP

GO:0001657 "ureteric bud development" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006935 "chemotaxis" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IMP

GO:0008046 "axon guidance receptor activity" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IGI

GO:0021891 "olfactory bulb interneuron development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030673 "axolemma" evidence=IDA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0042802 "identical protein binding" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0050925 "negative regulation of negative chemotaxis" evidence=ISO

MGI|MGI:1274781 Robo1 "roundabout homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 324 (119.1 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 59/92 (64%), Positives = 76/92 (82%)

Query:     1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct:    38 LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 97

Query:    61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
             K + D GVY C+ARN +G AVS NA+L+VA++
Sbjct:    98 KSRPDEGVYICVARNYLGEAVSHNASLEVAIL 129

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0006935 "chemotaxis" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IGI;IMP

GO:0008046 "axon guidance receptor activity" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IGI

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021891 "olfactory bulb interneuron development" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0030275 "LRR domain binding" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0030673 "axolemma" evidence=IDA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048814 "regulation of dendrite morphogenesis" evidence=ISO

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0050925 "negative regulation of negative chemotaxis" evidence=ISO

GO:0060763 "mammary duct terminal end bud growth" evidence=IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

UNIPROTKB|F1Q2N4 ROBO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 59/92 (64%), Positives = 76/92 (82%)

Query:     1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct:    48 LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 107

Query:    61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
             K + D GVY C+ARN +G AVS NA+L+VA++
Sbjct:   108 KSRPDEGVYVCVARNYLGEAVSHNASLEVAIL 139

GO:0016021 "integral to membrane" evidence=IEA

RGD|61941 Robo1 "roundabout, axon guidance receptor, homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 324 (119.1 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 59/92 (64%), Positives = 76/92 (82%)

Query:     1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct:    77 LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 136

Query:    61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
             K + D GVY C+ARN +G AVS NA+L+VA++
Sbjct:   137 KSRPDEGVYICVARNYLGEAVSHNASLEVAIL 168

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=TAS

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0007156 "homophilic cell adhesion" evidence=ISO

GO:0007411 "axon guidance" evidence=ISO;IDA

GO:0007417 "central nervous system development" evidence=IEP

GO:0008046 "axon guidance receptor activity" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IEP;ISO

GO:0021510 "spinal cord development" evidence=IEP

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021891 "olfactory bulb interneuron development" evidence=ISO

GO:0030275 "LRR domain binding" evidence=ISO

GO:0030424 "axon" evidence=IDA

GO:0030673 "axolemma" evidence=ISO

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0050925 "negative regulation of negative chemotaxis" evidence=ISO

GO:0060763 "mammary duct terminal end bud growth" evidence=ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

UNIPROTKB|Q9Y6N7 ROBO1 "Roundabout homolog 1" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 59/92 (64%), Positives = 76/92 (82%)

Query:     1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct:    77 LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 136

Query:    61 KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
             K + D GVY C+ARN +G AVS NA+L+VA++
Sbjct:   137 KSRPDEGVYVCVARNYLGEAVSHNASLEVAIL 168

GO:0030673 "axolemma" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0050772 "positive regulation of axonogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009986 "cell surface" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0050925 "negative regulation of negative chemotaxis" evidence=IDA

GO:0016199 "axon midline choice point recognition" evidence=ISS

GO:0030275 "LRR domain binding" evidence=IPI

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IDA

GO:0007399 "nervous system development" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0008046 "axon guidance receptor activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IMP

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IMP

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IMP

GO:0035385 "Roundabout signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TPD3	ROBO2_MOUSE	No assigned EC number	0.6413	0.7338	0.0619	yes	N/A
O55005	ROBO1_RAT	No assigned EC number	0.6413	0.7338	0.0551	yes	N/A
Q9HCK4	ROBO2_HUMAN	No assigned EC number	0.6413	0.7338	0.0660	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	8e-50
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	3e-18
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-16
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-15
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-14
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-14
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	5e-14
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	2e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-13
smart00409	85	smart00409, IG, Immunoglobulin	5e-13
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	1e-12
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	7e-12
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	3e-11
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	9e-11
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	1e-10
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	2e-10
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	4e-10
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	6e-10
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	1e-09
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	3e-09
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	3e-09
cd05874	77	cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like	6e-09
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	1e-08
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	3e-08
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	4e-08
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	5e-08
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	9e-08
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	1e-07
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	4e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	4e-07
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	5e-07
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	8e-07
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	9e-07
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	9e-07
cd05749	81	cd05749, Ig2_Tyro3_like, Second immunoglobulin (Ig	1e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-06
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	2e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	5e-06
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	1e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	1e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	2e-05
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-05
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	3e-05
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	7e-05
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	2e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	3e-04
cd05759	82	cd05759, Ig2_KIRREL3-like, Second immunoglobulin (	3e-04
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	3e-04
pfam08205	89	pfam08205, C2-set_2, CD80-like C2-set immunoglobul	4e-04
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	5e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	5e-04
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	6e-04
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	7e-04
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	0.002
cd05863	67	cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l	0.002
cd05761	82	cd05761, Ig2_Necl-1-4_like, Second immunoglobulin	0.002

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score =  153 bits (388), Expect = 8e-50
 Identities = 56/90 (62%), Positives = 74/90 (82%), Gaps = 1/90 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V+K +P TLNCKAEG+P PTI+W K+G+ +ET K D +S R++LP+GSLFFLRVVHG+
Sbjct: 11  LIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGR 70

Query: 61  K-EQDGGVYWCLARNSVGTAVSRNATLQVA 89
           K   D GVY C+A NS+G AVSRNA+L+VA
Sbjct: 71  KGRSDEGVYVCVAHNSLGEAVSRNASLEVA 100

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 73.3 bits (180), Expect = 3e-18
 Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 8  PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ-DGG 66
          PV LNC AEG+P P IEW KDG L+     +   +R  LP GSL    VVH K  + D G
Sbjct: 16 PVVLNCSAEGEPPPKIEWKKDGVLLNLVSDE---RRQQLPNGSLLITSVVHSKHNKPDEG 72

Query: 67 VYWCLARN-SVGTAVSRNATLQV 88
           Y C+A+N S+G+ VSR A L V
Sbjct: 73 FYQCVAQNDSLGSIVSRTARLTV 95

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 66.3 bits (162), Expect = 7e-16
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 6  NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
           + VTL C AEG P P I W KDG+ +  S       R +    +L    V      +D 
Sbjct: 2  GQSVTLTCPAEGNPVPNITWLKDGKPLPESN------RFVASGSTLTIKSV----SLEDS 51

Query: 66 GVYWCLARNSVG 77
          G+Y C+A NS G
Sbjct: 52 GLYTCVAENSAG 63

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 66.5 bits (163), Expect = 1e-15
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + V + E     C   G P+PT+ W+KDG+ + +S         +   G  + L  +   
Sbjct: 10 VEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRF-----KVTYEGGTYTLT-ISNV 63

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
          +  D G Y C+A NS G A +  A L V
Sbjct: 64 QPDDEGKYTCVATNSAGEAEAS-AELTV 90

Length = 90

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 63.2 bits (154), Expect = 2e-14
 Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 1  MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVH 58
            VA  E   L C    G PEPT+ W KDG+ +     +  ++RV I+  G+L       
Sbjct: 6  TQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPL-----NLDNERVRIVDDGNLLIAEA-- 58

Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            ++ D G Y C+A N VG   S  A L V
Sbjct: 59 --RKSDEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 62.1 bits (150), Expect = 4e-14
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV--ILPTGSLFFLRVVHGKKEQDGG 66
          VTL C A G P PTI W K+G+ + +S              + +L    V      +D G
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNV----TLEDSG 56

Query: 67 VYWCLARNSVGTA 79
           Y C+A NS GT 
Sbjct: 57 TYTCVASNSAGTV 69

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 62.1 bits (151), Expect = 5e-14
 Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 16/87 (18%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          VV + E VTL C A G P P   WYKDG  +               + + FF   V    
Sbjct: 10 VVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLS-------------SSQNGFFTPNVS--- 53

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
           +D G Y C+A N  G   S   TL V
Sbjct: 54 AEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 60.3 bits (146), Expect = 2e-13
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 8/79 (10%)

Query: 11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHGKKEQDGGVYW 69
          L C A G P P I W KDG    T    A+ +R+ ++P   +FF+  V   K +D GVY 
Sbjct: 3  LECAATGHPTPQIAWQKDG---GTDFPAARERRMHVMPEDDVFFIVDV---KIEDTGVYS 56

Query: 70 CLARNSVGTAVSRNATLQV 88
          C A+N+ G+ +S NATL V
Sbjct: 57 CTAQNTAGS-ISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 59.4 bits (144), Expect = 5e-13
 Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + V + E VTL+C+A G P P + WYK G  +          R    T +L    V    
Sbjct: 4  VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-TSTLTISNV---- 58

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +D G Y C A NS G+  S   TL V
Sbjct: 59 TPEDSGTYTCAATNSSGS-ASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 59.4 bits (144), Expect = 5e-13
 Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + V + E VTL+C+A G P P + WYK G  +          R    T +L    V    
Sbjct: 4  VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-TSTLTISNV---- 58

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +D G Y C A NS G+  S   TL V
Sbjct: 59 TPEDSGTYTCAATNSSGS-ASSGTTLTV 85

Length = 85

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 59.0 bits (143), Expect = 1e-12
 Identities = 33/80 (41%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 7  EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG-KKEQDG 65
            V+LNC+A G P PT  W  +G    T   D    R  L  G+L    V+    K +D 
Sbjct: 20 GKVSLNCRARGSPPPTYRWLMNG----TEIDDEPDSRYSLVGGNL----VISNPSKAKDA 71

Query: 66 GVYWCLARNSVGTAVSRNAT 85
          G Y CLA N VGT +SR AT
Sbjct: 72 GRYQCLASNIVGTVLSREAT 91

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 56.9 bits (137), Expect = 7e-12
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 9/80 (11%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE-QDGGV 67
          V LNC+A G P PT  W ++G  ++T +SD    R  L  G+L    ++    E +D G 
Sbjct: 22 VILNCEARGNPVPTYRWLRNGTEIDT-ESDY---RYSLIDGNL----IISNPSEVKDSGR 73

Query: 68 YWCLARNSVGTAVSRNATLQ 87
          Y CLA NS+G+ +SR A LQ
Sbjct: 74 YQCLATNSIGSILSREALLQ 93

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 54.9 bits (132), Expect = 3e-11
 Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 9  VTLNCKAEGKPEPTIEW-YKDGELVETSKSDAKSQ-RV-ILPTGSLFFLRVVHGKKEQDG 65
          VTLNC AEG P PTI W +  G              R+ +L  GSL    V+    E+D 
Sbjct: 1  VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVL----EEDS 56

Query: 66 GVYWCLARNSVGTAVSRNATLQV 88
          G Y C   N VG   S++  L V
Sbjct: 57 GYYLCKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 53.5 bits (128), Expect = 9e-11
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
          T+ C A G P+P I W+KD   V+T+ +    Q   L +G+L     +   +E D G Y 
Sbjct: 2  TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ---LRSGALQ----IENSEESDQGKYE 54

Query: 70 CLARNSVGTAVSRNATLQV 88
          C+A NS GT  S  A L V
Sbjct: 55 CVATNSAGTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 53.4 bits (128), Expect = 1e-10
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
          VTL C  +G P PT +W++DG    T  SD +    +        LR        D G+Y
Sbjct: 1  VTLRCHIDGHPRPTYQWFRDG----TPLSDGQGNYSVSSKERTLTLR---SAGPDDSGLY 53

Query: 69 WCLARNSVGTAVS-RNATLQVA 89
          +C A N+ G+  S +N TL + 
Sbjct: 54 YCCAHNAFGSVCSSQNFTLSII 75

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 53.4 bits (128), Expect = 2e-10
 Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 7  EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
          E VTL C+A   P  T  W  +G    T    A   R  L  G+L    + + +K +D G
Sbjct: 20 EKVTLGCRARASPPATYRWKMNG----TEIKFAPESRYTLVAGNLV---INNPQKARDAG 72

Query: 67 VYWCLARNSVGTAVSRNATLQ 87
           Y CLA N  GT VSR A L+
Sbjct: 73 SYQCLAINRCGTVVSREANLR 93

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 51.6 bits (124), Expect = 4e-10
 Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 9  VTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
          V   C+  G P PT+ W K DGEL        K +  IL   SL    V       D G 
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGEL-------PKGRAEILDDKSLKIRNV----TAGDEGS 49

Query: 68 YWCLARNSVGTAVSRNATLQV 88
          Y C A N VG   +  A+L V
Sbjct: 50 YTCEAENMVGKIEAS-ASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 51.3 bits (123), Expect = 6e-10
 Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 12/81 (14%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHGKKEQDGGV 67
          V + CK +  P+PTI W K  EL+  S       R+ I P GSL  L V     + D G 
Sbjct: 4  VIIECKPKAAPKPTISWSKGTELLTNSS------RICIWPDGSLEILNV----TKSDEGK 53

Query: 68 YWCLARNSVGTAVSRNATLQV 88
          Y C A N  G A S   +L V
Sbjct: 54 YTCFAENFFGKANS-TGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG--KKEQDGG 66
          + + C+A+G P PT  W ++G   +      K  RV +   S   +       + E   G
Sbjct: 1  IVIKCEAKGNPPPTFSWTRNGTHFDP----EKDPRVTMKPDSGTLVIDNMNGGRAEDYEG 56

Query: 67 VYWCLARNSVGTAVSRNATLQ 87
           Y C A N +GTA+S    L+
Sbjct: 57 EYQCYASNELGTAISNEIHLR 77

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 49.9 bits (119), Expect = 3e-09
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 11/76 (14%)

Query: 13 CKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA 72
          CKA G P P   W K+G+ +      A   R+ +  G L   ++       D G+Y C+A
Sbjct: 21 CKASGNPRPAYRWLKNGQPL------ASENRIEVEAGDLRITKLSL----SDSGMYQCVA 70

Query: 73 RNSVGTAVSRNATLQV 88
           N  GT +  +A L V
Sbjct: 71 ENKHGT-IYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 49.4 bits (118), Expect = 3e-09
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 7  EPVTLNCKAEGKPEPTIEW-YKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
          +  TL CKA G PEP I W   DG+L+  S     S+ ++   G+L  L  +   K  D 
Sbjct: 2  QRATLRCKARGDPEPAIHWISPDGKLISNS-----SRTLVYDNGTLDIL--ITTVK--DT 52

Query: 66 GVYWCLARNSVGTAVSR 82
          G + C+A N+ G A + 
Sbjct: 53 GSFTCIASNAAGEATAT 69

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

 Score = 48.8 bits (116), Expect = 6e-09
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILP--TGSLFFLRVVHGKKEQDGG 66
          + + C+A+GKP P+  W ++G   +  K D K   V +   TG+L    +   K E   G
Sbjct: 1  IVIQCEAKGKPPPSFSWTRNGTHFDIDK-DPK---VTMKPNTGTLVINIMNGEKAEAYEG 56

Query: 67 VYWCLARNSVGTAVSRN 83
          VY C ARN  G AVS N
Sbjct: 57 VYQCTARNERGAAVSNN 73

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 47.9 bits (114), Expect = 1e-08
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 11/72 (15%)

Query: 9  VTLNCKAEGKPEPTIEWYKDG-ELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
          V + C A+G PEPTI W KDG ++ E+ K        I P G L     +      D G 
Sbjct: 1  VQIPCSAQGDPEPTITWNKDGVQVTESGKFH------ISPEGYL----AIRDVGVADQGR 50

Query: 68 YWCLARNSVGTA 79
          Y C+ARN++G A
Sbjct: 51 YECVARNTIGYA 62

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 15/74 (20%)

Query: 9  VTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK--EQDG 65
          + L C AEG P P I W K  GEL         + R    T    F + +      E+D 
Sbjct: 1  LLLECIAEGLPTPEISWIKIGGEL--------PADR----TKFENFNKTLKIDNVSEEDD 48

Query: 66 GVYWCLARNSVGTA 79
          G Y C A NS+G+A
Sbjct: 49 GEYRCTASNSLGSA 62

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 46.9 bits (111), Expect = 4e-08
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
          + + C+A+G P PT +W ++G+    +K    S R    +G+L       G+ E   G Y
Sbjct: 1  IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEY 58

Query: 69 WCLARNSVGTAVSRNATLQ 87
           C ARN++GTA+S    LQ
Sbjct: 59 QCFARNNLGTALSNKILLQ 77

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 46.5 bits (110), Expect = 5e-08
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
          +L C AEG P P + W K+G  +    S    Q  ++  GS   +  V     +D G Y 
Sbjct: 2  SLRCHAEGIPLPRLTWLKNGMDITPKLSK---QLTLIANGSELHISNVR---YEDTGAYT 55

Query: 70 CLARNSVG 77
          C+A+N  G
Sbjct: 56 CIAKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 46.1 bits (109), Expect = 9e-08
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
          V++NC+A   P P  +W K+   +     D  + R  +  G+L    + +  K +D G Y
Sbjct: 22 VSVNCRARANPFPIYKWRKNNLDI-----DLTNDRYSMVGGNLV---INNPDKYKDAGRY 73

Query: 69 WCLARNSVGTAVSRNATL 86
           C+  N  G   SR ATL
Sbjct: 74 VCIVSNIYGKVRSREATL 91

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 45.5 bits (108), Expect = 1e-07
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 7  EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
          E   L+C+AEG P+PTI W  +G  +E    D +  R +   G+L    V       D  
Sbjct: 2  ETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPR--RRVDG-GTLILSNVQPN----DTA 54

Query: 67 VYWCLARNSVGTAVSRNATLQV 88
          VY C A N  G  ++ NA + V
Sbjct: 55 VYQCNASNVHGYLLA-NAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 17/78 (21%)

Query: 7  EPVTLNCKAEGKPEPTIEWYKDGELVET-----SKSDAKSQRVILPTGSLFFLRVVHGKK 61
          + VTL C A+G PEPT+ W KDGE +E+     S ++  S+  I        L V     
Sbjct: 19 QSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTI--------LDV----D 66

Query: 62 EQDGGVYWCLARNSVGTA 79
          + D   Y C+A N  G  
Sbjct: 67 KLDEAEYTCIAENKAGEQ 84

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 44.3 bits (105), Expect = 4e-07
 Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
          V L C A G P PTI W KDG+  +         +V     +L    VV      D G Y
Sbjct: 12 VRLKCPASGNPRPTITWLKDGKPFKKEHRI-GGYKVRKKKWTLILESVV----PSDSGKY 66

Query: 69 WCLARNSVGTAVSRNATLQVAV 90
           C+  N  G   S N T +V V
Sbjct: 67 TCIVENKYG---SINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 2  VVAK--NEPVTLNCKAEGKPEPTIEWYKDGE-LVETSKSDAKSQRVILPTGSLFFLRVVH 58
          V+A+     V L C A G P P I W KD + L  T   +++ ++  L   +L       
Sbjct: 3  VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNL------- 55

Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            K +D G Y C   N  G     NAT +V V
Sbjct: 56 --KPEDSGKYTCHVSNRAGEI---NATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 43.3 bits (102), Expect = 8e-07
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 7  EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
          E   L+C+ EG P P I W  +G  +E +       R  + +G+L    V    +  D  
Sbjct: 2  ETARLDCQVEGIPTPNITWSINGAPIEGT---DPDPRRHVSSGALILTDV----QPSDTA 54

Query: 67 VYWCLARNSVGTAVSRNATLQV 88
          VY C ARN  G  ++ NA + V
Sbjct: 55 VYQCEARNRHGNLLA-NAHVHV 75

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 43.3 bits (102), Expect = 9e-07
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 7  EPVTLNCKAEGKPEPTIEWYK---DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
          E  + +C   G+P P I W K     E +    +  +   V+   G L    V++  + Q
Sbjct: 2  ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQL----VIYNAQPQ 57

Query: 64 DGGVYWCLARNSVG 77
          D G+Y C ARNS G
Sbjct: 58 DAGLYTCTARNSGG 71

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 43.1 bits (101), Expect = 9e-07
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 7  EPVTLNCKAEGKP-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
            VTL C AEG P  PTI WY++G +   S     S   +           +     +D 
Sbjct: 16 GGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTL----------TLSSVTSEDS 65

Query: 66 GVYWCLARN 74
          G Y C+A N
Sbjct: 66 GTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143226 cd05749, Ig2_Tyro3_like, Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 1  MVVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
          + V  N P  L C+A G PEP  I W++ G         A S  V+   G       ++ 
Sbjct: 8  LSVTANTPFNLTCQAVGPPEPVEILWWQGG--SPLGDPPAPSPSVLNVPG-------LN- 57

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATL 86
              +   + C A N+ G   SR  T+
Sbjct: 58 ----ETSKFSCEAHNAKGVTTSRTGTV 80

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and cell proliferation. Length = 81

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 6  NEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
             VTL C   G P+  + W+K    L E++       RV   + +L    V      +D
Sbjct: 1  GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVS--SITLTISNV----TPED 54

Query: 65 GGVYWC 70
           G Y C
Sbjct: 55 SGTYTC 60

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGE--LVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDG 65
          VT  C+A G P+P I W K+G   L+ + +    S R  +  TG L    V    +  D 
Sbjct: 4  VTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNV----QRSDV 59

Query: 66 GVYWCLARNSVGTAVSRNATLQVAVVI 92
          G Y C   N  G+ +++ A L+V  VI
Sbjct: 60 GYYICQTLNVAGSILTK-AYLEVTDVI 85

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 41.1 bits (96), Expect = 5e-06
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
          V   C+A+G P+P I W K G     S+     + ++L +G+L   RV       D G Y
Sbjct: 5  VDFLCEAQGYPQPVIAWTKGG-----SQLSVDRRHLVLSSGTLRISRV----ALHDQGQY 55

Query: 69 WCLARNSVGT 78
           C A N VG+
Sbjct: 56 ECQAVNIVGS 65

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 15/74 (20%)

Query: 9  VTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVH--GKKEQDG 65
          + L C AEG P P + W + DG L                T  L   + +      E D 
Sbjct: 1  LVLECIAEGLPTPEVHWDRIDGPLSPNR------------TKKLNNNKTLQLDNVLESDD 48

Query: 66 GVYWCLARNSVGTA 79
          G Y C A NS G+A
Sbjct: 49 GEYVCTAENSEGSA 62

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
           T+ C AEG P P +EW   G +V  +++D     V      ++ L++ +   E    V 
Sbjct: 18 ATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTV-----DIYNLQLSNITSETQTTVT 72

Query: 69 WCLARNSVGTAVSRNATLQVAV 90
           C A N VG A   N ++QV V
Sbjct: 73 -CTAENPVGQA---NVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
          +   C+  GKP PT++W K+G++V  S         I+   +L  L +V    + D G Y
Sbjct: 2  IVFECEVTGKPTPTVKWVKNGDMVIPSDYFK-----IVKEHNLQVLGLV----KSDEGFY 52

Query: 69 WCLARNSVGTAVS 81
           C+A N VG   +
Sbjct: 53 QCIAENDVGNVQA 65

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 17 GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV 76
          G+P PT+ W KDG+ ++       S RV + T +     V+   +  D G Y    +N  
Sbjct: 10 GRPTPTVTWSKDGKPLKL------SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPA 63

Query: 77 GTAVSRNATLQVAV 90
          G      AT+ V V
Sbjct: 64 GEKS---ATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 7  EPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
          E V   C A G P P I W  + G + ++++    S+      G+L     +   KE D 
Sbjct: 2  ETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEG---GYGTL----TIRDVKESDQ 54

Query: 66 GVYWCLARNSVGT 78
          G Y C A N+ G 
Sbjct: 55 GAYTCEAINTRGM 67

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 38.7 bits (90), Expect = 7e-05
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 15/80 (18%)

Query: 5  KNEPVTLNCKAEGKPEPTIEW------YKDGELVETSKSDAKSQ-RVILPTGSLFFLRVV 57
          + E +TL C+AEG P P I W      + +G+     +   +   RV     S   L+ V
Sbjct: 15 ELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARV-----SSLTLKDV 69

Query: 58 HGKKEQDGGVYWCLARNSVG 77
             +  D G Y C A N +G
Sbjct: 70 ---QLTDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 7  EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
          E  TL C+A G P+P+I W  +G  +E + +D  S++V     ++ F +V    +E+   
Sbjct: 2  EDGTLICRANGNPKPSISWLTNGVPIEIAPTDP-SRKV--DGDTIIFSKV----QERSSA 54

Query: 67 VYWCLARNSVG 77
          VY C A N  G
Sbjct: 55 VYQCNASNEYG 65

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 7  EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
          E +TL C+A G P P+I W +      +S+       +++ + +      +   +  D G
Sbjct: 18 EQITLTCEASGDPIPSITW-RTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAG 76

Query: 67 VYWCLARNSVG 77
           Y C A N++G
Sbjct: 77 EYLCTASNTIG 87

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143236 cd05759, Ig2_KIRREL3-like, Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 24/79 (30%)

Query: 8  PVTLNCKAEG-KPEPTIEWYKDGELVE------TSKSDAK-----SQRVILPTGSLFFLR 55
          P  L C+A G KP   I W++DGE+++          D K     S   I P+       
Sbjct: 1  PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDH----- 55

Query: 56 VVHGKKEQDGGVYWCLARN 74
                   G  + C ARN
Sbjct: 56 -------DTGRTFTCRARN 67

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 82

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
          V + CK +  P+P   W K  EL+  +     S+  I   GSL  L +     + D G Y
Sbjct: 4  VIIECKPKAAPKPKFSWSKGTELLVNN-----SRISIWDDGSLEILNIT----KLDEGSY 54

Query: 69 WCLARNSVGTAVSRNATLQV 88
           C A N+ G A S    L V
Sbjct: 55 TCFAENNRGKANS-TGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 4  AKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKS 37
           +N  V   C +  GKP P I WY DG  +E   +
Sbjct: 12 GENLEVVATCSSAGGKPAPRITWYLDGRELEAITT 46

These domains belong to the immunoglobulin superfamily. Length = 89

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAK--SQRVILPTGSLFFLRVVHGKKEQDGG 66
          V   C A G P PT+ W K+G+     K + +    +V     SL    VV      D G
Sbjct: 12 VKFRCPAAGNPTPTMRWLKNGKEF---KQEHRIGGYKVRNQHWSLIMESVV----PSDKG 64

Query: 67 VYWCLARNSVGTAVSRNATLQVAV 90
           Y C+  N  G   S N T  + V
Sbjct: 65 NYTCVVENEYG---SINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + V++ E    +C  +G+P PT+ W ++G+++ +S    + Q       S F +  V   
Sbjct: 13 LTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS---QRHQITSTEYKSTFEISKV--- 66

Query: 61 KEQDGGVYWCLARNSVG 77
          +  D G Y  +  NS G
Sbjct: 67 QMSDEGNYTVVVENSEG 83

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 35.9 bits (83), Expect = 6e-04
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 12/75 (16%)

Query: 4  AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKE 62
           K + VTL C A G P P I+W K    + +S   + S  V+ +P               
Sbjct: 14 LKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQF----------- 62

Query: 63 QDGGVYWCLARNSVG 77
          +D G Y C A N  G
Sbjct: 63 EDEGTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 35.5 bits (82), Expect = 7e-04
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
          V L  K +  P P I+WYK+G+L+ + K+  K     L          +    E+D G Y
Sbjct: 1  VRLPVKVKAYPPPEIQWYKNGKLI-SEKNRTKKSGHSL---------TIKDVTEEDAGNY 50

Query: 69 WCLARNSVGTAVSRNATLQVAV 90
            +  N     + +  T  + V
Sbjct: 51 TVVLTNKQ-AKLEKRLTFTLVV 71

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFL-RVVHGKKEQDGGV 67
          V L C+  G P P I W K+ E +  +     + RV +   +  ++  ++ G  ++D G 
Sbjct: 1  VRLECRVSGVPHPQIFWKKENESLTHN-----TDRVSMHQDNCGYICLLIQGATKEDAGW 55

Query: 68 YWCLARNSVGTAVSRNATLQV 88
          Y   A+N  G  VS  A L V
Sbjct: 56 YTVSAKNEAGI-VSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
          V L  K    P P  +WYKDG+L+    S    Q           ++ V    E   G Y
Sbjct: 1  VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQ-----------IKDV---TEASAGTY 46

Query: 69 WCLARNSVGTAVSRNATLQVAV 90
            +  NS    + +  +L++ V
Sbjct: 47 TLVLWNSA-AGLEKRISLELIV 67

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67

>gnl|CDD|143238 cd05761, Ig2_Necl-1-4_like, Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 9  VTLNCKAEG-KPEPTIEWYKD-----GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
          V L C + G KP  TI W+K      G  ++    + K+  V   T SL F       +E
Sbjct: 2  VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTV---TSSLRF----QVDRE 54

Query: 63 QDGGVYWCLA 72
           DG    C  
Sbjct: 55 DDGAPIICRV 64

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.72
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.69
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.69
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.67
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.67
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.66
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.66
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.65
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.64
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.64
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.64
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.63
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.63
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.62
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.61
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.61
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.61
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.6
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.6
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.59
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.59
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.59
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.59
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.58
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.58
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.58
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.58
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.58
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.57
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.57
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.57
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.57
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.57
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.56
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.56
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.56
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.56
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.55
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.55
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.55
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.55
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.54
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.53
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.53
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.53
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.52
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.52
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.52
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.51
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.51
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.51
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.5
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.5
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.5
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.5
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.49
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.49
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.49
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.48
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.48
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.47
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.47
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.47
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.47
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.46
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.46
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.45
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.45
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.44
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.44
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.44
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.41
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.4
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.4
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.38
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.38
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.37
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.35
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.34
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.29
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.25
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.24
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.23
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.23
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.22
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.21
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.21
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.2
KOG3513|consensus	1051		99.19
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.19
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.18
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.18
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.16
KOG4221|consensus	1381		99.14
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.12
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.11
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.11
KOG4194|consensus	873		99.1
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.08
KOG3513|consensus	1051		99.04
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.03
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.01
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.01
smart00409	86	IG Immunoglobulin.	98.97
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.97
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.91
KOG4222|consensus	1281		98.89
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.87
PHA02785	326	IL-beta-binding protein; Provisional	98.87
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.85
PHA02826	227	IL-1 receptor-like protein; Provisional	98.84
PHA02785	326	IL-beta-binding protein; Provisional	98.82
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.82
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.79
KOG4222|consensus	1281		98.75
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.74
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.72
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.69
PHA02826	227	IL-1 receptor-like protein; Provisional	98.68
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.68
KOG4221|consensus	1381		98.66
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.66
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.66
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.65
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.65
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.64
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.58
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.54
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.51
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.5
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.49
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.45
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.41
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.4
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.38
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.37
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.35
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.34
KOG4194|consensus	873		98.33
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.32
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.29
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.27
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.26
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.25
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.25
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.24
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.24
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.24
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.23
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.2
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.14
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.03
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.03
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.03
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.03
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.98
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.93
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.91
smart00407	75	IGc1 Immunoglobulin C-Type.	97.82
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.8
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.78
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.77
PHA03376	221	BARF1; Provisional	97.72
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.67
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.61
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.51
smart00406	81	IGv Immunoglobulin V-Type.	97.44
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.43
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.42
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.4
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.4
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.37
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.28
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.22
KOG3515|consensus	741		97.21
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.13
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.13
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.13
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.04
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.04
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.99
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.99
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.84
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.69
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.61
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.48
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.27
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.0
KOG1480|consensus	909		95.97
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	95.84
PHA02633	63	hypothetical protein; Provisional	95.45
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.43
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	94.26
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.22
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	93.28
PHA03042	286	CD47-like protein; Provisional	92.13
KOG4597|consensus	560		91.68
KOG3515|consensus	741		90.67
PHA02982	251	hypothetical protein; Provisional	87.26
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	85.35
PHA02865	338	MHC-like TNF binding protein; Provisional	84.5
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	83.38
PHA03052	69	Hypothetical protein; Provisional	82.98

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.72  E-value=2.5e-16  Score=86.34  Aligned_cols=86  Identities=21%  Similarity=0.198  Sum_probs=65.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|+|..+...     .......... .....|..+...|.|.|.|.+.|..|.. .
T Consensus        11 ~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~-----~~~~~~~~~~-~s~L~I~~~~~~D~G~Ytc~a~N~~G~~-~   83 (98)
T cd05762          11 KVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG-----EGIKIENTEN-SSKLTITEGQQEHCGCYTLEVENKLGSR-Q   83 (98)
T ss_pred             EEECCCEEEEEEEEcccCCCceEEEECCEEecCC-----CcEEEEecCC-eeEEEECCCChhhCEEEEEEEEcCCCce-e
Confidence            5678999999999999999999999999988632     1122222111 1233467779999999999999999998 5


Q ss_pred             eeEEEEEEeeeee
Q psy8666          82 RNATLQVAVVIFF   94 (124)
Q Consensus        82 ~~~~l~v~~~~~~   94 (124)
                      ..+.|.|...|..
T Consensus        84 ~~~~l~V~~~P~p   96 (98)
T cd05762          84 AQVNLTVVDKPDP   96 (98)
T ss_pred             EEEEEEEecCCCC
Confidence            6888988877643

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.69  E-value=1.3e-15  Score=81.59  Aligned_cols=81  Identities=21%  Similarity=0.407  Sum_probs=59.6

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      +.+..|+.+.|.|.+.|.|.|.+.|+|++..+....    .......... .....|..+..+|.|.|.|.+.|..|.. 
T Consensus         5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~----~r~~~~~~~~-~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-   78 (86)
T cd05894           5 IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETE----GRVRVESYKD-LSSFVIEGAEREDEGVYTITVTNPVGED-   78 (86)
T ss_pred             EEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCC----CeEEEEEcCC-eEEEEECCCccCcCEEEEEEEEeCCCcE-
Confidence            357889999999999999999999999998775321    1122222111 2334567779999999999999999987 


Q ss_pred             eeeEEEE
Q psy8666          81 SRNATLQ   87 (124)
Q Consensus        81 ~~~~~l~   87 (124)
                      ...+.|.
T Consensus        79 ~~~~~l~   85 (86)
T cd05894          79 HASLFVK   85 (86)
T ss_pred             EEEEEEE
Confidence            4555554

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.69  E-value=6e-16  Score=80.71  Aligned_cols=73  Identities=32%  Similarity=0.588  Sum_probs=55.4

Q ss_pred             cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeE
Q psy8666           5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNA   84 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   84 (124)
                      +|+.+.|.|.+.|.|.|.+.|+|++..+...     ........+.+.+    ..++..|.|.|.|.+.|..|.. ...+
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~-----~~~~~~~~~~L~I----~~v~~~D~G~Y~C~A~N~~G~~-~~~~   70 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD-----RRHLVLSSGTLRI----SRVALHDQGQYECQAVNIVGSQ-RTVA   70 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCC-----CCeEEccCCeEEE----eeCCHHhCEEEEEEEEeCCCce-eEEE
Confidence            5889999999999999999999999876532     1222334444543    4449999999999999999987 4455


Q ss_pred             EEE
Q psy8666          85 TLQ   87 (124)
Q Consensus        85 ~l~   87 (124)
                      .|.
T Consensus        71 ~L~   73 (74)
T cd05745          71 QLT   73 (74)
T ss_pred             EEe
Confidence            554

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.67  E-value=2.8e-15  Score=81.34  Aligned_cols=79  Identities=20%  Similarity=0.473  Sum_probs=57.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|++..+...     ...... ..+.. ....|..++.+|.|.|.|.+.|..|.. 
T Consensus        12 ~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~-----~~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~-   84 (92)
T cd05737          12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS-----DHYNVKVEQGKY-ASLTIKGVSSEDSGKYGIVVKNKYGGE-   84 (92)
T ss_pred             EEeCCCcEEEEEEEEecCCCeEEEEECCEECccC-----CCEEEEEcCCCE-EEEEEccCChhhCEEEEEEEEECCCcc-
Confidence            5778999999999999999999999999877532     111121 21222 234467779999999999999999987 


Q ss_pred             eeeEEEE
Q psy8666          81 SRNATLQ   87 (124)
Q Consensus        81 ~~~~~l~   87 (124)
                      ...+.+.
T Consensus        85 ~~~~~v~   91 (92)
T cd05737          85 TVDVTVS   91 (92)
T ss_pred             eEEEEEe
Confidence            4444443

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.67  E-value=2.3e-15  Score=82.83  Aligned_cols=83  Identities=25%  Similarity=0.266  Sum_probs=60.0

Q ss_pred             EEecCCCEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEcc---CCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILP---TGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .+..|+.+.|.|.+.| .|.|.+.|+|+|..+....    .......   .........|..++.+|.|.|+|.+.|..|
T Consensus        14 ~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~----~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          14 FVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKL----TEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             EEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCc----ceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            5678999999999999 8999999999998876321    1111111   111122334556699999999999999999


Q ss_pred             cceeeeEEEEEE
Q psy8666          78 TAVSRNATLQVA   89 (124)
Q Consensus        78 ~~~~~~~~l~v~   89 (124)
                      .. +..+.|.|.
T Consensus        90 ~~-~~t~~L~V~  100 (101)
T cd04975          90 SK-SLTFELYVN  100 (101)
T ss_pred             cE-EEEEEEEEE
Confidence            87 667777764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.66  E-value=5.3e-15  Score=81.15  Aligned_cols=87  Identities=62%  Similarity=1.099  Sum_probs=61.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEc-CCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH-GKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|+|..+................+.+....++. .++.+|.|.|.|.+.|..|...
T Consensus        12 ~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~   91 (100)
T cd07693          12 IVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV   91 (100)
T ss_pred             EEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccccee
Confidence            467899999999999999999999999988764211111222333445444433322 2368999999999999999865


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      +..+.|.|
T Consensus        92 s~~~~l~v   99 (100)
T cd07693          92 SRNASLEV   99 (100)
T ss_pred             cceEEEEe
Confidence            76776665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.66  E-value=3.3e-15  Score=77.98  Aligned_cols=75  Identities=27%  Similarity=0.439  Sum_probs=53.3

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      +.|.|.+.|.|.|.+.|+|++..+....    .+..............|..++.+|.|.|.|.+.|..|.. +....|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~----~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNT----DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCC----CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEeC
Confidence            4689999999999999999998775321    122222222221234567779999999999999999988 45666543

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.65  E-value=1.7e-15  Score=78.71  Aligned_cols=72  Identities=32%  Similarity=0.563  Sum_probs=54.7

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      |+.+.|.|.+.|.|.|.+.|+|++..+...     ........+.+.    |..++.+|.|.|.|.+.|..|.. .....
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~-----~r~~~~~~g~L~----I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~   70 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN-----SRISIWDDGSLE----ILNITKLDEGSYTCFAENNRGKA-NSTGV   70 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccC-----CCEEEcCCCEEE----ECcCChhHCEEEEEEEECCCCce-eEEEE
Confidence            678999999999999999999999865432     233334455543    45669999999999999999988 44555


Q ss_pred             EE
Q psy8666          86 LQ   87 (124)
Q Consensus        86 l~   87 (124)
                      |.
T Consensus        71 l~   72 (73)
T cd05852          71 LS   72 (73)
T ss_pred             EE
Confidence            54

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.64  E-value=3.8e-15  Score=80.16  Aligned_cols=76  Identities=30%  Similarity=0.479  Sum_probs=57.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|++..+...     .. .......+    .|.+++.+|.|.|.|.+.|..|.. .
T Consensus        12 ~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~-----~~-~~~~~~~L----~I~~v~~~D~G~Y~C~A~N~~G~~-~   80 (88)
T cd05851          12 YALKGQNVTLECFALGNPVPVIRWRKILEPMPAT-----AE-ISMSGAVL----KIFNIQPEDEGTYECEAENIKGKD-K   80 (88)
T ss_pred             EEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC-----CE-EecCCCEE----EECcCChhhCEEEEEEEEcCCCce-E
Confidence            4678999999999999999999999998765421     11 11222333    345669999999999999999987 5


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ....|.|
T Consensus        81 ~~~~l~V   87 (88)
T cd05851          81 HQARVYV   87 (88)
T ss_pred             EEEEEEE
Confidence            5666655

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.64  E-value=4.5e-15  Score=81.69  Aligned_cols=83  Identities=23%  Similarity=0.287  Sum_probs=58.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEcc----CCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILP----TGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|+|..+....    .......    .........|..++.+|.|.|.|.+.|..|
T Consensus        14 ~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~----~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g   89 (101)
T cd05859          14 FANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENL----TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA   89 (101)
T ss_pred             EEecCCcEEEEEEEEEeCCCceEEEECCEECcCCc----ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence            35678899999999999999999999999876431    1111101    011112234455699999999999999998


Q ss_pred             cceeeeEEEEEE
Q psy8666          78 TAVSRNATLQVA   89 (124)
Q Consensus        78 ~~~~~~~~l~v~   89 (124)
                      .. +..+.|.|.
T Consensus        90 ~~-~~t~~l~V~  100 (101)
T cd05859          90 VK-SYTFALQIQ  100 (101)
T ss_pred             eE-EEEEEEEEE
Confidence            87 567777664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.64  E-value=7.9e-15  Score=76.56  Aligned_cols=75  Identities=28%  Similarity=0.518  Sum_probs=53.3

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      +.|.|.+.|.|.|.+.|+|++..+...    .................|..++.+|.|.|.|.+.|..|.. +....|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHN----TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCC----CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEeC
Confidence            468999999999999999999877532    1122222222222234567789999999999999999988 55666543

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.63  E-value=2.4e-14  Score=77.02  Aligned_cols=83  Identities=18%  Similarity=0.289  Sum_probs=61.6

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc---cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL---PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      |+.+.|.|.+.|.|.+.+.|+|++..+...    ...+...   ..........|..+..+|.|.|.|.+.|..|.. ..
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~----~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~   75 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPE----MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RG   75 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCC----CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eE
Confidence            788999999999999999999999866421    1111111   122333445567778999999999999999998 67


Q ss_pred             eEEEEEEeeee
Q psy8666          83 NATLQVAVVIF   93 (124)
Q Consensus        83 ~~~l~v~~~~~   93 (124)
                      .+.|.|..+|.
T Consensus        76 ~~~L~V~~~P~   86 (88)
T cd05735          76 IIQLTVQEPPD   86 (88)
T ss_pred             EEEEEEeCCCC
Confidence            88888877653

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.63  E-value=1.1e-14  Score=75.31  Aligned_cols=70  Identities=37%  Similarity=0.685  Sum_probs=51.8

Q ss_pred             CEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666           8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ   87 (124)
Q Consensus         8 ~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~   87 (124)
                      .+.|.|.+.|.|.|.++|+|++..+...     ........+.+.+.    .++.+|.|.|.|.+.|..|.. ...+.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~-----~~~~~~~~~~l~i~----~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPS-----DYFKIVKEHNLQVL----GLVKSDEGFYQCIAENDVGNV-QASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCC-----CCEEEEecCCEEEE----cCCcccCEEEEEEEEcCCCEE-EEEEEEE
Confidence            3689999999999999999999876532     12223334455433    458999999999999999987 4555554

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.62  E-value=1.1e-14  Score=76.31  Aligned_cols=75  Identities=33%  Similarity=0.629  Sum_probs=55.1

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      |+.+.|.|.+.|.|.|.++|+|+|..+.....   ........+.+    .|..++.+|.|.|.|.+.|..|.. ...+.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~---~~~~~~~~~~L----~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~   72 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDP---DPRRHVSSGAL----ILTDVQPSDTAVYQCEARNRHGNL-LANAH   72 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCC---CceEEeeCCEE----EECCCChhhCEEEEEEEECCCCeE-EEEEE
Confidence            67899999999999999999999987653211   11122233444    356669999999999999999987 44566


Q ss_pred             EEE
Q psy8666          86 LQV   88 (124)
Q Consensus        86 l~v   88 (124)
                      |.|
T Consensus        73 l~V   75 (76)
T cd05867          73 VHV   75 (76)
T ss_pred             EEE
Confidence            554

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.61  E-value=1.4e-14  Score=78.35  Aligned_cols=76  Identities=32%  Similarity=0.501  Sum_probs=58.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.|. .|.+.|+|++..+...      ..... ....+    .|..++.+|.|.|.|.+.|..|...
T Consensus        14 ~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~------~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~G~~~   82 (91)
T cd05740          14 PPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP------RLQLSNDNRTL----TFNNVTRSDTGHYQCEASNEVSNMT   82 (91)
T ss_pred             ccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC------CEEEeCCCCEE----EECcCChhhCEEEEEEEEcCCCCEE
Confidence            46789999999999999 9999999999876521      11122 22333    3456699999999999999999887


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      +..+.|.|
T Consensus        83 S~~~~L~V   90 (91)
T cd05740          83 SDPYILNV   90 (91)
T ss_pred             eeeEEEEe
Confidence            77777776

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.61  E-value=3.2e-14  Score=74.31  Aligned_cols=74  Identities=26%  Similarity=0.432  Sum_probs=52.5

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ   87 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~   87 (124)
                      +.|.|.+.|.|.|.+.|+|++..+....    ................|..++.+|.|.|.|.+.|..|.. +....|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~----~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNT----DRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCC----CcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence            4689999999999999999998775321    122222222212234567779999999999999999987 4566654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.61  E-value=1.6e-14  Score=75.62  Aligned_cols=75  Identities=29%  Similarity=0.530  Sum_probs=54.8

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      |+.+.|.|.+.|.|.|.+.|+|+|..+.....   ..........+    .+..++..|.|.|.|.+.|..|.. ...+.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~---~~~~~~~~~~l----~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~   72 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPT---DPSRKVDGDTI----IFSKVQERSSAVYQCNASNEYGYL-LANAF   72 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCC---CceEEecCCEE----EECCCCHhhCEEEEEEEEcCCCEE-EEEEE
Confidence            67899999999999999999999987753211   11111222222    345668999999999999999988 55666


Q ss_pred             EEE
Q psy8666          86 LQV   88 (124)
Q Consensus        86 l~v   88 (124)
                      |.|
T Consensus        73 l~v   75 (76)
T cd05868          73 VNV   75 (76)
T ss_pred             EEe
Confidence            665

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.60  E-value=2.8e-14  Score=76.31  Aligned_cols=75  Identities=28%  Similarity=0.557  Sum_probs=56.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|++..+...     .. .....+.+.+    ..+..+|.|.|.|.+.|..|.. .
T Consensus        10 ~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~-----~~-~~~~~~~L~i----~~~~~~D~G~Y~C~a~N~~G~~-~   78 (85)
T cd05728          10 EADIGSSLRWECKASGNPRPAYRWLKNGQPLASE-----NR-IEVEAGDLRI----TKLSLSDSGMYQCVAENKHGTI-Y   78 (85)
T ss_pred             EEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC-----Ce-EEEeCCEEEE----eeCCHHHCEEEEEEEECCCCeE-E
Confidence            4678999999999999999999999999876531     11 2223444443    4448999999999999999987 4


Q ss_pred             eeEEEE
Q psy8666          82 RNATLQ   87 (124)
Q Consensus        82 ~~~~l~   87 (124)
                      ..+.|.
T Consensus        79 ~~~~l~   84 (85)
T cd05728          79 ASAELA   84 (85)
T ss_pred             EEEEEE
Confidence            455554

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.60  E-value=4.7e-14  Score=76.18  Aligned_cols=79  Identities=25%  Similarity=0.422  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|++++..+...     .......... .....|..++..|.|.|.|.+.|..|.. .
T Consensus        11 ~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~-----~~~~~~~~~~-~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~   83 (90)
T cd04972          11 VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT-----RTDTLETTVD-IYNLQLSNITSETQTTVTCTAENPVGQA-N   83 (90)
T ss_pred             EEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC-----ccEEEEecCC-EEEEEEecCCcccCEEEEEEEECCCCce-e
Confidence            3678999999999999999999999999876532     1111111111 1223456668999999999999999987 4


Q ss_pred             eeEEEE
Q psy8666          82 RNATLQ   87 (124)
Q Consensus        82 ~~~~l~   87 (124)
                      ..+.|.
T Consensus        84 ~~~~L~   89 (90)
T cd04972          84 VSVQVT   89 (90)
T ss_pred             EEEEEe
Confidence            455554

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.59  E-value=8.9e-14  Score=74.32  Aligned_cols=83  Identities=27%  Similarity=0.317  Sum_probs=57.0

Q ss_pred             CCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeE
Q psy8666           7 EPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNA   84 (124)
Q Consensus         7 ~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   84 (124)
                      +++.|.|.+.|.|.|  .+.|+|++..+.....  .................|.+++..|.|.|.|.+.|..|.. +..+
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~   77 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKP--NGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASA   77 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCC--CCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEE
Confidence            468999999999987  5799999987753210  1111111111111123456679999999999999999988 6788


Q ss_pred             EEEEEeee
Q psy8666          85 TLQVAVVI   92 (124)
Q Consensus        85 ~l~v~~~~   92 (124)
                      .|.|..+|
T Consensus        78 ~L~V~~~P   85 (85)
T cd05854          78 TLVVRGPP   85 (85)
T ss_pred             EEEEECCC
Confidence            88887754

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.59  E-value=2.5e-14  Score=74.37  Aligned_cols=72  Identities=38%  Similarity=0.652  Sum_probs=54.4

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      |+.+.|.|.+.+.|.|.++|+|++..+...     ........+.+.    |.+++..|.|.|.|.+.|..|.. ...+.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~-----~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~   70 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNS-----SRICIWPDGSLE----ILNVTKSDEGKYTCFAENFFGKA-NSTGS   70 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccC-----CCEEECCCCeEE----EccCChhHCEEEEEEEECCCCce-EEEEE
Confidence            678999999999999999999999876532     222233444443    45669999999999999999987 44555


Q ss_pred             EE
Q psy8666          86 LQ   87 (124)
Q Consensus        86 l~   87 (124)
                      |.
T Consensus        71 l~   72 (73)
T cd04969          71 LS   72 (73)
T ss_pred             EE
Confidence            54

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.59  E-value=5.8e-14  Score=76.12  Aligned_cols=80  Identities=23%  Similarity=0.480  Sum_probs=57.0

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      +.+.+|+.+.|.|.+.+.|.|.+.|+|++..+....   .... ....+.. ....|..++.+|.|.|.|.+.|..|.. 
T Consensus        11 v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~---~~~~-~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~N~~G~~-   84 (92)
T cd05891          11 VTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSE---HYSV-KLEQGKY-ASLTIKGVTSEDSGKYSINVKNKYGGE-   84 (92)
T ss_pred             EEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCC---CEEE-EEcCCCE-EEEEECCCChhhCEEEEEEEEeCCCce-
Confidence            357889999999999999999999999998765321   1111 1122221 234567779999999999999999887 


Q ss_pred             eeeEEE
Q psy8666          81 SRNATL   86 (124)
Q Consensus        81 ~~~~~l   86 (124)
                      ...+.|
T Consensus        85 ~~~~~v   90 (92)
T cd05891          85 TVDVTV   90 (92)
T ss_pred             eeEEEE
Confidence            334443

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.59  E-value=3.2e-14  Score=76.00  Aligned_cols=80  Identities=23%  Similarity=0.461  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|+|..+.....  ........ . . ....|..+..+|.|.|.|.+.|..|.. .
T Consensus         5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~--~~~~~~~~-~-~-~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~   78 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHR--IGGYKVRN-Q-H-WSLIMESVVPSDKGNYTCVVENEYGSI-N   78 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCc--eeeeEEeC-C-c-eEEEEccCCcccCEEEEEEEEeCCCEE-E
Confidence            467899999999999999999999999988753211  00111111 1 1 112345668999999999999999987 4


Q ss_pred             eeEEEE
Q psy8666          82 RNATLQ   87 (124)
Q Consensus        82 ~~~~l~   87 (124)
                      ..+.|.
T Consensus        79 ~~~~l~   84 (85)
T cd05857          79 HTYHLD   84 (85)
T ss_pred             EEEEEE
Confidence            566654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.58  E-value=6.1e-14  Score=73.05  Aligned_cols=73  Identities=29%  Similarity=0.457  Sum_probs=52.5

Q ss_pred             CEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666           8 PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ   87 (124)
Q Consensus         8 ~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~   87 (124)
                      .+.|.|.+.|.|.|.+.|+|+|..+...     .......... .....|..+...|.|.|.|.+.|..|.. +..+.|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~-----~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   73 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLS-----GRVQIETTAS-STSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVK   73 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCC-----CeEEEEECCC-eEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEE
Confidence            3689999999999999999999887422     1222222221 2233467779999999999999999987 5555554

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.58  E-value=1.1e-13  Score=75.60  Aligned_cols=84  Identities=24%  Similarity=0.399  Sum_probs=57.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+.|.|.+.|++++..+................ .......|..++..|.|.|.|.+.|..|.. .
T Consensus        12 ~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~   89 (96)
T cd05732          12 TAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH-ARVSSLTLKDVQLTDAGRYDCEASNRIGGD-Q   89 (96)
T ss_pred             eEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC-ccEEEEEECcCCcCcCEEeEEEEEeCCCCc-E
Confidence            46789999999999999999999999885543211111112222111 122334567779999999999999999987 4


Q ss_pred             eeEEEE
Q psy8666          82 RNATLQ   87 (124)
Q Consensus        82 ~~~~l~   87 (124)
                      ..+.|.
T Consensus        90 ~s~~l~   95 (96)
T cd05732          90 QSMYLE   95 (96)
T ss_pred             EEEEEe
Confidence            555554

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.58  E-value=2.3e-14  Score=73.08  Aligned_cols=65  Identities=29%  Similarity=0.524  Sum_probs=48.7

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      +.|.|.+.|.|.|.++|+|+|+.+...          .....+    .|..+..+|.|.|.|.+.|..|.. ...+.+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----------~~~~~L----~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK----------HSQHSL----QIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc----------CCcCEE----EECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence            368999999999999999999877521          112233    346669999999999999999876 34555544

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.58  E-value=7.7e-14  Score=74.63  Aligned_cols=78  Identities=36%  Similarity=0.639  Sum_probs=57.3

Q ss_pred             EEecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+++.|.|.+ .+.|.|.+.|+|++..+....    ........+.+.+    ..++..|.|.|.|.+.|..|...
T Consensus         7 ~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~----~~~~~~~~~~L~I----~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           7 QVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDN----ERVRIVDDGNLLI----AEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             EEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCC----CCEEEccCCEEEE----eECCcccCEEEEEEEEeccCcee
Confidence            56789999999997 688999999999998765321    1222233444544    44489999999999999999875


Q ss_pred             eeeEEEE
Q psy8666          81 SRNATLQ   87 (124)
Q Consensus        81 ~~~~~l~   87 (124)
                      +....|.
T Consensus        79 s~~~~l~   85 (86)
T cd05724          79 SAAARLS   85 (86)
T ss_pred             eeeEEEE
Confidence            6555544

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.58  E-value=1.3e-13  Score=75.45  Aligned_cols=82  Identities=24%  Similarity=0.445  Sum_probs=55.7

Q ss_pred             ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeee
Q psy8666           4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRN   83 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~   83 (124)
                      ..|+.+.|.|.+.|.|.|.++|++++..+................. ......|..++.+|.|.|.|.+.|..|.. ...
T Consensus        15 ~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~   92 (97)
T cd05869          15 ELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA-RVSSLTLKYIQYTDAGEYLCTASNTIGQD-SQS   92 (97)
T ss_pred             EcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCc-cEEEEEEecCccCcCEEEEEEEecCCCCe-eEE
Confidence            3579999999999999999999998876542211111111111111 11234556778999999999999999988 455


Q ss_pred             EEEE
Q psy8666          84 ATLQ   87 (124)
Q Consensus        84 ~~l~   87 (124)
                      +.|.
T Consensus        93 ~~l~   96 (97)
T cd05869          93 MYLE   96 (97)
T ss_pred             EEEE
Confidence            5554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.57  E-value=1e-13  Score=75.20  Aligned_cols=78  Identities=26%  Similarity=0.482  Sum_probs=55.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...     .......... .....|..++.+|.|.|.|.+.|..|.. .
T Consensus        14 ~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~-----~~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~   86 (92)
T cd05747          14 TVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS-----QRHQITSTEY-KSTFEISKVQMSDEGNYTVVVENSEGKQ-E   86 (92)
T ss_pred             EEeCCCcEEEEEEEeecCCCEEEEEECCEECCCC-----CcEEEEEcCC-eeEEEECCCCcccCEeEEEEEEcCCCCE-e
Confidence            4678999999999999999999999999876532     1111111111 1223456669999999999999999987 4


Q ss_pred             eeEEE
Q psy8666          82 RNATL   86 (124)
Q Consensus        82 ~~~~l   86 (124)
                      ..+.|
T Consensus        87 ~~~~l   91 (92)
T cd05747          87 AQFTL   91 (92)
T ss_pred             EEEEe
Confidence            44443

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.57  E-value=5.3e-14  Score=73.59  Aligned_cols=75  Identities=35%  Similarity=0.559  Sum_probs=54.7

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      |+.+.|.|.+.|.|.|.+.|+++|..+.....   ..........+    .|..++.+|.|.|.|.+.|..|.. ...+.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~---~~~~~~~~~~L----~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~   72 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPP---DPRRRVDGGTL----ILSNVQPNDTAVYQCNASNVHGYL-LANAF   72 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCC---cceEEccCCEE----EECCCChhhCEEEEEEEEccCCeE-EEeEE
Confidence            67899999999999999999999987764211   11122223333    345668999999999999999887 45666


Q ss_pred             EEE
Q psy8666          86 LQV   88 (124)
Q Consensus        86 l~v   88 (124)
                      |.|
T Consensus        73 l~V   75 (76)
T cd04978          73 VHV   75 (76)
T ss_pred             EEE
Confidence            654

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.57  E-value=3.4e-14  Score=74.05  Aligned_cols=73  Identities=40%  Similarity=0.659  Sum_probs=53.3

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      +.|.|.+.|.|.|.++|+|++..+...   ..........+.+    .|..++..|.|.|.|.+.|..|...+....|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~---~~~~~~~~~~g~L----~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTT---SNGRIKQLRSGAL----QIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccC---CCCCEEEcCCcEE----EECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            478999999999999999999876521   1122223333433    356668999999999999999987666666665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.57  E-value=1.6e-13  Score=75.28  Aligned_cols=84  Identities=25%  Similarity=0.413  Sum_probs=55.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|+  +..+.......+........... ....|..++.+|.|.|.|.+.|..|..
T Consensus        12 ~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~-~~L~I~~v~~~D~G~Y~C~A~N~~G~~   90 (98)
T cd05870          12 TTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGE-SSLHIKDVKLSDSGRYDCEAASRIGGH   90 (98)
T ss_pred             EEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCe-eEEEEeeCCcCCCEEEEEEEeccCCcc
Confidence            567899999999999999999999994  43332111111112222111111 123456669999999999999999987


Q ss_pred             eeeeEEEE
Q psy8666          80 VSRNATLQ   87 (124)
Q Consensus        80 ~~~~~~l~   87 (124)
                       ...+.|.
T Consensus        91 -~~~~~l~   97 (98)
T cd05870          91 -QKSMYLD   97 (98)
T ss_pred             -eeEEEEe
Confidence             4455554

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.57  E-value=1.1e-13  Score=75.49  Aligned_cols=81  Identities=32%  Similarity=0.546  Sum_probs=59.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+++|..+...    .........+..   ..|..++..|.|.|.|.+.|..|.. .
T Consensus        14 ~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~----~~~~~~~~~~~~---L~I~~v~~~D~G~Y~C~a~N~~G~~-~   85 (95)
T cd05730          14 TANLGQSVTLACDADGFPEPTMTWTKDGEPIESG----EEKYSFNEDGSE---MTILDVDKLDEAEYTCIAENKAGEQ-E   85 (95)
T ss_pred             EEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC----CCEEEEeCCCCE---EEECCCChhhCEEEEEEEEcCCCeE-E
Confidence            4678999999999999999999999999876532    112222222221   2345668999999999999999987 5


Q ss_pred             eeEEEEEEe
Q psy8666          82 RNATLQVAV   90 (124)
Q Consensus        82 ~~~~l~v~~   90 (124)
                      ..+.|.|..
T Consensus        86 ~~~~L~V~~   94 (95)
T cd05730          86 AEIHLKVFA   94 (95)
T ss_pred             EEEEEEEEe
Confidence            677777653

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.56  E-value=1.7e-13  Score=74.69  Aligned_cols=83  Identities=47%  Similarity=0.845  Sum_probs=58.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcC-CCccCCeEEEEEeEeC-Cccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG-KKEQDGGVYWCLARNS-VGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~d~g~y~C~~~~~-~~~~   79 (124)
                      .+.+|+++.|.|.+.+.|.|.++|+|+|..+....   .........+.+.+...... .+..|.|.|.|.+.|. .|..
T Consensus        10 ~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~   86 (95)
T cd05722          10 VAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVS---DERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI   86 (95)
T ss_pred             EEcCCCCEEEeeecccCCCCEEEEEECCeECcccc---CcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence            35679999999999999999999999998776421   11223334455544433111 1578999999999999 9887


Q ss_pred             eeeeEEEE
Q psy8666          80 VSRNATLQ   87 (124)
Q Consensus        80 ~~~~~~l~   87 (124)
                      .+..+.|.
T Consensus        87 ~s~~~~l~   94 (95)
T cd05722          87 VSRTARLT   94 (95)
T ss_pred             EEeeeEEe
Confidence            66666654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.56  E-value=8.3e-14  Score=74.90  Aligned_cols=76  Identities=29%  Similarity=0.478  Sum_probs=56.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|++..+...     .. .....+.+    .|..++.+|.|.|.|.+.|..|.. .
T Consensus        12 ~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~-----~~-~~~~~~~L----~i~~v~~~D~G~Y~C~a~N~~G~~-~   80 (88)
T cd04968          12 YALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS-----AE-ISMSGAVL----KIPNIQFEDEGTYECEAENIKGKD-T   80 (88)
T ss_pred             EEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc-----cE-EEEeCCEE----EECCCCcccCEEEEEEEEECCCcE-E
Confidence            4678999999999999999999999987654321     11 11233333    345669999999999999999987 4


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ....|.|
T Consensus        81 ~~~~l~V   87 (88)
T cd04968          81 HQGRIYV   87 (88)
T ss_pred             EEEEEEE
Confidence            5666654

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.56  E-value=1.7e-13  Score=71.94  Aligned_cols=75  Identities=17%  Similarity=0.427  Sum_probs=50.5

Q ss_pred             EEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666          11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ   87 (124)
Q Consensus        11 l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~   87 (124)
                      +.|.+.|.|.|.++|+|+|..+....+. .................|..+...|.|.|.|.|.|..|+. ...+.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYI-CTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcce-eeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEee
Confidence            6789999999999999999988643110 0011111111222334567778999999999999999987 4454443

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.56  E-value=6.3e-14  Score=72.45  Aligned_cols=70  Identities=30%  Similarity=0.522  Sum_probs=50.6

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      +.|.|.+.|.|.|.+.|+|++..+...     ........+.+.    |..++..|.|.|.|.+.|..|.. ...+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~-----~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPN-----RTKKLNNNKTLQ----LDNVLESDDGEYVCTAENSEGSA-RHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCC-----ceeEEcCCCEEE----EcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence            368999999999999999998765421     111222334443    44558999999999999999987 45666655

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.55  E-value=3.2e-13  Score=72.76  Aligned_cols=80  Identities=35%  Similarity=0.647  Sum_probs=59.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|++++..+...     ........... ....|.+++..|.|.|.|.+.|..|.. .
T Consensus        11 ~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~~n~~g~~-~   83 (90)
T PF07679_consen   11 TVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSS-----QRYQIESDGGS-SSLTIKNVTREDAGTYTCVASNSSGEA-T   83 (90)
T ss_dssp             EEETTSEEEEEEEEEESSSSEEEEEETTEEEESS-----SSEEEEEETTE-EEEEESSESGGGSEEEEEEEEETTEEE-E
T ss_pred             EEeCCCEEEEEEEEEeCCCCcccccccccceeee-----eeeeeecccce-eEEccCCCChhhCEEEEEEEEECCCEE-E
Confidence            5778999999999999999999999999988752     12222222222 233457779999999999999998877 5


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        84 ~~~~l~V   90 (90)
T PF07679_consen   84 ASVNLTV   90 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            5666554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.55  E-value=1e-13  Score=75.46  Aligned_cols=74  Identities=39%  Similarity=0.739  Sum_probs=52.7

Q ss_pred             cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCC-CccCCeEEEEEeEeCCccceeee
Q psy8666           5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK-KEQDGGVYWCLARNSVGTAVSRN   83 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~d~g~y~C~~~~~~~~~~~~~   83 (124)
                      +|+.+.|.|.+.|.|.|.++|+|+|..+....    ........+.+.    |..+ ...|.|.|.|.+.|..|...+..
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~----~~~~~~~~g~L~----i~~~~~~~D~G~Y~C~A~N~~G~~~S~~   89 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTES----DYRYSLIDGNLI----ISNPSEVKDSGRYQCLATNSIGSILSRE   89 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCC----CceEEeeCCeEE----EccCCccCcCEEEEEEEEcCCCeEEecc
Confidence            47889999999999999999999998775321    111222334443    3333 46899999999999999875554


Q ss_pred             EEE
Q psy8666          84 ATL   86 (124)
Q Consensus        84 ~~l   86 (124)
                      +.|
T Consensus        90 ~~l   92 (94)
T cd05848          90 ALL   92 (94)
T ss_pred             EEE
Confidence            443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.55  E-value=6.7e-14  Score=72.04  Aligned_cols=59  Identities=25%  Similarity=0.485  Sum_probs=45.7

Q ss_pred             EEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666          10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus        10 ~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .|.|.+.|.|.|.+.|+|+|..+...     ..  ......+    .|..+..+|.|.|.|.+.|..|..
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~~-----~~--~~~~~~L----~I~~v~~~D~G~YtC~a~N~~G~~   60 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVLN-----HT--FKRGVHL----TIYEVTEKDAGNYTVVLTNPITKE   60 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCC-----CE--EccCCEE----EECcCCHHHCEEEEEEEEECCCce
Confidence            68999999999999999999987632     11  1122223    456669999999999999999876

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.55  E-value=9.6e-14  Score=71.76  Aligned_cols=69  Identities=29%  Similarity=0.528  Sum_probs=50.2

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      +.|.|.+.|.|.|.+.|+|+|..+...      .........+    .|.++...|.|.|.|.+.|..|.. ...+.+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~------~~~~~~~~~L----~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK------NRTKKSGHSL----TIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC------CEEEcCCCEE----EECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence            368999999999999999999887632      1222333333    345669999999999999999876 34454443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.54  E-value=3.8e-13  Score=73.38  Aligned_cols=82  Identities=16%  Similarity=0.417  Sum_probs=54.9

Q ss_pred             EEecCCCEEEEEeeeccCC-CeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC-cc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE-PTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV-GT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~-p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~-~~   78 (124)
                      .+..|+.+.|.|.+.|.|. |.+.|++ ++..+...    .................|..++.+|.|.|.|.+.|.. |.
T Consensus        11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~----~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~   86 (96)
T cd05865          11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPN----QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE   86 (96)
T ss_pred             EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcccc----CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence            4667999999999999985 7999998 67654421    0121111111112233456679999999999999997 55


Q ss_pred             ceeeeEEEEE
Q psy8666          79 AVSRNATLQV   88 (124)
Q Consensus        79 ~~~~~~~l~v   88 (124)
                      . ...+.|.|
T Consensus        87 ~-~~s~~l~v   95 (96)
T cd05865          87 S-EATVNVKI   95 (96)
T ss_pred             E-EEEEEEEE
Confidence            5 55666554

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.53  E-value=3e-13  Score=73.04  Aligned_cols=81  Identities=31%  Similarity=0.505  Sum_probs=57.2

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccC---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSK---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      |+.+.|.|.+.+.|.|.+.|+|++.......   ............+.+.    |.+++.+|.|.|.|.+.|..|.. ..
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~-~~   75 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLT----ITNVQRSDVGYYICQTLNVAGSI-LT   75 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEE----EeeCChhhCEEEEEEEEcCCCce-EE
Confidence            6789999999999999999999886432110   0111222333344443    45559999999999999999987 56


Q ss_pred             eEEEEEEee
Q psy8666          83 NATLQVAVV   91 (124)
Q Consensus        83 ~~~l~v~~~   91 (124)
                      .+.|.|...
T Consensus        76 ~~~l~V~~~   84 (90)
T cd05726          76 KAYLEVTDV   84 (90)
T ss_pred             EEEEEEeec
Confidence            788887654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.53  E-value=7.5e-14  Score=71.79  Aligned_cols=68  Identities=44%  Similarity=0.728  Sum_probs=49.8

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATL   86 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l   86 (124)
                      +.|.|.+.|.|.|.+.|+|++..+...     ........+.+    .|..++.+|.|.|.|.+.|..|.. +..+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~-----~~~~~~~~~~L----~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTES-----GKFHISPEGYL----AIRDVGVADQGRYECVARNTIGYA-SVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCC-----CCEEECCCCEE----EECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence            468999999999999999999876532     22223334443    355668999999999999999987 444443

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.53  E-value=3.6e-13  Score=71.95  Aligned_cols=81  Identities=28%  Similarity=0.446  Sum_probs=56.6

Q ss_pred             CCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEE--EccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           7 EPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRV--ILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         7 ~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +.+.|.|.+.+.|.|  .+.|+|+|..+............  ....+.+    .|.+++..|.|.|.|.+.|..|.. +.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~n~~g~~-~~   75 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDL----MIRNAQLKHAGKYTCTAQTVVDSL-SA   75 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceE----EEccCCHHhCeeeEEEEecCCCcE-EE
Confidence            468899999999988  56899999887532111101111  1122333    355669999999999999999887 66


Q ss_pred             eEEEEEEeee
Q psy8666          83 NATLQVAVVI   92 (124)
Q Consensus        83 ~~~l~v~~~~   92 (124)
                      ...|.|..+|
T Consensus        76 ~~~l~V~~pP   85 (85)
T cd04970          76 SADLIVRGPP   85 (85)
T ss_pred             EEEEEEECCC
Confidence            8888887764

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.52  E-value=4.8e-13  Score=72.41  Aligned_cols=80  Identities=26%  Similarity=0.527  Sum_probs=55.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.|.|. .+.|+++ +..+...     .+......+.. ....|..+..+|.|.|.|.+.|..|...
T Consensus        11 ~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~-----~r~~~~~~g~~-~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   83 (92)
T cd05866          11 ELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS-----QRVVVQKEGVR-SRLTIYNANIEDAGIYRCQATDAKGQTQ   83 (92)
T ss_pred             EEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC-----CCEEEEeCCCe-eEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence            4678999999999999887 8999984 5544321     12222233321 1223466699999999999999999875


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      ...+.|.+
T Consensus        84 ~~~i~l~~   91 (92)
T cd05866          84 EATVVLEI   91 (92)
T ss_pred             EEEEEEEE
Confidence            66666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.52  E-value=3.1e-13  Score=73.54  Aligned_cols=74  Identities=39%  Similarity=0.643  Sum_probs=52.1

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      |+.+.|.|.+.|.|.|.++|+++|..+....   .... ....+.+.+..   .....|.|.|.|.+.|..|...+..+.
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~---~~~~-~~~~g~L~I~~---~~~~~D~G~Y~C~A~N~~G~~~s~~a~   91 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAP---ESRY-TLVAGNLVINN---PQKARDAGSYQCLAINRCGTVVSREAN   91 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCC---CceE-EEECCeEEEcc---CCccCcCEEEEEEEEcCcCcEEEEEEE
Confidence            4579999999999999999999998875321   1122 22334443222   124689999999999999988665554


Q ss_pred             E
Q psy8666          86 L   86 (124)
Q Consensus        86 l   86 (124)
                      |
T Consensus        92 l   92 (94)
T cd05850          92 L   92 (94)
T ss_pred             E
Confidence            4

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.52  E-value=4.5e-13  Score=69.75  Aligned_cols=72  Identities=38%  Similarity=0.734  Sum_probs=51.6

Q ss_pred             CCCEEEEEeeeccCCCeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNA   84 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   84 (124)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+...     ........+.+.+..    +...|.|.|.|.+.|..|.. +..+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~-----~~~~~~~~~~L~i~~----~~~~D~G~Y~C~a~N~~G~~-~~~~   70 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNS-----SRTLVYDNGTLDILI----TTVKDTGSFTCIASNAAGEA-TATV   70 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCC-----CeEEEecCCEEEEEE----CChhhCEEEEEEEECCCCeE-EEEE
Confidence            6789999999999999999997 56554421     122233444554443    48999999999999999887 4555


Q ss_pred             EEE
Q psy8666          85 TLQ   87 (124)
Q Consensus        85 ~l~   87 (124)
                      .|.
T Consensus        71 ~l~   73 (74)
T cd05764          71 ELH   73 (74)
T ss_pred             EEE
Confidence            554

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.51  E-value=1.6e-13  Score=72.66  Aligned_cols=77  Identities=23%  Similarity=0.425  Sum_probs=54.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      ....|+.+.|.|.+.+.|.|.+.|+|++..+....     .. .... . .....|..++.+|.|.|.|.+.|..|.. .
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~-----~~-~~~~-~-~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~   75 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE-----IG-ESRK-K-KWTLSLKNLKPEDSGKYTCHVSNRAGEI-N   75 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc-----cc-eecC-c-eEEEEEccCChhhCEEEEEEEEcCCccE-E
Confidence            45679999999999999999999999988664321     10 1111 1 1123345669999999999999999876 4


Q ss_pred             eeEEEE
Q psy8666          82 RNATLQ   87 (124)
Q Consensus        82 ~~~~l~   87 (124)
                      ..+.|.
T Consensus        76 ~~~~v~   81 (82)
T cd05856          76 ATYKVD   81 (82)
T ss_pred             EEEEEe
Confidence            455543

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.51  E-value=4.1e-13  Score=70.62  Aligned_cols=69  Identities=32%  Similarity=0.485  Sum_probs=50.6

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      |+.+.|.|.+.|.|.|.+.|++++..+...     .+......... ....|.+++.+|.|.|.|.+.|..|...
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   69 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDS-----ARVSITSEGGY-GTLTIRDVKESDQGAYTCEAINTRGMVF   69 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCC-----CCEEEEECCCE-EEEEECCCChHHCEEEEEEEEecCCEEE
Confidence            678999999999999999999998766432     11112222211 2334677799999999999999998873

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.51  E-value=1.7e-13  Score=70.43  Aligned_cols=68  Identities=32%  Similarity=0.561  Sum_probs=49.2

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ   87 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~   87 (124)
                      +.|.|.+.|.|.|.+.|+|++..+..      ..........+    .|..++.+|.|.|.|.+.|..|.. .....|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~------~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK------GRAEILDDKSL----KIRNVTAGDEGSYTCEAENMVGKI-EASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC------CcEEEeeCCEE----EECcCChhHCEEEEEEEEcCCCcE-EEEEEEE
Confidence            46899999999999999999765532      12222233444    345569999999999999999987 4455554

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.50  E-value=7.1e-13  Score=69.56  Aligned_cols=72  Identities=32%  Similarity=0.715  Sum_probs=49.6

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce-eeeEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV-SRNATL   86 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l   86 (124)
                      +.|.|.+.|.|.|.+.|+|+|..+....    ..... ...+.+.    |..++.+|.|.|.|.+.|..|... +..+.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~----~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQ----GNYSVSSKERTLT----LRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCC----ccEEEeCCCCEEE----EeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            4789999999999999999998765321    11112 2223333    445589999999999999998763 234444


Q ss_pred             EE
Q psy8666          87 QV   88 (124)
Q Consensus        87 ~v   88 (124)
                      .|
T Consensus        73 ~v   74 (77)
T cd05760          73 SI   74 (77)
T ss_pred             EE
Confidence            44

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.50  E-value=4.2e-13  Score=70.05  Aligned_cols=73  Identities=36%  Similarity=0.605  Sum_probs=49.7

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ   87 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~   87 (124)
                      +.|.|.+.|.|.|.++|+|++.......  ........ ..+.+    .|..++.+|.|.|.|.+.|..|.. +..+.|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~--~~~~~~~~~~~~~L----~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~   73 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAA--RERRMHVMPEDDVF----FIVDVKIEDTGVYSCTAQNTAGSI-SANATLT   73 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcc--cccceEEecCCCEE----EEeeCCcccCEEEEEEEEcCCCEE-EeeEEEE
Confidence            4689999999999999999886422110  11111122 22333    345558999999999999999987 5566666


Q ss_pred             E
Q psy8666          88 V   88 (124)
Q Consensus        88 v   88 (124)
                      |
T Consensus        74 V   74 (75)
T cd05763          74 V   74 (75)
T ss_pred             E
Confidence            5

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.50  E-value=1e-12  Score=69.53  Aligned_cols=74  Identities=19%  Similarity=0.366  Sum_probs=49.4

Q ss_pred             EEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc--cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEE
Q psy8666          11 LNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL--PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATL   86 (124)
Q Consensus        11 l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l   86 (124)
                      +.|.+.|.|.|.++|+|+|..+..... ........  ..........|..++..|.|.|.|.|.|..|.. ...+.+
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~   78 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDY-IRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSISA   78 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCc-eeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEEe
Confidence            689999999999999999998764311 00011111  011122234567779999999999999999987 344444

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.50  E-value=3.3e-13  Score=73.27  Aligned_cols=72  Identities=29%  Similarity=0.571  Sum_probs=51.5

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCccceeeeE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVGTAVSRNA   84 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~   84 (124)
                      |..+.|.|.+.|.|.|.++|+|++..+....    .. .....+.+.    |..+. .+|.|.|.|.+.|..|...+..+
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~----~~-~~~~~g~L~----I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a   89 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTN----DR-YSMVGGNLV----INNPDKYKDAGRYVCIVSNIYGKVRSREA   89 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCC----Ce-EEEECCEEE----ECcCCcCCCCEEEEEEEEeCcceEEEccE
Confidence            3479999999999999999999998764211    12 222344443    33433 58999999999999998766555


Q ss_pred             EE
Q psy8666          85 TL   86 (124)
Q Consensus        85 ~l   86 (124)
                      .|
T Consensus        90 ~l   91 (93)
T cd05849          90 TL   91 (93)
T ss_pred             EE
Confidence            44

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.49  E-value=9.3e-13  Score=70.10  Aligned_cols=79  Identities=23%  Similarity=0.381  Sum_probs=56.9

Q ss_pred             CCEEEEEeeecc--CCCeEEEEeCCEEeeccCCCCCceEEE----ccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           7 EPVTLNCKAEGK--PEPTIEWYKDGELVETSKSDAKSQRVI----LPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         7 ~~~~l~C~~~~~--p~p~v~w~k~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      +++.|.|.+.+.  +.+.+.|+|+|+.+......  ..+..    ...+.+.    |.+++..|.|.|+|.+.|..+.. 
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~--~~~~~~~~~~~~~~L~----I~nv~~~dsG~YtC~a~n~~~~~-   73 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDG--DHFERVGGQDSAGDLM----IRSIQLKHAGKYVCMVQTSVDKL-   73 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCC--ccEEEeccCCCCCcEE----EecCCHHHCEEEEEEEEcccCce-
Confidence            368899998764  46789999999988521100  11212    1234454    45559999999999999999988 


Q ss_pred             eeeEEEEEEeee
Q psy8666          81 SRNATLQVAVVI   92 (124)
Q Consensus        81 ~~~~~l~v~~~~   92 (124)
                      +....|.|..||
T Consensus        74 ~a~a~L~V~~pP   85 (85)
T cd05853          74 SAAADLIVRGPP   85 (85)
T ss_pred             EEEEEEEEecCC
Confidence            778999998876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.49  E-value=9e-13  Score=73.58  Aligned_cols=85  Identities=21%  Similarity=0.340  Sum_probs=57.9

Q ss_pred             cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCc-EEEEEEEcCCC-ccCCeEEEEEeEeCCccceee
Q psy8666           5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS-LFFLRVVHGKK-EQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      .|..+.|.|.+.|.|.|.+.|+|+|..+....  ..........+. ......|..+. .+|.|.|.|.+.|..|.. ..
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~--~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~   98 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGN--PRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SL   98 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCC--CeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cE
Confidence            46789999999999999999999998775321  011111111111 11223445555 589999999999999998 56


Q ss_pred             eEEEEEEeee
Q psy8666          83 NATLQVAVVI   92 (124)
Q Consensus        83 ~~~l~v~~~~   92 (124)
                      .+.|.+..+|
T Consensus        99 ~i~L~~~~~p  108 (109)
T cd05773          99 DIQLVSTSRP  108 (109)
T ss_pred             EEEEEecCCC
Confidence            7788776554

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.49  E-value=6.1e-13  Score=70.33  Aligned_cols=77  Identities=31%  Similarity=0.552  Sum_probs=50.4

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEE---eeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGEL---VETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      |+.+.|.|.+.+.|.|.+.|+|++..   +................+.+    .|..++.+|.|.|.|.+.|..|.. ..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L----~I~~~~~~D~G~Y~C~a~N~~G~~-~~   75 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQL----VIYNAQPQDAGLYTCTARNSGGLL-RA   75 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEE----EEccCCcccCEEEEEEEecCCceE-EE
Confidence            68899999999999999999997421   11110000011111122233    345669999999999999999987 45


Q ss_pred             eEEEE
Q psy8666          83 NATLQ   87 (124)
Q Consensus        83 ~~~l~   87 (124)
                      .+.|.
T Consensus        76 ~~~l~   80 (81)
T cd05765          76 NFPLS   80 (81)
T ss_pred             EEEEe
Confidence            66554

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.48  E-value=1.4e-12  Score=70.68  Aligned_cols=80  Identities=23%  Similarity=0.462  Sum_probs=54.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.|.| +.+.|++ ++..+...     ........+.......|..++.+|.|.|.|.+.|..|...
T Consensus        11 ~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~   84 (92)
T cd04977          11 EISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQ-----QQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTES   84 (92)
T ss_pred             EECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccC-----CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcc
Confidence            467899999999999986 4899997 56544321     1222222332333445677799999999999999876553


Q ss_pred             eeeEEEE
Q psy8666          81 SRNATLQ   87 (124)
Q Consensus        81 ~~~~~l~   87 (124)
                      ...+.|.
T Consensus        85 ~~sv~l~   91 (92)
T cd04977          85 EATVNLK   91 (92)
T ss_pred             eeEEEEE
Confidence            5555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.48  E-value=1.1e-12  Score=67.33  Aligned_cols=62  Identities=27%  Similarity=0.509  Sum_probs=44.4

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      |+.+.|.|.+.|.|.|.+.|+|++..+...     .. .......+.    |.+  ..|.|.|.|.+.|..|..
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~-----~~-~~~~~~~L~----i~~--~~d~G~Y~C~A~N~~G~~   62 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE-----DE-MPVGRNVLE----LTN--IYESANYTCVAISSLGMI   62 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCc-----cc-eecCccEEE----Eec--cccCeeEEEEEEeCCCEE
Confidence            678999999999999999999999876421     11 111122222    222  357899999999999986

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.47  E-value=8e-13  Score=69.36  Aligned_cols=73  Identities=30%  Similarity=0.652  Sum_probs=47.7

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCC-CccCCeEEEEEeEeCCccceeeeEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGK-KEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~-~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      +.|.|.+.|.|.|.++|+|++..+....   ...... ...+.+.+... ... ...|.|.|.|.+.|..|...+..+.
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~---~~~~~~~~~~g~L~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEK---DPRVTMKPDSGTLVIDNM-NGGRAEDYEGEYQCYASNELGTAISNEIH   75 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCC---CCCEEEeCCCCEEEEecc-CCCCCcCCCEEEEEEEEcCCCcEEccccE
Confidence            4689999999999999999998764321   112222 23444433322 110 2368999999999999987554443

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.47  E-value=1.4e-12  Score=68.39  Aligned_cols=74  Identities=35%  Similarity=0.634  Sum_probs=46.9

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      +.|.|.+.|.|.|.++|+|++..+....   ....... ..+.+.+...-......|.|.|.|.+.|..|...+..+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~---~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDK---DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV   75 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcC---CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence            4689999999999999999998764221   1122222 234443322200001247899999999999987554443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.47  E-value=6.1e-13  Score=68.63  Aligned_cols=70  Identities=33%  Similarity=0.572  Sum_probs=49.5

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      +.|.|.+.|.|.|.+.|+|++..+...     ..........+    .|..++.+|.|.|.|.+.|..|.. ...+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-----~~~~~~~~~~L----~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-----RTKFENFNKTL----KIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-----ceeEecCCCEE----EECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence            468999999999999999998765421     11111122223    356668999999999999999887 45665554

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.47  E-value=1.9e-12  Score=67.94  Aligned_cols=73  Identities=30%  Similarity=0.646  Sum_probs=47.3

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCccceeeeEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      +.|.|.+.|.|.|.++|+|++..+...   ....... ...+.+.+... .... ..|.|.|.|.+.|..|...+..+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~---~~~~~~~~~~~~~L~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVA---KDPRVSMRRRSGTLVIDFS-GGGRPEDYEGEYQCFARNNLGTALSNKIL   75 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCc---CCCcEEEeCCCceEEEecc-CCCCCCCCCEEEEEEEEeccceEEEEEEE
Confidence            468999999999999999999865421   1112222 23444443322 1112 246899999999999987655443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.46  E-value=1.7e-12  Score=68.65  Aligned_cols=70  Identities=30%  Similarity=0.537  Sum_probs=50.2

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.|.|.| .+.|+|+|..+...     .   ....+.+.+    .  ...|.|.|.|.+.|..|...
T Consensus         9 ~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-----~---~~~~s~L~i----~--~~~d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749           9 SVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-----P---APSPSVLNV----P--GLNETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             EEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-----C---CCCCCEEEE----c--cccCCeEEEEEEEeccCcEE
Confidence            56789999999999999999 69999999876521     0   011122222    1  23578999999999999775


Q ss_pred             eeeEE
Q psy8666          81 SRNAT   85 (124)
Q Consensus        81 ~~~~~   85 (124)
                      +....
T Consensus        75 s~~a~   79 (81)
T cd05749          75 SRTGT   79 (81)
T ss_pred             eeeEE
Confidence            54443

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.46  E-value=7.3e-13  Score=69.85  Aligned_cols=67  Identities=18%  Similarity=0.458  Sum_probs=50.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+..|+.+.|.|.+.+. .+.+.|+|+|..+...     .... .....+    .|..++.+|.|.|.|.+.|..|..
T Consensus         5 ~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~-----~~~~-~~~~~L----~I~~~~~~DsG~Y~C~a~n~~g~~   71 (79)
T cd04973           5 SAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN-----NRTR-ITGEEV----QIKDAVPRDSGLYACVTSSPSGSD   71 (79)
T ss_pred             EecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC-----ceEE-EeCCEE----EECCCChhhCEEEEEEEeCCCCcc
Confidence            46789999999999885 5789999999877532     1211 222323    456669999999999999988776

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.45  E-value=9.7e-13  Score=71.53  Aligned_cols=79  Identities=24%  Similarity=0.411  Sum_probs=54.2

Q ss_pred             EEecCCCEEEEEeeec-----cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEG-----KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-----~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+.+|+.+.|.|.+.+     .|.|.+.|||++..+....  ....+.....+.+.    |..+..+|.|.|.|.+.|..
T Consensus        10 ~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~--~~~~r~~~~~~~L~----I~~~~~~DsG~Y~C~~~N~~   83 (94)
T cd05756          10 YVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT--EERSRMHQQKDLLW----FLPAALEDSGLYTCVVRNST   83 (94)
T ss_pred             EEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc--cccceeeecCCeEE----EccCCcccCeEEEEEEcCCC
Confidence            3568999999999988     6889999999986543211  01111222233333    45559999999999999998


Q ss_pred             ccceeeeEEEE
Q psy8666          77 GTAVSRNATLQ   87 (124)
Q Consensus        77 ~~~~~~~~~l~   87 (124)
                      |.. ...+.|.
T Consensus        84 g~~-~~~~~L~   93 (94)
T cd05756          84 YCM-KVSISLT   93 (94)
T ss_pred             ccE-EEEEEEE
Confidence            876 3455554

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.45  E-value=2e-12  Score=69.76  Aligned_cols=79  Identities=25%  Similarity=0.382  Sum_probs=51.1

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCC----EEeeccCCCCCceEEEc------cCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDG----ELVETSKSDAKSQRVIL------PTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g----~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      |+.+.|.|.+.|.|.|.++|+|++    ..+....  ........      ...... ...|.+++.+|.|.|.|.+.|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~A~N~   77 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDG--LPYVTVLKVAGINTTDNESE-VLYLRNVSFDDAGEYTCLAGNS   77 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCC--CceEEEEEecCCcccccccc-eEEEeccccccCcEEEEEeecc
Confidence            678999999999999999999963    2221100  00000000      001111 1234566899999999999999


Q ss_pred             CccceeeeEEEEE
Q psy8666          76 VGTAVSRNATLQV   88 (124)
Q Consensus        76 ~~~~~~~~~~l~v   88 (124)
                      .|.. ...+.|.|
T Consensus        78 ~G~~-~~sa~L~V   89 (90)
T cd04974          78 IGPS-HHSAWLTV   89 (90)
T ss_pred             cCcc-cCCEEEEe
Confidence            9988 55777765

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.44  E-value=1.2e-12  Score=68.93  Aligned_cols=75  Identities=36%  Similarity=0.588  Sum_probs=49.4

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEe-eccC-C-CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELV-ETSK-S-DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      +.|.|.+.|.|.|.+.|+|++... .... . ....+......+.+.    |..+..+|.|.|.|.+.|..|...+..+.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~   76 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLL----IKHVLEEDSGYYLCKVSNDVGADASKSMV   76 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEE----ECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence            468999999999999999964321 1100 0 011222223344443    45558999999999999999987666666


Q ss_pred             EE
Q psy8666          86 LQ   87 (124)
Q Consensus        86 l~   87 (124)
                      |.
T Consensus        77 l~   78 (79)
T cd05734          77 LT   78 (79)
T ss_pred             Ee
Confidence            54

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.44  E-value=7.6e-12  Score=68.55  Aligned_cols=81  Identities=20%  Similarity=0.333  Sum_probs=55.4

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEcc---CCcEEEEEEEcCCCccC-CeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILP---TGSLFFLRVVHGKKEQD-GGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~d-~g~y~C~~~~~~   76 (124)
                      .+..|+.+.|.|.+.|.|.| .+.|++++..+....   ...+....   .........|..++.+| .|.|.|.+.|..
T Consensus        12 ~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~---~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~   88 (98)
T cd05758          12 YAILGDKGRVECFIFSTPPPDRIVWTWKENELESGS---SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF   88 (98)
T ss_pred             EEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCC---CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence            36789999999999999999 599999998765321   01121111   12222344567778745 899999999999


Q ss_pred             ccceeeeEEE
Q psy8666          77 GTAVSRNATL   86 (124)
Q Consensus        77 ~~~~~~~~~l   86 (124)
                      |.. ...+.|
T Consensus        89 G~~-~~~~~L   97 (98)
T cd05758          89 GSG-TAIISL   97 (98)
T ss_pred             Ccc-cEEEEe
Confidence            987 334443

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.44  E-value=5.1e-12  Score=68.22  Aligned_cols=79  Identities=28%  Similarity=0.437  Sum_probs=52.3

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeC----CEEeeccCCCCCceEEEccCC------cEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKD----GELVETSKSDAKSQRVILPTG------SLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~----g~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      |+.+.|.|.+.+.|.|.++|+|+    |..+....   ..........      .......|..++.+|.|.|.|.+.|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   77 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDG---LPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS   77 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCC---CeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence            67899999999999999999984    33322110   0011111111      01123456777999999999999999


Q ss_pred             CccceeeeEEEEE
Q psy8666          76 VGTAVSRNATLQV   88 (124)
Q Consensus        76 ~~~~~~~~~~l~v   88 (124)
                      .|.. .....|.|
T Consensus        78 ~G~~-~~~a~L~V   89 (90)
T cd05858          78 IGIS-HHSAWLTV   89 (90)
T ss_pred             CCcc-cceEEEEE
Confidence            9987 55666665

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.41  E-value=3.2e-12  Score=66.01  Aligned_cols=59  Identities=29%  Similarity=0.389  Sum_probs=43.5

Q ss_pred             EEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666          10 TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus        10 ~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .|.|.+.|.|.|.+.|+|++..+...     ..........+    .|.+++.+|.|.|.|.+.+...
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~-----~~~~~~~~~~L----~I~~v~~~D~G~YtC~a~~~~~   60 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAEK-----CSRYHVDGYSL----VIKDVTEEDAGIYTILLGIKQY   60 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCCC-----CcEEEeCCCEE----EECcCCHHHCEEEEEEEEcccc
Confidence            68999999999999999999876532     11122222233    4566699999999999999743

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.40  E-value=1.3e-11  Score=65.65  Aligned_cols=80  Identities=25%  Similarity=0.478  Sum_probs=54.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+....    ........... ....|..+..+|.|.|.|.+.|..|.. .
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~----~~~~~~~~~~~-~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~   78 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEH----RIGGYKVRKKK-WTLILESVVPSDSGKYTCIVENKYGSI-N   78 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccC----ceeEEEccCcE-EEEEEeECCcccCEEEEEEEEECCceE-E
Confidence            46789999999999999999999999988765321    00001111111 122344558999999999999998876 4


Q ss_pred             eeEEEE
Q psy8666          82 RNATLQ   87 (124)
Q Consensus        82 ~~~~l~   87 (124)
                      ..+.|.
T Consensus        79 ~~~~l~   84 (85)
T cd05729          79 HTYKVD   84 (85)
T ss_pred             EEEEEe
Confidence            455544

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.40  E-value=8.3e-12  Score=65.26  Aligned_cols=74  Identities=30%  Similarity=0.567  Sum_probs=52.6

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      +.|.|.+.|.|.|.+.|+|++..+....   .........+.   ...|..++..|.|.|.|.+.|..|.. ...+.|.|
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~---~~~~~~~~~~~---~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   73 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKL---SKQLTLIANGS---ELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFV   73 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCC---CccEEEeCCCC---EEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEE
Confidence            3689999999999999999998765321   11222222222   12345668999999999999999988 45777766


Q ss_pred             E
Q psy8666          89 A   89 (124)
Q Consensus        89 ~   89 (124)
                      .
T Consensus        74 ~   74 (76)
T cd05736          74 E   74 (76)
T ss_pred             E
Confidence            4

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.38  E-value=1.1e-11  Score=64.59  Aligned_cols=68  Identities=24%  Similarity=0.427  Sum_probs=47.1

Q ss_pred             EEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         9 ~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +.|.|.+.+ .|.|.+.|+|++..+......  ........ .......|..++.+|.|.|.|.+.|..|..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~--~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKP--RNIKIRNK-KKNSELQINKAKLADSGEYTCVVENILGND   69 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCc--ceEEEEec-CceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence            368999998 899999999999877642110  11111111 112233456779999999999999999886

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.38  E-value=7e-12  Score=67.78  Aligned_cols=69  Identities=39%  Similarity=0.717  Sum_probs=48.3

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCccceee
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      |..+.|.|.+.|.|.|.++|+|++..+....   .... ....+.+.+    ..+. ..|.|.|.|.+.|..|...+.
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~---~~~~-~~~~~~L~i----~~~~~~~d~G~Y~C~a~N~~G~~~S~   88 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEP---DSRY-SLVGGNLVI----SNPSKAKDAGRYQCLASNIVGTVLSR   88 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCC---CCCE-EEECCEEEE----ecCCccCCCEEEEEEEEcCCCEEEec
Confidence            4569999999999999999999998774221   1111 223344432    3334 489999999999999987543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.37  E-value=1.4e-11  Score=66.29  Aligned_cols=80  Identities=19%  Similarity=0.384  Sum_probs=54.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|...+ |.+.+.|+|++..+.....  ...........+.    |..++.+|.|.|.|.+.+..+....
T Consensus         7 ~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~~~~~~~~~   79 (89)
T cd04979           7 TVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE--PEERLLVTEDGLL----IRSVSPADAGVYTCQSVEHGFKQTL   79 (89)
T ss_pred             EEECCCcEEEEEeCCC-CCceEEEEECCcccccccC--cCceEEEcCCCEE----EccCCHHHCEEEEEEEecCccceeE
Confidence            4678999999999877 8889999999876543210  0111222233333    4566999999999999987665545


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ....|.|
T Consensus        80 ~~~~l~V   86 (89)
T cd04979          80 ATYSLNV   86 (89)
T ss_pred             eEEEEEE
Confidence            5555555

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.35  E-value=1.7e-11  Score=65.29  Aligned_cols=81  Identities=17%  Similarity=0.291  Sum_probs=53.5

Q ss_pred             CCCEEEEEeeecc--CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeee
Q psy8666           6 NEPVTLNCKAEGK--PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRN   83 (124)
Q Consensus         6 G~~~~l~C~~~~~--p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~   83 (124)
                      |+.+.|.|.+.+.  |.|.+.|.+++..+....... ................|.+++.+|.|.|.|.+.|..+.. +..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s   78 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMV-TRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KES   78 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEee-cccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEE
Confidence            7889999999998  788999998776543210000 000111111223345567889999999999999998876 455


Q ss_pred             EEEEE
Q psy8666          84 ATLQV   88 (124)
Q Consensus        84 ~~l~v   88 (124)
                      ..+.|
T Consensus        79 ~~v~v   83 (84)
T cd05742          79 TKVNI   83 (84)
T ss_pred             EEEEE
Confidence            55544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.34  E-value=6.9e-11  Score=64.34  Aligned_cols=75  Identities=15%  Similarity=0.240  Sum_probs=49.9

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCC---CCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD---AKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      +.+..|+++.|.|.+.+.|.|.+.|+|++..+......   .+.+..............|.+++.+|.|.|.|.+...
T Consensus         7 ~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           7 ETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             EEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            35789999999999999999999999987643211000   0111111122222234456888999999999998883

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.29  E-value=2.7e-10  Score=60.65  Aligned_cols=82  Identities=21%  Similarity=0.358  Sum_probs=52.8

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc-cceeeeE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG-TAVSRNA   84 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~-~~~~~~~   84 (124)
                      |+++.|.|.+.+.|.+.+.|+++++......  ..................|..++.+|.|.|.|.+.|... ...+..+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv   78 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGI--PEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV   78 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCc--eEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence            7899999999999999999998775422110  000011112222334456678899999999999998765 2224555


Q ss_pred             EEEEE
Q psy8666          85 TLQVA   89 (124)
Q Consensus        85 ~l~v~   89 (124)
                      .|.|.
T Consensus        79 ~i~V~   83 (84)
T cd05861          79 NITVH   83 (84)
T ss_pred             EEEEe
Confidence            65553

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.25  E-value=3.1e-10  Score=61.83  Aligned_cols=76  Identities=11%  Similarity=0.185  Sum_probs=48.6

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccC---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +.+.+|+++.|.|.+.+.|.|.+.|++.+..+....   ...+.++.............|..++.+|.|.|.|.+.+..
T Consensus         7 v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~   85 (95)
T cd07701           7 VTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP   85 (95)
T ss_pred             EEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence            357899999999999999999999997543321100   0011222211111111233467889999999999999853

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.24  E-value=2.2e-10  Score=59.85  Aligned_cols=69  Identities=17%  Similarity=0.391  Sum_probs=45.1

Q ss_pred             EEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         9 ~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +.|.|.+.+ .|.+.+.|+|+|+.+..... ............ .....|..++..|.|.|.|.+.|..|..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~-~~~~~~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~N~~g~~   70 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNK-PDNKIKIRKKKK-SSELQISKASLADNGEYKCMVSSKLGND   70 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCC-CCceEEEEeCCc-EEEEEECcCCcccCEEEEEEEEeCCCce
Confidence            368999764 57789999999987653211 111111111111 1223456779999999999999999876

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.23  E-value=8.9e-11  Score=62.40  Aligned_cols=72  Identities=25%  Similarity=0.397  Sum_probs=51.8

Q ss_pred             EEecCCCEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+++.|.|.... .+.+.+.|+|+|..+...          .....+.    |..++.+|.|.|.|.+.+..+...
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----------~~~~~l~----I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----------HSNSNLS----IPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----------CCCceEE----ECccCHHHCEEEEEEEEeCCceec
Confidence            4678999999999854 566789999999755311          1122332    445589999999999999988665


Q ss_pred             eeeEEEE
Q psy8666          81 SRNATLQ   87 (124)
Q Consensus        81 ~~~~~l~   87 (124)
                      +..+.|.
T Consensus        76 s~~~~i~   82 (83)
T cd05753          76 SEPVSIT   82 (83)
T ss_pred             CCCEEEE
Confidence            6665554

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.23  E-value=1.1e-10  Score=62.35  Aligned_cols=65  Identities=22%  Similarity=0.455  Sum_probs=48.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+..|+++.|.|.+.+ +.+.+.|+++|..+...     ........+.+.    |.+++..|.|.|.|.+.+..
T Consensus         7 ~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~-----~~r~~~~~~~L~----I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           7 TFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE-----SAKYLLYRDGLL----IFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EEECCCCEEEEEECCC-CCCeEEEEECCEECCCC-----CceEEEECCcEE----EeCCCHHHCEEEEEEEEecc
Confidence            4678999999999754 67889999999987632     112233445553    45569999999999998864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.22  E-value=8.8e-11  Score=62.66  Aligned_cols=66  Identities=24%  Similarity=0.434  Sum_probs=49.1

Q ss_pred             EEecCCCEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+..|+.++|.|.+.+ .|.+.+.|++++..+...        .....+.+    .|..++.+|.|.|.|.+.|..|..
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--------~~~~~~~L----~I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754          12 EVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--------AMDFNGIL----TIRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             EEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--------ccccCCEE----EECCCCHHHCEEEEEEEeccCCeE
Confidence            4678999999999864 688899999988654311        11112333    456669999999999999998877

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.21  E-value=3.3e-10  Score=61.29  Aligned_cols=68  Identities=21%  Similarity=0.438  Sum_probs=49.0

Q ss_pred             EEecCCCEEEEEeeec-----cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEG-----KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-----~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+..|....|.|...+     .|.|.+.|||++..+...     .. .....+.+.    |..+..+|.|.|.|.+.|..
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~-----~~-~~~~~~~L~----I~~v~~~DsG~YtC~~~n~~   75 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD-----RK-RFVKGSKLL----IQNVTEEDAGNYTCKLTFTH   75 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC-----cc-EEecCCEEE----EeeCChhhCEEEEEEEEecC
Confidence            4668999999998643     257899999999887632     11 122444454    44559999999999999987


Q ss_pred             ccc
Q psy8666          77 GTA   79 (124)
Q Consensus        77 ~~~   79 (124)
                      +..
T Consensus        76 ~~~   78 (92)
T cd05757          76 NGK   78 (92)
T ss_pred             CCE
Confidence            665

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.21  E-value=1.7e-10  Score=62.65  Aligned_cols=72  Identities=21%  Similarity=0.330  Sum_probs=52.7

Q ss_pred             EEecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+.+|+.+.|.|.. .+.|.|.+.|++++..+....  ..........+.+.+..+    +..|.|.|.|.+.|.....
T Consensus        14 ~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~--d~r~~~~~~~G~L~fs~v----~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          14 KVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPE--DGRRFVSQTNGNLYIAKV----EASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             eeeeCCcEEEeeCCCCCCCCCEEEEEECCccccccc--CCCeEEeCCCCcEEEeec----CHhhCceeEEEEEecccCC
Confidence            46789999999974 688999999999986532111  112233344688877766    8999999999999976443

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.20  E-value=4e-10  Score=60.88  Aligned_cols=81  Identities=22%  Similarity=0.377  Sum_probs=47.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe-CCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN-SVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~-~~~~~~   80 (124)
                      ...+|+.+.|.|.. +.|.|.+.|||+....................+.+.    |..++.+|.|.|.|.+.+ ..+.. 
T Consensus         7 ~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~----I~~~~~~DsG~Y~C~a~~~~~~~~-   80 (91)
T cd05871           7 YGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLL----LRSLQRSDAGVYTCTAVEHSFSQT-   80 (91)
T ss_pred             EEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEE----EeeCChhHCEEEEEEEEccCCeEE-
Confidence            46789999999996 478899999984321110000000111122333443    455599999999999985 44333 


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      .....|.|
T Consensus        81 ~~~~~l~v   88 (91)
T cd05871          81 LAKYTLHV   88 (91)
T ss_pred             EEEEEEEE
Confidence            23444444

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>KOG3513|consensus

Probab=99.19  E-value=2e-10  Score=83.29  Aligned_cols=105  Identities=21%  Similarity=0.246  Sum_probs=73.5

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEE-eeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGEL-VETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      ...|+.+.|.|.+.|.|.|.+.|.|.+.. +..      ..........+.    |.+++.+|.|.|.|.+.|..|.. .
T Consensus       253 a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~------r~~~~~~~~vL~----I~nv~~~D~G~Y~C~AeN~~G~~-~  321 (1051)
T KOG3513|consen  253 ALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR------RATYSNYGKVLK----IPNVQYEDAGEYECIAENSRGSA-T  321 (1051)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc------ceeeeccccEEE----ecccCcCCCeEEEEEEecccccc-e
Confidence            45799999999999999999999997763 321      111122223333    35569999999999999999977 7


Q ss_pred             eeEEEEEEeeeeeeeeccceehhhhh-heeeeeecCcc
Q psy8666          82 RNATLQVAVVIFFISFFRFKLSAYLY-DLFRGVVNKTN  118 (124)
Q Consensus        82 ~~~~l~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  118 (124)
                      ....+.|..+|.+...++-...+.-. ..|+|+.+|..
T Consensus       322 ~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P  359 (1051)
T KOG3513|consen  322 HSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKP  359 (1051)
T ss_pred             eeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCC
Confidence            78899999999877655543332211 23666666543

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.19  E-value=1.1e-09  Score=59.74  Aligned_cols=81  Identities=20%  Similarity=0.341  Sum_probs=54.5

Q ss_pred             EEecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEc---cCCcEEEEEEEcCCCccC-CeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVIL---PTGSLFFLRVVHGKKEQD-GGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~d-~g~y~C~~~~~~   76 (124)
                      .+..|+.+.|.|.+.+.|.|. +.|..++..+....   ...+...   ........+.|.++...| .|.|.|.+.|.+
T Consensus        12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~---~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~   88 (98)
T cd05898          12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGT---SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF   88 (98)
T ss_pred             EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCC---CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence            356899999999998888874 68988776554321   1122221   223345555667777666 689999999999


Q ss_pred             ccceeeeEEE
Q psy8666          77 GTAVSRNATL   86 (124)
Q Consensus        77 ~~~~~~~~~l   86 (124)
                      |.. ...+.|
T Consensus        89 G~d-~~~i~L   97 (98)
T cd05898          89 GSG-TAIIQL   97 (98)
T ss_pred             ccc-eEEEEe
Confidence            988 344443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.18  E-value=2.1e-10  Score=62.11  Aligned_cols=69  Identities=26%  Similarity=0.383  Sum_probs=53.8

Q ss_pred             CEEecCCCEEEEEe-eeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCe-EEEEEeEeCCc
Q psy8666           1 MVVAKNEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG-VYWCLARNSVG   77 (124)
Q Consensus         1 v~~~~G~~~~l~C~-~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g-~y~C~~~~~~~   77 (124)
                      +.+.+|+.+.|.|. ..|.|.|.+.|++++.....    .+.+......+.+.+.++    +..|.| .|.|.+.|...
T Consensus        13 v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~----~~~Ri~~~~~GnL~fs~v----~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          13 VEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT----QDERVSMGQNGNLYFANV----EEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             eEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc----ccccEEECCCceEEEEEE----ehhhCCCCeEEEEEcccc
Confidence            35778999999997 68999999999987654332    224455566788887777    899999 89999999763

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.18  E-value=2.8e-10  Score=59.73  Aligned_cols=66  Identities=33%  Similarity=0.664  Sum_probs=46.7

Q ss_pred             EEecCCCEEEEEeeeccCC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|. +.+.|+|+|..+..            ....+    .|..+ .+|.|.|.|.+.+.   ..
T Consensus        11 ~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------------~~~~l----~i~~~-~~dsG~Y~C~a~~~---~~   70 (78)
T cd05752          11 TIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------------TTNSY----RIRAA-NNDSGEYRCQTQGS---SL   70 (78)
T ss_pred             EeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------------cCCeE----EEeec-ccCCEEeEEECCCC---cC
Confidence            3568999999999988775 46999999987631            11222    23445 88999999999875   22


Q ss_pred             eeeEEEE
Q psy8666          81 SRNATLQ   87 (124)
Q Consensus        81 ~~~~~l~   87 (124)
                      +..+.|.
T Consensus        71 S~~v~l~   77 (78)
T cd05752          71 SDPVHLE   77 (78)
T ss_pred             CCCEEEe
Confidence            4455554

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.16  E-value=6.2e-10  Score=55.34  Aligned_cols=63  Identities=40%  Similarity=0.707  Sum_probs=45.1

Q ss_pred             cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      +|+.+.|.|.+.+.|.+.+.|++++..+..      ..........+.+.    .++..|.|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~------~~~~~~~~~~L~i~----~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE------SNRLSASGSTLTIK----SVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC------CCEEecCCcEEEEe----eCCcccCEEEEEEEecCCC
Confidence            478899999988888899999998876551      11122233344433    4488999999999988653

>KOG4221|consensus

Probab=99.14  E-value=5.2e-10  Score=81.76  Aligned_cols=93  Identities=25%  Similarity=0.457  Sum_probs=69.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      ++..|+.+.|.|.+.+.|.|.+.|.|+|..+.-.    +........+.+.+..+    +..|.|.|+|.+.|..... .
T Consensus       248 ~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~d----s~rivl~g~~slliS~a----~~~dSg~YtC~Atn~~D~i-d  318 (1381)
T KOG4221|consen  248 VVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVD----SYRIVLVGGSSLLISNA----TDDDSGKYTCRATNTNDSI-D  318 (1381)
T ss_pred             ccccCCcEEEEEEecCCCCCceEEeeCCeeeeec----ceEEEEecccceEEecc----ccccCceEEEEecCCCccc-c
Confidence            4678999999999999999999999999887732    13334444556654444    8899999999999944333 3


Q ss_pred             eeEEEEEEeeeeeeeeccceeh
Q psy8666          82 RNATLQVAVVIFFISFFRFKLS  103 (124)
Q Consensus        82 ~~~~l~v~~~~~~~~~~~~~~~  103 (124)
                      ....+.|..+|.+...+.....
T Consensus       319 asaev~V~a~P~~~~~p~~l~A  340 (1381)
T KOG4221|consen  319 ASAEVTVLAPPGFTKAPTTLVA  340 (1381)
T ss_pred             cceEEEEEcCCCCCCCCcceee
Confidence            4678888888887766655443

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.12  E-value=2e-09  Score=57.55  Aligned_cols=83  Identities=22%  Similarity=0.285  Sum_probs=50.9

Q ss_pred             CCCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeee
Q psy8666           6 NEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRN   83 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~   83 (124)
                      |+++.|.|.+.+.+.+  .+.|..++...........................|.+++..|.|.|.|.+.|..+.. ...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-ccc
Confidence            7889999999876544  6799887764321100000011111112233444566779999999999999988765 456


Q ss_pred             EEEEEE
Q psy8666          84 ATLQVA   89 (124)
Q Consensus        84 ~~l~v~   89 (124)
                      ..|.|.
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            666553

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.11  E-value=2.1e-09  Score=56.26  Aligned_cols=71  Identities=32%  Similarity=0.694  Sum_probs=52.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+...            ...+    .+..+...|.|.|.|.+.+..+...+
T Consensus        10 ~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~------------~~~~----~~~~~~~~~~g~y~C~~~~~~~~~~s   73 (80)
T PF13895_consen   10 SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS------------QNGL----FIPNVSPEDSGNYTCRASNGSGSNTS   73 (80)
T ss_dssp             EEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE------------SSEE----EESSEEGGGTEEEEEEEEETTEEEEE
T ss_pred             EEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee------------eeee----eeeeeccccCEEEEEEEEeCCCCeEe
Confidence            4678999999999998888999999998776632            0112    22445889999999999997665445


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        74 ~~~~v~V   80 (80)
T PF13895_consen   74 TSVNVTV   80 (80)
T ss_dssp             EEEEEEE
T ss_pred             eeEEeeC
Confidence            5555543

...

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.11  E-value=1.7e-09  Score=56.78  Aligned_cols=67  Identities=22%  Similarity=0.484  Sum_probs=43.0

Q ss_pred             EEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           9 VTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         9 ~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +.|.|... +.|++.+.|||+++.+................+.+.+.    ..+..|.+.|.|.+.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~----~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFP----VDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEE----eeeccCCcEEEEEEEChhhCC
Confidence            67899964 67999999999999886421111111111112223222    336788999999999988764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>KOG4194|consensus

Probab=99.10  E-value=5.2e-10  Score=77.29  Aligned_cols=89  Identities=31%  Similarity=0.519  Sum_probs=65.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEE-eeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGEL-VETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      +...|+.+.+.|.+.|.|.|.+.|-|+|.. ++...  .............++    .+++.+|.|.|.|.+.|..|.. 
T Consensus       623 tl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~--eRRl~Vmpedd~f~I----tnvk~eD~GiYtC~A~n~AG~i-  695 (873)
T KOG4194|consen  623 TLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAAR--ERRLHVMPEDDVFFI----TNVKIEDQGIYTCTAQNVAGQI-  695 (873)
T ss_pred             eeecccceeeeeeccCCCCcceeehhcCCCCCchhh--hheeeecCCCCEEEE----ecccccccceeEEeeeccccce-
Confidence            566799999999999999999999998765 54331  111111223333443    4459999999999999999998 


Q ss_pred             eeeEEEEEEeeeeeeee
Q psy8666          81 SRNATLQVAVVIFFISF   97 (124)
Q Consensus        81 ~~~~~l~v~~~~~~~~~   97 (124)
                      +....|.|...|.+...
T Consensus       696 sanAtL~V~e~p~f~~P  712 (873)
T KOG4194|consen  696 SANATLTVLETPSFSIP  712 (873)
T ss_pred             eeceEEEEecCCccccc
Confidence            77899999988766544

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.08  E-value=2.5e-09  Score=58.03  Aligned_cols=79  Identities=14%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCC---------CCCceE--EEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKS---------DAKSQR--VILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      |.+..|+++.|.|...+.+.+.+.|+++++.......         ....+.  .............|.+++.+|.|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            4578899999999998889999999977643211000         000000  00000112234567888999999999


Q ss_pred             EEeEeCCccc
Q psy8666          70 CLARNSVGTA   79 (124)
Q Consensus        70 C~~~~~~~~~   79 (124)
                      |.+.|..+..
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9998876543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG3513|consensus

Probab=99.04  E-value=2.2e-09  Score=78.10  Aligned_cols=84  Identities=29%  Similarity=0.478  Sum_probs=68.0

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|.++.+.|.+.+.|.|.++|.|.+..+.+     ..++.+..++++.+.+    ++++|.|.|+|.+.|.+|+. ..
T Consensus       438 a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~-----~~r~~i~edGtL~I~n----~t~~DaG~YtC~A~N~~G~a-~~  507 (1051)
T KOG3513|consen  438 AVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQ-----SGRIRILEDGTLEISN----VTRSDAGKYTCVAENKLGKA-ES  507 (1051)
T ss_pred             EEeCCeEEEeeccCCCCcceEEEEcCCccccc-----CceEEECCCCcEEecc----cCcccCcEEEEEEEcccCcc-ce
Confidence            45688999999999999999999998884432     2456677888886544    49999999999999999999 45


Q ss_pred             eEEEEEEeeeeeee
Q psy8666          83 NATLQVAVVIFFIS   96 (124)
Q Consensus        83 ~~~l~v~~~~~~~~   96 (124)
                      ...|.|.....+..
T Consensus       508 ~~~L~Vkd~tri~~  521 (1051)
T KOG3513|consen  508 TGNLIVKDATRITL  521 (1051)
T ss_pred             EEEEEEecCceEEe
Confidence            78888887765544

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.03  E-value=3.5e-09  Score=53.31  Aligned_cols=62  Identities=26%  Similarity=0.468  Sum_probs=42.2

Q ss_pred             CCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCC-cEEEEEEEcCCCccCCeEEEEEe
Q psy8666           6 NEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG-SLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         6 G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      |+.+.|.|.+ .+.+.+.+.|+++++.....     ......... .......|.+++.+|.|.|.|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG-----STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEE-----EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCc-----ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999 66678899999988754421     111122222 22222456788999999999975

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.01  E-value=1.3e-08  Score=55.29  Aligned_cols=76  Identities=13%  Similarity=0.215  Sum_probs=47.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEee--ccCC-CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVE--TSKS-DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~--~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .+.+|+++.|.|.+.+.+.+.+.|++.+..+.  .... ....++.............|.+++.+|.|.|.|.+.+...
T Consensus         8 ~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~   86 (95)
T cd05717           8 TVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV   86 (95)
T ss_pred             EEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC
Confidence            57789999999999888889999986433211  0000 0111211111111112345678899999999999887653

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.01  E-value=2e-08  Score=54.77  Aligned_cols=86  Identities=20%  Similarity=0.208  Sum_probs=57.4

Q ss_pred             EEecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.|. +.|.+++..+..... ...........+-.....+..++.++.|.|+|.+.|..... 
T Consensus        14 ~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~-~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~-   91 (101)
T cd05860          14 FVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSD-HYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA-   91 (101)
T ss_pred             EEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCcccc-ceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE-
Confidence            578999999999999999997 999998876543211 10110000111122223334558899999999999988777 


Q ss_pred             eeeEEEEEE
Q psy8666          81 SRNATLQVA   89 (124)
Q Consensus        81 ~~~~~l~v~   89 (124)
                      +..+.|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            556776653

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>smart00409 IG Immunoglobulin

Probab=98.97  E-value=5e-08  Score=51.11  Aligned_cols=80  Identities=38%  Similarity=0.652  Sum_probs=52.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.+.+.+.|+++ +..+...     .......... .....+..++..|.|.|.|.+.+..+...
T Consensus         5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~-----~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00409        5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES-----GRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC-----CcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            467899999999998878889999998 6655411     1111222211 12223445589999999999998776653


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      . .+.|.|
T Consensus        79 ~-~~~l~V   85 (86)
T smart00409       79 S-TTTLTV   85 (86)
T ss_pred             E-EEEEEE
Confidence            3 355443

>smart00410 IG_like Immunoglobulin like

Probab=98.97  E-value=5e-08  Score=51.11  Aligned_cols=80  Identities=38%  Similarity=0.652  Sum_probs=52.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.+.+.+.|+++ +..+...     .......... .....+..++..|.|.|.|.+.+..+...
T Consensus         5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~-----~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00410        5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES-----GRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC-----CcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            467899999999998878889999998 6655411     1111222211 12223445589999999999998776653


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      . .+.|.|
T Consensus        79 ~-~~~l~V   85 (86)
T smart00410       79 S-TTTLTV   85 (86)
T ss_pred             E-EEEEEE
Confidence            3 355443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.91  E-value=2.3e-08  Score=54.79  Aligned_cols=72  Identities=28%  Similarity=0.439  Sum_probs=48.0

Q ss_pred             EEecCCCEEEEEee-e----------ccCCCeEEEEeCCEEeeccCCCC-CceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKA-E----------GKPEPTIEWYKDGELVETSKSDA-KSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~----------~~p~p~v~w~k~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+++.+.|.. .          ......+.|||++.......... ...+.......+.+...    ..+|.|.|.
T Consensus        11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa----~~eDSG~Y~   86 (104)
T cd05896          11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPA----ELQDSGLYT   86 (104)
T ss_pred             EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeC----ChhhCeEEE
Confidence            35689999999985 1          11233789999975544322111 11244556666776666    899999999


Q ss_pred             EEeEeCCc
Q psy8666          70 CLARNSVG   77 (124)
Q Consensus        70 C~~~~~~~   77 (124)
                      |.+.|...
T Consensus        87 C~~rN~t~   94 (104)
T cd05896          87 CVLRNSTY   94 (104)
T ss_pred             EEECCCCc
Confidence            99998753

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>KOG4222|consensus

Probab=98.89  E-value=7.4e-09  Score=75.56  Aligned_cols=88  Identities=63%  Similarity=1.029  Sum_probs=67.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc-cCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE-QDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.-|..++|.|.+.|.|.|.+.|||+|.....  ......+...+++.+++....+.... .|.|.|.|.+.|..|...
T Consensus        42 vvs~~~patlnc~asG~ppPti~w~k~G~~~~~--~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~av  119 (1281)
T KOG4222|consen   42 VVSKGEPATLNCKASGDPPPTIEWYKDGENVFK--GEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAV  119 (1281)
T ss_pred             hccCCCCceeecCCCCCCCCceecccCCcccCC--CCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccceee
Confidence            456788999999999999999999999963321  12234556788888888876554443 389999999999999887


Q ss_pred             eeeEEEEEEee
Q psy8666          81 SRNATLQVAVV   91 (124)
Q Consensus        81 ~~~~~l~v~~~   91 (124)
                      ++...|.+...
T Consensus       120 Sr~a~L~vavl  130 (1281)
T KOG4222|consen  120 SRGASLIVAVL  130 (1281)
T ss_pred             ecCceEEEEEe
Confidence            88877777654

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.87  E-value=4.9e-08  Score=51.91  Aligned_cols=63  Identities=21%  Similarity=0.391  Sum_probs=44.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+..|+.+.|.|...+ +.+.+.|+++|..+...     .. .......+.+..    ++.+|.|.|.|.+...
T Consensus         7 tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~-----~r-~~~~~~GLlI~~----~~~~dsG~Y~C~s~E~   69 (85)
T cd05872           7 TVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQ-----FS-YRVGTDGLLILV----TSPEHSGTYRCYSEEE   69 (85)
T ss_pred             EEecCCCEEEECCCCC-CCccEEEEECCcccCCC-----cc-eEEeCCCCEEEE----CCHhhCEEEEEEEecC
Confidence            5788999999999876 46799999999876521     12 223333343333    3899999999987743

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.87  E-value=9.2e-08  Score=63.02  Aligned_cols=77  Identities=16%  Similarity=0.302  Sum_probs=50.8

Q ss_pred             EecCCCEEEEEeeeccCCC---eEEEEeCCEEeeccCCCCCceEEEcc-------CCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           3 VAKNEPVTLNCKAEGKPEP---TIEWYKDGELVETSKSDAKSQRVILP-------TGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p---~v~w~k~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      +..|+.+.|.|.+.+.|.+   .+.|+++|..+...............       .........|..++.+|.|.|.|.+
T Consensus       232 ~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A  311 (326)
T PHA02785        232 TSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMA  311 (326)
T ss_pred             ecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEE
Confidence            4569999999999988764   79999999877532111111111111       1112233456788999999999999


Q ss_pred             EeCCccc
Q psy8666          73 RNSVGTA   79 (124)
Q Consensus        73 ~~~~~~~   79 (124)
                      .|..+..
T Consensus       312 ~n~~~~~  318 (326)
T PHA02785        312 FTIPSIS  318 (326)
T ss_pred             EeccCce
Confidence            9987554

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.85  E-value=5.1e-08  Score=52.93  Aligned_cols=68  Identities=18%  Similarity=0.333  Sum_probs=45.4

Q ss_pred             EecCCCEEEEEee-e----ccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           3 VAKNEPVTLNCKA-E----GKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G~~~~l~C~~-~----~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +..|....|.|+- .    ..+.|.++|||++..+....    ..... .....+.    |..+..+|.|.|.|.+.+..
T Consensus         7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~----~~~~~~~~~~~L~----I~~v~~~D~G~YtC~~~~~~   78 (95)
T cd05897           7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN----EKFYSLKGSTYLH----IIDVSLNDSGYYTCKLQFTH   78 (95)
T ss_pred             eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC----cceEecCCCCEEE----EEEcChhhCEEEEEEEEEee
Confidence            4568889999972 2    33677999999998765321    11111 1222333    44559999999999999986


Q ss_pred             cc
Q psy8666          77 GT   78 (124)
Q Consensus        77 ~~   78 (124)
                      +.
T Consensus        79 ~g   80 (95)
T cd05897          79 EG   80 (95)
T ss_pred             CC
Confidence            54

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.84  E-value=8.3e-08  Score=60.12  Aligned_cols=65  Identities=23%  Similarity=0.481  Sum_probs=46.3

Q ss_pred             EecCCCEEEEEeeec-----cCCCeEEEEeCCEEeeccCCCCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           3 VAKNEPVTLNCKAEG-----KPEPTIEWYKDGELVETSKSDAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~-----~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +..|+.+.|.|.+.+     .|.|.++|+|++..+...     ....... .+.+    .|.+++.+|.|.|.|.+....
T Consensus       141 ~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~-----~r~~~~~~~~~L----~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        141 FNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT-----DRIQLRNNNSTL----VIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC-----CCEEEeCCCCEE----EECcCCHHhCEEEEEEEEEeE
Confidence            467999999998753     357899999999987532     1222222 2233    356669999999999998853

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.82  E-value=3.5e-08  Score=64.96  Aligned_cols=74  Identities=26%  Similarity=0.491  Sum_probs=51.5

Q ss_pred             ecCCCEEEEEee-----eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCc-EEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           4 AKNEPVTLNCKA-----EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS-LFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         4 ~~G~~~~l~C~~-----~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .+|+.+.+.|..     .|.|.+.+.|+|+|....        .......+. +.    +..+..+|.|.|.|.+.|..+
T Consensus        39 ~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--------~~~~~~~g~~l~----i~~~~~~DsG~Y~C~a~N~~g  106 (326)
T PHA02785         39 LENEPVILPCPQINTLSSGYNILDILWEKRGADND--------RIIPIDNGSNML----ILNPTQSDSGIYICITKNETY  106 (326)
T ss_pred             hcCCCEEEECCCccccccCCCCceEEEEECCCccc--------eEEEccCCceEE----EcccCcccCeEEEEEEECCCc
Confidence            468999999996     688889999999975321        111122333 33    344588999999999999887


Q ss_pred             cceeeeEEEEEEe
Q psy8666          78 TAVSRNATLQVAV   90 (124)
Q Consensus        78 ~~~~~~~~l~v~~   90 (124)
                      .. ...+.|.|..
T Consensus       107 ~~-~~s~~L~V~~  118 (326)
T PHA02785        107 CD-MMSLNLTIVS  118 (326)
T ss_pred             ce-EEEEEEEEEe
Confidence            65 4566666644

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.82  E-value=3.2e-07  Score=49.84  Aligned_cols=75  Identities=12%  Similarity=0.217  Sum_probs=49.4

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeec--cCC-CCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVET--SKS-DAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~--~~~-~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +.+.+|+++.|.|.+.......+.|++.+..+.-  ... ..+.++.... .+..+ ...|..++.+|.|.|.|.+....
T Consensus         7 vtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~-tL~I~~vq~~D~G~Y~Cqv~t~p   85 (95)
T cd05881           7 VTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNEL-RVSLSNVSLSDEGRYFCQLYTDP   85 (95)
T ss_pred             eEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEE-EEEECcCCcccCEEEEEEEEccc
Confidence            4678999999999998877778899987754321  100 1112222222 23333 34568889999999999887643

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.79  E-value=3.5e-07  Score=48.31  Aligned_cols=67  Identities=28%  Similarity=0.593  Sum_probs=40.7

Q ss_pred             CEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcE---EEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           8 PVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSL---FFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         8 ~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+.|.|.+.+ .|.+.++|+|+|+.+....    ........+..   .....+......|.+.|.|.+.|....
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~   71 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGAT----YSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALP   71 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCce----eeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCC
Confidence            3689999976 6888999999998775321    11111122221   112223333456788999999986543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>KOG4222|consensus

Probab=98.75  E-value=3e-08  Score=72.51  Aligned_cols=92  Identities=32%  Similarity=0.510  Sum_probs=70.3

Q ss_pred             EecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.+.|.. .+.|.|.+.|.|+|..+...   ....+.+...+.+.+.++    ++.|.|.|.|.+.|..|..++
T Consensus       143 ~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~---~~~~~~lisgG~LlIsnv----rksD~GtY~CVatNmvG~ReS  215 (1281)
T KOG4222|consen  143 AAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHY---DVPIIALISGGNLLISNV----RKSDEGTYACVATNMVGERES  215 (1281)
T ss_pred             ccccceeEEeccCCCCCCCCcceeecCCCccccc---cceeEEEecCCcEEEecc----ccCCCceeeeeeccccccccc
Confidence            4468889999984 68899999999999987621   112333455666654444    999999999999999999989


Q ss_pred             eeEEEEEEeeeeeeeeccce
Q psy8666          82 RNATLQVAVVIFFISFFRFK  101 (124)
Q Consensus        82 ~~~~l~v~~~~~~~~~~~~~  101 (124)
                      ....|.|...|.+..-+...
T Consensus       216 ~~A~lsv~e~P~f~~rp~~~  235 (1281)
T KOG4222|consen  216 IPARLSVQEKPWFWKRPKDL  235 (1281)
T ss_pred             ccceeeeccCCccccccccc
Confidence            99999999988766554433

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.74  E-value=1.8e-07  Score=50.45  Aligned_cols=77  Identities=25%  Similarity=0.348  Sum_probs=48.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC-c-cc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV-G-TA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~-~-~~   79 (124)
                      .+..|++++|.|... .+...+.|+|+|......       .  ...........+..++.+|.|.|+|...+.. + +.
T Consensus        12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-------~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~   81 (91)
T cd05751          12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-------K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSE   81 (91)
T ss_pred             ccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-------c--cCCCceeEEEEccCCChhHCEEEEEEEECCCCccCC
Confidence            357899999999774 566778899998753310       0  0111111222345668999999999998752 2 23


Q ss_pred             eeeeEEEEE
Q psy8666          80 VSRNATLQV   88 (124)
Q Consensus        80 ~~~~~~l~v   88 (124)
                      .+..+.|.|
T Consensus        82 ~Sd~lel~V   90 (91)
T cd05751          82 PSDPLELVV   90 (91)
T ss_pred             CCCcEEEEe
Confidence            355555554

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.72  E-value=1.9e-07  Score=49.23  Aligned_cols=79  Identities=23%  Similarity=0.352  Sum_probs=45.9

Q ss_pred             EEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666           9 VTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ   87 (124)
Q Consensus         9 ~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~   87 (124)
                      +.|.|.+. +.|.+.|.|||++..+.....   ................+......|...|.|.+.|+.-........|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~---~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~   78 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKST---VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLE   78 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCccc---ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence            57899976 458889999999998864210   00000111112222222222445678899999997654445566666


Q ss_pred             EEe
Q psy8666          88 VAV   90 (124)
Q Consensus        88 v~~   90 (124)
                      |.+
T Consensus        79 V~y   81 (82)
T cd05883          79 VQY   81 (82)
T ss_pred             EEE
Confidence            654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.69  E-value=3.8e-07  Score=50.25  Aligned_cols=77  Identities=23%  Similarity=0.368  Sum_probs=47.5

Q ss_pred             CEEecCCCEEEEEeeecc-CCCeEEEEeCCE----E-eecc-CC------CCCceEEEcc-CCcEEEEEEEcCCCccCCe
Q psy8666           1 MVVAKNEPVTLNCKAEGK-PEPTIEWYKDGE----L-VETS-KS------DAKSQRVILP-TGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~----~-~~~~-~~------~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g   66 (124)
                      |.+..|+++.|.|..... +...+.|+|...    . +... ..      ....+..... .........|.+++.+|.|
T Consensus         1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            568899999999998875 667899998432    1 1100 00      0111111111 1112334456888999999


Q ss_pred             EEEEEeEeCCc
Q psy8666          67 VYWCLARNSVG   77 (124)
Q Consensus        67 ~y~C~~~~~~~   77 (124)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999987653

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.68  E-value=2.6e-07  Score=57.89  Aligned_cols=83  Identities=16%  Similarity=0.235  Sum_probs=51.9

Q ss_pred             EEecCCCEEEEEeeeccC-----------CCeEEEEeCCEEee--ccCCCC-----CceEEEccCCcEEEEEEEcCCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKP-----------EPTIEWYKDGELVE--TSKSDA-----KSQRVILPTGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-----------~p~v~w~k~g~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~   63 (124)
                      .+.+|+++.|.|.+.+.|           .+.+.|+|.+...-  ......     .........+.+    .|.+++.+
T Consensus        33 ~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L----~I~~v~~~  108 (227)
T PHA02826         33 YAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENL----WIGNVINI  108 (227)
T ss_pred             EecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeE----EECCCChH
Confidence            467899999999986644           45899999875421  110000     001001112333    34566999


Q ss_pred             CCeEEEEEeEeCCccceeeeEEEEEE
Q psy8666          64 DGGVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        64 d~g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      |.|.|.|.+.|..+.. ...+.|.|.
T Consensus       109 DsG~Y~C~a~N~~~~~-~~~i~L~V~  133 (227)
T PHA02826        109 DEGIYICTISSGNICE-ESTIRLTFD  133 (227)
T ss_pred             HCEEEEEEEEECCcce-EEEEEEEEe
Confidence            9999999999977665 445666663

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.68  E-value=3.2e-07  Score=49.42  Aligned_cols=76  Identities=22%  Similarity=0.346  Sum_probs=46.0

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeec--------cC-----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVET--------SK-----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~--------~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      |++++|.|.........+.|++.......        ..     .....+.....++++.    |.+++.+|.|.|.|..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~----I~~l~~~DsG~Y~c~v   76 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLL----IQNLTKEDSGTYTLQI   76 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEE----EccCCchhcEEEEEEE
Confidence            78899999887656668999986432110        00     0011222233344443    4566999999999999


Q ss_pred             EeCCccceeeeEE
Q psy8666          73 RNSVGTAVSRNAT   85 (124)
Q Consensus        73 ~~~~~~~~~~~~~   85 (124)
                      ....+......+.
T Consensus        77 ~~~~~~~~~~~~~   89 (92)
T cd05741          77 ISTNGVTENAKFF   89 (92)
T ss_pred             EcCCCcEEEEEEE
Confidence            9876554333333

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>KOG4221|consensus

Probab=98.66  E-value=2.1e-07  Score=68.73  Aligned_cols=82  Identities=24%  Similarity=0.483  Sum_probs=66.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      ++..|+.+.|.|.+.+.|.|.+.|.|+...+...     .+.....++.+.+...    +..|.|.|+|.+.+..-+..+
T Consensus       151 t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~-----~r~i~lpsG~L~I~~~----qp~d~g~yrc~vt~g~~~r~S  221 (1381)
T KOG4221|consen  151 TLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD-----SRVIVLPSGALEISGL----QPSDTGEYRCVVTGGASQRTS  221 (1381)
T ss_pred             eEecCCcEEEEEEEcCccCceeEEecccccccCC-----CcEEEcCCCcEEeccc----ccCCCceEEEEEecCCcCCcc
Confidence            4567999999999999999999999998866642     3556677888865555    999999999999998777767


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ....|.|...+
T Consensus       222 ~~a~ltv~s~~  232 (1381)
T KOG4221|consen  222 NEAELTVLSDP  232 (1381)
T ss_pred             ceeEEEecCCc
Confidence            78888887544

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.66  E-value=5.4e-07  Score=49.21  Aligned_cols=74  Identities=18%  Similarity=0.331  Sum_probs=44.9

Q ss_pred             CEEecCCCEEEEEeeecc--CCCeEEEEeCCE--Ee---e-cc-CC--CCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGK--PEPTIEWYKDGE--LV---E-TS-KS--DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~--p~p~v~w~k~g~--~~---~-~~-~~--~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      +.+.+|+++.|.|.....  ....+.|||...  ..   . .. ..  ....+....... ......|.+++.+|.|.|.
T Consensus         1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~~Dsg~Y~   79 (98)
T cd04984           1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQTEDEADYY   79 (98)
T ss_pred             CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCChhhCEEEE
Confidence            467899999999998664  456799998432  11   1 00 00  001122222222 2233456888999999999


Q ss_pred             EEeEeC
Q psy8666          70 CLARNS   75 (124)
Q Consensus        70 C~~~~~   75 (124)
                      |.+.+.
T Consensus        80 C~~~~~   85 (98)
T cd04984          80 CQVWDS   85 (98)
T ss_pred             EEEccC
Confidence            987653

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.66  E-value=9.5e-07  Score=49.06  Aligned_cols=76  Identities=21%  Similarity=0.243  Sum_probs=46.6

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCE--E---ee-ccCC---CCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGE--L---VE-TSKS---DAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~--~---~~-~~~~---~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      +.+..|+++.|.|...+.+.+.+.|||...  .   +. ....   ....+..... .........|.+++.+|.|.|.|
T Consensus         8 v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C   87 (109)
T cd04983           8 LSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFC   87 (109)
T ss_pred             eEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEE
Confidence            357789999999999877788899998532  1   00 0000   0112221211 11122334567889999999999


Q ss_pred             EeEeCC
Q psy8666          71 LARNSV   76 (124)
Q Consensus        71 ~~~~~~   76 (124)
                      .+.+..
T Consensus        88 ~~~~~~   93 (109)
T cd04983          88 ALSESG   93 (109)
T ss_pred             EEecCC
Confidence            988653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.65  E-value=5.4e-07  Score=50.28  Aligned_cols=74  Identities=16%  Similarity=0.344  Sum_probs=44.9

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCE--Eee----ccCC-------CCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGE--LVE----TSKS-------DAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~--~~~----~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      +.+.+|+++.|.|...+ +.+.+.|||...  .+.    ....       ....+..............|.+++.+|.|.
T Consensus         8 ~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~   86 (110)
T cd05899           8 LIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAV   86 (110)
T ss_pred             eEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEE
Confidence            35788999999999877 778899998532  111    0000       001111111111122334567789999999


Q ss_pred             EEEEeEeC
Q psy8666          68 YWCLARNS   75 (124)
Q Consensus        68 y~C~~~~~   75 (124)
                      |.|.+.+.
T Consensus        87 Y~Ca~~~~   94 (110)
T cd05899          87 YLCASSLG   94 (110)
T ss_pred             EEEEeeCC
Confidence            99998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.65  E-value=7.8e-07  Score=49.29  Aligned_cols=73  Identities=22%  Similarity=0.389  Sum_probs=44.0

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEeCC--EE---eeccC----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYKDG--EL---VETSK----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k~g--~~---~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+++.|.|...+.. ...+.|||..  ..   +.-..    .....+........ .....|.+++.+|.|.|.|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~~~~~Dsg~Y~Ca   89 (106)
T cd04980          11 SVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGT-DFTLTISRVEPEDAAVYYCQ   89 (106)
T ss_pred             EECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCC-EEEEEECCCChHHCEEEEEE
Confidence            567899999999987654 5679999743  21   11000    00011121212222 23345688899999999998


Q ss_pred             eEeC
Q psy8666          72 ARNS   75 (124)
Q Consensus        72 ~~~~   75 (124)
                      +.+.
T Consensus        90 ~~~~   93 (106)
T cd04980          90 QYGT   93 (106)
T ss_pred             EeCC
Confidence            8654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.64  E-value=1.2e-06  Score=48.59  Aligned_cols=80  Identities=23%  Similarity=0.287  Sum_probs=47.9

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCE-----EeeccCC---------CCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGE-----LVETSKS---------DAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~-----~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      +.+|+++.|.|.........+.|||...     .+..-..         ....+.....++++.+    ++++..|.|.|
T Consensus        10 ~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I----~~v~~~D~G~Y   85 (105)
T cd05774          10 VAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLI----QNVTQKDTGFY   85 (105)
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEE----ecCCcccCEEE
Confidence            4579999999976444445789999521     1111000         0112333445566654    44599999999


Q ss_pred             EEEeEeCCccceeeeEEE
Q psy8666          69 WCLARNSVGTAVSRNATL   86 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l   86 (124)
                      .|.+.+...........|
T Consensus        86 ~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          86 TLQTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEEEeCCccEEEEEEEE
Confidence            999998764433334443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.58  E-value=3.3e-06  Score=46.75  Aligned_cols=85  Identities=22%  Similarity=0.298  Sum_probs=49.4

Q ss_pred             cCCCEEEEEeeeccC------CCeEEEEeCC-----E-Eeec-cCCC----CCc--eEEEccCCcEEEEEEEcCCCccCC
Q psy8666           5 KNEPVTLNCKAEGKP------EPTIEWYKDG-----E-LVET-SKSD----AKS--QRVILPTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p------~p~v~w~k~g-----~-~~~~-~~~~----~~~--~~~~~~~~~~~~~~~i~~~~~~d~   65 (124)
                      .|+++.|.|.....+      .+.+.|+|..     . .+.. ....    ...  ...............|.+++.+|.
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999987543      4679999862     1 1110 0000    001  111101111122334677899999


Q ss_pred             eEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          66 GVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        66 g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      |.|.|.+.+..+.. ...+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~-~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDE-QDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCce-EEEEEEEEEE
Confidence            99999999876554 5677777654

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.54  E-value=6e-06  Score=45.66  Aligned_cols=85  Identities=18%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             cCCCEEEEEeeeccC------CCeEEEEeCCE----E---eeccCC-----C-CCceEEEccCCcEEEEEEEcCCCccCC
Q psy8666           5 KNEPVTLNCKAEGKP------EPTIEWYKDGE----L---VETSKS-----D-AKSQRVILPTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p------~p~v~w~k~g~----~---~~~~~~-----~-~~~~~~~~~~~~~~~~~~i~~~~~~d~   65 (124)
                      .|+++.|.|.....|      ...+.|+|...    .   +.....     . ...+..............|.+++.+|.
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            488999999876543      35699998531    1   100000     0 001111111111122335677799999


Q ss_pred             eEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          66 GVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        66 g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      |.|.|.+.+..+.. ...+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~-~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDE-SVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccce-EEEEEEEEEE
Confidence            99999999877765 4566666643

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.51  E-value=6.4e-06  Score=46.45  Aligned_cols=76  Identities=20%  Similarity=0.262  Sum_probs=42.6

Q ss_pred             EEecCCCEEEEEeeecc----CCCeEEE-Ee--------------CCEEeeccCCCCCceEEE--ccCCcEEEEEEEcCC
Q psy8666           2 VVAKNEPVTLNCKAEGK----PEPTIEW-YK--------------DGELVETSKSDAKSQRVI--LPTGSLFFLRVVHGK   60 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~----p~p~v~w-~k--------------~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~   60 (124)
                      .+..|+.+.|.|.....    +...+.| |+              +|+...........+...  ...... ....|.++
T Consensus         9 ~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~d-aSI~I~nv   87 (116)
T cd05879           9 YGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKD-GSIVIHNL   87 (116)
T ss_pred             EEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCe-eEEEEccC
Confidence            46679999999998653    2357899 33              222211000000011111  111111 22345777


Q ss_pred             CccCCeEEEEEeEeCCcc
Q psy8666          61 KEQDGGVYWCLARNSVGT   78 (124)
Q Consensus        61 ~~~d~g~y~C~~~~~~~~   78 (124)
                      +.+|.|.|.|...|+...
T Consensus        88 ~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          88 DYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             CcccCEEEEEEEEcCCCc
Confidence            999999999999997654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.50  E-value=1.2e-05  Score=44.98  Aligned_cols=85  Identities=20%  Similarity=0.282  Sum_probs=48.6

Q ss_pred             cCCCEEEEEeeeccC----------CCeEEEEeC--CEEee----ccCC-----CCCceEEEc--cCCcEEEEEEEcCCC
Q psy8666           5 KNEPVTLNCKAEGKP----------EPTIEWYKD--GELVE----TSKS-----DAKSQRVIL--PTGSLFFLRVVHGKK   61 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p----------~p~v~w~k~--g~~~~----~~~~-----~~~~~~~~~--~~~~~~~~~~i~~~~   61 (124)
                      .|+++.|.|.....+          ...+.|+|.  ++...    ....     ....+....  ..........|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            488999999986543          256899985  22111    0000     000111111  011111224567789


Q ss_pred             ccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          62 EQDGGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        62 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      .+|.|.|.|.+....... ...+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~-~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDE-QDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcc-eEEEEEEEEE
Confidence            999999999998865555 4577777654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.49  E-value=8.5e-06  Score=45.66  Aligned_cols=34  Identities=18%  Similarity=0.322  Sum_probs=24.4

Q ss_pred             EEcCCCccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        56 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      .|.+++.+|.|.|.|.+....... +..+.|.|..
T Consensus        77 ~I~nl~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~g  110 (112)
T cd05900          77 EITELRSNDSGTYRCEVMHGIEDN-YDTVEVQVKG  110 (112)
T ss_pred             EEeecccccCEEEEEEEecCCCCc-eeEEEEEEEe
Confidence            345569999999999999766555 4556666543

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.45  E-value=8.5e-06  Score=45.24  Aligned_cols=74  Identities=23%  Similarity=0.399  Sum_probs=43.0

Q ss_pred             CEEecCCCEEEEEeeecc-CCCeEEEEeCCEE---------eeccCCC-------C-CceEEEc-cCCcEEEEEEEcCCC
Q psy8666           1 MVVAKNEPVTLNCKAEGK-PEPTIEWYKDGEL---------VETSKSD-------A-KSQRVIL-PTGSLFFLRVVHGKK   61 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~---------~~~~~~~-------~-~~~~~~~-~~~~~~~~~~i~~~~   61 (124)
                      +.+..|++++|.|..... ....+.|||....         +......       . ..+.... ..........|.+++
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            568899999999998653 3457999984321         0000000       0 0111111 111222334567889


Q ss_pred             ccCCeEEEEEeEe
Q psy8666          62 EQDGGVYWCLARN   74 (124)
Q Consensus        62 ~~d~g~y~C~~~~   74 (124)
                      .+|.|.|.|...+
T Consensus        81 ~~Dsg~YyCa~~~   93 (107)
T cd07700          81 PEDSGTYFCMTVG   93 (107)
T ss_pred             HHHCEEEEEeEcC
Confidence            9999999998754

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.41  E-value=5.9e-06  Score=44.86  Aligned_cols=65  Identities=22%  Similarity=0.254  Sum_probs=41.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR   73 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~   73 (124)
                      .+..|++++|.|.... ..-.+.|+|+|......      ...............|..++.+|.|.|+|...
T Consensus        11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~------~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL------HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce------ecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            4668999999997654 44568899988653210      00001112222333566779999999999864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.40  E-value=1.1e-05  Score=44.04  Aligned_cols=33  Identities=21%  Similarity=0.363  Sum_probs=24.7

Q ss_pred             EEEcCCCccCCeEEEEEeEeCCccceeeeEEEEE
Q psy8666          55 RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        55 ~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      ..|.+++.+|.|.|.|.+.+..+.. ...+.|.|
T Consensus        67 L~I~~v~~~D~G~Y~C~v~~~~~~~-~~~i~l~v   99 (100)
T cd05713          67 LRIHNVRASDEGLYTCFFQSDGFYE-EATVELKV   99 (100)
T ss_pred             EEEEcCChhhCEEEEEEEecCCcEE-EEEEEEEE
Confidence            3456779999999999999876654 45666654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.38  E-value=5e-06  Score=46.75  Aligned_cols=73  Identities=19%  Similarity=0.384  Sum_probs=43.6

Q ss_pred             EEecCCCEEEEEeeec--cCCCeEEEEeC--CEEe---e-ccCCC--------CCceEEEccCC-cEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEG--KPEPTIEWYKD--GELV---E-TSKSD--------AKSQRVILPTG-SLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~--~p~p~v~w~k~--g~~~---~-~~~~~--------~~~~~~~~~~~-~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|...+  .+.+.+.|||.  +...   . .....        ...+....... .......|.+++.+|
T Consensus         9 ~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   88 (116)
T cd04982           9 TREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKED   88 (116)
T ss_pred             EeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHH
Confidence            5678999999999876  57788999984  2211   0 00000        01122221111 122334456779999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .|.|.|.+..
T Consensus        89 sg~Y~C~~~~   98 (116)
T cd04982          89 SATYYCAYWE   98 (116)
T ss_pred             CEEEEEEEec
Confidence            9999998764

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.37  E-value=2.5e-06  Score=46.17  Aligned_cols=71  Identities=24%  Similarity=0.388  Sum_probs=43.5

Q ss_pred             cCCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEE--EEcCCCccCCeEEEEEeEeCCc
Q psy8666           5 KNEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR--VVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .|+.+.|.|.+.+. |. ..++|+++|..+.....  ........++...+..  .+......+.+.|.|.+.+...
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~--~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT--TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee--ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            57899999999987 53 57999999988764211  0111122333333322  2211122489999999998654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.35  E-value=5.5e-06  Score=45.22  Aligned_cols=83  Identities=18%  Similarity=0.242  Sum_probs=48.6

Q ss_pred             ecCCCEEEEEeeec-cCCCeEEEEeCCEEeecc-CC---CC------Cc-eEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           4 AKNEPVTLNCKAEG-KPEPTIEWYKDGELVETS-KS---DA------KS-QRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         4 ~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~-~~---~~------~~-~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      ..|+++.|.|.... .....+.|+|........ ..   ..      .. .+.... .. .....|.+++.+|.|.|.|.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~-~~-~~sL~I~~~~~~DsG~Y~c~   79 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFS-QN-DYSLQISNLKMEDAGSYRAE   79 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEec-CC-ceeEEECCCchHHCEEEEEE
Confidence            36899999998754 445578999875433211 10   00      00 011111 11 12234577799999999999


Q ss_pred             eEeCCccceeeeEEEEE
Q psy8666          72 ARNSVGTAVSRNATLQV   88 (124)
Q Consensus        72 ~~~~~~~~~~~~~~l~v   88 (124)
                      .....+......+.|.|
T Consensus        80 v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          80 INTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEcCCCCeEEEEEEEEe
Confidence            99877665445555544

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.34  E-value=2.2e-05  Score=41.46  Aligned_cols=66  Identities=23%  Similarity=0.377  Sum_probs=38.7

Q ss_pred             EEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEE--EEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFL--RVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         9 ~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      +.|.|.+.+ .|.+.+.|++++..+....    ........+...+.  ..+......+.+.|.|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK----LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce----eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            578999865 4888999999998875321    11111122222222  111121334567999999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>KOG4194|consensus

Probab=98.33  E-value=4.6e-06  Score=58.46  Aligned_cols=113  Identities=18%  Similarity=0.199  Sum_probs=69.0

Q ss_pred             ecCCCEEEEEeeecc--CCCeEEEEeCCEEeeccCCCCCceEEEccC--------CcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666           4 AKNEPVTLNCKAEGK--PEPTIEWYKDGELVETSKSDAKSQRVILPT--------GSLFFLRVVHGKKEQDGGVYWCLAR   73 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~--p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~d~g~y~C~~~   73 (124)
                      .-|.++.|.|.+.+.  .+-++.|.++........-. +.-......        ...+......++...|.|.|.|.+.
T Consensus       516 l~g~nirftC~a~sssasplsi~WR~dnevq~rv~ve-d~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvt  594 (873)
T KOG4194|consen  516 LIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVE-DFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVT  594 (873)
T ss_pred             hhccceEEEEEeccCCCCCceeEeeeccccCcccchh-cchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEe
Confidence            358899999998763  34468899976533321100 000000000        0011112234558999999999999


Q ss_pred             eCCccceeeeEEEEEEeeeeeeeeccceeh-hhhhheeeeeecCc
Q psy8666          74 NSVGTAVSRNATLQVAVVIFFISFFRFKLS-AYLYDLFRGVVNKT  117 (124)
Q Consensus        74 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  117 (124)
                      |.+|+..+..+.|.|...|.|...|+--+- ...-+-+.|...|.
T Consensus       595 N~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~  639 (873)
T KOG4194|consen  595 NHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGH  639 (873)
T ss_pred             cccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCC
Confidence            999999999999999999988777654332 22223455555444

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.32  E-value=1.5e-05  Score=44.18  Aligned_cols=86  Identities=20%  Similarity=0.344  Sum_probs=48.8

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCE-----Eee-ccC--------CCCCceEE-EccCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGE-----LVE-TSK--------SDAKSQRV-ILPTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~-----~~~-~~~--------~~~~~~~~-~~~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+..|+++.|.|... ......+.|++...     .+. ...        ........ ............|.+++.+|.
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~Ds   91 (114)
T PF07686_consen   12 TVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDS   91 (114)
T ss_dssp             EEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGE
T ss_pred             EEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcC
Confidence            567899999999988 44566899998321     111 000        00001111 111111223345678899999


Q ss_pred             eEEEEEeEeCCccceeeeEEEE
Q psy8666          66 GVYWCLARNSVGTAVSRNATLQ   87 (124)
Q Consensus        66 g~y~C~~~~~~~~~~~~~~~l~   87 (124)
                      |.|.|.............+.|.
T Consensus        92 G~Y~C~v~~~~~~~~~~~~~L~  113 (114)
T PF07686_consen   92 GTYFCQVSTSNEQSFGNGTKLT  113 (114)
T ss_dssp             EEEEEEEEESSEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCCEECCcEEEE
Confidence            9999998887333334444444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.29  E-value=3.8e-05  Score=41.74  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=43.5

Q ss_pred             CCEEEEEeeeccC---CCeEEEEeCCEE----e--eccCC----CC--CceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           7 EPVTLNCKAEGKP---EPTIEWYKDGEL----V--ETSKS----DA--KSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         7 ~~~~l~C~~~~~p---~p~v~w~k~g~~----~--~~~~~----~~--~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      +++.|.|.....+   ...+.|+|....    +  .....    ..  ..+..............|.+++.+|.|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999986543   346899985421    1  00000    00  01111111111122335677799999999999


Q ss_pred             eEe-CCccceeeeEEEEE
Q psy8666          72 ARN-SVGTAVSRNATLQV   88 (124)
Q Consensus        72 ~~~-~~~~~~~~~~~l~v   88 (124)
                      +.. +.|.. ...+.|.|
T Consensus        81 v~~~~~g~~-~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNR-QKVTTLTV   97 (98)
T ss_pred             EEeCCCCcE-EEEEEEEe
Confidence            876 44554 44555554

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.27  E-value=2.8e-05  Score=41.32  Aligned_cols=61  Identities=16%  Similarity=0.258  Sum_probs=39.7

Q ss_pred             EecCCCEEEEEeeeccC--CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           3 VAKNEPVTLNCKAEGKP--EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p--~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      +..|+.++|.|.....+  .+.+.|+..+......        .......+.+    ..+...|.|.|.|.+...
T Consensus        11 lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--------~~~~~ktL~~----~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          11 VLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--------LNQDKKTLNL----VQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             eecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--------ccCCccEEEe----ceeCcccCCEEEEEEEEC
Confidence            45799999999985544  4489999765443210        0112223333    334899999999999765

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.26  E-value=4.7e-05  Score=42.85  Aligned_cols=78  Identities=17%  Similarity=0.183  Sum_probs=42.4

Q ss_pred             CEEecCCCEEEEEeeeccC----CCeEEEEeC----CEE--eeccCCC----CC----ceEEEc-cCCcEEEEEEEcCCC
Q psy8666           1 MVVAKNEPVTLNCKAEGKP----EPTIEWYKD----GEL--VETSKSD----AK----SQRVIL-PTGSLFFLRVVHGKK   61 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p----~p~v~w~k~----g~~--~~~~~~~----~~----~~~~~~-~~~~~~~~~~i~~~~   61 (124)
                      +.+..|+++.|.|.....+    ...+.|++.    +..  +......    ..    .+.... ..........|.+++
T Consensus         8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~   87 (115)
T cd05880           8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ   87 (115)
T ss_pred             EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence            3567899999999975432    235899742    211  1100000    00    011111 000111223456779


Q ss_pred             ccCCeEEEEEeEeCCcc
Q psy8666          62 EQDGGVYWCLARNSVGT   78 (124)
Q Consensus        62 ~~d~g~y~C~~~~~~~~   78 (124)
                      .+|.|.|.|.+.|....
T Consensus        88 ~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          88 PTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             hhhCEEEEEEEEeCCCC
Confidence            99999999999986553

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.25  E-value=8.4e-06  Score=44.67  Aligned_cols=72  Identities=11%  Similarity=0.173  Sum_probs=42.6

Q ss_pred             EecCCCEEEEEeeec-cCCCe--EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCC-eEEEEEeEeCCcc
Q psy8666           3 VAKNEPVTLNCKAEG-KPEPT--IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG-GVYWCLARNSVGT   78 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~-~p~p~--v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~-g~y~C~~~~~~~~   78 (124)
                      +.+|+.+.+.|.+.+ .|.+.  +.|||++..+.........    ...........+. +++.|. ..|.|.+.+....
T Consensus        13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~----~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNT----KSPVNAPATITIT-VDREDHGANFSCETELDLRP   87 (100)
T ss_pred             ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecccc----CCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence            467999999999875 57776  6999999887642100000    0001111111111 245555 5999999987654


Q ss_pred             c
Q psy8666          79 A   79 (124)
Q Consensus        79 ~   79 (124)
                      .
T Consensus        88 ~   88 (100)
T cd05755          88 E   88 (100)
T ss_pred             c
Confidence            3

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.25  E-value=1.6e-05  Score=40.59  Aligned_cols=57  Identities=35%  Similarity=0.578  Sum_probs=34.9

Q ss_pred             EEEEEeeeccC-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           9 VTLNCKAEGKP-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         9 ~~l~C~~~~~p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      +.|.|.+.+.+ .+.+.|+ .......       . .............+..+..+|.|.|.|.+.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~-------~-~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY-DSNPSFN-------S-NSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE-TEEEEEE-------E-EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE-ecCCcee-------e-eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            89999998877 7789999 2111110       0 0011111112223456689999999999876

...

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.24  E-value=4.5e-05  Score=41.53  Aligned_cols=83  Identities=20%  Similarity=0.195  Sum_probs=44.5

Q ss_pred             CCCEEEEEeeeccCC-CeEEEEeCCE----Eee-c---cCCCC----CceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           6 NEPVTLNCKAEGKPE-PTIEWYKDGE----LVE-T---SKSDA----KSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         6 G~~~~l~C~~~~~p~-p~v~w~k~g~----~~~-~---~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      |++++|.|....... -.+.|+|...    .+. -   .....    ..+..............|.+++.+|.|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            788999998654332 2589998421    111 0   00000    111111111112233456777999999999998


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      ........+..+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7644333355666655

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.24  E-value=6.8e-05  Score=42.21  Aligned_cols=77  Identities=16%  Similarity=0.217  Sum_probs=42.6

Q ss_pred             EEecCCCEEEEEeeeccC----CCeEEEEeCCE------Eeec--cCC--C-CC----ceEEEccC-CcEEEEEEEcCCC
Q psy8666           2 VVAKNEPVTLNCKAEGKP----EPTIEWYKDGE------LVET--SKS--D-AK----SQRVILPT-GSLFFLRVVHGKK   61 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p----~p~v~w~k~g~------~~~~--~~~--~-~~----~~~~~~~~-~~~~~~~~i~~~~   61 (124)
                      .+..|+.+.|.|......    ...+.|++...      .+..  ...  . ..    .+...... ........|.+++
T Consensus         9 ~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   88 (116)
T cd05715           9 YAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQ   88 (116)
T ss_pred             EEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCC
Confidence            567899999999875432    24589986321      1110  000  0 00    00011111 1111233557779


Q ss_pred             ccCCeEEEEEeEeCCcc
Q psy8666          62 EQDGGVYWCLARNSVGT   78 (124)
Q Consensus        62 ~~d~g~y~C~~~~~~~~   78 (124)
                      .+|.|.|.|.+.+....
T Consensus        89 ~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          89 FTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             cccCEEEEEEEEeCCCC
Confidence            99999999999987554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.24  E-value=2.7e-05  Score=42.44  Aligned_cols=76  Identities=17%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             CEEecCCCEEEEEeeec-cCCCeEEEEeCCEE-----eeccCC---CCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGEL-----VETSKS---DAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~-----~~~~~~---~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      +.+.+|+++.|.|.... .....+.|+|....     +.....   ....+.... ..........|.+++.+|.|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            45789999999998764 35667899985421     110000   011112221 112223445567889999999999


Q ss_pred             EeEeCC
Q psy8666          71 LARNSV   76 (124)
Q Consensus        71 ~~~~~~   76 (124)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            877643

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.23  E-value=7.4e-05  Score=39.58  Aligned_cols=66  Identities=21%  Similarity=0.375  Sum_probs=39.8

Q ss_pred             EEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCC-cEEEEEE--EcCCCccCCeEEEEEeEeCCcc
Q psy8666           9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTG-SLFFLRV--VHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         9 ~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~--i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      +.|.|.+.+ +|.+.+.|+++|..+....    ........+ ..++...  +......+...|.|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~----~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAP----TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcc----eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            678999876 4888999999998765321    111112222 3222221  1122345679999999987643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.20  E-value=0.00015  Score=40.57  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=26.7

Q ss_pred             EEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        54 ~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      ...|.+++.+|.|.|.|......... ...+.|.|..
T Consensus        73 sL~i~nv~~~D~G~Y~C~v~~g~~~~-~~~v~L~V~g  108 (110)
T cd05902          73 SLVLSRLRYSDSGTYRCEVVLGINDE-QDTVPLEVTG  108 (110)
T ss_pred             EEEECCCCHHHCEEEEEEEEECCccc-EEEEEEEEEE
Confidence            34567889999999999999865444 5567777654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.14  E-value=8.8e-05  Score=44.81  Aligned_cols=92  Identities=15%  Similarity=0.211  Sum_probs=54.2

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccC-CCC------CceEEEccCCcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSK-SDA------KSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR   73 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~-~~~------~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~   73 (124)
                      .+.+|+++.|.|... +...+.+.|+|....+.... ...      ..+..............|.+++.+|+|.|.|...
T Consensus        26 ~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~  105 (189)
T PHA02987         26 TVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFN  105 (189)
T ss_pred             EEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEE
Confidence            578999999999974 55678899998643222110 000      0111111111111233456679999999999877


Q ss_pred             eC-CccceeeeEEEEEEeeee
Q psy8666          74 NS-VGTAVSRNATLQVAVVIF   93 (124)
Q Consensus        74 ~~-~~~~~~~~~~l~v~~~~~   93 (124)
                      -. .|..++...-|.|.....
T Consensus       106 tfp~G~~~~gt~CLtVt~~~~  126 (189)
T PHA02987        106 TLLSKNNEKGVVCLNVTTDSY  126 (189)
T ss_pred             ecCCCCCceeEEEEEEEchhh
Confidence            64 442335677777766544

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.03  E-value=0.00047  Score=38.88  Aligned_cols=34  Identities=21%  Similarity=0.412  Sum_probs=26.3

Q ss_pred             EEcCCCccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        56 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      .|.+++..|.|.|.|......... ...+.|.|..
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCccc-EEEEEEEEEE
Confidence            456679999999999999877665 5677777654

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.03  E-value=0.00022  Score=37.74  Aligned_cols=67  Identities=19%  Similarity=0.346  Sum_probs=38.3

Q ss_pred             EEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEE--EEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           9 VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFL--RVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         9 ~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      +.|.|.+.+ .|...++|+|+|..+.....   .......++.....  ..+......+...|.|.+.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~---~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKY---LKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCcee---eEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            578999876 57778999999998653210   01111112222222  122111345678999999986543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.03  E-value=0.00016  Score=40.60  Aligned_cols=74  Identities=23%  Similarity=0.304  Sum_probs=43.3

Q ss_pred             CEEecCCCEEEEEeeecc-CCCeEEEEeC--CEEe--ec---cCC--CCCceEEEcc-CCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGK-PEPTIEWYKD--GELV--ET---SKS--DAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~-p~p~v~w~k~--g~~~--~~---~~~--~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      +.+..|+++.|.|..... ....+.|||.  +..+  ..   ...  ....+..... .........|..++.+|.|.|.
T Consensus         9 v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~   88 (116)
T cd07706           9 VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYF   88 (116)
T ss_pred             eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEE
Confidence            357889999999997653 4566899984  2211  10   000  0112222211 1112233456788999999999


Q ss_pred             EEeEe
Q psy8666          70 CLARN   74 (124)
Q Consensus        70 C~~~~   74 (124)
                      |.+..
T Consensus        89 C~~~~   93 (116)
T cd07706          89 CALST   93 (116)
T ss_pred             EEEEC
Confidence            98875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.03  E-value=0.00032  Score=38.42  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=23.6

Q ss_pred             EEEcCCCccCCeEEEEEeEeC-CccceeeeEEEEE
Q psy8666          55 RVVHGKKEQDGGVYWCLARNS-VGTAVSRNATLQV   88 (124)
Q Consensus        55 ~~i~~~~~~d~g~y~C~~~~~-~~~~~~~~~~l~v   88 (124)
                      ..|.+++.+|.|.|.|.+.+. .|.. ...+.|.|
T Consensus        66 L~I~nv~~sD~GtY~C~v~~~p~g~~-~~~~~L~V   99 (100)
T cd05888          66 LILRNAVQADEGKYKCRVITFPAGNF-EAELVLTV   99 (100)
T ss_pred             EEEecCccccceEEEEEEEeCCCCCe-eeEEEEEe
Confidence            346777999999999999984 4443 44555554

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.98  E-value=0.00026  Score=39.95  Aligned_cols=74  Identities=19%  Similarity=0.318  Sum_probs=42.1

Q ss_pred             CEEecCCCEEEEEeeeccC--CCeEEEEeCC--EEe--e--cc---CC-----CCCceEEEcc-CCcEEEEEEEcCCCcc
Q psy8666           1 MVVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELV--E--TS---KS-----DAKSQRVILP-TGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~--~--~~---~~-----~~~~~~~~~~-~~~~~~~~~i~~~~~~   63 (124)
                      +.+..|++++|.|......  ...+.|||..  ..+  .  ..   ..     ....++.... .....+...|.+++.+
T Consensus         7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   86 (117)
T cd04981           7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE   86 (117)
T ss_pred             eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence            3578899999999875432  4568999842  211  1  00   00     0011111111 1112223456788999


Q ss_pred             CCeEEEEEeEe
Q psy8666          64 DGGVYWCLARN   74 (124)
Q Consensus        64 d~g~y~C~~~~   74 (124)
                      |.|.|.|....
T Consensus        87 Dsa~YyCa~~~   97 (117)
T cd04981          87 DTAVYYCARGL   97 (117)
T ss_pred             HCEEEEEEEEc
Confidence            99999997764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd00096 Ig Immunoglobulin domain

Probab=97.93  E-value=0.00016  Score=35.75  Aligned_cols=66  Identities=36%  Similarity=0.516  Sum_probs=39.1

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +.+.|.+.+.+...+.|++++.........  ................+...+..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            368899888677889999988765422100  000011111222223344557789999999988765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.91  E-value=0.00014  Score=40.11  Aligned_cols=72  Identities=14%  Similarity=0.209  Sum_probs=42.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEE-------ee-ccC-CCC--------CceEEEccCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGEL-------VE-TSK-SDA--------KSQRVILPTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~-------~~-~~~-~~~--------~~~~~~~~~~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.........+.|||....       +. ... ...        ..+....... ......|..++.+|
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~sD   80 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS-NSFVLTLKNFQKEN   80 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC-CEEEEEECCCCHHH
Confidence            467899999999886544567899984321       11 100 000        1111111112 23345567889999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .|.|.|...+
T Consensus        81 sgtY~Ca~~~   90 (104)
T cd05720          81 EGYYFCSVAS   90 (104)
T ss_pred             CEEEEEEEcc
Confidence            9999997653

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.82  E-value=0.00038  Score=36.04  Aligned_cols=66  Identities=21%  Similarity=0.446  Sum_probs=37.2

Q ss_pred             EEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEE--cCCCccCCeEEEEEeEeCC
Q psy8666           9 VTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV--HGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         9 ~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~d~g~y~C~~~~~~   76 (124)
                      +.|.|.+.+. |. ..+.|+|+|..+....  .........++.......+  ......+...|.|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~--~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGV--STTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCE--EECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            5799999886 54 4789999998643210  0011111233443333222  1223456789999987653

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.80  E-value=0.0012  Score=35.97  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=22.9

Q ss_pred             EEcCCCccCCeEEEEEeEeC-CccceeeeEEEEE
Q psy8666          56 VVHGKKEQDGGVYWCLARNS-VGTAVSRNATLQV   88 (124)
Q Consensus        56 ~i~~~~~~d~g~y~C~~~~~-~~~~~~~~~~l~v   88 (124)
                      .|.+++.+|.|.|.|..... .|.. ...+.|.|
T Consensus        63 ~i~nv~~~D~G~Y~C~v~tfP~G~~-~~~~~l~~   95 (96)
T cd05887          63 MLENVGFSDIGVYICKAVTFPLGNT-QSSTTVTV   95 (96)
T ss_pred             EEeCCCccccEEEEEEEEeCCCCCe-eEEEEEEE
Confidence            45677999999999998764 4544 45556554

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.78  E-value=0.00073  Score=38.20  Aligned_cols=73  Identities=16%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             EEecCCCEEEEEeeeccC------CCeEEEEeCCEE-----ee--ccCCC-----CCceEEEc-cCCcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKP------EPTIEWYKDGEL-----VE--TSKSD-----AKSQRVIL-PTGSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p------~p~v~w~k~g~~-----~~--~~~~~-----~~~~~~~~-~~~~~~~~~~i~~~~~   62 (124)
                      .+..|+.+.|.|......      ...+.|||....     +.  .....     ...+.... ..........|.+++.
T Consensus        10 ~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~   89 (119)
T cd05712          10 SVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQP   89 (119)
T ss_pred             EEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCCh
Confidence            567899999999865221      235789985321     11  00000     00111111 1112223345678899


Q ss_pred             cCCeEEEEEeEe
Q psy8666          63 QDGGVYWCLARN   74 (124)
Q Consensus        63 ~d~g~y~C~~~~   74 (124)
                      +|.|.|.|....
T Consensus        90 ~Dsg~Y~C~~~~  101 (119)
T cd05712          90 EDSGKYFFRVEL  101 (119)
T ss_pred             hhCeEEEEEEEc
Confidence            999999998755

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.77  E-value=0.00069  Score=36.58  Aligned_cols=68  Identities=22%  Similarity=0.367  Sum_probs=39.7

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ++...|.|.+.|. |.. .++|+++|.......  .........++....... ..+...+...|.|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~--~~~~~~~~~d~ty~~~s~-l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDV--ESGEILPNGDGTYQLWVT-LEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccc--cccceEECCCCeEEEEEE-EEECCCCCCEEEEEEEeCC
Confidence            5679999999996 544 689999996332110  001111122333322222 2235568899999998754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA03376 BARF1; Provisional

Probab=97.72  E-value=0.0021  Score=39.21  Aligned_cols=74  Identities=22%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             EEecCCCEEEEEeeecc---CCCeEEEEeCCE----Ee--------eccCCCCCceEEEccCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGK---PEPTIEWYKDGE----LV--------ETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~---p~p~v~w~k~g~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g   66 (124)
                      ....|+.+.|.|.-...   +.-.|.|+|.+.    .+        ...++..........+. ......|.+++.+|.|
T Consensus        22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~-gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-NTFFLVVTAANISHDG  100 (221)
T ss_pred             hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC-CeEEEEEEeeeecCCc
Confidence            45679999999986522   334588999432    11        11111111111111111 2234456677999999


Q ss_pred             EEEEEeEeCC
Q psy8666          67 VYWCLARNSV   76 (124)
Q Consensus        67 ~y~C~~~~~~   76 (124)
                      .|+|......
T Consensus       101 tY~C~fQkge  110 (221)
T PHA03376        101 NYLCRMKLGE  110 (221)
T ss_pred             eEEEEEEcCC
Confidence            9999888654

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.67  E-value=0.0022  Score=35.17  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=24.3

Q ss_pred             EEcCCCccCCeEEEEEeEe-CCccceeeeEEEEE
Q psy8666          56 VVHGKKEQDGGVYWCLARN-SVGTAVSRNATLQV   88 (124)
Q Consensus        56 ~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~~l~v   88 (124)
                      .|.+++.+|.|.|.|...+ +.|.. +..+.|.|
T Consensus        66 ~i~nl~~~D~G~Y~C~v~t~P~g~~-~~~~~L~V   98 (99)
T cd05886          66 SLSRLELEDEGVYICEFATFPTGNR-ESQLNLTV   98 (99)
T ss_pred             EEcCCccccCEEEEEEEEeCCCCCe-EEEEEEEE
Confidence            4567799999999999999 45544 55666665

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.61  E-value=0.0018  Score=35.15  Aligned_cols=70  Identities=20%  Similarity=0.393  Sum_probs=41.9

Q ss_pred             ecCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           4 AKNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ..|+...|.|.+.+. |.. .+.|+++|..+....  .........+++..+...+ .+...+...|.|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~--~~~~~~~~~dgTy~~~s~L-~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGV--VSTELIPNGDWTYQILVML-ETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCc--eecceEECCCCcEEEEEEE-EEcCCCCCEEEEEEEeCC
Confidence            357789999999985 544 579999998765320  0111112233343333332 224456778999988754

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.51  E-value=0.0025  Score=33.89  Aligned_cols=70  Identities=30%  Similarity=0.480  Sum_probs=40.1

Q ss_pred             CCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEE--EEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           6 NEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         6 G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      |+.+.+.|.+ .+.|.|.++|+.++......   ..........+....  ...+...+..+...+.|.+.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVAS---NTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEE---EEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeee---eeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            4589999976 57799999999988776211   001112223333222  1222222334678899999987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>smart00406 IGv Immunoglobulin V-Type

Probab=97.44  E-value=0.0025  Score=32.89  Aligned_cols=64  Identities=22%  Similarity=0.297  Sum_probs=34.3

Q ss_pred             CEEEEEeeeccCCC--eEEEEeCCE----EeeccC------C---CCCceEEEccC-CcEEEEEEEcCCCccCCeEEEEE
Q psy8666           8 PVTLNCKAEGKPEP--TIEWYKDGE----LVETSK------S---DAKSQRVILPT-GSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         8 ~~~l~C~~~~~p~p--~v~w~k~g~----~~~~~~------~---~~~~~~~~~~~-~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      ++.|.|.......+  .+.|++...    .+....      .   ....+...... ........|.+++.+|.|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            36899988765443  789998432    111100      0   00111111111 12223345678899999999995

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.43  E-value=0.0026  Score=34.43  Aligned_cols=68  Identities=22%  Similarity=0.391  Sum_probs=41.8

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .|....|.|.+.+. |.. .++|.|+|..+. ..  .........+++.+....+ .+...+...|.|.+....
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~--~~~~~~p~~d~tyq~~s~l-~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KV--EQSDLSFSKDWTFYLLKST-EFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECC-Cc--EECcEEECCCCCEEEEEEE-EECCCCCCeEEEEEEECC
Confidence            35567899999985 443 479999999865 21  1122222334444433332 235677888999988743

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.42  E-value=0.00059  Score=39.59  Aligned_cols=40  Identities=20%  Similarity=0.174  Sum_probs=31.8

Q ss_pred             EcCCCccCCeEEEEEeEeCCccceeeeEEEEEEeeeeeeee
Q psy8666          57 VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF   97 (124)
Q Consensus        57 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~   97 (124)
                      |.+++..|.|.|.|.+.+..+.. ...+.|.|..+|.+...
T Consensus         5 i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~   44 (139)
T cd05771           5 LPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLS   44 (139)
T ss_pred             ECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEe
Confidence            56679999999999999877776 66788888887766433

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.40  E-value=0.0022  Score=37.16  Aligned_cols=72  Identities=22%  Similarity=0.337  Sum_probs=38.9

Q ss_pred             cCCCEEEEEeeecc-CC-CeEEEEeCCEEeecc---CCC-CCceEEEccCCcEEEEE--EEcCCCccCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PE-PTIEWYKDGELVETS---KSD-AKSQRVILPTGSLFFLR--VVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~---~~~-~~~~~~~~~~~~~~~~~--~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .|+.+.|.|.+.+. |. +.+.|+++|......   ... .........++......  .+......+...|.|.+....
T Consensus        52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            57788999999886 54 479999998542210   000 00111122334433322  222212234678999987754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.40  E-value=0.0057  Score=33.34  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=17.3

Q ss_pred             EEcCCCccCCeEEEEEeEeCC
Q psy8666          56 VVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus        56 ~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .|.+++.+|.|.|.|......
T Consensus        63 ~i~nvt~~D~G~Y~C~~~t~P   83 (96)
T cd05889          63 SFNNATEEDVGLYCCSLVTYP   83 (96)
T ss_pred             EEcCCCcccCEEEEEEEEeCC
Confidence            456779999999999987753

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.37  E-value=0.0037  Score=33.93  Aligned_cols=69  Identities=20%  Similarity=0.342  Sum_probs=39.8

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .++...|.|.+.+. |.. .++|.++|..+....  .........+++..+...+ .+...+...|.|.+....
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~--~~~~~~~~~Dgty~~~s~L-~v~~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGV--SETRYYPRQDLSFQKFSYL-NFTPEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCce--EEeeeEeCCCCcEEEEEEE-EEECCCCCeEEEEEEeCC
Confidence            35557999999985 543 579999998765310  0011112233333333222 224556779999988753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.28  E-value=0.0029  Score=34.67  Aligned_cols=69  Identities=20%  Similarity=0.265  Sum_probs=39.9

Q ss_pred             cCCCEEEEEeeecc-C-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc---CCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-P-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ---DGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---d~g~y~C~~~~~~   76 (124)
                      .++.+.|.|.+.+. | .-.+.|+++|..+....  .........+++......+.- ...   +...|.|.+....
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~--~~~~~~~~~dgty~~~s~L~v-~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGV--QTSTTEQQSDNTYSLSSYLTL-TKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEECCEECcccE--eccccEECCCCCEEEEEEEEE-cHHHhCCCCeEEEEEEecC
Confidence            35678999999875 5 34689999998874221  001111222444433332211 232   4688999988754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.22  E-value=0.01  Score=33.26  Aligned_cols=30  Identities=30%  Similarity=0.713  Sum_probs=24.0

Q ss_pred             ecCCCEEEEEeeecc-CC-CeEEEEeCCEEee
Q psy8666           4 AKNEPVTLNCKAEGK-PE-PTIEWYKDGELVE   33 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~   33 (124)
                      ..|+.++|.|.+.+. |. -.++|+|||..+.
T Consensus        19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~   50 (111)
T cd05772          19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELS   50 (111)
T ss_pred             CCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence            357778999999875 54 4789999999875

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>KOG3515|consensus

Probab=97.21  E-value=0.00042  Score=50.14  Aligned_cols=79  Identities=23%  Similarity=0.291  Sum_probs=52.8

Q ss_pred             EecCCCEEEEEeeeccC-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKP-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.++| .+.+.|++.++...       .+.....+..+.+...    .+...++|.|.+.|..+....
T Consensus        19 ~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-------~~~~~~~~~~~~~~~~----~~~~~~~~~c~a~ns~~~~~~   87 (741)
T KOG3515|consen   19 LRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-------GRYATIADPTLVTTGD----VRDTVAELNCRAFNSVGMPSR   87 (741)
T ss_pred             hccCCcceeeeecCCCCCCcceEEEecCcccc-------cccccccCCceeeecc----hhhhhhhhhhhhcccccCcee
Confidence            46799999999998775 56799999876544       1222223334433333    567778899999988766655


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      +...+.+.++|
T Consensus        88 ~~~~l~v~~~p   98 (741)
T KOG3515|consen   88 CPMILDVDYPP   98 (741)
T ss_pred             cceeeccccCc
Confidence            56666666554

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.13  E-value=0.0064  Score=32.96  Aligned_cols=68  Identities=19%  Similarity=0.345  Sum_probs=38.0

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc---cCCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE---QDGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~   76 (124)
                      .+.+.|.|.+.+. |. -.++|+++|..+....  .........++.......+. +..   .+...|.|.+....
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~--~~s~~~~~~~~Ty~~~S~L~-v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVA--ASTAPQKEEGSTFSTTSELN-VTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEECcCce--eecccEECCCCcEEEEEEEE-EchHHhcCCCeEEEEEEECC
Confidence            3558899999885 54 3579999998763211  11111122233333222221 122   25678999988754

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.13  E-value=0.0018  Score=35.18  Aligned_cols=65  Identities=14%  Similarity=0.168  Sum_probs=36.2

Q ss_pred             CEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEE--EEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           8 PVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         8 ~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      ...+.|.+. +.|.+.|.|+++......      .......++....  ...+......|...|.|.+.+....
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~------~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNAN------TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCee------EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            467789865 779999999987321110      1111122333222  2222222345678899999997543

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.13  E-value=0.0028  Score=34.45  Aligned_cols=65  Identities=20%  Similarity=0.304  Sum_probs=35.9

Q ss_pred             CEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEE--EEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           8 PVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFL--RVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         8 ~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .....|.+ .|.|.+.|.|+++.....      ........++.....  ..+......+...|.|.+.+....
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~~~~~~------~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          17 VTVATCVSANGKPPATISWETTLGGEA------ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeCCCCcc------eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            46678987 588999999998721111      011112223332221  111122345568899999987644

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.04  E-value=0.0039  Score=34.00  Aligned_cols=70  Identities=19%  Similarity=0.329  Sum_probs=40.5

Q ss_pred             EEecCCCEEE-EEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEE--EEcCCCccCCeEEEEEeEeCCc
Q psy8666           2 VVAKNEPVTL-NCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR--VVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         2 ~~~~G~~~~l-~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .+.+|+.+.+ .|.+ .+.|.+.|.|+.+......      .......++......  .+...+..|...+.|.+.....
T Consensus        12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~------~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE------SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             EeecCcceeEEEEEccCCccCCEeEEeCCCCCccc------eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            3456777777 7875 5789999999986433221      111122233332222  2222245677889999988654

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.04  E-value=0.0046  Score=34.05  Aligned_cols=70  Identities=21%  Similarity=0.478  Sum_probs=38.6

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEcc--CCcEEEEEEEcCCCc---cCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILP--TGSLFFLRVVHGKKE---QDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~   76 (124)
                      .+..+.|.|.+.|. |.. .+.|+|+|..+..... .........  +++..+...+. +..   .+...|.|.+....
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~-~~~~~~~~~~~dgTy~~~s~L~-v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKY-VTTAPMQEPGGNESYFLYSKLT-VSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccc-cccCcccccCCCCeEEEEEEEE-EcHHHhcCCCcEEEEeEeCC
Confidence            46789999999986 443 4699999987643210 000111111  23333332221 133   24577999988754

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.99  E-value=0.0019  Score=32.43  Aligned_cols=51  Identities=27%  Similarity=0.517  Sum_probs=31.6

Q ss_pred             ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .-|+.+.+.|+..+   ..+.|++++..+...            .........    . ++.|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~------------~~~~~~~~~----~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGS------------DEKYLSLNH----F-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCC---CCceEEeCCccCCCC------------CceEEeecc----C-CCCceEEEEeCC
Confidence            46889999997542   228999998544421            111111111    3 778999998754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.99  E-value=0.012  Score=30.91  Aligned_cols=69  Identities=22%  Similarity=0.338  Sum_probs=40.5

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .++.+.|.|.+.+. |.. .+.|+++|..+....   ...... ..++.......+ .+...+...|.|.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~---~~~~~~~~~dgty~~~s~l-~v~~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGV---ETTPPPPNSDGTYSVTSSL-TVTWNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTE---EEEEEEEETTSEEEEEEEE-EEETTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeee---eecccccccccceeeeEEE-EecCCCCCEEEEEEEECCC
Confidence            47789999999876 544 589999998765321   011111 233333332221 2234556689999887543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.84  E-value=0.025  Score=30.80  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=36.0

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc-CCeEEEEEeEeC
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ-DGGVYWCLARNS   75 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-d~g~y~C~~~~~   75 (124)
                      +....|.|.+.+. |.. .++|.++|..+....  .... ......+...... ..+... ....|.|.+...
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~--~~~~-~~~~~dty~~~S~-L~vt~~~~~~~ysC~V~H~   84 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILGS--QKSE-KDKDNDVYSTTSW-LTVTKDSLGKKFRCIYKHE   84 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEECcCCe--Eecc-EecCCCEEEEEEE-EEECchhCCCeEEEEEEEC
Confidence            4568999999985 543 479999998754210  0011 1112222222222 122333 345599998874

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.69  E-value=0.023  Score=30.93  Aligned_cols=68  Identities=13%  Similarity=0.254  Sum_probs=38.2

Q ss_pred             cCCCEEEEEeeecc--CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc---CCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK--PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ---DGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~--p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---d~g~y~C~~~~~~   76 (124)
                      .|+.+.|.|.+.+.  |.. .++|.|++.......  . .......+++.++...+ .+...   +...|.|.+....
T Consensus        13 ~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~--~-~~~~~~~dgty~~~s~l-~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696          13 LTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKAS--I-QPPESHNNATLSVTSTL-NVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             cCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEE--e-cccccCCCCCEEEEEEE-EeCHHHccCCCcEEEEEECCC
Confidence            47889999999988  433 479999875332110  0 11112234444433332 12333   3567999988754

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.61  E-value=0.024  Score=30.99  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=22.9

Q ss_pred             EecCCCEEEEEeeec-cCC--CeEEEEeCCEEee
Q psy8666           3 VAKNEPVTLNCKAEG-KPE--PTIEWYKDGELVE   33 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~-~p~--p~v~w~k~g~~~~   33 (124)
                      +..|..+++.|.+.+ .|.  ..+.|++....+.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~   45 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLP   45 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceec
Confidence            457999999999864 354  4588998665555

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.48  E-value=0.061  Score=30.35  Aligned_cols=70  Identities=17%  Similarity=0.332  Sum_probs=38.9

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccC-CcEEEEEEEcCCCcc----CCeEEEEEeEeCCcc
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPT-GSLFFLRVVHGKKEQ----DGGVYWCLARNSVGT   78 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~----d~g~y~C~~~~~~~~   78 (124)
                      ++.+.|.|.+.+. |.. .+.|+|+|..+..... . .......+ +.......+ .+...    +...|.|.+......
T Consensus        18 ~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~-~-~~~~~~~~~gTYs~~S~L-~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          18 KRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVA-T-DPQALRENTSTYSISSRL-RVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             CCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcc-c-ccceecCCCCeEEEEEEE-EEChHHhccCCCeEEEEEEEeCCc
Confidence            5568999999886 543 6899999987653210 0 01111222 233222221 22332    257899998876433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.27  E-value=0.029  Score=28.49  Aligned_cols=49  Identities=22%  Similarity=0.405  Sum_probs=28.3

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+.+.+.|..    ..++.|++ |......           .+..+...    .......|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~-----------~~~tlnLG----s~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEV-----------SNTLLDLG----SRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Ccccccc-----------cccEEecc----CcccCCCcceEecCcc
Confidence            4468889955    35699999 5543321           01111111    1135667999998776

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.00  E-value=0.1  Score=28.31  Aligned_cols=67  Identities=21%  Similarity=0.398  Sum_probs=36.7

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~   76 (124)
                      ++.+.|.|.+.+. |.. .++|+|+|.. ... . .........++.......+ .+...+   ...|.|.+....
T Consensus        16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~-~-~~~~~~~~~dgty~~~s~L-~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TSG-V-KTYPAVLQSGGLYTASSQL-TVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCcEEEEEEEeeEECCCcEEEEeECCEE-CCC-c-EECCCEeCCCCCEEEEEEE-EEeHHHcCCCCcEEEEEEeCC
Confidence            4568999999886 443 4789999987 311 0 0011111113333322221 123443   567999988753

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG1480|consensus

Probab=95.97  E-value=0.0043  Score=45.12  Aligned_cols=82  Identities=28%  Similarity=0.471  Sum_probs=52.9

Q ss_pred             EecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..+....+.|.. .+.|...+.|++++......     .+........+    ++..++..|.|.|+|.+.|..+..++
T Consensus       141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd-----~n~~~~~d~~l----i~~~arlsd~~nytc~a~ni~~~r~~  211 (909)
T KOG1480|consen  141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPD-----ANVIRASDHNL----IISQARLSDSGNYTCEATNIVAKRKS  211 (909)
T ss_pred             ecccccccccccCcccchhhhhhccccCCCCCcc-----ccchhhhcCCc----cccchhhhhcccceeeeehhhccccc
Confidence            3455667777774 57788889999998765531     11112222333    23444889999999999999988765


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ....+.+.....
T Consensus       212 ~~~~v~vyv~gg  223 (909)
T KOG1480|consen  212 DPATVQVYVNGG  223 (909)
T ss_pred             cceEEEEEEcCc
Confidence            555555544433

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=95.84  E-value=0.15  Score=28.80  Aligned_cols=71  Identities=11%  Similarity=0.093  Sum_probs=39.6

Q ss_pred             EEecCCCEEEEEeeeccCCC---eEEEEeCCE-E--eeccC-----CC--CCceEE-EccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP---TIEWYKDGE-L--VETSK-----SD--AKSQRV-ILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p---~v~w~k~g~-~--~~~~~-----~~--~~~~~~-~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+..|..+.|.|...+....   .+.|+|... .  .+...     +.  ...... .-......+...+.+.+.+|.+.
T Consensus         9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~   88 (115)
T cd05721           9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI   88 (115)
T ss_pred             EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence            46678889999998775443   478998421 1  11110     00  001111 11122223444567779999999


Q ss_pred             EEEEe
Q psy8666          68 YWCLA   72 (124)
Q Consensus        68 y~C~~   72 (124)
                      |.|..
T Consensus        89 Y~Ca~   93 (115)
T cd05721          89 YFCKI   93 (115)
T ss_pred             EEEEe
Confidence            99953

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA02633 hypothetical protein; Provisional

Probab=95.45  E-value=0.083  Score=26.27  Aligned_cols=38  Identities=18%  Similarity=0.474  Sum_probs=24.9

Q ss_pred             CCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          48 TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        48 ~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      ...+++...    ..+|+|.|.|...|..-.. .-.+.|.|..
T Consensus        17 ~~nLwilpa----~~sDSGiYiC~~rn~t~c~-~~si~l~V~~   54 (63)
T PHA02633         17 CNNMLILNP----TQSDSGIYMCITKNETYSD-MMKFDLCICL   54 (63)
T ss_pred             cccEEEecc----ccccCcEEEEEEcCCCeeE-EEEEEEEEee
Confidence            445555555    8899999999998765443 2345555543

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.43  E-value=0.13  Score=29.61  Aligned_cols=76  Identities=14%  Similarity=0.191  Sum_probs=37.2

Q ss_pred             CCCEEEEEeeecc-----CCCeEEEEeCCEEeeccCCCCCceEEEc------------cCCcEEEEEEEcCCCccCCeEE
Q psy8666           6 NEPVTLNCKAEGK-----PEPTIEWYKDGELVETSKSDAKSQRVIL------------PTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         6 G~~~~l~C~~~~~-----p~p~v~w~k~g~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+++.++|.+...     +.-.+.|..+++.+....... ......            .+.++.+..     ...-.|.|
T Consensus        27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~-~~~~~~~f~sa~i~~l~kG~aSL~~~~-----~~a~~GnY  100 (130)
T PF08204_consen   27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTN-NKSTSDNFPSAKISELLKGNASLKMDK-----SDAVEGNY  100 (130)
T ss_dssp             -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTT-TEEEEGGGTT-BEGGGGGTB--EEEEH-----HHHH-EEE
T ss_pred             CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCcc-ceecccCccccchhHhhCCCEEEEEcc-----hhccccce
Confidence            5678899988542     223489999888654321100 000000            011122221     12228999


Q ss_pred             EEEeEeCCccceeeeEEEEE
Q psy8666          69 WCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l~v   88 (124)
                      +|.+....... ...+.|..
T Consensus       101 TCeVt~~~~eg-e~~i~Lk~  119 (130)
T PF08204_consen  101 TCEVTELSREG-ETTIELKY  119 (130)
T ss_dssp             EEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEEecCCCc-eEEEEEEE
Confidence            99999877665 44566655

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.26  E-value=0.32  Score=26.70  Aligned_cols=67  Identities=19%  Similarity=0.324  Sum_probs=36.5

Q ss_pred             cCCCEEEEEeeecc--CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc---cCCeEEEEEeEeCCc
Q psy8666           5 KNEPVTLNCKAEGK--PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE---QDGGVYWCLARNSVG   77 (124)
Q Consensus         5 ~G~~~~l~C~~~~~--p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~~   77 (124)
                      .+..+.+.|.+.+.  |. -.+.|.++|.. ...   . .......++...+... ..+..   .....|.|.+.....
T Consensus        18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~---~-t~~~~~~dgTys~~S~-L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAV---Q-TSAESDQCGCYSVSSV-LPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             cCCccEEEEEEeccCCCCCeEEEEEECCcc-CcE---E-cCcccCCCCCEEEEEE-EEeCHHHhcCCCeEEEEEECCCc
Confidence            35678999999884  33 25899999875 110   0 1111122333332222 22234   234679999887654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.22  E-value=0.5  Score=26.27  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=25.9

Q ss_pred             EEcCCCccCCeEEEEEeEeCCccceeeeEEEEEE
Q psy8666          56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        56 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      .|..++..|.|.|.-.+.+..|......+.+.|.
T Consensus        74 lIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   74 LIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             EEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            3677799999999999999999886666666553

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=93.28  E-value=0.23  Score=32.02  Aligned_cols=49  Identities=29%  Similarity=0.418  Sum_probs=33.9

Q ss_pred             CCCeEEEEeC-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666          19 PEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus        19 p~p~v~w~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ..|...|..+ |+.+..     .+...+...+.+.+...    ...++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~g-----n~~~nIT~TG~L~~~~F----~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSG-----NSYVNITETGKLMFKNF----QESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCC-----CCeEEEccCceEEeecc----ccccCCceEEEEEEEe
Confidence            4688899874 444442     13445667777766655    8999999999888644

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03042 CD47-like protein; Provisional

Probab=92.13  E-value=2.2  Score=27.86  Aligned_cols=70  Identities=21%  Similarity=0.316  Sum_probs=40.6

Q ss_pred             CCCEEEEEeeecc-----CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           6 NEPVTLNCKAEGK-----PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         6 G~~~~l~C~~~~~-----p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+++.+.|.....     -.-.+.|..++........        ....++.+. .    ...-.|.|+|.+.+..... 
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~--------tn~aSL~~~-f----~~~l~GNYTCEv~~l~n~g-   96 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN--------TNTSSLKFN-F----SKNLSGNYTCEAINKFNKI-   96 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC--------CcceEEEEe-c----cccCCCceeEEEeecccCc-
Confidence            5678889987542     2345899998876542110        001112111 1    3444799999999876655 


Q ss_pred             eeeEEEEEE
Q psy8666          81 SRNATLQVA   89 (124)
Q Consensus        81 ~~~~~l~v~   89 (124)
                      .+...|.-.
T Consensus        97 k~~IeLk~~  105 (286)
T PHA03042         97 KNTIELQYV  105 (286)
T ss_pred             cEEEEEEEE
Confidence            345555544

>KOG4597|consensus

Probab=91.68  E-value=0.41  Score=33.54  Aligned_cols=73  Identities=23%  Similarity=0.254  Sum_probs=45.9

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeC---CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKD---GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +-+++..++.|...|.+.+.|+|.+.   +..+.-.   . ...........+-.+.|.+....|.|-|.|.+.+..|..
T Consensus       208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~---~-nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~  283 (560)
T KOG4597|consen  208 VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR---P-NQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL  283 (560)
T ss_pred             cccchhhcccccccCCcCceeeeehhhccccceeec---C-ccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence            34677889999999999999999752   2221110   0 111111111222233455668899999999999988876

>KOG3515|consensus

Probab=90.67  E-value=2.8  Score=31.45  Aligned_cols=68  Identities=21%  Similarity=0.364  Sum_probs=40.2

Q ss_pred             ecCCCEEEEEee--eccCCCeEEEEeCCEEeeccCC-CCC-ceEE---E-ccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           4 AKNEPVTLNCKA--EGKPEPTIEWYKDGELVETSKS-DAK-SQRV---I-LPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         4 ~~G~~~~l~C~~--~~~p~p~v~w~k~g~~~~~~~~-~~~-~~~~---~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .++..+.+.|..  .+.|.+.+.|+.++........ ... ....   . .....+.+..+    +..+.|.|+|.+.+.
T Consensus       110 ~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~----Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  110 VDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVS----RKADNGNYTCPANNR  185 (741)
T ss_pred             hcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEE----EecCCceeEcccccc
Confidence            356678888954  3567788999988876543210 000 0000   0 11222333333    788999999999995

>PHA02982 hypothetical protein; Provisional

Probab=87.26  E-value=4.5  Score=25.57  Aligned_cols=84  Identities=14%  Similarity=0.268  Sum_probs=46.0

Q ss_pred             ecCCCEEEEEeee-ccCCCeEEEEeCC-EEeeccCC---CCC----------ceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           4 AKNEPVTLNCKAE-GKPEPTIEWYKDG-ELVETSKS---DAK----------SQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         4 ~~G~~~~l~C~~~-~~p~p~v~w~k~g-~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      -.++.+.|.|... +.-..+..|+++. ..+.+...   ...          .......++. .+...|.+++.+..|=|
T Consensus        37 ~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~-~STLTIkk~~i~N~GCY  115 (251)
T PHA02982         37 TVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGN-SSTFTMKKPDPQNLGCF  115 (251)
T ss_pred             cCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEecc-ceeEEeccCCcccCCce
Confidence            3478899999853 3334567899743 33331110   000          0111112222 23334566688999999


Q ss_pred             EEEeEeCCccceeeeEEEEE
Q psy8666          69 WCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l~v   88 (124)
                      .|.+....+..+.+..-|.|
T Consensus       116 tc~~ks~~~k~E~c~kCl~V  135 (251)
T PHA02982        116 TCEAKDAEGKEETCEKCLEI  135 (251)
T ss_pred             EEEEecCCCchheeheeeeE
Confidence            99999876555444444444

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=85.35  E-value=3.8  Score=21.50  Aligned_cols=13  Identities=31%  Similarity=0.700  Sum_probs=11.5

Q ss_pred             CccCCeEEEEEeE
Q psy8666          61 KEQDGGVYWCLAR   73 (124)
Q Consensus        61 ~~~d~g~y~C~~~   73 (124)
                      ...|.|.+.|.+.
T Consensus        51 ~~~d~G~w~C~a~   63 (80)
T PF05790_consen   51 TTEDSGTWVCTAS   63 (80)
T ss_dssp             TCGGSEEEEEEEE
T ss_pred             CCCCCEEEEEEEc
Confidence            5799999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=84.50  E-value=10  Score=25.79  Aligned_cols=21  Identities=29%  Similarity=0.762  Sum_probs=16.4

Q ss_pred             CEEEEEeeecc-CCC-eEEEEeC
Q psy8666           8 PVTLNCKAEGK-PEP-TIEWYKD   28 (124)
Q Consensus         8 ~~~l~C~~~~~-p~p-~v~w~k~   28 (124)
                      .+.+.|.+.|. |.. .+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            46899999987 443 4689999

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=83.38  E-value=5  Score=21.97  Aligned_cols=60  Identities=22%  Similarity=0.375  Sum_probs=32.4

Q ss_pred             EEEEEe-eeccCCCeEEEEeC--CEEeeccCCCCCceEEEccCCcEEE--EEEEcCCCccCCeEEEEEeEeCC
Q psy8666           9 VTLNCK-AEGKPEPTIEWYKD--GELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         9 ~~l~C~-~~~~p~p~v~w~k~--g~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ..-.|. +.|.|++.|+|..+  |.. .       .+.....++...+  ..........|.....|.+....
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e-------tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~   87 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEA-E-------FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRN   87 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCce-e-------eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecc
Confidence            344687 56889999999853  332 1       1111122333221  11222225667788889888753

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA03052 Hypothetical protein; Provisional

Probab=82.98  E-value=4.6  Score=20.52  Aligned_cols=31  Identities=23%  Similarity=0.562  Sum_probs=23.0

Q ss_pred             EEecCCCEEEEEeee-ccC--CCeEEEEeCCEEe
Q psy8666           2 VVAKNEPVTLNCKAE-GKP--EPTIEWYKDGELV   32 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p--~p~v~w~k~g~~~   32 (124)
                      .+..|.++++.|.+. +.|  .+.+.|.-|+...
T Consensus         8 ~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          8 VTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             EEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            567899999999975 333  4557788787765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		2e-31
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		7e-31
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		7e-31
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		2e-30
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		2e-08
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		5e-08
3kld_A	384	Ptprg Cntn4 Complex Length = 384		5e-08
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		6e-08
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-07
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		2e-07
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-07
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		3e-07
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		4e-07
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-07
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-07
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-07
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		8e-07
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		9e-07
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		9e-07
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		1e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-06
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-06
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		1e-06
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		1e-06
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-06
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-06
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		2e-06
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		4e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		1e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-05
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		9e-05
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		9e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		1e-04
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		2e-04
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		4e-04
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		5e-04
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		6e-04
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		8e-04
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		8e-04
2c5d_C	195	Structure Of A Minimal Gas6-Axl Complex Length = 19		8e-04

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 76/92 (82%), Gaps = 1/92 (1%)
Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 19  LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 61  KEQ-DGGVYWCLARNSVGTAVSRNATLQVAVV 91
           K + D GVY C+ARN +G AVS +A+L+VA++
Sbjct: 79  KSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score =  128 bits (322), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +VV KNEP TLNCK EGKPEPTIEW+KDGE V T+  + KS RV    G+LFF R + GK
Sbjct: 19  LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTN--EKKSHRVQFKDGALFFYRTMQGK 76
Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           KEQDGG YWC+A+N VG AVSR+A+LQ+AV+
Sbjct: 77  KEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score =  128 bits (322), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +VV KNEP TLNCK EGKPEPTIEW+KDGE V T+  + KS RV    G+LFF R + GK
Sbjct: 19  LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTN--EKKSHRVQFKDGALFFYRTMQGK 76
Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           KEQDGG YWC+A+N VG AVSR+A+LQ+AV+
Sbjct: 77  KEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 73/89 (82%), Gaps = 1/89 (1%)
Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 19  LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 61  KEQ-DGGVYWCLARNSVGTAVSRNATLQV 88
           K + D GVY C+ARN +G AVS +A+L+V
Sbjct: 79  KSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 9   VTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ-DGG 66
           V LNC AE  +  P I+W KDG ++     D K Q   LP GSL    ++H +  + D G
Sbjct: 39  VLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQ---LPNGSLLIQNILHSRHHKPDEG 95
Query: 67  VYWCLAR-NSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLYD 108
           +Y C A     G+ +SR A + VA  + F+S     ++A++ D
Sbjct: 96  LYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTE-SITAFMGD 137

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 9   VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
           V L+C+ +G P+P I W  +G  V+         R  +  GSL    + +  K QD G Y
Sbjct: 25  VKLSCEVKGNPKPHIRWKLNGTDVDI----GMDFRYSVVDGSLL---INNPNKTQDAGTY 77
Query: 69  WCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
            C+A NS GT VSR A LQ A +  F +  R  +S
Sbjct: 78  QCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVS 112

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 9   VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
           V L+C+ +G P+P I W  +G  V+         R  +  GSL    + +  K QD G Y
Sbjct: 26  VKLSCEVKGNPKPHIRWKLNGTDVDI----GMDFRYSVVDGSLL---INNPNKTQDAGTY 78
Query: 69  WCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
            C+A NS GT VSR A LQ A +  F +  R  +S
Sbjct: 79  QCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVS 113

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + V++ +PV LNC  EG  EP I+W KDG +V+         ++ +P     ++  +  K
Sbjct: 12  LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQ------NLDQLYIPVSEQHWIGFLSLK 65
Query: 61  --KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
             +  D G YWC   +   T +S+   L V  V FF
Sbjct: 66  SVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFF 101

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           VV +    T+ C A G P+P I W+KD   V+TS ++ + ++  L + S+  L++    +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQ--LRSESIGALQIEQ-SE 175
Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQV 88
           E D G Y C+A NS GT  S  A L V
Sbjct: 176 ESDQGKYECVATNSAGTRYSAPANLYV 202

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 11  LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
           L C   G P+P++ W K D  L E S+        +L +GSL     +H  +++D G Y 
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRI------AVLESGSLR----IHNVQKEDAGQYR 169
Query: 70  CLARNSVGTAVSRNATLQVAV 90
           C+A+NS+GTA S+   L+V V
Sbjct: 170 CVAKNSLGTAYSKLVKLEVEV 190

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 9   VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
           V + CKA G P P I W K+      +K D  + R  L  G   FL++    +E+D G Y
Sbjct: 130 VLMTCKAIGNPTPNIYWIKN-----QTKVDMSNPRYSLKDG---FLQI-ENSREEDQGKY 180
Query: 69  WCLARNSVGTAVSRNATLQVAV 90
            C+A NS+GT  S+   L V V
Sbjct: 181 ECVAENSMGTEHSKATNLYVKV 202

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           VV K    T+ C A G P+P I W+KD   V+ + S+ + ++  L +G+L     +   +
Sbjct: 119 VVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQ--LRSGAL----QIESSE 172
Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           E D G Y C+A NS GT  S  A L V V
Sbjct: 173 ESDQGKYECVATNSAGTRYSAPANLYVRV 201

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 9   VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
           V + CKA G P P I W K+      +K D  + R  L  G   FL++    +E+D G Y
Sbjct: 128 VLMTCKAIGNPTPNIYWIKN-----QTKVDMSNPRYSLKDG---FLQI-ENSREEDQGKY 178
Query: 69  WCLARNSVGTAVSRNATLQVAV 90
            C+A NS+GT  S+   L V V
Sbjct: 179 ECVAENSMGTEHSKATNLYVKV 200

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           VV K    T+ C A G P+P I W+KD   V+ + S+ + ++  L +G+L     +   +
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQ--LRSGAL----QIESSE 173
Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQV 88
           E D G Y C+A NS GT  S  A L V
Sbjct: 174 ESDQGKYECVATNSAGTRYSAPANLYV 200

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           VV +    T+ C A G P+P I W+KD   V+ S S+ + ++  L +G+L     +   +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ--LRSGAL----QIESSE 172
Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           E D G Y C+A NS G   S  A L V V
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRV 201

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           VV +    T+ C A G P+P I W+KD   V+ S S+ + ++  L +G+L     +   +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ--LRSGAL----QIESSE 172
Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           E D G Y C+A NS G   S  A L V V
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRV 201

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           VV +    T+ C A G P+P I W+KD   V+ S S+ + ++  L +G+L     +   +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ--LRSGAL----QIESSE 172
Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           E D G Y C+A NS G   S  A L V V
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRV 201

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           VV +    T+ C A G P+P I W+KD   V+ S S+ + ++  L +G L     +   +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQ--LRSGGL----QIESSE 172
Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           E D G Y C+A NS G   S  A L V V
Sbjct: 173 ETDQGKYECVASNSAGVRYSSPANLYVRV 201

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           +V   + + + C+A+G P P+  W ++      +K    S R    +G+L       G+ 
Sbjct: 28  IVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRR--SGTLVIDFRSGGRP 85
Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVA 89
           E+  G Y C ARN  GTA+S    LQV+
Sbjct: 86  EEYEGEYQCFARNKFGTALSNRIRLQVS 113

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 7   EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
           + VTL C A+G PEPT+ W KDGE +E  + D + + +     S   +R V    E +  
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDE-KHIFSDDSSELTIRNVDKNDEAE-- 268
Query: 67  VYWCLARNSVGTAVSRNATLQVAV 90
            Y C+A N  G    ++A++ + V
Sbjct: 269 -YVCIAENKAG---EQDASIHLKV 288

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 7   EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
           E V L C+A   P  T  W  +G    T        R  L  G+L    +++  K QD G
Sbjct: 22  EQVLLACRARASPPATYRWKMNG----TEMKLEPGSRHQLVGGNLV---IMNPTKAQDAG 74
Query: 67  VYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAY 105
           VY CLA N VGT VSR A L+   +  F    R  + A+
Sbjct: 75  VYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAH 113

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
              + E +T +C+A G PEP I W+++G+L+E      ++++ IL  GS   L  V    
Sbjct: 15  TAERGEEMTFSCRASGSPEPAISWFRNGKLIE------ENEKYIL-KGSNTEL-TVRNII 66
Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
             DGG Y C A N  G    + A LQV V    I  
Sbjct: 67  NSDGGPYVCRATNKAGED-EKQAFLQVFVQPHIIQL 101

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 5   KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
           + E +T +C+A G PEP I W+++G+L+E      ++++ IL  GS   L  V      D
Sbjct: 112 RGEEMTFSCRASGSPEPAISWFRNGKLIE------ENEKYIL-KGSNTEL-TVRNIINSD 163
Query: 65  GGVYWCLARNSVGTAVSRNATLQVAV 90
           GG Y C A N  G    + A LQV V
Sbjct: 164 GGPYVCRATNKAGED-EKQAFLQVFV 188

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 11  LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGV 67
           + CKA G P P I W + DG    T+  D    R I   G L F   R    ++E    V
Sbjct: 30  IECKASGNPMPEIIWIRSDG----TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 85
Query: 68  YWCLARNSVGTAVSRNATLQVAVVIFF 94
           Y CLARN  G+ +SR+  ++  V  ++
Sbjct: 86  YACLARNQFGSIISRDVHVRAVVAQYY 112

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 6   NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
           ++ VTL C A+G PEPT+ W KDGE +E  + D + +      GS   ++ V    + D 
Sbjct: 28  SQSVTLACDADGFPEPTMTWTKDGEPIE--QEDNEEKYSFNYDGSELIIKKVD---KSDE 82
Query: 66  GVYWCLARNSVGTAVSRNATLQVAV 90
             Y C+A N  G    ++AT+ + V
Sbjct: 83  AEYICIAENKAG---EQDATIHLKV 104

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 11  LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGV 67
           + CKA G P P I W + DG    T+  D    R I   G L F   R    ++E    V
Sbjct: 24  IECKASGNPMPEIIWIRSDG----TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 68  YWCLARNSVGTAVSRNATLQVAVVIFF 94
           Y CLARN  G+ +SR+  ++  V  ++
Sbjct: 80  YACLARNQFGSIISRDVHVRAVVAQYY 106

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 11  LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGV 67
           + CKA G P P I W + DG    T+  D    R I   G L F   R    ++E    V
Sbjct: 59  IECKASGNPMPEIIWIRSDG----TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 114
Query: 68  YWCLARNSVGTAVSRNATLQVAVVIFF 94
           Y CLARN  G+ +SR+  ++  V  ++
Sbjct: 115 YACLARNQFGSIISRDVHVRAVVAQYY 141

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 5   KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
           + E +T +C+A G PEP I W+++G+L+E      ++++ IL  GS   L  V      D
Sbjct: 208 RGEEMTFSCRASGSPEPAISWFRNGKLIE------ENEKYIL-KGSNTEL-TVRNIINSD 259
Query: 65  GGVYWCLARNSVGTAVSRNATLQVAV 90
           GG Y C A N  G    + A LQV V
Sbjct: 260 GGPYVCRATNKAGED-EKQAFLQVFV 284

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 11  LNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFF--LRVVHGKKEQDGGV 67
           + CKA G P P I W + DG    T+  D    R I   G L F   R    ++E    V
Sbjct: 24  IECKASGNPMPEIIWIRSDG----TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV 79
Query: 68  YWCLARNSVGTAVSRNATLQVAVVIFFIS 96
           Y CLARN  G+ +SR+  ++  V+  + S
Sbjct: 80  YACLARNQFGSIISRDVHVRAVVIQSYES 108

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
            A  EP+TL CK +G PE  I WYK  E  +   + A   +      SL   +V H    
Sbjct: 17  AAIGEPITLQCKVDGTPEIRIAWYK--EHTKLRSAPAYKMQFKNNVASLVINKVDHS--- 71
Query: 63  QDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFR 99
            D G Y C A NSVG AV+ +A L +       SF R
Sbjct: 72  -DVGEYTCKAENSVG-AVASSAVLVIKERKLPPSFAR 106

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 4   AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
           +  E VTL C+A   P  T  W  +G    T        R  L  G L     V   K +
Sbjct: 20  SAEEKVTLTCRARANPPATYRWKMNG----TELKMGPDSRYRLVAGDLVISNPV---KAK 72
Query: 64  DGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
           D G Y C+A N+ GT VSR A+L+   +  F
Sbjct: 73  DAGSYQCVATNARGTVVSREASLRFGFLQEF 103

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 7   EPVTLNCKAEGKPEPTIEWYKDG-ELVETSK----SDAKSQRVILPTGSLFFLRVVHGKK 61
           E   L+C+  G+P P I+WY+ G EL+++ K    SD ++  + + T           ++
Sbjct: 23  EAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMT-----------EE 71
Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
           ++D GVY C+A N VG   + +  L  A   F   +
Sbjct: 72  QEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY 107

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           M V +   V L  +  G P P +++Y+DG  +++S     SQ      G L+ L +    
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE-----GDLYSLLIAEAY 167
Query: 61  KEQDGGVYWCLARNSVGTAVS 81
            E D G Y   A NSVG A S
Sbjct: 168 PE-DSGTYSVNATNSVGRATS 187

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           M V +   V L  +  G P P +++Y+DG  +++S     SQ      G L+ L +    
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE-----GDLYSLLIAEAY 167
Query: 61  KEQDGGVYWCLARNSVGTAVS 81
            E D G Y   A NSVG A S
Sbjct: 168 PE-DSGTYSVNATNSVGRATS 187

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
           V +   V   C+A+G P P I W    + + ++KS+ +    + P G+L     V   + 
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGR--LTVFPDGTL----EVRYAQV 450
Query: 63  QDGGVYWCLARNSVG 77
           QD G Y C+A N+ G
Sbjct: 451 QDNGTYLCIAANAGG 465

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 8   PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
           PVT  C+  G P+P I W+KDG+ +         QR +  T SL            D G 
Sbjct: 24  PVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH----TTASTLDDDGN 79
Query: 68  YWCLARNSVGTAVSRNATLQVAVV 91
           Y  +A N  G  VS    L V  V
Sbjct: 80  YTIMAANPQG-RVSCTGRLMVQAV 102

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 8   PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
           PVT  C+  G P+P I W+KDG+ +         QR +  T SL            D G 
Sbjct: 25  PVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH----TTASTLDDDGN 80
Query: 68  YWCLARNSVGTAVSRNATLQVAVV 91
           Y  +A N  G  +S    L V  V
Sbjct: 81  YTIMAANPQG-RISCTGRLMVQAV 103

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 14 KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR 73
          KA G+P PT  W KDG+ +       +  +  L      F   +H     D G+Y C  +
Sbjct: 29 KATGEPRPTAIWTKDGKAI------TQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK 82
Query: 74 NSVGTAVSRNATLQVAVV 91
          NS G +VS +  L +  +
Sbjct: 83 NSAG-SVSSSCKLTIKAI 99

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Query: 7  EPVTLNCKAEGKPEPTIEWYKDGE-LVETSKSDAKSQRVILPTG--SLFFLRVVHGKKEQ 63
          E + ++C A G P P I W+KD E LVE S        ++L  G  +L   RV    +++
Sbjct: 26 ESIEVSCTASGNPPPQIMWFKDNETLVEDSG-------IVLKDGNRNLTIRRV----RKE 74
Query: 64 DGGVYWCLARNSVGTA 79
          D G+Y C A + +G A
Sbjct: 75 DEGLYTCQACSVLGCA 90

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 11  LNC-KAEGKPEPTIEWYKDGELVETSKSDAK----SQRVILPT-GSLFFLRVVHGKKEQD 64
           L C + +G P     W+KDG ++ T+    +    S  V+ PT G L F  +       D
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL----SASD 182
Query: 65  GGVYWCLARNSVGTAVSRNATLQVAV 90
            G Y C ARN  GT ++ NA    AV
Sbjct: 183 TGEYSCEARNGYGTPMTSNAVRMEAV 208

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Query: 7   EPVTLNCKAEGKPEPTIEWYKDGE-LVETSKSDAKSQRVILPTG--SLFFLRVVHGKKEQ 63
           E + ++C A G P P I W+KD E LVE S        ++L  G  +L   RV    +++
Sbjct: 682 ESIEVSCTASGNPPPQIMWFKDNETLVEDSG-------IVLKDGNRNLTIRRV----RKE 730
Query: 64  DGGVYWCLARNSVGTA 79
           D G+Y C A + +G A
Sbjct: 731 DEGLYTCQACSVLGCA 746

>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex Length = 195

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 2   VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            VA N P  L+C+A+G PEP  + W +D   + T+                   R +H  
Sbjct: 117 TVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ-------------RSLHVP 163
Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                  + C A N+ G   SR AT+ V
Sbjct: 164 GLNKTSSFSCEAHNAKGVTTSRTATITV 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-41
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	9e-38
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-22
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-37
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-33
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-24
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-32
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-20
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-17
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-15
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-30
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-30
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-19
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-30
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-20
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-17
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-15
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-29
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-24
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-28
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-19
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-18
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-28
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-21
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-16
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-28
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-22
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-18
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-27
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-23
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	7e-27
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	9e-25
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-26
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-25
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	8e-19
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-25
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-24
2ens_A	96	Advanced glycosylation END product-specific recept	2e-24
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-24
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-19
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-24
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-15
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-24
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-23
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-17
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-17
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-16
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-23
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-23
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-20
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-18
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-23
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-20
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-23
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-22
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	8e-20
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-22
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-17
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-22
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-22
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-16
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-21
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	6e-19
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-21
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-21
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-19
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-19
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-21
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	9e-18
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-21
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-21
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-19
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-21
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-21
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-19
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-20
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-20
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-20
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-17
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-20
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-17
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-20
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-17
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-14
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-20
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-19
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-15
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-15
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-20
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-20
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-20
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	8e-20
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-19
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-19
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-19
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-19
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-19
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-16
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-19
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-19
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-17
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-14
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-19
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	8e-19
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	9e-19
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-18
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-17
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-18
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-18
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-18
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-18
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-16
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-18
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-11
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	9e-18
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-17
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-17
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-12
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-17
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-17
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-11
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-17
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-17
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-17
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	9e-17
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-16
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	8e-16
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-16
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-11
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-16
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-16
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-16
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-15
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-15
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-14
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-13
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-15
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-15
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-15
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-15
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-15
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-11
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-15
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-14
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-15
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-14
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-14
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-14
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-14
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-14
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-13
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-14
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-14
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-13
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-13
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-14
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-14
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-11
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-14
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-12
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	9e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-14
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-09
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-13
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-10
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-13
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	6e-13
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-13
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-10
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-12
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-05
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-12
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-11
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-11
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-11
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	5e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-11
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	5e-11
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	6e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	8e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	9e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-10
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-10
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-10
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-10
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-10
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	6e-10
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	8e-10
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-09
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-09
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-09
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	8e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	7e-08
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-09
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	7e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	8e-08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	9e-08
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-07
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	3e-07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	5e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	9e-07
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	8e-06
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	2e-06
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	7e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	5e-06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	5e-06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	7e-06
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	9e-06
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	6e-05
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	1e-05
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	1e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	9e-05
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	2e-05
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	8e-05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-05
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-04
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	3e-05
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	3e-05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	4e-05
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	4e-05
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	5e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	5e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-04
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	1e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	1e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	2e-04
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	2e-04
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	2e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	4e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	5e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	6e-04
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	5e-04
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	8e-04
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	8e-04

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score =  132 bits (333), Expect = 2e-41
 Identities = 57/91 (62%), Positives = 72/91 (79%), Gaps = 1/91 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 19  LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78

Query: 61  -KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
               D GVY C+ARN +G AVS +A+L+VA 
Sbjct: 79  KSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  126 bits (317), Expect = 9e-38
 Identities = 60/91 (65%), Positives = 72/91 (79%), Gaps = 2/91 (2%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +VV KNEP TLNCK EGKPEPTIEW+KDGE V T+  + KS RV    G+LFF R + GK
Sbjct: 19  LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTN--EKKSHRVQFKDGALFFYRTMQGK 76

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           KEQDGG YWC+A+N VG AVSR+A+LQ+AV+
Sbjct: 77  KEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 84.9 bits (210), Expect = 8e-22
 Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 1   MVVAKNEPVTLNC-KAEGKPEPTIEWYKDGELVETSKS---DAKSQRVILPTGSLFFLRV 56
             VAK E   L C   +G PEPT+ W KDG  ++  K+    A S+  I+  G+L    V
Sbjct: 118 TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177

Query: 57  VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
               +  D G Y C+A+N VGT  S  A L V V
Sbjct: 178 ----EPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  125 bits (315), Expect = 2e-37
 Identities = 57/92 (61%), Positives = 74/92 (80%), Gaps = 1/92 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V+K EP TLNCKAEG+P PTIEWYK GE VET K D +S R++LP+GSLFFLR+VHG+
Sbjct: 19  LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78

Query: 61  -KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
               D GVY C+ARN +G AVS +A+L+VA++
Sbjct: 79  KSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 88.3 bits (219), Expect = 4e-23
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 1   MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           ++VA  EP  + C+   G PEPTI W KDG  ++        +R+ +  G L        
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK-----DERITIRGGKLMITYT--- 172

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
            ++ D G Y C+  N VG   S  A L V     F+
Sbjct: 173 -RKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  113 bits (284), Expect = 8e-33
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             V      +  C A G P P+I W K+G+ V  ++S      V+   G +  LR+   +
Sbjct: 16  QGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS---RYTVLEQPGGISILRIEPVR 72

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             +D   Y C+A N VG AVS +ATL +  
Sbjct: 73  AGRDDAPYECVAENGVGDAVSADATLTIYE 102

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 91.0 bits (226), Expect = 4e-24
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V+     V + CKA G P P I W K+   V+ S       R  L  G L         
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNP-----RYSLKDGFLQIENS---- 170

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           +E+D G Y C+A NS+GT  S+   L V V
Sbjct: 171 REEDQGKYECVAENSMGTEHSKATNLYVKV 200

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  115 bits (290), Expect = 4e-32
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 2/105 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            +V   + + + C+A+G P P+  W ++      +K       +   +G+L       G+
Sbjct: 27  HIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP--RVSMRRRSGTLVIDFRSGGR 84

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAY 105
            E+  G Y C ARN  GTA+S    LQV+    +       +   
Sbjct: 85  PEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQ 129

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 84.2 bits (208), Expect = 1e-20
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +++A  E   L C+A G P+PT++W  +GE ++++  +       +   ++ F       
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN---PNREVAGDTIIFRDT---- 374

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           +     VY C   N  G  ++ NA + V
Sbjct: 375 QISSRAVYQCNTSNEHGYLLA-NAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 75.3 bits (185), Expect = 2e-17
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            +V +   + L C A G P P I WYK G  + + K+     +      +L    V    
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-----KFENFNKALRITNV---- 282

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
            E+D G Y+CLA N +G+ +    +++V    +++
Sbjct: 283 SEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWL 316

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 68.7 bits (168), Expect = 6e-15
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 1   MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVH 58
           +VV +  P+TL C    G P P I W        T       +RV     G L+F  V  
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ-----DKRVSQGHNGDLYFSNV-- 178

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
              +     Y C AR      + +     + V+
Sbjct: 179 -MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVL 210

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  106 bits (267), Expect = 1e-30
 Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + V++ +PV LNC  EG  EP I+W KDG +V+               G L    V    
Sbjct: 12  LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV---- 67

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
           +  D G YWC   +   T +S+   L V  V FF 
Sbjct: 68  ERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFT 102

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 73.7 bits (181), Expect = 1e-17
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 16/89 (17%)

Query: 1   MVVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           + V  N P  L+C+A G PEP TI W++    +      A S  V+  TG          
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP---APSPSVLNVTGV--------- 155

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
                  ++ C A N  G A SR AT+ +
Sbjct: 156 ---TQSTMFSCEAHNLKGLASSRTATVHL 181

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  110 bits (276), Expect = 3e-30
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 6   NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
            E VTL C+A   P  T  W  +G  ++         R  L  G L     V     +D 
Sbjct: 22  EEKVTLTCRARANPPATYRWKMNGTELKMGPDS----RYRLVAGDLVISNPVK---AKDA 74

Query: 66  GVYWCLARNSVGTAVSRNATLQVAVV 91
           G Y C+A N+ GT VSR A+L+   +
Sbjct: 75  GSYQCVATNARGTVVSREASLRFGFL 100

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 81.1 bits (200), Expect = 2e-19
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                   +  +C A GKP P + W +DG+ + +        R+ +  G L F ++    
Sbjct: 304 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS------QNRIEVSGGELRFSKL---- 353

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             +D G+Y C+A N  GT V  +A L V
Sbjct: 354 VLEDSGMYQCVAENKHGT-VYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 69.5 bits (170), Expect = 3e-15
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 13/88 (14%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                 + VTL C A G P P I+W K             + + +     L    V    
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ--------TSKWLSSEPLLHIQNV---- 264

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             +D G Y C A N  G   +    + +
Sbjct: 265 DFEDEGTYECEAENIKGR-DTYQGRIII 291

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 67.6 bits (165), Expect = 1e-14
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 1   MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           + + +   V   C      P  +  W  +             + V   TG+L+  +    
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADG--RRFVSQTTGNLYIAKT--- 165

Query: 60  KKEQDGGVYWCLARNSVG----TAVSRNATLQVAV 90
            +  D G Y C A + +     +  S+ + L +A 
Sbjct: 166 -EASDLGNYSCFATSHIDFITKSVFSKFSQLSLAA 199

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  110 bits (276), Expect = 3e-30
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           + ++ + V L+C+ +G P+P I W  +G  V+         R  +  GSL          
Sbjct: 19  LDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMD----FRYSVVDGSLLINNPNK--- 71

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
            QD G Y C+A NS GT VSR A LQ A +
Sbjct: 72  TQDAGTYQCIATNSFGTIVSREAKLQFAYL 101

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 82.2 bits (203), Expect = 7e-20
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + VA  E V   CKA G+P+PT  W K+G+ + T        R+ +  G+L    V    
Sbjct: 305 IHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT------RDRIQIEQGTLNITIVN--- 355

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
              D G+Y C+A N  G   S +A L V
Sbjct: 356 -LSDAGMYQCVAENKHGVIFS-SAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 73.7 bits (181), Expect = 9e-17
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           +   K   V L C A G P PTI W + DG+ +          R     G L        
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA------RRHKSNGILEIPNF--- 265

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
            +++D G Y C+A NS G        L       ++
Sbjct: 266 -QQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWV 299

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 69.1 bits (169), Expect = 3e-15
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 11/93 (11%)

Query: 1   MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVH 58
           + V + + + L C       E +  W  +            ++R     TG+L+  +V  
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD-----NRRFVSQETGNLYIAKV-- 164

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
             ++ D G Y C+  N+V           + + 
Sbjct: 165 --EKSDVGNYTCVVTNTVTNHKVLGPPTPLILR 195

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  102 bits (257), Expect = 9e-29
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                    +  C+A G P P I W K G+ V       + + +    GS   LR+   +
Sbjct: 16  QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ----RFEVIEFDDGSGSVLRIQPLR 71

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             +D  +Y C+A N+VG   S +  L V  
Sbjct: 72  TPRDEAIYECVASNNVGEI-SVSTRLTVLR 100

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 92.2 bits (229), Expect = 1e-24
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
            VV +    T+ C A G P+P I W+KD   V+TS ++ + +++     G+L   +    
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQS--- 174

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +E D G Y C+A NS GT  S  A L V
Sbjct: 175 -EESDQGKYECVATNSAGTRYSAPANLYV 202

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  106 bits (265), Expect = 1e-28
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVH-- 58
             + +    + CKA G P P I W + DG  V     D    R I   G L F       
Sbjct: 15  DFSNSTGAEIECKASGNPMPEIIWIRSDGTAV----GDVPGLRQISSDGKLVFPPFRAED 70

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
            ++E    VY CLARN  G+ +SR+  ++  V  ++ +
Sbjct: 71  YRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEA 108

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 81.1 bits (200), Expect = 2e-19
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + +     ++L C A+G P P+  WYK  E     ++   + RV   +G+L         
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA---- 277

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
             +D G Y C+  NSVG   S    L V   +   
Sbjct: 278 VVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAK 311

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 78.4 bits (193), Expect = 2e-18
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 17/89 (19%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             V    P    C+  G P  T+ W KDG+ +  S+              L    V    
Sbjct: 317 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SVLRIESVK--- 361

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVA 89
            ++D G+Y C  RN   +A + +A L++ 
Sbjct: 362 -KEDKGMYQCFVRNDRESAEA-SAELKLG 388

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 66.9 bits (163), Expect = 3e-14
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 1   MVVAKNEPVTLNCKAE---GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV 57
             V +     + C            + W+ D E      ++   + ++LP+G L    V 
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREV- 171

Query: 58  HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
               E     Y C  ++ +      +AT    V+
Sbjct: 172 --GPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 203

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  106 bits (265), Expect = 1e-28
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 2   VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +  +N P  L C  EG  +     W KDG+     +    +  +    GSL FLR     
Sbjct: 17  LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH---NAALRKDEGSLVFLRP---- 69

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
           +  D G Y C A    G A SR  + +   +I   +
Sbjct: 70  QASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA 105

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           M+    +   + C     P     ++K+G+ V  +  D  ++        L F       
Sbjct: 222 MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT---- 277

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             +D GVY C   N VG     +  L V  
Sbjct: 278 LPEDEGVYTCEVDNGVGKPQKHSLKLTVVS 307

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 80.0 bits (197), Expect = 5e-19
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +VV + + VT+ CK  G P P + W  + + +          R  +    L    V    
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS-------GGRATVTDSGLVIKGV---- 367

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           K  D G Y C A N  G        +QV
Sbjct: 368 KNGDKGYYGCRATNEHGDKYF-ETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 73.0 bits (179), Expect = 2e-16
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 1   MVVAKNEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQR--VILPTGSLFFLRVV 57
               +  P  L+C      P+P I W K     + +       R     P G+L+F  V 
Sbjct: 110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT 169

Query: 58  HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
             +   D   Y C A+N+           ++  V
Sbjct: 170 -KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGV 202

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  104 bits (261), Expect = 5e-28
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 1   MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
            V  +   V LNC AE  +  P I+W KDG ++     D   ++  LP GSL    ++H 
Sbjct: 31  AVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDD---RKQQLPNGSLLIQNILHS 87

Query: 60  K-KEQDGGVYWCLAR-NSVGTAVSRNATLQVAVVIFFIS 96
           +  + D G+Y C A     G+ +SR A + VA  + F+S
Sbjct: 88  RHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLS 126

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 90.3 bits (224), Expect = 1e-22
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
                + V L C+  G P PTI W K+ + +     D  S+ V+LP+G+L   R+    +
Sbjct: 132 TAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD--SRVVVLPSGALQISRL----Q 185

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             D GVY C ARN   T     A +++  
Sbjct: 186 PGDSGVYRCSARNPASTRTGNEAEVRILS 214

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 81.4 bits (201), Expect = 1e-19
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +   ++  +   C   GKP PT+ W K+G++V  S         I+   +L  L VV   
Sbjct: 322 LYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS-----DYFQIVGGSNLRILGVV--- 373

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            + D G Y C+A N  G     +A L V
Sbjct: 374 -KSDEGFYQCVAENEAGN-AQSSAQLIV 399

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 76.8 bits (189), Expect = 8e-18
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++  + +   L C   G P P+  W +  E+++        +  +L   +L    V    
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLR----SKKYSLLGGSNLLISNV---- 282

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            + D G Y C+        +S +A L V V
Sbjct: 283 TDDDSGTYTCVVTYKNEN-ISASAELTVLV 311

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 99.4 bits (248), Expect = 1e-27
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          +     E  T  C  E  P+P I W ++  L++   +       I   G L  +  V   
Sbjct: 17 VDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR----YSIRENGQLLTILSV--- 69

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
          ++ D G+Y C A N VG AV     LQV +
Sbjct: 70 EDSDDGIYCCTANNGVGGAVESCGALQVKM 99

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 89.0 bits (221), Expect = 1e-23
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + + +     L C   G P+P++ W K    +  +     S+  +L +GSL    V    
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN-----SRIAVLESGSLRIHNV---- 160

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           +++D G Y C+A+NS+GTA S+   L+V V
Sbjct: 161 QKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 99.9 bits (249), Expect = 7e-27
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            +       +  C+A G P+P + W K G+ V +     + + +     +   LR+   +
Sbjct: 16  QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ----RFETIEFDESAGAVLRIQPLR 71

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             +D  VY C+A+NSVG   + +A L V  
Sbjct: 72  TPRDENVYECVAQNSVGEI-TVHAKLTVLR 100

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 94.5 bits (235), Expect = 9e-25
 Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            VV +    T+ C A G P+P I W+KD   V+ S S+ + +   L +G+L         
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK--QLRSGALQIESS---- 171

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           +E D G Y C+A NS G   S  A L V V
Sbjct: 172 EETDQGKYECVATNSAGVRYSSPANLYVRV 201

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 71.4 bits (175), Expect = 4e-16
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 13/88 (14%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             +     V + C A G P P ++W +  E +           + +    L    V    
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED------DMPVGRNVLELTDV---- 264

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             +D   Y C+A +S+G      A + V
Sbjct: 265 --KDSANYTCVAMSSLGVI-EAVAQITV 289

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  101 bits (253), Expect = 2e-26
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFF--LRVV 57
           +  + +    + CKA G P P I W + DG  V     D    R I   G L F   R  
Sbjct: 49  IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG----DVPGLRQISSDGKLVFPPFRAE 104

Query: 58  HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
             ++E    VY CLARN  G+ +SR+  ++  V  ++
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYY 141

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 82.3 bits (203), Expect = 1e-19
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             +   E + + C   G P  +I W +D   +  +      ++ + P G+L    V    
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPIN-----RKQKVFPNGTLIIENVE--- 587

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
           +  D   Y C+A+N  G +   +  +QV V+   I F
Sbjct: 588 RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPF 624

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 81.5 bits (201), Expect = 2e-19
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAK-SQRVILPTGSLFFLRVVHG 59
              A+     + CKA+G P+P + W K          D K S  + +  G+L    +   
Sbjct: 724 KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNI--- 780

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            ++ + G Y C A N +G+ +S    + V
Sbjct: 781 -QKTNEGYYLCEAINGIGSGLSAVIMISV 808

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 81.1 bits (200), Expect = 3e-19
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            +     V L C A G P P I W  DG+ +  +      Q V +    + +L +     
Sbjct: 440 TMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHA 499

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
             DGG+Y C+A++ VG A   +A L V  + +   
Sbjct: 500 N-DGGLYKCIAKSKVGVA-EHSAKLNVYGLPYIRQ 532

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 80.0 bits (197), Expect = 7e-19
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
              + +  + L C A+G P P   WYK  E     ++   + RV   +G+L         
Sbjct: 258 KTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA---- 313

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
             +D G Y C+  NSVG        L V   +   
Sbjct: 314 VVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAK 347

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 79.6 bits (196), Expect = 9e-19
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             V    P    C+  G P  T+ W KDG+ +  S+              L    V    
Sbjct: 353 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SVLRIESV---- 396

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVI 92
           K++D G+Y C  RN   +A + +A L++    
Sbjct: 397 KKEDKGMYQCFVRNDRESAEA-SAELKLGGRF 427

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 1   MVVAKNEPVTLNCKAE---GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV 57
             V +     + C            + W+ D E      ++   + ++LP+G L    V 
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREV- 206

Query: 58  HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
               E     Y C  ++ +      +AT    V+
Sbjct: 207 --GPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 238

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 67.7 bits (165), Expect = 2e-14
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
                 + +TL+C   G   P  I+W  DG+ +        + RV      L    V   
Sbjct: 629 GPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLG-ITTSRVGRRGSVLTIEAV--- 684

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
            +    G + C ARN  G        L V V   +I
Sbjct: 685 -EASHAGNFTCHARNLAGHQ-QFTTPLNVYVPPRWI 718

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 93.3 bits (232), Expect = 4e-26
 Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             VA +    L+C A G P PTI W KDG LV T      S+   L  G L         
Sbjct: 18  QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ----DSRIKQLENGVLQIRYA---- 69

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFR 99
           K  D G Y C+A    G A + +A ++V      +   R
Sbjct: 70  KLGDTGRYTCIASTPSGEA-TWSAYIEVQEFGVPVQPPR 107

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 94.6 bits (235), Expect = 2e-25
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             V   + V L C+A G P    +W+K  + +               T  L F  V    
Sbjct: 28  KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----------NTSELIFNAV---- 72

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
             +D G Y C   N+     S+ + L V  +
Sbjct: 73  HVKDAGFYVCRVNNNFTFEFSQWSQLDVCDI 103

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 77.2 bits (190), Expect = 8e-19
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 15/90 (16%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             +     + L C A G P P  +W+K+   +                       V    
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-----------KLYMVPYV---- 172

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             +  G YWC   N   +  S+   + +  
Sbjct: 173 DLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 90.9 bits (226), Expect = 3e-25
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + V + +   ++CK  G P P + W  DG+ V        + ++++    +  L +    
Sbjct: 19  LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD----SAHKMLVRENGVHSLIIEPVT 74

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
              D G+Y C+A N  G   S +  L VA 
Sbjct: 75  SR-DAGIYTCIATNRAGQN-SFSLELVVAA 102

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 88.9 bits (221), Expect = 1e-24
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          M + +     ++ K  G P P + WY +G  V++        ++I+    L  L     +
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD----DLHKMIVSEKGLHSLIFEVVR 70

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             D G Y C+A+N  G A +    L V
Sbjct: 71 AS-DAGAYACVAKNRAGEA-TFTVQLDV 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 88.2 bits (219), Expect = 2e-24
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            VA    VTL C+   +P P I W KDG  +            + P+  L    +    
Sbjct: 20 GAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-----------LPPSPVLILPEI---- 64

Query: 61 KEQDGGVYWCLARNSVGTA-VSRNATLQV 88
            QD G Y C+A +S      SR  ++ +
Sbjct: 65 GPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 89.9 bits (223), Expect = 6e-24
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
               + +   + CK+ G P P   W K    V    S++  +  I+   +   L +V+ +
Sbjct: 102 ENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ 161

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             +D G Y C A NS+G+A S +  L+V V
Sbjct: 162 ITEDPGEYECNATNSIGSA-SVSTVLRVRV 190

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 66.8 bits (163), Expect = 4e-15
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 1   MVVAKNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
           ++     PVTL C             W K+G  +  +       R           +   
Sbjct: 13  IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT-------RKNASNMEYRINKP-- 63

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFR 99
             + +D G Y C+  + V      NAT++V          R
Sbjct: 64  --RAEDSGEYHCVY-HFVSAP-KANATIEVKAAPDITGHKR 100

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 89.8 bits (223), Expect = 7e-24
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + V      TL CK  G P+P ++WY+ G+ +    +D    R+    G    L +    
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI---IADGLKYRIQEFKGGYHQLIIASVT 70

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           + D  VY   A N  G+  S  A+L+V V
Sbjct: 71 DD-DATVYQVRATNQGGSV-SGTASLEVEV 98

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 83.6 bits (207), Expect = 2e-21
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +   + E V++     GKP+P I W K  +L++ +         ++ T S   L   +G 
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-----GHYQVIVTRSFTSLVFPNGV 168

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           + +D G Y   A+N  G    +   L V
Sbjct: 169 ERKDAGFYVVCAKNRFGID-QKTVELDV 195

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 93.3 bits (232), Expect = 1e-23
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +  A  EP+TL CK +G PE  I WYK+   + ++ +     +      SL   +V    
Sbjct: 15  VEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAY--KMQFKNNVASLVINKV---- 68

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
              D G Y C A NSVG   S +A L +       SF
Sbjct: 69  DHSDVGEYTCKAENSVGAVAS-SAVLVIKERKLPPSF 104

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 78.7 bits (194), Expect = 2e-18
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
                 PV   C+  G     + WYKDGEL++   +       I    +L  L+      
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKDGELLKDDAN--LQTSFIHNVATLQILQT----D 165

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           +   G Y C A N +GTA S +A L ++ 
Sbjct: 166 QSHVGQYNCSASNPLGTA-SSSAKLTLSE 193

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 78.7 bits (194), Expect = 2e-18
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           +V ++E     CK  G PE  + WYKD   ++ S         +     L    +     
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF--RMSFVESVAVLEMYNL----S 355

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            +D G Y C A N+ G+A S + +L+V  
Sbjct: 356 VEDSGDYTCEAHNAAGSA-SSSTSLKVKE 383

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 76.4 bits (188), Expect = 1e-17
 Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + +A  E  T  C   G     I W KD   +           ++  T +L  L+V    
Sbjct: 207 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRP--GGNYKMTLVENTATLTVLKV---- 260

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSA 104
            + D G Y C A N  G   S +A L V     FI         
Sbjct: 261 TKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIV 303

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 76.0 bits (187), Expect = 2e-17
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
             K   V L C+ +G P   + W+KD   + +       +  I+    L  + +++    
Sbjct: 396 TLKGADVHLECELQGTPPFQVSWHKDKRELRSG-----KKYKIMSENFLTSIHILNVDSA 450

Query: 63  QDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
            D G Y C A N VG+  +   ++ +     F+ 
Sbjct: 451 -DIGEYQCKASNDVGSD-TCVGSITLKAPPRFVK 482

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +     E V L    EG    ++ W+KD   +    SD           +L F R     
Sbjct: 487 ISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRE-SDNIWISYSENIATLQFSRA---- 541

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           +  + G Y C  +N  GT     ATL V
Sbjct: 542 EPANAGKYTCQIKNEAGTQ-ECFATLSV 568

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 86.7 bits (215), Expect = 1e-23
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            +A +    L CKA G P P I W K+G            +  I   G+L    +    
Sbjct: 18 QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR----DPRATIQEQGTLQIKNL---- 69

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
          +  D G Y C+A +S G   S +A L V
Sbjct: 70 RISDTGTYTCVATSSSGE-TSWSAVLDV 96

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 90.3 bits (224), Expect = 3e-23
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + ++  E     C A G+PE    +   GE + ++      + V+   G    L + +  
Sbjct: 14  VELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST-----QRVVVQKEGVRSRLTIYNAN 68

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
            E D G+Y C A ++ G        L++   + F  
Sbjct: 69  IE-DAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE 103

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 81.4 bits (201), Expect = 6e-20
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
               + E   + C+    P P + W    E V T   +   +  +L   +L  L +    
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN---RFAMLANNNLQILNI---- 160

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
            + D G+Y C  R      +     + +  V   IS 
Sbjct: 161 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISM 197

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 76.4 bits (188), Expect = 4e-18
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
               + E +T +C+A G PEP I W+++G+L+E +    +   +      L    +    
Sbjct: 204 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN----EKYILKGSNTELTVRNI---- 255

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
              DGG Y C A N  G    + A LQV V
Sbjct: 256 INSDGGPYVCRATNKAGED-EKQAFLQVFV 284

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 88.2 bits (219), Expect = 3e-23
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +     E   L+C+  G+P P I+WY+ G+ +  S      +  +   G    L V+  +
Sbjct: 17  VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS-----RKYKMSSDGRTHTLTVMTEE 71

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFK 101
           +E D GVY C+A N VG     ++ L +     F   +  K
Sbjct: 72  QE-DEGVYTCIATNEVGEV-ETSSKLLLQATPQFHPGYPLK 110

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 80.9 bits (200), Expect = 2e-20
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
              A    + L+    G+P P + W+   +L++ S+       + I  T     L + + 
Sbjct: 113 YYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSE------NITIENTEHYTHLVMKNV 166

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           +++   G Y     N  GT  +    +++
Sbjct: 167 QRKTHAGKYKVQLSNVFGTVDA-ILDVEI 194

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 90.9 bits (225), Expect = 3e-23
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 14/96 (14%)

Query: 2   VVAKNEPVTLNCK-------AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFL 54
              + EPV L C        A   P   + W+K+         +    R+    G+L+ L
Sbjct: 29  FRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE--ETRMWAQDGALWLL 86

Query: 55  RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
                  ++D G Y C  RN+       +  L+V  
Sbjct: 87  PA----LQEDSGTYVCTTRNASYCD-KMSIELRVFE 117

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 61.6 bits (149), Expect = 2e-12
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 10  TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
            L+     K +  I+WYKD  L++      +    +  T  L    V      +D G Y 
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDN---EKFLSVRGTTHLLVHDV----ALEDAGYYR 196

Query: 70  CLARNSVGTA---VSRNATLQV 88
           C+   +       ++R+  L++
Sbjct: 197 CVLTFAHEGQQYNITRSIELRI 218

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 57.0 bits (137), Expect = 6e-11
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 20/105 (19%)

Query: 1   MVVAKNEPVTLNCKA---EGKPEPTIEWYKDGE-----------LVETSKSDAKSQRVIL 46
           +  +    +T+ CK     G P  T+ W+   +           + E  + +        
Sbjct: 236 ISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENY 295

Query: 47  PTGSLFFLRVVHGKKEQD-GGVYWCLARNSVGTAVSRNATLQVAV 90
               L F  V      +D    + C+  N++    +   T++   
Sbjct: 296 IEVPLIFDPV----TREDLHMDFKCVVHNTLSFQ-TLRTTVKEHH 335

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 86.9 bits (215), Expect = 1e-22
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 1   MVVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKS-------DAKSQRVILPTGSLF 52
           +  A+    TL C+ + +   P + W +DG+++E + S           Q   +    L 
Sbjct: 12  ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLR 71

Query: 53  FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
              +    +  D G Y CL      T VS+   + +  + +F+ 
Sbjct: 72  ITSL----QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE 111

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 79.6 bits (196), Expect = 8e-20
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
             VA N P  L+C+A+G PEP  + W +D   + T+           P  SL    +   
Sbjct: 116 RTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA-------PGHGPQRSLHVPGL--- 165

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQVA 89
                   + C A N+ G   SR AT+ V 
Sbjct: 166 ---NKTSSFSCEAHNAKGVTTSRTATITVL 192

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 86.2 bits (213), Expect = 3e-22
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK------SDAKSQRVILPTGSLFFL 54
           + + +N PV L+C   G   P +EW  D              + +   RV      + F 
Sbjct: 14  VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73

Query: 55  RVVHGKKEQDGGVYWCLARNSVGTAVSR-NATLQVAV 90
            V      +D G Y C+     G +       L V V
Sbjct: 74  SV----TREDTGTYTCMVSEEGGNSYGEVKVKLIVLV 106

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 71.9 bits (176), Expect = 7e-17
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 2   VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETS-----KSDAKSQRVILPTGSLFFLR 55
                    L C   +G P     W+KDG ++ T+          S  +   TG L F  
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177

Query: 56  VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           +       D G Y C ARN  GT    +  +++  V
Sbjct: 178 L----SASDTGEYSCEARNGYGTP-MTSNAVRMEAV 208

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 82.7 bits (205), Expect = 4e-22
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V+ +       KA G+P PT  W KDG+ +         +  +      FFL  +H  
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG-----GKYKLSEDKGGFFLE-IHKT 69

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
             D G+Y C  +NS G+  S +  L +  +
Sbjct: 70 DTSDSGLYTCTVKNSAGSVSS-SCKLTIKAI 99

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 85.4 bits (211), Expect = 6e-22
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQ-----RVILPTGSLFFL 54
           + V +NE + L C   G   P +EW    G        +++       RV   +  + F 
Sbjct: 11  VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFS 70

Query: 55  RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            V      +D G Y C+     G       ++ + V
Sbjct: 71  SV----TRKDNGEYTCMVSEEGGQNYGE-VSIHLTV 101

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 70.4 bits (172), Expect = 3e-16
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 3   VAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDA------KSQRVILPTGSLFFLR 55
           V       L C   +G P     W+KDG  + T+ +         S  +   +G L F  
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175

Query: 56  VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           V       D G Y+C A+N  GTA  R+    +  V
Sbjct: 176 V----TAFDSGEYYCQAQNGYGTA-MRSEAAHMDAV 206

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 84.1 bits (208), Expect = 1e-21
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKP-EPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
             ++  E     C+  G   +  I W+  +GE +  ++           + +L       
Sbjct: 12  GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA-- 69

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
                D G+Y C+     GT       +++   + F 
Sbjct: 70  --NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFK 104

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 76.8 bits (189), Expect = 6e-19
 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
               + E   + C       PTI W   G  V   K     + ++L    L    +    
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDV---RFIVLSNNYLQIRGI---- 162

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           K+ D G Y C  R            +QV V
Sbjct: 163 KKTDEGTYRCEGRILAR-GEINFKDIQVIV 191

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 81.2 bits (201), Expect = 1e-21
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 15/89 (16%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           +     + L C A G P P  +W+K+   +                       V     
Sbjct: 14 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----------TKKLYMVPYV----D 58

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           +  G YWC   N   +  S+   + +  
Sbjct: 59 LEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 85.9 bits (213), Expect = 1e-21
 Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + +A  E  T  C   G     I W KD   +           ++  T +L  L+V    
Sbjct: 15  VDLALGESGTFKCHVTGTAPIKITWAKDNREIRP--GGNYKMTLVENTATLTVLKV---- 68

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
            + D G Y C A N  G   S +A L V     FI
Sbjct: 69  TKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFI 102

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 79.8 bits (197), Expect = 2e-19
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           +V ++E     CK  G PE  + WYKD   ++ S         +     L    +     
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK--FRMSFVESVAVLEMYNL----S 163

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            +D G Y C A N+ G+  S + +L+V  
Sbjct: 164 VEDSGDYTCEAHNAAGS-ASSSTSLKVKE 191

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 79.0 bits (195), Expect = 5e-19
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +   K   V L C+ +G P   + W+KD   + +       +  I+    L  + +++  
Sbjct: 202 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSG-----KKYKIMSENFLTSIHILNVD 256

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
              D G Y C A N VG+  +   ++ +
Sbjct: 257 SA-DIGEYQCKASNDVGSY-TCVGSITL 282

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 80.4 bits (199), Expect = 3e-21
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V + + V ++ + +G+P+P + W ++ + V   +            G L  LR++  +
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRR----FAEEAEGGLCRLRILAAE 70

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
          +  D G Y C A N  G      A L+V
Sbjct: 71 RG-DAGFYTCKAVNEYGARQC-EARLEV 96

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 82.8 bits (205), Expect = 4e-21
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          +VV +    T      G P P + W++DG+++ TS               L    V    
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAV---- 70

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           + + G Y   A N  G A +  A L V
Sbjct: 71 TKANSGRYSLKATNGSGQA-TSTAELLV 97

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 77.5 bits (191), Expect = 4e-19
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           M V +   V L  +  G P P +++Y+DG  +++S         I   G L+ L +    
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSL-----DFQISQEGDLYSLLIAEAY 167

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            E D G Y   A NSVG A S  A L V
Sbjct: 168 PE-DSGTYSVNATNSVGRATST-AELLV 193

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 82.1 bits (203), Expect = 5e-21
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
              + E   + C+    P P + W    E V T      ++  +L   +L  L +    
Sbjct: 12 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISD---NRFAMLANNNLQILNI---- 64

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           + D G+Y C  R      +     + +  V
Sbjct: 65 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNV 95

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 77.9 bits (192), Expect = 3e-19
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
              + E +T +C+A G PEP I W+++G+L+E +    +   +      L    +     
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN----EKYILKGSNTELTVRNI----I 160

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             DGG Y C A N  G    + A LQV V
Sbjct: 161 NSDGGPYVCRATNKAGED-EKQAFLQVFV 188

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 78.9 bits (195), Expect = 1e-20
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V + +   L C   G P P I W  +G+ ++ ++S             L     +   
Sbjct: 21 CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS-----TCEAGVAELHIQDAL--- 72

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +D G Y CLA N++G     +A + V
Sbjct: 73 -PEDHGTYTCLAENALGQVSC-SAWVTV 98

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 78.9 bits (195), Expect = 1e-20
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           M V + E    +C  +G+P PT+ W + G+++ TS     +        +     V    
Sbjct: 24  MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT--KYKSTFEISSV---- 77

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           +  D G Y  +  NS G   +   TL +
Sbjct: 78  QASDEGNYSVVVENSEGKQEA-EFTLTI 104

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 81.9 bits (202), Expect = 2e-20
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             V     V   C A G P PT+ W K+G+  +         +V     SL    V    
Sbjct: 29  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI-GGYKVRNQHWSLIMESV---- 83

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
              D G Y C+  N  G+ ++    L V
Sbjct: 84  VPSDKGNYTCVVENEYGS-INHTYHLDV 110

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 72.2 bits (177), Expect = 7e-17
 Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 14/97 (14%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV---------ILPTGSL 51
                   V   CK     +P I+W K  E   +         +               L
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187

Query: 52  FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
               V     E D G Y C   N +G A +++A L V
Sbjct: 188 ALFNV----TEADAGEYICKVSNYIGQA-NQSAWLTV 219

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 81.9 bits (202), Expect = 2e-20
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + V     V   C A G P P+I W K+G             ++     SL    V    
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE-HRIGGIKLRHQQWSLVMESV---- 79

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
              D G Y C+  N  G+ + +  TL V
Sbjct: 80  VPSDRGNYTCVVENKFGS-IRQTYTLDV 106

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 73.4 bits (180), Expect = 4e-17
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV----------ILPTGS 50
                   V  +CK     +P I+W K  E+  +      +  V          +     
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183

Query: 51  LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           L    V     E+DGG Y C A N +G A  +   L V
Sbjct: 184 LRLANV----SERDGGEYLCRATNFIGVA-EKAFWLSV 216

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 84.3 bits (208), Expect = 2e-20
 Identities = 10/94 (10%), Positives = 25/94 (26%), Gaps = 8/94 (8%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            V  +  +TL    +     +  W      +                 S+  L++     
Sbjct: 59  EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH---FDLQNRGVVSMVILKM----T 111

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
           E   G Y    ++      +   T+ +   + + 
Sbjct: 112 ETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYT 144

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 74.7 bits (183), Expect = 4e-17
 Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 10/93 (10%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
                    L C +E  PEP +EW       E+ K +      ++               
Sbjct: 150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE---SPAVVKKEEKVL-------H 199

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
           E  G    C ARN +G   +R  T+ +      
Sbjct: 200 ELFGTDIRCCARNELGRECTRLFTIDLNQTPQT 232

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 67.4 bits (164), Expect = 1e-14
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 13/100 (13%)

Query: 1   MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQ----RVILPTGSLFFLR 55
           + +   EP+ + CKA        + W  + + +E       S     R ++     F   
Sbjct: 237 LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSS 296

Query: 56  VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
           V       D G Y C +      +    A + +    F  
Sbjct: 297 V----ARNDTGYYTCSSSKHPSQS----ALVTIVEKGFIN 328

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 11/86 (12%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
           + + E    + + +  P+    W    +           Q+ +    S+          +
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC------EQKGLDNGYSISKFCN----HK 387

Query: 63  QDGGVYWCLARNSVGTAVSRNATLQV 88
              G Y   A N      ++  TL +
Sbjct: 388 HQPGEYIFHAENDDAQF-TKMFTLNI 412

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 84.2 bits (208), Expect = 2e-20
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 9/89 (10%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            V   + V   C+ E +   T  W+ + + +  S       ++     +L    V     
Sbjct: 122 PVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPR----LQLSNGNRTLTLFNV----T 172

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             D   Y C  +N V    S +  L V  
Sbjct: 173 RNDTASYKCETQNPVSARRSDSVILNVLY 201

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 79.6 bits (196), Expect = 9e-19
 Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 18/90 (20%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
                E + L+C A   P     W+ +G                  T  LF   +     
Sbjct: 214 SYRSGENLNLSCHAASNPPAQYSWFVNG-------------TFQQSTQELFIPNI----T 256

Query: 62  EQDGGVYWCLARNSVGTA-VSRNATLQVAV 90
             + G Y C A NS      +   T+ V  
Sbjct: 257 VNNSGSYTCQAHNSDTGLNRTTVTTITVYA 286

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 74.6 bits (183), Expect = 5e-17
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 18/98 (18%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
                  ++L+C A   P     W  DG              +   T  LF   +     
Sbjct: 392 YYRPGVNLSLSCHAASNPPAQYSWLIDG-------------NIQQHTQELFISNI----T 434

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFR 99
           E++ G+Y C A NS     SR     + V         
Sbjct: 435 EKNSGLYTCQANNSASG-HSRTTVKTITVSAELPKPSI 471

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 74.2 bits (182), Expect = 7e-17
 Identities = 17/103 (16%), Positives = 26/103 (25%), Gaps = 18/103 (17%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELV--------------ETSKSDAKSQRVILPT 48
           VA+ + V L      +      WYK   +                T       + +I P 
Sbjct: 11  VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70

Query: 49  GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
            SL    +     + D G Y      S           +V   
Sbjct: 71  ASLLIQNI----IQNDTGFYTLHVIKSDLVNEEATGQFRVYPE 109

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 74.2 bits (182), Expect = 8e-17
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            V   + V   C+ E +   T  W+ +G+ +  S       ++     +L    V     
Sbjct: 478 PVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPR----LQLSNGNRTLTLFNV----T 528

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             D   Y C  +NSV    S   TL V  
Sbjct: 529 RNDARAYVCGIQNSVSANRSDPVTLDVLY 557

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 71.1 bits (174), Expect = 1e-15
 Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 18/90 (20%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                   + L+C +   P P   W  +G                  T  LF  ++    
Sbjct: 569 SSYLSGANLNLSCHSASNPSPQYSWRING-------------IPQQHTQVLFIAKI---- 611

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
              + G Y C   N      + +    + V
Sbjct: 612 TPNNNGTYACFVSNLATGR-NNSIVKSITV 640

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 68.4 bits (167), Expect = 7e-15
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             V   + V L C+ E +   T  W+ + + +  S       ++     +L  L V    
Sbjct: 299 NPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPR----LQLSNDNRTLTLLSV---- 349

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
              D G Y C  +N +    S    L V  
Sbjct: 350 TRNDVGPYECGIQNELSVDHSDPVILNVLY 379

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 82.2 bits (203), Expect = 3e-20
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                 + VTL C A+G PEPT+ W KDGE +E  + D +       +  L    V    
Sbjct: 206 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNV---- 261

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            + D   Y C+A N  G     +  L+V  
Sbjct: 262 DKNDEAEYVCIAENKAGEQ-DASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 81.8 bits (202), Expect = 4e-20
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
               + E   + C       PTI W   G  V   K     + ++L    L    +    
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGI---- 162

Query: 61  KEQDGGVYWCLARNSVGTAV-SRNATLQVAV 90
           K+ D G Y C  R      +  ++  + V V
Sbjct: 163 KKTDEGTYRCEGRILARGEINFKDIQVIVNV 193

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 81.5 bits (201), Expect = 6e-20
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKP-EPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
             ++  E     C+  G   +  I W+  +GE +  ++           + +L       
Sbjct: 12  GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA-- 69

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
                D G+Y C+     GT       +++   + F +
Sbjct: 70  --NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN 105

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 76.7 bits (189), Expect = 8e-20
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V     V   C A G P PT+ W K+G+  +         +V     SL    VV   
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-HRIGGYKVRNQHWSLIMESVV--- 73

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             D G Y C+  N  G+ ++    L V
Sbjct: 74 -PSDKGNYTCVVENEYGS-INHTYHLDV 99

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 76.6 bits (189), Expect = 1e-19
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             + +  PVT  C+  G P+P I W+KDG+ +         QR +  T SL         
Sbjct: 18  YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAST--- 74

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
              D G Y  +A N  G        L V  V
Sbjct: 75  -LDDDGNYTIMAANPQGRISC-TGRLMVQAV 103

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 76.2 bits (188), Expect = 2e-19
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 10/90 (11%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG--SLFFLRVVH 58
            V +        +  GKP+P  EWYK+G  +E      +            L    V  
Sbjct: 15 QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE---RSDRIYWYWPEDNVCELVIRDV-- 69

Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              +D       A N  G   S  A L V
Sbjct: 70 --TGEDSASIMVKAINIAGETSSH-AFLLV 96

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 76.2 bits (188), Expect = 2e-19
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG--SLFFLRVVH 58
             +  E + ++C A G P P I W+KD E +           ++L  G  +L   RV  
Sbjct: 20 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS------GIVLKDGNRNLTIRRV-- 71

Query: 59 GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +++D G+Y C A + +G A    A   +
Sbjct: 72 --RKEDEGLYTCQACSVLGCAKV-EAFFII 98

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 75.9 bits (187), Expect = 2e-19
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             V + + V L C+    P P + W ++ E+V+ +       +      +L    V    
Sbjct: 25  KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV---- 80

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            ++D G Y   A N  G     N  L V  
Sbjct: 81  NKKDAGWYTVSAVNEAGVTTC-NTRLDVTA 109

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 80.0 bits (197), Expect = 3e-19
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + V     V   C A G P P+I W K+G             ++     SL    VV   
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI-GGIKLRHQQWSLVMESVV--- 188

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
              D G Y C+  N  G+ + +  TL V
Sbjct: 189 -PSDRGNYTCVVENKFGS-IRQTYTLDV 214

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 80.0 bits (197), Expect = 3e-19
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 1  MVVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
          +V    + V L+C    G P     W KDG  +  S+      RV++    L  L   H 
Sbjct: 18 LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE------RVLVGPQRLQVLNASH- 70

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVA 89
             +D G Y C  R +       +  +  A
Sbjct: 71 ---EDSGAYSCRQRLTQRVLCHFSVRVTDA 97

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 71.2 bits (174), Expect = 5e-16
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELV-ETSKSDAKSQRVILPTGSLFFLRVVHG 59
                   V  +CK     +P I+W K  E+       D      +L T           
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291

Query: 60  K------KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                    +D G Y CLA NS+G +   +A L V
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFS-HHSAWLVV 325

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 80.9 bits (199), Expect = 3e-19
 Identities = 11/94 (11%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            V  +  +TL    +     +  W      +          R +    S+  L++     
Sbjct: 59  EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV---VSMVILKM----T 111

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
           E   G Y    ++      +   T+ +   + + 
Sbjct: 112 ETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYT 144

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 76.3 bits (187), Expect = 2e-17
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
                    L C +E  PEP +EW       E+ K +        P       +V+H   
Sbjct: 150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE-------SPAVVKKEEKVLH--- 199

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           E  G    C ARN +G   +R  T+ +  
Sbjct: 200 ELFGTDIRCCARNELGRECTRLFTIDLNQ 228

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 70.9 bits (173), Expect = 9e-16
 Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 11/90 (12%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             + + E    + + +  P+    W    +           Q+ +    S+         
Sbjct: 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC------EQKGLDNGYSISKFCN---- 385

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            +   G Y   A N      ++  TL +  
Sbjct: 386 HKHQPGEYIFHAENDDAQF-TKMFTLNIRR 414

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-----PTGSLFFLRV 56
           V+A+      +C ++G P P+  W K  +       +               G       
Sbjct: 418 VLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSST 477

Query: 57  VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
           ++  +   G +  C A NS+GT+      L       FI
Sbjct: 478 LNMSEAIKGFLVKCCAYNSLGTS-CETILLNSPGPFPFI 515

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 65.5 bits (159), Expect = 7e-14
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 13/98 (13%)

Query: 2   VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSK----SDAKSQRVILPTGSLFFLRV 56
            +   EP+ + CKA        + W  + + +E       S   + R ++     F   V
Sbjct: 238 FLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297

Query: 57  VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
                  D G Y C +          +A + +    F 
Sbjct: 298 ----ARNDTGYYTCSSSKHPSQ----SALVTIVEKGFI 327

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 75.1 bits (185), Expect = 4e-19
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +V   + + L C+       +I W +DG  +        S R  +    +         
Sbjct: 13 FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAE------SNRTRITGEEVEVQDS---- 61

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             D G+Y C+  +  G+  +   ++ V
Sbjct: 62 VPADSGLYACVTSSPSGSD-TTYFSVNV 88

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 74.1 bits (182), Expect = 8e-19
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          ++V   + + L C+       +I W +DG  +        S R  +    +         
Sbjct: 19 LLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVE------SNRTRITGEEVEVRDS---- 67

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             D G+Y C+  +  G+  +   ++ V
Sbjct: 68 IPADSGLYACVTSSPSGSD-TTYFSVNV 94

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 74.7 bits (183), Expect = 9e-19
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 1   MVVAKNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQ------RVILPTGSLF 52
                   V+  C A    +   T  W  D E ++ ++ +  +        ++  T  L 
Sbjct: 20  QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILR 79

Query: 53  FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              V    +    G Y C+  N  G++ S  A L +
Sbjct: 80  LRNV----EFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 78.6 bits (193), Expect = 1e-18
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 2  VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          V + NE     C         TI WYKD      S     + R+      L+F+      
Sbjct: 16 VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQ--ASRIHQHKEKLWFVPA---- 69

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
          K +D G Y+C+ RNS    +    + +   
Sbjct: 70 KVEDSGHYYCVVRNSSYC-LRIKISAKFVE 98

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 75.1 bits (184), Expect = 2e-17
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 8/97 (8%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS-------LFF 53
           M V     + L C   G+      W  +G +++            +   +       +  
Sbjct: 219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 278

Query: 54  LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           L +   +       + C A+N+ G   +    L   V
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIYPV 314

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 16/97 (16%)

Query: 2   VVAKNEPVTLNC------KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR 55
            +       L C      K E    P ++WYKD + +        +         L  + 
Sbjct: 114 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-----NIHFSGVKDRLIVMN 168

Query: 56  VVHGKKEQDGGVYWCLARNSVG-TAVSRNATLQVAVV 91
           V     E+  G Y C A  +           ++   +
Sbjct: 169 V----AEKHRGNYTCHASYTYLGKQYPITRVIEFITL 201

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 79.0 bits (194), Expect = 1e-18
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
              +  E + ++C A G P P I W+KD E +           +     +L   RV    
Sbjct: 676 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED----SGIVLKDGNRNLTIRRV---- 727

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           +++D G+Y C A + +G A    A   +
Sbjct: 728 RKEDEGLYTCQACSVLGCA-KVEAFFII 754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 77.5 bits (190), Expect = 5e-18
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +     E V +  K  G P P I+WYK+G  +E++         I     L  + V    
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN-------HTIKAGHVLTIMEV---- 388

Query: 61  KEQDGGVYWCLARNSVGTAV-SRNATLQVAV 90
            E+D G Y  +  N +     S   +L V V
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYV 419

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 74.4 bits (182), Expect = 6e-17
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR----V 56
           + ++  E + LNC A  +    I++  +    +       ++ +   +GS          
Sbjct: 234 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 293

Query: 57  VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
           + G    D G+Y C A + + T    +  ++V    F    
Sbjct: 294 IDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVAFG 333

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 61.3 bits (148), Expect = 2e-12
 Identities = 19/122 (15%), Positives = 27/122 (22%), Gaps = 29/122 (23%)

Query: 2   VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAK-------------------- 40
                   TL C     P P  I WY   E    ++                        
Sbjct: 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG 493

Query: 41  -------SQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
                    +  L  G    +  +  +      +Y C A N VG    R  +  V     
Sbjct: 494 GNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR-GERVISFHVTRGPE 552

Query: 94  FI 95
             
Sbjct: 553 IT 554

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 60.5 bits (146), Expect = 5e-12
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 8/97 (8%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + +  N  + + C   G+ +    W  +      S S+ + +      G       +   
Sbjct: 41  LTIKANTTLQITC--RGQRDLDWLWPNNQ-----SGSEQRVEVTECSDGLFCKTLTIPKV 93

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
              D G Y C  R +   +V     +Q     F  S 
Sbjct: 94  IGNDTGAYKCFYRETDLASVIY-VYVQDYRSPFIASV 129

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 60.5 bits (146), Expect = 5e-12
 Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 15/115 (13%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK-- 60
             + E V+L C A+      + WYK G              V     +L+ L        
Sbjct: 561 PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNS 620

Query: 61  ------------KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
                         QD G Y CLA++            Q+ V+          L 
Sbjct: 621 TNDILIMELKNASLQDQGDYVCLAQDRKTKKRHC-VVRQLTVLERVAPTITGNLE 674

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 12/92 (13%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTI--EWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
           +   KN+ V + C              Y +   V         +              + 
Sbjct: 138 ITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN-----RISWDSKKGF----TIP 188

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
                  G+ +C A+ +  +  S    + V V
Sbjct: 189 SYMISYAGMVFCEAKINDESYQS-IMYIVVVV 219

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 73.5 bits (181), Expect = 2e-18
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
            V   E V L  K  G    T  W K  + ++ S+       + +  + +   L ++  
Sbjct: 17 QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE------HMKVENSENGSKLTILAA 70

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
          ++E   G Y  L  N +G+       L V
Sbjct: 71 RQE-HCGCYTLLVENKLGSR-QAQVNLTV 97

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 72.7 bits (179), Expect = 4e-18
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V   +        + KP   ++WY +G  ++ S     S+     T  +  L ++   
Sbjct: 18 HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES-----SKIHYTNTSGVLTLEILDCH 72

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           + D G Y  +  N  G A    ATL V
Sbjct: 73 TD-DSGTYRAVCTNYKGEASDY-ATLDV 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 72.5 bits (178), Expect = 4e-18
 Identities = 23/91 (25%), Positives = 28/91 (30%), Gaps = 13/91 (14%)

Query: 1  MVVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
            V     VT  C A+   P  T+ W +       S       R +   G L    V   
Sbjct: 20 QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-------RAMDFNGILTIRNV--- 69

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           +  D G Y C   N         ATL V V
Sbjct: 70 -QPSDAGTYVCTGSNMFAMD-QGTATLHVQV 98

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 74.5 bits (183), Expect = 6e-18
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +     + VTL C A G P P I W K  E + ++        +      L    +    
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA------EISTSGAVLKIFNI---- 172

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           + +D G+Y C A N  G    + A + V
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQ-ARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 69.5 bits (170), Expect = 5e-16
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 2   VVAKNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
            V + + + L C          +  W  +   V  +    K + V    G+L+   V   
Sbjct: 19  RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD--KRRFVSQTNGNLYIANV--- 73

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
            +  D G Y C   +   T    +  + +  +
Sbjct: 74  -EASDKGNYSCFVSSPSITKSVFSKFIPLIPI 104

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 74.3 bits (182), Expect = 7e-18
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQR-VILPTGSLFFLRVVH 58
             + + E   L CK+E  P  T   WYK  +  + +  +    R  +  +     L + +
Sbjct: 93  EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN 152

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              E D G Y C   +S G+      TL+V
Sbjct: 153 LNMEADPGQYRCNGTSSKGSD-QAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 56.6 bits (136), Expect = 3e-11
 Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 19/91 (20%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIE--WYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
          V      + L C             W K G +++            LP     F      
Sbjct: 9  VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA---------LPGQKTEFKVD--- 56

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            +   G Y C+            A +Q+  
Sbjct: 57 -SDDQWGEYSCVFLPEPMG----TANIQLHG 82

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 71.6 bits (176), Expect = 7e-18
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
          + +       L     G P+PT  W         +        + +    S   +     
Sbjct: 12 IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP------ELLVDAKSSTTSIFFPSA 65

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
          K+  D G Y    +N +G        + V
Sbjct: 66 KRA-DSGNYKLKVKNELGED-EAIFEVIV 92

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 74.5 bits (183), Expect = 9e-18
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +   +   V + C+    P  TI W++DG+L+ +S               L         
Sbjct: 28  VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPD---- 83

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
            E D G Y C A N +G   S    L  A  
Sbjct: 84  SENDFGNYNCTAVNRIGQE-SLEFILVQADT 113

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 73.0 bits (179), Expect = 1e-17
 Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG--SLFFLRVVH 58
           M V +      +CK EG P+P + W+KD   V   K     Q      G  SL    V  
Sbjct: 51  MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV---KESRHFQIDYDEEGNCSLTISEVC- 106

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
                D   Y C A NS+G A    A L V
Sbjct: 107 ---GDDDAKYTCKAVNSLGEATCT-AELLV 132

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 71.7 bits (176), Expect = 1e-17
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            +    E + L    +GKP P + W K G  ++TS+   ++        ++FF+R     
Sbjct: 34  YIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTS----DFDTVFFVRQA--- 86

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
              D G Y    +          AT+++ VV
Sbjct: 87  ARSDSGEYELSVQIENMKD---TATIRIRVV 114

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 73.8 bits (181), Expect = 1e-17
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + + + + + L C   G P P + W K+ + +  +        +    G   +  +    
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT----DHCNLKFEAGRTAYFTINGVS 182

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
              D G Y  + +N  G+  + + T+ V +
Sbjct: 183 TA-DSGKYGLVVKNKYGSE-TSDFTVSVFI 210

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 58.7 bits (142), Expect = 7e-12
 Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 17/100 (17%)

Query: 2  VVAKNEPVTLNCKAEG----------KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSL 51
          +      + +   AEG            +  + W  +G  +  S      +     TG  
Sbjct: 4  IALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-----DRVKTGVTGEQ 58

Query: 52 FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           +L++       D G Y     +       +   L     
Sbjct: 59 IWLQINEPTPN-DKGKYVMELFDGKTGH-QKTVDLSGQAY 96

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 74.6 bits (183), Expect = 3e-17
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 3  VAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          V     V L CK    K E  I WYKD   +         ++     G    L +    K
Sbjct: 18 VTGECNVLLKCKVANIKKETHIVWYKDEREISVD------EKHDFKDGI-CTLLITEFSK 70

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
          + D G+Y  + ++  G   SR   L     
Sbjct: 71 K-DAGIYEVILKDDRGKDKSR-LKLVDEAF 98

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 73.4 bits (180), Expect = 8e-17
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + + + + + L C   G P P + W K+ + + +         +    G   +  +    
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD----DHCNLKFEAGRTAYFTINGVS 287

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
              D G Y  + +N  G+  + + T+ V +
Sbjct: 288 TA-DSGKYGLVVKNKYGSE-TSDFTVSVFI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 17/99 (17%)

Query: 2   VVAKNEPVTLNCKAEGK----------PEPTIEWYKDGELVETSKSDAKSQRVILPTGSL 51
           +      + +   AEG            +  + W  +G  +  S      +     TG  
Sbjct: 109 IALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-----DRVKTGVTGEQ 163

Query: 52  FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            +L++       D G Y     +       +   L    
Sbjct: 164 IWLQINEPTPN-DKGKYVMELFDGKTGH-QKTVDLSGQA 200

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 74.4 bits (183), Expect = 3e-17
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +   + E V++     GKP+P I W K  +L++ +         ++ T S   L   +G 
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-----GHYQVIVTRSFTSLVFPNGV 168

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           + +D G Y   A+N  G    +   L V
Sbjct: 169 ERKDAGFYVVCAKNRFGID-QKTVELDV 195

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 73.6 bits (181), Expect = 5e-17
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + V      TL CK  G P+P ++WY+ G+ +       + Q        L    V    
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV---- 69

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           + D  VY   A N  G+     A+L+V V
Sbjct: 70 TDDDATVYQVRATNQGGSVSGT-ASLEVEV 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 69.8 bits (171), Expect = 6e-17
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 3  VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETS---KSDAKSQRVILPTGSLFFLRVVHG 59
             +    +    +G P+P ++W+ +G ++  S    +           G L      H 
Sbjct: 13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH- 71

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              + G Y  +A+N  G    +  +   
Sbjct: 72 ---MNNGDYTLIAKNEYGKD-EKQISAHF 96

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 69.5 bits (170), Expect = 9e-17
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 7   EPVTLNCKAEGKPEPTIEWYKDGELVETSK--SDAKSQRVILPTGSLFFLRVVHGKKEQD 64
               +     G P PT+ W  +G+ +  SK       Q   +  G L F +  H     +
Sbjct: 21  LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH----YN 76

Query: 65  GGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
            G Y  +A+N +GTA ++          F + 
Sbjct: 77  NGNYTLIAKNPLGTA-NQTINGHFLKEPFPVD 107

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 73.7 bits (181), Expect = 1e-16
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-----LPTGSLFFLR 55
              +N  VTL C AEG+P P I W +  +    ++ D      I       + SL    
Sbjct: 10 ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKD 69

Query: 56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
          V    K  D G Y C A + +G    ++  L +
Sbjct: 70 V----KLSDSGRYDCEAASRIGGH-QKSMYLDI 97

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 71.0 bits (174), Expect = 8e-16
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
               +  P+ ++C  +  P  +I W +D  ++    +             L     +   
Sbjct: 110 YYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL----EIAPT 165

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVA 89
            + D G Y C A N +GT   +   L +A
Sbjct: 166 SDNDFGRYNCTATNHIGT-RFQEYILALA 193

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 70.8 bits (173), Expect = 2e-16
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEW-YKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
                   +T+ C     P P ++W   +G     + ++          GSL  + V   
Sbjct: 114 SQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM--KEKDGSL-SVAVDLS 170

Query: 60  KKEQDGGVYWCLARNSVGTA 79
             +       C+ +N    A
Sbjct: 171 LPKPWHLPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 51.2 bits (122), Expect = 4e-09
 Identities = 20/107 (18%), Positives = 27/107 (25%), Gaps = 23/107 (21%)

Query: 7   EPVTLNC---KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILP---------------T 48
           E VTL     +    PE  + W+K G   E          VI                 T
Sbjct: 7   ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66

Query: 49  GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
             L              G Y C  +      V++   L V   +   
Sbjct: 67  FFLVVTAA----NISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLS 108

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + V +   V   C+A+G P P I W    + + ++KS+ +    + P G+L         
Sbjct: 395 VFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT--VFPDGTLEVRYA---- 448

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           + QD G Y C+A N+ G   S  A L V
Sbjct: 449 QVQDNGTYLCIAANAGGND-SMPAHLHV 475

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 68.4 bits (167), Expect = 2e-16
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 2   VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVE-TSKSDAKSQRVILPTGSLFFLRVVHG 59
                E   + C     P P  I W     ++E  +      + +    G +  L + + 
Sbjct: 24  HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI 83

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +     +Y C A NS G+  +    L+ 
Sbjct: 84  VRADFQTIYNCTAWNSFGSD-TEIIRLKE 111

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 72.4 bits (177), Expect = 3e-16
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSD---AKSQRVILPTGSLFFLRV 56
           + V   E V L  + E  P+P   +W            D   ++++  I     L   R+
Sbjct: 323 VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL 382

Query: 57  VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
               K  +GG Y  L  NS   A +    + V  
Sbjct: 383 ----KGTEGGTYTFLVSNSDVNA-AIAFNVYVNT 411

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 68.9 bits (168), Expect = 5e-15
 Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV------ILPTGSLFFL 54
           +   +     L C A G PEPTI+WY      +   +      V        P G L   
Sbjct: 416 LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQ 475

Query: 55  RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
             +     +  G   C A N VG   S       
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGK-TSAYFNFAF 508

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 68.9 bits (168), Expect = 5e-15
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 2   VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETS---KSDAKSQRVILPTGSLFFLRVV 57
           ++ + E  T+ C  +         W ++    +      S            +L      
Sbjct: 222 LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSA- 280

Query: 58  HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
              +  D GV+ C A N+ G+A +   TL+V    F   F
Sbjct: 281 ---RVNDSGVFMCYANNTFGSA-NVTTTLEVVDKGFINIF 316

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 59.7 bits (144), Expect = 1e-11
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 7/104 (6%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
              ++    + C     PE T    K  +     K     + +  P   +    V   K+
Sbjct: 125 YGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKD---LRFIPDPKAGIMIKSV---KR 177

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAY 105
                   C       + +S    L+V      +       ++Y
Sbjct: 178 AYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY 221

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 59.3 bits (143), Expect = 1e-11
 Identities = 9/96 (9%), Positives = 28/96 (29%), Gaps = 20/96 (20%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++V   + + L C   G     ++W  +                          +     
Sbjct: 46  LIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQ----------NEWITEKA---- 87

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
           +  + G Y C  ++ +  ++     ++    +F + 
Sbjct: 88  EATNTGKYTCTNKHGLSNSIY--VFVRDPAKLFLVD 121

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 68.1 bits (166), Expect = 4e-16
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 16/102 (15%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAK-----------SQRVILPTG 49
                   V L+C+A G P P I+W+ +G+      S              +        
Sbjct: 31  QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAS 90

Query: 50  SLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           ++    +     E+D G Y C A N            +V  V
Sbjct: 91  TISIDTL----VEEDTGTYECRASNDPDRNHLT-RAPRVKWV 127

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 70.9 bits (173), Expect = 5e-16
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 20/88 (22%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
               +N   T  C+A G P P ++  KDG                LP G    +      
Sbjct: 195 WTWPENSQQTPMCQAWGNPLPELKCLKDGTFP-------------LPIGESVTVT----- 236

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                G Y C AR++ G  V+R  T+ V
Sbjct: 237 -RDLEGTYLCRARSTQGE-VTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 19/89 (21%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
           V++   VT+ C+A  + + T+       L   +                    ++    E
Sbjct: 110 VSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRA------------------QLLLKATPE 151

Query: 63  QDGGVYWCLARNSV-GTAVSRNATLQVAV 90
            +G  + C A   V G  + +N T ++ V
Sbjct: 152 DNGRSFSCSATLEVAGQLIHKNQTRELRV 180

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 7/87 (8%), Positives = 20/87 (22%), Gaps = 11/87 (12%)

Query: 7  EPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
             T+ C  +G     E  +      +    + +            S+         +++
Sbjct: 19 TQGTVVCSLDGLFPVSEAQVHLALGDQ--RLNPTVTYGNDSFSAKASV-----SVTAEDE 71

Query: 64 DGGVYWCLARNSVGTAVSRNATLQVAV 90
                C       +      T+ +  
Sbjct: 72 GTQRLTCAVILGNQS-QETLQTVTIYS 97

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.4 bits (175), Expect = 5e-16
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
               + +T+ C  + +    +      E V +  S+     V +  G LFF +V    + 
Sbjct: 258 AHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSN---GSVSVRNGDLFFKKV----QV 310

Query: 63  QDGGVYWCLARNSVGTAVSRNATLQV 88
           +DGGVY C A        + +  L+V
Sbjct: 311 EDGGVYTCYAMGETFNE-TLSVELKV 335

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 67.3 bits (164), Expect = 1e-15
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 5  KNEPVTLNCKAEGKPEPTIEWYKDGELVETS-----KSDAKSQRVILPTGSLFFLRVVHG 59
          +     +    +G+P P++ W  +G ++  +     +    +    +  G L   +  H 
Sbjct: 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH- 72

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              + G Y  LA N  G A S +     
Sbjct: 73 ---VNNGNYTLLAANPFGQA-SASIMAAF 97

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 69.6 bits (170), Expect = 1e-15
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAK-SQRVILPTGSLFFLRVVHG 59
           +V  + E   + C A           K G+       ++           +L    V   
Sbjct: 196 LVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAV--- 252

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              QD G+Y C+A N VGT  +     QV
Sbjct: 253 -DFQDAGIYSCVASNDVGTR-TATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 64.6 bits (157), Expect = 9e-14
 Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 9/104 (8%)

Query: 1   MVVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           + V + +   L C       + ++   ++G      K+         P       +    
Sbjct: 99  VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT----VYFFSPWRGFIIRKA--- 151

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLS 103
            K  D   Y C    +   + S    L+V  V       + + S
Sbjct: 152 -KVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPS 194

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 64.6 bits (157), Expect = 1e-13
 Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 16/90 (17%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          +VV   E VTL C + G    ++EW        T   ++       P  +L         
Sbjct: 14 LVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPES-------PGSTLTTRNA---- 58

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            ++ G Y C          S    L V  
Sbjct: 59 TFKNTGTYRCTELEDPMAG-STTIHLYVKD 87

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 69.5 bits (169), Expect = 4e-15
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 20/88 (22%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
               +N   T  C+A G P P ++  KDG                LP G    +      
Sbjct: 380 WTWPENSQQTPMCQAWGNPLPELKCLKDGTFP-------------LPIGESVTVT----- 421

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                G Y C AR++ G   +R  T+ V
Sbjct: 422 -RDLEGTYLCRARSTQGEV-TREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 12/100 (12%)

Query: 2   VVAKNEPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
                + +TL C+ EG   +   T+   +  + ++          V  P      + V  
Sbjct: 97  WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE------PAVGEPAEVTTTVLVR- 149

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFF 98
             ++  G  + C     +            A         
Sbjct: 150 --RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL 187

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 52.2 bits (124), Expect = 4e-09
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 19/89 (21%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
           V++   VT+ C+A  + + T+       L   ++                 L+      E
Sbjct: 295 VSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ---------------LLLKAT---PE 336

Query: 63  QDGGVYWCLARNSV-GTAVSRNATLQVAV 90
            +G  + C A   V G  + +N T ++ V
Sbjct: 337 DNGRSFSCSATLEVAGQLIHKNQTRELRV 365

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 14/87 (16%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          ++ +   V + C         +         ET     K   +      ++ L  V    
Sbjct: 10 ILPRGGSVLVTCSTSCDQPMLLGI-------ETPLPK-KELLLPGNNRKVYELSNV---- 57

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
           Q+     C +    G + +    L V
Sbjct: 58 -QEDSQPMCYSNCPDGQS-TAKTFLTV 82

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 64.6 bits (158), Expect = 4e-15
 Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           V  +   V   CK E   + T + WY     +E   +  K +  I     +  L V   
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE---NSEKYE--ITYEDGVAILYVKDI 65

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           K  D G Y C   N  G   S  A L V
Sbjct: 66 TKL-DDGTYRCKVVNDYGEDSSY-AELFV 92

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 67.4 bits (164), Expect = 5e-15
 Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 10/89 (11%)

Query: 1   MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
                     L C+  EG      EW K  +               + +  +        
Sbjct: 131 GSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP----TPWLAEMTSPVISVKNA--- 183

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              +  G Y C  +N VG+       L V
Sbjct: 184 -SSEYSGTYSCTVQNRVGSD-QCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 54.3 bits (130), Expect = 4e-10
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 31/116 (26%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPT----IEWYK---------------DGELVETSKSDAKS 41
           +  AK E   L CK    PE      IEW                  G+ +  +      
Sbjct: 10  IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLK 69

Query: 42  QRVILPT-------GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            RV   +        S+    +    +  D G Y C  + + G A ++   L V V
Sbjct: 70  GRVHFTSNDVKSGDASINVTNL----QLSDIGTYQCKVKKAPGVA-NKKFLLTVLV 120

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 68.4 bits (166), Expect = 6e-15
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 19/101 (18%)

Query: 2   VVAKNEPVTLNC-----------KAEGKPEPTIEWYKDG---ELVETSKSDAKSQRVILP 47
            V ++EP  + C                   T+ WY      +L E         R+   
Sbjct: 18  QVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE 77

Query: 48  TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              L+F          D G Y C+ RN+   +      L+V
Sbjct: 78  KDVLWFRPT----LLNDTGNYTCMLRNTTYCS-KVAFPLEV 113

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 10/102 (9%)

Query: 1   MVVAKNEPVTLNCKA----EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS-----L 51
                 E + + C             + W  DG+  +    D      I  + +      
Sbjct: 236 YEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRT 295

Query: 52  FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
             L +     E     Y C AR++ G   ++ A ++  V   
Sbjct: 296 QILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVKQKVPAP 336

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 57.2 bits (137), Expect = 6e-11
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 10  TLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW 69
            ++       +PTI WY     ++          VI    +L FL         + G Y 
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNFN------NVIPEGMNLSFLIA----LISNNGNYT 193

Query: 70  CLAR---NSVGTAVSRNATLQVAVVIFFI 95
           C+     N     ++R  T++V       
Sbjct: 194 CVVTYPENGRTFHLTRTLTVKVVGSPKNA 222

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 68.2 bits (166), Expect = 6e-15
 Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 14/88 (15%)

Query: 2   VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                   TL C A   PEPT   W      +            +     L    V    
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPL--------PPFAVAQGAQLLIRPV---- 275

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +       C   N++G       T+QV
Sbjct: 276 DKPINTTLICNVTNALGAR-QAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 66.3 bits (161), Expect = 3e-14
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 5/89 (5%)

Query: 2   VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            +         C +  G+P   I W+ D   +  +          +   SL+ L      
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS--- 184

Query: 61  KEQDGGVYWCLARNSVGTA-VSRNATLQV 88
            + DG    C   +            L V
Sbjct: 185 SQVDGKNVTCKVEHESFEKPQLLTVNLTV 213

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 17/107 (15%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPT-----IEWYKDGELVETSKSDAKSQRVILPTGSLFFLR 55
           +     + VTL C  +           + W + GE    +            +  L F+ 
Sbjct: 10  VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69

Query: 56  VVHGK------------KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
              G             + +D G Y CL       + S +  L+V  
Sbjct: 70  ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.2 bits (167), Expect = 7e-15
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
           + +++     L C+    P  +++W      V +  S     R+ +L  G+L F  V   
Sbjct: 362 LNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASR--HPRISVLNDGTLNFSHV--- 414

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
               D GVY C+  N  G + + +A L V
Sbjct: 415 -LLSDTGVYTCMVTNVAGNS-NASAYLNV 441

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 65.2 bits (159), Expect = 1e-14
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 15/88 (17%)

Query: 2   VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
              + E + L C +   KP   + ++++G+  + S  D           +    +     
Sbjct: 96  EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD----------PTFSIPQA---- 141

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                G Y C          S+  T+ V
Sbjct: 142 NHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 64.5 bits (157), Expect = 2e-14
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 20/95 (21%)

Query: 3  VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          V + + VTL C+    PE  +I+W+ +G L+ T             T   +  +      
Sbjct: 16 VLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------------TQPSYRFKA----N 59

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
            D G Y C    +   ++S    L V      + 
Sbjct: 60 NNDSGEYTCQTGQT---SLSDPVHLTVLFEWLVLQ 91

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 65.3 bits (159), Expect = 2e-14
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 15/88 (17%)

Query: 2   VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           VV + +P+ L C          + +YKDGE ++    +           ++         
Sbjct: 96  VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN----------HNISITNA---- 141

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             +D G Y+C  +       S    + V
Sbjct: 142 TVEDSGTYYCTGKVWQLDYESEPLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 60.7 bits (147), Expect = 7e-13
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 20/95 (21%)

Query: 3  VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          + K E VTL C      E  + +W+ +G L E +              SL  +      K
Sbjct: 16 IFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------------NSSLNIVNA----K 59

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
           +D G Y C  +       S    L+V      + 
Sbjct: 60 FEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQ 91

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
           + V +     L C+A      ++ W      V T  +     R+ +L  G+L F  V   
Sbjct: 351 LNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAY--KVRIAVLSDGTLNFTNV--- 404

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              QD G+Y C+  NSVG   + +ATL V
Sbjct: 405 -TVQDTGMYTCMVSNSVGNT-TASATLNV 431

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 66.5 bits (161), Expect = 2e-14
 Identities = 15/108 (13%), Positives = 27/108 (25%), Gaps = 24/108 (22%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK-------------------SDAKSQR 43
           V +   +T+ C         + WY      E  +                   S+   + 
Sbjct: 148 VDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRA 207

Query: 44  VILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
                 +L         K  D G  WC      G  +  + +  +  V
Sbjct: 208 SFSGARNLVIRAA----KITDAGRVWCELATGQGE-LDADRSSTILKV 250

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 42.6 bits (99), Expect = 6e-06
 Identities = 20/119 (16%), Positives = 26/119 (21%), Gaps = 30/119 (25%)

Query: 3   VAKNEPVTLNCK---AEGKPEPTIEWYKDGE------------LVETSKSDAKSQRVILP 47
           V     V L C    A     P I W K                 +              
Sbjct: 14  VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKE 73

Query: 48  TGSLFFLRVVHGK-----------KEQDGGVYWCLARNSVGT----AVSRNATLQVAVV 91
           +   F  R                  QDGG YWC              +++  L+V   
Sbjct: 74  SFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 132

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 67.1 bits (163), Expect = 2e-14
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 13/88 (14%)

Query: 2   VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
              +   V L CKA+  P  T   W      +         + V     +LFF   +   
Sbjct: 243 WYLQRMDVKLTCKADANPPATEYHWTTLNGSL--------PKGVEAQNRTLFFKGPI--- 291

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                G Y C A N +GT  S    + +
Sbjct: 292 NYSLAGTYICEATNPIGTR-SGQVEVNI 318

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 62.8 bits (152), Expect = 6e-13
 Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 6/84 (7%)

Query: 6   NEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
           ++ +   C  A GKP   + W    +     +        +        +      +E  
Sbjct: 150 DKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPS----REAH 205

Query: 65  GGVYWCLARNSVGTAVSRNATLQV 88
                C+    +      + TL V
Sbjct: 206 QQSLACIVNYHMDR-FKESLTLNV 228

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 19/112 (16%), Positives = 25/112 (22%), Gaps = 18/112 (16%)

Query: 1   MVVAKNEPVTLNCKAEGKPEP----TIEWYKDGELV-----------ETSKSDAKSQRVI 45
           M       V L+C             + W K                  S      +RV 
Sbjct: 24  MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVE 83

Query: 46  LPTGSL--FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI 95
               S     +R+   + E D GVY C               L V       
Sbjct: 84  FLRPSFTDGTIRLSRLELE-DEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.1 bits (163), Expect = 2e-14
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETS-----KSDAKSQRVILPTGSLFFLR 55
               +     +    +G+P P++ W  +G ++  +     +    +    +  G L   +
Sbjct: 256 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 315

Query: 56  VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
                   + G Y  LA N  G A S +     
Sbjct: 316 P----THVNNGNYTLLAANPFGQA-SASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.1 bits (163), Expect = 2e-14
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           V   + V L C+ EG+      W   + E   T       +   LP+  L    V     
Sbjct: 170 VDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV-----MKSGGLPSLGLTLANVTS--- 221

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           + +     C A N VG A   +  + V+ 
Sbjct: 222 DLNRKNVTCWAENDVGRA-EVSVQVNVSF 249

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 7/95 (7%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
                  +   C  +  P+    W KD    E S      +  +   G+   +       
Sbjct: 14  DDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDS-----PRLEVESKGNKTKM-TFKDLG 66

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
             D G+Y C   ++ G A S     +    +  +S
Sbjct: 67  MDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALS 101

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 64.2 bits (156), Expect = 1e-13
 Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 10/89 (11%)

Query: 1   MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
             V     V L CK    K E  I WYKD   +   +              +  L +   
Sbjct: 231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK-------HDFKDGICTLLITEF 283

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            K+ D G+Y  + ++  G   S    L  
Sbjct: 284 SKK-DAGIYEVILKDDRGKDKS-RLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 57.7 bits (139), Expect = 4e-11
 Identities = 10/92 (10%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           ++ K +        +      + +  + + +       K +  I     +  + +   + 
Sbjct: 119 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP---KYKMHIDRNTGIIEMFMEKLQD 175

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
           E D G Y    ++   T    ++T+ +   +F
Sbjct: 176 E-DEGTYTFQLQDGKATN---HSTVVLVGDVF 203

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 65.7 bits (160), Expect = 3e-14
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 16/88 (18%)

Query: 2   VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           V  + EP+ L C A   K    + +Y++G+  +    +           +L  L+     
Sbjct: 93  VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN----------SNLTILKT---- 138

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                G Y C          S   ++ V
Sbjct: 139 NISHNGTYHCSGMGKHRYT-SAGISVTV 165

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 63.0 bits (153), Expect = 3e-13
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 20/96 (20%)

Query: 3  VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          V + E VTL+C+    P   + +W+ +G   +TS            T S           
Sbjct: 13 VFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------------TPSYRITSA----S 56

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
            D G Y C    S     S    L++      +  
Sbjct: 57 VNDSGEYRCQRGLS---GRSDPIQLEIHRGWLLLQV 89

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 19/94 (20%)

Query: 2   VVAKNEPVTLNCKAEGKPEP-----TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRV 56
            + +   VTL+C+ +   +         +Y   + +    +          +     L  
Sbjct: 181 PLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT----------SSEYQILTA 230

Query: 57  VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
               + +D G+YWC A    G  + R+  L++ V
Sbjct: 231 ----RREDSGLYWCEAATEDGNVLKRSPELELQV 260

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 64.7 bits (157), Expect = 4e-14
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             V + + VTL C +       I+W  + + ++ +      +  +    S+  +  +   
Sbjct: 120 TTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLT-----ERMTLSQNNSILRIDPI--- 170

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           K +D G Y C   N V    S +  L +  
Sbjct: 171 KREDAGEYQCEISNPVSVRRSNSIKLDIIF 200

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 59.3 bits (143), Expect = 4e-12
 Identities = 20/100 (20%), Positives = 25/100 (25%), Gaps = 18/100 (18%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVE-------------TSKSDAKSQRV-ILPT 48
           VA++  V L             WYK                        A S R  I   
Sbjct: 11  VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70

Query: 49  GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           GSL F  +      +D GVY     +             V
Sbjct: 71  GSLLFQMI----TMKDMGVYTLDMTDENYRRTQATVRFHV 106

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 65.5 bits (159), Expect = 5e-14
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGE---LVETSKSDAKSQRVILPTGSLFFLRVVH 58
           VV + E +TL C   G      EW    +    +    +D            L       
Sbjct: 192 VVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSA-- 249

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
             + +D G Y C    SV         + + VV
Sbjct: 250 --ELEDSGTYTCNVTESVNDH-QDEKAINITVV 279

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 57.8 bits (139), Expect = 3e-11
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          +V+  +    L C         + W +  +      + A+       +  L    +    
Sbjct: 10 LVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGT---FSSVLTLTNL---- 58

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             D G Y+C   +S G        L + V
Sbjct: 59 TGLDTGEYFCTHNDSRGLETDERKRLYIFV 88

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 48.5 bits (115), Expect = 5e-08
 Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 16/90 (17%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            + +   +T+ C+    P+  +  ++    V            +       F  +     
Sbjct: 106 FLTEITEITIPCRVTD-PQLVVTLHEKKGDVALP---------VPYDHQRGFSGI----- 150

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
             +   Y C          S    +    V
Sbjct: 151 -FEDRSYICKTTIGDREVDSDAYYVYRLQV 179

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 65.6 bits (159), Expect = 5e-14
 Identities = 14/105 (13%), Positives = 22/105 (20%), Gaps = 19/105 (18%)

Query: 2   VVAKNEPVTLNCKAEG---------KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLF 52
           + A  EP +  C               +  + W K G+               +  G L+
Sbjct: 40  MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR-------PLNRRVKNGDLW 92

Query: 53  FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISF 97
                          Y C      G  V       +      I  
Sbjct: 93  IANYT---SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPE 134

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 60.6 bits (146), Expect = 4e-12
 Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 11/95 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEP----TIEWYKDGELVETSKSDAKSQ---RVILPTGSLFF 53
           + V   EP  + C A           I+W      +        S       +   +L+F
Sbjct: 238 INVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYF 297

Query: 54  LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
             V    +E  G  Y C   N      +   T+ +
Sbjct: 298 ENV---TEEYIGNTYTCRGHNYYFDK-TLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 59.5 bits (143), Expect = 9e-12
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 11/93 (11%)

Query: 1   MVVAKNEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           +       + L C     K    I WYK+ + +          +      +L        
Sbjct: 138 LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID-----GTKYSQSGQNLIIHNP--- 189

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVI 92
            + +D G Y C         +  +  +    ++
Sbjct: 190 -ELEDSGRYDCYVHYDDVR-IKNDIVVSRCKIL 220

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 65.4 bits (159), Expect = 5e-14
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 6/89 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTI-EWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           +V  + E   + C A             +   +   +             +L   +V   
Sbjct: 196 LVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQV--- 252

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              Q  G Y C+A N  G   S +   +V
Sbjct: 253 -DFQHAGNYSCVASNVQGKH-STSMFFRV 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 59.2 bits (143), Expect = 8e-12
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 1   MVVAKNEPVTLNCKAEG-KPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
           +VV +++   L C       E  +   +  G  +        +     P       R   
Sbjct: 99  VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRH-----TNYSFSPWHGFTIHRA-- 151

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVI 92
             K      Y C A       +S +  L+V  VI
Sbjct: 152 --KFIQSQDYQCSALMGGRKVMSISIRLKVQKVI 183

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 21/90 (23%), Positives = 25/90 (27%), Gaps = 16/90 (17%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          +VV     VTL C   G    ++EW        T  SD  S         L         
Sbjct: 14 LVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSS-------SILSTNNA---- 58

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            Q+ G Y C          S    L V  
Sbjct: 59 TFQNTGTYRCTEPGDPLGG-SAAIHLYVKD 87

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 63.1 bits (153), Expect = 1e-13
 Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 17/87 (19%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            + + + +TL  ++     P+++                  + I    +L   ++    +
Sbjct: 108 HLLQGQSLTLTLESPPGSSPSVQCRSPR------------GKNIQGGKTLSVSQL----E 151

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQV 88
            QD G + C    +    V     + V
Sbjct: 152 LQDSGTWTCTVLQNQKK-VEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 13/99 (13%), Positives = 22/99 (22%), Gaps = 11/99 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           ++  K + V L C A  K      W    ++       +   +           R     
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 61  -----------KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                      K +D   Y C   +           L  
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 103

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 15/88 (17%)

Query: 2   VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           V  + +P+ L C + +      + + ++G+  +    +                +     
Sbjct: 99  VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHN----------SDFHIPKA---- 144

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             +D G Y+C          S    + +
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 58.7 bits (142), Expect = 5e-12
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 3  VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          V + + VTL C+    PE  + +W+ +  L+ +               S F         
Sbjct: 19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------------ASSYFIDAA----T 62

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
            D G Y C    S     S    L+V +    + 
Sbjct: 63 VNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQ 94

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 62.6 bits (152), Expect = 3e-13
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 12/90 (13%)

Query: 1   MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETS-KSDAKSQRVILPTGSLFFLRVVH 58
             V     V L CK    K E  I WYKD   +    K D K     L         ++ 
Sbjct: 126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL---------LIT 176

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              ++D G+Y  + ++  G   SR   L  
Sbjct: 177 EFSKKDAGIYEVILKDDRGKDKSR-LKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          ++ K +        +      + +  + + +       K +  I     +  + +   + 
Sbjct: 14 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEI---FEGPKYKMHIDRNTGIIEMFMEKLQD 70

Query: 62 EQDGGVYWCLARNSVGTAVS 81
          E D G Y    ++   T  S
Sbjct: 71 E-DEGTYTFQLQDGKATNHS 89

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 10/88 (11%), Positives = 26/88 (29%), Gaps = 15/88 (17%)

Query: 2   VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           V  + +P+ L C +        + + ++G+  +                  +  +     
Sbjct: 99  VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH----------NSDFYIPKA---- 144

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             +D G Y+C          S    + +
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVQITI 172

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 20/87 (22%)

Query: 3  VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          V + + VTL C+    PE  + +W+ +  L+ +               S F         
Sbjct: 19 VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------------ASSYFIDAA----T 62

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
            D G Y C  + S    +S    L+V
Sbjct: 63 VDDSGEYRCQTQLST---LSDPVQLEV 86

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 60.0 bits (145), Expect = 6e-13
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 15/98 (15%)

Query: 1   MVVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVETSKSDAKSQ-------RVILPTGS 50
             V   E +T   K + +    +PTI+W+K   +   SK+    Q          + T  
Sbjct: 17  GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 76

Query: 51  LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           +  ++     K+   G Y C          S +  L+V
Sbjct: 77  MQIIKA----KDNFAGNYRCEVTYKDKF-DSCSFDLEV 109

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 61.4 bits (148), Expect = 8e-13
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 8/89 (8%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           V      V L C     P   I W  + + +     D   + +      L         +
Sbjct: 124 VSISGTTVILTCPQY--PGSEILWQHNDKNI---GGDEDDKNIGSDEDHLSLKEF---SE 175

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            +  G Y C  R S     +    L+  V
Sbjct: 176 LEQSGYYVCYPRGSKPEDANFYLYLRARV 204

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 53.4 bits (127), Expect = 7e-10
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 16/84 (19%)

Query: 6  NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
          +  V L C A       I W+KDG+++     D    +     GS           +   
Sbjct: 18 DGSVLLTCDA---EAKNITWFKDGKMIGFLTED----KKKWNLGSN---------AKDPR 61

Query: 66 GVYWCLARNSVGTAVSRNATLQVA 89
          G+Y C    +    +     +  A
Sbjct: 62 GMYQCKGSQNKSKPLQVYYRMGSA 85

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 61.7 bits (149), Expect = 1e-12
 Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 17/87 (19%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            + + + +TL  ++     P+++                  + I    +L   ++    +
Sbjct: 107 HLLQGQSLTLTLESPPGSSPSVQCRSPRG------------KNIQGGKTLSVSQL----E 150

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQV 88
            QD G + C    +    V     + V
Sbjct: 151 LQDSGTWTCTVLQNQKK-VEFKIDIVV 176

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 14/99 (14%), Positives = 22/99 (22%), Gaps = 12/99 (12%)

Query: 2   VVAK-NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           V+ K  + V L C A  K      W    ++       +   +           R     
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 61  -----------KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                      K +D   Y C   +           L  
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 102

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 14/94 (14%), Positives = 22/94 (23%), Gaps = 7/94 (7%)

Query: 2   VVAKNEPVTLNCKAEGKPEP----TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV 57
           V        L  +AE         T +       V+    D K Q        L   + +
Sbjct: 204 VEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL 263

Query: 58  HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
              +    G          G  + +   L V   
Sbjct: 264 P--QYAGSGNLTLALEAKTGK-LHQEVNLVVMRA 294

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 19/82 (23%)

Query: 7   EPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
               L C+  G   P   +    + +  + SK                 + V       +
Sbjct: 297 LQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR-------------EKAVWV----LNPE 339

Query: 65  GGVYWCLARNSVGTAVSRNATL 86
            G++ CL  +S    +  N  +
Sbjct: 340 AGMWQCLLSDSGQVLLESNIKV 361

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 58.5 bits (141), Expect = 2e-12
 Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 15/98 (15%)

Query: 1   MVVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVETSKS-------DAKSQRVILPTGS 50
             V     +T + +  G      P ++W+K   +  +SK        D+  +   +    
Sbjct: 14  GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73

Query: 51  LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           L         +    G Y C            N  L V
Sbjct: 74  LHITDA----QPAFTGSYRCEVSTKDKFD-CSNFNLTV 106

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 58.6 bits (141), Expect = 2e-12
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLR----VVH 58
           ++  E + LNC A  +    I++  +    +       ++ +   +GS          + 
Sbjct: 20  LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           G    D G+Y C A + + T    +  ++V
Sbjct: 80  GVTRSDQGLYTCAASSGLMTK-KNSTFVRV 108

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 57.3 bits (139), Expect = 3e-12
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
            VA  E V L C+      P + W KD + +       KSQ+  ++  G++  L +   
Sbjct: 18 QWVAPGEDVELRCELSRAGTP-VHWLKDRKAIR------KSQKYDVVCEGTMAMLVIRGA 70

Query: 60 KKEQDGGVYWCLARNSVGTA 79
            + D G Y C    S  TA
Sbjct: 71 SLK-DAGEYTCEVEASKSTA 89

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 59.7 bits (144), Expect = 6e-12
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 11/94 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETS-----KSDAKSQRVILPTGSLFFL 54
            ++ K +  T+ C  +         W K     +        S  +         +L   
Sbjct: 198 HLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTIS 257

Query: 55  RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
                 +  D GV+ C A N+ G+A +   TL+V
Sbjct: 258 SA----RVDDSGVFMCYANNTFGSA-NVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 9/108 (8%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           +   ++    + C             + DG+ + T  +      V  P   +    V   
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTF-----VPNPKAGITIKNVK-- 153

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLY 107
            +        C A+       S   TL+V   I  I       +++L 
Sbjct: 154 -RAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLL 200

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 47.0 bits (111), Expect = 2e-07
 Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 17/81 (20%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          ++V   + ++L C         + W       E  ++                 +     
Sbjct: 22 LIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENK---------KNEWIQEKA---- 64

Query: 61 KEQDGGVYWCLARNSVGTAVS 81
          +    G Y C   N + +++ 
Sbjct: 65 EATRTGTYTCSNSNGLTSSIY 85

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 13/96 (13%), Positives = 24/96 (25%), Gaps = 10/96 (10%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +    + V+L C   G   P   W    +     K   +       T S   +  V   
Sbjct: 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNE------GTTSTLTMNPV--- 61

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
             +   Y C A         +   +++        
Sbjct: 62 SFGNEHSYLCTATCESRKL-EKGIQVEIYSFPKDPE 96

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 3   VAKNEPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           +   +P+T+ C            I+  K   L+++ +    + R  L T SL        
Sbjct: 103 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV- 161

Query: 60  KKEQDGGVYWCLARNSVG------TAVSRNATLQVAV 90
             E  G V  C A+  +       T       LQV +
Sbjct: 162 -IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI 197

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +V        L C+AEG P+  + W      V + K+   + +       LF +      
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSK---REEKLFNVTSTLRI 182

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                 +++C  R       +  A L +
Sbjct: 183 NTTTNEIFYCTFRRLDPE-ENHTAELVI 209

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 27/116 (23%)

Query: 2   VVAKNEPVTLNCKAEGKP-----EPTIEW---------YKDGELVETSKSDAKSQRVILP 47
           VV     +T+ CK   +         + W         +  GE     +  +  QR  L 
Sbjct: 12  VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71

Query: 48  -------TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
                    +L    V    K QD GVY C+   S G A  +  T++V      I+
Sbjct: 72  KDQLSLGNAALQITDV----KLQDAGVYRCMI--SYGGADYKRITVKVNAPYNKIN 121

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 55.5 bits (134), Expect = 2e-11
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
          + V   E     C+     + T +WYK+G  V  SK      R+ I   G    L +   
Sbjct: 18 LTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSK------RITISHVGRFHKLVIDDV 70

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
          + E D G Y  +      +    +A L    +
Sbjct: 71 RPE-DEGDYTFVPDGYALSL---SAKLNFLEI 98

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 55.1 bits (133), Expect = 4e-11
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 10/88 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + V +    T  C+        + W+ D   +  +    +   +    G    L +    
Sbjct: 23  VDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN----ELNEIDAQPGGYHVLTLRQLA 78

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            + D G  +  A    G   +  A L+V
Sbjct: 79  LK-DSGTIYFEA----GDQRAS-AALRV 100

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 54.3 bits (131), Expect = 5e-11
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          +        TL+C+   + +  + WYKDG+ + +S      +  +   G    L V    
Sbjct: 21 VQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSS-----KVRVEAVGCTRRLVVQQAG 74

Query: 61 KEQDGGVYWCLARNSVGTA 79
          +  + G Y C A     + 
Sbjct: 75 QA-EAGEYSCEAGGQQLSF 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 54.3 bits (131), Expect = 6e-11
 Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 9/81 (11%)

Query: 1  MVVAKNEPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVH 58
          M V + E  +  C  +         W   G+ V +S       R      G  + L V  
Sbjct: 18 MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS------RFQATRQGRKYILVVRE 71

Query: 59 GKKEQDGGVYWCLARNSVGTA 79
               D G      R     A
Sbjct: 72 AAPS-DAGEVVFSVRGLTSKA 91

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 57.3 bits (137), Expect = 7e-11
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 8   PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGG 66
           P    CK     +   +W   G     S+ +  S+  +     S      ++     D G
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG 522

Query: 67  VYWCLARNSVGTAVSRNATLQV 88
            YWC  +       +    + V
Sbjct: 523 WYWCGVKQGHFYGETAAVYVAV 544

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 55.8 bits (133), Expect = 2e-10
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 12/99 (12%)

Query: 1   MVVAKNEPVTLNC--KAEGKPEPTIEWYKDGELVET------SKSDAKSQRV---ILPTG 49
             V     VT+NC  K E   +    + + G             +   + R+   I  TG
Sbjct: 122 YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTG 181

Query: 50  SLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            L F  V++  +  D G Y C A +   +   +NA LQV
Sbjct: 182 QLLFSVVINQLRLSDAGQYLCQAGDDSNSN-KKNADLQV 219

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 13/114 (11%), Positives = 28/114 (24%), Gaps = 15/114 (13%)

Query: 1   MVVAKNEPVTLNCKAE---GKPEPTIEWYKDGE------LVETSKS--DAKSQRVIL--- 46
           +   +   V++ C              W + G       L+ +        + R  L   
Sbjct: 10  VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF 69

Query: 47  PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRF 100
           P    F + +    ++ D G Y C    +        +               +
Sbjct: 70  PENGTFVVNIAQLSQD-DSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVY 122

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 9/96 (9%)

Query: 7   EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL---PTGSLFFLRVVHGKKEQ 63
                 C+        +     G+     +      R++L        F + +   +KE 
Sbjct: 247 NVAKFLCRQSSGENCDVVVNTLGKRAPAFEG-----RILLNPQDKDGSFSVVITGLRKE- 300

Query: 64  DGGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFR 99
           D G Y C A +                V    +  R
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGE---------LVETSKS--DAKSQRVIL--P 47
           +       V + C    K   +I+++   E         LV++          R+ L   
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400

Query: 48  TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS 81
            G+  F  +++    +D G YWCL         +
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTT 434

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 53.9 bits (130), Expect = 8e-11
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          +    +E V L C+   + +    WYKDG+ VE S+       V+   G    L ++   
Sbjct: 20 LTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESE-----LLVVKMDGRKHRL-ILPEA 72

Query: 61 KEQDGGVYWCLARNSVGTA 79
          K QD G + C         
Sbjct: 73 KVQDSGEFECRTEGVSAFF 91

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 55.3 bits (133), Expect = 9e-11
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 18/88 (20%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            +       TL C+     +P +  Y+DG+ ++       SQRVI    +          
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQDGKHLKL------SQRVITHKWTT--------- 154

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQV 88
                  + C A N V    S    +  
Sbjct: 155 --SLSAKFKCTAGNKVSKE-SSVEPVSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 49.9 bits (119), Expect = 8e-09
 Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 14/99 (14%)

Query: 2   VVAKNEPVTLNCK--AEGKPEPTIEWYKDGELVETSKSDAKSQRV-------ILPTGSLF 52
             A  + + L+            I+W K  +  + ++   + +         +   G+L 
Sbjct: 10  WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLK 69

Query: 53  FLRVVHGKKEQDGGVYWCLARNSVGTAV-SRNATLQVAV 90
              +    K  D  +Y     ++ G  V  +   L++  
Sbjct: 70  IKHL----KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE 104

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 55.6 bits (133), Expect = 1e-10
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEW--------YKDGELVETSKSDAKSQRVILPTGSLFFL 54
           ++  E + LNC A  +    I++        ++  +LV           +     +L   
Sbjct: 117 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 176

Query: 55  RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            V       D G+Y C A + + T    +  ++V
Sbjct: 177 GV----TRSDQGLYTCAASSGLMT-KKNSTFVRV 205

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 11/94 (11%), Positives = 25/94 (26%), Gaps = 7/94 (7%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           +   KN+ V + C         +                   R+   +   F    +   
Sbjct: 19  ITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPD---GNRISWDSKKGF---TIPSY 71

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFF 94
                G+ +C A+ +  +  S    + V     +
Sbjct: 72  MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 105

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 3   VAKNEPVTLNCKAEGKPEPTIEWYKDG-ELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           V + +     C+      P + W+KD  EL ++ K   +        G+ + L +   K 
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY------NGNDYGLTINRVKG 547

Query: 62  EQDGGVYWCLARNSVGTAVSRNATLQVA 89
           + D G Y   A+NS GT       L V 
Sbjct: 548 D-DKGEYTVRAKNSYGTK-EEIVFLNVT 573

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 52.0 bits (125), Expect = 3e-10
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
          + VA   P     + E      + W + G  +  S       +  +   G+   L V   
Sbjct: 18 VEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASN------KYGLATEGTRHTLTVREV 70

Query: 60 KKEQDGGVYWCLARNSVGTA 79
              D G Y  +A +S    
Sbjct: 71 GPA-DQGSYAVIAGSSKVKF 89

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 52.5 bits (126), Expect = 3e-10
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
          +   + E V L C+   +P   + W KDGE V  S        + +    ++  L V+  
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESP------ALLLQKEDTVRRL-VLPA 74

Query: 60 KKEQDGGVYWCLARNSVGTA 79
           + +D G Y C   +   + 
Sbjct: 75 VQLEDSGEYLCEIDDESASF 94

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 52.3 bits (126), Expect = 3e-10
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
            V   + + L C+          W K+G  V+ S       R+ ++  G +  L + + 
Sbjct: 17 QTVNLGKEICLKCEISENIPGK--WTKNGLPVQESD------RLKVVQKGRIHKLVIANA 68

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            E D G Y         T     A + V
Sbjct: 69 LTE-DEGDYVFAPDAYNVTL---PAKVHV 93

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 52.4 bits (126), Expect = 3e-10
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 3  VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
          V+K   + L  +     +  ++W K+G+ ++ S     S+ +    G+   L +      
Sbjct: 28 VSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMS----GSKYIFESIGAKRTLTISQCSLA 82

Query: 63 QDGGVYWCLARNSVGTA 79
           D   Y C+      + 
Sbjct: 83 -DDAAYQCVVGGEKCST 98

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 51.5 bits (124), Expect = 4e-10
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 9/80 (11%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
          + V   E      +   +P+   +W   G+ +  S          I+  G    L ++H 
Sbjct: 15 VEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASP------DCEIIEDGKKHIL-ILHN 66

Query: 60 KKEQDGGVYWCLARNSVGTA 79
           +    G     A N+   A
Sbjct: 67 CQLGMTGEVSFQAANTKSAA 86

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 51.6 bits (124), Expect = 6e-10
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                E V L C+   + +  ++W+K+GE +         +  I   G    L ++ G 
Sbjct: 17 TTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKS---RYRIRVEGKKHIL-IIEGA 71

Query: 61 KEQDGGVYWCLARNSVGTA 79
           + D   Y  +      +A
Sbjct: 72 TKADAAEYSVMTTGGQSSA 90

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 51.6 bits (124), Expect = 6e-10
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 3/79 (3%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V   + V +  +   +    + W K+G  +    S     R     G    L +    
Sbjct: 18 QQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYR-FKKDGKRHIL-IFSDV 74

Query: 61 KEQDGGVYWCLARNSVGTA 79
           ++D G Y  +       A
Sbjct: 75 VQEDRGRYQVITNGGQCEA 93

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 53.7 bits (128), Expect = 8e-10
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 26/112 (23%)

Query: 1   MVVAKNEPVTLNCK---AEGKPEPTIEWYKDG------ELVETSKSDAK----------- 40
           + V   E V + C     E K    ++W          E V    S+             
Sbjct: 15  LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSH 74

Query: 41  -SQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
                    GSL    V    ++ D G+Y C  R    + V     +++ V+
Sbjct: 75  LVGDTFHNDGSLLLQDV----QKADEGIYTCEIRLKNESMVM-KKPVELWVL 121

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 30/113 (26%)

Query: 1   MVVAKNEPVTLNCKAEGKPEP---TIEWYKD----------------GELVETSKSDAKS 41
           + V   +   + C  +   E     + W                       +        
Sbjct: 128 LRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFR 187

Query: 42  QRVIL------PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            RV L        GS+    V    KE D G+Y C        +  +   L V
Sbjct: 188 NRVDLTGDISRNDGSIKLQTV----KESDQGIYTCSIYVGKLES-RKTIVLHV 235

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV---H 58
            V     V+L C  + +    +E  +       + +  +S+R  L    L   + +    
Sbjct: 13  TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
             + +D G Y CL          +  T++V      I 
Sbjct: 73  SVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMRID 109

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 3  VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
          V K   V    +    P+  ++WYK+G+ +  S      + +    G    L + + +  
Sbjct: 20 VDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPST-----KYIFEHKGCQRILFINNCQMT 73

Query: 63 QDGGVYWCLARNSVGTA 79
           D   Y+  A +   + 
Sbjct: 74 -DDSEYYVTAGDEKCST 89

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + V +       CK    P  T+ W K    +  S      +      G    L  +   
Sbjct: 18 LQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASG-----KHQPSQEGLTLRL-TISAL 70

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
          ++ D   Y C      G A SR A L V
Sbjct: 71 EKADSDTYTCDI----GQAQSR-AQLLV 93

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 10/80 (12%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
              +     L C+        +EW+K  E +          R  +   G+   L++   
Sbjct: 29 EEATEGATAVLRCELSKMAP--VEWWKGHETLRDGD------RHSLRQDGARCELQIRGL 80

Query: 60 KKEQDGGVYWCLARNSVGTA 79
            E D G Y C+      +A
Sbjct: 81 VAE-DAGEYLCMCGKERTSA 99

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 20/91 (21%)

Query: 2  VVAKNEPVTLNCKAEG-KPEP---TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV 57
               +  TL     G +P P   T  W KD +  E +            T +L      
Sbjct: 13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------------TATLTVADA- 59

Query: 58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
               ++ G Y    +++       +    +
Sbjct: 60 ---TSENAGSYKVTVQDTDTMTSVESEVFLM 87

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 23/104 (22%)

Query: 3   VAKNEPVTLNCK--------AEGKPEPTI--EWY--KDGELVETSKSDAKSQRV----IL 46
           VA    ++LN          + G P  TI   WY  ++G+L  T       + +    I 
Sbjct: 196 VALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSIT 255

Query: 47  PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           P G LF           D   +WC+A+         + T++VA 
Sbjct: 256 PDGHLFKESA----TYDDTAKFWCVAKLYQQIE---DETVEVAA 292

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 25/100 (25%)

Query: 2   VVAKNEPVTLNCK---AEGKPEP-----TIEWYKDGELVETSKSDAKSQRVILPTGSLFF 53
            V+    V L+     + GK           W K  ++++T             T  +  
Sbjct: 103 YVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-------------TQDITI 149

Query: 54  LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
                       GVY          + +  +T  +   + 
Sbjct: 150 QEF----TADKNGVYTVKVWGESEDSAASASTKIMLATMN 185

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 14/89 (15%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
          + V +    TL C       P ++W     ++          +  +   G++  L V + 
Sbjct: 18 LEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGD------KYSLRQEGAMLELVVRNL 70

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
          + + D G Y C      G   +  ATL V
Sbjct: 71 RPQ-DSGRYSCSF----GDQTTS-ATLTV 93

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 10/80 (12%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHG 59
             ++    TL C+        +EW K  E +          R  +   G+   L++   
Sbjct: 18 KEASEGATATLQCELS--KVAPVEWKKGPETLRDGG------RYSLKQDGTRCELQIHDL 69

Query: 60 KKEQDGGVYWCLARNSVGTA 79
              D G Y C+      +A
Sbjct: 70 SVA-DAGEYSCMCGQERTSA 88

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 50.0 bits (119), Expect = 8e-09
 Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 12/95 (12%)

Query: 1  MVVAKNEPVTLNCK--AEGKPEPTIEWYKDGELVETSKSDAKSQRV-----ILPTGSLFF 53
          +  A    + LN            + W +   LV   K   K         IL  G L  
Sbjct: 6  VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65

Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +       D G Y     ++ GT +  N  L +
Sbjct: 66 KNL----TRDDSGTYNVTVYSTNGTRIL-NKALDL 95

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 47.6 bits (113), Expect = 7e-08
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 17/81 (20%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           M+  +    TL C+     +  ++ Y+  E + + +                  + +  +
Sbjct: 105 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------------KTMSYQ 147

Query: 61  KEQDGGVYWCLARNSVGTAVS 81
                  + C A N V     
Sbjct: 148 WTNLRAPFKCKAVNRVSQESE 168

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 50.9 bits (121), Expect = 9e-09
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + V   +  T  C A G+       +  G   +   +  K  +V      +    V    
Sbjct: 174 VEVNAGQFATFQCSAIGRTVAGDRLWLQGI--DVRDAPLKEIKVTSSRRFIASFNV-VNT 230

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
            ++D G Y C+ R   G  +S  A L V   
Sbjct: 231 TKRDAGKYRCMIRTEGGVGISNYAELVVKEP 261

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 48.3 bits (114), Expect = 8e-08
 Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 10/81 (12%)

Query: 1  MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
          +     + VTL C   E +   T+ W        +  S     R       L    ++  
Sbjct: 16 LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-----RWAGMGRRL----LLRS 66

Query: 60 KKEQDGGVYWCLARNSVGTAV 80
           +  D G Y C         V
Sbjct: 67 VQLHDSGNYSCYRAGRPAGTV 87

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 47.8 bits (113), Expect = 9e-08
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 1   MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           +   K+  + L C++ G  P+P I+W  +      +               L+ +     
Sbjct: 128 VKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVA----DGVGLYAVAASVI 183

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
            +   G    C  R+S+     + A++ +A   F
Sbjct: 184 MRGSSGEGVSCTIRSSLLGL-EKTASISIADPFF 216

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 2   VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELV----ETSKSDAKSQRVILPTGSLFFLR- 55
           V+  +      C +  G P P I WY++G+ +    E +     + R +     L  L  
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS 189

Query: 56  --VVHGKKEQDGGVYWCLARNSV-----GTAVSRNATLQV 88
              +  +K+     + C A  S+     G   S    L +
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 17/104 (16%)

Query: 3   VAKNEPVTLNCKAEGKPEPT-IEWYKD---------------GELVETSKSDAKSQRVIL 46
           V + + V L+C   G  +   +EW+                 G  ++ +  D + +    
Sbjct: 12  VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPY 71

Query: 47  PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
              S   L  +   +  D   Y C+ R          A L V  
Sbjct: 72  QLDSQGRLV-LAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA 114

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 17/89 (19%)

Query: 6   NEPVTLNC----KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
             P  L+C      E  P  T  W  +       ++   S+  + P              
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPR------------P 185

Query: 62  EQDGGVYWCLARNSVGTA-VSRNATLQVA 89
           E  G    C  +         R   L V+
Sbjct: 186 EDHGTNLTCQMKRQGAQVTTERTVQLNVS 214

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 44.8 bits (105), Expect = 3e-07
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 8/82 (9%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
          V L C     P   I W  + + +     D   + +      L    +    + +  G Y
Sbjct: 24 VILTCPQY--PGSEILWQHNDKNI---GGDEDDKNIGSDEDHLS---LKEFSELEQSGYY 75

Query: 69 WCLARNSVGTAVSRNATLQVAV 90
           C  R S     +    L+  V
Sbjct: 76 VCYPRGSKPEDANFYLYLRARV 97

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           V+   E ++L C +   P       K+GEL        +         + F L  V    
Sbjct: 116 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHP-------ANFSLGPV---D 165

Query: 62  EQDGGVYWCLARNS 75
               G+Y C    +
Sbjct: 166 LNVSGIYRCYGWYN 179

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 42.6 bits (100), Expect = 5e-06
 Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 9/98 (9%)

Query: 2   VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           V+  +  V + C+A        +   K+    E  +   + +             +    
Sbjct: 19  VIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR---RLKFWNETDPEFVIDHM---- 71

Query: 61  KEQDGGVYWCLARNSVGTAV-SRNATLQVAVVIFFISF 97
                G Y C  R        S    L V  +      
Sbjct: 72  DANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFL 109

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 44.5 bits (105), Expect = 9e-07
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 17/81 (20%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           M+  +    TL C+     +  ++ Y+  E + +       Q+ +               
Sbjct: 110 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-----RQKTMSYQ------------ 152

Query: 61  KEQDGGVYWCLARNSVGTAVS 81
                  + C A N V     
Sbjct: 153 WTNLRAPFKCKAVNRVSQESE 173

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 12/98 (12%), Positives = 21/98 (21%), Gaps = 15/98 (15%)

Query: 1   MVVAKNEPVTLNC-------KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFF 53
            VV  +   T  C                I W  +   +   +       +I  T S   
Sbjct: 13  PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY-----TIINRTASS-- 65

Query: 54  LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           +                L    +   V    T+   + 
Sbjct: 66  VTFTDIASLNIQLTCNILTFGQLEQNVYG-ITIISGLP 102

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 15/91 (16%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           VV +   VTL C            YK+  +          Q         F +  V    
Sbjct: 34  VVPRGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGRIFQ-------ESFNMSPV---T 82

Query: 62  EQDGGVYWCLARNS----VGTAVSRNATLQV 88
               G Y C   +       +A S    + V
Sbjct: 83  TAHAGNYTCRGSHPHSPTGWSAPSNPVVIMV 113

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 42.6 bits (100), Expect = 8e-06
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           +V   E V L C ++   E     +K+G   + S+   +    +  + + F +  +    
Sbjct: 129 LVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGV--SKANFSIGPM---M 182

Query: 62  EQDGGVYWCLARNS----VGTAVSRNATLQVAVVIFFIS 96
               G Y C    +      +A S    + V       S
Sbjct: 183 LALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPS 221

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           +V   E V L C ++         +++G+  +T     +    +  + + F +  +    
Sbjct: 17  LVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGV--SKANFSIGPM---M 70

Query: 62  EQDGGVYWCLARNS----VGTAVSRNATLQVAVVIFFIS 96
           +   G Y C    +      +A S    + +  +    S
Sbjct: 71  QDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPS 109

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 8/74 (10%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            V   E VTL+C +           ++GE  E   S     +V     + F L       
Sbjct: 117 TVLAGESVTLSCSSRS-SYDMYHLSREGEAHERRFSA--GPKVNGTFQADFPLGPA---- 169

Query: 62  EQDGGVYWCLARNS 75
              GG Y C     
Sbjct: 170 -THGGTYRCFGSFR 182

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 41.9 bits (98), Expect = 5e-06
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 13/97 (13%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD--AKSQRVIL-----PTGSLFF 53
           + V + + +TL C    +   +++W                K+ +  L        S+  
Sbjct: 11  ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITV 70

Query: 54  LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
             V      QD GVY CL  +   +  ++   + V  
Sbjct: 71  PNV----TLQDEGVYKCLHYSD--SVSTKEVKVIVLA 101

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 13/89 (14%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            V   E VT  C+ +          K+G      +   K Q       + F L  V    
Sbjct: 112 EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQ-------AEFPLGPV---T 160

Query: 62  EQDGGVYWCLA--RNSVGTAVSRNATLQV 88
               G Y C     N   +  S    L V
Sbjct: 161 TAHRGTYRCFGSYNNHAWSFPSEPVKLLV 189

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 42.6 bits (100), Expect = 7e-06
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          +V K + VT+ C+         + + +G L    +     +         +   +     
Sbjct: 17 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERIN---KVKFYIPDM----N 68

Query: 62 EQDGGVYWCLARNSVG-TAVSRNATLQV 88
           +  G Y C+ R     +  S    L V
Sbjct: 69 SRMAGQYSCIYRVGELWSEPSNLLDLVV 96

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 41.7 bits (98), Expect = 9e-06
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 8/76 (10%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          +V K + VT+ C+         + + +G L    +     +         +   +     
Sbjct: 14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERI---NKVKFYIPDM----N 65

Query: 62 EQDGGVYWCLARNSVG 77
           +  G Y C+ R    
Sbjct: 66 SRMAGQYSCIYRVGEL 81

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 13/89 (14%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            V   E VT  C+ +          K+G      +   K Q       + F L  V    
Sbjct: 109 EVISGEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGYGKVQ-------AEFPLGPV---T 157

Query: 62  EQDGGVYWCLA--RNSVGTAVSRNATLQV 88
               G Y C     N   +  S    L V
Sbjct: 158 TAHRGTYRCFGSYNNHAWSFPSEPVKLLV 186

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 3   VAKNEPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
               E  TL+C+  G   +   T+   +  + +       +  R      +   L     
Sbjct: 101 QPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLA---- 156

Query: 60  KKEQDGGVYWCLARNSV---GTAVSRNATLQVAVVIFFIS 96
           ++E  G  + C A   +   G  +  N++    +  F +S
Sbjct: 157 RREDHGANFSCRAELDLRPHGLGLFENSSAPRELRTFSLS 196

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 9/82 (10%)

Query: 9   VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
             L C  +      + W     +++           ++   +L    +     E D GVY
Sbjct: 551 AELKCSQKS-NLARVFWKFQNGVLKAESPK----YGLMGRKNLLIFNL----SEGDSGVY 601

Query: 69  WCLARNSVGTAVSRNATLQVAV 90
            CL+   V          +  +
Sbjct: 602 QCLSEERVKNKTVFQVVAKHVL 623

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 13/85 (15%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQ--------RVILPTGSLFF 53
                 VT +      P   + W K  + V   ++              +   +GSL  
Sbjct: 6  YGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64

Query: 54 LRVVHGKKEQDGGVYWCLARNSVGT 78
            +       D   Y   + N   T
Sbjct: 65 YNL----TSSDEDEYEMESPNITDT 85

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 22/80 (27%)

Query: 9   VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY 68
           V L C        TI+W KDG ++    +   +  +                 +   G Y
Sbjct: 125 VLLTCGLTD---KTIKWLKDGSIISPLNATKNTWNL-------------GNNAKDPRGTY 168

Query: 69  WCLARNSVGTAVSRNATLQV 88
            C               LQV
Sbjct: 169 QCQGAKETSN------PLQV 182

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 16/72 (22%)

Query: 7  EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
            V L C  +   +  ++W K+G+ +         + ++L   S          + +D G
Sbjct: 15 TSVELTCPLD--SDENLKWEKNGQELP----QKHDKHLVLQDFS----------EVEDSG 58

Query: 67 VYWCLARNSVGT 78
           Y C    S   
Sbjct: 59 YYVCYTPASNKN 70

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          V++    VT+ C+            K+       + +    +      + F +  +    
Sbjct: 15 VISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPK----NKARFSIPSM---T 66

Query: 62 EQDGGVYWCLARNSVGT 78
          E   G Y C  R+ VG 
Sbjct: 67 EDYAGRYRCYYRSPVGW 83

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           +V   + VTL C++   P  T    K+            S+       + F +  V    
Sbjct: 110 LVTSGKSVTLLCQSR-SPMDTFLLCKERAAHPLLCLR--SEHGAQQHQAEFPMSPV---T 163

Query: 62  EQDGGVYWCLARNS 75
              GG Y C + + 
Sbjct: 164 SVHGGTYRCFSSHG 177

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 13/89 (14%)

Query: 1  MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
          + VA      L C+        +++W      +   +SD           S+  +R    
Sbjct: 17 VAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSD--------TGRSVLTVRNA-- 66

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
                G   C+      T       L V
Sbjct: 67 -SLSAAGTRVCVGSCGGRT-FQHTVQLLV 93

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 7   EPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
           + +TL C+ EG   +   T+   +  + ++   +  +   V            V  +++ 
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTT---------TVLVRRDH 152

Query: 64  DGGVYWCLARNSV---GTAVSRNATLQVAVVIFF 94
            G  + C     +   G  +  N +    +  F 
Sbjct: 153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFV 186

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 14/94 (14%)

Query: 1   MVVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLF----FLR 55
             +  +    + C   G  PEP + W ++GE +    +   +     P   L+     L 
Sbjct: 116 FEIPTSNIRRIICSTSGGFPEPHLSWLENGEEL----NAINTTVSQDPETELYAVSSKLD 171

Query: 56  VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVA 89
                       + CL +      V++      A
Sbjct: 172 F----NMTTNHSFMCLIKYGHLR-VNQTFNWNTA 200

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 11/102 (10%)

Query: 2   VVAKNEPVTLNCK----AEGKPEPTIEWYKDGELVETSKSDAKSQ------RVILPTGSL 51
                E  TL+C      E   +  I W K+ ++V T  S   +       R I    + 
Sbjct: 5   TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 52  FFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
             + +    +  D G Y C+       A  R    +V + + 
Sbjct: 65  LSIVI-LALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVK 105

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus} Length = 105

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 10/80 (12%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           V+  + VTL C    +    ++ + +G L    K   K Q       + F   V     
Sbjct: 15 GVSLGDTVTLRCHLP-RMAAWVQLWLNGTL-RFDKEKDKEQDA-----AEFSFAVT---N 64

Query: 62 EQDGGVYWCLARNSVGTAVS 81
           +D G Y C  + S     S
Sbjct: 65 LEDAGTYQCRYQVSEPLWTS 84

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          +V   E V L C ++   E  +  +++G   +T +   +    +  + + F +  +    
Sbjct: 18 LVKSEETVILQCWSDVMFEHFL-LHREGMFNDTLRLIGEHHDGV--SKANFSISRM---T 71

Query: 62 EQDGGVYWCLARNS 75
          +   G Y C    +
Sbjct: 72 QDLAGTYRCYGSVT 85

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 18/81 (22%)

Query: 9   VTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
           + L C  E      +  W   G  + +  +                L V    +      
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQPN----------------LTVSWDPRISSEQD 170

Query: 68  YWCLARNSVGTAVSRNATLQV 88
           Y C+A N+V    S + + Q 
Sbjct: 171 YTCIAENAVSNL-SFSVSAQK 190

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 11/74 (14%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
            V+    VTL C+           YK+G+       +   +       + F +  V    
Sbjct: 104 AVSSGGDVTLQCQTRY-GFDQFALYKEGDPAPYKNPERWYR-------ASFPIITV---T 152

Query: 62  EQDGGVYWCLARNS 75
               G Y C + +S
Sbjct: 153 AAHSGTYRCYSFSS 166

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 7/78 (8%)

Query: 3   VAKNEPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           VA  +  T+ C+          T+  ++  E +        +      T +         
Sbjct: 100 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTA---- 155

Query: 60  KKEQDGGVYWCLARNSVG 77
            +E     + CLA   + 
Sbjct: 156 DREDGHRNFSCLAVLDLM 173

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 11/96 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD--AKSQRVIL--PTGSLFFLRV 56
           + V +     L C+ +     +++W    +           +  R+ L   +     +  
Sbjct: 16  VTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS- 74

Query: 57  VHGKKEQDGGVYWCLARNSVGTA--VSRNATLQVAV 90
           V      D G Y C    S+ T    +  A L V  
Sbjct: 75  VSDVSLSDEGQYTC----SLFTMPVKTSKAYLTVLG 106

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 14/101 (13%)

Query: 1   MVVAKNEPVTLNCKAEGKPEP--TIEWYKDGELVET-------SKSDAKSQRV-ILPTGS 50
           +   K   + L C           + W +  +L+           S +   RV   P   
Sbjct: 13  ISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLG 72

Query: 51  LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
           L    +       D G Y+C+         +    L+V   
Sbjct: 73  LTLQSL----TVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 17/74 (22%)

Query: 7  EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
          E V L C  +   E  I W  D                +L +G    ++V       D G
Sbjct: 22 EMVVLTC--DTPEEDGITWTLDQS------------SEVLGSGKTLTIQVKE---FGDAG 64

Query: 67 VYWCLARNSVGTAV 80
           Y C     V +  
Sbjct: 65 QYTCHKGGEVLSHS 78

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 1   MVVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVETSKSDAKSQ-------RVILPTGS 50
           + V   +   +  K  GK    +PTI+W+K   L   SKS A+            + T  
Sbjct: 22  VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVE 81

Query: 51  LFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           L   +V       D G Y    +       S    + V
Sbjct: 82  LHIGKV----VLGDRGYYRLEVKAKDTC-DSCGFNIDV 114

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 5/74 (6%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           VV   E VTL C +  +        ++G+   +   D++               V     
Sbjct: 110 VVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPV----T 164

Query: 62  EQDGGVYWCLARNS 75
                +  C     
Sbjct: 165 PSHRWMLRCYGSRR 178

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          V+++   VT+ C+            K+G           +Q  + P     F   +    
Sbjct: 15 VISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWD-----TQNPLEPKNKARFS--IPSMT 66

Query: 62 EQDGGVYWCLARNSVGT 78
          E   G Y C   +  G 
Sbjct: 67 EHHAGRYRCYYYSPAGW 83

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A Length = 106

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 9/79 (11%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEW--YKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
          V+     VT  C+    P     +   ++         D                 V   
Sbjct: 19 VIPLGSHVTFVCRG---PVGVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSV--- 72

Query: 60 KKEQDGGVYWCLARNSVGT 78
            E + G Y C+       
Sbjct: 73 -SEGNAGPYRCIYYKPPKW 90

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 14/97 (14%)

Query: 7   EPVTLNCKAEGKPE--PTIEWYKDG------ELVETSKS--DAKSQRVIL---PTGSLFF 53
           + +T+ C+            W K+        LV +SK    A + R  +   P    F 
Sbjct: 26  QTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFT 85

Query: 54  LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           + +   ++E D G YWC        +VS++    + V
Sbjct: 86  VTMTDLREE-DSGHYWCRIYRPSDNSVSKSVRFYLVV 121

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 11/83 (13%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           + +A N    L+C  E     T  W         +   +       P   LF   +    
Sbjct: 510 VSLAPNSRYYLSCPMES-RHATYSWRHKE-----NVEQSCEPGHQSPNCILFIENL---- 559

Query: 61  KEQDGGVYWCLAR-NSVGTAVSR 82
             Q  G Y+C A+  S       
Sbjct: 560 TAQQYGHYFCEAQEGSYFREAQH 582

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 2   VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           VV     VTL C ++          K+GE       +++       + ++F +  V    
Sbjct: 111 VVNSGGNVTLQCDSQVAF-DGFILCKEGEDEHPQCLNSQ-PHARGSSRAIFSVGPV---S 165

Query: 62  EQDGGVYWCLARNS 75
                 Y C A +S
Sbjct: 166 PSRRWWYRCYAYDS 179

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          V+ +  PVTL C+   + +     Y++ +   T+    +  + ++  G      +     
Sbjct: 15 VITQGSPVTLRCQGGQETQ-EYRLYREKK---TAPWITRIPQELVKKGQFPIPSI----T 66

Query: 62 EQDGGVYWCLARNS 75
           +  G Y C   + 
Sbjct: 67 WEHTGRYRCYYGSD 80

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens} Length = 110

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 7   EPVTLNCKAEGK-PEPTIEWYKDGE------LVETSKS-DAKSQRVIL---PTGSLFFLR 55
             +++ C  E +       W +  +      +VET  S   ++ RV +   P    F + 
Sbjct: 12  GSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVT 71

Query: 56  VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF 93
           + +  +E D G YWC   ++       +  ++V V +F
Sbjct: 72  LENLTEE-DAGTYWC-GVDTPWLQDFHDPVVEVEVSVF 107

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 18/96 (18%), Positives = 25/96 (26%), Gaps = 10/96 (10%)

Query: 3   VAKNEPVTLNCKAEG---KPEPTIEWYKDGEL----VETSKSDAKSQRVILPTGS---LF 52
                P  L C            +EW   G       +       S       GS     
Sbjct: 305 APGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSG 364

Query: 53  FLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
            L+      EQ G  Y C   +    A  R+A + +
Sbjct: 365 HLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTL 400

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 35.7 bits (82), Expect = 8e-04
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 1   MVVAKNEPVTLNCKA-EGKPEPTIEWYK--DGELVETSKSDAK------SQRVIL--PTG 49
           M V     VTLN      +    + W+   D ++VE     +K        RV L   +G
Sbjct: 14  MTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSG 73

Query: 50  SLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           +L+  +V    +++D   Y        G        LQV
Sbjct: 74  ALYISKV----QKEDNSTYIMRVLKKTGNEQEWKIKLQV 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.73
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.68
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.62
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.61
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.61
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.61
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.6
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.6
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.59
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.59
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.59
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.57
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.57
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.56
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.56
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.56
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.55
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.54
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.53
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.53
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.53
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.53
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.52
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.52
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.52
1he7_A	126	High affinity nerve growth factor receptor; transf	99.51
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.51
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.5
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.49
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.49
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.48
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.48
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.47
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.45
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.43
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.43
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.42
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.42
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.42
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.42
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.42
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.42
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.42
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.42
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.41
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.41
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.41
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.4
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.4
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.4
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.39
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.39
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.38
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.38
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.37
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.36
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.36
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.36
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.36
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.36
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.36
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.35
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.35
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.34
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.34
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.34
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.33
2ens_A	96	Advanced glycosylation END product-specific recept	99.33
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.33
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.33
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.33
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.33
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.33
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.32
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.32
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.31
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.31
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.3
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.3
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.3
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.3
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.3
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.3
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.3
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.29
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.29
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.29
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.29
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.29
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.29
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.29
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.28
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.28
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.28
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.28
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.28
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.28
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.28
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.28
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.27
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.27
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.26
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.26
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.26
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.26
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.26
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.26
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.26
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.25
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.25
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.24
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.24
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.24
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.24
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.24
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.24
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.23
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.23
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.23
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.23
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.22
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.22
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.22
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.21
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.21
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.21
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.2
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.2
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.2
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.2
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.2
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.2
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.19
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.19
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.18
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.18
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.18
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.18
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.17
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.17
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	99.17
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.16
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.16
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.16
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.16
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.15
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.15
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.15
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.14
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.14
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.14
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.14
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.14
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.13
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.13
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.12
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.12
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.12
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.11
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.11
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.1
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.1
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.1
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.08
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.08
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.08
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.07
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.06
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.06
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.06
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.06
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.05
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.03
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.03
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.03
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.03
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.02
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.02
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.02
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.01
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.01
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.01
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.0
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.0
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.0
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.0
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.99
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.98
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.98
3khq_A	133	B-cell antigen receptor complex-associated protei	98.98
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.97
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.97
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.97
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.96
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.96
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.96
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.96
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.96
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.95
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.95
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.95
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.94
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.94
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.94
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.94
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.94
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.93
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.93
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.93
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.93
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.92
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.92
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.92
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.92
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.91
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.91
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.91
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.9
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.9
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.9
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.89
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.89
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.89
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.89
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.89
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.89
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.88
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.88
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.88
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.88
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.88
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.87
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.87
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.86
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.86
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.85
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.85
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.85
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.85
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.85
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.85
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.84
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.84
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.84
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.84
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.84
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.84
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.84
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.84
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.84
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.83
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.83
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.83
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.83
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.83
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.82
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.82
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.82
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.82
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.81
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.81
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.8
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.8
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.8
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.8
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.79
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.79
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.79
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.79
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.79
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.78
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.78
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.78
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.78
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.78
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.78
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.78
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.77
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.77
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.77
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.77
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.76
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.76
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.76
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.76
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.76
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.75
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.75
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.75
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.74
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.74
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.74
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.73
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.73
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.73
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.73
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.73
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.73
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.73
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.72
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.72
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.72
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.72
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.72
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.72
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.72
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.72
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.71
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.71
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.71
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.71
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.7
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.69
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.69
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.69
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.69
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.68
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.68
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.68
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.68
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.68
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.68
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.68
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.68
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.67
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.67
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.67
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.67
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.67
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.66
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.66
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.66
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.66
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.66
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.65
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.65
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.65
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.65
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.65
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.65
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.65
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.64
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.64
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.64
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.64
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.64
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.64
1xt5_A	135	Variable region-containing chitin-binding protein	98.64
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.64
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.63
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.63
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.63
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.62
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.62
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.62
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.62
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.61
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.61
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.61
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.6
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.6
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.6
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.6
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.58
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.58
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.58
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.58
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.58
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.58
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.0
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.58
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.58
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.57
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.57
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.56
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.56
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.55
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.55
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.55
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.55
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.55
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.54
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.54
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.54
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.54
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.54
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.53
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.53
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.53
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.52
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.52
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.52
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	98.52
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.52
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.52
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.51
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.51
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.51
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.51
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.5
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.5
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.5
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.5
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.49
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.48
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.48
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.48
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	98.47
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.47
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.47
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	98.47
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	98.47
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.47
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	98.46
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.46
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.46
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.45
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.45
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.45
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.45
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.44
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.44
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.44
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.44
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	98.44
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.44
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.44
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.44
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.43
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.43
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.43
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.43
3b9v_A	120	Heavy chain variable domain; antibody engineering,	98.43
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.42
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	98.41
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.41
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	98.41
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.41
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.41
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.41
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	98.41
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.4
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	98.4
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.38
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.38
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.38
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.37
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	98.37
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.37
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	98.37
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	98.36
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.35
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.35
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	98.35
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.35
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	98.35
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	98.34
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.34
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	98.34
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	98.34
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.33
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.33
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.33
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.32
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	98.32
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	98.32
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.32

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.73  E-value=9.5e-17  Score=88.62  Aligned_cols=84  Identities=27%  Similarity=0.431  Sum_probs=63.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|+|..+...     .+......+.. ....|..++.+|.|.|.|.+.|..|.. +
T Consensus        24 ~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~   96 (107)
T 3knb_B           24 RVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-----ERLSFPADGAE-HGLLLTAALPTDAGVYVCRARNAAGEA-Y   96 (107)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-----SSEECCEETTE-EEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCcEEEEEEEEEecCCEEEEEECcccccce-----eeEEEeecCce-EEEEEecCChhhCEEEEEEEEECCCEE-E
Confidence            4678999999999999999999999999987643     12222222222 233567889999999999999999987 5


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|..+|
T Consensus        97 ~~~~l~V~~pP  107 (107)
T 3knb_B           97 AAAAVTVLEPP  107 (107)
T ss_dssp             EEEEEEEEC--
T ss_pred             EEEEEEEEcCC
Confidence            67888887654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.68  E-value=7e-16  Score=84.11  Aligned_cols=83  Identities=22%  Similarity=0.450  Sum_probs=62.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....   ..+......... ....|.+++..|.|.|.|.+.|..|.. +
T Consensus        16 ~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~---~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~   90 (100)
T 3knb_A           16 SIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQE---QGRFHIENTDDL-TTLIIMDVQKQDGGLYTLSLGNEFGSD-S   90 (100)
T ss_dssp             EEETTSEEEEEEEEEEESCCEEEEEETTEECCTTG---GGTEEEEECSSE-EEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCeEEEEEEEEEecCCEEEEEECceEeeeec---cceeeeecccce-EEEEEcCCCccCCEEEEEEEEECCCEE-E
Confidence            46789999999999999999999999999876421   122222333332 234567889999999999999999987 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus        91 ~~~~l~V~   98 (100)
T 3knb_A           91 ATVNIHIR   98 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            67777764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=6.1e-15  Score=81.90  Aligned_cols=86  Identities=20%  Similarity=0.180  Sum_probs=64.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...     .......... .....|..++..|.|.|.|.+.|..|.. .
T Consensus        18 ~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-----~~~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~   90 (114)
T 2cqv_A           18 KVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-----EHMKVENSEN-GSKLTILAARQEHCGCYTLLVENKLGSR-Q   90 (114)
T ss_dssp             EEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS-----SSEEEEECSS-EEEEEETTCCTTTCEEEEEEEECSSCEE-E
T ss_pred             EEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCC-----CCEEEEEcCC-EEEEEECCCChhcCEEEEEEEEECCCcE-E
Confidence            4678999999999999999999999999876532     1222222222 2234568889999999999999999977 5


Q ss_pred             eeEEEEEEeeeee
Q psy8666          82 RNATLQVAVVIFF   94 (124)
Q Consensus        82 ~~~~l~v~~~~~~   94 (124)
                      ..+.|.|...|..
T Consensus        91 ~~~~l~V~~~p~~  103 (114)
T 2cqv_A           91 AQVNLTVVDKPDP  103 (114)
T ss_dssp             CCEEEEEECSCSC
T ss_pred             EEEEEEEECCCCC
Confidence            6888888776643

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=1.1e-14  Score=81.34  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=62.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...      ......... .....|..++..|.|.|.|.+.|..|.. +
T Consensus        35 ~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~------~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~  106 (118)
T 2e7c_A           35 IRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS------RVHVRTSDF-DTVFFVRQAARSDSGEYELSVQIENMKD-T  106 (118)
T ss_dssp             EEESSSCEEEEEEEEEESCCEEEEEETTEECCCS------SCEEEECSS-EEEEEESSCCTTTCEEEEEEEECSSCEE-C
T ss_pred             EEECCCEEEEEEEEccCCCCEEEEEECCEECCCC------cEEEEECCC-eEEEEECCCChhcCEEEEEEEEeCCCeE-E
Confidence            4678999999999999999999999999887521      111111222 2223567789999999999999999976 5


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|...|
T Consensus       107 ~~~~l~V~~~P  117 (118)
T 2e7c_A          107 ATIRIRVVEKA  117 (118)
T ss_dssp             CEEEEEEECCC
T ss_pred             EEEEEEEEcCC
Confidence            67788876654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.61  E-value=3.6e-14  Score=77.30  Aligned_cols=83  Identities=24%  Similarity=0.336  Sum_probs=62.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...     ........... ....|..++..|.|.|.|.+.|..|.. +
T Consensus        19 ~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-----~~~~~~~~~~~-~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~   91 (103)
T 3qp3_A           19 RVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES-----SKIHYTNTSGV-LTLEILDCHTDDSGTYRAVCTNYKGEA-S   91 (103)
T ss_dssp             EEETTCCEEEEEEEEEESCCEEEEEETTEECCCC-----SSEEEEEETTE-EEEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCeEEEEEEEEecCCCEEEEEECCEECCCC-----CCEEEEECCCE-EEEEEcCCCcccCEEEEEEEEeCCCcE-E
Confidence            4678999999999999999999999999887642     12222222222 223467779999999999999999987 5


Q ss_pred             eeEEEEEEee
Q psy8666          82 RNATLQVAVV   91 (124)
Q Consensus        82 ~~~~l~v~~~   91 (124)
                      ..+.|.|...
T Consensus        92 ~~~~l~V~~~  101 (103)
T 3qp3_A           92 DYATLDVTGG  101 (103)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEECC
Confidence            6777777543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=2.1e-14  Score=77.68  Aligned_cols=82  Identities=27%  Similarity=0.400  Sum_probs=59.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+....    .......... .....|..++.+|.|.|.|.+.|..|.. .
T Consensus        16 ~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~----~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~   89 (99)
T 1g1c_A           16 TVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD----RIYWYWPEDN-VCELVIRDVTGEDSASIMVKAINIAGET-S   89 (99)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS----SEEEEEEETT-EEEEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCC----CEEEEEcCCC-EEEEEECCCCcCCCEEEEEEEEECCCcE-E
Confidence            46789999999999999999999999998876321    1111111122 1223467779999999999999999887 4


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus        90 ~~~~l~V~   97 (99)
T 1g1c_A           90 SHAFLLVQ   97 (99)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            56666664

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.60  E-value=1.8e-14  Score=78.08  Aligned_cols=83  Identities=24%  Similarity=0.515  Sum_probs=61.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+....   .........+ . ....|..++..|.|.|.|.+.|..|.. +
T Consensus        16 ~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~---~~~~~~~~~~-~-~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~   89 (100)
T 2kdg_A           16 SIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDD---LHKMIVSEKG-L-HSLIFEVVRASDAGAYACVAKNRAGEA-T   89 (100)
T ss_dssp             EEETTCCEEEEEECEEESCCEEEEEETTEEECCCS---SSCEEEETTT-E-EEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCC---cEEEEEcCCC-e-EEEEECCCCcccCEEEEEEEEcCCCeE-E
Confidence            46789999999999999999999999998876431   1111122222 1 223467789999999999999999886 5


Q ss_pred             eeEEEEEEe
Q psy8666          82 RNATLQVAV   90 (124)
Q Consensus        82 ~~~~l~v~~   90 (124)
                      ..+.|.|..
T Consensus        90 ~~~~l~V~~   98 (100)
T 2kdg_A           90 FTVQLDVLA   98 (100)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            677777654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.60  E-value=3.9e-14  Score=76.56  Aligned_cols=82  Identities=23%  Similarity=0.444  Sum_probs=60.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+....    ........+.. ....|..++..|.|.|.|.+.|..|.. .
T Consensus        16 ~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~----~~~~~~~~~~~-~~L~i~~~~~~D~G~Y~C~a~N~~g~~-~   89 (99)
T 1u2h_A           16 SVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQ----RRFAEEAEGGL-CRLRILAAERGDAGFYTCKAVNEYGAR-Q   89 (99)
T ss_dssp             EEETTCCEEEEEEEEEESCCEEEEEETTEECCCBT----TEEEEECGGGE-EEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCC----CEEEEECCCCE-EEEEEccCCcCCCEEEEEEEEECCCce-e
Confidence            46789999999999999999999999998775321    12222222222 234567789999999999999999887 4


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus        90 ~~~~l~V~   97 (99)
T 1u2h_A           90 CEARLEVR   97 (99)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56666664

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.59  E-value=2.2e-14  Score=80.04  Aligned_cols=87  Identities=21%  Similarity=0.358  Sum_probs=62.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...    .................|..++..|.|.|.|.+.|..|.. .
T Consensus        26 ~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~  100 (116)
T 2kkq_A           26 KVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN----TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVT-T  100 (116)
T ss_dssp             EEETTEEEEEEEEBCCBSCCEEEEEETTEECCCC----BTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCcEEEEEEEeccCCCEEEEEECCEECcCC----CCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeE-E
Confidence            4678999999999999999999999999876532    1122222222111122344459999999999999999887 5


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..+|.
T Consensus       101 ~~~~l~V~~~p~  112 (116)
T 2kkq_A          101 CNTRLDVTARPN  112 (116)
T ss_dssp             EEEEEEEECCSC
T ss_pred             EEEEEEEeCCCC
Confidence            678888877654

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.59  E-value=5.8e-14  Score=81.92  Aligned_cols=88  Identities=27%  Similarity=0.333  Sum_probs=63.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...     ................|..++..|.|.|.|.+.|..|.. .
T Consensus        52 ~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~  125 (154)
T 1fhg_A           52 EVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-----RHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA-T  125 (154)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEETTEECCCS-----SSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCeEEEEEEEEEecCCEEEEEECCEECCCC-----CcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeE-E
Confidence            4678999999999999999999999999877632     122222111112334567889999999999999999987 5


Q ss_pred             eeEEEEEEeeeeee
Q psy8666          82 RNATLQVAVVIFFI   95 (124)
Q Consensus        82 ~~~~l~v~~~~~~~   95 (124)
                      ..+.|.|..+|...
T Consensus       126 ~~~~l~V~~~p~~~  139 (154)
T 1fhg_A          126 CTAELLVETMGKEG  139 (154)
T ss_dssp             EEEEEEEECC----
T ss_pred             EEEEEEEeCcCcCC
Confidence            67888888776544

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.57  E-value=4.3e-14  Score=77.28  Aligned_cols=87  Identities=14%  Similarity=0.258  Sum_probs=60.7

Q ss_pred             cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeE
Q psy8666           5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNA   84 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   84 (124)
                      .+..+.+.|.+.|.|.|.++|+|+|..+..... ..................|..++.+|.|.|.|.+.|..|.. ...+
T Consensus        15 ~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~   92 (103)
T 1wwb_X           15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKY-ICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQI   92 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSS-EEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEE
T ss_pred             ECcEEEEEEEEEEeCCCEEEEEECCEECCCCCc-EeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcE-eEEE
Confidence            356788999999999999999999998764310 00011111122222334567779999999999999999988 5677


Q ss_pred             EEEEEeeee
Q psy8666          85 TLQVAVVIF   93 (124)
Q Consensus        85 ~l~v~~~~~   93 (124)
                      .|.|...|.
T Consensus        93 ~l~V~~~P~  101 (103)
T 1wwb_X           93 SAHFMGWPG  101 (103)
T ss_dssp             EECCSCCCC
T ss_pred             EEEECCCCC
Confidence            887766653

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.8e-14  Score=79.51  Aligned_cols=87  Identities=26%  Similarity=0.399  Sum_probs=64.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+....    ................|..++..|.|.|.|.+.|..|.. +
T Consensus        19 ~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~   93 (110)
T 2dm2_A           19 KIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKS----DHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRI-S   93 (110)
T ss_dssp             EEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTC----SSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCE-E
T ss_pred             EEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCC----CeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeE-E
Confidence            46789999999999999999999999998765321    122222221222334567889999999999999999987 5


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..++.
T Consensus        94 ~~~~l~V~~~~~  105 (110)
T 2dm2_A           94 CTGRLMVQAVNS  105 (110)
T ss_dssp             ECCCEEEECCSC
T ss_pred             EEEEEEEECCCC
Confidence            677888877654

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=2.4e-14  Score=77.67  Aligned_cols=81  Identities=32%  Similarity=0.546  Sum_probs=61.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...    .........+.+.    |..++..|.|.|.|.+.|..|.. .
T Consensus        19 ~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~----~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~a~n~~g~~-~   89 (100)
T 2edj_A           19 TLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR----DPRATIQEQGTLQ----IKNLRISDTGTYTCVATSSSGET-S   89 (100)
T ss_dssp             EEESSSEEEECCEEECSSCCEEEEEESSSEESSS----CSSCEECTTCCEE----EESCCTTTCCEEEEEEECSSCCC-B
T ss_pred             EEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCC----CCCEEEcCCCEEE----EccCCcccCEEEEEEEEcCCCCE-E
Confidence            4678999999999999999999999999876522    1222233445543    45559999999999999999887 5


Q ss_pred             eeEEEEEEee
Q psy8666          82 RNATLQVAVV   91 (124)
Q Consensus        82 ~~~~l~v~~~   91 (124)
                      ..+.|.|..+
T Consensus        90 ~~~~l~V~~~   99 (100)
T 2edj_A           90 WSAVLDVTES   99 (100)
T ss_dssp             CCEEEEEESC
T ss_pred             EEEEEEEecC
Confidence            6777777654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.56  E-value=3.7e-14  Score=79.02  Aligned_cols=91  Identities=60%  Similarity=1.029  Sum_probs=63.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEE-EcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRV-VHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|++..+...............++.+.+..+ +..++..|.|.|.|.+.|..|...
T Consensus        20 ~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~   99 (117)
T 2v9t_A           20 IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV   99 (117)
T ss_dssp             EECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEE
T ss_pred             EEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceE
Confidence            4678999999999999999999999999887643211112233344444433221 124578999999999999999987


Q ss_pred             eeeEEEEEEeee
Q psy8666          81 SRNATLQVAVVI   92 (124)
Q Consensus        81 ~~~~~l~v~~~~   92 (124)
                      +..+.|.+..+.
T Consensus       100 s~~~~l~~~~~~  111 (117)
T 2v9t_A          100 SHDASLEVAAAA  111 (117)
T ss_dssp             CCCEEEEEC---
T ss_pred             eeeEEEEhhhhh
Confidence            778888876654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.56  E-value=2.3e-13  Score=73.46  Aligned_cols=81  Identities=27%  Similarity=0.526  Sum_probs=60.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...     ........... ....|..++..|.|.|.|.+.|..|.. +
T Consensus        17 ~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-----~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~   89 (99)
T 3puc_A           17 TVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG-----GKYKLSEDKGG-FFLEIHKTDTSDSGLYTCTVKNSAGSV-S   89 (99)
T ss_dssp             EEESSSCEEEEEEEEEESCCEEEEEETTEECCSS-----SSEEEEEETTE-EEEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCcEEEEEEEEecCCCEEEEEECCEECcCC-----CCEEEEEeCCE-EEEEECCCCcccCEEEEEEEEeCCCcE-e
Confidence            4678999999999999999999999999877532     12222222222 223457779999999999999999887 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus        90 ~~~~l~V~   97 (99)
T 3puc_A           90 SSCKLTIK   97 (99)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56676664

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.55  E-value=4.2e-14  Score=75.75  Aligned_cols=78  Identities=18%  Similarity=0.181  Sum_probs=57.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--ELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|++  ..+...     ... ... ... ....|..++..|.|.|.|.+.|..|..
T Consensus        13 ~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~-----~~~-~~~-~~~-~~L~i~~~~~~D~G~Y~C~a~N~~G~~   84 (93)
T 1wit_A           13 KIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE-----LLV-DAK-SST-TSIFFPSAKRADSGNYKLKVKNELGED   84 (93)
T ss_dssp             EECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT-----SEE-EEE-TTE-EEEECTTBCGGGCEEEEEEEEETTEEE
T ss_pred             EEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc-----EEE-Eec-CCE-EEEEECCCChhcCEEEEEEEEcCCCeE
Confidence            4678999999999999999999999999  665421     111 111 111 234567889999999999999999976


Q ss_pred             eeeeEEEEE
Q psy8666          80 VSRNATLQV   88 (124)
Q Consensus        80 ~~~~~~l~v   88 (124)
                       +..+.|.|
T Consensus        85 -~~~~~l~V   92 (93)
T 1wit_A           85 -EAIFEVIV   92 (93)
T ss_dssp             -EEEEEEEE
T ss_pred             -EEEEEEEE
Confidence             55666654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.1e-13  Score=75.38  Aligned_cols=80  Identities=19%  Similarity=0.269  Sum_probs=59.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+  .|.|.+.|+|+|..+...     ........+.. ....|.+++.+|.|.|.|.+.|.  .. +
T Consensus        18 ~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~-----~r~~i~~~~~~-~~L~I~~v~~~D~G~Y~C~a~N~--~~-~   86 (100)
T 2yuz_A           18 TVNLGKEICLKCEI--SENIPGKWTKNGLPVQES-----DRLKVVQKGRI-HKLVIANALTEDEGDYVFAPDAY--NV-T   86 (100)
T ss_dssp             EEETTSCCCEEEEC--SSCCCEEEEETTEECCCC-----SSEEEEECSSE-EEEEESSCCGGGCSEEEEEESSS--CC-C
T ss_pred             EEcCCCCEEEEEEe--CCCCeEEEEECCEECCCC-----CcEEEEEeCCE-EEEEECCCChhhCEEEEEEEcCC--Ce-e
Confidence            46789999999999  788999999999987632     22223333333 23456888999999999999997  33 4


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|..+|
T Consensus        87 ~~a~L~V~~~P   97 (100)
T 2yuz_A           87 LPAKVHVISGP   97 (100)
T ss_dssp             EEEEEEEECCS
T ss_pred             EEEEEEEeCCC
Confidence            57788887765

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.53  E-value=1.1e-13  Score=73.05  Aligned_cols=78  Identities=26%  Similarity=0.431  Sum_probs=55.3

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      |.+.+|+.+.|.|.+.+ |.|.+.|+|+|..+...     ........+... ...|..++..|.|.|.|.+.|.     
T Consensus         6 v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~-----~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~a~n~-----   73 (84)
T 2lu7_A            6 VRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQ-----GRVQLEQAGARQ-VLRVQGARSGDAGEYLCDAPQD-----   73 (84)
T ss_dssp             EEECTTSCEEEECCCSC-CSTTCEEEETTEECCCC-----SSEEEEECSSCE-EEEESSCSSTTCEEEEEECTTT-----
T ss_pred             EEEecCCCEEEEEEECC-CCcEEEEEECCEEcccc-----ccEEEeecCCeE-EEEecCCCCcccEEEEEEECCE-----
Confidence            35778999999999866 88899999999988643     222233333322 2356888999999999988663     


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus        74 ~~~a~l~V~e   83 (84)
T 2lu7_A           74 SRIFLVSVEE   83 (84)
T ss_dssp             CEEEEEEECC
T ss_pred             EEEEEEEEEC
Confidence            3456666643

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.53  E-value=4.8e-13  Score=72.10  Aligned_cols=81  Identities=26%  Similarity=0.336  Sum_probs=59.0

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+. |.|.+.|+|++..+...     .......... .....|..++..|.|.|.|.+.|..|.. 
T Consensus        12 ~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-   84 (97)
T 2bk8_A           12 VGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS-----EKYEITYEDG-VAILYVKDITKLDDGTYRCKVVNDYGED-   84 (97)
T ss_dssp             EECTTCCEEEEEEEESCCTTCEEEEEETTEECCSS-----SSEEEEEETT-EEEEEECSCCGGGCEEEEEEEECSSCEE-
T ss_pred             EEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCC-----CCEEEEEcCC-eEEEEEecCChhhCeEEEEEEECCCCeE-
Confidence            46789999999999997 89999999999876532     1222211222 1233467779999999999999999887 


Q ss_pred             eeeEEEEEE
Q psy8666          81 SRNATLQVA   89 (124)
Q Consensus        81 ~~~~~l~v~   89 (124)
                      ...+.|.|.
T Consensus        85 ~~~~~l~V~   93 (97)
T 2bk8_A           85 SSYAELFVK   93 (97)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEEEEE
Confidence            446666653

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=9.8e-15  Score=80.46  Aligned_cols=86  Identities=24%  Similarity=0.499  Sum_probs=63.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+....    .......... .....|..++.+|.|.|.|.+.|..|.. +
T Consensus        20 ~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~----~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~   93 (110)
T 2dm3_A           20 TVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS----AHKMLVRENG-VHSLIIEPVTSRDAGIYTCIATNRAGQN-S   93 (110)
T ss_dssp             EEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCS----SEEEEECTTS-CEEEEESSCCGGGCSBBCEEEECSSCEE-E
T ss_pred             EEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCC----ceEEEEecCC-eEEEEEeeCCcccCEEEEEEEECCCCEE-E
Confidence            46789999999999999999999999987765321    1111111121 1223467779999999999999999886 6


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..+|.
T Consensus        94 ~~~~l~V~~~p~  105 (110)
T 2dm3_A           94 FSLELVVAAKES  105 (110)
T ss_dssp             ECCEEEEECCCC
T ss_pred             EEEEEEEeCCCC
Confidence            678888877654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.52  E-value=6e-13  Score=75.16  Aligned_cols=91  Identities=22%  Similarity=0.218  Sum_probs=60.6

Q ss_pred             CEEecCCCEEEEEeeecc---CCCeEEEEeCCEEeeccCCCCCceEE--Ecc-CCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           1 MVVAKNEPVTLNCKAEGK---PEPTIEWYKDGELVETSKSDAKSQRV--ILP-TGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~---p~p~v~w~k~g~~~~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      +.+.+|+.+.|.|.+.+.   |.|.+.|||++...............  ... .........|.++...|.|.|.|.+.|
T Consensus        17 v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn   96 (126)
T 2dav_A           17 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTY   96 (126)
T ss_dssp             CEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEEC
T ss_pred             eEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEe
Confidence            457899999999998764   89999999974211000000001111  111 111224445688899999999999999


Q ss_pred             CCccceeeeEEEEEEeee
Q psy8666          75 SVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        75 ~~~~~~~~~~~l~v~~~~   92 (124)
                      ..+.. ++.+.|.|...|
T Consensus        97 ~~g~~-~~~~~L~V~~~~  113 (126)
T 2dav_A           97 KDKFD-SCSFDLEVHEST  113 (126)
T ss_dssp             SSCEE-EECCEEEEECCC
T ss_pred             CCCcE-EEEEEEEEEecC
Confidence            98887 778999998833

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.52  E-value=6.1e-14  Score=76.94  Aligned_cols=83  Identities=24%  Similarity=0.441  Sum_probs=53.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+....    ..........+    .|..++.+|.|.|.|.+.|..|.. .
T Consensus        21 ~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~L----~i~~v~~~D~G~Y~C~a~n~~g~~-~   91 (108)
T 3kvq_A           21 TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS----GIVLKDGNRNL----TIRRVRKEDEGLYTCQACSVLGCA-K   91 (108)
T ss_dssp             EEETTCCEEEECBCC----CCEEEEESSSBCCCBT----TEEEETTTTEE----EECSCCGGGCEEEEEEEC----CE-E
T ss_pred             EEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCC----CeEEeCCCcEE----EEeecCcccCEEEEEEEEeCCCce-E
Confidence            46789999999999999999999999987765321    11122223333    356669999999999999999887 5


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..++.
T Consensus        92 ~~~~l~V~~~~~  103 (108)
T 3kvq_A           92 VEAFFIIEGAQE  103 (108)
T ss_dssp             EEEEEEEEC---
T ss_pred             EEEEEEEeCCCc
Confidence            678888877654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.51  E-value=1.7e-13  Score=77.35  Aligned_cols=84  Identities=18%  Similarity=0.241  Sum_probs=59.8

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEcc---CC-cEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILP---TG-SLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..+.|.|.+.|.|.|.++|+|+|..+....+   .......   .. .......|..+...|.|.|.|.|.|..|.. .
T Consensus        15 ~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~   90 (126)
T 1he7_A           15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF---IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-S   90 (126)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEETTEECCCCSS---EEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE-E
T ss_pred             CccEEEEEEEeeeCCCeEEEEECCEECCCCCc---eeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeE-E
Confidence            45688999999999999999999998874311   1111111   11 112234456778999999999999999988 6


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|...|.
T Consensus        91 ~t~~l~v~~~P~  102 (126)
T 1he7_A           91 ASIMAAFMDNPF  102 (126)
T ss_dssp             EEEEECCCSCTT
T ss_pred             EEEEEEEEcCCC
Confidence            677787776664

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.51  E-value=2.8e-13  Score=75.92  Aligned_cols=95  Identities=17%  Similarity=0.207  Sum_probs=62.0

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCCEEeeccC--CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDGELVETSK--SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .+..|+.+.|.|.+.+.  |.+.+.|++++..+....  ....................|.+++.+|.|.|.|.+.|..|
T Consensus        19 ~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g   98 (122)
T 3s35_X           19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM   98 (122)
T ss_dssp             EEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             EEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCC
Confidence            56789999999999884  456789999886432100  00000111100001223345678899999999999999998


Q ss_pred             cceeeeEEEEEEeeeeeeee
Q psy8666          78 TAVSRNATLQVAVVIFFISF   97 (124)
Q Consensus        78 ~~~~~~~~l~v~~~~~~~~~   97 (124)
                      .. ...+.|.|..+|.+...
T Consensus        99 ~~-~~~~~l~V~~~p~i~~~  117 (122)
T 3s35_X           99 TK-KNSTFVRVHEKPFVAFG  117 (122)
T ss_dssp             EE-EEEEEEEEEEEECC---
T ss_pred             ce-EEEEEEEEeccCeEEee
Confidence            87 56888999888876543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=4.5e-14  Score=78.82  Aligned_cols=83  Identities=37%  Similarity=0.524  Sum_probs=62.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...    .........+.+.    |..++.+|.|.|.|.+.|..|.. .
T Consensus        19 ~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~----~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~n~~g~~-~   89 (118)
T 2eo9_A           19 TVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ----DSRIKQLENGVLQ----IRYAKLGDTGRYTCIASTPSGEA-T   89 (118)
T ss_dssp             EEETTCEEEEECBCCCSSCCEEEEEESSSBCCTT----STTEEEEETTEEE----EESCCGGGCCCEEEEEECSSCEE-E
T ss_pred             EEcCCCeEEEEEEEEecCCCEEEEEECCEECcCC----CCeEEEccCCEEE----EccCCcCCCEEEEEEEEcCCCcE-E
Confidence            4678999999999999999999999998876531    1222233444443    45569999999999999999886 5


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..++.
T Consensus        90 ~~~~l~V~~~~~  101 (118)
T 2eo9_A           90 WSAYIEVQEFGV  101 (118)
T ss_dssp             EECCEEEECCSC
T ss_pred             EEEEEEEEeCCC
Confidence            567788776653

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.49  E-value=3.5e-13  Score=72.92  Aligned_cols=81  Identities=27%  Similarity=0.489  Sum_probs=58.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+....... ..........+    .|..++..|.|.|.|.+.|..|.. .
T Consensus        19 ~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~-~~~~~~~~~~L----~i~~v~~~D~G~Y~C~a~N~~g~~-~   92 (100)
T 3caf_A           19 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSL----IMESVVPSDKGNYTCVVENEYGSI-N   92 (100)
T ss_dssp             EECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTT-CCEEEGGGTEE----EECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EecCCCEEEEEEEccccCCCEEEEEECCEEcccccccc-cEEEecCeEEE----EEccCCcCCCEEEEEEEEeCCCEE-E
Confidence            46689999999999999999999999998876432111 11112222233    356679999999999999999886 4


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        93 ~~~~l~V   99 (100)
T 3caf_A           93 HTYHLDV   99 (100)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5555554

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.49  E-value=1.1e-13  Score=73.92  Aligned_cols=74  Identities=20%  Similarity=0.431  Sum_probs=57.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...           ....+    .|..++.+|.|.|.|.+.|..|...+
T Consensus        14 ~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-----------~~~~L----~i~~v~~~d~G~Y~C~a~n~~g~~~s   78 (91)
T 3bfo_A           14 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----------TKKLY----MVPYVDLEHQGTYWCHVYNDRDSQDS   78 (91)
T ss_dssp             EECTTSCEEEECEEECSSCCEEEEEETTEECTTC-----------CSSEE----EESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred             EecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-----------CCCeE----EECCCCHHhCEEEEEEEEcCCCCEEe
Confidence            4678999999999999999999999999876532           11222    35667999999999999999987655


Q ss_pred             eeEEEEEEe
Q psy8666          82 RNATLQVAV   90 (124)
Q Consensus        82 ~~~~l~v~~   90 (124)
                      ..+.|.|..
T Consensus        79 ~~~~l~V~~   87 (91)
T 3bfo_A           79 KKVEIIIDE   87 (91)
T ss_dssp             CCEEEEEC-
T ss_pred             eeEEEEEeh
Confidence            667777643

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.48  E-value=2.4e-12  Score=70.74  Aligned_cols=87  Identities=18%  Similarity=0.233  Sum_probs=57.7

Q ss_pred             EEecCCCEEEEEeeeccCC---CeEEEEeCCEEeeccCCCCCceEE---EccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE---PTIEWYKDGELVETSKSDAKSQRV---ILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~---p~v~w~k~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+..|+.+.|.|.+.+.|.   |.+.|+|++...............   ............|.+++..|.|.|.|.+.|.
T Consensus        15 ~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   94 (108)
T 3cx2_A           15 EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTK   94 (108)
T ss_dssp             EEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecC
Confidence            4778999999999999988   999999987322111000001110   0111112334567888999999999999999


Q ss_pred             CccceeeeEEEEEE
Q psy8666          76 VGTAVSRNATLQVA   89 (124)
Q Consensus        76 ~~~~~~~~~~l~v~   89 (124)
                      .|.. +..+.|.|.
T Consensus        95 ~G~~-~~~~~L~V~  107 (108)
T 3cx2_A           95 DKFD-CSNFNLTVH  107 (108)
T ss_dssp             SCEE-EEEEEEEEE
T ss_pred             CCce-EEEEEEEEe
Confidence            9987 567777764

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=5.1e-14  Score=76.19  Aligned_cols=77  Identities=27%  Similarity=0.517  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...     .....  ..  .....|..++..|.|.|.|.+.|..|.. +
T Consensus        22 ~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~-----~~~~~--~~--~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~   91 (99)
T 2yr3_A           22 AVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA-----RSTCE--AG--VAELHIQDALPEDHGTYTCLAENALGQV-S   91 (99)
T ss_dssp             EECTTCCEEEECEEEEESCCCCEEEESSSBCSSC-----CCEEE--TT--EEEEEECSCCTTCCBCEEEEEECSSCEE-E
T ss_pred             EEeCCCeEEEEEEEeeeCCCeEEEEECCEECccc-----ceEee--CC--eEEEEECCCChhhCEEEEEEEEECCCeE-E
Confidence            4678999999999999999999999998776532     11111  11  1223457779999999999999999876 4


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        92 ~~~~l~V   98 (99)
T 2yr3_A           92 CSAWVTV   98 (99)
T ss_dssp             EECCEEE
T ss_pred             EEEEEEE
Confidence            4555554

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.47  E-value=1.9e-13  Score=73.52  Aligned_cols=75  Identities=20%  Similarity=0.459  Sum_probs=55.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.| |.+.|+|++..+...     .... .....+    .|..++..|.|.|.|.+.|..|.. .
T Consensus        20 ~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~-----~~~~-~~~~~L----~i~~~~~~D~G~Y~C~a~n~~g~~-~   87 (95)
T 2ckn_A           20 LVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVES-----NRTR-ITGEEV----EVRDSIPADSGLYACVTSSPSGSD-T   87 (95)
T ss_dssp             EECTTSCEEEECCEESSC-CEEEEEBTTBCCCCC-----SSEE-ECSSEE----EESSCCGGGSEEEEEEEEETTEEE-E
T ss_pred             EEcCCCeEEEEEECCCCC-CceEEEECCEecCCC-----CCEE-EeCCEE----EECCCChHHCEEEEEEeccCCCcE-E
Confidence            467899999999999887 899999999876532     1222 223333    456779999999999999998876 4


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        88 ~~~~l~V   94 (95)
T 2ckn_A           88 TYFSVNV   94 (95)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5555554

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.45  E-value=1.5e-13  Score=75.51  Aligned_cols=81  Identities=25%  Similarity=0.470  Sum_probs=59.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...     ........... ....|..++..|.|.|.|.+.|..|.. +
T Consensus        25 ~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~   97 (106)
T 1nct_A           25 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS-----ARHQVTTTKYK-STFEISSVQASDEGNYSVVVENSEGKQ-E   97 (106)
T ss_dssp             EESSSSCEECCEEEECSSCCBCCBCSSSSCCTTC-----SSEEEEECSSE-EEEEECCCCSSCCSEEEECCBCSSCBC-C
T ss_pred             EEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCC-----CCEEEEECCCE-EEEEECcCCchhCEEEEEEEEeCCCeE-E
Confidence            4678999999999999999999999998765432     12222222222 233457779999999999999999886 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus        98 ~~~~l~V~  105 (106)
T 1nct_A           98 AEFTLTIQ  105 (106)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            56666653

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.7e-12  Score=72.52  Aligned_cols=90  Identities=21%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             CEEecCCCEEEEEeeecc---CCCeEEEEeCCEEeeccCCCCCceEEEc-cC--CcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           1 MVVAKNEPVTLNCKAEGK---PEPTIEWYKDGELVETSKSDAKSQRVIL-PT--GSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~---p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      +.+.+|+.+.|.|.+.+.   |.|.|.|||++................. ..  ........|.++...|.|.|.|.+.|
T Consensus        22 v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn  101 (118)
T 2edn_A           22 VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKA  101 (118)
T ss_dssp             CEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEEC
T ss_pred             eEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEE
Confidence            467899999999999875   7899999997421111000001111111 11  11234456788899999999999999


Q ss_pred             CCccceeeeEEEEEEee
Q psy8666          75 SVGTAVSRNATLQVAVV   91 (124)
Q Consensus        75 ~~~~~~~~~~~l~v~~~   91 (124)
                      ..|.. ++.+.|.|..+
T Consensus       102 ~~g~~-s~~~~L~V~~~  117 (118)
T 2edn_A          102 KDTCD-SCGFNIDVEAP  117 (118)
T ss_dssp             SSCEE-EEEECCEEECC
T ss_pred             cCCcE-EEEEEEEEEcC
Confidence            99976 78888888763

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.43  E-value=5.7e-13  Score=71.31  Aligned_cols=65  Identities=31%  Similarity=0.562  Sum_probs=47.6

Q ss_pred             ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      ..|+.+.|.|.+.+ |.|.+.|+|+|..+...     ........+... ...|.+++.+|.|.|.|.+.|.
T Consensus        19 ~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~-----~~~~i~~~~~~~-~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           19 ITSECVMLACEVDR-EDAPVRWYKDGQEVEES-----DFVVLENEGPHR-RLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             CTTCCEEEEEECSC-TTSCCEEEETTSCCCCC-----SSCEEEEETTEE-EEEESSCCGGGCSEEEEECSSC
T ss_pred             ECCCcEEEEEEECC-CCcEEEEEECCEEeeee-----eeeeEEecCCeE-EEEeCCCChhhcEEEEEEEcce
Confidence            47999999999865 88899999999887643     122223333332 3456888999999999998774

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.42  E-value=3.4e-12  Score=68.47  Aligned_cols=76  Identities=20%  Similarity=0.239  Sum_probs=53.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+ +.|.+.|+|+|..+...     ........+.. ....|.+++.+|.|.|.|.+.|..     
T Consensus        16 ~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~-----~~~~i~~~g~~-~~L~I~~v~~~D~G~Y~C~a~n~~-----   83 (93)
T 1waa_A           16 EVFVGETAHFEIELSE-PDVHGQWKLKGQPLAAS-----PDCEIIEDGKK-HILILHNCQLGMTGEVSFQAANTK-----   83 (93)
T ss_dssp             EEETTSCEEEEEEESS-SSCCCEEEETTEECCCB-----TTEEEEEETTE-EEEEECSCCGGGCEEEEEEETTEE-----
T ss_pred             EEeCCCCEEEEEEECC-CCCeEEEEECCEECcCC-----CCEEEEEECCE-EEEEECCCChhhCEEEEEEECCCc-----
Confidence            4678999999999976 55789999999987642     12222233332 234567889999999999998742     


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ....|.|.
T Consensus        84 ~sa~L~V~   91 (93)
T 1waa_A           84 SAANLKVK   91 (93)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            34555554

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.42  E-value=4.4e-12  Score=76.74  Aligned_cols=82  Identities=20%  Similarity=0.458  Sum_probs=61.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...     ...... ..+.. ....|..++..|.|.|.|.+.|..|.. 
T Consensus       128 ~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~-----~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~N~~g~~-  200 (212)
T 2r15_A          128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT-----DHCNLKFEAGRT-AYFTINGVSTADSGKYGLVVKNKYGSE-  200 (212)
T ss_dssp             EEETTCCEEEEEEEECSSCCEEEEEETTEEECCC-----SSEEEEEETTTE-EEEEESSCCGGGCEEEEEEEEETTEEE-
T ss_pred             EEccCCeEEEEEEEcCCCCceEEEEECCeECccC-----CCEEEEEcCCCE-EEEEEcCcchHHCeEEEEEEEcCCCcE-
Confidence            3567999999999999999999999999887642     111122 21222 334567789999999999999999887 


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      ...+.|.|..
T Consensus       201 ~~~~~l~V~~  210 (212)
T 2r15_A          201 TSDFTVSVFI  210 (212)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEc
Confidence            5677777654

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.42  E-value=1e-12  Score=70.55  Aligned_cols=78  Identities=27%  Similarity=0.467  Sum_probs=57.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+  .|.+.|+|+|..+...     ... ......+    .|..++.+|.|.|.|.+.|..|.. +
T Consensus        12 ~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~-----~~~-~~~~~~L----~i~~~~~~D~G~Y~C~a~n~~g~~-~   78 (95)
T 4hwu_A           12 VVAPGESLELQCMLKD--AAVISWTKDGVHLGPN-----NRT-VLIGEYL----QIKGATPRDSGLYACTAARTVDSE-T   78 (95)
T ss_dssp             EECTTSCEEEECCCCT--TCEEEEEETTEEECCC-----SSE-EEETTEE----EECSCCGGGCEEEEEEEECSSCEE-E
T ss_pred             EECCCCEEEEEEEeCC--CCEEEEEECCEECCCC-----ceE-EEeCCEE----EECcCCcccCEEEEEEEccCCCcE-E
Confidence            4678999999999876  5799999999887532     111 1223333    356679999999999999999876 5


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|..++
T Consensus        79 ~~~~l~V~~~~   89 (95)
T 4hwu_A           79 WIFMVNVTDAA   89 (95)
T ss_dssp             EEEEEEECCC-
T ss_pred             EEEEEEEeCCc
Confidence            67777776554

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.1e-12  Score=71.56  Aligned_cols=80  Identities=26%  Similarity=0.330  Sum_probs=57.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.| +.|+|++..+...     ........+.. ....|..++.+|.|.|.|.+.|..     
T Consensus        21 ~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~-----~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~-----   88 (104)
T 2e6p_A           21 TFTTSERVVLTCELSRVDFP-ATWYKDGQKVEES-----ELLVVKMDGRK-HRLILPEAKVQDSGEFECRTEGVS-----   88 (104)
T ss_dssp             EEESSSCEECCEECSSTTCC-CEEEETTEECCCB-----TTBEEEEETTE-EEEEESSCCTTTCEEEEEECSSCC-----
T ss_pred             EEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCC-----CCEEEEeCCCE-EEEEECCCChhhCEEEEEEECCce-----
Confidence            46789999999999998988 9999999877632     11122222222 233567889999999999998863     


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..+|.
T Consensus        89 ~~~~l~V~~~P~  100 (104)
T 2e6p_A           89 AFFGVTVQDPSG  100 (104)
T ss_dssp             CCEEEEEECCCC
T ss_pred             EEEEEEEcCCCC
Confidence            256777777664

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.42  E-value=1.2e-11  Score=73.33  Aligned_cols=92  Identities=32%  Similarity=0.534  Sum_probs=67.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEE-EccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|++..+...     .... ............|..++..|.|.|.|.+.+..+...
T Consensus        13 ~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~   87 (182)
T 1rhf_A           13 TVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL-----DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   87 (182)
T ss_dssp             EEETTCCEEEEEEEESCSSCCEEEEETTEECCSS-----EEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             EEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC-----CceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEE
Confidence            4678999999999999899999999999877632     1111 112222223345678899999999999999877655


Q ss_pred             eeeEEEEEEeeeeeeeec
Q psy8666          81 SRNATLQVAVVIFFISFF   98 (124)
Q Consensus        81 ~~~~~l~v~~~~~~~~~~   98 (124)
                      +..+.|.|..+|.+...+
T Consensus        88 ~~~~~l~V~~~p~~~~~~  105 (182)
T 1rhf_A           88 SQPVWLTVEGVPFFTVEP  105 (182)
T ss_dssp             CCCEEEEEECSCEEEECC
T ss_pred             EEEEEEEEecCCeEEecC
Confidence            678888888877665443

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.42  E-value=3.6e-12  Score=69.64  Aligned_cols=89  Identities=15%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCE-EeeccC--CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGE-LVETSK--SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~-~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|++++. .+....  .....+..............|.+++.+|.|.|.|.+.| .+.
T Consensus        17 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~~~   95 (108)
T 3m45_A           17 TVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-MPV   95 (108)
T ss_dssp             EEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-SSC
T ss_pred             EEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-CCC
Confidence            56789999999999998999999999875 222110  00111221111111123345678899999999999999 665


Q ss_pred             ceeeeEEEEEEeee
Q psy8666          79 AVSRNATLQVAVVI   92 (124)
Q Consensus        79 ~~~~~~~l~v~~~~   92 (124)
                      . +..+.|.|..+|
T Consensus        96 ~-~~~~~L~V~~~P  108 (108)
T 3m45_A           96 K-TSKAYLTVLGVP  108 (108)
T ss_dssp             E-EEEEEEEEECCC
T ss_pred             c-EEEEEEEEEcCC
Confidence            5 567777776553

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.42  E-value=7.7e-13  Score=71.39  Aligned_cols=75  Identities=27%  Similarity=0.375  Sum_probs=54.5

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+. +.|.|.+.|+|++......      . .....+.+    .|.+++.+|.|.|.|.+.|..|.. 
T Consensus        21 ~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~------~-~~~~~~~L----~i~~v~~~D~G~Y~C~a~n~~g~~-   88 (98)
T 1gl4_B           21 SVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS------R-AMDFNGIL----TIRNVQPSDAGTYVCTGSNMFAMD-   88 (98)
T ss_dssp             EECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT------T-EEEETTEE----EECSCCGGGCEEEEEEEECSSCEE-
T ss_pred             EEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCc------e-eecCCCEE----EEeCCChhhCEEEEEEecCCCCcc-
Confidence            467899999999998 6899999999975433211      1 12223333    456779999999999999998876 


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      ...+.|.|
T Consensus        89 ~~~~~l~V   96 (98)
T 1gl4_B           89 QGTATLHV   96 (98)
T ss_dssp             EEEEEEEE
T ss_pred             ccEEEEEE
Confidence            45666665

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2.2e-13  Score=73.80  Aligned_cols=78  Identities=21%  Similarity=0.451  Sum_probs=56.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.| |.+.|+|++..+...     ..... ....+    .|..++..|.|.|.|.+.|..|.. .
T Consensus        14 ~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~-----~~~~~-~~~~L----~i~~v~~~D~G~Y~C~a~n~~g~~-~   81 (99)
T 2cr3_A           14 LVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAES-----NRTRI-TGEEV----EVQDSVPADSGLYACVTSSPSGSD-T   81 (99)
T ss_dssp             CBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCC-----SSEEE-CSSEE----EETTCCTTTCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCcEEEEEEecCCC-CeEEEEECCEECCCC-----CcEEE-ECCEE----EEccCCHHHCEEEEEEEEeCCceE-E
Confidence            467899999999998876 799999999766432     12222 22322    457779999999999999998876 5


Q ss_pred             eeEEEEEEee
Q psy8666          82 RNATLQVAVV   91 (124)
Q Consensus        82 ~~~~l~v~~~   91 (124)
                      ..+.|.|...
T Consensus        82 ~~~~l~V~~~   91 (99)
T 2cr3_A           82 TYFSVNVSDA   91 (99)
T ss_dssp             EEEEECBCSC
T ss_pred             EEEEEEEecC
Confidence            5666665543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.41  E-value=7.4e-12  Score=76.08  Aligned_cols=89  Identities=34%  Similarity=0.489  Sum_probs=61.5

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|++++..+......  ........... ....|..++..|.|.|.|.+.|..|...+.
T Consensus       120 ~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~--~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~  196 (212)
T 2yd6_A          120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNN--GRIKQLRSESI-GALQIEQSEESDQGKYECVATNSAGTRYSA  196 (212)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEETTEEC--------CCEEEEEETTE-EEEEECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             EecCCCEEEEEEecCCCCCeEEEEECCccccCcCCC--ceEEEEecCCe-EEEEEcCCCcccCEEEEEEEECCCCccccc
Confidence            557999999999999999999999999887642110  11111111111 233457779999999999999999998788


Q ss_pred             eEEEEEEeeeee
Q psy8666          83 NATLQVAVVIFF   94 (124)
Q Consensus        83 ~~~l~v~~~~~~   94 (124)
                      .+.|.+..++++
T Consensus       197 ~a~l~~~~~~~~  208 (212)
T 2yd6_A          197 PANLYVRGTKHH  208 (212)
T ss_dssp             CEEEEEEC----
T ss_pred             cccEEEEecccc
Confidence            889998877653

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.41  E-value=1.4e-12  Score=77.89  Aligned_cols=82  Identities=33%  Similarity=0.648  Sum_probs=62.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|++++..+...     ........+.+    .|..++..|.|.|.|.+.|..|...+
T Consensus       111 ~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~n~~g~~~s  181 (192)
T 2iep_A          111 KIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN-----SRIAVLESGSL----RIHNVQKEDAGQYRCVAKNSLGTAYS  181 (192)
T ss_dssp             EEETTSCEEECCEEEEESCCEEEEEETTEECCCC-----SSEEECTTSCE----EESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEeCCCcEEEEEEEeccCCceEEEEeCCEEccCC-----CcEEEecCCcE----EEecCChhhCEEEEEEEEcCCCcEEE
Confidence            3567999999999999999999999999877632     22233344444    35666899999999999999988766


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|..+|
T Consensus       182 ~~~~l~V~~pp  192 (192)
T 2iep_A          182 KLVKLEVEVFA  192 (192)
T ss_dssp             CCEEEEEEC--
T ss_pred             EEEEEEEEeCC
Confidence            67888887654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.41  E-value=1.4e-11  Score=80.84  Aligned_cols=94  Identities=26%  Similarity=0.354  Sum_probs=67.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|+  |..+.........+......... ....|.+++.+|.|.|.|.+.|..|..
T Consensus        11 ~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~n~~g~~   89 (389)
T 2jll_A           11 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS-SSLHIKDVKLSDSGRYDCEAASRIGGH   89 (389)
T ss_dssp             EEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSE-EEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred             EEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCc-ceEEEcccChhhCEEEEEEEEeCCCCc
Confidence            356799999999999999999999999  87775321111122222222121 223456779999999999999999887


Q ss_pred             eeeeEEEEEEeeeeeeee
Q psy8666          80 VSRNATLQVAVVIFFISF   97 (124)
Q Consensus        80 ~~~~~~l~v~~~~~~~~~   97 (124)
                       +..+.|.|..+|.+...
T Consensus        90 -~~~~~l~V~~~P~~~~~  106 (389)
T 2jll_A           90 -QKSMYLDIEYAPKFISN  106 (389)
T ss_dssp             -EEEEEEEEEEEEEECCS
T ss_pred             -ceEEEEEEEeCCEEecC
Confidence             67889999888876543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.40  E-value=9.5e-13  Score=79.62  Aligned_cols=87  Identities=34%  Similarity=0.645  Sum_probs=61.8

Q ss_pred             EEecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+ .+.|.|.+.|++++..+....     .......+.+    .|..++.+|.|.|.|.+.|..|...
T Consensus       122 ~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~-----~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~N~~g~~~  192 (212)
T 2v9r_A          122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD-----ERITIRGGKL----MITYTRKSDAGKYVCVGTNMVGERE  192 (212)
T ss_dssp             EEETTSCEEEECBCCCEESCCEEEEEETTEEECTTS-----TTEEEETTEE----EESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCc-----ceEEccCCeE----EEeeCCHhhCeeEEEEEecccCcee
Confidence            35689999999998 889999999999999876421     1112233333    3566689999999999999998875


Q ss_pred             eeeEEEEEEeeeeeeee
Q psy8666          81 SRNATLQVAVVIFFISF   97 (124)
Q Consensus        81 ~~~~~l~v~~~~~~~~~   97 (124)
                      +..+.|.|..+|.+...
T Consensus       193 s~~~~l~V~~~P~~~~~  209 (212)
T 2v9r_A          193 SEVAELTVLERPSFVKA  209 (212)
T ss_dssp             CCCEEEEEEC-------
T ss_pred             cceEEEEEEeCchHhhh
Confidence            65689999888765543

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=7.5e-12  Score=69.09  Aligned_cols=82  Identities=26%  Similarity=0.364  Sum_probs=58.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+. .|.+.+.|+|+|..+...     ........+... ...|..++.+|.|.|.|.+.|    . +
T Consensus        24 ~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~-----~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~a~n----~-~   91 (113)
T 2cpc_A           24 AAVRLERVVLTCELC-RPWAEVRWTKDGEEVVES-----PALLLQKEDTVR-RLVLPAVQLEDSGEYLCEIDD----E-S   91 (113)
T ss_dssp             EEETTCCEEEEEEES-CTTCCCEEEETTEECCCB-----TTBEEEECSSEE-EEEESSCCTTTCEEEEEESSS----C-E
T ss_pred             EEEcCCeEEEEEEec-CCCCeEEEEECCEECccC-----CCEEEEECCCEE-EEEECCCCcccCEEEEEEEec----C-c
Confidence            356799999999985 788999999999877642     122222333222 334678899999999999988    2 4


Q ss_pred             eeEEEEEEeeeeee
Q psy8666          82 RNATLQVAVVIFFI   95 (124)
Q Consensus        82 ~~~~l~v~~~~~~~   95 (124)
                      ..+.|.|..+|.+.
T Consensus        92 ~~~~l~V~~~p~~~  105 (113)
T 2cpc_A           92 ASFTVTVTEPPVRI  105 (113)
T ss_dssp             EEEEEEEECCCCCC
T ss_pred             EEEEEEEecCCchh
Confidence            57788888777543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.40  E-value=3.9e-12  Score=77.38  Aligned_cols=95  Identities=20%  Similarity=0.231  Sum_probs=63.1

Q ss_pred             CEEecCCCEEEEEe---eeccCCCeEEEEeCCEEeeccC-----C-------CCCceEEEccCCcEEEEEEEcCCCccCC
Q psy8666           1 MVVAKNEPVTLNCK---AEGKPEPTIEWYKDGELVETSK-----S-------DAKSQRVILPTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         1 v~~~~G~~~~l~C~---~~~~p~p~v~w~k~g~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~i~~~~~~d~   65 (124)
                      |++..|+.+.|.|.   +.+.|.|.+.|+|+|.......     .       ............. .....|..++.+|.
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN-TFFLVVTAANISHD   81 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETT-EEEEEESSCCGGGC
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCC-EEEEEEccCCHHHC
Confidence            57889999999995   5677899999999764221100     0       0000001111111 22345688899999


Q ss_pred             eEEEEEeEeCCccceeeeEEEEEEeeeeeeee
Q psy8666          66 GVYWCLARNSVGTAVSRNATLQVAVVIFFISF   97 (124)
Q Consensus        66 g~y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~   97 (124)
                      |.|.|.+.|..|.. +..+.|.|..+|.+...
T Consensus        82 G~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~  112 (203)
T 4fa8_A           82 GNYLCRMKLGETEV-TKQEHLSVVKPLTLSVH  112 (203)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCcE-EEEEEEEecCCceeeec
Confidence            99999999998887 56788888887766544

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.39  E-value=2.8e-12  Score=78.11  Aligned_cols=89  Identities=29%  Similarity=0.348  Sum_probs=64.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|+|..+....   ............ ....|..++..|.|.|.|.+.|..|.. .
T Consensus        29 ~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~---~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~  103 (215)
T 3mtr_A           29 YTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSN---YSNIKIYNTPSA-SYLEVTPDSENDFGNYNCTAVNRIGQE-S  103 (215)
T ss_dssp             EECTTCCEEEEEEEEEESCCEEEEEETTEESSCSS---SCSEEEEEETTE-EEEEECCCSGGGCEEEEEEEECSSCEE-E
T ss_pred             EEECCCCEEEEEEEeecCCCEEEEEECCeECCCCC---CccEEEecCCCe-eEEEEecCChhhCeEEEEEEEECCCce-E
Confidence            46689999999999999999999999998776321   011112211111 223457779999999999999999987 5


Q ss_pred             eeEEEEEEeeeeee
Q psy8666          82 RNATLQVAVVIFFI   95 (124)
Q Consensus        82 ~~~~l~v~~~~~~~   95 (124)
                      ..+.|.+..+|..+
T Consensus       104 ~~~~l~v~~~P~~p  117 (215)
T 3mtr_A          104 LEFILVQADTPSSP  117 (215)
T ss_dssp             EEEEEEECCCCCCC
T ss_pred             EEEEEEECCCCCCC
Confidence            67788877665543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.39  E-value=4.9e-12  Score=77.09  Aligned_cols=77  Identities=21%  Similarity=0.349  Sum_probs=57.6

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+. |.|.+.|+|+|..+....     ..   ..........|..++.+|.|.|.|.+.|..|.. 
T Consensus       127 ~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~-----~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-  197 (207)
T 3rbs_A          127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-----KH---DFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-  197 (207)
T ss_dssp             EEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCC-----CC---CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEE-
T ss_pred             EEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCC-----ce---EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEE-
Confidence            35679999999999998 999999999999886421     11   111222334568889999999999999999987 


Q ss_pred             eeeEEEE
Q psy8666          81 SRNATLQ   87 (124)
Q Consensus        81 ~~~~~l~   87 (124)
                      ...+.|.
T Consensus       198 ~~~~~L~  204 (207)
T 3rbs_A          198 KSRLKLV  204 (207)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            4455554

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.38  E-value=1.9e-11  Score=73.17  Aligned_cols=88  Identities=27%  Similarity=0.427  Sum_probs=64.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|++..+....    ..... ...+.. ....|..++..|.|.|.|.+.|..+.. 
T Consensus        15 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~~~n~~g~~-   88 (197)
T 2j8h_A           15 NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG----LKYRIQEFKGGY-HQLIIASVTDDDATVYQVRATNQGGSV-   88 (197)
T ss_dssp             EEETTSCEEEEEEEECSSCCEEEEEETTEECCCCS----SSEEEEEETTTE-EEEEECSCCGGGCSEEEEEEEETTEEE-
T ss_pred             EEcCCCEEEEEEEEeecCCCEEEEEECCEECccCC----CcEEEEEcCCCE-EEEEECcCCHHhCEEEEEEEEECCCce-
Confidence            46789999999999999999999999998776321    11111 112221 233467779999999999999998876 


Q ss_pred             eeeEEEEEEeeeeee
Q psy8666          81 SRNATLQVAVVIFFI   95 (124)
Q Consensus        81 ~~~~~l~v~~~~~~~   95 (124)
                      +..+.|.|..+|.+.
T Consensus        89 ~~~~~l~V~~~p~~~  103 (197)
T 2j8h_A           89 SGTASLEVEVPAKIH  103 (197)
T ss_dssp             EEEEEEEEEEEEEEC
T ss_pred             eEEEEEEEcCCCcCC
Confidence            667888888776553

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=4.1e-12  Score=69.15  Aligned_cols=82  Identities=21%  Similarity=0.380  Sum_probs=55.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+ |.+.+.|+|++..+.....   .++.....+... ...|..++.+|.|.|.|.+.|    . +
T Consensus        18 ~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~---~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~a~n----~-~   87 (103)
T 1x44_A           18 TAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPK---SRYRIRVEGKKH-ILIIEGATKADAAEYSVMTTG----G-Q   87 (103)
T ss_dssp             EEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTT---CSEEEEEETTEE-EEEEEEECTTTCSEEEEEETT----E-E
T ss_pred             EEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCc---eEEEEEEcCCEE-EEEECCCCcccCEEEEEEECC----C-c
Confidence            4678999999999977 7799999999988764310   121222222211 123345599999999999987    2 4


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..+|.
T Consensus        88 ~~~~l~V~~~p~   99 (103)
T 1x44_A           88 SSAKLSVDLKSG   99 (103)
T ss_dssp             EEEEEEEECCCS
T ss_pred             EEEEEEEeCCCC
Confidence            567788877654

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.36  E-value=4.4e-11  Score=71.39  Aligned_cols=87  Identities=28%  Similarity=0.506  Sum_probs=63.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|++..+...     ........+... ...|..++..|.|.|.|.+.|..+.. .
T Consensus        18 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~~~n~~~~~-~   90 (197)
T 3lcy_A           18 TTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS-----RKYKMSSDGRTH-TLTVMTEEQEDEGVYTCIATNEVGEV-E   90 (197)
T ss_dssp             EEETTSEEEEEEEEEEESCCEEEEEETTEEECCC-----SSEEEEESSSEE-EEEEECCSGGGCEEEEEEEECSSCEE-E
T ss_pred             EEeCCCcEEEEEEEecCCCCEEEEEECCEECCCC-----ccEEEEeCCCEE-EEEEecCCccCCEEEEEEEECCCCce-e
Confidence            4678999999999999999999999999887532     222223333222 23346669999999999999988776 5


Q ss_pred             eeEEEEEEeeeeee
Q psy8666          82 RNATLQVAVVIFFI   95 (124)
Q Consensus        82 ~~~~l~v~~~~~~~   95 (124)
                      ....|.|...|.+.
T Consensus        91 ~~~~l~v~~~p~~~  104 (197)
T 3lcy_A           91 TSSKLLLQATPQFH  104 (197)
T ss_dssp             EEEEEEEEEEEEEC
T ss_pred             EEEEEEEEcCCCCC
Confidence            56777777766544

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.3e-12  Score=70.06  Aligned_cols=80  Identities=26%  Similarity=0.440  Sum_probs=57.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+ |.+.+.|+|++..+...     ........+.. ....|..++.+|.|.|.|.+.|.     +
T Consensus        19 ~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~n~-----~   86 (103)
T 2edf_A           19 WVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKS-----QKYDVVCEGTM-AMLVIRGASLKDAGEYTCEVEAS-----K   86 (103)
T ss_dssp             EECTTSCEEECCEESS-SSCCCCEEESSCBCCCS-----SSEEEEEETTE-EEEEESSCCTTTCSEEEEECSSC-----E
T ss_pred             EEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCC-----CCEEEEECCCE-EEEEECCCCcccCEEEEEEEccC-----C
Confidence            4678999999999987 88889999999876532     12222223332 23456788999999999999982     4


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..+|.
T Consensus        87 ~~~~l~V~~~p~   98 (103)
T 2edf_A           87 STASLHVEEKAS   98 (103)
T ss_dssp             EEEEEEECCCSS
T ss_pred             cEEEEEEeCCCC
Confidence            577788776654

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.36  E-value=1.3e-11  Score=68.76  Aligned_cols=83  Identities=20%  Similarity=0.287  Sum_probs=56.7

Q ss_pred             CCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCC-cEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG-SLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         7 ~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      ....+.|.+.|.|.|.+.|+|+|..+....   .......... .......|..++..|.|.|.|.+.|..|.. ...+.
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~   96 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESK---IIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTIN   96 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSS---SEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCC---ceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeE-eeEEE
Confidence            345788999999999999999998876421   1111111111 112233456779999999999999999987 55777


Q ss_pred             EEEEeeee
Q psy8666          86 LQVAVVIF   93 (124)
Q Consensus        86 l~v~~~~~   93 (124)
                      |.|...|.
T Consensus        97 l~v~~~P~  104 (118)
T 1wwc_A           97 GHFLKEPF  104 (118)
T ss_dssp             ECCSCCCC
T ss_pred             EEEccCCC
Confidence            76665553

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.36  E-value=1.7e-11  Score=84.52  Aligned_cols=88  Identities=23%  Similarity=0.361  Sum_probs=66.3

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.|.|.|.+.|+|+|..+...     ........+... ...|..++.+|.|.|.|.+.|..|.. ..
T Consensus       396 ~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~-----~~~~~~~~~~~~-~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~  468 (570)
T 3b43_A          396 TLKGADVHLECELQGTPPFQVSWHKDKRELRSG-----KKYKIMSENFLT-SIHILNVDSADIGEYQCKASNDVGSD-TC  468 (570)
T ss_dssp             ECTTCCEEEEEEEESSSSCCCEEEETTEECCSS-----SSEEEEEETTEE-EEEECSCCGGGCEEEEEEEECSSCEE-EE
T ss_pred             ecCCCEEEEEEEEecCCCCEEEEEECCEECcCC-----CCEEEEEcCCEE-EEEECCCChhhCEEEEEEEEECCCeE-EE
Confidence            467999999999999999999999999887532     122222222222 23457779999999999999999987 56


Q ss_pred             eEEEEEEeeeeeeee
Q psy8666          83 NATLQVAVVIFFISF   97 (124)
Q Consensus        83 ~~~l~v~~~~~~~~~   97 (124)
                      ...|.|..+|.+...
T Consensus       469 ~~~l~v~~~P~~~~~  483 (570)
T 3b43_A          469 VGSITLKAPPRFVKK  483 (570)
T ss_dssp             EEEEEECCCCEEEEC
T ss_pred             EEEEEeccCCccccc
Confidence            788888888876544

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=8.2e-13  Score=73.41  Aligned_cols=83  Identities=16%  Similarity=0.262  Sum_probs=57.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.|.+.|+|++..+.....     .... ..+.. ....|.+++.+|.|.|.|.    .|.. 
T Consensus        24 ~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~-----~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~----~g~~-   92 (115)
T 2cr6_A           24 DVQEGSSATFRCRISPANYEPVHWFLDKTPLHANEL-----NEIDAQPGGY-HVLTLRQLALKDSGTIYFE----AGDQ-   92 (115)
T ss_dssp             EEETTSCEECCCEEESTTCCSCEEEESSCEECCSSS-----CCBCCBTTTB-CCBEECSCCTTTCEEEEEE----ETTE-
T ss_pred             EEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCc-----EEEEEcCCCE-EEEEEcCCChhhCEEEEEE----ECCe-
Confidence            467899999999999999999999999988764311     1111 11111 1124567799999999998    3444 


Q ss_pred             eeeEEEEEEeeeeee
Q psy8666          81 SRNATLQVAVVIFFI   95 (124)
Q Consensus        81 ~~~~~l~v~~~~~~~   95 (124)
                      ...+.|.|..+|.+.
T Consensus        93 ~~~~~L~V~~~p~~~  107 (115)
T 2cr6_A           93 RASAALRVTEKPSVF  107 (115)
T ss_dssp             ECCEEEEEECCSSCC
T ss_pred             eEEEEEEEECCCcee
Confidence            456788888776543

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.36  E-value=2.8e-11  Score=66.20  Aligned_cols=84  Identities=19%  Similarity=0.319  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCCEEeeccCCCCCceEEEccCC-----cEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDGELVETSKSDAKSQRVILPTG-----SLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+..|+.+.|.|.+.+.  +.+.+.|+|++..+.....   .........     .......|..++..|.|.|.|.+.|
T Consensus        21 ~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   97 (112)
T 3so5_A           21 SAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEM---ENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISN   97 (112)
T ss_dssp             EECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEE---EEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccc---cceeeeeccCCCccccceEEEEeccccccCCeEEEEEEe
Confidence            45689999999999854  4578999999987653210   000011000     0113345677899999999999999


Q ss_pred             CCccceeeeEEEEE
Q psy8666          75 SVGTAVSRNATLQV   88 (124)
Q Consensus        75 ~~~~~~~~~~~l~v   88 (124)
                      ..|...+..+.|.|
T Consensus        98 ~~g~~~s~~~~l~V  111 (112)
T 3so5_A           98 HFGSSYSVXAXLTI  111 (112)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CCCcEEEeEEEEEe
Confidence            99875456666665

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.35  E-value=5.4e-11  Score=72.19  Aligned_cols=85  Identities=31%  Similarity=0.509  Sum_probs=61.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCc-cCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKE-QDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~-~d~g~y~C~~~~~~~~~   79 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+....    ..... ...... ....|..++. .|.|.|.|.+.|..+..
T Consensus        17 ~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~-~~L~i~~v~~~~d~G~Y~C~~~n~~g~~   91 (212)
T 2yd1_A           17 GVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQ----SRYTVLEQPGGI-SILRIEPVRAGRDDAPYECVAENGVGDA   91 (212)
T ss_dssp             EEETTSCEEEEEEEECSSCCEEEEEETTEECCTTS----TTEEEEEETTTE-EEEEESSCCTTTTCSEEEEEEECSSSCE
T ss_pred             EEecCCEEEEEEEEccCCCCeEEEEECCEECCCCc----ceeEEEEcCCCe-EEEEEEecCCCCcCceEEEEEEeCCCCe
Confidence            46789999999999999999999999998875211    11111 112221 2234577788 99999999999998874


Q ss_pred             eeeeEEEEEEee
Q psy8666          80 VSRNATLQVAVV   91 (124)
Q Consensus        80 ~~~~~~l~v~~~   91 (124)
                      .+..+.|.|...
T Consensus        92 ~~~~~~l~V~~~  103 (212)
T 2yd1_A           92 VSADATLTIYEG  103 (212)
T ss_dssp             EEEEEEEEEECT
T ss_pred             EEeeEEEEEecc
Confidence            466778888664

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.35  E-value=1.1e-11  Score=69.65  Aligned_cols=90  Identities=18%  Similarity=0.286  Sum_probs=58.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccC---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+..|+++.|.|.+.+.|.+.+.|++++..+....   ....................|.+++.+|.|.|.|.+.|. +.
T Consensus        12 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g~   90 (124)
T 3rbg_A           12 TVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-SV   90 (124)
T ss_dssp             EEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-SE
T ss_pred             EEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-CC
Confidence            57789999999999998999999998655322100   000111111111111233456888999999999999998 66


Q ss_pred             ceeeeEEEEEEeeee
Q psy8666          79 AVSRNATLQVAVVIF   93 (124)
Q Consensus        79 ~~~~~~~l~v~~~~~   93 (124)
                      . ...+.|.|..+|.
T Consensus        91 ~-~~~~~l~V~~~P~  104 (124)
T 3rbg_A           91 S-TKEVKVIVLATMK  104 (124)
T ss_dssp             E-EEEEEEEEECC--
T ss_pred             C-cEEEEEEEEeCCC
Confidence            5 6678888877764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.34  E-value=5.1e-11  Score=71.33  Aligned_cols=93  Identities=20%  Similarity=0.317  Sum_probs=66.0

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEc--cCCc-E---EEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVIL--PTGS-L---FFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~--~~~~-~---~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+..|+.+.|.|.+. +.|.+.+.|+|++..+....   .......  ..+. .   .....|..++..|.|.|.|.+.+
T Consensus        13 ~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   89 (195)
T 2c5d_C           13 TGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELAD---STQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFL   89 (195)
T ss_dssp             EECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCE---EEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEE
T ss_pred             EEecCCcEEEecccccCCCCcEEEEEECCEEcccCC---CCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEe
Confidence            467899999999998 88999999999998876321   0011111  1111 0   23345678899999999999999


Q ss_pred             CCccceeeeEEEEEEeeeeeeee
Q psy8666          75 SVGTAVSRNATLQVAVVIFFISF   97 (124)
Q Consensus        75 ~~~~~~~~~~~l~v~~~~~~~~~   97 (124)
                      ..+...+..+.|.|..+|.+...
T Consensus        90 ~~~~~~~~~~~l~V~~~p~~~~~  112 (195)
T 2c5d_C           90 GHQTFVSQPGYVGLEGLPYFLEE  112 (195)
T ss_dssp             TTEEEECCCEEEEECCSCEEEEC
T ss_pred             CCCceecccEEEEEecCCeEEcC
Confidence            88766555688888887766543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.34  E-value=1.3e-11  Score=78.77  Aligned_cols=83  Identities=19%  Similarity=0.431  Sum_probs=62.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccC-CcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPT-GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|++++..+...     ........ +.. ....|..++..|.|.|.|.+.|..|.. 
T Consensus       233 ~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-----~~~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~a~N~~g~~-  305 (317)
T 2y25_A          233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD-----DHCNLKFEAGRT-AYFTINGVSTADSGKYGLVVKNKYGSE-  305 (317)
T ss_dssp             EEETTSBBCEEEEEECSSCCEEEEEESSSEECCC-----SSEEECCBTTTE-EEEEEBSCCSTTCEEEEEEEEETTEEE-
T ss_pred             EEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCC-----CcEEEEEcCCCE-EEEEECCCCHHHCEEEEEEEEeCCCeE-
Confidence            4568999999999999999999999999887632     12222222 322 333567789999999999999999987 


Q ss_pred             eeeEEEEEEee
Q psy8666          81 SRNATLQVAVV   91 (124)
Q Consensus        81 ~~~~~l~v~~~   91 (124)
                      +..+.|.|..|
T Consensus       306 ~~~~~l~V~~P  316 (317)
T 2y25_A          306 TSDFTVSVFIP  316 (317)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEEcC
Confidence            56777777643

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.34  E-value=7.1e-12  Score=67.84  Aligned_cols=79  Identities=20%  Similarity=0.345  Sum_probs=53.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+. .|.|.+.|+|++..+...     ........+... ...|.+++.+|.|.|.|.+    +.. .
T Consensus        19 ~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~-----~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~a----g~~-~   86 (100)
T 2yuv_A           19 QVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPS-----TKYIFEHKGCQR-ILFINNCQMTDDSEYYVTA----GDE-K   86 (100)
T ss_dssp             EECTTEEEEEEEEES-CTTSCEEEEESSCBCCCB-----TTEEEEEETTEE-EEEEEEECTTTCCEEEEEE----TTE-E
T ss_pred             EEcCCCcEEEEEEec-CCCceEEEEECCEECCCC-----CCEEEEecCCEE-EEEEcCCCcCcCEEEEEEE----CCc-e
Confidence            356899999999998 689999999999876532     122222222221 2233455899999999998    444 4


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|..+|
T Consensus        87 ~~~~l~V~~~P   97 (100)
T 2yuv_A           87 CSTELFVRSGP   97 (100)
T ss_dssp             EEEEEEECCSC
T ss_pred             EEEEEEEecCC
Confidence            56777777654

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.33  E-value=3.4e-13  Score=75.66  Aligned_cols=88  Identities=19%  Similarity=0.274  Sum_probs=60.9

Q ss_pred             EEecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEE-EccCCcEEEEEEEcCCCccCC-eEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHGKKEQDG-GVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~d~-g~y~C~~~~~~~~   78 (124)
                      .+..|+.+.|.|.+.+.|.|. +.|++++..+..... ...... ............|..++.+|. |.|.|.+.|..|.
T Consensus        24 ~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~  102 (122)
T 2cry_A           24 HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS-GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS  102 (122)
T ss_dssp             CCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEE-TTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCE
T ss_pred             EEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCC-CCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCe
Confidence            356799999999999999997 999999887653100 001111 111222234456788899998 9999999999998


Q ss_pred             ceeeeEEEEEEee
Q psy8666          79 AVSRNATLQVAVV   91 (124)
Q Consensus        79 ~~~~~~~l~v~~~   91 (124)
                      . ...+.|.|..+
T Consensus       103 ~-~~~~~l~V~~~  114 (122)
T 2cry_A          103 D-TEIIRLKEQGS  114 (122)
T ss_dssp             E-EEEECCCCSCS
T ss_pred             E-EEEEEEEECCC
Confidence            7 45666666543

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=8.2e-13  Score=71.10  Aligned_cols=73  Identities=33%  Similarity=0.586  Sum_probs=53.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc-ce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT-AV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~-~~   80 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+...           ....+    .|..++..|.|.|.|.+.|..+. ..
T Consensus        21 ~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-----------~~~~L----~i~~v~~~d~G~Y~C~a~n~~~~~~~   85 (96)
T 2ens_A           21 AVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-----------PSPVL----ILPEIGPQDQGTYSCVATHSSHGPQE   85 (96)
T ss_dssp             EECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC-----------CCSEE----EEESCCTTTCEEEECEECCSSCCCEE
T ss_pred             EEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC-----------CCCEE----EECCCCcccCEEEEEEEEeCCCCcEE
Confidence            4678999999999999999999999998766521           12233    34566899999999999996543 33


Q ss_pred             eeeEEEEEE
Q psy8666          81 SRNATLQVA   89 (124)
Q Consensus        81 ~~~~~l~v~   89 (124)
                      +..+.|.|.
T Consensus        86 s~~~~v~V~   94 (96)
T 2ens_A           86 SRAVSISII   94 (96)
T ss_dssp             CCCEEEEEC
T ss_pred             EEEEEEEEe
Confidence            445555543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.33  E-value=8.3e-11  Score=71.41  Aligned_cols=84  Identities=26%  Similarity=0.442  Sum_probs=60.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|++..+...    ............ ....|..++ ..|.|.|.|.+.|..+.. 
T Consensus        17 ~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~----~~~~~~~~~~~~-~~L~i~~v~~~~d~G~Y~C~a~n~~g~~-   90 (212)
T 2yd6_A           17 TGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ----RFEVIEFDDGSG-SVLRIQPLRTPRDEAIYECVASNNVGEI-   90 (212)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEETTEECCCT----TEEEEEEGGGTE-EEEEECSCCTTTTCEEEEEEEEETTEEE-
T ss_pred             EEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCC----ceeEEEEcCCCc-eEEEEeccCCCCCCeEEEEEEEcCCCcE-
Confidence            4678999999999999999999999999877632    111111122222 223456774 899999999999998876 


Q ss_pred             eeeEEEEEEee
Q psy8666          81 SRNATLQVAVV   91 (124)
Q Consensus        81 ~~~~~l~v~~~   91 (124)
                      ...+.|.|...
T Consensus        91 ~~~~~l~V~~~  101 (212)
T 2yd6_A           91 SVSTRLTVLRE  101 (212)
T ss_dssp             EEEEEEEEECG
T ss_pred             EEEEEEEEecc
Confidence            56777777654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.33  E-value=5.7e-12  Score=76.55  Aligned_cols=81  Identities=36%  Similarity=0.591  Sum_probs=60.8

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|++++..+....    ... ....+.+    .|..++.+|.|.|.|.+.|..|...+.
T Consensus       122 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~----~~~-~~~~~~L----~i~~v~~~d~G~Y~C~a~N~~G~~~s~  192 (212)
T 2yd1_A          122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN----PRY-SLKDGFL----QIENSREEDQGKYECVAENSMGTEHSK  192 (212)
T ss_dssp             EETTCCEEECCEEECSSCCEEEEEETTEECCTTS----TTE-EEETTEE----EECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             eecCCeEEEEEEeccCCCCeEEEEECCeEcccCC----CeE-EccCCeE----EEccCChhhCEEEEEEeecCCCceeEE
Confidence            5579999999999999999999999998876321    111 2233433    456669999999999999999988555


Q ss_pred             eEEEEEEeee
Q psy8666          83 NATLQVAVVI   92 (124)
Q Consensus        83 ~~~l~v~~~~   92 (124)
                      .+.|.|....
T Consensus       193 ~~~l~V~~~~  202 (212)
T 2yd1_A          193 ATNLYVKVRR  202 (212)
T ss_dssp             CEEEEEEC--
T ss_pred             EEEEEEEecc
Confidence            5788887654

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.33  E-value=6.3e-12  Score=80.47  Aligned_cols=77  Identities=19%  Similarity=0.299  Sum_probs=59.1

Q ss_pred             EecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.|.|.| .+.|+|++..+...      .  ......+    .|..++..|.|.|.|.+.|..|.. +
T Consensus       229 ~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~------~--~~~~~~L----~i~~v~~~d~G~Y~C~a~N~~G~~-~  295 (313)
T 4fqp_A          229 YLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF------A--VAQGAQL----LIRPVDKPINTTLICNVTNALGAR-Q  295 (313)
T ss_dssp             ETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT------E--EEETTEE----EECCCSSCCEEEEEEEEECSSCEE-E
T ss_pred             ecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc------e--EEeCCEE----EECcCChhhCEEEEEEEEeCCCcE-E
Confidence            4468889999999999999 59999999876531      1  1223333    356669999999999999999987 6


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|...|
T Consensus       296 ~~~~l~V~~~P  306 (313)
T 4fqp_A          296 AELTVQVKEGP  306 (313)
T ss_dssp             EEEEEEEECCC
T ss_pred             EEEEEEEEeCC
Confidence            67888887654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.33  E-value=2.3e-11  Score=72.58  Aligned_cols=83  Identities=25%  Similarity=0.456  Sum_probs=59.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|++..+......  ........+.  ....|..++..|.|.|.|.+.|..+.. .
T Consensus        16 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~   90 (194)
T 2a38_A           16 VVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP--GVQISFSDGR--AKLTIPAVTKANSGRYSLKATNGSGQA-T   90 (194)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTST--TCEEEEETTE--EEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCC--ceEEEeCCCE--EEEEECCCCcccCEEEEEEEEcCCceE-e
Confidence            4678999999999999999999999999876542110  1111112221  223457779999999999999988776 4


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ....|.|.
T Consensus        91 ~~~~l~v~   98 (194)
T 2a38_A           91 STAELLVK   98 (194)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEc
Confidence            56677776

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.8e-12  Score=70.91  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=57.0

Q ss_pred             EEecCCCEEEEEeeeccCC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|. +.+.|+|+|..+...     .+......+.. ....|.+++.+|.|.|.|.+.|.     
T Consensus        19 ~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~-----~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~~~-----   87 (104)
T 2eny_A           19 EVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS-----SRFQATRQGRK-YILVVREAAPSDAGEVVFSVRGL-----   87 (104)
T ss_dssp             EEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBC-----SSCEEEEETTE-EEEEECSCCTTTCSCEEEEETTE-----
T ss_pred             EEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCC-----CCEEEEEcCCE-EEEEECCCCHHHCEEEEEEECCe-----
Confidence            4678999999999988775 479999999877542     12222222322 23456788999999999987552     


Q ss_pred             eeeEEEEEEeeee
Q psy8666          81 SRNATLQVAVVIF   93 (124)
Q Consensus        81 ~~~~~l~v~~~~~   93 (124)
                      .....|.|..+|.
T Consensus        88 ~~~a~L~V~~~p~  100 (104)
T 2eny_A           88 TSKASLIVRERSG  100 (104)
T ss_dssp             EEEECEEEECCCS
T ss_pred             eEEEEEEEeCCCc
Confidence            3567788877664

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.32  E-value=9.2e-11  Score=69.85  Aligned_cols=89  Identities=28%  Similarity=0.446  Sum_probs=65.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+...    .........+..   ..|..++..|.|.|.|.+.+..+....
T Consensus        18 ~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~---L~i~~~~~~d~G~Y~C~~~~~~~~~~~   90 (192)
T 2iep_A           18 DALVEEVATFMCAVESYPQPEISWTRNKILIKLF----DTRYSIRENGQL---LTILSVEDSDDGIYCCTANNGVGGAVE   90 (192)
T ss_dssp             EEETTSCEEEECCEEEESCCEEEEEETTEECCTT----CTTEEEEGGGTE---EEESSCCGGGCEEEEEEEECSSSCCEE
T ss_pred             eeeCCCcEEEEeeCCCCCCCeEEEEECCEEcccc----CccEEEcCCccE---EEEcCCCcccCeEEEEEEEcCCCceeE
Confidence            4678999999999999999999999999876532    122222222221   235667999999999999998887545


Q ss_pred             eeEEEEEEeeeeeeee
Q psy8666          82 RNATLQVAVVIFFISF   97 (124)
Q Consensus        82 ~~~~l~v~~~~~~~~~   97 (124)
                      ....|.|..+|.+...
T Consensus        91 ~~~~l~v~~~p~~~~~  106 (192)
T 2iep_A           91 SCGALQVKMKPKITRP  106 (192)
T ss_dssp             EEEEEEEEEEEEEEEC
T ss_pred             eEEEEEEEeCCccccC
Confidence            6778888877765543

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.32  E-value=1.1e-10  Score=73.46  Aligned_cols=88  Identities=26%  Similarity=0.331  Sum_probs=64.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|++..+....   ...... ... . ....|..++..|.|.|.|.+.|..+.. +
T Consensus        16 ~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~---~~~~~~-~~~-~-~~L~i~~v~~~d~G~Y~C~~~n~~g~~-~   88 (284)
T 2rik_A           16 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG---NYKMTL-VEN-T-ATLTVLKVTKGDAGQYTCYASNVAGKD-S   88 (284)
T ss_dssp             EEETTCCEEEEEEEESSSCCEEEEEETTEECCSSS---SEEEEE-ETT-E-EEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCC---cEEEEE-cCC-E-EEEEEecCCcccCEEEEEEEEECCceE-E
Confidence            46789999999999999999999999998775321   111111 111 1 223457779999999999999998876 6


Q ss_pred             eeEEEEEEeeeeeee
Q psy8666          82 RNATLQVAVVIFFIS   96 (124)
Q Consensus        82 ~~~~l~v~~~~~~~~   96 (124)
                      ..+.|.|..+|.+..
T Consensus        89 ~~~~l~V~~~p~~~~  103 (284)
T 2rik_A           89 CSAQLGVQEPPRFIK  103 (284)
T ss_dssp             EEEEEEEECCCEEEE
T ss_pred             EEEEEEccCCCcccc
Confidence            688888888776543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.31  E-value=3.8e-11  Score=71.89  Aligned_cols=80  Identities=28%  Similarity=0.496  Sum_probs=58.6

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcC-CCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG-KKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.+.|.|.+.|++++..+...     ............ ...|.. ++..|.|.|.|.+.|..|.. +
T Consensus       116 ~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-----~~~~~~~~~~~~-~L~i~~~~~~~d~G~Y~C~a~N~~g~~-~  188 (197)
T 2j8h_A          116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-----GHYQVIVTRSFT-SLVFPNGVERKDAGFYVVCAKNRFGID-Q  188 (197)
T ss_dssp             EETTCCCEEEEEEEEESCCEEEEEESSCEECSS-----SSCEEEECSSEE-EEECTTCCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EeCCCEEEEEEEEEecCCCcEEEEECCEEeecC-----CCEEEEEcCCce-EEEEeCCCCcccCEeEEEEEEeCCCcE-e
Confidence            567999999999999999999999999877632     111122222222 234566 78999999999999999886 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus       189 ~~~~l~V~  196 (197)
T 2j8h_A          189 KTVELDVA  196 (197)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            67777664

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.31  E-value=8e-12  Score=76.02  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      +.+|+.+.|.|.+.|.|.|.+.|++++..+.... ....+.....++.+.+.. +..++.+|.|.|.|.|.|..|..+
T Consensus       118 v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~-~~~~r~~~~~~g~l~il~-i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          118 FPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPT-AANGGVMKEKDGSLSVAV-DLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             SSCSCCEEEEEEEEEESCCEEEECCC-------------CCEECTTSCEEEEE-EEEECSSCCCCEEEEEESSSCEEE
T ss_pred             EcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcc-cccceEEEeCCCCEEEEE-ECCCCHHHCEEEEEEEEcCCCEEE
Confidence            4579999999999999999999998765443211 111233344556554432 344589999999999999999874

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=2.3e-12  Score=69.94  Aligned_cols=82  Identities=17%  Similarity=0.238  Sum_probs=55.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.| |.+.|+|+|..+...... ..+......+.. ....|.+++.+|.|.|.|.+.|.     .
T Consensus        19 ~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~-~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~-----~   90 (101)
T 2edk_A           19 QVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSF-KARYRFKKDGKR-HILIFSDVVQEDRGRYQVITNGG-----Q   90 (101)
T ss_dssp             EEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCS-SCCCEEEECSSE-EEEECSSCCGGGCSBEEEECSSC-----E
T ss_pred             EEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCc-ceeEEEEECCCE-EEEEECCCChhhCEEEEEEEcCC-----c
Confidence            467899999999999888 999999999876542100 002222333332 23456788999999999999872     2


Q ss_pred             eeEEEEEEee
Q psy8666          82 RNATLQVAVV   91 (124)
Q Consensus        82 ~~~~l~v~~~   91 (124)
                      ....|.|..+
T Consensus        91 ~~~~l~V~~~  100 (101)
T 2edk_A           91 CEAELIVEEK  100 (101)
T ss_dssp             ECCBEEEECC
T ss_pred             EEEEEEEeCC
Confidence            3445665544

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.30  E-value=2.2e-11  Score=74.04  Aligned_cols=87  Identities=69%  Similarity=1.168  Sum_probs=63.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+.|.|.+.|+|++..+....  ..........+.+.+...|..++..|.|.|.|.+.|..+...+
T Consensus        20 ~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~   97 (217)
T 2vr9_A           20 VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE--KKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS   97 (217)
T ss_dssp             EECTTSCEEECCEEECSSCCEEEEEETTEECCCSS--SSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEEC
T ss_pred             EEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCC--ccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCcccc
Confidence            46789999999999999999999999998876421  1112223344555444456677899999999999998876644


Q ss_pred             eeEEEEEEe
Q psy8666          82 RNATLQVAV   90 (124)
Q Consensus        82 ~~~~l~v~~   90 (124)
                      ....|.|..
T Consensus        98 ~~~~l~v~~  106 (217)
T 2vr9_A           98 RHASLQIAV  106 (217)
T ss_dssp             CCEEEEECE
T ss_pred             ccceEEEEE
Confidence            566666655

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.30  E-value=3.7e-11  Score=64.42  Aligned_cols=75  Identities=20%  Similarity=0.351  Sum_probs=51.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+ +.|.+.+.|+|++..+....     .......+.. ....|..++..|.|.|.|.+    +.. .
T Consensus        19 ~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~-----~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a----g~~-~   86 (95)
T 2k1m_A           19 EVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASN-----KYGLATEGTR-HTLTVREVGPADQGSYAVIA----GSS-K   86 (95)
T ss_dssp             EEETTSCEEEEEEC-SSSSCCCEEECSSSEECSST-----TCEEEEETTE-EEEEESSCCTTCCSEEEEEE----TTE-E
T ss_pred             EEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCC-----cEEEEEcCCE-EEEEEcCCCcccCEEEEEEE----CCc-e
Confidence            46789999999999 77889999999998775321     1122222322 23456788999999999998    333 3


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        87 ~~~~l~V   93 (95)
T 2k1m_A           87 VKFDLKV   93 (95)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            3455554

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.30  E-value=5.7e-11  Score=75.54  Aligned_cols=88  Identities=27%  Similarity=0.427  Sum_probs=64.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+....    ..... ...+.. ....|..++..|.|.|.|.+.|..|.. 
T Consensus        15 ~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~a~n~~g~~-   88 (305)
T 2nzi_A           15 NVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG----LKYRIQEFKGGY-HQLIIASVTDDDATVYQVRATNQGGSV-   88 (305)
T ss_dssp             EECTTCCEEEEEEEECSSCCEEEEEETTEECCCCS----SSEEEEEETTTE-EEEEESSCCGGGCSEEEEEEEETTEEE-
T ss_pred             EEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCC----CeEEEEECCCCE-EEEEEccCChhhCeEEEEEEEcCCCCc-
Confidence            46789999999999999999999999998776321    11111 112221 233467789999999999999998876 


Q ss_pred             eeeEEEEEEeeeeee
Q psy8666          81 SRNATLQVAVVIFFI   95 (124)
Q Consensus        81 ~~~~~l~v~~~~~~~   95 (124)
                      +..+.|.|..+|.+.
T Consensus        89 ~~~~~l~V~~~p~~~  103 (305)
T 2nzi_A           89 SGTASLEVEVPAKIH  103 (305)
T ss_dssp             EEEEEEEECEEEEEC
T ss_pred             cceEEEEEecCCccC
Confidence            667888887776543

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.30  E-value=1.8e-11  Score=66.54  Aligned_cols=79  Identities=24%  Similarity=0.455  Sum_probs=55.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.| +.|+|++..+...     ........+... ...|.+++.+|.|.|.|.    .+.. .
T Consensus        19 ~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~-----~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~----~g~~-~   86 (103)
T 2e7b_A           19 EVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG-----DKYSLRQEGAML-ELVVRNLRPQDSGRYSCS----FGDQ-T   86 (103)
T ss_dssp             EEESSSCEEEEEECSSCCCS-CEEEESSSBCCCS-----SSEEEEECSSEE-EEEECSCCTTTCCCEEEE----CSSC-B
T ss_pred             EEECCCcEEEEEEEeCCCCC-eEEEECCEECCCC-----CcEEEEEcCCEE-EEEEccCCcccCEEEEEE----ECCc-E
Confidence            46789999999999998888 9999998876432     222333344432 334678899999999998    3333 4


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|..+|
T Consensus        87 ~~~~l~V~~~p   97 (103)
T 2e7b_A           87 TSATLTVTALP   97 (103)
T ss_dssp             CCBCEEEECCC
T ss_pred             EEEEEEEEecc
Confidence            46677776655

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.30  E-value=7.4e-11  Score=64.14  Aligned_cols=88  Identities=16%  Similarity=0.228  Sum_probs=57.9

Q ss_pred             EEecCCCEEEEEeeec-cCCCeEEEEeCCEEeecc-CCCCCceEE-EccCC-cEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETS-KSDAKSQRV-ILPTG-SLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      ++..|+.+.|.|++.+ .|.|.++|.|.+...+.. ......... ..... +..++ .+..+...|.|.|+|.|.+..|
T Consensus        25 tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL-~f~~V~~sDsG~YrCsAn~~~g  103 (122)
T 1xau_A           25 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVL-HFKPIHLSDNGSYSCSTNFNSQ  103 (122)
T ss_dssp             EECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEE-EETTCCGGGCEEEEEEEEETTE
T ss_pred             EEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEE-EEeeEEEcCCccEEEEeeCCCC
Confidence            4678999999999964 689999999865322111 001110111 11222 33333 4578899999999999999998


Q ss_pred             cceeeeEEEEEEe
Q psy8666          78 TAVSRNATLQVAV   90 (124)
Q Consensus        78 ~~~~~~~~l~v~~   90 (124)
                      ...+....|.|..
T Consensus       104 ~ieSHs~ti~V~~  116 (122)
T 1xau_A          104 VINSHSVTIHVRE  116 (122)
T ss_dssp             EEECCCEEEEEC-
T ss_pred             ceeeeEEEEEEEe
Confidence            8877777776654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.30  E-value=6.6e-11  Score=81.57  Aligned_cols=109  Identities=25%  Similarity=0.278  Sum_probs=73.0

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.|.|.|.+.|+|++..+...     ............ ...|.+++.+|.|.|.|.+.|..|.. +.
T Consensus       303 v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~-----~~~~~~~~~~~~-~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~  375 (570)
T 3b43_A          303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQES-----SKFRMSFVESVA-VLEMYNLSVEDSGDYTCEAHNAAGSA-SS  375 (570)
T ss_dssp             EESSCEEEEEEEEESSSSCEEEEEETTEECCCS-----SSEEEEEETTEE-EEEEESCCGGGCEEEEEEEEBTTBCC-EE
T ss_pred             EcCCCcEEEEEEEeeCCCCEEEEeECCEECCCC-----CcEEEEEECCEE-EEEECCCCcccCEEEEEEEEeCCCEE-EE
Confidence            567899999999999999999999999887632     111111111111 22356779999999999999999987 56


Q ss_pred             eEEEEEEeeeeeeeeccceeh-hhhhheeeeeecCcc
Q psy8666          83 NATLQVAVVIFFISFFRFKLS-AYLYDLFRGVVNKTN  118 (124)
Q Consensus        83 ~~~l~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  118 (124)
                      .+.|.|..+|.+...+..... ..-...+.|.+.|..
T Consensus       376 ~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P  412 (570)
T 3b43_A          376 STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP  412 (570)
T ss_dssp             EEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSS
T ss_pred             EEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCC
Confidence            788999888876544332111 111224556655543

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.29  E-value=7.8e-11  Score=80.20  Aligned_cols=92  Identities=18%  Similarity=0.142  Sum_probs=68.6

Q ss_pred             EEecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEccCC---cEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTG---SLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .+..|+.+.|.|.+.+.|.|. +.|+|++..+....    .........   .......|..++..|.|.|.|.+.|..|
T Consensus       324 ~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  399 (524)
T 2ec8_A          324 FVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKW----EDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV  399 (524)
T ss_dssp             EECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSB----CCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             EEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCc----cceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCc
Confidence            356899999999999999999 99999998765421    011111111   1233445678899999999999999999


Q ss_pred             cceeeeEEEEEEeeeeeeeec
Q psy8666          78 TAVSRNATLQVAVVIFFISFF   98 (124)
Q Consensus        78 ~~~~~~~~l~v~~~~~~~~~~   98 (124)
                      .. +..+.|.|..+|.+...+
T Consensus       400 ~~-~~~~~l~V~~~P~i~~~~  419 (524)
T 2ec8_A          400 NA-AIAFNVYVNTKPEILTYD  419 (524)
T ss_dssp             EE-EEEEEEEECEEEEEEEEE
T ss_pred             eE-EEEEEEEEecCCeEeecc
Confidence            87 678899998888776554

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.29  E-value=3.3e-11  Score=79.35  Aligned_cols=84  Identities=29%  Similarity=0.480  Sum_probs=61.6

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeC-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.|.|.|.+.|+|+ +..+..      ........+.+    .|..++.+|.|.|.|.+.|..|.. .
T Consensus       217 ~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~------~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~G~~-~  285 (384)
T 3kld_A          217 AEKGTTVKLECFALGNPVPTILWRRADGKPIAR------KARRHKSNGIL----EIPNFQQEDAGSYECVAENSRGKN-V  285 (384)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTCCCCCT------TCEECTTSCEE----EECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             ecCCCcEEEEEEEeecCCCcEEEEeCCCccccc------cceecCCCcEE----EECCCChhhCEEEEEEEEcCCCeE-E
Confidence            46799999999999999999999995 433331      11111223333    356779999999999999999987 5


Q ss_pred             eeEEEEEEeeeeeeee
Q psy8666          82 RNATLQVAVVIFFISF   97 (124)
Q Consensus        82 ~~~~l~v~~~~~~~~~   97 (124)
                      ....|.|..+|.+...
T Consensus       286 ~~~~l~v~~~P~~~~~  301 (384)
T 3kld_A          286 AKGQLTFYAQPNWVQI  301 (384)
T ss_dssp             EEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEecCCccccC
Confidence            6778888887765443

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.9e-11  Score=65.67  Aligned_cols=80  Identities=21%  Similarity=0.300  Sum_probs=55.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|. .+.|.|.+.|+|++..+...     ........+.. ....|.+++.+|.|.|.|.    .+.. .
T Consensus        19 ~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~----~g~~-~   86 (103)
T 2dku_A           19 QVEEKGTAVFTCK-TEHPAATVTWRKGLLELRAS-----GKHQPSQEGLT-LRLTISALEKADSDTYTCD----IGQA-Q   86 (103)
T ss_dssp             EEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSS-----SSEEEEEETTE-EEEEEESCCTTTCSEEEEE----CSSC-B
T ss_pred             EEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCC-----CeEEEEeCCCE-EEEEECCCCcccCEEEEEE----eCCc-e
Confidence            4678999999999 47888999999999876532     12222223322 2234567799999999997    4444 4


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|...|.
T Consensus        87 ~~~~l~V~~~p~   98 (103)
T 2dku_A           87 SRAQLLVQGRRS   98 (103)
T ss_dssp             CCEEEEEECSCC
T ss_pred             EEEEEEEeCccC
Confidence            567888876654

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.29  E-value=1.4e-10  Score=69.07  Aligned_cols=92  Identities=15%  Similarity=0.342  Sum_probs=62.5

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+..|+.+.|.|.+.+.+ .+.+.|++ +|..+....    ................|..++..|.|.|.|.+.+..+..
T Consensus        13 ~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   88 (191)
T 1epf_A           13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ----QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   88 (191)
T ss_dssp             EEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBS----SSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             EEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCC----CeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcc
Confidence            467899999999998876 78999999 887665321    111111110111223457779999999999999988544


Q ss_pred             eeeeEEEEEEeeeeeeee
Q psy8666          80 VSRNATLQVAVVIFFISF   97 (124)
Q Consensus        80 ~~~~~~l~v~~~~~~~~~   97 (124)
                      .+..+.|.+..+|.+...
T Consensus        89 ~~~~~~l~v~~~p~~~~~  106 (191)
T 1epf_A           89 SEATVNVKIFQKLMFKNA  106 (191)
T ss_dssp             EEEEEEEEEECCSEEEEC
T ss_pred             eEEEEEEEeecCceEecC
Confidence            466777887776655433

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.29  E-value=2.8e-11  Score=80.96  Aligned_cols=84  Identities=11%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+.|.|.+.|++++..+....     .  ............|.+++.+|.|.|.|.+.|..|.. .
T Consensus        59 ~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~-----~--~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~-~  130 (423)
T 3qs7_E           59 EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQP-----H--FDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY-T  130 (423)
T ss_dssp             EECSSCCEEEEEECSCCSSCEEEEEETTEEECCCC-----B--C-----CEEEEEESSCCSSSCSEEEEEEEC--CEE-E
T ss_pred             EEecCCcEEEEEEEEcCCCCeEEEEECCCccCccc-----e--eccccceEEEEEEeecCcccCEEEEEEEEcCCCcE-E
Confidence            57789999999999999999999999987765311     0  01111111223567889999999999999998876 5


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..+|.
T Consensus       131 ~~~~l~V~~~p~  142 (423)
T 3qs7_E          131 ILFTVSIRNTLL  142 (423)
T ss_dssp             EEEEEEEC----
T ss_pred             EEEEEEEecCcc
Confidence            577777775443

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.29  E-value=6.4e-11  Score=65.36  Aligned_cols=79  Identities=20%  Similarity=0.417  Sum_probs=55.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+.  |.+.|+|++..+...     ........+.. ....|.+++.+|.|.|.|.+    +.. .
T Consensus        30 ~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a----~~~-~   96 (113)
T 2edh_A           30 EATEGATAVLRCELSKM--APVEWWKGHETLRDG-----DRHSLRQDGAR-CELQIRGLVAEDAGEYLCMC----GKE-R   96 (113)
T ss_dssp             EECTTSCEEEEEEESSC--CCCEEEESSSBCCCS-----SSEEEEEETTE-EEEEECSCCSTTCEEEEEEE----TTE-E
T ss_pred             EEeCCCeEEEEEEECCC--CcEEEEECCEECCCC-----CcEEEEECCCE-EEEEECCCChhhCEEEEEEe----CCC-C
Confidence            46789999999999764  789999999876532     22222333322 23356788999999999998    333 5


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..+|.
T Consensus        97 ~~~~l~V~~~p~  108 (113)
T 2edh_A           97 TSAMLTVRAMPS  108 (113)
T ss_dssp             EEEEEEECCCCC
T ss_pred             EEEEEEEeCCCC
Confidence            567788876653

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.28  E-value=2.2e-10  Score=72.14  Aligned_cols=88  Identities=30%  Similarity=0.426  Sum_probs=64.6

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.+.+.|++++..+...     ........... ....|..++..|.|.|.|.+.|..|.. ..
T Consensus       111 v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~  183 (284)
T 2rik_A          111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQES-----SKFRMSFVESV-AVLEMYNLSVEDSGDYTCEAHNAAGSA-SS  183 (284)
T ss_dssp             EETTCCEEEEEEEESSSCCEEEEEETTEECCCS-----SSEEEEEETTE-EEEEECSCCGGGCEEEEEEEECSSCEE-EE
T ss_pred             ecCCceEEEEEEEeeeCCCEEEEEECCEECcCC-----CcEEEEEcCCE-EEEEECCCCcccCEEEEEEEEcCCCce-eE
Confidence            568999999999999999999999999877632     11111111111 223456778999999999999998877 56


Q ss_pred             eEEEEEEeeeeeeee
Q psy8666          83 NATLQVAVVIFFISF   97 (124)
Q Consensus        83 ~~~l~v~~~~~~~~~   97 (124)
                      .+.|.|..+|.+...
T Consensus       184 ~~~l~V~~~p~~~~~  198 (284)
T 2rik_A          184 STSLKVKEPPVFRKK  198 (284)
T ss_dssp             EEEEEEECCCBCCSC
T ss_pred             EEEEEEecCCcceeC
Confidence            888888887765443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.28  E-value=3.2e-11  Score=72.24  Aligned_cols=77  Identities=29%  Similarity=0.438  Sum_probs=57.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|++++..+...      .........+    .|..++..|.|.|.|.+.|..|.. .
T Consensus       124 ~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~------~~~~~~~~~L----~i~~v~~~d~G~Y~C~a~n~~g~~-~  192 (201)
T 3s97_C          124 YALMGQNVTLECFALGNPVPDIRWRKVLEPMPST------AEISTSGAVL----KIFNIQLEDEGIYECEAENIRGKD-K  192 (201)
T ss_dssp             EEETTCCEEEEEEEEEESCCEEEEEETTBCCCTT------CEEETTTTEE----EECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEecCCcEEEEEEccCCCCCceEEEeCCCcCCCc------eeecCCCCEE----EEccCChhhCEEEEEEEEecCCce-e
Confidence            3567999999999999999999999999865521      2222233333    345668999999999999999887 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus       193 ~~~~l~V~  200 (201)
T 3s97_C          193 HQARIYVQ  200 (201)
T ss_dssp             EEEEEEEE
T ss_pred             eeEEEEEe
Confidence            56666664

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.28  E-value=4.8e-11  Score=71.22  Aligned_cols=79  Identities=32%  Similarity=0.521  Sum_probs=56.0

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|++++..+...     ........+... ...|..++..|.|.|.|.+.|..|.. ..
T Consensus       115 ~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~  187 (194)
T 2a38_A          115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS-----LDFQISQEGDLY-SLLIAEAYPEDSGTYSVNATNSVGRA-TS  187 (194)
T ss_dssp             ECTTEEEEEEEEEEEESCCEEEEEETTEECCCS-----SSEEEEEETTEE-EEEEEEECGGGCEEEEEEEEETTEEE-EE
T ss_pred             EcCCCEEEEEEEEEEecCCeEEEEECCEECCCC-----CcEEEEEcCCEE-EEEECCCChhcCeEEEEEEEeCCCce-EE
Confidence            567889999999999999999999999877632     122222222211 12234448999999999999999887 45


Q ss_pred             eEEEEE
Q psy8666          83 NATLQV   88 (124)
Q Consensus        83 ~~~l~v   88 (124)
                      .+.|.|
T Consensus       188 ~~~l~V  193 (194)
T 2a38_A          188 TAELLV  193 (194)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666655

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.28  E-value=3.5e-11  Score=69.34  Aligned_cols=90  Identities=11%  Similarity=0.166  Sum_probs=58.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccC---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|++.+.......   .....+..............|.+++.+|.|.|.|.+.|. +.
T Consensus        49 ~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~-~~  127 (145)
T 1z9m_A           49 TVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-PV  127 (145)
T ss_dssp             EEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSS-SC
T ss_pred             EEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcC-CC
Confidence            56789999999999988889999995332111000   000111111111111233456888999999999999998 66


Q ss_pred             ceeeeEEEEEEeeee
Q psy8666          79 AVSRNATLQVAVVIF   93 (124)
Q Consensus        79 ~~~~~~~l~v~~~~~   93 (124)
                      . +..+.|.|..+|.
T Consensus       128 ~-~~~~~L~V~~~P~  141 (145)
T 1z9m_A          128 R-TAKSLVTVLGIPQ  141 (145)
T ss_dssp             E-EEEEEEEEECCCC
T ss_pred             c-eEEEEEEEEeCCC
Confidence            5 6678888877653

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.28  E-value=1.4e-11  Score=81.15  Aligned_cols=77  Identities=35%  Similarity=0.591  Sum_probs=59.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|+|..+...     ... ....+.+    .|..++.+|.|.|.|.+.|..|.. .
T Consensus       306 ~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-----~~~-~~~~~~L----~i~~v~~~D~G~Y~C~A~N~~G~~-~  374 (384)
T 3kld_A          306 HVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR-----DRI-QIEQGTL----NITIVNLSDAGMYQCVAENKHGVI-F  374 (384)
T ss_dssp             EECTTCCEEEECEEEEESCCEEEEEETTEECCCB-----TTE-EEETTEE----EESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EecCCCCEEEEeECCccCCCeEEEEECCEECCCC-----ccE-EEeCCEE----EEeecChhhCEEEEEEEEeCCceE-E
Confidence            3567999999999999999999999999887532     121 2233433    356668999999999999999988 4


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ....|.|.
T Consensus       375 ~~a~L~V~  382 (384)
T 3kld_A          375 SSAELSVI  382 (384)
T ss_dssp             EEEEEEEC
T ss_pred             eceEEEEe
Confidence            56777664

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.28  E-value=8.6e-12  Score=68.20  Aligned_cols=78  Identities=23%  Similarity=0.343  Sum_probs=54.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.+ +.|+|++..+...     ........+.. ....|..++.+|.|.|.|.+.|...   +
T Consensus        19 ~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~n~~~---~   88 (106)
T 2dlt_A           19 TVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPS-----KRITISHVGRF-HKLVIDDVRPEDEGDYTFVPDGYAL---S   88 (106)
T ss_dssp             EEESSCCEECCCEESCSSCE-EEEEESSCBCCCC-----SSCEEEEETTE-EEEEESSCCTTTCSCEEEEEETSCC---C
T ss_pred             EEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCC-----CCEEEEEeCCE-EEEEECCCCcCCCEEEEEEEccCCc---e
Confidence            46789999999999988877 9999999876532     11122222322 2335678899999999999999822   2


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ....|.|.
T Consensus        89 ~~~~l~V~   96 (106)
T 2dlt_A           89 LSAKLNFL   96 (106)
T ss_dssp             CCBCEEEE
T ss_pred             EEEEEEEE
Confidence            34455554

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.28  E-value=3.5e-10  Score=67.42  Aligned_cols=84  Identities=27%  Similarity=0.433  Sum_probs=59.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe--CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK--DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~~   78 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|++  ++..+....  ............. ....|..++ .+|.|.|.|.+.|..|.
T Consensus       103 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~--~~~~~~~~~~~~~-~~L~i~~~~~~~d~G~Y~C~a~N~~g~  179 (190)
T 2wv3_A          103 NKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISN--SSGRFFIINKENY-TELNIVNLQITEDPGEYECNATNSIGS  179 (190)
T ss_dssp             EEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCC--TTSCEEEEECSSE-EEEEECSCCTTTSCEEEEEEEECSSCE
T ss_pred             eeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeec--CCCeEEEecCCCe-eEEEEEeccccCCCEEEEEEEEecCCc
Confidence            35689999999999999999999999  777664321  1122222222222 233457778 79999999999999988


Q ss_pred             ceeeeEEEEEE
Q psy8666          79 AVSRNATLQVA   89 (124)
Q Consensus        79 ~~~~~~~l~v~   89 (124)
                      . ...+.|.|.
T Consensus       180 ~-~~~~~l~V~  189 (190)
T 2wv3_A          180 A-SVSTVLRVR  189 (190)
T ss_dssp             E-EEEEEEEEE
T ss_pred             c-eeEEEEEEE
Confidence            7 556666654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.28  E-value=2.8e-11  Score=79.40  Aligned_cols=92  Identities=17%  Similarity=0.257  Sum_probs=66.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc--cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL--PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|+|..+.....   ......  ..+.   ...|..++..|.|.|.|.+.|..|..
T Consensus       223 ~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~---~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~  296 (395)
T 1bih_A          223 MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPE---DRITRHNRTSGK---RLLFKTTLPEDEGVYTCEVDNGVGKP  296 (395)
T ss_dssp             EEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTT---SSEESCSSSTTS---EEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred             EEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCc---eeEEEEecCCCc---eEEEccCChhhCEEEEEEEEeCCCCc
Confidence            356799999999999999999999999987753211   111111  1111   12456779999999999999999887


Q ss_pred             eeeeEEEEEEeeeeeeeecc
Q psy8666          80 VSRNATLQVAVVIFFISFFR   99 (124)
Q Consensus        80 ~~~~~~l~v~~~~~~~~~~~   99 (124)
                      .+..+.|.|..+|.+...+.
T Consensus       297 ~~~~~~l~V~~~P~~~~~~~  316 (395)
T 1bih_A          297 QKHSLKLTVVSAPKYEQKPE  316 (395)
T ss_dssp             EEEEEEEEEEEEEEEEECCC
T ss_pred             eEEEEEEEEEcCCccccCCC
Confidence            55588999988887765443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.27  E-value=4.8e-11  Score=72.05  Aligned_cols=91  Identities=60%  Similarity=1.016  Sum_probs=63.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEE-EEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFL-RVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|++++..+................+.+.+. ..+..++..|.|.|.|.+.|..+...
T Consensus        20 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~   99 (212)
T 2v9r_A           20 IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV   99 (212)
T ss_dssp             EECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEE
T ss_pred             EEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCcee
Confidence            46789999999999999999999999998876432211222333444444322 22345678999999999999887654


Q ss_pred             eeeEEEEEEeee
Q psy8666          81 SRNATLQVAVVI   92 (124)
Q Consensus        81 ~~~~~l~v~~~~   92 (124)
                      +....|.|...+
T Consensus       100 ~~~~~l~V~~~~  111 (212)
T 2v9r_A          100 SHDASLEVAILR  111 (212)
T ss_dssp             CCCEEEEECEEC
T ss_pred             ecceEEEEEecc
Confidence            556777776543

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=4.5e-11  Score=66.21  Aligned_cols=85  Identities=16%  Similarity=0.193  Sum_probs=57.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCC-----CCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD-----AKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+.+|+.+.|.|.+.+  .|.+.|+|||..+......     ...+......+. .....|..++.+|.|.|.|...+. 
T Consensus        19 ~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~-~~~L~I~~v~~~D~G~Y~~~~~~~-   94 (112)
T 2e6q_A           19 QVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGL-QHRLILHAVKHQDSGALVGFSCPG-   94 (112)
T ss_dssp             EEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTT-EEEEEEESCCSTTCSEEEEEEETT-
T ss_pred             EEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCc-EEEEEECCCCHHHCccEEEEEECC-
Confidence            4678999999999987  7789999999988643100     000333333343 334567888999999997755432 


Q ss_pred             ccceeeeEEEEEEeeee
Q psy8666          77 GTAVSRNATLQVAVVIF   93 (124)
Q Consensus        77 ~~~~~~~~~l~v~~~~~   93 (124)
                        . .....|.|..+|.
T Consensus        95 --~-~ssA~L~V~~~p~  108 (112)
T 2e6q_A           95 --V-QDSAALTIQESSG  108 (112)
T ss_dssp             --E-EEEEEEEEECSSC
T ss_pred             --e-eEEEEEEEeCCCc
Confidence              2 3477888877664

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.26  E-value=3.3e-11  Score=76.11  Aligned_cols=82  Identities=32%  Similarity=0.577  Sum_probs=58.6

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+++|..+...... ...........   ...|..++.+|.|.|.|.+.|..|.. +.
T Consensus       208 ~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~-~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~  282 (291)
T 1qz1_A          208 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEED-DEKHIFSDDSS---ELTIRNVDKNDEAEYVCIAENKAGEQ-DA  282 (291)
T ss_dssp             TTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--C-CSSEEECTTSC---EEEECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             cccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCC-CcceEEcCCCc---EEEEEecChhcCEEEEEEEEeCCCce-EE
Confidence            356999999999999999999999999887643110 01222222222   12356678999999999999999987 56


Q ss_pred             eEEEEEE
Q psy8666          83 NATLQVA   89 (124)
Q Consensus        83 ~~~l~v~   89 (124)
                      .+.|.|.
T Consensus       283 ~~~l~V~  289 (291)
T 1qz1_A          283 SIHLKVF  289 (291)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7777764

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.26  E-value=2.1e-10  Score=72.48  Aligned_cols=89  Identities=20%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccC--CcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPT--GSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|++++......   ..........  ........|..++.+|.|.|.|.+.|..|..
T Consensus       192 ~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  268 (289)
T 3mjg_X          192 VVRQGENITLMCIVIGNEVVNFEWTYPRKESGRL---VEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH  268 (289)
T ss_dssp             EEETTSCEEEEEEEESCSSBEEEEECTTSSSSCC---CCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTE
T ss_pred             eeEcCCCEEEEEEECCCCCcceEEEcCCccCCCc---ccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCc
Confidence            4678999999999999999999999876543211   0011111111  2233445667889999999999999999988


Q ss_pred             eeeeEEEEEEeeeee
Q psy8666          80 VSRNATLQVAVVIFF   94 (124)
Q Consensus        80 ~~~~~~l~v~~~~~~   94 (124)
                       .....|.|...+..
T Consensus       269 -~~~~~l~v~~~~~~  282 (289)
T 3mjg_X          269 -QDEKAINITVVESG  282 (289)
T ss_dssp             -EEEEEEEEEEEC--
T ss_pred             -eeEEEEEEEEEecC
Confidence             66888888877654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.26  E-value=1.7e-11  Score=73.99  Aligned_cols=81  Identities=21%  Similarity=0.351  Sum_probs=59.4

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccC-CcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPT-GSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.+.| |.+.|++++..+...     ........ ..+    .|..++..|.|.|.|.+.|..|...+
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~-----~~~~~~~~~~~L----~i~~v~~~d~G~Y~C~a~N~~g~~~s  191 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT-----ERMTLSQNNSIL----RIDPIKREDAGEYQCEISNPVSVRRS  191 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC-----SSEEEETTTTEE----EESSCCGGGCEEEEEEEECTTCCEEC
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC-----CCeEEcCCCCEE----EEeccCHHhCeEEEEEEecCCCcccC
Confidence            35689999999998866 899999999887632     12222222 333    35666999999999999999999888


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..++.
T Consensus       192 ~~~~l~v~~~~~  203 (208)
T 3r4d_A          192 NSIKLDIIFDPH  203 (208)
T ss_dssp             CCEEECCC----
T ss_pred             CceeeeEEeCCc
Confidence            888888877664

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.26  E-value=7.9e-11  Score=70.29  Aligned_cols=80  Identities=20%  Similarity=0.319  Sum_probs=57.9

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc-cCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE-QDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.+.|.|.+.|++++..+...     ........... ....|..+.. .|.|.|.|.+.|..|.. .
T Consensus       115 ~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-----~~~~~~~~~~~-~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~  187 (197)
T 3lcy_A          115 GAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS-----ENITIENTEHY-THLVMKNVQRKTHAGKYKVQLSNVFGTV-D  187 (197)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEECCCC-----SSEEEEECSSE-EEEEESSCCHHHHCEEEEEEEECSSCEE-E
T ss_pred             ecCCCeEEEEEEEeeeeCCeeEEeECCEECCCC-----CceEEEEcCCE-EEEEEccccchhhCceEEEEEEcCcCce-E
Confidence            467999999999999999999999999877632     12222222222 2234566664 89999999999999887 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus       188 ~~~~l~V~  195 (197)
T 3lcy_A          188 AILDVEIQ  195 (197)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            56666664

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=4.2e-11  Score=64.92  Aligned_cols=79  Identities=27%  Similarity=0.416  Sum_probs=55.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+. .|.|.+.|+|++..+...     ........+.. ....|..++..|.|.|.|.+.+.     .
T Consensus        22 ~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~-----~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~~~-----~   89 (102)
T 2eo1_A           22 QAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSS-----SKVRVEAVGCT-RRLVVQQAGQAEAGEYSCEAGGQ-----Q   89 (102)
T ss_dssp             EEETTCCEEECCBCS-CSSSCCEEEETTEECCCC-----SSEEEEEETTE-EEEEETTCCTTTCSCEEEEETTE-----E
T ss_pred             EEeCCCcEEEEEEec-CCCCceEEEECCEECCCC-----CCEEEEEcCCE-EEEEECCCCcccCEEEEEEcCCC-----c
Confidence            467899999999997 788999999999887532     12222222222 22356788999999999988542     3


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|..++
T Consensus        90 ~~~~l~V~~p~  100 (102)
T 2eo1_A           90 LSFRLQVAGQC  100 (102)
T ss_dssp             CCEEEEEESCC
T ss_pred             EEEEEEEeCCC
Confidence            45677776654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.26  E-value=1.3e-10  Score=74.09  Aligned_cols=84  Identities=25%  Similarity=0.470  Sum_probs=55.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc-cCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE-QDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.|.+.|+|+|..+...    .........+... ...|..++. .|.|.|.|.+.|..|.. 
T Consensus        17 ~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~----~~~~~~~~~~~~~-~L~i~~~~~~~D~G~Y~C~a~n~~g~~-   90 (304)
T 2yd9_A           17 IGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ----RFETIEFDESAGA-VLRIQPLRTPRDENVYECVAQNSVGEI-   90 (304)
T ss_dssp             EEETTSCEEEEEEEECSSCCEEEEC-------CT----TEEEEEETTTTEE-EEEECSCCTTTTCSEEEEEEECSSCEE-
T ss_pred             EecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC----ceEEEEecCCCce-EEEEecccccCCCeEEEEEEECCCCeE-
Confidence            4678999999999999999999999999876421    1111122333222 234567787 99999999999998875 


Q ss_pred             eeeEEEEEEee
Q psy8666          81 SRNATLQVAVV   91 (124)
Q Consensus        81 ~~~~~l~v~~~   91 (124)
                      +..+.|.|...
T Consensus        91 ~~~~~l~V~~~  101 (304)
T 2yd9_A           91 TVHAKLTVLRE  101 (304)
T ss_dssp             CCEEEEEEECG
T ss_pred             EEEEEEEEecc
Confidence            56788888765

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.26  E-value=4.8e-11  Score=70.88  Aligned_cols=76  Identities=36%  Similarity=0.734  Sum_probs=56.5

Q ss_pred             ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      ..|+.+.|.|.+.+.|.|.+.|+++|..+...     ...... ....+    .|..++.+|.|.|.|.+.|..|.. ..
T Consensus       111 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~-----~~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~n~~g~~-~~  180 (189)
T 2v5t_A          111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-----EKYILKGSNTEL----TVRNIINSDGGPYVCRATNKAGED-EK  180 (189)
T ss_dssp             TSCCCEEEECEEEEESCCEEEEEETTEECCCS-----SSEEEETTTTEE----EECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             cCCCcEEEEEEEccCCCCeEEEEECCEECcCC-----CcEEEecCCCEE----EEcCCChhhCeeEEEEEEeCCCce-eE
Confidence            46999999999999999999999999877632     122222 22333    345668999999999999999887 45


Q ss_pred             eEEEEEE
Q psy8666          83 NATLQVA   89 (124)
Q Consensus        83 ~~~l~v~   89 (124)
                      .+.|.|.
T Consensus       181 ~~~l~V~  187 (189)
T 2v5t_A          181 QAFLQVF  187 (189)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6666654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.25  E-value=2.7e-11  Score=72.32  Aligned_cols=82  Identities=20%  Similarity=0.323  Sum_probs=60.2

Q ss_pred             Eec-CCCEEEEEeeeccCC--CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           3 VAK-NEPVTLNCKAEGKPE--PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         3 ~~~-G~~~~l~C~~~~~p~--p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +.+ |+.+.|.|.+.+.|.  +.+.|+|++..+.....       ....    ....|..++..|.|.|.|.+.|. +..
T Consensus        14 v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~-------~~~~----~~L~i~~~~~~d~G~Y~C~~~n~-~~~   81 (190)
T 2wv3_A           14 IRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-------NASN----MEYRINKPRAEDSGEYHCVYHFV-SAP   81 (190)
T ss_dssp             CCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCB-------CCSE----EEEEESSCCGGGCEEEEEEEEET-TEE
T ss_pred             EccCCceEEEEEEeccCCCCceEEEEEECCEECcccce-------Eecc----EEEEEecCCcccCEEEEEEEEeC-Ccc
Confidence            344 999999999988876  78999999987763210       0011    22345777999999999999998 655


Q ss_pred             eeeeEEEEEEeeeeeeee
Q psy8666          80 VSRNATLQVAVVIFFISF   97 (124)
Q Consensus        80 ~~~~~~l~v~~~~~~~~~   97 (124)
                       +..+.|.|..+|.+...
T Consensus        82 -~~~~~l~V~~~p~~~~~   98 (190)
T 2wv3_A           82 -KANATIEVKAAPDITGH   98 (190)
T ss_dssp             -EEEEEEEEECCCEEEEE
T ss_pred             -cccEEEEEecCCccccc
Confidence             66788888887766543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.25  E-value=6.1e-11  Score=77.96  Aligned_cols=86  Identities=27%  Similarity=0.539  Sum_probs=65.7

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+|++..+...     ..........+    .|..++..|.|.|.|.+.|..|.. +.
T Consensus       234 ~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~n~~g~~-~~  303 (404)
T 3p3y_A          234 VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD-----KAKFENFNKAL----RITNVSEEDSGEYFCLASNKMGSI-RH  303 (404)
T ss_dssp             EETTSCEEEECCBCCSSCCEEEEEETTBCCCTT-----TEEEEGGGTEE----EESSCCGGGCEEEEEEEECSSCEE-EE
T ss_pred             EecCCCEEEEEEECCCCCCcEEEEECCEECCCC-----cccccccCceE----EEccCCHhHCEEEEEEEEeCCCcE-EE
Confidence            567999999999999999999999999876532     12222233333    356669999999999999999886 66


Q ss_pred             eEEEEEEeeeeeeeec
Q psy8666          83 NATLQVAVVIFFISFF   98 (124)
Q Consensus        83 ~~~l~v~~~~~~~~~~   98 (124)
                      .+.|.|..+|.+...+
T Consensus       304 ~~~l~V~~~p~~~~~~  319 (404)
T 3p3y_A          304 TISVRVKAAPYWLDEP  319 (404)
T ss_dssp             EEEEEEEEEEEEEECC
T ss_pred             EEEEEEeCCCeeeccC
Confidence            8888888887665443

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.24  E-value=2.6e-11  Score=76.61  Aligned_cols=80  Identities=35%  Similarity=0.689  Sum_probs=57.8

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+++|..+...     ....... ...+    .|..+...|.|.|.|.+.|..|.. .
T Consensus       206 ~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-----~~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~N~~G~~-~  275 (291)
T 2wim_A          206 AERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-----EKYILKGSNTEL----TVRNIINSDGGPYVCRATNKAGED-E  275 (291)
T ss_dssp             SSSCCEEEEECBCCCBSCCEEEEEETTEECCCT-----TTEEECSTTCEE----EEESCCSTTCEEEEEEEEETTEEE-E
T ss_pred             ecCCCeEEEEEEeecCCCCeEEEEECCEECcCC-----ccEEEcCCccEE----EEeeCCcccCEEEEEEEEECCCce-e
Confidence            356899999999999999999999999877632     1222222 2233    345668999999999999999988 5


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|..++
T Consensus       276 ~~~~l~v~~~~  286 (291)
T 2wim_A          276 KQAFLQVFVQH  286 (291)
T ss_dssp             EEEEEEC----
T ss_pred             eeEEEEEEEec
Confidence            67777776654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.24  E-value=1.2e-10  Score=70.83  Aligned_cols=88  Identities=18%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeCCEEeeccCCCCCc-eEEEcc-C----CcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKDGELVETSKSDAKS-QRVILP-T----GSLFFLRVVHGKKEQDGGVYWCLAR   73 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~g~~~~~~~~~~~~-~~~~~~-~----~~~~~~~~i~~~~~~d~g~y~C~~~   73 (124)
                      .+..|+.+.|.|.+.+.|.  +.+.|++++..+....    . ...... .    ........|.+++.+|.|.|.|.+.
T Consensus       116 ~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  191 (213)
T 2x1w_L          116 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK----LVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS  191 (213)
T ss_dssp             EEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEE----EEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEE----EeccccccccCccceeeeEEEEECCCCcccCEEEEEEEe
Confidence            5678999999999988653  4799999887533110    0 000000 0    1122345678889999999999999


Q ss_pred             eCCccceeeeEEEEEEeeeee
Q psy8666          74 NSVGTAVSRNATLQVAVVIFF   94 (124)
Q Consensus        74 ~~~~~~~~~~~~l~v~~~~~~   94 (124)
                      |..|.. +..+.|.|...|.+
T Consensus       192 N~~g~~-~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          192 SGLMTK-KNSTFVRVHEDPIE  211 (213)
T ss_dssp             CSSCEE-EEEEEEEEEC----
T ss_pred             cCCCcE-EEEEEEEEeccccc
Confidence            999887 67888888877653

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.24  E-value=3.4e-11  Score=68.72  Aligned_cols=78  Identities=26%  Similarity=0.327  Sum_probs=52.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCC---CC--CceEEE--ccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKS---DA--KSQRVI--LPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~---~~--~~~~~~--~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++..+.....   ..  ......  ...........|.+++.+|.|.|.|.+.|
T Consensus        32 ~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  111 (137)
T 3qr2_A           32 QRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN  111 (137)
T ss_dssp             EEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCEEEEEEEEe
Confidence            467899999999999999999999997654321100   00  001111  01111223445678899999999999999


Q ss_pred             CCccc
Q psy8666          75 SVGTA   79 (124)
Q Consensus        75 ~~~~~   79 (124)
                      ..|..
T Consensus       112 ~~G~~  116 (137)
T 3qr2_A          112 DPDRN  116 (137)
T ss_dssp             CTTSS
T ss_pred             cCCcc
Confidence            98876

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.24  E-value=2.1e-11  Score=80.24  Aligned_cols=80  Identities=31%  Similarity=0.560  Sum_probs=60.4

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+++|..+...     ..........+    .|..+..+|.|.|.|.+.|..|.. ..
T Consensus       324 ~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~-----~~~~~~~~~~L----~i~~v~~~d~G~Y~C~a~N~~G~~-~~  393 (403)
T 3laf_A          324 AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS-----DYFQIVGGSNL----RILGVVKSDEGFYQCVAENEAGNA-QS  393 (403)
T ss_dssp             CCTTCCEEECCEEEEESCCEEEEEETTEECCCS-----SSEEEETTTEE----EESSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             EecCCeEEEEEEEeeccCCEEEEEECCEECCCC-----CcEEEecCccE----EEeccccccCEEEEEEEEcCCceE-EE
Confidence            457999999999999999999999999876532     12222333333    356668999999999999999988 56


Q ss_pred             eEEEEEEeee
Q psy8666          83 NATLQVAVVI   92 (124)
Q Consensus        83 ~~~l~v~~~~   92 (124)
                      .+.|.|..||
T Consensus       394 ~~~l~V~~P~  403 (403)
T 3laf_A          394 SAQLIVPKPA  403 (403)
T ss_dssp             EEEEECCCC-
T ss_pred             EEEEEEeCCC
Confidence            7777776553

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.24  E-value=1.2e-10  Score=68.88  Aligned_cols=75  Identities=13%  Similarity=0.313  Sum_probs=56.2

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.+++ .+.|+|+|..+...          .....+    .|..++.+|.|.|.|.+.|..+...
T Consensus        99 ~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~----------~~~~~L----~i~~v~~~d~G~Y~C~a~n~~~~~~  164 (175)
T 1fnl_A           99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF----------HHNSDF----HIPKATLKDSGSYFCRGLVGSKNVS  164 (175)
T ss_dssp             EEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE----------EECCCE----EESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC----------CCCCEE----EEcccChhhCeEEEEEEEcCCCCcc
Confidence            35689999999999877654 89999999876521          123344    3566699999999999999876655


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus       165 s~~~~l~V~~  174 (175)
T 1fnl_A          165 SETVNITITQ  174 (175)
T ss_dssp             CCCEEEEEEC
T ss_pred             CccEEEEEeC
Confidence            6677777654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.24  E-value=2.8e-10  Score=68.32  Aligned_cols=81  Identities=19%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc-cce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG-TAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~-~~~   80 (124)
                      .+..|+.+.|.|.+.+ +.+.+.|+|++..+...      .......... ....|..++.+|.|.|.|.+.|..+ ...
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~------~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   86 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD------RQNPLEPKNK-ARFSIPSMTEDYAGRYRCYYRSPVGWSQP   86 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE------EECCCSSSSE-EEEEESSCCGGGCEEEEEEEEETTEEBCC
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc------ccccccCCce-EEEEeccCCcccCceEEEEEeCCCcccCC
Confidence            3678999999999888 77899999998765421      0000011111 2234677899999999999999887 233


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus        87 s~~~~l~V~~   96 (196)
T 3p2t_A           87 SDPLELVMTG   96 (196)
T ss_dssp             CCCEEEEEEC
T ss_pred             CccEEEEecC
Confidence            5667777753

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.23  E-value=1.4e-10  Score=71.42  Aligned_cols=92  Identities=24%  Similarity=0.299  Sum_probs=59.2

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEe----CCEEeeccCCCCCce--EEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYK----DGELVETSKSDAKSQ--RVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k----~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +..|+.+.|.|.+.+.|.|.+.|++    ++..+..........  ..............|..++..|.|.|.|.+.|..
T Consensus       126 ~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~  205 (241)
T 3grw_A          126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI  205 (241)
T ss_dssp             CCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             ecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCc
Confidence            4568999999999999999999999    776554321111000  0111112223344567779999999999999999


Q ss_pred             ccceeeeEEEEEEeeeeee
Q psy8666          77 GTAVSRNATLQVAVVIFFI   95 (124)
Q Consensus        77 ~~~~~~~~~l~v~~~~~~~   95 (124)
                      |.. +..+.|.|..+|...
T Consensus       206 g~~-~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          206 GVA-EKAFWLSVHGPRAAE  223 (241)
T ss_dssp             CEE-EEEEEEEC-------
T ss_pred             ceE-EEEEEEEecCCCCCC
Confidence            988 668888888776544

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.23  E-value=9.4e-11  Score=71.16  Aligned_cols=78  Identities=13%  Similarity=0.283  Sum_probs=56.9

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+. |.+.+.|+|+|..+...          .....+    .|..++.+|.|.|.|.+.|..+...
T Consensus        99 ~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~----------~~~~~L----~i~~v~~~D~G~Y~C~a~n~~~~~~  164 (204)
T 3sgj_C           99 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF----------HHNSDF----YIPKATLKDSGSYFCRGLVGSKNVS  164 (204)
T ss_dssp             EEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE----------EECCCE----EESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc----------cCCceE----EECcCCcccCEEEEEEEEeCCCcee
Confidence            46689999999999665 56889999999876421          123333    3566699999999999999655545


Q ss_pred             eeeEEEEEEeeee
Q psy8666          81 SRNATLQVAVVIF   93 (124)
Q Consensus        81 ~~~~~l~v~~~~~   93 (124)
                      +..+.|.|..++.
T Consensus       165 s~~~~l~V~~~~~  177 (204)
T 3sgj_C          165 SETVQITITQGLA  177 (204)
T ss_dssp             CCCEEEEEEC---
T ss_pred             cCcEEEEEeCcCC
Confidence            7788888877654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.23  E-value=4.8e-11  Score=70.91  Aligned_cols=75  Identities=13%  Similarity=0.121  Sum_probs=57.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|++++..+.            .....+    .|..++.+|.|.|.|.+.|..+.. +
T Consensus       108 ~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~------------~~~~~L----~i~~v~~~d~G~Y~C~a~n~~~~~-~  170 (184)
T 2ny1_B          108 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------------QGGKTL----SVSQLELQDSGTWTCTVLQNQKKV-E  170 (184)
T ss_dssp             EEETTCCEEEEEECCTTCCCEEEEECTTSCEE------------EESSEE----EESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             eeecCCCEEEEEEcCCCCCCEEEEEeCCCccc------------cCceEE----EEecCCcCCCeEEEEEEEECCceE-E
Confidence            46789999999999888999999999875432            122333    356669999999999999987776 5


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|...|.
T Consensus       171 ~~~~l~V~~~p~  182 (184)
T 2ny1_B          171 FKIDIVVLAFQK  182 (184)
T ss_dssp             EEEEEEEECCCC
T ss_pred             EEEEEEEEecCC
Confidence            677777776553

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.23  E-value=1.1e-10  Score=74.66  Aligned_cols=86  Identities=14%  Similarity=0.241  Sum_probs=60.0

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCC------cEEEEEEEcCCCccC-CeEEEEEeEeC
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTG------SLFFLRVVHGKKEQD-GGVYWCLARNS   75 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~d-~g~y~C~~~~~   75 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+++|..+..........+......      .......|..++.+| .|.|.|.+.|.
T Consensus       221 ~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~  300 (315)
T 1itb_B          221 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT  300 (315)
T ss_dssp             CCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECT
T ss_pred             EeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecC
Confidence            56899999999999999999999999988764311100111111111      122344567889999 99999999999


Q ss_pred             CccceeeeEEEEEE
Q psy8666          76 VGTAVSRNATLQVA   89 (124)
Q Consensus        76 ~~~~~~~~~~l~v~   89 (124)
                      .|.. ...+.|.|.
T Consensus       301 ~G~~-~~~~~l~v~  313 (315)
T 1itb_B          301 HGID-AAYIQLIYP  313 (315)
T ss_dssp             TCCE-EEEEEEECC
T ss_pred             CCce-eEEEEEEec
Confidence            9988 456666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=1.2e-10  Score=75.72  Aligned_cols=84  Identities=17%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEcc----CCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILP----TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      ..|+.+.+.|.+.|.|.|.+.|+++|..+....   ........    .........|..++.+|.|.|.|.+.|..|..
T Consensus       259 ~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~  335 (347)
T 2ifg_A          259 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETS---FIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA  335 (347)
T ss_dssp             EESSSEEEEEEEEEESCCEEEEEETTEECCCCS---SEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ccCceEEEEEEeeecCCCcEEEEeCCEECCCCc---ceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCce
Confidence            468999999999999999999999998876321   01111111    11122234567779999999999999999987


Q ss_pred             eeeeEEEEEEee
Q psy8666          80 VSRNATLQVAVV   91 (124)
Q Consensus        80 ~~~~~~l~v~~~   91 (124)
                       +..+.|.|..+
T Consensus       336 -~~~~~l~V~~~  346 (347)
T 2ifg_A          336 -SASIMAAFMDN  346 (347)
T ss_dssp             -EEEEEECSCCC
T ss_pred             -eeEEEEEecCC
Confidence             55667766544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.22  E-value=3.1e-10  Score=68.15  Aligned_cols=81  Identities=19%  Similarity=0.237  Sum_probs=54.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc-e
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA-V   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~-~   80 (124)
                      .+.+|+++.|.|.+.+.|. .+.|+|++..+...      .......... ....|..++..|.|.|.|.+.|..+.. .
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~------~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   86 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWD------TQNPLEPKNK-ARFSIPSMTEHHAGRYRCYYYSPAGWSEP   86 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSE------EECCCSSTTE-EEEEESSCCGGGCEEEEEEEEETTEECBC
T ss_pred             cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcc------cccccCCccc-cEEEeccCChhHCeEEEEEEeCCCCcCCc
Confidence            4678999999999987665 89999998765421      0000001111 223467779999999999999987643 2


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus        87 s~~~~l~V~~   96 (196)
T 2d3v_A           87 SDPLELVVTG   96 (196)
T ss_dssp             CCCEEEEEEC
T ss_pred             CccEEEEecC
Confidence            4567777766

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.22  E-value=3e-11  Score=81.59  Aligned_cols=81  Identities=32%  Similarity=0.611  Sum_probs=59.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.+.|.+.|.|.|.+.|+|++..+....  ..........+.+    .|..++.+|.|.|.|.|.|..|.. +
T Consensus       396 ~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~L----~i~~v~~~d~G~Y~C~a~N~~g~~-~  468 (477)
T 2id5_A          396 FVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAK--SNGRLTVFPDGTL----EVRYAQVQDNGTYLCIAANAGGND-S  468 (477)
T ss_dssp             EEETTCCEEECCCEEEESCCEEEEECTTSCBC---------CEECTTSCE----EESSCCSTTCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCeEEEEEeccccCCCEEEEEECCccccccC--CCceEEeCCCCEE----EEeeCChHHCEEEEEEEEeCCCcE-E
Confidence            46789999999999999999999999987654211  1122223344444    456779999999999999999887 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.+.|.
T Consensus       469 ~~~~l~V~  476 (477)
T 2id5_A          469 MPAHLHVR  476 (477)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            56666663

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.22  E-value=5.8e-10  Score=67.87  Aligned_cols=69  Identities=12%  Similarity=0.120  Sum_probs=50.0

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+.+|+.+.|.|.+. +.|.|.+.|+|+|..+....   ...... ..........|.+++.+|.|.|.|.+.|
T Consensus        13 ~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~---~~~~~~-~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A           13 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP---KYKMHI-DRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             EECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSS---SCEEEE-CTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             EEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCC---CEEEEE-eCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            467899999999986 46999999999999886421   112112 2212233345788899999999999999

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.22  E-value=2e-11  Score=83.73  Aligned_cols=84  Identities=12%  Similarity=0.104  Sum_probs=62.7

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+|+|..+....     . .......+.    |..++.+|.|.|.|.+.|..|.. ..
T Consensus       338 v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~-----~-~~~~~~~L~----I~~v~~~D~G~YtC~A~N~~g~~-~~  406 (527)
T 3qs9_E          338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-----K-GLDNGYSIS----KFCNHKHQPGEYIFHAENDDAQF-TK  406 (527)
T ss_dssp             CCTTCCCCEEEEEEEESCCEEEEEETTEEEECBC-----C-BCSSSSEEE----EECCCTTCCSCEEEEEEETTEEE-EE
T ss_pred             EcCCCeEEEEEEEEecCCCEEEEEECCEECcCCc-----c-cccCCcEEE----EecCCcccCEEEEEEEEeCCCcE-EE
Confidence            4568999999999999999999999999886431     1 111223332    45569999999999999999987 55


Q ss_pred             eEEEEEEeeeeeeee
Q psy8666          83 NATLQVAVVIFFISF   97 (124)
Q Consensus        83 ~~~l~v~~~~~~~~~   97 (124)
                      .+.|.|..+|.+...
T Consensus       407 ~~~L~V~~~P~i~~~  421 (527)
T 3qs9_E          407 MFTLNIRRKPQVLAE  421 (527)
T ss_dssp             EEEEC--CCCEEEEC
T ss_pred             EEEEEEecCCeEEEe
Confidence            788999888876544

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.21  E-value=3.7e-10  Score=71.26  Aligned_cols=91  Identities=15%  Similarity=0.361  Sum_probs=62.0

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEe-CCEEeeccCCCCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYK-DGELVETSKSDAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k-~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+..|+.+.|.|.+.+.| .+.+.|++ +|..+....    ....... .... ....|..++..|.|.|.|.+.|..+.
T Consensus        13 ~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~----~~~~~~~~~~~~-~~L~i~~~~~~D~G~Y~C~~~n~~g~   87 (291)
T 1qz1_A           13 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ----QRISVVWNDDDS-STLTIYNANIDDAGIYKCVVTAEDGT   87 (291)
T ss_dssp             EEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSC----SSEEEEEEETTE-EEEEECSCCGGGCEEEEEEEECTTSC
T ss_pred             eEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCC----ceEEEEEcCCCe-EEEEEecCCCCCCEEEEEEEEcCCCC
Confidence            467899999999998876 68999999 776654211    1111111 1111 22345777999999999999998876


Q ss_pred             ceeeeEEEEEEeeeeeeee
Q psy8666          79 AVSRNATLQVAVVIFFISF   97 (124)
Q Consensus        79 ~~~~~~~l~v~~~~~~~~~   97 (124)
                      ..+..+.|.|..+|.+...
T Consensus        88 ~~~~~~~l~v~~~~~~~~~  106 (291)
T 1qz1_A           88 QSEATVNVKIFQKLMFKNA  106 (291)
T ss_dssp             EEEEEEEEEEECCSEEEEC
T ss_pred             eeEEEEEEEeeccccccCC
Confidence            5466777777766655433

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.21  E-value=2.2e-10  Score=75.34  Aligned_cols=87  Identities=22%  Similarity=0.470  Sum_probs=65.5

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|++++..+....    ..........+    .|..++..|.|.|.|.+.|..|.. +.
T Consensus       233 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~n~~g~~-~~  303 (403)
T 3laf_A          233 AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRS----KKYSLLGGSNL----LISNVTDDDSGTYTCVVTYKNENI-SA  303 (403)
T ss_dssp             EETTSCEEECCEEEEESCCEEEEEETTEECCCSS----SSEEEETTTEE----EECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred             ecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCC----ceEEECCccEE----EEeCCCHHHCEEEEEEEEcCCCce-EE
Confidence            4579999999999999999999999998765321    22222333333    356669999999999999998876 67


Q ss_pred             eEEEEEEeeeeeeeec
Q psy8666          83 NATLQVAVVIFFISFF   98 (124)
Q Consensus        83 ~~~l~v~~~~~~~~~~   98 (124)
                      .+.|.|..+|.+...+
T Consensus       304 ~~~l~V~~~p~~~~~~  319 (403)
T 3laf_A          304 SAELTVLVPPWFLNHP  319 (403)
T ss_dssp             EEEEEEEEEEEEEECC
T ss_pred             EEEEEEECCCcEeecC
Confidence            8888888887665443

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.20  E-value=8.5e-11  Score=76.95  Aligned_cols=77  Identities=29%  Similarity=0.542  Sum_probs=59.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|+|..+...     ... ....+.+    .|..+..+|.|.|.|.+.|..|.. .
T Consensus       305 ~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-----~~~-~~~~~~L----~i~~v~~~d~G~Y~C~a~N~~G~~-~  373 (382)
T 1cs6_A          305 EADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ-----NRI-EVSGGEL----RFSKLVLEDSGMYQCVAENKHGTV-Y  373 (382)
T ss_dssp             EEETTCCEEEECEEEEESCCEEEEEETTEECCCC-----SSE-EEETTEE----EESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEcCCCeEEEEEEeeeecCCEEEEEECCEECCCC-----ceE-EEECCEE----EECcCCcccCEEEEEEEEeCCCeE-E
Confidence            3567999999999999999999999999887632     111 2223333    456678999999999999999987 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus       374 ~~~~l~V~  381 (382)
T 1cs6_A          374 ASAELTVQ  381 (382)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            56777664

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.20  E-value=2.3e-10  Score=62.45  Aligned_cols=67  Identities=18%  Similarity=0.363  Sum_probs=48.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+..|+.+.|.|.+ +.|.+.+.|+|+|..+....    ........+.. ....|.+++.+|.|.|.|.+.+
T Consensus        27 ~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           27 QVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSG----SKYIFESIGAK-RTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             EEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCS----SSSEEEEETTE-EEEEECSCSSSSCEEEEEEETT
T ss_pred             EEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCC----CeEEEEecCCE-EEEEECCCCcccCEEEEEEECC
Confidence            46789999999999 68889999999998876420    11222223322 2345678899999999999844

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.20  E-value=7.6e-11  Score=69.69  Aligned_cols=78  Identities=21%  Similarity=0.309  Sum_probs=57.9

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+. +.|.+.+.|+|+|..+...          .....+    .|..++.+|.|.|.|.+.|..+...
T Consensus        96 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~----------~~~~~L----~i~~v~~~d~G~Y~C~a~n~~~~~~  161 (176)
T 1f2q_A           96 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----------YENHNI----SITNATVEDSGTYYCTGKVWQLDYE  161 (176)
T ss_dssp             EEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC----------CCSSEE----EESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee----------cCCCeE----EECCCCcccCEEEEEEEEeCCcceE
Confidence            356899999999994 5667799999999876421          112222    3566799999999999999765555


Q ss_pred             eeeEEEEEEeeee
Q psy8666          81 SRNATLQVAVVIF   93 (124)
Q Consensus        81 ~~~~~l~v~~~~~   93 (124)
                      +..+.|.|..+|.
T Consensus       162 s~~~~l~V~~~p~  174 (176)
T 1f2q_A          162 SEPLNITVIKAPR  174 (176)
T ss_dssp             CCCEEEEEECSCC
T ss_pred             ecCEEEEEecCCC
Confidence            6678888877653

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.20  E-value=2.8e-10  Score=78.79  Aligned_cols=80  Identities=24%  Similarity=0.358  Sum_probs=61.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+++.|.|.+.|.|.|.++|+|+++.+...     .+......+... ...|..+.+.|.|.|.|.+.|..|.. +
T Consensus       493 ~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s-----~~~~i~~~~~~~-~L~I~~~~~~D~G~Yt~~A~N~~G~~-~  565 (573)
T 3uto_A          493 EVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-----VKYMKRYNGNDY-GLTINRVKGDDKGEYTVRAKNSYGTK-E  565 (573)
T ss_dssp             EECTTSCEEEEEEEECSSCCEEEEEETTEECCSS-----SSEEEEEETTEE-EEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCcEEEEEEEEccCCCeEEEEECCEEcccC-----CcEEEEEcCCEE-EEEEcCCCcccCcEEEEEEEeCCCcE-E
Confidence            4678999999999999999999999999988643     222233333333 34567889999999999999999988 5


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus       566 ~~v~l~V  572 (573)
T 3uto_A          566 EIVFLNV  572 (573)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5666655

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.20  E-value=4.5e-10  Score=71.40  Aligned_cols=86  Identities=28%  Similarity=0.432  Sum_probs=62.2

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcC-CCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG-KKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.+.|.|.+.|++++..+...     .............+ .+.. ++..|.|.|.|.+.|..|.. .
T Consensus       116 ~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l-~i~~~~~~~d~G~Y~C~a~N~~G~~-~  188 (305)
T 2nzi_A          116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-----GHYQVIVTRSFTSL-VFPNGVERKDAGFYVVCAKNRFGID-Q  188 (305)
T ss_dssp             EETTCCEEEEEEEEEESCCEEEEEESSSBCCSS-----SSCEEEECSSEEEE-EETTCCCSTTCEEEEEEEEETTEEE-E
T ss_pred             ecCCCEEEEEEEECCCCCCEEEEEECCEECCCC-----CcEEEEEcCCceEE-EEecCCccCccEEEEEEEEeCCCce-e
Confidence            567999999999999999999999998766532     11122222222222 3455 78999999999999999987 5


Q ss_pred             eeEEEEEEeeeeee
Q psy8666          82 RNATLQVAVVIFFI   95 (124)
Q Consensus        82 ~~~~l~v~~~~~~~   95 (124)
                      ..+.|.|...|..+
T Consensus       189 ~~~~l~v~~~P~~p  202 (305)
T 2nzi_A          189 KTVELDVADVPDPP  202 (305)
T ss_dssp             EEEEEEEEBCCCCC
T ss_pred             eEEEEEEecCCCCC
Confidence            67788887665433

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.20  E-value=1.8e-10  Score=69.93  Aligned_cols=78  Identities=23%  Similarity=0.449  Sum_probs=57.5

Q ss_pred             EEecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.+. +.|+|+|..+...            ...+    .|..++..|.|.|.|.+.|...   
T Consensus        18 ~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~------------~~~L----~i~~v~~~D~G~Y~C~a~n~~~---   78 (204)
T 3sgj_C           18 RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------------ASSY----FIDAATVDDSGEYRCQTQLSTL---   78 (204)
T ss_dssp             EEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC------------SSEE----EESSCCGGGCEEEEEEETTSBC---
T ss_pred             EEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC------------ccEE----EEecccccCCEEEEEEeCCCcc---
Confidence            577899999999999888776 9999999876531            1222    3566799999999999987432   


Q ss_pred             eeeEEEEEEeeeeeeeec
Q psy8666          81 SRNATLQVAVVIFFISFF   98 (124)
Q Consensus        81 ~~~~~l~v~~~~~~~~~~   98 (124)
                      +..+.|.|...+.+...+
T Consensus        79 s~~~~l~V~~~p~~~~~~   96 (204)
T 3sgj_C           79 SDPVQLEVHIGWLLLQAP   96 (204)
T ss_dssp             CCCEEEEEECSSEEEECS
T ss_pred             cccEEEEEecCceEecCC
Confidence            446777777665444333

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.19  E-value=1.1e-10  Score=70.34  Aligned_cols=79  Identities=14%  Similarity=0.209  Sum_probs=54.1

Q ss_pred             ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeee
Q psy8666           4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRN   83 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~   83 (124)
                      ..|..+.+.|.+.+.|.|.+.|++++..+...     ................|..++..|.|.|.|.+.|..|.. ...
T Consensus       131 ~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~-----~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~  204 (218)
T 4frw_A          131 GQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS-----RSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQR  204 (218)
T ss_dssp             TCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE-----EEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEE
T ss_pred             eeccccceeeeccCCcCceEEEEECCcccccC-----ceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEE
Confidence            35777899999999999999999998776532     111111111222334566778999999999999998876 334


Q ss_pred             EEEEE
Q psy8666          84 ATLQV   88 (124)
Q Consensus        84 ~~l~v   88 (124)
                      +.+.+
T Consensus       205 ~t~~v  209 (218)
T 4frw_A          205 ITHIL  209 (218)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            44444

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.19  E-value=5.4e-11  Score=72.63  Aligned_cols=76  Identities=20%  Similarity=0.407  Sum_probs=59.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|++++..+...           ....    ..|..++..|.|.|.|.+.|..|...+
T Consensus       129 ~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~-----------~~~~----L~i~~v~~~d~G~Y~C~a~n~~g~~~s  193 (218)
T 3k0w_A          129 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----------TKKL----YMVPYVDLEHQGTYWCHVYNDRDSQDS  193 (218)
T ss_dssp             EECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-----------CSSE----EEESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred             eecCCCcEEEEEEecccCCCeEEEEECCEECCCC-----------CCCE----EEEeecChhcCEEEEEEEEcCCCCcee
Confidence            3567999999999999999999999999876532           1122    235677899999999999999888667


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|....
T Consensus       194 ~~~~l~V~~~~  204 (218)
T 3k0w_A          194 KKVEIIIDELN  204 (218)
T ss_dssp             CCEEEEECC--
T ss_pred             eeEEEEEeCCc
Confidence            78888886643

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.18  E-value=7.9e-11  Score=77.18  Aligned_cols=89  Identities=27%  Similarity=0.432  Sum_probs=61.7

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccC-CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK-SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+|++....... ...... .....+.+    .|..++..|.|.|.|.+.|..|.. +
T Consensus       224 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~L----~i~~v~~~d~G~Y~C~a~n~~g~~-~  297 (388)
T 2v5m_A          224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDR-VKQVSGTL----IIKDAVVEDSGKYLCVVNNSVGGE-S  297 (388)
T ss_dssp             EETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSS-EEEETTEE----EESSCCGGGCEEEEEEEECSSCEE-E
T ss_pred             EeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCc-eecccCEE----EECcCCHHHCeEEEEEEecCCCce-e
Confidence            4578999999999999999999999754321100 000111 11223333    456779999999999999999886 6


Q ss_pred             eeEEEEEEeeeeeeee
Q psy8666          82 RNATLQVAVVIFFISF   97 (124)
Q Consensus        82 ~~~~l~v~~~~~~~~~   97 (124)
                      ..+.|.|..+|.+...
T Consensus       298 ~~~~l~V~~~p~~~~~  313 (388)
T 2v5m_A          298 VETVLTVTAPLSAKID  313 (388)
T ss_dssp             EEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCccccC
Confidence            6888888887765443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.18  E-value=5.8e-10  Score=76.74  Aligned_cols=92  Identities=14%  Similarity=0.157  Sum_probs=63.7

Q ss_pred             EEecCCCEEEEEeee----ccCCCeEEEEeCCEEeeccCCCCC-ceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAE----GKPEPTIEWYKDGELVETSKSDAK-SQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~----~~p~p~v~w~k~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+..|+.+.|.|.+.    +.|.|.+.|+|+|..+........ ................|..++.+|.|.|.|.+.|..
T Consensus       453 ~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  532 (585)
T 2ocw_A          453 TAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH  532 (585)
T ss_pred             eEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCC
Confidence            467899999999986    667888999999987653211110 111111212222334567779999999999999999


Q ss_pred             ccceeeeEEEEEEeeee
Q psy8666          77 GTAVSRNATLQVAVVIF   93 (124)
Q Consensus        77 ~~~~~~~~~l~v~~~~~   93 (124)
                      |...+..+.|.|..+|.
T Consensus       533 G~~~~~~~~l~V~~~p~  549 (585)
T 2ocw_A          533 FYGETAAVYVAVEERKA  549 (585)
T ss_pred             CccEEEEEEEEEEeeee
Confidence            87766568888888773

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.18  E-value=2e-10  Score=62.79  Aligned_cols=78  Identities=22%  Similarity=0.373  Sum_probs=53.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.  |.+.|+|++..+...     ........+.. ....|.+++.+|.|.|.|.+.|.     .
T Consensus        19 ~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~-----~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~n~-----~   85 (108)
T 2dm7_A           19 EASEGATATLQCELSKV--APVEWKKGPETLRDG-----GRYSLKQDGTR-CELQIHDLSVADAGEYSCMCGQE-----R   85 (108)
T ss_dssp             EEETTSCEEEEEEBSSS--CCCEEESSSSBCCSS-----SSCEEEEETTE-EEEEESSCCTTTCSEEEEEETTE-----E
T ss_pred             EEeCCCcEEEEEEeCCC--CeeEEEECCEECCCC-----CCEEEEecCCE-EEEEECCCCcccCEEEEEEEcCC-----E
Confidence            57789999999998764  789999998766532     12222223332 22346788999999999998542     4


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ....|.|..+|
T Consensus        86 ~~~~l~V~~~p   96 (108)
T 2dm7_A           86 TSATLTVRALP   96 (108)
T ss_dssp             EEEECEEECCC
T ss_pred             EEEEEEEecCC
Confidence            46677776644

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.18  E-value=4e-12  Score=81.12  Aligned_cols=79  Identities=23%  Similarity=0.378  Sum_probs=59.3

Q ss_pred             EecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.|.|.| .+.|+|++..+....        ......+   .+|..++..|.|.|.|.|.|..|.. +
T Consensus       224 ~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~--------~~~~~~~---l~i~~v~~~d~G~Y~C~A~N~~G~~-~  291 (308)
T 4fom_A          224 FVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL--------LASDNTL---HFVHPLTFNYSGVYICKVTNSLGQR-S  291 (308)
T ss_dssp             ETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSC--------BCSTTEE---ECCSCCCSCCCSEEEEEEEETTEEE-E
T ss_pred             eeccccEEEEEEEecCCCCcEEEEEECCeECCCcE--------EEcCCeE---EEECCCChhhCEEEEEEEEeCCCcE-E
Confidence            4568889999999999988 599999887665321        1112222   2356678999999999999999987 6


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..+|+
T Consensus       292 ~~~~l~V~~~P~  303 (308)
T 4fom_A          292 DQKVIYISDPPH  303 (308)
T ss_dssp             EEEECCEECCC-
T ss_pred             EEEEEEEEcCCC
Confidence            688888888775

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.18  E-value=5.3e-10  Score=67.71  Aligned_cols=81  Identities=12%  Similarity=0.182  Sum_probs=56.8

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +.+|+.+.|.|.+.|.|.|.+.|+++.....      ......  .+.... ..|.+++.+|.|.|.|.+.|..+.. +.
T Consensus        13 ~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~------~~~~~~--~~~~~~-L~I~~v~~~D~G~Y~C~a~n~~~~~-~~   82 (202)
T 1vca_A           13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPL------NGKVTN--EGTTST-LTMNPVSFGNEHSYLCTATCESRKL-EK   82 (202)
T ss_dssp             EETTSCEEEEEEEESCSSCEEEEEETTCCCC------SSEEEE--ETTEEE-EEESSCCGGGCSEEEEEEEETTEEE-EE
T ss_pred             EcCCCcEEEEEeecCCCCCeEEEECCCCCCc------cceEEE--cCCccE-EEECcCCHHHCEEEEEEEEECCceE-ee
Confidence            4589999999999999999999998432110      011111  111111 3467789999999999999988765 66


Q ss_pred             eEEEEEEeeee
Q psy8666          83 NATLQVAVVIF   93 (124)
Q Consensus        83 ~~~l~v~~~~~   93 (124)
                      .+.|.|..+|.
T Consensus        83 ~~~l~V~~~p~   93 (202)
T 1vca_A           83 GIQVEIYSFPK   93 (202)
T ss_dssp             EEEEEEEBCCS
T ss_pred             EEEEEEEeCCC
Confidence            78888877654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.18  E-value=1.7e-10  Score=70.44  Aligned_cols=84  Identities=26%  Similarity=0.457  Sum_probs=60.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|++..+....... ..........+    .|..++..|.|.|.|.+.|..+.. .
T Consensus        30 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~L----~i~~~~~~d~G~Y~C~~~n~~~~~-~  103 (231)
T 3ojm_B           30 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSL----IMESVVPSDKGNYTCVVENEYGSI-N  103 (231)
T ss_dssp             EEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTT-CCEEEGGGTEE----EECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEccCCCEEEEEecccCCCCeEEEEECCcccccccccc-ceeeecCcceE----EEecCCcccCEEEEEEEecccCcc-c
Confidence            46789999999999999999999999998876432110 11122222333    356669999999999999988776 5


Q ss_pred             eeEEEEEEee
Q psy8666          82 RNATLQVAVV   91 (124)
Q Consensus        82 ~~~~l~v~~~   91 (124)
                      ....|.|...
T Consensus       104 ~~~~l~V~~~  113 (231)
T 3ojm_B          104 HTYHLDVVER  113 (231)
T ss_dssp             EEEEEEEECC
T ss_pred             ccEEEEEEcC
Confidence            5677777653

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.18  E-value=2.2e-10  Score=69.91  Aligned_cols=93  Identities=22%  Similarity=0.226  Sum_probs=60.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe----CCEEeeccCCCCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK----DGELVETSKSDAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k----~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|++    +|..+............... .........|..++..|.|.|.|.+.|..
T Consensus       129 ~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  208 (231)
T 3ojm_B          129 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYI  208 (231)
T ss_dssp             EEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEecc
Confidence            35679999999999999999999999    77655432110000000000 00000112356668999999999999999


Q ss_pred             ccceeeeEEEEEEeeeeee
Q psy8666          77 GTAVSRNATLQVAVVIFFI   95 (124)
Q Consensus        77 ~~~~~~~~~l~v~~~~~~~   95 (124)
                      |.. +..+.|.|..+|..+
T Consensus       209 g~~-~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          209 GQA-NQSAWLTVLPKQQAP  226 (231)
T ss_dssp             EEE-EEEEEEEEECCC---
T ss_pred             ceE-eeEEEEEEecCCCCC
Confidence            987 678888887766543

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.17  E-value=9.7e-11  Score=76.86  Aligned_cols=75  Identities=29%  Similarity=0.539  Sum_probs=57.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+++|..+...      ... ...+.    ..|..++.+|.|.|.|.+.|..|.. .
T Consensus       320 ~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~------~~~-~~~~~----L~i~~~~~~d~G~Y~C~a~N~~G~~-~  387 (395)
T 1bih_A          320 VVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG------RAT-VTDSG----LVIKGVKNGDKGYYGCRATNEHGDK-Y  387 (395)
T ss_dssp             EECTTSCEEEECEEEEESCCCCEEEETTEECCSS------SEE-EETTE----EEESSCCSTTCEEEEEEEEETTEEE-E
T ss_pred             EecCCCeEEEEEEECcccCCeeEEEECCEECCCC------ceE-EECCE----EEEeeCCcccCEEEEEEEEccCCCc-e
Confidence            3568999999999999999999999999887531      221 22333    3456779999999999999999987 4


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus       388 ~~~~l~V  394 (395)
T 1bih_A          388 FETLVQV  394 (395)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5666654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.17  E-value=2.9e-10  Score=67.45  Aligned_cols=87  Identities=21%  Similarity=0.370  Sum_probs=57.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc-e
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA-V   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~-~   80 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|++++..+...   ..........+.+    .|..++..|.|.|.|.+.+..+.. .
T Consensus        13 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~~~~L----~i~~~~~~d~G~Y~C~~~~~~~~~~~   85 (189)
T 2v5t_A           13 EFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI---SDNRFAMLANNNL----QILNINKSDEGIYRCEGRVEARGEID   85 (189)
T ss_dssp             EEETTSCEEECCEEECSSCCEEEEEC-----CBC---CCTTEEECTTSCE----EETTCCGGGCEEEEEEEEETTTTEEE
T ss_pred             EEeCCCcEEEEEEEcCCCCCEEEEEECCccceec---cCCeEEEecCCCE----EEeeCCHhHCcEEEEEEEEcCCCceE
Confidence            4678999999999999899999999998766532   1122233344444    356669999999999999986433 2


Q ss_pred             eeeEEEEEEeeeeee
Q psy8666          81 SRNATLQVAVVIFFI   95 (124)
Q Consensus        81 ~~~~~l~v~~~~~~~   95 (124)
                      ...+.+.+..+|.+.
T Consensus        86 ~~~~~l~v~~~p~~~  100 (189)
T 2v5t_A           86 FRDIIVIVNVPPAIS  100 (189)
T ss_dssp             EEEEEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCCcc
Confidence            345566666666544

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=99.17  E-value=1.9e-09  Score=58.01  Aligned_cols=84  Identities=23%  Similarity=0.319  Sum_probs=59.7

Q ss_pred             EEecCCCEEEEEeeec-cCCCeEEEEeCC----EEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDG----ELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+..|+.+.|.|++.+ .+.|.++|-|-+    ..+..   .. .......+.+.+++. +..+-..|.|.|+|.+....
T Consensus        22 sv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~---~~-q~w~E~~N~s~fvLh-f~~V~~sDsGsYRCsAn~~s   96 (120)
T 2aw2_A           22 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLED---RQ-TSWKEEKNISFFILH-FEPVLPNDNGSYRCSANFQS   96 (120)
T ss_dssp             EEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCS---SC-EEEEECSSCEEEEEE-ESSCCGGGCEEEEEEEEETT
T ss_pred             eEecCCeEEEEccEEeccCCCceEEEecCCceEEECcc---cc-ccceecCCeeEEEEE-EeeeeEcCCcceEEEeeCCC
Confidence            4678999999999987 699999999844    23321   11 111222333344444 47778999999999999999


Q ss_pred             ccceeeeEEEEEEe
Q psy8666          77 GTAVSRNATLQVAV   90 (124)
Q Consensus        77 ~~~~~~~~~l~v~~   90 (124)
                      |..++....+.|..
T Consensus        97 g~ieSHsvtI~Vt~  110 (120)
T 2aw2_A           97 NLIESHSTTLYVTD  110 (120)
T ss_dssp             EEEECCCEEEEEEC
T ss_pred             CcEEeeEEEEEEEe
Confidence            98878887777754

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.17  E-value=4e-10  Score=71.78  Aligned_cols=81  Identities=37%  Similarity=0.607  Sum_probs=58.3

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+|++..+.....  .........+.+    .|..++..|.|.|.|.+.|..|...+.
T Consensus       120 v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~--~~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~n~~g~~~~~  193 (304)
T 2yd9_A          120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSAS--NGRIKQLRSGAL----QIESSEETDQGKYECVATNSAGVRYSS  193 (304)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEETTEECCGGGG--TTSEEECTTSCE----EECSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             EeCCCeEEEEEECccCCCCeEEEEECCEECcCCCC--cceEEeCCCeEE----EEccCCcccCEEEEEEEEeCCCCEEec
Confidence            56799999999999999999999999988764311  112223334444    345668999999999999998876443


Q ss_pred             eEEEEEE
Q psy8666          83 NATLQVA   89 (124)
Q Consensus        83 ~~~l~v~   89 (124)
                      ...+.|.
T Consensus       194 ~~~l~v~  200 (304)
T 2yd9_A          194 PANLYVR  200 (304)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            3555553

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.16  E-value=1.6e-10  Score=68.75  Aligned_cols=70  Identities=26%  Similarity=0.426  Sum_probs=52.6

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +..|+.+.|.|.+.+.|.|.+.|++++..+....   .........+.+    .|..++..|.|.|.|.+.|..+..
T Consensus       112 ~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~n~~~~~  181 (191)
T 1epf_A          112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK---DVRFIVLSNNYL----QIRGIKKTDEGTYRCEGRILARGE  181 (191)
T ss_dssp             CCTTSCEEECCEEECSSCCEEEEEETTEEGGGGC---CTTEEECTTSCE----EETTCCGGGCEEEEEEEEEGGGTE
T ss_pred             ecCCCeEEEEEEECCCCCCEEEEEECCEEeeccC---CceEEEecCCeE----EECCCChhhCEEEEEEEEEeccee
Confidence            4679999999999999999999999998875321   122233344444    456679999999999999987543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.16  E-value=3.3e-10  Score=66.89  Aligned_cols=72  Identities=25%  Similarity=0.481  Sum_probs=53.7

Q ss_pred             EEecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.+. +.|+|++..+..            ....+    .|..++..|.|.|.|.+.|..+   
T Consensus        18 ~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~------------~~~~L----~i~~~~~~d~G~Y~C~~~n~~~---   78 (175)
T 1fnl_A           18 SVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------------QASSY----FIDAATVNDSGEYRCQTNLSTL---   78 (175)
T ss_dssp             EEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------------SCSEE----EESSCCGGGCEEEEEECSSSCC---
T ss_pred             eeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC------------CceEE----EEeCCCcccCEEEEEEeeCCcc---
Confidence            577899999999999888776 789999987652            12222    3566699999999999998544   


Q ss_pred             eeeEEEEEEeee
Q psy8666          81 SRNATLQVAVVI   92 (124)
Q Consensus        81 ~~~~~l~v~~~~   92 (124)
                      +..+.|.|..++
T Consensus        79 s~~~~l~V~~~~   90 (175)
T 1fnl_A           79 SDPVQLEVHIGW   90 (175)
T ss_dssp             CCCEEEEEECSS
T ss_pred             cccEEEEEeCCC
Confidence            345677776443

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.16  E-value=1.4e-10  Score=70.89  Aligned_cols=103  Identities=15%  Similarity=0.109  Sum_probs=67.0

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+..|+++.|.|.+ +.|.|  .++|++....+.        ..... ...  ....|.+++.+|.|.|.|.+.|..+..
T Consensus        18 ~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~--------~~~~~-~~~--~~L~I~~v~~~d~G~Y~C~a~n~~~~~   85 (210)
T 1gsm_A           18 AVALGASRQLTCRL-ACADRGASVQWRGLDTSLG--------AVQSD-TGR--SVLTVRNASLSAAGTRVCVGSCGGRTF   85 (210)
T ss_dssp             EEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC--------CEEEE-SSE--EEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEeCCCCEEEEEEC-CCCCCCcceEEeecccccC--------cEEec-CCc--cEEEECccCcccCceEEEEEEeCCCce
Confidence            57789999999999 88877  999998542221        11111 111  122457779999999999999988775


Q ss_pred             eeeeEEEEEEeeeeeeeeccceehhhhhheeeeeecCcc
Q psy8666          80 VSRNATLQVAVVIFFISFFRFKLSAYLYDLFRGVVNKTN  118 (124)
Q Consensus        80 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (124)
                       ...+.|.|..+|.............-.. +.|.+.|..
T Consensus        86 -~~~~~ltV~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~  122 (210)
T 1gsm_A           86 -QHTVQLLVYAFPNQLTVSPAALVPGDPE-VACTAHKVT  122 (210)
T ss_dssp             -EEEEEEEEEBCCSEEEEESSSBCTTCCE-EEEEEEEEB
T ss_pred             -EEEEEEEEEecCCCcEEccceEEeCCce-EEEEeCCCC
Confidence             6788999988876543221111111112 777776654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.15  E-value=1.5e-10  Score=70.24  Aligned_cols=82  Identities=41%  Similarity=0.623  Sum_probs=58.2

Q ss_pred             EecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCC---CCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           3 VAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSD---AKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         3 ~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      +..|+.+.|.|.+ .+.|.|.+.|++++..+......   ..........+.+    .|..++.+|.|.|.|.+.|..|.
T Consensus       120 ~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~N~~G~  195 (217)
T 2vr9_A          120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNL----LISNVEPIDEGNYKCIAQNLVGT  195 (217)
T ss_dssp             ECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEE----EESSCCSTTCEEEEEEEEETTEE
T ss_pred             EcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcE----EEeeCCHHHCeEEEEEEEcccce
Confidence            5679999999998 89999999999999887632110   1112222233333    45667999999999999999998


Q ss_pred             ceeeeEEEEE
Q psy8666          79 AVSRNATLQV   88 (124)
Q Consensus        79 ~~~~~~~l~v   88 (124)
                      ..+....|.+
T Consensus       196 ~~~~~~~lv~  205 (217)
T 2vr9_A          196 RESSYAKLIV  205 (217)
T ss_dssp             EECCCEEEEE
T ss_pred             eccccEEEEE
Confidence            7554445544

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.15  E-value=7e-10  Score=66.73  Aligned_cols=86  Identities=16%  Similarity=0.146  Sum_probs=56.1

Q ss_pred             EEecCCCEEEEEeeeccCC-----CeEEEEeCCEEeeccCCCCCceEEEccC--CcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPE-----PTIEWYKDGELVETSKSDAKSQRVILPT--GSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~-----p~v~w~k~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+..|+.+.|.|.+.+.|.     +.+.|+|++......    ..+......  ........|.+++.+|.|.|.|.+.+
T Consensus        13 ~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~----~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   88 (202)
T 3bp6_B           13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQ----SERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVIC   88 (202)
T ss_dssp             EEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCB----CSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCccccc----CCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEe
Confidence            4678999999999988876     789999943332211    011111111  00112334677899999999999999


Q ss_pred             CCccceeeeEEEEEEeee
Q psy8666          75 SVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        75 ~~~~~~~~~~~l~v~~~~   92 (124)
                      ..+.. +..+.|.|..++
T Consensus        89 ~~~~~-~~~~~l~V~~~~  105 (202)
T 3bp6_B           89 GAAWD-YKYLTVKVKASY  105 (202)
T ss_dssp             TTEEE-EEEEEEEEEBCC
T ss_pred             CCCcc-eEEEEEEecCCC
Confidence            88766 567778777653

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.15  E-value=2.7e-10  Score=72.47  Aligned_cols=78  Identities=21%  Similarity=0.364  Sum_probs=57.0

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.|.| .+.|+|++..+....     ..... .+  .....|..++.+|.|.|.|.+.|..|.. 
T Consensus       232 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~-----~~~~~-~~--~~~L~I~~v~~~d~G~Y~C~a~N~~G~~-  302 (312)
T 2y23_A          232 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-----KHDFK-DG--ICTLLITEFSKKDAGIYEVILKDDRGKD-  302 (312)
T ss_dssp             EEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEEC-----CC-----C--EEEEEECSCSGGGCEEEEEEEESTTCCE-
T ss_pred             EEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCC-----cEEEE-CC--EEEEEECcCCHHHCEEEEEEEEcCCCce-
Confidence            45689999999999999988 999999999877321     11111 11  1234567789999999999999999987 


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      ...+.|.+
T Consensus       303 ~~~~~l~i  310 (312)
T 2y23_A          303 KSRLKLVD  310 (312)
T ss_dssp             EEEEEECS
T ss_pred             eeeeEEEe
Confidence            44555543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.15  E-value=2.5e-10  Score=66.85  Aligned_cols=73  Identities=18%  Similarity=0.326  Sum_probs=54.2

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+. +.|.+.+.|+|+|..+...          .....+    .|..++.+|.|.|.|.+.|..|...
T Consensus        96 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~----------~~~~~L----~i~~v~~~d~G~Y~C~a~n~~g~~~  161 (170)
T 3ry4_A           96 EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS----------HLDPTF----SIPQANHSHSGDYHCTGNIGYTLFS  161 (170)
T ss_dssp             EECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE----------SSCCEE----EESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eeecCCeEEEEEECCCCCCCceEEEEECCeEcccc----------CCCCeE----EEEeccccCCEEEEEEEEeCcCccc
Confidence            356799999999995 5566899999999876521          112222    3566689999999999999988755


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      +..+.|.|
T Consensus       162 s~~~~l~V  169 (170)
T 3ry4_A          162 SKPVTITV  169 (170)
T ss_dssp             CCCEEEEE
T ss_pred             cccEEEEE
Confidence            66666655

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.15  E-value=2.1e-10  Score=75.16  Aligned_cols=86  Identities=31%  Similarity=0.591  Sum_probs=61.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC------CeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD------GGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d------~g~y~C~~~~   74 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+| +|..+....    ........+.+.    |..++..|      .|.|.|.+.|
T Consensus        15 ~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~----~~~~~~~~~~L~----i~~~~~~d~~~~~d~G~Y~C~a~n   86 (388)
T 2v5m_A           15 DFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP----GLRQISSDGKLV----FPPFRAEDYRQEVHAQVYACLARN   86 (388)
T ss_dssp             EEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBT----TTBEECSTTEEE----ECCCCGGGCCHHHHEEEEEEEEEE
T ss_pred             EEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCC----CceEEcCCceEE----ecccChhhccccccCceEEEEEEc
Confidence            35689999999999999999999999 777655321    112233445443    45557776      9999999999


Q ss_pred             CCccceeeeEEEEEEeeeeee
Q psy8666          75 SVGTAVSRNATLQVAVVIFFI   95 (124)
Q Consensus        75 ~~~~~~~~~~~l~v~~~~~~~   95 (124)
                      ..|...+..+.+.+..+|.+.
T Consensus        87 ~~g~~~s~~~~v~v~~~p~~~  107 (388)
T 2v5m_A           87 QFGSIISRDVHVRAVVAQYYE  107 (388)
T ss_dssp             TTEEEECCCEEEEEECCCCCC
T ss_pred             cCCeEEecceEEEEccccccc
Confidence            988765567777776665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.15  E-value=1.5e-10  Score=75.84  Aligned_cols=82  Identities=20%  Similarity=0.302  Sum_probs=59.3

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      +.+..|+.+.+.|.+.+ |.|.+.|++++....... ....+... ..+.+    .|..++.+|.|.|.|.+.|..|.. 
T Consensus       256 v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~-~~~~r~~~-~~~~L----~I~~v~~~D~G~Y~C~a~N~~g~~-  327 (361)
T 2xot_A          256 WEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQ-GSNGSVSV-RNGDL----FFKKVQVEDGGVYTCYAMGETFNE-  327 (361)
T ss_dssp             CEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSC-CSSSSEEE-ETTEE----EESSCCTTSCEEEEEEEECSSCEE-
T ss_pred             ceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeec-ccCCceEe-ecCeE----EEeecCcccCEEEEEEEecCCCcc-
Confidence            36789999999999998 999999999776543221 01112222 44444    456779999999999999998877 


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.+.|..
T Consensus       328 ~~~~~l~V~~  337 (361)
T 2xot_A          328 TLSVELKVYN  337 (361)
T ss_dssp             EEEEEEEEES
T ss_pred             EEEEEEEEEe
Confidence            5677777754

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.14  E-value=2.8e-10  Score=73.40  Aligned_cols=80  Identities=21%  Similarity=0.289  Sum_probs=56.2

Q ss_pred             ecCCCEEEEEeeeccC-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC--Cccc-
Q psy8666           4 AKNEPVTLNCKAEGKP-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS--VGTA-   79 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~--~~~~-   79 (124)
                      ..|+.+.|.|.+.+.| .|.+.|+|++..+....    ..... ....+    .|..++.+|.|.|.|.+.|.  .+.. 
T Consensus       141 ~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~----~~~~~-~~~~L----~I~~v~~~D~G~Y~C~a~n~~~~g~~~  211 (329)
T 3oq3_B          141 HDKYGIDLYCGILYAKHYNNITWYKNNQELIIDG----TKYSQ-SGQNL----IIHNPELEDSGRYDCYVHYDDVRIKND  211 (329)
T ss_dssp             STTTCEEEECCCCSCCCCCEEEEEETTEECCCSS----SSEEE-ETTEE----EECSCCGGGCEEEEEEEEECCTTSSSC
T ss_pred             eCCCcEEEEeccCCCCCCceEEEEECCccCCCCC----ceEec-CCCEE----EEeecChhhCEEEEEEEEecccCCCce
Confidence            4689999999999999 89999999998875221    12212 23444    35666999999999999997  5433 


Q ss_pred             --eeeeEEEEEEeee
Q psy8666          80 --VSRNATLQVAVVI   92 (124)
Q Consensus        80 --~~~~~~l~v~~~~   92 (124)
                        .+..+.|.|..++
T Consensus       212 ~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          212 IVVSRCKILTVIPSQ  226 (329)
T ss_dssp             EEEEEEEEEEEECCC
T ss_pred             eEEEeeEEEEEECCC
Confidence              1223667776554

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.14  E-value=2.5e-10  Score=72.24  Aligned_cols=86  Identities=20%  Similarity=0.230  Sum_probs=57.0

Q ss_pred             EecCCCEEEEEeeeccCCCe-EEEEeCCEEe----eccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           3 VAKNEPVTLNCKAEGKPEPT-IEWYKDGELV----ETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      +..|+.+.|.|.+.+.|.|. +.|++++..+    ....   .................|..++..|.|.|.|.+.|..|
T Consensus       200 v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g  276 (290)
T 2o26_X          200 LKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKH---NSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFG  276 (290)
T ss_dssp             CCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEEC---CEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSC
T ss_pred             EecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecc---cccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCC
Confidence            46799999999999999997 9999998763    2110   01111000111223345678899999999999999999


Q ss_pred             cceeeeEEEEEEeee
Q psy8666          78 TAVSRNATLQVAVVI   92 (124)
Q Consensus        78 ~~~~~~~~l~v~~~~   92 (124)
                      .. +..+.|.|..+|
T Consensus       277 ~~-~~~~~l~V~~~P  290 (290)
T 2o26_X          277 SA-NVTTTLKVVEKG  290 (290)
T ss_dssp             EE-EEEEEECC----
T ss_pred             cE-EEEEEEEEEeCC
Confidence            87 567777766543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.14  E-value=2e-10  Score=70.08  Aligned_cols=75  Identities=25%  Similarity=0.457  Sum_probs=58.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|++..+...           ....+    .|..++..|.|.|.|.+.+..+...+
T Consensus        29 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-----------~~~~L----~i~~v~~~d~G~Y~C~~~n~~~~~~s   93 (218)
T 3k0w_A           29 AVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----------NTSEL----IFNAVHVKDAGFYVCRVNNNFTFEFS   93 (218)
T ss_dssp             EEETTSBEEEECEETTTTSSEEEEEETTEECTTC-----------CSSEE----EETTCCGGGCEEEEEEEECTTCCEEC
T ss_pred             EEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-----------CCCEE----EEccCChhhCeEeEEEEEcCCCCcee
Confidence            4678999999999999999999999999876531           11222    35677999999999999998876555


Q ss_pred             eeEEEEEEee
Q psy8666          82 RNATLQVAVV   91 (124)
Q Consensus        82 ~~~~l~v~~~   91 (124)
                      ..+.|.|...
T Consensus        94 ~~~~l~V~~~  103 (218)
T 3k0w_A           94 QWSQLDVCDI  103 (218)
T ss_dssp             CCEEEEEECC
T ss_pred             eEEEEEEEcc
Confidence            6677777654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.14  E-value=7.5e-10  Score=69.78  Aligned_cols=83  Identities=19%  Similarity=0.223  Sum_probs=58.0

Q ss_pred             ecCCCEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           4 AKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         4 ~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      ..|+.+.|.|.+.+ .|.|.+.|++++..+...     ...... ..........|..++..|.|.|.|.+.|..|.. .
T Consensus       199 ~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~  272 (289)
T 3ejj_X          199 IRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP-----LNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR-T  272 (289)
T ss_dssp             CSSSCEEEEEEEEESSSCCEEEEEETTEECCCC-----EEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEE-E
T ss_pred             EeCCcEEEEEEeCCCCCceEEEEEECCEEeecc-----CCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCc-c
Confidence            57999999999988 689999999999876532     111111 111112334567789999999999999999988 5


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.+...+
T Consensus       273 ~s~~L~~~~~~  283 (289)
T 3ejj_X          273 ATMNFQVVESH  283 (289)
T ss_dssp             EEEEEECC---
T ss_pred             ccEEEEEEecc
Confidence            67777765543

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.14  E-value=2.3e-10  Score=68.47  Aligned_cols=74  Identities=38%  Similarity=0.638  Sum_probs=53.8

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.|.| .+.|++++..+......       .....+    .|..++  |.|.|.|.+.|..|...
T Consensus       117 ~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-------~~~~~L----~i~~~~--d~G~Y~C~a~N~~g~~~  183 (195)
T 2c5d_C          117 TVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-------GPQRSL----HVPGLN--KTSSFSCEAHNAKGVTT  183 (195)
T ss_dssp             EECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-------SCCEEE----EECCCS--SCEEEEEEEEETTEEEE
T ss_pred             EEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-------CCCCeE----EEcccc--cCceEEEEEEcCCCceE
Confidence            35679999999999999999 99999999876532110       111222    233334  78999999999998875


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      +..+.|.|
T Consensus       184 s~~~~l~V  191 (195)
T 2c5d_C          184 SRTATITV  191 (195)
T ss_dssp             CCCEEEEE
T ss_pred             EEEEEEEE
Confidence            56777777

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.14  E-value=2e-10  Score=75.48  Aligned_cols=80  Identities=25%  Similarity=0.503  Sum_probs=59.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+++|..+......  .. .....+.+    .|..++.+|.|.|.|.+.|..|.. .
T Consensus       323 ~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~--~~-~~~~~~~L----~i~~v~~~d~G~Y~C~a~N~~G~~-~  394 (404)
T 3p3y_A          323 ILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN--PN-REVAGDTI----IFRDTQISSRAVYQCNTSNEHGYL-L  394 (404)
T ss_dssp             EECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCC--TT-EEEETTEE----EESSCCSSCCCEEEEEEEETTEEE-E
T ss_pred             eeecCCcEEEEEEccccCCCceEEEECCEecCCCCCC--ce-EEecCCEE----EEeecCHHHCEEEEEEEEeCCCcE-E
Confidence            3567999999999999999999999999987643211  11 11223333    456779999999999999999987 4


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus       395 ~~~~l~V~  402 (404)
T 3p3y_A          395 ANAFVSVL  402 (404)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            56666654

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.13  E-value=1.1e-09  Score=64.18  Aligned_cols=74  Identities=26%  Similarity=0.504  Sum_probs=53.3

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.| .+.+.|+|++..+...            ...+.+.    .++..|.|.|.|.+.+...   
T Consensus        15 ~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------------~~~~~~~----~~~~~d~G~Y~C~~~~~~~---   75 (170)
T 3ry4_A           15 NVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------------TQPSYRF----KANNNDSGEYTCQTGQTSL---   75 (170)
T ss_dssp             EEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------------CSSEEEE----ECCGGGCEEEEEEETTSBC---
T ss_pred             EEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------------ccceEEE----ecccccCeEEEEEEeCCCc---
Confidence            467899999999998876 6789999999876531            1223333    3489999999999987543   


Q ss_pred             eeeEEEEEEeeeee
Q psy8666          81 SRNATLQVAVVIFF   94 (124)
Q Consensus        81 ~~~~~l~v~~~~~~   94 (124)
                      +..+.|.|..++..
T Consensus        76 s~~~~l~v~~~~~~   89 (170)
T 3ry4_A           76 SDPVHLTVLFEWLV   89 (170)
T ss_dssp             CCCEEEEEECCSEE
T ss_pred             eEeEEEEEECCceE
Confidence            33567777665433

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.13  E-value=1.4e-09  Score=64.41  Aligned_cols=83  Identities=24%  Similarity=0.370  Sum_probs=56.3

Q ss_pred             EecCCCEEEEEeeeccC-CCeEEEEe---CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCc
Q psy8666           3 VAKNEPVTLNCKAEGKP-EPTIEWYK---DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVG   77 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p-~p~v~w~k---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~   77 (124)
                      +..|+.+.|.|.+.+.| .|.+.|++   ++.......  ...+......+.. ....|..++ ..|.|.|.|.+.|..|
T Consensus        95 ~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~L~i~~v~~~~d~G~Y~C~a~N~~g  171 (184)
T 3b5h_A           95 INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG--SESRFFVSSSQGR-SELHIENLNMEADPGQYRCNGTSSKG  171 (184)
T ss_dssp             ECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTT--GGGTEEEEEETTE-EEEEECSCCTTTSSEEEEEEEEETTE
T ss_pred             EcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecC--CCCEEEEEecCCe-eEEEEeeccccccCceEEEEEEeCCC
Confidence            56799999999999999 79999999   444332110  0122222222222 223457778 8999999999999999


Q ss_pred             cceeeeEEEEEE
Q psy8666          78 TAVSRNATLQVA   89 (124)
Q Consensus        78 ~~~~~~~~l~v~   89 (124)
                      .. ...+.|.|.
T Consensus       172 ~~-~~~~~l~V~  182 (184)
T 3b5h_A          172 SD-QAIITLRVR  182 (184)
T ss_dssp             EE-EEEEEEEEC
T ss_pred             cc-eEEEEEEEe
Confidence            87 445666664

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.13  E-value=6.9e-11  Score=79.04  Aligned_cols=80  Identities=13%  Similarity=0.142  Sum_probs=54.5

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +.+|+.+.|.|.+.+.|.|.+.|+|+|..+......       .. ....+.  .......|.|.|.|.+.|..|.. +.
T Consensus       338 v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-------~~-~~~~~~--~~~~~~~D~G~YtC~A~N~~G~~-~~  406 (423)
T 3qs7_E          338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG-------LD-NGYSIS--KFCNHKHQPGEYIFHAENDDAQF-TK  406 (423)
T ss_dssp             CCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB-------CS-SSSEEE--EECCCTTCCSCEEEEEEETTEEE-EE
T ss_pred             ecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcccc-------cc-CCcEEE--EEecccccCEEEEEEEEcCCceE-EE
Confidence            457899999999999999999999999988642100       00 111110  02236789999999999999988 67


Q ss_pred             eEEEEEEeeee
Q psy8666          83 NATLQVAVVIF   93 (124)
Q Consensus        83 ~~~l~v~~~~~   93 (124)
                      .+.|.|...|.
T Consensus       407 s~~L~v~~~p~  417 (423)
T 3qs7_E          407 MFTLNIRSGTK  417 (423)
T ss_dssp             EEEEC------
T ss_pred             EEEEEEecCCc
Confidence            88888877664

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.13  E-value=1.9e-09  Score=76.88  Aligned_cols=91  Identities=26%  Similarity=0.511  Sum_probs=66.4

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+++|..+..... ..........+.......|..++..|.|.|.|.+.|..|.. ..
T Consensus       441 v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~  518 (816)
T 3dmk_A          441 MEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDR-YQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA-EH  518 (816)
T ss_dssp             ECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTT-EEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEE-EE
T ss_pred             EcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCC-cccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeE-EE
Confidence            56799999999999999999999999988753210 00111122344444445667889999999999999999887 56


Q ss_pred             eEEEEEEeeeeee
Q psy8666          83 NATLQVAVVIFFI   95 (124)
Q Consensus        83 ~~~l~v~~~~~~~   95 (124)
                      ...|.|..+|.+.
T Consensus       519 ~~~l~V~~~p~~~  531 (816)
T 3dmk_A          519 SAKLNVYGLPYIR  531 (816)
T ss_dssp             EEEEEECSSCEEC
T ss_pred             EEEEEEecCCeeE
Confidence            7888887776543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.13  E-value=4.3e-10  Score=69.20  Aligned_cols=83  Identities=28%  Similarity=0.480  Sum_probs=59.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|++..+....... ..........+    .|..++..|.|.|.|.+.+..+.. .
T Consensus        26 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~L----~i~~v~~~d~G~Y~C~~~~~~~~~-~   99 (241)
T 3grw_A           26 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG-GIKLRHQQWSL----VMESVVPSDRGNYTCVVENKFGSI-R   99 (241)
T ss_dssp             EEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTT-CCEEEGGGTEE----EECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccc-ceeeeccceEE----EEEeCCcccCEEEEEEEeecCCce-E
Confidence            46789999999999999999999999998876432111 11122233333    356669999999999999988776 4


Q ss_pred             eeEEEEEEe
Q psy8666          82 RNATLQVAV   90 (124)
Q Consensus        82 ~~~~l~v~~   90 (124)
                      ..+.|.|..
T Consensus       100 ~~~~l~V~~  108 (241)
T 3grw_A          100 QTYTLDVLE  108 (241)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            566777754

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.12  E-value=6e-10  Score=62.03  Aligned_cols=89  Identities=19%  Similarity=0.319  Sum_probs=55.2

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCCEEeeccCCC--------CCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDGELVETSKSD--------AKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+..|+.+.|.|...+.  +.+.+.|+|+...+......        ...+.....+..+    .|.+++.+|.|.|.|.
T Consensus        14 ~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL----~I~~v~~~D~G~Y~C~   89 (117)
T 3q0h_A           14 SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGL----TLQSLTVNDTGEYFCI   89 (117)
T ss_dssp             EEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCE----EECSCCGGGCEEEEEE
T ss_pred             EEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEE----EEeeCChhhCEEEEEE
Confidence            46789999999998762  33468999986543211000        0112222223333    4577799999999998


Q ss_pred             eEe-CCccceeeeEEEEEEeeeeee
Q psy8666          72 ARN-SVGTAVSRNATLQVAVVIFFI   95 (124)
Q Consensus        72 ~~~-~~~~~~~~~~~l~v~~~~~~~   95 (124)
                      +.+ ..|.. ...+.|.|..+|.+.
T Consensus        90 v~~~~~g~~-~~~~~L~V~~pp~~~  113 (117)
T 3q0h_A           90 YHTYPDGTY-TGRIFLEVLESSVAE  113 (117)
T ss_dssp             EEEETTCCE-EEEEEEEEECC----
T ss_pred             EEECCCCCe-EEEEEEEEEccCccc
Confidence            765 44555 567889998887654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.12  E-value=1.1e-09  Score=65.86  Aligned_cols=83  Identities=23%  Similarity=0.117  Sum_probs=49.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc--
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA--   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~--   79 (124)
                      .+..|+.+.|.|.+.+. .+.+.|+|+|..+....    ........+.......|..++.+|.|.|.|.+.|..+..  
T Consensus       111 ~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~  185 (198)
T 1ugn_A          111 VVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQC----LNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEW  185 (198)
T ss_dssp             EEETTCCEEEEEECSSC-CSEEEEEEC------CE----EEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEE
T ss_pred             ccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcc----ccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccc
Confidence            46789999999999887 78999999998754210    000011111111223467779999999999999976522  


Q ss_pred             --eeeeEEEEEE
Q psy8666          80 --VSRNATLQVA   89 (124)
Q Consensus        80 --~~~~~~l~v~   89 (124)
                        .+..+.|.|.
T Consensus       186 s~~S~~~~l~V~  197 (198)
T 1ugn_A          186 SLPSDLLELLVL  197 (198)
T ss_dssp             CCCCCCEEEEEE
T ss_pred             cCcCceEEEEec
Confidence              2556666653

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.12  E-value=4e-10  Score=68.58  Aligned_cols=83  Identities=13%  Similarity=0.234  Sum_probs=53.8

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeC-CEEeeccCCCCCceEEE--ccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKD-GELVETSKSDAKSQRVI--LPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~-g~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +..|+.+.|.|.+.|.|.|.+.|+++ +..+...     .....  ...+..... ....++..|.|.|.|.+.|..|..
T Consensus       128 ~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~-----~~~~~~~~~~~~~~~~-~~l~v~~~d~g~Y~C~a~n~~g~~  201 (222)
T 3sbw_C          128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGK-----TTTTNSKREEKLFNVT-STLRINTTTNEIFYCTFRRLDPEE  201 (222)
T ss_dssp             ETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCE-----EEEEECC----CEEEE-EEEEEECCTTCEEEEEEEETTTTE
T ss_pred             ecCCCcEEEEEEecCCCCCeEEEEECCCceecCc-----cceEEEcCCCCCEEEE-EEEEEeccCCcEEEEEEEeCccce
Confidence            45788999999999999999999998 5544321     11111  112222211 111226789999999999999887


Q ss_pred             eeeeEEEEEEeee
Q psy8666          80 VSRNATLQVAVVI   92 (124)
Q Consensus        80 ~~~~~~l~v~~~~   92 (124)
                       ...+.|.|...|
T Consensus       202 -~~~~~l~v~~~p  213 (222)
T 3sbw_C          202 -NHTAELVIPELP  213 (222)
T ss_dssp             -EEEEEEECCCC-
T ss_pred             -eeEEEEEecCCc
Confidence             567777776544

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.11  E-value=5.8e-10  Score=73.08  Aligned_cols=86  Identities=22%  Similarity=0.414  Sum_probs=60.6

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+|++..+....   .........+... ...|..+...|.|.|.|.+.|..|.. ..
T Consensus       112 ~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~---~~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~  186 (389)
T 2jll_A          112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKN---TTNLKTYSTGRKM-ILEIAPTSDNDFGRYNCTATNHIGTR-FQ  186 (389)
T ss_dssp             ECTTCCEEEEECEEEESCCEEEEEETTEESSCTT---CTTEEEEECSSCE-EEEECCCSTTSSEEEEEEEEETTEEE-EE
T ss_pred             eccCCEEEEEEEEEecCCCeEEEEECCccCCccc---CceEEEeccCCEE-EEEECCCChhhCEEEEEEEEcCCCcE-EE
Confidence            5679999999999999999999999998876421   0112222222211 23456778999999999999999987 44


Q ss_pred             eEEEEEEeeee
Q psy8666          83 NATLQVAVVIF   93 (124)
Q Consensus        83 ~~~l~v~~~~~   93 (124)
                      .+.+.+...|.
T Consensus       187 ~~~l~v~~~P~  197 (389)
T 2jll_A          187 EYILALADVPS  197 (389)
T ss_dssp             EEEEEECCCCC
T ss_pred             EEEEEecCCCC
Confidence            56666654443

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.11  E-value=4.4e-10  Score=68.41  Aligned_cols=86  Identities=20%  Similarity=0.352  Sum_probs=55.0

Q ss_pred             EecCCCEEEEEee-eccCCCeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           3 VAKNEPVTLNCKA-EGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         3 ~~~G~~~~l~C~~-~~~p~p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      +..|+.+.|.|.+ .+.|.|.+.|++ ++..+...   ..........+.. ....+..++.+|.|.|.|.+.|..|.. 
T Consensus       122 v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~-~~l~i~~v~~~d~G~Y~C~a~n~~g~~-  196 (222)
T 4i0k_A          122 LRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGN---VTTSQMANERGLF-DVHSVLRVVLGANGTYSCLVRNPVLQQ-  196 (222)
T ss_dssp             --CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSE---EEEEEEECTTSCE-EEEEEEEEECCTTCEEEEEEEETTTTE-
T ss_pred             ecCCceEEEEEecccccCCCeEEEEcCCCccCCCC---cceeEEcCCCCeE-EEEEEEEEEeCCCCEEEEEEECCCCCC-
Confidence            4568999999999 788999999998 45443311   0011111222322 222234448899999999999999987 


Q ss_pred             eeeEEEEEEeeee
Q psy8666          81 SRNATLQVAVVIF   93 (124)
Q Consensus        81 ~~~~~l~v~~~~~   93 (124)
                      ...+.|.|..+|.
T Consensus       197 ~~~~~l~V~~~p~  209 (222)
T 4i0k_A          197 DAHGSVTITGQPL  209 (222)
T ss_dssp             EEEEEEECCC---
T ss_pred             ceEEEEEEeCCcc
Confidence            5678888877664

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.11  E-value=2.5e-10  Score=70.55  Aligned_cols=73  Identities=18%  Similarity=0.421  Sum_probs=49.4

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCC-------------------CCceEEEccCCcEEEEEEEcCCCcc
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD-------------------AKSQRVILPTGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~i~~~~~~   63 (124)
                      +.+|+.+.|.|.+.+.|.|.+.|+|++..+......                   ............    ..|..++.+
T Consensus       148 v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~i~~v~~~  223 (250)
T 2fbo_J          148 VDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARN----LVIRAAKIT  223 (250)
T ss_dssp             CCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTE----EEECSCCGG
T ss_pred             ecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccE----EEEecCCcc
Confidence            346999999999999999999999998765421000                   000000111122    345677999


Q ss_pred             CCeEEEEEeEeCCccc
Q psy8666          64 DGGVYWCLARNSVGTA   79 (124)
Q Consensus        64 d~g~y~C~~~~~~~~~   79 (124)
                      |.|.|.|.+.|..|..
T Consensus       224 D~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          224 DAGRVWCELATGQGEL  239 (250)
T ss_dssp             GCEEEEEEEESSSSGG
T ss_pred             cCEEEEEEecCCcccc
Confidence            9999999999976654

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.11  E-value=4.8e-10  Score=67.55  Aligned_cols=85  Identities=28%  Similarity=0.531  Sum_probs=57.9

Q ss_pred             EEecCCCEEEEEe-eeccCCCeEEEEeCCE-EeeccCCC----CCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCK-AEGKPEPTIEWYKDGE-LVETSKSD----AKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~-~~~~p~p~v~w~k~g~-~~~~~~~~----~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+..|+.+.|.|. ..+.|.|.+.|++++. .+......    ....... .....+    .|..++.+|.|.|.|.+.|
T Consensus       115 ~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~n  190 (212)
T 1f97_A          115 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDL----IFDPVTAFDSGEYYCQAQN  190 (212)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCE----EESSCCGGGCEEEEEEEEC
T ss_pred             ccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceE----EEEecChhhCcEEEEEEcc
Confidence            3568999999999 7899999999999998 66532110    0011111 123333    3566699999999999999


Q ss_pred             CCccc-eeeeEEEEEEe
Q psy8666          75 SVGTA-VSRNATLQVAV   90 (124)
Q Consensus        75 ~~~~~-~~~~~~l~v~~   90 (124)
                      ..|.. .+..+.|.|..
T Consensus       191 ~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          191 GYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             SSSCCEECCCEEEEEES
T ss_pred             ccCCccccceEEEEEEE
Confidence            99877 45566666643

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.10  E-value=7.4e-11  Score=71.19  Aligned_cols=77  Identities=22%  Similarity=0.349  Sum_probs=54.5

Q ss_pred             EecCCCEEEEEee-eccCCCeEEEEeCCE--EeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           3 VAKNEPVTLNCKA-EGKPEPTIEWYKDGE--LVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         3 ~~~G~~~~l~C~~-~~~p~p~v~w~k~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +..|+.+.|.|.+ .+.|.|.+.|++++.  .+...      .......+.+    .|..++.+|.|.|.|.+.|..|..
T Consensus       133 ~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~------~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~N~~g~~  202 (214)
T 3jz7_A          133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP------WLAEMTSPVI----SVKNASSEYSGTYSCTVQNRVGSD  202 (214)
T ss_dssp             CBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGG------GGGGTTSSEE----EECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcc------ceeccCCCEE----EEecCCHHHCEEEEEEEEcCCCcE
Confidence            4568999999999 789999999999543  22211      1111122323    356679999999999999999887


Q ss_pred             eeeeEEEEEEe
Q psy8666          80 VSRNATLQVAV   90 (124)
Q Consensus        80 ~~~~~~l~v~~   90 (124)
                       +..+.|.|..
T Consensus       203 -~~~~~l~V~~  212 (214)
T 3jz7_A          203 -QCMLRLDVVP  212 (214)
T ss_dssp             -EEEEEECCBC
T ss_pred             -EEEEEEEEeC
Confidence             5677776653

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.10  E-value=9.8e-10  Score=66.02  Aligned_cols=72  Identities=17%  Similarity=0.337  Sum_probs=49.0

Q ss_pred             ecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           4 AKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         4 ~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      ..|+.+.|.|.+. +.|.|.+.|+|+|..+...    .........+.++....+..++..|.|.|.|.+.|..+..
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~----~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~  191 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAI----NTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV  191 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCS----EEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECccc----cceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCccee
Confidence            3477789999995 8899999999999877632    1122222232332222223336789999999999998876

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.10  E-value=8.6e-10  Score=65.17  Aligned_cols=72  Identities=35%  Similarity=0.592  Sum_probs=52.6

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.|.| .+.|++++..+...      .   .....+    .|..  .+|.|.|.|.+.|..|...
T Consensus       109 ~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~------~---~~~~~L----~i~~--~~d~G~Y~C~a~N~~g~~~  173 (182)
T 1rhf_A          109 AVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP------A---PSPSVL----NVTG--VTQSTMFSCEAHNLKGLAS  173 (182)
T ss_dssp             EECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS------E---ESSEEE----EECC--CSSCEEEEEEEEETTEEEE
T ss_pred             EecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCC------C---CCceEE----EEec--cccCeEEEEEEECCCCCcc
Confidence            35679999999999999999 99999999877532      1   011122    2233  3689999999999998875


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      +..+.|.|
T Consensus       174 s~~~~l~V  181 (182)
T 1rhf_A          174 SRTATVHL  181 (182)
T ss_dssp             CCCEEEEE
T ss_pred             cceEEEEe
Confidence            55666665

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.09  E-value=1.3e-09  Score=65.93  Aligned_cols=88  Identities=23%  Similarity=0.361  Sum_probs=55.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EEee---c----cCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--ELVE---T----SKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~~~---~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++  ..+.   .    ................. ....|.+++.+|.|.|.|.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~   90 (213)
T 3d9a_L           12 SVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTD-FTLSINSVETEDFGMYFCQQ   90 (213)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             EEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCE-EEEEECCCChhhCEEEEEee
Confidence            4678999999999999888999999843  2110   0    00000011111111111 23456788999999999999


Q ss_pred             EeCCccceeeeEEEEEEe
Q psy8666          73 RNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~   90 (124)
                      .+..+........|.|..
T Consensus        91 ~~~~~~~~~~~~~l~V~~  108 (213)
T 3d9a_L           91 SNSWPYTFGGGTKLEIKR  108 (213)
T ss_dssp             CSSSSCEECCCEEEEECC
T ss_pred             ecCCcceeCCCEEEEEec
Confidence            998765444455666654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.08  E-value=3.5e-10  Score=74.02  Aligned_cols=83  Identities=34%  Similarity=0.592  Sum_probs=59.9

Q ss_pred             ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc-cCCeEEEEEeEeCCccceee
Q psy8666           4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE-QDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~d~g~y~C~~~~~~~~~~~~   82 (124)
                      .+|+.+.|.|.+.+.|.|.+.|+|+|..+....   .... ....+.+.    |..+.. .|.|.|.|.+.|..|...+.
T Consensus        20 ~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~---~~~~-~~~~~~L~----i~~~~~~~D~G~Y~C~a~n~~g~~~s~   91 (382)
T 1cs6_A           20 SAEEKVTLTCRARANPPATYRWKMNGTELKMGP---DSRY-RLVAGDLV----ISNPVKAKDAGSYQCVATNARGTVVSR   91 (382)
T ss_dssp             CSCCEEEECCEEEEESCCEEEEEETTEECCCST---TSSE-EEETTEEE----EESCCHHHHCEEEEEEEEETTEEEECC
T ss_pred             CCCCcEEEEEEecCCCCCEEEEEECCEECCcCC---CccE-EeeCCeEE----EecccccccCEEEEEEEEcCCcEEEec
Confidence            578999999999999999999999998876321   1122 22344443    334465 99999999999998876555


Q ss_pred             eEEEEEEeeeee
Q psy8666          83 NATLQVAVVIFF   94 (124)
Q Consensus        83 ~~~l~v~~~~~~   94 (124)
                      ...|.|...+.+
T Consensus        92 ~~~l~v~~~~~~  103 (382)
T 1cs6_A           92 EASLRFGFLQEF  103 (382)
T ss_dssp             CEEEEEEEECCC
T ss_pred             ceEEEeeccccc
Confidence            677777665543

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.08  E-value=6.5e-10  Score=66.77  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=41.3

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      +..|+.+.|.|.+.+.| +.+.|+|+|..+....    ........+.......|..++.+|.|.|.|.+.|..+
T Consensus       111 v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          111 VTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWT----LDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             ------CEEEEEESSCC-SEEEEEEC---CCEEE----EECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             ccCCCcEEEEEEcCCCC-CEEEEEccCCcccccc----cccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            56799999999999888 8999999998654210    0001112222223345677799999999999999653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.08  E-value=4e-10  Score=75.58  Aligned_cols=85  Identities=28%  Similarity=0.443  Sum_probs=58.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+++.+.|.+ +.|.|.+.|++++....... ...........+.+    .|..++.+|.|.|.|.+.|..|.. +
T Consensus       352 ~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~G~~-~  424 (440)
T 3zyj_A          352 NVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHG-AYKVRIAVLSDGTL----NFTNVTVQDTGMYTCMVSNSVGNT-T  424 (440)
T ss_dssp             EECTTSCCEECCEE-SSTTSEEEEECTTSCEEESS-SCCSSEEECTTCCE----EESSCCSTTCEEEEEEEECSSCEE-E
T ss_pred             eeccCceEEEEeec-CCCCCceEEEeCCCceeecc-CCCceEEEccCCeE----EEccCChhhCEEEEEEEEcCCCcE-E
Confidence            46789999999999 56899999999554333211 11123334445554    456779999999999999999988 5


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.+.|...|.
T Consensus       425 ~~~~~~v~~~~~  436 (440)
T 3zyj_A          425 ASATLNVTGTHH  436 (440)
T ss_dssp             EEEEEEEC----
T ss_pred             EEEEEEEecccc
Confidence            677888776654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.08  E-value=2.3e-09  Score=66.42  Aligned_cols=114  Identities=14%  Similarity=0.056  Sum_probs=63.7

Q ss_pred             EEecCCCEEEEEeeeccCCCe-----EEEEeCCEEee----ccCCCCCceEEEccCCc--------EEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-----IEWYKDGELVE----TSKSDAKSQRVILPTGS--------LFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-----v~w~k~g~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.|.+.     +.|+|++....    .................        ......|.+++..|
T Consensus        14 ~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D   93 (248)
T 3pv7_A           14 ITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEE   93 (248)
T ss_dssp             EEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGG
T ss_pred             EEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHH
Confidence            467899999999998887776     99998632111    00000000000000000        00113467779999


Q ss_pred             CeEEEEEeEeCCccceeeeEEEEEEeeeeeeeeccceehhhhhheeeeeecC
Q psy8666          65 GGVYWCLARNSVGTAVSRNATLQVAVVIFFISFFRFKLSAYLYDLFRGVVNK  116 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (124)
                      .|.|.|.+.+..+.. ...+.|.|..+|.+...+.......-...+.|.+.|
T Consensus        94 ~G~Y~C~~~~~~~~~-~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g  144 (248)
T 3pv7_A           94 AGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSG  144 (248)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEECC--------CEEEEEEEE
T ss_pred             CeEEEEEEEeCCccc-eeEEEEEEecCCceEEecCCccccCCCcEEEEEEcc
Confidence            999999999987765 567888888777655443321111112235565555

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.07  E-value=2.5e-09  Score=67.42  Aligned_cols=87  Identities=24%  Similarity=0.484  Sum_probs=60.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.+.|. .+.|++ +|..+...     ........+.. ....|..++..|.|.|.|.+.|..|...
T Consensus        15 ~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~-----~~~~~~~~~~~-~~L~i~~~~~~D~G~Y~C~~~n~~g~~~   87 (291)
T 2wim_A           15 ELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIIST-----QRVVVQKEGVR-SRLTIYNANIEDAGIYRCQATDAKGQTQ   87 (291)
T ss_dssp             EEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCB-----TTEEEEEETTE-EEEEECSCCGGGCEEEEEEEECSSSCEE
T ss_pred             EecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCC-----CcEEEecCCCE-EEEEEccCCcccCEEEEEEEecccCceE
Confidence            4678999999999998774 899999 66554421     12222222222 2334677799999999999999888765


Q ss_pred             eeeEEEEEEeeeeee
Q psy8666          81 SRNATLQVAVVIFFI   95 (124)
Q Consensus        81 ~~~~~l~v~~~~~~~   95 (124)
                      +..+.|.|..++.+.
T Consensus        88 ~~~~~l~v~~~~~~~  102 (291)
T 2wim_A           88 EATVVLEIYQKLTFR  102 (291)
T ss_dssp             EEEEEEEEECCCBCC
T ss_pred             EEEEEEEecCCcceE
Confidence            566777776665543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.07  E-value=4.2e-10  Score=68.29  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=53.7

Q ss_pred             cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCC-CccCCeEEEEEeEeCCccceeee
Q psy8666           5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK-KEQDGGVYWCLARNSVGTAVSRN   83 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~d~g~y~C~~~~~~~~~~~~~   83 (124)
                      +|+.+.|.|.  +.|.|.+.|+|++..+....   .........+.+    .|..+ +.+|.|.|.|.+.|..|...+..
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~---~~~~~~~~~~~L----~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~  197 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDE---DDKNIGSDEDHL----SLKEFSELEQSGYYVCYPRGSKPEDANFY  197 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEETTEEESCCT---TCTTEEEETTEE----EETTCCHHHHCEEEEEEETTSCGGGSSCE
T ss_pred             cCCcEEEEcC--CCCCCceEEEECCEECCCcc---CCceEecCCCEE----EEeeCCccccCEEEEEEeccCCCCceeEE
Confidence            7999999998  77889999999998875321   011111123333    46788 88999999999999998644555


Q ss_pred             EEEEE
Q psy8666          84 ATLQV   88 (124)
Q Consensus        84 ~~l~v   88 (124)
                      +.|.+
T Consensus       198 l~l~~  202 (204)
T 1sy6_A          198 LYLRA  202 (204)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.07  E-value=3.7e-10  Score=72.55  Aligned_cols=78  Identities=22%  Similarity=0.331  Sum_probs=58.0

Q ss_pred             EecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEc-CCCccCCeEEEEEeEeCCccce
Q psy8666           3 VAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH-GKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      +..|+.+.|.|.+.+.|.|. +.|++++..+...      .  ......+    .|. .+..+|.|.|.|.+.|..|.. 
T Consensus       244 ~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~------~--~~~~~~L----~i~~~v~~~d~G~Y~C~a~N~~G~~-  310 (331)
T 3u83_A          244 YLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG------V--EAQNRTL----FFKGPINYSLAGTYICEATNPIGTR-  310 (331)
T ss_dssp             BTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT------E--EEETTEE----EECSCCCGGGCEEEEEEEEETTEEE-
T ss_pred             EeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc------c--eecCcEE----EEeCCCccccCeEEEEEEEeccccc-
Confidence            45689999999999999998 9999998766521      1  1223333    344 568999999999999999987 


Q ss_pred             eeeEEEEEEeeee
Q psy8666          81 SRNATLQVAVVIF   93 (124)
Q Consensus        81 ~~~~~l~v~~~~~   93 (124)
                      +..+.|.|...+.
T Consensus       311 ~~~~~l~V~~~~~  323 (331)
T 3u83_A          311 SGQVEVNITEAAA  323 (331)
T ss_dssp             EEEEEECCBC---
T ss_pred             eEEEEEEEeccch
Confidence            6677887766543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.07  E-value=3e-09  Score=62.96  Aligned_cols=80  Identities=16%  Similarity=0.217  Sum_probs=55.7

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+.+|+.+.|.|.+.+.|.|  .+.|+|++..+.....         ..... .+ .+.  +..|.|.|.|.+.|..   
T Consensus         9 ~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~---------~~~~~-~l-~i~--~~~d~G~Y~C~~~n~~---   72 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL---------PGQKT-EF-KVD--SDDQWGEYSCVFLPEP---   72 (184)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC---------CCSEE-EE-EEC--GGGCCEEEEEEEESTT---
T ss_pred             EEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccc---------cCCcE-EE-EEe--chhhCeEEEEEEECCc---
Confidence            46789999999999887777  8999999988764310         01111 11 222  5889999999999822   


Q ss_pred             eeeeEEEEEEeeeeeeeec
Q psy8666          80 VSRNATLQVAVVIFFISFF   98 (124)
Q Consensus        80 ~~~~~~l~v~~~~~~~~~~   98 (124)
                       .....|.|..+|.+...+
T Consensus        73 -~~~~~l~V~~~P~~~~~~   90 (184)
T 3b5h_A           73 -MGTANIQLHGPPRVKAVK   90 (184)
T ss_dssp             -SCEEEEEECCSCCCEESC
T ss_pred             -CcEEEEEEecCCceeecC
Confidence             346788888777665443

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.06  E-value=1.5e-09  Score=66.55  Aligned_cols=82  Identities=16%  Similarity=0.099  Sum_probs=53.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceE-EEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc-c
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQR-VILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT-A   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~-~   79 (124)
                      .+.+|+++.|.|.+.+ +.+.+.|+|+|..+....    ... .......  ....|..++.+|.|.|.|.+.|..+. .
T Consensus        19 ~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~----~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~n~~~~~~   91 (218)
T 1uct_A           19 VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREI----GRRLKFWNETD--PEFVIDHMDANKAGRYQCQYRIGHYRFR   91 (218)
T ss_dssp             EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEEC----SEECC----CC--CEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred             ccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccc----cccCCCCccee--eEEEEcccccccCEEEEEEEEcCCCcee
Confidence            4678999999999876 678899999987554210    000 0011110  01245677999999999999997652 2


Q ss_pred             eeeeEEEEEEe
Q psy8666          80 VSRNATLQVAV   90 (124)
Q Consensus        80 ~~~~~~l~v~~   90 (124)
                      .+..+.|.|..
T Consensus        92 ~s~~~~l~V~~  102 (218)
T 1uct_A           92 YSDTLELVVTG  102 (218)
T ss_dssp             ECCCEEEEEEC
T ss_pred             ecCCEEEEEcC
Confidence            34567777764

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.06  E-value=8.4e-10  Score=65.74  Aligned_cols=72  Identities=21%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc-ce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT-AV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~-~~   80 (124)
                      .+.+|+.+.|.|.+.+ +.+.+.|+|++...            ......+    .|..++..|.|.|.|.+.|..+. ..
T Consensus        18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~------------~~~~~~L----~i~~v~~~D~G~Y~C~a~n~~g~~~~   80 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR------------YQDQAVL----FIPAMKRSLAGRYRCSYQNGSLWSLP   80 (184)
T ss_dssp             EEETTCCEEEEEECST-TCSEEEEEETTTCC------------EESSSEE----EESSCCGGGCEEEEEEEEETTEEBCC
T ss_pred             cccCCCcEEEEEeCCC-CCCEEEEEECCccc------------cCcccEE----EECcCChhhCceEEEEEEcCCCccCC
Confidence            4678999999999877 77899999998641            1122333    35667999999999999998763 22


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus        81 s~~~~l~V~~   90 (184)
T 2gi7_A           81 SDQLELVATG   90 (184)
T ss_dssp             CCCEEEEEES
T ss_pred             CCCEEEEecC
Confidence            4566777743

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.06  E-value=7.2e-10  Score=65.45  Aligned_cols=72  Identities=28%  Similarity=0.421  Sum_probs=50.8

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.+.+ .+.|++++..+..            ....+    .|..++..|.|.|.|.+.|..+.  
T Consensus        15 ~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------------~~~~L----~i~~v~~~d~G~Y~C~~~~~~~s--   76 (176)
T 1f2q_A           15 RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------------TNSSL----NIVNAKFEDSGEYKCQHQQVNES--   76 (176)
T ss_dssp             EEETTCCEEEECCTTCC----CCEEEETTEECSC------------CSSEE----EECSCCGGGCEEEEEECTTSSCC--
T ss_pred             ceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------------CceEE----EEeccceecCEEEEEEcCCcccc--
Confidence            57789999999999888775 6899999987652            12233    34566999999999999886543  


Q ss_pred             eeeEEEEEEeee
Q psy8666          81 SRNATLQVAVVI   92 (124)
Q Consensus        81 ~~~~~l~v~~~~   92 (124)
                       ..+.|.|..++
T Consensus        77 -~~~~l~V~~~~   87 (176)
T 1f2q_A           77 -EPVYLEVFSDW   87 (176)
T ss_dssp             -CCEEEEEECSS
T ss_pred             -ccEEEEEeCcc
Confidence             35666666433

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.06  E-value=1.2e-09  Score=65.55  Aligned_cols=80  Identities=20%  Similarity=0.192  Sum_probs=52.0

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc----c
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG----T   78 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~----~   78 (124)
                      +.+|+.+.|.|.+.+ +.+.+.|+|+|..+....     ...............|..++.+|.|.|.|.+.|..+    .
T Consensus       111 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s  184 (196)
T 3p2t_A          111 VTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLC-----LRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLS  184 (196)
T ss_dssp             ECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGS-----EEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEEC
T ss_pred             ecCCCeEEEEEecCC-CCCEEEEEeCCCccccee-----ecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccC
Confidence            568999999999877 446899999987654210     110000011112234677799999999999999876    3


Q ss_pred             ceeeeEEEEE
Q psy8666          79 AVSRNATLQV   88 (124)
Q Consensus        79 ~~~~~~~l~v   88 (124)
                      ..+..+.|.|
T Consensus       185 ~~S~~~~l~V  194 (196)
T 3p2t_A          185 HPSDPLELIV  194 (196)
T ss_dssp             CCCCCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            3355555554

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.06  E-value=2.9e-10  Score=71.19  Aligned_cols=69  Identities=30%  Similarity=0.495  Sum_probs=53.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|++....             ..+.+.  .    ++.+|.|.|.|.+.|..|.. +
T Consensus       196 ~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~-------------~~g~~~--~----v~~~d~G~Y~C~a~N~~G~~-~  255 (265)
T 2oz4_A          196 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPL-------------PIGESV--T----VTRDLEGTYLCRARSTQGEV-T  255 (265)
T ss_dssp             EEETTCEECCCCCCEEESCCEEEEEETTTEEC-------------CTTSCE--E----CCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEcCCCeEEEEeECccCCCCeEEEEECCcccC-------------CCCcEE--E----eehhhCeEEEEEEECCCCcE-E
Confidence            46789999999999999999999999987222             122221  1    37899999999999999887 5


Q ss_pred             eeEEEEEEe
Q psy8666          82 RNATLQVAV   90 (124)
Q Consensus        82 ~~~~l~v~~   90 (124)
                      ..+.|.|..
T Consensus       256 ~~~~l~V~~  264 (265)
T 2oz4_A          256 REVTVNVLS  264 (265)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            677777754

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.06  E-value=2.7e-09  Score=58.36  Aligned_cols=86  Identities=21%  Similarity=0.358  Sum_probs=52.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|+.  ..   +... .   .....+........ .....|.+++.+|.|.|.|.+
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~DsG~Y~C~~   90 (108)
T 1jhl_L           12 VASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGT-DFTLTISSLEPEDFAMYICQQ   90 (108)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSS-EEEEEECSCCTTCCSEEEEEE
T ss_pred             EEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCC-EEEEEECCCCHHHCEEEEEEE
Confidence            4678999999999998888999999853  11   1100 0   00011222222222 233456888999999999999


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      .|...........|.|
T Consensus        91 ~n~~~~~fg~gt~L~V  106 (108)
T 1jhl_L           91 HNEYPWTFGGGTKLEI  106 (108)
T ss_dssp             CSSSSCEECCCEEEEE
T ss_pred             ccCCccEECCCEEEEE
Confidence            9864333334445544

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.05  E-value=3.4e-10  Score=69.33  Aligned_cols=83  Identities=19%  Similarity=0.276  Sum_probs=49.2

Q ss_pred             EecCCCEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|..+.+.|.+.+ .|.|.+.|+|++.......   .........+...+. .+..++.+|.|.|.|.+.|..+.. .
T Consensus       130 ~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~---~~~~~~~~~g~~~v~-s~l~v~~~d~G~YtC~a~N~~g~~-~  204 (226)
T 4f80_A          130 GYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTV---EAPVVADGVGLYAVA-ASVIMRGSSGEGVSCTIRSSLLGL-E  204 (226)
T ss_dssp             EEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCE---ECCCEECTTSCEEEE-EEEEECC----CEEEEEEETTTTE-E
T ss_pred             eccCCceeeEEEeccCCCCCEEEEEECCceEcCCC---ceEEEECCCCcEEEE-EEEEechhcCcEEEEEEEeCCCCe-E
Confidence            567889999999987 5999999998654332110   011112223332222 222347889999999999999887 4


Q ss_pred             eeEEEEEEe
Q psy8666          82 RNATLQVAV   90 (124)
Q Consensus        82 ~~~~l~v~~   90 (124)
                      ..+.|.|..
T Consensus       205 ~~~~v~v~e  213 (226)
T 4f80_A          205 KTASISIAD  213 (226)
T ss_dssp             EEEEECCCT
T ss_pred             EEEEEEECC
Confidence            566666543

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.05  E-value=6.5e-10  Score=65.94  Aligned_cols=86  Identities=20%  Similarity=0.254  Sum_probs=57.3

Q ss_pred             EEecCCCEEEEEeeec--cCCCeEEEEeCCEEeeccCC-----CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEG--KPEPTIEWYKDGELVETSKS-----DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~--~p~p~v~w~k~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+.+|+.+.|.|...+  .+.+.+.|+|++..+.....     ....+.....++.+    .|.+++.+|.|.|.|.+.|
T Consensus         7 ~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL----~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDL----KIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCE----EESSCCGGGCEEEEEEEEE
T ss_pred             EEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcE----EEcccccccCEEEEEEEEe
Confidence            4678999999995433  45678999999975531100     01122233344544    4577799999999999999


Q ss_pred             CCccc-eeeeEEEEEEee
Q psy8666          75 SVGTA-VSRNATLQVAVV   91 (124)
Q Consensus        75 ~~~~~-~~~~~~l~v~~~   91 (124)
                      ..|.. .+..+.|.|..+
T Consensus        83 ~~g~~~~~~~~~l~V~~~  100 (176)
T 1hng_A           83 TNGTRILNKALDLRILEM  100 (176)
T ss_dssp             TTCCEEEEEEEEEEEECC
T ss_pred             CCCCEEEEEEEEEEEeCC
Confidence            88875 345667777654

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.05  E-value=1.9e-09  Score=59.46  Aligned_cols=90  Identities=21%  Similarity=0.233  Sum_probs=52.2

Q ss_pred             EEecCCCEEEEEeee-ccCCCe----EEEEeCCEEeeccC--------CCCCceEEEccCC--c--EEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPT----IEWYKDGELVETSK--------SDAKSQRVILPTG--S--LFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~----v~w~k~g~~~~~~~--------~~~~~~~~~~~~~--~--~~~~~~i~~~~~~d   64 (124)
                      .+..|+++.|.|... +.+.+.    +.|+|++.......        .....+.......  .  ......|.+++.+|
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D   90 (118)
T 3udw_C           11 PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVED   90 (118)
T ss_dssp             EEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGGG
T ss_pred             EEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChHH
Confidence            467899999999984 444443    89999853211000        0001122222210  0  01223457779999


Q ss_pred             CeEEEEEeEe-CCccceeeeEEEEEEeee
Q psy8666          65 GGVYWCLARN-SVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        65 ~g~y~C~~~~-~~~~~~~~~~~l~v~~~~   92 (124)
                      .|.|.|.+.+ ..+.. ...+.|.|..+|
T Consensus        91 ~G~Y~C~v~~~~~~~~-~~~~~L~V~~~P  118 (118)
T 3udw_C           91 EGNYTCLFVTFPQGSR-SVDIWLRVLAKP  118 (118)
T ss_dssp             CEEEEEEEEEETTEEE-EEEEEEEEEC--
T ss_pred             CeEEEEEEEECCCCCc-cceEEEEEEeCC
Confidence            9999999998 55544 567777776654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.04  E-value=1.7e-09  Score=75.32  Aligned_cols=71  Identities=18%  Similarity=0.391  Sum_probs=56.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|+|..+..             ...+    .|..+...|.|.|.|.+.|..|.. .
T Consensus       570 ~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~-------------~~~L----~i~~~~~~d~G~Y~C~a~N~~G~~-~  631 (642)
T 1e07_A          570 SYLSGANLNLSCHSASNPSPQYSWRINGIPQQH-------------TQVL----FIAKITPNNNGTYACFVSNLATGR-N  631 (642)
T ss_pred             eEEcCCcEEEEEEeccCCCCeEEEEECCEECcc-------------CceE----EECcccccCCeEEEEEEEecccCc-c
Confidence            356799999999999999999999999987652             1222    345558999999999999999987 5


Q ss_pred             eeEEEEEEe
Q psy8666          82 RNATLQVAV   90 (124)
Q Consensus        82 ~~~~l~v~~   90 (124)
                      ..+.|.|..
T Consensus       632 ~s~~l~V~v  640 (642)
T 1e07_A          632 NSIVKSITV  640 (642)
T ss_pred             eeEEEEEEE
Confidence            567666654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.04  E-value=7.5e-09  Score=70.48  Aligned_cols=91  Identities=19%  Similarity=0.291  Sum_probs=64.2

Q ss_pred             EEecCCCEEEEEeeeccCCCe-EEEEeCCEEe--eccCCCCCceEEEccC--CcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELV--ETSKSDAKSQRVILPT--GSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~--~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+..|+.+.|.|.+.+.|.|. +.|++++..+  ...     ........  ........|..++..|.|.|.|.+.|..
T Consensus       222 ~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~  296 (524)
T 2ec8_A          222 LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK-----YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF  296 (524)
T ss_dssp             EEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEE-----EEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSS
T ss_pred             eEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccc-----cccccccCCccceEEEEEECCCCHHHCEEEEEEEEecC
Confidence            367899999999999989887 9999998763  211     11111111  1122334567779999999999999999


Q ss_pred             ccceeeeEEEEEEeeeeeeeec
Q psy8666          77 GTAVSRNATLQVAVVIFFISFF   98 (124)
Q Consensus        77 ~~~~~~~~~l~v~~~~~~~~~~   98 (124)
                      |.. ...+.|.|..+|.+...+
T Consensus       297 g~~-~~~~~l~V~~~p~~~~~~  317 (524)
T 2ec8_A          297 GSA-NVTTTLEVVDKGFINIFP  317 (524)
T ss_dssp             CEE-EEEEEEEEESSCEEEEEE
T ss_pred             Cce-EEEEEEEEeccCceEeec
Confidence            887 458888888777665443

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.03  E-value=2.6e-09  Score=66.37  Aligned_cols=72  Identities=26%  Similarity=0.404  Sum_probs=54.4

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.+ .+.|+|+|..+...            ...+    .|..++..|.|.|.|.+.|..+.. 
T Consensus        12 ~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~------------~~~l----~i~~~~~~d~G~Y~C~~~~~~~s~-   74 (262)
T 3rjd_A           12 SVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------------TPSY----RITSASVNDSGEYRCQRGLSGRSD-   74 (262)
T ss_dssp             EEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC------------SSEE----EESSCCGGGCEEEEEEESSSCCCC-
T ss_pred             EeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc------------CCeE----EEecCCcccCeEEEEEEecCCccc-
Confidence            57789999999999888887 89999999876521            1222    356668999999999998865443 


Q ss_pred             eeeEEEEEEeee
Q psy8666          81 SRNATLQVAVVI   92 (124)
Q Consensus        81 ~~~~~l~v~~~~   92 (124)
                        .+.|.|..++
T Consensus        75 --~~~l~v~~~~   84 (262)
T 3rjd_A           75 --PIQLEIHRGW   84 (262)
T ss_dssp             --CEEEEEECSS
T ss_pred             --cEEEEEeccc
Confidence              5666666544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.03  E-value=4.2e-09  Score=65.39  Aligned_cols=74  Identities=20%  Similarity=0.351  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+ .+.|.+.+.|++++..+...          .....+    .|..++..|.|.|.|.+.|..+.. 
T Consensus        93 ~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~----------~~~~~l----~i~~~~~~d~G~Y~C~~~n~~~~~-  157 (262)
T 3rjd_A           93 VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF----------HWNSNL----TILKTNISHNGTYHCSGMGKHRYT-  157 (262)
T ss_dssp             EEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE----------EECCCE----EESSCCGGGCEEEEEEEESSSEEE-
T ss_pred             EEecCCeEEEEEEccCCCCCceEEEEECCcccccc----------CCCCeE----EEEECChhhCEEEEEEEeCCCCcc-
Confidence            35689999999999 67788899999999876521          122333    356668999999999999988655 


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus       158 ~~~~~l~V~~  167 (262)
T 3rjd_A          158 SAGISVTVKE  167 (262)
T ss_dssp             EECEEEEEEC
T ss_pred             ccceEEEecc
Confidence            5677777765

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.03  E-value=9.3e-09  Score=61.36  Aligned_cols=81  Identities=17%  Similarity=0.159  Sum_probs=53.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc-ce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT-AV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~-~~   80 (124)
                      .+.+|+++.|.|.+.+ +.+.+.|+|+|..+......   .   ...... ....|.+++..|.|.|.|.+.|..+. ..
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~---~---~~~~~~-~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~   85 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK---P---PERINK-VKFYIPDMNSRMAGQYSCIYRVGELWSEP   85 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS---S---CTTCCE-EEEEESSCCGGGCEEEEEEEEETTEECCC
T ss_pred             cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc---c---CCCcce-eEEEeCcCCcccCeEEEEEecCCCCCCCC
Confidence            3678999999999865 45678999999876521000   0   001111 12346778999999999999886543 22


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus        86 s~~~~l~V~~   95 (188)
T 1oll_A           86 SNLLDLVVTE   95 (188)
T ss_dssp             CCCEEEEEES
T ss_pred             CCceEEEecc
Confidence            5567777753

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.03  E-value=1.5e-09  Score=59.23  Aligned_cols=78  Identities=18%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC---ccc
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV---GTA   79 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~---~~~   79 (124)
                      +..|++++|.|...+. ...+.|||+|..+...       . ....... ....|..++.+|.|.|.|.+.|..   ...
T Consensus        16 v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~-------~-~~~~~~~-~~l~I~~v~~~dsG~Y~C~~~n~~~~~~s~   85 (105)
T 2vsd_A           16 VSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDK-------E-KDKEQDA-AEFSFAVTNLEDAGTYQCRYQVSEPLWTSN   85 (105)
T ss_dssp             CCTTCEEEEEEECCSS-CEEEEEEETTEEEEEE-------E-ECTTCSE-EEEEEECCSGGGCEEEEEEEEEETTEEECC
T ss_pred             cCcCCCEEEEEEcCCC-CcEEEEEECCccceee-------e-ccCCCCE-EEEEECCCCHHHCeEEEEEEEcCCCCcccC
Confidence            5679999999998754 4567899999765421       1 1111221 223456779999999999999853   233


Q ss_pred             eeeeEEEEEEe
Q psy8666          80 VSRNATLQVAV   90 (124)
Q Consensus        80 ~~~~~~l~v~~   90 (124)
                      .+..+.|.|..
T Consensus        86 ~Sdpl~L~V~~   96 (105)
T 2vsd_A           86 QSDPVELVLTI   96 (105)
T ss_dssp             CCCCEEECCC-
T ss_pred             CCCCEEEEEEE
Confidence            45666666543

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.02  E-value=7.6e-10  Score=66.68  Aligned_cols=89  Identities=19%  Similarity=0.279  Sum_probs=59.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccC-------CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK-------SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|++..+....       ....... ......+    .|..++..|.|.|.|.+.+
T Consensus        12 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~L----~i~~v~~~D~G~Y~C~~~~   86 (212)
T 1f97_A           12 QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV-TFSSSGI----TFSSVTRKDNGEYTCMVSE   86 (212)
T ss_dssp             EEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTE-EEETTEE----EESCCCGGGCEEEEEEEEE
T ss_pred             EEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcE-EeeceeE----EEcccCcccCeEEEEEEEc
Confidence            46789999999999988999999999765421100       0000111 1122333    3566699999999999999


Q ss_pred             CCccc-eeeeEEEEEEeeeeee
Q psy8666          75 SVGTA-VSRNATLQVAVVIFFI   95 (124)
Q Consensus        75 ~~~~~-~~~~~~l~v~~~~~~~   95 (124)
                      ..|.. .+..+.|.|..+|.+.
T Consensus        87 ~~g~~~~~~~~~l~V~~~p~~~  108 (212)
T 1f97_A           87 EGGQNYGEVSIHLTVLVPPSKP  108 (212)
T ss_dssp             TTSSSEEEEEEEEEEEBCCCCC
T ss_pred             cCCCcccEEEEEEEEEcCCCCc
Confidence            87622 2456778887766543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.02  E-value=5.3e-10  Score=67.19  Aligned_cols=81  Identities=19%  Similarity=0.336  Sum_probs=55.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC-cc-c
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV-GT-A   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~-~~-~   79 (124)
                      .+.+|+.+.|.|.+.+.|. .+.|+|+|..+.....   ..........+    .|..++..|.|.|.|.+.|.. +. .
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~---~~~~~~~~~~L----~i~~v~~~D~G~Y~C~a~n~~~g~~~   86 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITR---IPQELVKKGQF----PIPSITWEHTGRYRCYYGSDTAGRSE   86 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHT---SCHHHHTTTEE----EESSCCGGGCEEEEEEEEETTTEECC
T ss_pred             cccCCCcEEEEEEecCCCc-EEEEEECCcccccccc---ccccCCcccEE----EECCCCHHHCeEEEEEEECCCCCccc
Confidence            4678999999999988765 6999999876642100   00001122333    356779999999999999987 52 2


Q ss_pred             eeeeEEEEEEe
Q psy8666          80 VSRNATLQVAV   90 (124)
Q Consensus        80 ~~~~~~l~v~~   90 (124)
                      .+..+.|.|..
T Consensus        87 ~s~~~~l~V~~   97 (198)
T 1ugn_A           87 SSDPLELVVTG   97 (198)
T ss_dssp             CCCCEEEEEEC
T ss_pred             CCccEEEEEcc
Confidence            25567788776

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.02  E-value=1.2e-08  Score=61.37  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=52.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC----c
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV----G   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~----~   77 (124)
                      .+.+|+++.|.|.+.+ +.+.+.|+|+|..+....     ...............|..++..|.|.|.|.+.+..    .
T Consensus        18 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-----~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~   91 (201)
T 1nkr_A           18 LVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLR-----LIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQV   91 (201)
T ss_dssp             EEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEE-----EECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCC
T ss_pred             ccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcce-----eeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccc
Confidence            4678999999999864 778999999987543210     00000111112233567789999999999998642    1


Q ss_pred             cceeeeEEEEEEe
Q psy8666          78 TAVSRNATLQVAV   90 (124)
Q Consensus        78 ~~~~~~~~l~v~~   90 (124)
                      ...+..+.|.|..
T Consensus        92 ~~~s~~~~l~V~~  104 (201)
T 1nkr_A           92 SAPSDPLDIVIIG  104 (201)
T ss_dssp             CCCCCCEEEEEEC
T ss_pred             cCCCCCEEEEeec
Confidence            2224566777754

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.01  E-value=8.9e-09  Score=62.96  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             EEecCCCEEEEEeeeccCCC---eEEEEeCCEEe-----------eccCC-CCCceEEEccCC--cEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP---TIEWYKDGELV-----------ETSKS-DAKSQRVILPTG--SLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p---~v~w~k~g~~~-----------~~~~~-~~~~~~~~~~~~--~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.+.+   .+.|+|++...           ..... ....+.......  .......|.+++.+|
T Consensus        15 ~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D   94 (226)
T 4f80_A           15 LAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASD   94 (226)
T ss_dssp             EEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGGG
T ss_pred             EEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchHH
Confidence            56789999999998776554   58999876321           11000 000111111110  112234568889999


Q ss_pred             CeEEEEEeEeCCccc
Q psy8666          65 GGVYWCLARNSVGTA   79 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~   79 (124)
                      .|.|.|.+.|..+..
T Consensus        95 ~G~Y~C~a~n~~~~~  109 (226)
T 4f80_A           95 SGKYLCYFQDGDFYE  109 (226)
T ss_dssp             CEEEEEEEEETTEEE
T ss_pred             CeeEEEEEECCCcEE
Confidence            999999999987765

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.01  E-value=5e-10  Score=74.83  Aligned_cols=69  Identities=29%  Similarity=0.459  Sum_probs=54.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..             .+...  .    ++..|.|.|.|.+.|..|.. +
T Consensus       381 ~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~-------------~g~~~--~----v~~~d~G~Y~C~a~N~~G~~-~  440 (450)
T 1z7z_I          381 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP-------------IGESV--T----VTRDLEGTYLCRARSTQGEV-T  440 (450)
T ss_dssp             EEETTCEECCCCCCEEESCCEEEEEETTTEECC-------------TTSCE--E----CCGGGCEEEEEEEEETTEEE-E
T ss_pred             eEcCCCeEEEEEecccCCCCcEEEEECCcccCC-------------CCCeE--e----EehhhCeEEEEEEEeCCCce-e
Confidence            467899999999999999999999999873321             12221  2    37899999999999999988 5


Q ss_pred             eeEEEEEEe
Q psy8666          82 RNATLQVAV   90 (124)
Q Consensus        82 ~~~~l~v~~   90 (124)
                      ..+.|.|..
T Consensus       441 ~~~~l~V~~  449 (450)
T 1z7z_I          441 REVTVNVLS  449 (450)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEc
Confidence            677777754

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.01  E-value=2.5e-09  Score=64.43  Aligned_cols=89  Identities=26%  Similarity=0.309  Sum_probs=58.2

Q ss_pred             EEecCCCEEEEEeeeccC----CCeEEEEeC----------------CEEeeccCCCCCceEEEcc------CCcEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP----EPTIEWYKD----------------GELVETSKSDAKSQRVILP------TGSLFFLR   55 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p----~p~v~w~k~----------------g~~~~~~~~~~~~~~~~~~------~~~~~~~~   55 (124)
                      .+..|+.+.|.|.+.+.+    .+.+.|+++                +............+.....      ...+    
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L----   86 (214)
T 3jz7_A           11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI----   86 (214)
T ss_dssp             EEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE----
T ss_pred             EEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE----
Confidence            567899999999998776    468999983                3222210000011111111      1223    


Q ss_pred             EEcCCCccCCeEEEEEeEeCCccceeeeEEEEEEeeeeee
Q psy8666          56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFI   95 (124)
Q Consensus        56 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~~~~~   95 (124)
                      .|.+++.+|.|.|.|.+.+..+.. +..+.|.|..+|.+.
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~  125 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGT  125 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSC
T ss_pred             EEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCc
Confidence            456779999999999999988766 667888888776544

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.00  E-value=3.5e-11  Score=84.95  Aligned_cols=83  Identities=25%  Similarity=0.451  Sum_probs=0.0

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.|.|.|.+.|+|+|..+....     ..... ..+.+.    |..+..+|.|.|.|.+.|..|.. .
T Consensus       678 v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~-----~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~-~  747 (772)
T 3v2a_R          678 TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS-----GIVLKDGNRNLT----IRRVRKEDEGLYTCQACSVLGCA-K  747 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeCCCCEEEEEEeCccCCCeEEEEECCeECcCCC-----CeEEcCCCcEEE----ECcCCHHHCEEEEEEEEeCCcce-e
Confidence            5679999999999999999999999998776421     11111 123333    44558999999999999999998 5


Q ss_pred             eeEEEEEEeeeeee
Q psy8666          82 RNATLQVAVVIFFI   95 (124)
Q Consensus        82 ~~~~l~v~~~~~~~   95 (124)
                      ..+.|.|..+|...
T Consensus       748 ~~~~l~V~~~p~~~  761 (772)
T 3v2a_R          748 VEAFFIIEGAQEKT  761 (772)
T ss_dssp             --------------
T ss_pred             EEEEEEEECCCCcc
Confidence            68899998877544

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.00  E-value=9.8e-09  Score=58.51  Aligned_cols=88  Identities=15%  Similarity=0.229  Sum_probs=54.1

Q ss_pred             EEecCCCEEEEEeeeccC---CCeEEEEeCCEE--ee--ccC--------CCCCceEEEccCC--cEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP---EPTIEWYKDGEL--VE--TSK--------SDAKSQRVILPTG--SLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p---~p~v~w~k~g~~--~~--~~~--------~~~~~~~~~~~~~--~~~~~~~i~~~~~~d   64 (124)
                      .+..|+++.|.|...+.+   .+.+.|++++..  +.  ...        .....+.......  .......|.+++.+|
T Consensus        17 ~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   96 (139)
T 1pko_A           17 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSD   96 (139)
T ss_dssp             EEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGG
T ss_pred             EEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCHHH
Confidence            467899999999987654   367999997641  11  000        0001122121110  112334578889999


Q ss_pred             CeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+..+.. ...+.|.|..
T Consensus        97 ~G~Y~C~v~~~~~~~-~~~~~L~V~~  121 (139)
T 1pko_A           97 EGGYTCFFRDHSYQE-EAAVELKVED  121 (139)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             CEEEEEEEEcCCCce-EEEEEEEEec
Confidence            999999999987755 5567777764

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.00  E-value=5.4e-09  Score=63.21  Aligned_cols=88  Identities=18%  Similarity=0.342  Sum_probs=55.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--cc-----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--TS-----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|+  |..+.  ..     ................ ....|.+++.+|.|.|.|.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~   89 (210)
T 1lk3_L           11 TVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTD-FTLTIDPVEADDTAIYFCQQ   89 (210)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             EEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCE-EEEEECCCCHHHCeEEEEEE
Confidence            467899999999999888889999984  22210  00     0000111111111111 23456788999999999999


Q ss_pred             EeCCccceeeeEEEEEEe
Q psy8666          73 RNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~   90 (124)
                      .+..+........|.|..
T Consensus        90 ~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           90 SWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             CSSSSCEECCCEEEEECC
T ss_pred             EcCCCceeCCCEEEEEcC
Confidence            998765434455666654

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.00  E-value=6.1e-09  Score=57.50  Aligned_cols=85  Identities=19%  Similarity=0.202  Sum_probs=54.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEe-----ec---------cCCCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELV-----ET---------SKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+++.|.|.....+.+.+.|||.....     ..         .......+.....++++.    |.+++.+|.|.
T Consensus        11 ~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~----I~nvt~~D~G~   86 (111)
T 2qsq_A           11 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL----IQNIIQNDAGF   86 (111)
T ss_dssp             EEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEE----ECSCCGGGCEE
T ss_pred             eeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEE----EccCcccCCeE
Confidence            4678999999997533334568999865211     10         000112344455667665    55669999999


Q ss_pred             EEEEeEeCCccceeeeEEEEEEe
Q psy8666          68 YWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      |.|.+.+..+......+.|.|..
T Consensus        87 Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           87 YTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             EEEEEEETTSCCEEEEEEEEEEC
T ss_pred             EEEEEEeCCCcEEEEEEEEEEec
Confidence            99999998664335566776653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.00  E-value=1.5e-08  Score=61.44  Aligned_cols=87  Identities=15%  Similarity=0.248  Sum_probs=53.5

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCC--EEe---eccCC--------CCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDG--ELV---ETSKS--------DAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g--~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+.+.|.|.+.+. |.+.+.|+|..  ...   .....        ....+........ .....|.+++.+|.|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~D~G~   89 (218)
T 3s96_B           11 SFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGA-DRYLSISNIQPEDEAI   89 (218)
T ss_dssp             EEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETT-EEEEEESSCCGGGCEE
T ss_pred             EECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCc-eEEEEEccCCcccCEE
Confidence            56789999999999988 89999999832  110   00000        0001111111111 1224568889999999


Q ss_pred             EEEEeEeCCc----cceeeeEEEEEE
Q psy8666          68 YWCLARNSVG----TAVSRNATLQVA   89 (124)
Q Consensus        68 y~C~~~~~~~----~~~~~~~~l~v~   89 (124)
                      |.|.+.+..+    ......+.|.|.
T Consensus        90 Y~C~~~~~~~~~~~~~~~~~~~l~V~  115 (218)
T 3s96_B           90 YICGVGDTIKEQFVYVFGGGTKVTVL  115 (218)
T ss_dssp             EEEEEEEEETTEEEEEECCCEEEEEE
T ss_pred             EEEEEecCCCCceeEEEcCcEEEEEe
Confidence            9999998765    122345677776

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.99  E-value=3.8e-09  Score=75.34  Aligned_cols=90  Identities=21%  Similarity=0.275  Sum_probs=63.0

Q ss_pred             EecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.+.+.| .+.|+++|..+....    ........... ....|..+...|.|.|.|.+.|..|.. .
T Consensus       631 ~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~----~~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~  704 (816)
T 3dmk_A          631 AQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDL----GITTSRVGRRG-SVLTIEAVEASHAGNFTCHARNLAGHQ-Q  704 (816)
T ss_dssp             EESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGG----TCEEEEETTTE-EEEEEESCCGGGCEEEEEEEECSSCEE-E
T ss_pred             cCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCC----CeeEEEcCCCe-eEEEEccCChhhCEEEEEEEEeCCccE-E
Confidence            5679999999998766554 899999998765321    11111111111 223456779999999999999999887 5


Q ss_pred             eeEEEEEEeeeeeeeec
Q psy8666          82 RNATLQVAVVIFFISFF   98 (124)
Q Consensus        82 ~~~~l~v~~~~~~~~~~   98 (124)
                      ..+.|.|..+|.+...+
T Consensus       705 ~~~~l~V~~~P~~~~~~  721 (816)
T 3dmk_A          705 FTTPLNVYVPPRWILEP  721 (816)
T ss_dssp             EEEEECEEEEEEEEECC
T ss_pred             EEEEEEEEeCCceeeec
Confidence            67888888888765443

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.98  E-value=1.4e-08  Score=61.04  Aligned_cols=86  Identities=19%  Similarity=0.187  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeecc--------------CCCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETS--------------KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+..|+.+.|.|...+.+.+.+.|++++......              ......+.....++.+    .|.+++..|.|.
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L----~i~~v~~~D~G~   85 (208)
T 3r4d_A           10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL----LFQMITMKDMGV   85 (208)
T ss_dssp             EEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCE----EECSCCGGGCEE
T ss_pred             eeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeE----EEccccccCCeE
Confidence            4678999999999878888899999875321110              0000112222333444    356669999999


Q ss_pred             EEEEeEeCCccceeeeEEEEEEee
Q psy8666          68 YWCLARNSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v~~~   91 (124)
                      |.|.+.+..+......+.|.|..+
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~  109 (208)
T 3r4d_A           86 YTLDMTDENYRRTQATVRFHVHQP  109 (208)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEECC
T ss_pred             EEEEEEcccCceeEEEEEEEeccC
Confidence            999999986444356677777654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.98  E-value=5.1e-09  Score=63.34  Aligned_cols=86  Identities=16%  Similarity=0.253  Sum_probs=53.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eeccC----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VETSK----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|..  ..   +....    .....+......... ....|.+++.+|.|.|.|.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~   90 (213)
T 3r06_A           12 PASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRD-SSFTISSLESEDIGSYYCQQ   90 (213)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCSEEEEEE
T ss_pred             EecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCE-EEEEECCCCcccCEEEEEec
Confidence            4678999999999998889999999832  11   11000    000111111111111 23456888999999999999


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      .+..+........|.|
T Consensus        91 ~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           91 YYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             CSSSSCEECCCEEEEE
T ss_pred             ccCCceEEcCCceEEE
Confidence            9876544445566776

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.98  E-value=1.4e-09  Score=61.95  Aligned_cols=88  Identities=16%  Similarity=0.334  Sum_probs=53.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc-
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT-   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~-   78 (124)
                      .+.+|+.+.|.|...+.  +.+.|||+  +..+....+ ...++.....+.. ....|.+++.+|.|.|.|.+.|..+. 
T Consensus        28 ~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~-~~~r~~~~~~~~~-~~L~I~~~~~~DsG~Y~C~a~n~~g~~  103 (133)
T 3khq_A           28 AKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVS-EEGRIVQTQNGSV-YTLTIQNIQYEDNGIYFCKQKCDSANH  103 (133)
T ss_dssp             EECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCC-TTTTEEEEEETTE-EEEEECSCCGGGCEEEEEEESSCC---
T ss_pred             EEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEE-eCCCEEEEcCCCE-EEEEECCCChHHCEEEEEEEEeCCCCc
Confidence            46789999999999876  88999986  322211000 1122222222322 33456888999999999999987642 


Q ss_pred             --ceeeeEEEEEEeeee
Q psy8666          79 --AVSRNATLQVAVVIF   93 (124)
Q Consensus        79 --~~~~~~~l~v~~~~~   93 (124)
                        .......|.|...|.
T Consensus       104 ~~~~g~gt~L~V~~~p~  120 (133)
T 3khq_A          104 NVTDSCGTELLVLGFST  120 (133)
T ss_dssp             ----CCCEEEEEC----
T ss_pred             ceeECCCEEEEEEeccc
Confidence              234567888877543

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.97  E-value=1.3e-09  Score=64.71  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=44.9

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +..+.|.|.+.+.|.|.+.|+|+|..+....             .+.+..+    +..|.|.|.|.+.|..|..
T Consensus       110 ~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~-------------~~~i~~~----~~~d~G~Y~C~a~N~~g~~  166 (176)
T 1hng_A          110 CSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------------QKTMSYQ----WTNLRAPFKCKAVNRVSQE  166 (176)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEETTEEEEEES-------------SSEEEEE----CSCCSSCEEEEEEETTEEE
T ss_pred             CCcEEEEEEecCCCCcEEEEEECCEECCCCC-------------cEEEEEE----EccCCeEEEEEEEecCCCc
Confidence            4568999999999999999999998876321             1222233    7899999999999999876

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.97  E-value=4.8e-10  Score=67.41  Aligned_cols=83  Identities=30%  Similarity=0.544  Sum_probs=56.0

Q ss_pred             EEecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCC----CceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDA----KSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~----~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+..|+.+.|.|.+ .+.|.|.+.|++++..+.......    ...... .....+    .|..++.+|.|.|.|.+.|.
T Consensus       118 ~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~n~  193 (209)
T 1nbq_A          118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL----VFDPLSASDTGEYSCEARNG  193 (209)
T ss_dssp             EEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCE----EESSCCGGGCCCEEEEEECS
T ss_pred             ceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceE----EEEeccccCCeEEEEEEeCC
Confidence            35679999999996 899999999999998765432110    001111 122333    35666899999999999999


Q ss_pred             Cccc-eeeeEEEEE
Q psy8666          76 VGTA-VSRNATLQV   88 (124)
Q Consensus        76 ~~~~-~~~~~~l~v   88 (124)
                      .|.. .+..+.|.|
T Consensus       194 ~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          194 YGTPMTSNAVRMEA  207 (209)
T ss_dssp             SSCCEECCCBCCEE
T ss_pred             cCcccccccEEEEE
Confidence            9877 344444443

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.97  E-value=9.1e-09  Score=62.23  Aligned_cols=87  Identities=14%  Similarity=0.292  Sum_probs=55.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee---cc-CC---CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE---TS-KS---DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~---~~-~~---~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|.  +....   .. ..   ....+......... ....|.+++.+|.|.|.|.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~   89 (213)
T 3mj8_L           11 SVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNM-ATLTISKAQAGDEADYYCQS   89 (213)
T ss_dssp             EEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             EEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCE-EEEEECCCChhhCEEEEEEe
Confidence            577899999999999889999999982  22111   00 00   00111111111111 23456888999999999999


Q ss_pred             EeCCc--cceeeeEEEEEE
Q psy8666          73 RNSVG--TAVSRNATLQVA   89 (124)
Q Consensus        73 ~~~~~--~~~~~~~~l~v~   89 (124)
                      .+..+  ......+.|.|.
T Consensus        90 ~~~~~~~~~~~~~~~l~V~  108 (213)
T 3mj8_L           90 WDGTNSAWVFGSGTKVTVL  108 (213)
T ss_dssp             EETTTTEEEEBCCEEEEEE
T ss_pred             ccCCcceeEEcCceEEEEe
Confidence            99887  233556777777

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.97  E-value=5.8e-09  Score=68.01  Aligned_cols=86  Identities=10%  Similarity=-0.011  Sum_probs=56.7

Q ss_pred             EEecCCCEEEEEeeec-----cCCCeEEEEeCCEEeeccCCC---CCceEEEc-----------cCCcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEG-----KPEPTIEWYKDGELVETSKSD---AKSQRVIL-----------PTGSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-----~p~p~v~w~k~g~~~~~~~~~---~~~~~~~~-----------~~~~~~~~~~i~~~~~   62 (124)
                      .+.+|+.+.|.|.+.+     .|.|.+.|+++|..+......   ........           ..+.  ....|..++.
T Consensus       187 ~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~  264 (363)
T 1wio_A          187 YKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLP--LHLTLPQALP  264 (363)
T ss_dssp             EEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSS--CEEEESSBCG
T ss_pred             EEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCc--eEEEEccCCc
Confidence            3567999999998877     778899999998765431000   00111110           1111  1234567789


Q ss_pred             cCCeEEEEEeEeC--CccceeeeEEEEEEe
Q psy8666          63 QDGGVYWCLARNS--VGTAVSRNATLQVAV   90 (124)
Q Consensus        63 ~d~g~y~C~~~~~--~~~~~~~~~~l~v~~   90 (124)
                      .|.|.|.|.+.|.  .|.. +..+.|.|..
T Consensus       265 ~d~G~Y~C~a~n~~~~g~~-~~~~~l~V~~  293 (363)
T 1wio_A          265 QYAGSGNLTLALEAKTGKL-HQEVNLVVMR  293 (363)
T ss_dssp             GGCEEEEEEECBTTTTCCE-EEEEEEEEEE
T ss_pred             CcCcEEEEEEEEhhhcCeE-EEEEeEEEEE
Confidence            9999999999999  8866 5677777763

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.96  E-value=3e-09  Score=67.92  Aligned_cols=68  Identities=24%  Similarity=0.366  Sum_probs=51.1

Q ss_pred             EecCCCEEEEEee------eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeE-eC
Q psy8666           3 VAKNEPVTLNCKA------EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR-NS   75 (124)
Q Consensus         3 ~~~G~~~~l~C~~------~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~-~~   75 (124)
                      +..|+.+.|.|.+      .+.|.|.+.|+|++..+....     .........+    .|..++..|.|.|.|.+. |.
T Consensus       115 ~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~-----~~~~~~~~~L----~i~~v~~~d~G~Y~C~a~~n~  185 (315)
T 1itb_B          115 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN-----IHFSGVKDRL----IVMNVAEKHRGNYTCHASYTY  185 (315)
T ss_dssp             EETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCS-----SSEEEETTEE----EESSCCGGGCEEEEEEEEEEE
T ss_pred             EecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCcc-----ceEeecCceE----EEEeceehhCcEEEEEEEcCC
Confidence            5679999999998      788999999999998875321     1122233333    356779999999999999 77


Q ss_pred             Cccc
Q psy8666          76 VGTA   79 (124)
Q Consensus        76 ~~~~   79 (124)
                      .|..
T Consensus       186 ~g~~  189 (315)
T 1itb_B          186 LGKQ  189 (315)
T ss_dssp             TTEE
T ss_pred             CCcE
Confidence            7765

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.96  E-value=9e-09  Score=62.27  Aligned_cols=89  Identities=18%  Similarity=0.205  Sum_probs=54.6

Q ss_pred             EecCCCEEEEEeeecc-CC--CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           3 VAKNEPVTLNCKAEGK-PE--PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~-p~--p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +..|+.+.|.|.+.+. |.  +.+.|+|++..+...........  ...........+......|.|.|.|.+.|..+..
T Consensus       103 ~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~--~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~  180 (202)
T 1vca_A          103 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADR--KSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM  180 (202)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSS--CCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCC
T ss_pred             EcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCc--CcceEEEEEEEEEeeeccCCCeEEEEEEccccCC
Confidence            5689999999999875 43  36899999987753210000000  0001111222344446677899999999987652


Q ss_pred             ------eeeeEEEEEEeeee
Q psy8666          80 ------VSRNATLQVAVVIF   93 (124)
Q Consensus        80 ------~~~~~~l~v~~~~~   93 (124)
                            ....+.|.|.++|.
T Consensus       181 ~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          181 DSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             TTSCSEEEEEEECCEECCC-
T ss_pred             CCcceeEeeEEEEEEecCCC
Confidence                  34567788877764

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.96  E-value=1.1e-09  Score=65.78  Aligned_cols=87  Identities=24%  Similarity=0.344  Sum_probs=55.7

Q ss_pred             CEEecCCCEEEEEeee----ccCCCeEEEEeCCEEeeccCCCC-------CceEEE-c-cCCcEEEEEEEcCCCccCCeE
Q psy8666           1 MVVAKNEPVTLNCKAE----GKPEPTIEWYKDGELVETSKSDA-------KSQRVI-L-PTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~----~~p~p~v~w~k~g~~~~~~~~~~-------~~~~~~-~-~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      +.+..|+.+.|.|.+.    +.|.+.+.|++++..+.......       ..+... . ....+    .|.+++.+|.|.
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L----~I~~v~~~D~G~   79 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSI----VILALRPSDEGT   79 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEE----EECSCCGGGCEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEE----EEecccchhCeE
Confidence            3578899999999985    44678899999988763110000       001111 1 12233    456779999999


Q ss_pred             EEEEeEeCCccce----eeeEEEEEEee
Q psy8666          68 YWCLARNSVGTAV----SRNATLQVAVV   91 (124)
Q Consensus        68 y~C~~~~~~~~~~----~~~~~l~v~~~   91 (124)
                      |.|.+.+..+...    ...+.|.|..+
T Consensus        80 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~  107 (201)
T 1dr9_A           80 YECVVLKYEKDAFKREHLAEVTLSVKAD  107 (201)
T ss_dssp             EEEEEEECCTTSCEEEEEEEEEEEEECC
T ss_pred             EEEEEEcCCCCccccccccEEEEEEcCC
Confidence            9999999776542    23556666554

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.96  E-value=9.3e-10  Score=70.81  Aligned_cols=87  Identities=28%  Similarity=0.427  Sum_probs=58.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe----CCEEeeccCCCCCceEEEccCC------cEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK----DGELVETSKSDAKSQRVILPTG------SLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k----~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|    +|..+.....   .........      .......|..++..|.|.|.|.
T Consensus       233 ~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  309 (334)
T 1ry7_B          233 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT---PYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCL  309 (334)
T ss_dssp             EEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSS---BCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEE
T ss_pred             EEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCC---eeEEEeecCccccccccccEEEEccCCHHHCEEEEEE
Confidence            35679999999999999999999999    5655442210   000000000      0001124566689999999999


Q ss_pred             eEeCCccceeeeEEEEEEeee
Q psy8666          72 ARNSVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        72 ~~~~~~~~~~~~~~l~v~~~~   92 (124)
                      +.|..|.. ...+.|.|...+
T Consensus       310 a~N~~G~~-~~~~~l~V~~~~  329 (334)
T 1ry7_B          310 AGNSIGFS-HHSAWLVVLPAE  329 (334)
T ss_dssp             EEESSCCE-EEEEEEEEECSC
T ss_pred             EeCCCCeE-EEEEEEEEEECC
Confidence            99999987 567788876644

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.96  E-value=9.5e-09  Score=72.79  Aligned_cols=91  Identities=21%  Similarity=0.235  Sum_probs=64.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEE-EE--eCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIE-WY--KDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~-w~--k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+..|+.+.|.|.+.|.|.|.+. |+  ++|..+...      ...............|..+...|.|.|.|.+.|..|.
T Consensus       175 ~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~------~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~  248 (731)
T 2v5y_A          175 EVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK------EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV  248 (731)
T ss_dssp             EEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEE------EEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEE
T ss_pred             EEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccccc------ceEEeccccceEEEEEcccccccCeEEEEEEECCCCC
Confidence            46789999999999999999987 77  677665421      1111122222234456778999999999999999997


Q ss_pred             ceeeeEEEEEEeeeeeeeec
Q psy8666          79 AVSRNATLQVAVVIFFISFF   98 (124)
Q Consensus        79 ~~~~~~~l~v~~~~~~~~~~   98 (124)
                      ..+....|.|..+|.++..+
T Consensus       249 ~~s~~~~l~V~~~P~~~~~p  268 (731)
T 2v5y_A          249 GISNYAELVVKEPPVPIAPP  268 (731)
T ss_dssp             EECCCEEEEEECCCCBSSCC
T ss_pred             cceeeEEEEEecCCCCCCCc
Confidence            43667788888777654433

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.96  E-value=9.9e-09  Score=66.17  Aligned_cols=85  Identities=16%  Similarity=0.186  Sum_probs=56.5

Q ss_pred             EEecCCCEEEEEeeeccC---CC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCe-EEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGKP---EP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG-VYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p---~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g-~y~C~~~~~~   76 (124)
                      .+..|+.+.|.|.+.+.|   .| .+.|++++..+....... ................|..++.+|.| .|.|.+.|..
T Consensus       239 ~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~  317 (329)
T 3oq3_B          239 NVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGV-YSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYY  317 (329)
T ss_dssp             EECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSE-EEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSS
T ss_pred             EEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCce-eeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecC
Confidence            456899999999999988   77 789999988643211000 00000111122334456788999999 9999999999


Q ss_pred             ccceeeeEEEEE
Q psy8666          77 GTAVSRNATLQV   88 (124)
Q Consensus        77 ~~~~~~~~~l~v   88 (124)
                      |.. ...+.|.|
T Consensus       318 G~~-~~~~~l~v  328 (329)
T 3oq3_B          318 FDK-TLTTTVVL  328 (329)
T ss_dssp             CEE-EEEEEEEE
T ss_pred             Cce-EEEEEEEe
Confidence            887 44555544

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.95  E-value=5.4e-09  Score=67.20  Aligned_cols=92  Identities=17%  Similarity=0.316  Sum_probs=56.0

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCEEee----ccCCCCCceEEEccCC----cEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVE----TSKSDAKSQRVILPTG----SLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~~~----~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|.+.+. |.|.+.|+|++....    ........+.......    .......|.+++.+|.|.|.|.+
T Consensus        14 ~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   93 (327)
T 2wng_A           14 SVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVK   93 (327)
T ss_dssp             EEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEE
T ss_pred             EEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEe
Confidence            56789999999999887 889999999874311    1000000111111000    11112345777999999999999


Q ss_pred             EeCCccc----eeeeEEEEEEeeee
Q psy8666          73 RNSVGTA----VSRNATLQVAVVIF   93 (124)
Q Consensus        73 ~~~~~~~----~~~~~~l~v~~~~~   93 (124)
                      .|..+..    .+..+.|.|..+|.
T Consensus        94 ~n~~~~~~~~~~~~~~~l~V~~~p~  118 (327)
T 2wng_A           94 FRKGSPDTEFKSGAGTELSVRAKPS  118 (327)
T ss_dssp             EESSTTCEEEEECCCEEEEEEBCCC
T ss_pred             ecCCCcceeEeecCcEEEEEEecCC
Confidence            9976542    12346777766543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.95  E-value=9.5e-10  Score=73.98  Aligned_cols=84  Identities=21%  Similarity=0.392  Sum_probs=56.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.+.|.+.  |.|.+.|++++....... ...........+.+    .|..++.+|.|.|.|.+.|..|.. .
T Consensus       363 ~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~g~L----~i~~v~~~D~G~Y~C~a~N~~G~~-~  434 (452)
T 3zyi_A          363 NISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHA-SRHPRISVLNDGTL----NFSHVLLSDTGVYTCMVTNVAGNS-N  434 (452)
T ss_dssp             ECCTTSCCEECCBCC--TTSEEEEECTTSCEECSS-CCCSSCEECTTSCE----ECSSCCTTCCEEEEEEEECSSCEE-E
T ss_pred             cccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccC-CCCCCEEECCCCeE----EEeecCHHHCEEEEEEEEcCCCcE-E
Confidence            456899999999987  999999999544333211 01112233444554    456779999999999999999987 5


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|...+.
T Consensus       435 ~~~~l~v~~~~~  446 (452)
T 3zyi_A          435 ASAYLNVSTAGT  446 (452)
T ss_dssp             EEEEEEC-----
T ss_pred             EEEEEEEEcccc
Confidence            677787766543

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.95  E-value=4.6e-09  Score=67.98  Aligned_cols=78  Identities=21%  Similarity=0.309  Sum_probs=54.5

Q ss_pred             EecCCCEEEEEee-----eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC-
Q psy8666           3 VAKNEPVTLNCKA-----EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV-   76 (124)
Q Consensus         3 ~~~G~~~~l~C~~-----~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~-   76 (124)
                      +..|+.+.|.|..     .+.|.|.+.|+|++..+...      .........+    .|..++.+|.|.|.|.+.|.. 
T Consensus       132 ~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~------~~~~~~~~~L----~i~~v~~~d~G~Y~C~a~n~~~  201 (349)
T 4dep_C          132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF------NNVIPEGMNL----SFLIALISNNGNYTCVVTYPEN  201 (349)
T ss_dssp             ETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSC------SSEEEETTEE----EEESCCGGGCEEEEEEEEEEET
T ss_pred             eecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCc------cceeecCCEE----EEeeeeecCCcEEEEEEEEeeC
Confidence            4578899999974     67899999999999877531      1112222334    345569999999999999986 


Q ss_pred             ccc--eeeeEEEEEEe
Q psy8666          77 GTA--VSRNATLQVAV   90 (124)
Q Consensus        77 ~~~--~~~~~~l~v~~   90 (124)
                      +..  .+..+.|.|..
T Consensus       202 g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          202 GRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             TEEEEEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEEEEEc
Confidence            443  24566666655

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.95  E-value=7e-10  Score=66.29  Aligned_cols=59  Identities=20%  Similarity=0.469  Sum_probs=45.2

Q ss_pred             cCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           5 KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .|+.+.|.|.+   |.|.+.|+|+|..+....         .....+.+    ..++..|.|.|.|.+.|..|..
T Consensus       121 ~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~---------~~~~~L~i----~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          121 GDGSVLLTCGL---TDKTIKWLKDGSIISPLN---------ATKNTWNL----GNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SSCEEEEECSS---SCSCEEEEETTEECCCSS---------CCSSCCEE----EETTSCCEEEEEEEESSCEEEE
T ss_pred             CCCeEEEEeeC---CCCeEEEEECCEECcccC---------CCcceEEE----CCCCcCcCEEEEEEEEcCcCCc
Confidence            89999999988   889999999999876321         12334433    4448999999999999987654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.94  E-value=5.1e-09  Score=63.14  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=47.5

Q ss_pred             CCCEEEEEeeecc-CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeE
Q psy8666           6 NEPVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNA   84 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~   84 (124)
                      ++.+.|.|.+.+. |.+.+.|+|++..+...     ........+.. ....|..++.+|.|.|.|.+.|..+.. ...+
T Consensus        17 ~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~-----~~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~~~n~~~~~-~~~~   89 (212)
T 2r15_A           17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-----DRVKTGVTGEQ-IWLQINEPTPNDKGKYVMELFDGKTGH-QKTV   89 (212)
T ss_dssp             SSEEEEEEEBSSCCSSCEEEEEETTEECCCC-----SSEEEEEETTE-EEEEEESCCGGGCEEEEEEEECSSCEE-EEEE
T ss_pred             CceEEEEEEEeccCCCceEEEEECCEEccCC-----CeEEEEEeCCE-EEEEECCCCcccCEEEEEEEecCCcce-EEEE
Confidence            4445566666553 58899999999887642     12222222222 223456779999999999999987765 3444


Q ss_pred             EEE
Q psy8666          85 TLQ   87 (124)
Q Consensus        85 ~l~   87 (124)
                      .|.
T Consensus        90 ~l~   92 (212)
T 2r15_A           90 DLS   92 (212)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            444

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.94  E-value=1.3e-09  Score=66.85  Aligned_cols=81  Identities=20%  Similarity=0.213  Sum_probs=54.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC----c
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV----G   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~----~   77 (124)
                      .+.+|+.+.|.|...+.|.+.+.|+|+|..+...      .........    ..|..++.+|.|.|.|.+.+..    .
T Consensus       116 ~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~------~~~~~~~~~----L~I~~v~~~D~G~Y~C~a~n~~~~~~~  185 (218)
T 1uct_A          116 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ------HQSGEHPAN----FSLGPVDLNVSGIYRCYGWYNRSPYLW  185 (218)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS------EEECSSSEE----EECCSCCGGGCEEEEEEEECTTSTTEE
T ss_pred             ccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc------ccCCCccCE----EEEccCCcccCEEEEEEEEcCCCCCcC
Confidence            3568999999997666778899999999765421      111111222    2456779999999999999853    2


Q ss_pred             cceeeeEEEEEEeee
Q psy8666          78 TAVSRNATLQVAVVI   92 (124)
Q Consensus        78 ~~~~~~~~l~v~~~~   92 (124)
                      ...+..+.|.|...+
T Consensus       186 s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          186 SFPSNALELVVTDSI  200 (218)
T ss_dssp             CCCCCCEEEEEC---
T ss_pred             CCCCCcEEEEEecCC
Confidence            334667788887654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.94  E-value=7.6e-09  Score=64.04  Aligned_cols=87  Identities=18%  Similarity=0.356  Sum_probs=55.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe--CCEEeeccC-------CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK--DGELVETSK-------SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k--~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|.+.+.|.|.+.|+|  ++..+....       .....+........ .....|..++.+|.|.|.|.+
T Consensus       146 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a  224 (247)
T 2ghw_B          146 SLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGT-DFTLTISRLEPEDFAVYYCQQ  224 (247)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSS-EEEEEECSCCGGGCEEEEEEE
T ss_pred             EecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCC-eEEEEECcCCHHHCEEEEEEE
Confidence            35689999999999999989999999  554331100       00011111111222 223456788999999999999


Q ss_pred             EeCCccceeeeEEEEEE
Q psy8666          73 RNSVGTAVSRNATLQVA   89 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~   89 (124)
                      .+......+....|.|.
T Consensus       225 ~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          225 RSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             CSSSSCEECCCEEEEEC
T ss_pred             ccCCCceEcCCEEEEEC
Confidence            98655444556666664

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.94  E-value=3.5e-09  Score=58.10  Aligned_cols=74  Identities=23%  Similarity=0.440  Sum_probs=47.7

Q ss_pred             EecCCCEEEEEeeeccCCC-----eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           3 VAKNEPVTLNCKAEGKPEP-----TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p-----~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      +.+|++++|.|...+.+.+     .+.|+|+|..+..          ......+    .|..++..|.|.|.|.+.+..+
T Consensus        19 v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~----------~~~~~~l----~i~~v~~~dsG~Y~C~~~~~~~   84 (108)
T 4hwn_A           19 PQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS----------RGLSSEF----QIPTASEDHSGSYWCEAATEDN   84 (108)
T ss_dssp             CBTTCCEEEEEEC---------CCEEEEEETTEEEEE----------EESCCEE----EESSCCGGGCEEEEEEEECTTS
T ss_pred             CCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC----------CCcccEE----EeCccCcccCeEEEEEEEeCCC
Confidence            5679999999998765444     3899999987642          1112222    3566799999999999998754


Q ss_pred             c--ceeeeEEEEEEe
Q psy8666          78 T--AVSRNATLQVAV   90 (124)
Q Consensus        78 ~--~~~~~~~l~v~~   90 (124)
                      .  ..+..+.|.|..
T Consensus        85 ~~~~~S~~l~L~V~g   99 (108)
T 4hwn_A           85 QVWKQSPQLEIRVQG   99 (108)
T ss_dssp             SSEEECCCEEECCBC
T ss_pred             ceeccCCCEEEEEEe
Confidence            2  235566666544

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.94  E-value=1.6e-09  Score=70.12  Aligned_cols=87  Identities=20%  Similarity=0.247  Sum_probs=57.7

Q ss_pred             CEEecCCCEEEEEeeeccC-----------CCeEEEEeCCEEee--ccCC-CCCceEEEccCCcEEEEEEEcCCCccCCe
Q psy8666           1 MVVAKNEPVTLNCKAEGKP-----------EPTIEWYKDGELVE--TSKS-DAKSQRVILPTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p-----------~p~v~w~k~g~~~~--~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~d~g   66 (124)
                      +.+.+|+.+.|.|.+.+.|           .+.+.|+|++....  .... ...........+.+    .|..++..|.|
T Consensus        17 v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L----~i~~~~~~D~G   92 (349)
T 4dep_C           17 IQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL----WFRPTLLNDTG   92 (349)
T ss_dssp             CEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEE----EESSCCGGGCE
T ss_pred             EEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEE----EEccCChhhCE
Confidence            4578999999999998655           48999999874211  0000 00111222233433    35677999999


Q ss_pred             EEEEEeEeCCccceeeeEEEEEEeee
Q psy8666          67 VYWCLARNSVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        67 ~y~C~~~~~~~~~~~~~~~l~v~~~~   92 (124)
                      .|.|.+.|..+.. ...+.|.|..++
T Consensus        93 ~Y~C~a~n~~~~~-~~~~~l~V~~~~  117 (349)
T 4dep_C           93 NYTCMLRNTTYCS-KVAFPLEVVQKD  117 (349)
T ss_dssp             EEEEEEECSSCEE-EEEEEEEEECCC
T ss_pred             EEEEEEecCCceE-EEEEEEEEecCC
Confidence            9999999987766 456777777654

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.93  E-value=4.2e-08  Score=53.69  Aligned_cols=86  Identities=15%  Similarity=0.321  Sum_probs=50.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eeccC----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VETSK----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+++.|.|...+.+.+.+.|||+.  ..   +....    .....+........ .....|.+++.+|.|.|.|.+
T Consensus        14 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~-~~~L~I~~v~~~DsG~Y~C~~   92 (109)
T 2q20_A           14 SASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGT-DFTFTISSLQPEDIATYYCQQ   92 (109)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEEEEEEE
T ss_pred             EecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCC-EEEEEECCCChhhCEEEEEEE
Confidence            4678999999999988778889999853  21   11000    00011111111111 223456888999999999999


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      .+...........|.|
T Consensus        93 ~~~~~~~fg~gT~L~V  108 (109)
T 2q20_A           93 YDNLPYTFGQGTKLEI  108 (109)
T ss_dssp             CSSSSCCBCCCEEEEE
T ss_pred             eeCCcceECCCEEEEE
Confidence            8753222233444443

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.93  E-value=1.5e-08  Score=55.41  Aligned_cols=74  Identities=19%  Similarity=0.297  Sum_probs=46.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--E---Eeecc--CC--CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--E---LVETS--KS--DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~---~~~~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+++.|.|...+.+.+.+.|||..  .   .+...  ..  ....+........ .....|.+++.+|.|.|.|.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~DsG~Y~C~~   90 (108)
T 1qfw_M           12 SMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSAT-DFTLTISSVQAEDFADYHCGQ   90 (108)
T ss_dssp             ECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSS-EEEEEESSCCTTCCSEEEEEE
T ss_pred             EEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCC-EEEEEECCCChhhCEEEEEEE
Confidence            4678999999999988777889999853  1   11100  00  0011222222222 234457888999999999999


Q ss_pred             EeCC
Q psy8666          73 RNSV   76 (124)
Q Consensus        73 ~~~~   76 (124)
                      .+..
T Consensus        91 ~~~~   94 (108)
T 1qfw_M           91 TYNH   94 (108)
T ss_dssp             CSSS
T ss_pred             ccCC
Confidence            8753

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.93  E-value=3.1e-08  Score=54.47  Aligned_cols=72  Identities=21%  Similarity=0.362  Sum_probs=45.2

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeC--CEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKD--GELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~--g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+.+|+++.|.|...+.  +.+.+.|||+  +....... ....+... ...........|.+++.+|.|.|.|.+.+
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A           11 TKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTI-SIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             EECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEEC-CSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEee-EeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence            56789999999998765  5678999985  32111000 00111111 11112233455788899999999999988

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.93  E-value=1.5e-09  Score=74.78  Aligned_cols=87  Identities=31%  Similarity=0.466  Sum_probs=60.2

Q ss_pred             EEecCCCEEEEEee-eccCCCeEEEEeCCEEeeccC--C-----CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666           2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSK--S-----DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR   73 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~   73 (124)
                      .+..|+++.|.|.+ .+.|.+.+.|+|++..+....  .     ....+.....++++    .|.+++.+|.|.|.|.+.
T Consensus       377 ~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L----~i~~v~~~D~G~Y~C~~~  452 (581)
T 3o3u_N          377 TARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSL----FLPAVGIQDEGIFRCQAM  452 (581)
T ss_dssp             EEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCE----EESSCCGGGCEEEEEEEE
T ss_pred             ceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceE----EEeccccccCeEEEEEEE
Confidence            46789999999998 788999999999765221100  0     00122233344444    456779999999999999


Q ss_pred             eCCccceeeeEEEEEEeee
Q psy8666          74 NSVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        74 ~~~~~~~~~~~~l~v~~~~   92 (124)
                      |..+......+.|.|..+|
T Consensus       453 n~~~~~~~~~~~l~V~~~~  471 (581)
T 3o3u_N          453 NRNGKETKSNYRVRVYQIP  471 (581)
T ss_dssp             CTTSCEEEEEEEEEEEBCC
T ss_pred             cCCCceeEEEEEEEEEcCC
Confidence            9888764567888887644

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.92  E-value=1.2e-08  Score=56.67  Aligned_cols=88  Identities=27%  Similarity=0.296  Sum_probs=52.5

Q ss_pred             EEecCCCEEEEEeeeccCC----CeEEEEeCC-------EEeecc--C-------CCCCceEEEccC--CcEEEEEEEcC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE----PTIEWYKDG-------ELVETS--K-------SDAKSQRVILPT--GSLFFLRVVHG   59 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~----p~v~w~k~g-------~~~~~~--~-------~~~~~~~~~~~~--~~~~~~~~i~~   59 (124)
                      .+..|+.+.|.|...+.+.    +.+.|++++       ..+...  .       .....+......  ........|.+
T Consensus        16 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   95 (126)
T 1eaj_A           16 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTN   95 (126)
T ss_dssp             EEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECS
T ss_pred             EEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEECc
Confidence            4678999999999876554    348999864       222110  0       001112222221  00001134677


Q ss_pred             CCccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        60 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      ++.+|.|.|.|.+.+..+.. ...+.|.|..
T Consensus        96 v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~~  125 (126)
T 1eaj_A           96 LQLSDIGTYQCKVKKAPGVA-NKKIHLVVLV  125 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             CChHHCeEEEEEEEcCCccC-CcEEEEEEEc
Confidence            79999999999999987755 4566776653

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.92  E-value=1.4e-08  Score=60.88  Aligned_cols=85  Identities=16%  Similarity=0.120  Sum_probs=56.5

Q ss_pred             EEecCCCEEEEEeeec-cCCCeEEEEeCCEEeecc--CCCC-------C----ceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETS--KSDA-------K----SQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~--~~~~-------~----~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+..|+.+.|.|.+.+ .+.+.+.|++++..+...  ....       .    .+.....++.+    .|.+++.+|.|.
T Consensus         9 ~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL----~I~~v~~~D~G~   84 (193)
T 2if7_A            9 NGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL----QLSNLKMEDTGS   84 (193)
T ss_dssp             EEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCE----EECSCCGGGCEE
T ss_pred             EEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEE----EECCCCcccCce
Confidence            5678999999999865 456789999998654311  0000       0    11122233444    356679999999


Q ss_pred             EEEEeEeCCccceeeeEEEEEEee
Q psy8666          68 YWCLARNSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v~~~   91 (124)
                      |.|.+.+..+.. ...+.|.|..+
T Consensus        85 Y~C~~~~~~~~~-~~~~~L~V~~~  107 (193)
T 2if7_A           85 YRAQISTKTSAK-LSSYTLRILRQ  107 (193)
T ss_dssp             EEEEEECSSCEE-EEEEEEEEECC
T ss_pred             EEEEEEecCCCe-EEEEEEEEEcc
Confidence            999999988765 34677777654

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.92  E-value=5.5e-08  Score=53.50  Aligned_cols=75  Identities=13%  Similarity=0.293  Sum_probs=46.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EEe--eccCC---CCCceEEEccC--CcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--ELV--ETSKS---DAKSQRVILPT--GSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~~--~~~~~---~~~~~~~~~~~--~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|...+.+ +.+.|||+.  ..+  .....   ....+......  ........|.+++.+|.|.|.|.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   90 (113)
T 1h5b_A           12 SLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAA   90 (113)
T ss_dssp             EEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCEEEEEEE
Confidence            467899999999987654 689999853  211  10000   00011111111  222334567888999999999999


Q ss_pred             EeCCc
Q psy8666          73 RNSVG   77 (124)
Q Consensus        73 ~~~~~   77 (124)
                      .|..+
T Consensus        91 ~n~~~   95 (113)
T 1h5b_A           91 EASSG   95 (113)
T ss_dssp             ECSSS
T ss_pred             ecCCC
Confidence            98754

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.92  E-value=8.6e-09  Score=61.51  Aligned_cols=72  Identities=21%  Similarity=0.295  Sum_probs=51.3

Q ss_pred             EEecCCCEEEEEe-eeccCC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCK-AEGKPE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~-~~~~p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+.+|+.+.|.|. ..+.|. +.+.|++++..+....  ..........+.+    .|.+++..|.|.|.|.+.+..+..
T Consensus        19 ~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~L----~i~~v~~~d~G~Y~C~~~~~~~~~   92 (201)
T 3s97_C           19 RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITM--DKRRFVSQTNGNL----YIANVEASDKGNYSCFVSSPSITK   92 (201)
T ss_dssp             EEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCC--SSSEEECTTTCCE----EESSCCGGGCEEEEEEEEEGGGTE
T ss_pred             EEECCCCEEEeccccccCCCceEEEEEECCceeeeee--CCCeEEEcCCCeE----EECcCCcccCeEEEEEEEecCCCc
Confidence            4778999999999 888888 9999999987654210  1112222234444    356669999999999999976544

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.91  E-value=4.2e-09  Score=63.99  Aligned_cols=78  Identities=12%  Similarity=0.129  Sum_probs=49.3

Q ss_pred             EEecC--CCEEEEEeeeccCCCeEEEEeC---CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKN--EPVTLNCKAEGKPEPTIEWYKD---GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G--~~~~l~C~~~~~p~p~v~w~k~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+.+|  +.+.|.|.+.+ |.+.+.|+++   +..+...     ..........+    .|..++.+|.|.|.|.+.|..
T Consensus        18 ~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~-----~~~~~~~~~~l----~I~~v~~~D~G~Y~C~a~n~~   87 (213)
T 2x1w_L           18 YITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDG-----NRISWDSKKGF----TIPSYMISYAGMVFCEAKIND   87 (213)
T ss_dssp             EECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCS-----SSCEEETTTEE----EEEGGGTTTCSEEEEEEC---
T ss_pred             EEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCC-----CcccccCCccE----EEccCChhcCceEEEEEEECC
Confidence            46779  99999999876 7789999884   5544321     11222233334    355669999999999999854


Q ss_pred             ccceeeeEEEEEE
Q psy8666          77 GTAVSRNATLQVA   89 (124)
Q Consensus        77 ~~~~~~~~~l~v~   89 (124)
                      +...+..+.|.|.
T Consensus        88 ~~~~s~~~~l~v~  100 (213)
T 2x1w_L           88 ESYQSIMYIVVVV  100 (213)
T ss_dssp             -CEECCCEEEEEC
T ss_pred             eeEEEEEEEEEEe
Confidence            4443434566663

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.91  E-value=1.7e-09  Score=70.39  Aligned_cols=84  Identities=18%  Similarity=0.181  Sum_probs=60.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCe-EEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG-VYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g-~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.+.|.+.+.|.|.+.|++++..+.....    .   . .........|..++..|.| .|.|.+.|..|.. 
T Consensus       169 ~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~----~---~-~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~-  239 (347)
T 2ifg_A          169 SVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM----K---S-GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA-  239 (347)
T ss_dssp             CCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC----C---C-CCSSEEEEEEESCCSTTTTCCEEECCEETTEEC-
T ss_pred             EEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc----c---c-eecccceEEEeeCChHHCCCeEEEEEEcCCCCE-
Confidence            356899999999999999999999998865432100    0   0 1111112345667999999 9999999998877 


Q ss_pred             eeeEEEEEEeeeee
Q psy8666          81 SRNATLQVAVVIFF   94 (124)
Q Consensus        81 ~~~~~l~v~~~~~~   94 (124)
                      +..+.|.|..+|.+
T Consensus       240 ~~~~~l~V~~~P~i  253 (347)
T 2ifg_A          240 EVSVQVNVSFPASV  253 (347)
T ss_dssp             CEEECCCCBEEEEE
T ss_pred             EEEEEEEEcCCCee
Confidence            56777777777764

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.91  E-value=7.6e-10  Score=71.20  Aligned_cols=82  Identities=28%  Similarity=0.485  Sum_probs=58.2

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+|++..+....... ..........+    .|..++..|.|.|.|.+.|..|.. ..
T Consensus       135 v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~L----~i~~v~~~d~G~Y~C~a~n~~g~~-~~  208 (334)
T 1ry7_B          135 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG-GIKLRHQQWSL----VMESVVPSDRGNYTCVVENKFGSI-RQ  208 (334)
T ss_dssp             EETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTT-CCCCCTTTTEE----EECSCCGGGCCCEEEEEEETTEEE-EE
T ss_pred             ecCCCcEEEEEEccCCCCCeEEEEECCEECccccccc-ceecccceEEE----EECCCCcccCEEEEEEEEeCCCCE-EE
Confidence            5579999999999999999999999998765321100 00001112223    356669999999999999998876 55


Q ss_pred             eEEEEEEe
Q psy8666          83 NATLQVAV   90 (124)
Q Consensus        83 ~~~l~v~~   90 (124)
                      .+.|.|..
T Consensus       209 ~~~l~V~~  216 (334)
T 1ry7_B          209 TYTLDVLE  216 (334)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            77777765

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.91  E-value=9.1e-09  Score=66.15  Aligned_cols=81  Identities=17%  Similarity=0.269  Sum_probs=48.5

Q ss_pred             ecCCCEEEEEeeeccC-CC-eEEEEeCCEEeeccCCCCCceEEEccCCcEE--EEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           4 AKNEPVTLNCKAEGKP-EP-TIEWYKDGELVETSKSDAKSQRVILPTGSLF--FLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p-~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+|+.+.|.|.+.+.+ .+ .+.|+|+|..+.....   .......++...  ....|..+..+|.|.|.|.+.|..+..
T Consensus       233 ~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~---~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          233 RAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETA---STVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             SSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEEC---CSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             CCCCcEEEEEEEccccCCCcEEEEEECCeEccCccc---CceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            4799999999999854 44 7999999998764210   111222333322  223445557789999999999998876


Q ss_pred             eeeeEEEE
Q psy8666          80 VSRNATLQ   87 (124)
Q Consensus        80 ~~~~~~l~   87 (124)
                      .+..+.+.
T Consensus       310 ~s~~~~~~  317 (327)
T 2wng_A          310 VSKSHDLK  317 (327)
T ss_dssp             EEEEEECC
T ss_pred             chhheEEE
Confidence            55444443

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.90  E-value=3e-08  Score=61.35  Aligned_cols=90  Identities=20%  Similarity=0.268  Sum_probs=54.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|+.  ..   +... .   .....+......... ....|.+++.+|.|.|.|.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~   90 (242)
T 2znx_A           12 SVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTD-FTLSINSVETEDFGMYFCQQ   90 (242)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             EEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCE-EEEEECCCChHHCEEEEEeE
Confidence            5678999999999998888999999853  11   1100 0   000111111111111 23456788999999999999


Q ss_pred             EeCCccceeeeEEEEEEeee
Q psy8666          73 RNSVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~~~   92 (124)
                      .|..+...+....|.|..++
T Consensus        91 ~n~~~~~~~~~~~L~V~~~~  110 (242)
T 2znx_A           91 SNSXPYTFGGGTKLEITGGG  110 (242)
T ss_dssp             CSSSSCEECCCEEEEEC---
T ss_pred             ecCCceEECCCEEEEEcCCC
Confidence            98755433345567766543

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.90  E-value=1.9e-08  Score=56.10  Aligned_cols=88  Identities=18%  Similarity=0.293  Sum_probs=52.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+++.|.|...+.+.+.+.|||+.  ..   +... .   .....+........ .....|.+++.+|.|.|.|.+
T Consensus        14 ~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~-~~~L~I~~v~~~DsG~Y~C~~   92 (119)
T 2e27_L           14 SASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGR-DYSFSISNLEPEDAATYYCLQ   92 (119)
T ss_dssp             EEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT-EEEEEECSCCGGGCEEEEEEE
T ss_pred             EEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCC-EEEEEECCCChHHCEEEEEEE
Confidence            5778999999999988788899999853  11   1100 0   00011221111111 223456888999999999999


Q ss_pred             EeCCccceeeeEEEEEEe
Q psy8666          73 RNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~   90 (124)
                      .+...........|.|..
T Consensus        93 ~~~~~~~fg~GT~l~v~~  110 (119)
T 2e27_L           93 YDNFTWTFGGGTKLEIKR  110 (119)
T ss_dssp             CGGGCCEECCCEEEEEEC
T ss_pred             ccCCceEECCCEEEEEeC
Confidence            875333333445555543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.90  E-value=4.4e-09  Score=65.67  Aligned_cols=84  Identities=21%  Similarity=0.339  Sum_probs=53.6

Q ss_pred             EEecCCCEEEEEee---eccCCCeEEEEeC-CEEeec----------------cCCCCCceEEE-----ccCCcEEEEEE
Q psy8666           2 VVAKNEPVTLNCKA---EGKPEPTIEWYKD-GELVET----------------SKSDAKSQRVI-----LPTGSLFFLRV   56 (124)
Q Consensus         2 ~~~~G~~~~l~C~~---~~~p~p~v~w~k~-g~~~~~----------------~~~~~~~~~~~-----~~~~~~~~~~~   56 (124)
                      .+..|+.+.|.|.+   .+.|.|.+.|+++ +.....                ...........     .....+    .
T Consensus       129 ~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L----~  204 (268)
T 3mj6_A          129 RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSI----K  204 (268)
T ss_dssp             EEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCE----E
T ss_pred             ccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEE----E
Confidence            46789999999999   5668999999983 321100                00000001111     112233    4


Q ss_pred             EcCCCccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          57 VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        57 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      |..++.+|.|.|.|.+.|..+.. ...+.|.|..
T Consensus       205 i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~  237 (268)
T 3mj6_A          205 LQTVKESDQGIYTCSIYVGKLES-RKTIVLHVVQ  237 (268)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             ECcCChhhCeEEEEEEEcCCceE-EEEEEEEEEc
Confidence            56779999999999999988876 5677777743

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.89  E-value=5.4e-09  Score=62.40  Aligned_cols=77  Identities=17%  Similarity=0.205  Sum_probs=50.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC--ccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV--GTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~--~~~   79 (124)
                      .+.+|+.+.|.|.+.+ +.+.+.|+|+|..+...      .........+    .|..++.+|.|.|.|.+.|..  ...
T Consensus       109 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~------~~~~~~~~~L----~I~~v~~~d~G~Y~C~a~n~~~~~s~  177 (188)
T 1oll_A          109 EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ------RGYGKVQAEF----PLGPVTTAHRGTYRCFGSYNNHAWSF  177 (188)
T ss_dssp             EEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE------EEECSSEEEE----EEEECCGGGCEEEEEECEEETTEECC
T ss_pred             ccccCCEEEEEEEcCC-CCCEEEEEECCcccccc------ccCCCceeEE----EECCCCcCCCcEEEEEEEcCCCcCCC
Confidence            3578999999999865 45789999998755420      0011111223    345559999999999999864  233


Q ss_pred             eeeeEEEEEE
Q psy8666          80 VSRNATLQVA   89 (124)
Q Consensus        80 ~~~~~~l~v~   89 (124)
                      .+..+.|.|.
T Consensus       178 ~S~~~~l~V~  187 (188)
T 1oll_A          178 PSEPVKLLVT  187 (188)
T ss_dssp             CCCCEEEEEE
T ss_pred             CCCcEEEEec
Confidence            4566666653

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.89  E-value=1.4e-08  Score=55.42  Aligned_cols=74  Identities=26%  Similarity=0.449  Sum_probs=46.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+++.|.|...+.+.+.+.|||+.  ..   +... .   .....+........ .....|.+++.+|.|.|.|.+
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~DsG~Y~C~~   90 (107)
T 1i8k_A           12 SVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGT-DFVFTIENTLSEDVGDYYCLQ   90 (107)
T ss_dssp             ECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT-EEEEEESSCCGGGCEEEEEEE
T ss_pred             EecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCC-EEEEEECCCCHHHCEEEEEEE
Confidence            4678999999999988778889999853  21   1100 0   00011221211111 223457888999999999998


Q ss_pred             EeCC
Q psy8666          73 RNSV   76 (124)
Q Consensus        73 ~~~~   76 (124)
                      .+..
T Consensus        91 ~~~~   94 (107)
T 1i8k_A           91 SFNV   94 (107)
T ss_dssp             CSSS
T ss_pred             eeCC
Confidence            8753

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.89  E-value=1.9e-08  Score=61.88  Aligned_cols=89  Identities=15%  Similarity=0.216  Sum_probs=55.3

Q ss_pred             EEecCCCEEEEEeeeccC----CCeEEEEeCC--EEe---eccC----CCCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP----EPTIEWYKDG--ELV---ETSK----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p----~p~v~w~k~g--~~~---~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|+.+.|.|.+.+.|    .+.+.|+|+.  ..+   ....    .....+......... ....|.+++.+|.|.|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y   90 (240)
T 1moe_A           12 AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTD-FTLIIDPVEADDVATY   90 (240)
T ss_dssp             EECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEEE
T ss_pred             EecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCe-EEEEEcCCChhhCEEE
Confidence            467899999999998887    7889999852  211   1000    000111111111111 2345688899999999


Q ss_pred             EEEeEeCCccceeeeEEEEEEee
Q psy8666          69 WCLARNSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l~v~~~   91 (124)
                      .|.+.|..+...+....|.|...
T Consensus        91 ~C~~~n~~~~~~~~~~~l~V~~~  113 (240)
T 1moe_A           91 YCQQTNEDPYTFGGGTKLEIKGG  113 (240)
T ss_dssp             EEEECSSSSCCBCCCEEEEECCC
T ss_pred             EEEEccCCceeecCCEEEEEecC
Confidence            99999986553344566777653

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.89  E-value=2.7e-08  Score=68.49  Aligned_cols=94  Identities=14%  Similarity=0.139  Sum_probs=60.7

Q ss_pred             EEecCCCEEEEEeeeccCCC---eEEEEeCCEEe-----eccC-C---CCCceEEEccC-CcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP---TIEWYKDGELV-----ETSK-S---DAKSQRVILPT-GSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p---~v~w~k~g~~~-----~~~~-~---~~~~~~~~~~~-~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+..|+.+.|.|.+.+.|.+   .+.|+|++..+     .... .   ....+...... ........|.+++..|.|.|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y   90 (585)
T 2ocw_A           11 NSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRY   90 (585)
T ss_pred             EEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEEE
Confidence            57789999999999887654   78999987532     1100 0   00011111110 11112334677799999999


Q ss_pred             EEEeEeCCccceeeeEEEEEEeeeeeee
Q psy8666          69 WCLARNSVGTAVSRNATLQVAVVIFFIS   96 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~   96 (124)
                      .|.+.|..+.. +..+.|.|..+|.+..
T Consensus        91 ~C~~~n~~~~~-~~~~~l~V~~~p~~~~  117 (585)
T 2ocw_A           91 KCGLGINSRGL-SFDVSLEVSQGPGLLN  117 (585)
T ss_pred             EEEcccCCCCc-eEEEEEEEecCccccC
Confidence            99999987766 5678888888776543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.89  E-value=1.9e-08  Score=62.70  Aligned_cols=90  Identities=16%  Similarity=0.265  Sum_probs=56.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--ccC-----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--TSK-----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|+  +..+.  ...     .....+......... ....|.+++.+|.|.|.|.+
T Consensus       149 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~  227 (256)
T 3umt_A          149 SASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSD-YSLTISSLESEDFVDYYCLQ  227 (256)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTE-EEEEECSCCGGGCSEEEEEE
T ss_pred             EEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCE-EEEEECCCChhHCEEEEEEE
Confidence            466899999999999988889999984  22211  000     000011111111221 23456788999999999999


Q ss_pred             EeCCccceeeeEEEEEEeee
Q psy8666          73 RNSVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~~~   92 (124)
                      .+.........+.|.|...+
T Consensus       228 ~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          228 YASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             CSSSSCEECCCEEEEEC---
T ss_pred             eeCCCcEECCCEEEEEECCC
Confidence            98766555667888887654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.89  E-value=1.2e-09  Score=65.23  Aligned_cols=68  Identities=22%  Similarity=0.412  Sum_probs=49.0

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcC-CCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG-KKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      ...|+.+.|.|.+.+ +. .+.|+|+|..+...           .+..+    .|.. ++..|.|.|.|.+.|..|.. +
T Consensus        11 ~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-----------~~~~L----~I~~~~~~~D~G~Y~C~a~n~~g~~-~   72 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-----------HDKHL----VLQDFSEVEDSGYYVCYTPASNKNT-Y   72 (186)
T ss_dssp             EEETTEEEEECSSCC-CT-TCEEEETTEEECSC-----------CCSEE----EEESCCTTTSCEEEEEECSSCCCCC-C
T ss_pred             EeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-----------CCCEE----EECCCCccccCEEEEEEEEeCCCcE-E
Confidence            357999999999887 43 49999999887631           12233    3455 68999999999999988774 3


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.+.|
T Consensus        73 ~~~~~~v   79 (186)
T 1jbj_A           73 LYLKARV   79 (186)
T ss_dssp             EEECCCC
T ss_pred             EEEEEEE
Confidence            3444433

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.88  E-value=2.5e-08  Score=61.76  Aligned_cols=88  Identities=18%  Similarity=0.342  Sum_probs=54.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--E---Eeecc----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--E---LVETS----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~---~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|+.  .   .+...    ......+......... ....|.+++.+|.|.|.|.+
T Consensus        15 ~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~   93 (250)
T 3esu_F           15 SASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTD-YSLTISNLEQEDIGTYFCQQ   93 (250)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             EeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCE-EEEEEccCChhhCEEEEEEE
Confidence            4678999999999999999999999843  1   11100    0000111111111111 23456888999999999999


Q ss_pred             EeCCccceeeeEEEEEEe
Q psy8666          73 RNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~   90 (124)
                      .|..+........|.|..
T Consensus        94 ~n~~~~~~~~~~~l~V~~  111 (250)
T 3esu_F           94 GNTLPWTFGGGTKLEIRR  111 (250)
T ss_dssp             CSSSSCEECCCEEEEEC-
T ss_pred             eeCCCceECCCEEEEEEC
Confidence            987665434455666654

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.88  E-value=3.1e-08  Score=55.28  Aligned_cols=88  Identities=18%  Similarity=0.306  Sum_probs=53.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+++.|.|.+.+.+.+.+.|||+.  ..   +... .   .....+........ .....|.+++.+|.|.|.|.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~-~~~L~I~~v~~~DsG~Y~C~~   90 (120)
T 1mqk_L           12 SASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGT-QFSLKINSLLPEDFGSYYCQH   90 (120)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEEEEEEE
T ss_pred             EEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCC-EEEEEECCCCHHHCEEEEEEE
Confidence            5678999999999988778899999843  21   1100 0   00011111111111 223457888999999999999


Q ss_pred             EeCC-ccceeeeEEEEEEe
Q psy8666          73 RNSV-GTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~~-~~~~~~~~~l~v~~   90 (124)
                      .+.. .........|.|..
T Consensus        91 ~~~~~~~~fg~gt~L~V~~  109 (120)
T 1mqk_L           91 HYGTPPLTFGGGTKLEIKR  109 (120)
T ss_dssp             CSSSSSCCBCCCEEEEEC-
T ss_pred             EeCCCceEECCCeEEEEec
Confidence            8854 22334566777654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.88  E-value=2.5e-09  Score=68.15  Aligned_cols=78  Identities=22%  Similarity=0.365  Sum_probs=54.5

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+. |.+.+.|+|++..+....     ..... .+.  ....|..++..|.|.|.|.+.|..+.. 
T Consensus        17 ~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~-----~~~~~-~~~--~~L~i~~~~~~d~G~Y~C~~~n~~g~~-   87 (317)
T 2y25_A           17 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-----KHDFK-DGI--CTLLITEFSKKDAGIYEVILKDDRGKD-   87 (317)
T ss_dssp             EEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSC-----C------CC--EEEEETTCCSTTCSCEEEEEESSSCEE-
T ss_pred             EECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCC-----cEEEE-CCe--EEEEEccCCcccCeEEEEEEECCCCcE-
Confidence            46789999999999887 778999999998876321     11111 111  223467779999999999999988765 


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      ...+.|.+
T Consensus        88 ~~~~~l~v   95 (317)
T 2y25_A           88 KSRLKLVD   95 (317)
T ss_dssp             EEEECCST
T ss_pred             EEEEEEEE
Confidence            33444433

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.88  E-value=4.8e-08  Score=62.66  Aligned_cols=86  Identities=17%  Similarity=0.227  Sum_probs=58.2

Q ss_pred             EecC---CCEEEEEe-eeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEE--EEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           3 VAKN---EPVTLNCK-AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLF--FLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G---~~~~l~C~-~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +..|   +.+.|.|. ..+.|.|.+.|++++.....      ........+.+.  ....+..++..|.|.|.|.+.|..
T Consensus       144 ~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  217 (331)
T 3u83_A          144 AKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAE------YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHM  217 (331)
T ss_dssp             ECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEE------EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETT
T ss_pred             ecCCCccceEEEEEEecCCcCCceEEEEcCCCCccc------cceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCC
Confidence            4456   66999998 78889999999996332221      011122223322  223455668899999999999998


Q ss_pred             ccceeeeEEEEEEeeeeee
Q psy8666          77 GTAVSRNATLQVAVVIFFI   95 (124)
Q Consensus        77 ~~~~~~~~~l~v~~~~~~~   95 (124)
                      +.. +..+.|.|..+|.+.
T Consensus       218 ~~~-~~~~~l~V~~~P~~~  235 (331)
T 3u83_A          218 DRF-KESLTLNVQYEPEVT  235 (331)
T ss_dssp             EEE-EEEEECCEEEEEEEE
T ss_pred             Ccc-eeeEEEEEecCCeEE
Confidence            776 667888888777655

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.88  E-value=3.6e-08  Score=59.82  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=55.2

Q ss_pred             EEecCCCEEEEEeeeccCC-----CeEEEEeCCEEeeccCCC----------CCceEEEccC--CcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE-----PTIEWYKDGELVETSKSD----------AKSQRVILPT--GSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~-----p~v~w~k~g~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.|.     +.+.|+|++..+......          ...+......  ........|.+++.+|
T Consensus        12 ~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D   91 (222)
T 3sbw_C           12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQD   91 (222)
T ss_dssp             EEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGG
T ss_pred             EEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCccccc
Confidence            4678999999999876663     479999986433211000          0011111111  0011234568889999


Q ss_pred             CeEEEEEeEeCCccceeeeEEEEEEeeee
Q psy8666          65 GGVYWCLARNSVGTAVSRNATLQVAVVIF   93 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~~~~~~~l~v~~~~~   93 (124)
                      .|.|.|.+.+ .+.. ...+.|.|..++.
T Consensus        92 ~G~Y~C~~~~-~~~~-~~~~~l~V~~~~~  118 (222)
T 3sbw_C           92 AGVYRCMISY-GGAD-YKRITVKVNAPYN  118 (222)
T ss_dssp             CEEEEEEEES-SSEE-EEEEEEEEEBCCC
T ss_pred             CeEEEEEEEe-CCCc-eeEEEEEEECCCC
Confidence            9999999998 4444 5567787776553

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.87  E-value=1.8e-08  Score=70.20  Aligned_cols=80  Identities=20%  Similarity=0.343  Sum_probs=58.3

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+.+.|.|.+.+ |.+.+.|+++|..+...     ...... ....+.    |..++..|.|.|.|.+.|..+...+
T Consensus       123 v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~L~----i~~~~~~d~G~Y~C~a~n~~~~~~s  192 (642)
T 1e07_A          123 VEDKDAVAFTCEPET-QDATYLWWVNNQSLPVS-----PRLQLSNGNRTLT----LFNVTRNDTASYKCETQNPVSARRS  192 (642)
T ss_pred             EecCCcEEEEEECCC-CCeeEEEEECCeECCCC-----CceEEcCCCCEEE----EeCCCcccCeeEEEEEecCCCCccc
Confidence            457889999999988 88999999999877532     122222 223333    4555899999999999998877556


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|...|
T Consensus       193 ~~~~l~V~~~p  203 (642)
T 1e07_A          193 DSVILNVLYGP  203 (642)
T ss_pred             ceEEEEEEeCC
Confidence            67788887554

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.87  E-value=2.8e-08  Score=62.11  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=55.8

Q ss_pred             EEecCCCEEEEEeeec-cCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeE--EEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV--YWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~--y~C~~~~~~   76 (124)
                      .+.+|+.+.|.|.+.+ .|.|  .+.|+|++..+..       . .......+.+... ..++..|.|.  |.|.+.|..
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~-------~-~~~~~~~~~~~~~-~~~~~~d~g~g~Y~C~a~n~~   84 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-------T-VTYGNDSFSAKAS-VSVTAEDEGTQRLTCAVILGN   84 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC-------E-EEECSSEEEEEEE-EEECGGGCEEEEEEEEEEETT
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc-------e-EeeCCCeEEEEee-cccccccCCcceEEEEEecCC
Confidence            3678999999999988 7777  8999999987652       1 1122223322222 2336688885  999999998


Q ss_pred             ccceeeeEEEEEEee
Q psy8666          77 GTAVSRNATLQVAVV   91 (124)
Q Consensus        77 ~~~~~~~~~l~v~~~   91 (124)
                      +.. ...+.|.|...
T Consensus        85 ~~~-~~~~~l~V~~~   98 (265)
T 2oz4_A           85 QSQ-ETLQTVTIYSF   98 (265)
T ss_dssp             EEE-EEEEEEEEECC
T ss_pred             CCc-EEEEEEEEeCC
Confidence            876 56778888653

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.86  E-value=1.7e-07  Score=58.27  Aligned_cols=89  Identities=19%  Similarity=0.240  Sum_probs=53.2

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEeecc------------CCCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVETS------------KSDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~~~------------~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|.+.+.+  .+.+.|+|.  +..+...            ......+..... .........|.+++.+|
T Consensus        12 ~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   91 (253)
T 3uzq_A           12 LVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSGD   91 (253)
T ss_dssp             EECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCccc
Confidence            467899999999988744  778999982  2211100            000001111111 11112234568889999


Q ss_pred             CeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+..+........|.|..
T Consensus        92 sG~Y~C~~~~~~~~~~~~~~~l~V~~  117 (253)
T 3uzq_A           92 TAVYYCSRGWEGFAYWGQGTLVTVSA  117 (253)
T ss_dssp             CEEEEEEECSSSCCEECCCEEEEECS
T ss_pred             CEEEEEEEeeCCccEECCCcEEEEec
Confidence            99999999986655434456666653

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.86  E-value=8.4e-09  Score=65.16  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=55.0

Q ss_pred             EEecCCCEEEEEeeeccCC-CeEEEE-eCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCe-EEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE-PTIEWY-KDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG-VYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~-p~v~w~-k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g-~y~C~~~~~~~~   78 (124)
                      .+.+|+.+.|.|.+.+ |. |.+.|+ ++|..+...     ..........+    .|..++..|.| .|.|.+.|..+.
T Consensus       102 ~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~-----~~~~~~~~~~L----~i~~v~~~d~G~~Y~C~a~n~~~~  171 (290)
T 2o26_X          102 FGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD-----LTFVPNPKAGI----TIKNVKRAYHRLCVRCAAQRDGTW  171 (290)
T ss_dssp             EEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT-----CEEEEETTTEE----EEESCCGGGTTCEEEEEEEETTEE
T ss_pred             EEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC-----CceeeCCCCCE----EEecccHHHCCCEEEEEEEECCce
Confidence            3567999999999985 77 899995 677665421     22223333444    34566999999 999999998666


Q ss_pred             ceeeeEEEEEE
Q psy8666          79 AVSRNATLQVA   89 (124)
Q Consensus        79 ~~~~~~~l~v~   89 (124)
                      ..+..+.|.|.
T Consensus       172 ~~s~~~~l~V~  182 (290)
T 2o26_X          172 LHSDKFTLKVR  182 (290)
T ss_dssp             EECCCEEEEEE
T ss_pred             EEeEEEEEEEE
Confidence            54556777776

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.85  E-value=1e-08  Score=61.97  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=53.5

Q ss_pred             EEecCCCEEEEEeeeccCCCe---EEEEeCCEEeeccC-----------CCCCceEEEc----------cCCcEEEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT---IEWYKDGELVETSK-----------SDAKSQRVIL----------PTGSLFFLRVV   57 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~---v~w~k~g~~~~~~~-----------~~~~~~~~~~----------~~~~~~~~~~i   57 (124)
                      .+..|+.+.|.|.+.+.+.+.   +.|+|++.......           ..........          ....+    .|
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL----~I   87 (225)
T 4fmk_A           12 RGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATL----AF   87 (225)
T ss_dssp             EEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCE----EE
T ss_pred             EEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEE----EE
Confidence            467899999999998877664   78999764332100           0000000000          11223    45


Q ss_pred             cCCCccCCeEEEEEeEeCCccceeeeEEEEEEeeee
Q psy8666          58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIF   93 (124)
Q Consensus        58 ~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~~~   93 (124)
                      .+++.+|.|.|.|.+.+..+........+.+..++.
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~  123 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPE  123 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCc
Confidence            777999999999999997766544445555544443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.85  E-value=5e-08  Score=58.61  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             CEEecCCCEEEEEeeeccCCC---eEEEEeCCEEeeccC----CCC---------CceEEEccC--CcEEEEEEEcCCCc
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEP---TIEWYKDGELVETSK----SDA---------KSQRVILPT--GSLFFLRVVHGKKE   62 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p---~v~w~k~g~~~~~~~----~~~---------~~~~~~~~~--~~~~~~~~i~~~~~   62 (124)
                      |.+..|+.+.|.|.+.+.|.+   .+.|+|++.......    ...         ..+......  ........|.+++.
T Consensus         9 vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   88 (218)
T 4frw_A            9 VTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQ   88 (218)
T ss_dssp             EEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCG
T ss_pred             EEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccH
Confidence            357889999999999887765   389999764322100    000         000000000  00001124677799


Q ss_pred             cCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          63 QDGGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        63 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      +|.|.|.|.+.+..+........+.+..
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~  116 (218)
T 4frw_A           89 ADEGEYECRVSTFPAGSFQARLRLRVLV  116 (218)
T ss_dssp             GGCEEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             HHCCceeEEEEeccCceeeeEEEEEEee
Confidence            9999999999887665434344444443

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.85  E-value=6.7e-10  Score=57.99  Aligned_cols=56  Identities=23%  Similarity=0.502  Sum_probs=41.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCC-CccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK-KEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~d~g~y~C~~~~   74 (124)
                      .+..|+++.|.|.+.+.|.  ++|+|+|..+...           ..+.+    .|.++ +.+|.|.|.|.+..
T Consensus        10 v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~-----------~~~~L----~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           10 VSISGTSVELTCPLDSDEN--LKWEKNGQELPQK-----------HDKHL----VLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             EEEETTEEEEECSSCCCSS--CEEEETTEECTTC-----------CSSCC----BCCSCCTTTTCSCEEEECSS
T ss_pred             EEEcCCeEEEEEECCCCCc--EEEEECCEECcCC-----------CCCEE----EECccCccCcCEEEEEEEcc
Confidence            3567999999999998873  9999999877521           22233    24553 67999999999865

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.85  E-value=9.9e-08  Score=59.37  Aligned_cols=81  Identities=17%  Similarity=0.161  Sum_probs=52.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc-ce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT-AV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~-~~   80 (124)
                      .+..|++++|.|.+.+ +.+.+.|+|++..+.......      ...... ....|..++..|.|.|.|.+.+..+. ..
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~------~~~~~~-~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~   88 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP------PERINK-VKFYIPDMNSRMAGQYSCIYRVGELWSEP   88 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS------CTTCCE-EEEEECSCCGGGCEEEEEEEEETTEECCC
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccc------cCCcce-eEEEecCCCcccCeEEEEEEecCCccccC
Confidence            3678999999999864 456789999998764210000      001111 12346777999999999999886442 23


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus        89 S~~~~L~V~~   98 (242)
T 1p6f_A           89 SNLLDLVVTE   98 (242)
T ss_dssp             CCCEEEEEEC
T ss_pred             CcceEEEeec
Confidence            5567777764

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.85  E-value=2.4e-08  Score=62.97  Aligned_cols=89  Identities=17%  Similarity=0.306  Sum_probs=53.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCE-----Eeecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGE-----LVETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~-----~~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|++.     .+... .   .....+......... ....|.+++.+|.|.|.|.+
T Consensus        23 ~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~DsG~Y~C~~  101 (276)
T 3auv_A           23 SASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTD-FTLTISSLQPEDFATYYCQQ  101 (276)
T ss_dssp             ECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             EEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCe-EEEEEccCChhhCEEEEEEE
Confidence            46789999999999988889999998542     11100 0   000111111111211 23456788999999999999


Q ss_pred             EeCCccceeeeEEEEEEee
Q psy8666          73 RNSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~~   91 (124)
                      .|..+...+....|.|...
T Consensus       102 ~n~~~~~~~~~~~l~V~~~  120 (276)
T 3auv_A          102 HYTTPPTFGCGTKVEIKGG  120 (276)
T ss_dssp             CSSSSCCCCCCEEEEC---
T ss_pred             ecCCcccccCCEEEEEecC
Confidence            9976543334456666543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.85  E-value=3.6e-08  Score=59.59  Aligned_cols=86  Identities=16%  Similarity=0.293  Sum_probs=52.5

Q ss_pred             EEecCCCEEEEEeeeccC---CCeEEEEeCC--EEeecc-------CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP---EPTIEWYKDG--ELVETS-------KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p---~p~v~w~k~g--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+..|+.+.|.|.+.+.|   .+.+.|+|++  ..+...       ......+......... ....|.+++.+|.|.|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~   89 (212)
T 1q0x_L           11 TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDK-AALTITGAQTEDEAIYF   89 (212)
T ss_dssp             EECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEEEE
T ss_pred             eecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCE-EEEEECCCCccCCEEEE
Confidence            467899999999998877   4789999852  222100       0000111111111111 23456788999999999


Q ss_pred             EEeEeCCccceeeeEEEEE
Q psy8666          70 CLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        70 C~~~~~~~~~~~~~~~l~v   88 (124)
                      |.+.+..+........|.|
T Consensus        90 C~~~~~~~~~~~~~~~l~V  108 (212)
T 1q0x_L           90 CALWSNNKLVFGGGTKLTV  108 (212)
T ss_dssp             EEEECSSCEEECCCEEEEE
T ss_pred             EEEecCchhhcCCCeEEEE
Confidence            9999976643334556666

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.84  E-value=3.2e-08  Score=61.47  Aligned_cols=88  Identities=16%  Similarity=0.346  Sum_probs=53.0

Q ss_pred             EEecCCCEEEEEeeeccC-----CCeEEEEeC--CEEeec-------cCCCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-----EPTIEWYKD--GELVET-------SKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-----~p~v~w~k~--g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+..|+.+.|.|.+.+.|     .+.+.|+|+  +..+..       .......+......... ....|.+++..|.|.
T Consensus        49 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~  127 (254)
T 2c1o_A           49 SVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTD-FTLKISRVEAEDLGI  127 (254)
T ss_dssp             EECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCSE
T ss_pred             EecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCE-EEEEECcCCcccCEE
Confidence            467899999999998877     488999974  322110       00000111111111211 234567889999999


Q ss_pred             EEEEeEeCCccceeeeEEEEEEe
Q psy8666          68 YWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      |.|.+.|..+........+.|..
T Consensus       128 Y~C~a~n~~~~~~~~~~~l~V~~  150 (254)
T 2c1o_A          128 YYCVQGSHFPPTFGAGTKLELKR  150 (254)
T ss_dssp             EEEEECSSSSCEEBCCEEEEECC
T ss_pred             EEEEEEcCcceEecCCEEEEECC
Confidence            99999987654333344566643

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.84  E-value=4.2e-09  Score=62.68  Aligned_cols=64  Identities=22%  Similarity=0.322  Sum_probs=43.9

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      +..|+.+.|.|.+.+. .+.+.|+|+|..+...     .. .......+.+..+    +.+|.|.|.|.+.|..+
T Consensus       105 v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~-----~~-~~~~~~~L~i~~v----~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          105 VSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYK-----NP-ERWYRASFPIITV----TAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             SCCTTCEEEEEECSSC-CCEEEEEECCCCTTSC-----CC-CEEEEESSSEEEE----TTCCSEEEEEEEECTTS
T ss_pred             ecCCCcEEEEEEcCCC-CcEEEEEECCCcCcce-----ec-CCCceEEEEEccC----CccCCeEEEEEEEeCCC
Confidence            4579999999998664 4689999998765421     00 1112233333444    89999999999999753

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.84  E-value=6.4e-08  Score=59.79  Aligned_cols=87  Identities=20%  Similarity=0.289  Sum_probs=52.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC----------------CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD----------------GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+.+|+.+.|.|.+.+.+.+.+.|||.                +......  ....+..............|.+++.+|.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~L~I~~v~~~D~   89 (246)
T 4dzb_B           12 ISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQG--VEKDKFLINHASLTLSTLTVTSAHPEDS   89 (246)
T ss_dssp             EEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTT--CCGGGEEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCc--ccCCcEEEEecCCCEEEEEECCCCHHHC
Confidence            467899999999999889999999982                1111100  0001111111111122345688899999


Q ss_pred             eEEEEEeEeCCc---cceeeeEEEEEEe
Q psy8666          66 GVYWCLARNSVG---TAVSRNATLQVAV   90 (124)
Q Consensus        66 g~y~C~~~~~~~---~~~~~~~~l~v~~   90 (124)
                      |.|.|.+.+..+   ........|.|..
T Consensus        90 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  117 (246)
T 4dzb_B           90 SFYICSARTSGDFGEQFFGPGTRLTVLE  117 (246)
T ss_dssp             EEEEEEECCSSGGGCCEECCCEEEEEES
T ss_pred             EEEEEEEecCCCCcceEEcCCEEEEEec
Confidence            999999987543   1123345666653

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.84  E-value=2e-09  Score=69.46  Aligned_cols=84  Identities=21%  Similarity=0.354  Sum_probs=60.2

Q ss_pred             EEecCCCEEEEEeee-------ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAE-------GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-------~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+.+|+.+.|.|.+.       +.|.+.+.|+|++..+..... .... .....+.+    .|..++..|.|.|.|.+.|
T Consensus        29 ~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~-~~~~-~~~~~~~L----~i~~v~~~D~G~Y~C~~~n  102 (339)
T 3o4o_C           29 FRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE-EETR-MWAQDGAL----WLLPALQEDSGTYVCTTRN  102 (339)
T ss_dssp             EEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCC-SSSC-EEEETTEE----EESSBCTTCCEEEECCEEE
T ss_pred             EEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCcc-cccc-EEeeCCeE----EECCCCcccCEEEEEEEEC
Confidence            467899999999997       888999999999876432111 0112 22334444    3566699999999999999


Q ss_pred             CCccceeeeEEEEEEeee
Q psy8666          75 SVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        75 ~~~~~~~~~~~l~v~~~~   92 (124)
                      ..+.. ...+.|.|...+
T Consensus       103 ~~g~~-~~~~~l~V~~~~  119 (339)
T 3o4o_C          103 ASYCD-KMSIELRVFENT  119 (339)
T ss_dssp             TTEEE-EEEEEEEEECSC
T ss_pred             CcceE-EEEEEEEEEcCC
Confidence            88765 567777776654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.84  E-value=4.9e-09  Score=68.35  Aligned_cols=73  Identities=14%  Similarity=0.148  Sum_probs=53.7

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      +.+|+.+.|.|.+.+.|.|.+.|++++..+.            .....+    .|..++..|.|.|.|.+.|..+.. ..
T Consensus       108 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~------------~~~~~L----~i~~v~~~d~G~Y~C~a~~~~~~~-~~  170 (363)
T 1wio_A          108 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------------QGGKTL----SVSQLELQDSGTWTCTVLQNQKKV-EF  170 (363)
T ss_dssp             EESBSCEEEEEECCTTCCCCEEEECSSSCEE------------EESSEE----EECSBCGGGCEECEEEEEETTEEE-EE
T ss_pred             EecCCCEEEEEEcCCCCCCeEEEEcCCCccc------------ccceEE----EEeeCChhcCCEEEEEEecCCCeE-EE
Confidence            5689999999999889999999999875432            122333    345668999999999999976554 34


Q ss_pred             eEEEEEEeee
Q psy8666          83 NATLQVAVVI   92 (124)
Q Consensus        83 ~~~l~v~~~~   92 (124)
                      .+.+.|..+|
T Consensus       171 ~~~l~v~~~p  180 (363)
T 1wio_A          171 KIDIVVLAFQ  180 (363)
T ss_dssp             CCEECEECCS
T ss_pred             EEEEEEecCC
Confidence            5566665444

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.84  E-value=2.1e-08  Score=62.38  Aligned_cols=92  Identities=15%  Similarity=0.295  Sum_probs=57.5

Q ss_pred             EEecCCCEEEEEeeeccCCC----eEEEEeC--CEEee--ccCC-----CCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP----TIEWYKD--GELVE--TSKS-----DAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p----~v~w~k~--g~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|+++.|.|.+.+.+.+    .+.|+|+  +....  ....     ....+........ .....|.+++.+|.|.|
T Consensus       144 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~DsG~Y  222 (253)
T 3uzq_A          144 AVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRT-DFTLTINPVEADDVATY  222 (253)
T ss_dssp             EECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEEE
T ss_pred             EEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCC-EEEEEECCCCHHHCEEE
Confidence            46689999999999888776    8999984  22211  0000     0001111111111 22345688899999999


Q ss_pred             EEEeEeCCccceeeeEEEEEEeeeee
Q psy8666          69 WCLARNSVGTAVSRNATLQVAVVIFF   94 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l~v~~~~~~   94 (124)
                      .|.+.|..+......+.|.|...+.+
T Consensus       223 ~C~~~n~~~~~fg~gt~l~v~~~~~~  248 (253)
T 3uzq_A          223 FCQRSNEVPWTFGGGTKLEIKRPLEH  248 (253)
T ss_dssp             EEEECSSSSCCBCCCEEEEECCC---
T ss_pred             EEEEccCCCcEECCCEEEEEcCCCCC
Confidence            99999977666667788888765543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.84  E-value=5e-08  Score=61.98  Aligned_cols=71  Identities=11%  Similarity=0.111  Sum_probs=50.1

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+..|+.+.|.|.+. +.|.|.+.|++++..+....   ............ ....|..++..|.|.|.|.+.+..
T Consensus       118 ~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~---~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~  189 (312)
T 2y23_A          118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP---KYKMHIDRNTGI-IEMFMEKLQDEDEGTYTFQLQDGK  189 (312)
T ss_dssp             EECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSS---SCEEEEETTTTE-EEEEESCCCGGGCEEEEEEEESSS
T ss_pred             EEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCC---cEEEEEccCCCE-EEEEEccCCcccCEeEEEEEEeCC
Confidence            356799999999998 88999999999999876431   111111111222 334567889999999999997644

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.84  E-value=4.1e-08  Score=59.30  Aligned_cols=85  Identities=16%  Similarity=0.291  Sum_probs=52.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--ccCC-----CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--TSKS-----DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|.+.  |.+.+.|+|+  +....  ....     ....+......... ....|.+++.+|.|.|.|.+
T Consensus        11 ~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~   87 (211)
T 3tv3_L           11 SGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNT-ASLTVSGLQTDDEAVYYCGS   87 (211)
T ss_dssp             EECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTE-EEEEEESCCGGGCEEEEEEE
T ss_pred             EEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCE-EEEEECCCChhHCEEEEEEE
Confidence            567899999999988  8889999984  22211  0000     00011111111111 22345777999999999999


Q ss_pred             EeCCc-cceeeeEEEEEE
Q psy8666          73 RNSVG-TAVSRNATLQVA   89 (124)
Q Consensus        73 ~~~~~-~~~~~~~~l~v~   89 (124)
                      .+..+ ........|.|.
T Consensus        88 ~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           88 LVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             EETTTEEEECCCEEEEEC
T ss_pred             ecCCCceeECCCceEEEe
Confidence            99876 233556677776

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.84  E-value=3.5e-09  Score=63.58  Aligned_cols=89  Identities=20%  Similarity=0.310  Sum_probs=58.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccC-------CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK-------SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|++..+....       ......... ....+    .|.+++..|.|.|.|.+.+
T Consensus        15 ~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L----~i~~~~~~d~G~Y~C~~~~   89 (209)
T 1nbq_A           15 RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF-LPTGI----TFKSVTREDTGTYTCMVSE   89 (209)
T ss_dssp             CEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE-ETTEE----ECSCCCTTSCSEEEEEEEE
T ss_pred             EEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe-eccEE----EEeeCCHHHCcEEEEEEec
Confidence            46789999999999988999999999765421100       000011111 12222    4567799999999999999


Q ss_pred             CCccc-eeeeEEEEEEeeeeee
Q psy8666          75 SVGTA-VSRNATLQVAVVIFFI   95 (124)
Q Consensus        75 ~~~~~-~~~~~~l~v~~~~~~~   95 (124)
                      ..+.. .+..+.|.|..+|.+.
T Consensus        90 ~~g~~~~~~~~~l~V~~~p~~~  111 (209)
T 1nbq_A           90 EGGNSYGEVKVKLIVLVPPSKP  111 (209)
T ss_dssp             TTSSCEECCEEECCEEBCCCCC
T ss_pred             CCCCccceEEEEEEEecCCcCC
Confidence            86522 2456677777766543

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.83  E-value=6.7e-08  Score=53.29  Aligned_cols=72  Identities=25%  Similarity=0.344  Sum_probs=44.9

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+.+|+++.|.|...+.+  .+.+.|||+.  ...... .....+.... ..........|.+++.+|.|.|.|.+.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~-~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (113)
T 1sq2_N           11 TKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEES-ISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   87 (113)
T ss_dssp             EECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEE-CCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             EEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEe-EEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            567899999999987655  5679999853  221100 0011122111 1122233455788899999999999887

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.83  E-value=1.2e-07  Score=60.63  Aligned_cols=82  Identities=17%  Similarity=0.061  Sum_probs=53.5

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc---
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA---   79 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~---   79 (124)
                      +.+|+.+.|.|.+. .+.+.+.|+|++..+...     ................|..++.+|.|.|.|.+.|..+..   
T Consensus       130 v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s  203 (316)
T 3vh8_G          130 VKSGERVILQCWSD-IMFEHFFLHKEGISKDPS-----RLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLS  203 (316)
T ss_dssp             EETTCCEEEEEEES-SCCSEEEEEETTCCSCCE-----EEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCC
T ss_pred             cCCCCeEEEEEcCC-CCCcEEEEEECCCccccc-----eeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCcccc
Confidence            56899999999984 466789999998765321     000011111122233467789999999999999987642   


Q ss_pred             -eeeeEEEEEEe
Q psy8666          80 -VSRNATLQVAV   90 (124)
Q Consensus        80 -~~~~~~l~v~~   90 (124)
                       .+..+.|.|..
T Consensus       204 ~~s~~~~l~V~~  215 (316)
T 3vh8_G          204 APSDPLDIVVTG  215 (316)
T ss_dssp             CCCCCEEEEEEC
T ss_pred             CCCCCEEEEecC
Confidence             24456666653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.83  E-value=3.5e-08  Score=61.66  Aligned_cols=88  Identities=17%  Similarity=0.311  Sum_probs=55.3

Q ss_pred             EEecCCCEEEEEeeeccCCC-----eEEEEe--CCEEeeccCC-------CCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-----TIEWYK--DGELVETSKS-------DAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-----~v~w~k--~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+..|+.+.|.|.+.+.|.+     .+.|+|  ++..+.....       ....+........ .....|..++.+|.|.
T Consensus       132 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~DsG~  210 (256)
T 1nqb_A          132 PVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGT-DFTLKISRVEAEDLGV  210 (256)
T ss_dssp             EECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEE
T ss_pred             EEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCC-EEEEEECCCChHHCEE
Confidence            46789999999999888765     899999  5553321000       0001111111111 1234567889999999


Q ss_pred             EEEEeEeCCccceeeeEEEEEEe
Q psy8666          68 YWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      |.|.+.+......+....|.|..
T Consensus       211 Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          211 YYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             EEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEccCCceEECCCEEEEEEC
Confidence            99999986554445566777754

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.83  E-value=6.7e-09  Score=63.39  Aligned_cols=87  Identities=23%  Similarity=0.396  Sum_probs=57.0

Q ss_pred             EEecCCCEEEEEeeeccCC-CeEEEEeCCEE-----eeccC-CCC--CceEE----------EccCCcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE-PTIEWYKDGEL-----VETSK-SDA--KSQRV----------ILPTGSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~-p~v~w~k~g~~-----~~~~~-~~~--~~~~~----------~~~~~~~~~~~~i~~~~~   62 (124)
                      .+..|+.+.|.|.+.+.+. +.+.|++++..     +.... ...  .....          ....+.+    .|..++.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L----~i~~v~~   86 (231)
T 2pet_A           11 EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRL----VLAEAQV   86 (231)
T ss_dssp             EEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCE----EESSCCG
T ss_pred             EEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceE----EEcccCc
Confidence            4678999999999998885 88999975432     11000 000  01111          2233333    4577799


Q ss_pred             cCCeEEEEEeEeCC-ccceeeeEEEEEEeeee
Q psy8666          63 QDGGVYWCLARNSV-GTAVSRNATLQVAVVIF   93 (124)
Q Consensus        63 ~d~g~y~C~~~~~~-~~~~~~~~~l~v~~~~~   93 (124)
                      .|.|.|.|.+.+.. +.. +..+.|.|..+|.
T Consensus        87 ~D~G~Y~C~~~~~~~~~~-~~~~~l~V~~~p~  117 (231)
T 2pet_A           87 GDERDYVCVVRAGAAGTA-EATARLNVFAKPE  117 (231)
T ss_dssp             GGCEEEEEEEECGGGCEE-EEEEEEEEEBCCC
T ss_pred             ccCceEEEEEEecCCCce-EEEEEEEEEecCC
Confidence            99999999999987 444 6677888877653

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.83  E-value=1.5e-08  Score=59.81  Aligned_cols=82  Identities=18%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCC-------CCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD-------AKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLAR   73 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~   73 (124)
                      .+..|+.+.|.|...+ |.+.+.|+|++..+......       ...+... ..++++    .|.+++..|.|.|.|.+.
T Consensus         6 ~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL----~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            6 YGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL----TIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCE----EECSCCGGGCEEEEEECT
T ss_pred             EEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeE----EECCCChhhCceEEEEEe
Confidence            4678999999998844 88899999988754321000       0011112 133444    356679999999999999


Q ss_pred             eCCccceeeeEEEEEEee
Q psy8666          74 NSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        74 ~~~~~~~~~~~~l~v~~~   91 (124)
                      +..+   ...+.|.|..+
T Consensus        81 n~~~---~~~~~L~V~~~   95 (171)
T 1ccz_A           81 NITD---TMKFFLYVLEM   95 (171)
T ss_dssp             TCCS---CEEEEEEEECC
T ss_pred             CCCC---cEEEEEEEECc
Confidence            8776   34677777665

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.82  E-value=1.3e-08  Score=60.77  Aligned_cols=85  Identities=18%  Similarity=0.255  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEEeee--ccCCCeEEEEe--CCEEeeccCC-----CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAE--GKPEPTIEWYK--DGELVETSKS-----DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~--~~p~p~v~w~k--~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      ....|+.+.|.|...  +.+.+.+.|+|  ++..+.....     ....+.....++++.    |.+++.+|.|.|.|.+
T Consensus        10 ~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~----I~~v~~~DsG~Y~c~~   85 (182)
T 1hnf_A           10 WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLK----IKHLKTDDQDIYKVSI   85 (182)
T ss_dssp             EEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEE----ECSCCGGGCEEEEEEE
T ss_pred             EEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEE----ECCCChhhCEEEEEEE
Confidence            456899999999542  24567899999  8876531100     011333445666664    5666999999999999


Q ss_pred             EeCCccce-eeeEEEEEEe
Q psy8666          73 RNSVGTAV-SRNATLQVAV   90 (124)
Q Consensus        73 ~~~~~~~~-~~~~~l~v~~   90 (124)
                      .|..|... ...+.|.|..
T Consensus        86 ~n~~g~~~~~~~~~L~V~~  104 (182)
T 1hnf_A           86 YDTKGKNVLEKIFDLKIQE  104 (182)
T ss_dssp             EETTSCEEEEEEEEEEEEC
T ss_pred             EeCCCceeEEEEEEEEEcC
Confidence            99887652 2455677654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.82  E-value=2.1e-08  Score=63.13  Aligned_cols=79  Identities=16%  Similarity=0.231  Sum_probs=54.1

Q ss_pred             EEecCCCEEEEEeeeccCCCe-EEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-IEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+..|+.+.|.|.+.+.+.+. +.|++ ++..+...     ........+.+    .|..++..|.|.|.|.+.+.....
T Consensus       100 ~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~L----~i~~v~~~d~G~Y~C~a~~~~~~~  170 (289)
T 3ejj_X          100 TVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRK-----TVYFFSPWRGF----IIRKAKVLDSNTYVCKTMVNGRES  170 (289)
T ss_dssp             EEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTT-----CCEEEETTTEE----EESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEecCCceEeEEEccCCCcceEEEEEecCCeecCCC-----ccEEECCCCCE----EEeecccccCEEEEEEEEeCCCcc
Confidence            466799999999998877665 99986 55554321     22223334443    356669999999999999544333


Q ss_pred             eeeeEEEEEE
Q psy8666          80 VSRNATLQVA   89 (124)
Q Consensus        80 ~~~~~~l~v~   89 (124)
                      .+..+.|.|.
T Consensus       171 ~~~~~~l~V~  180 (289)
T 3ejj_X          171 TSTGIWLKVN  180 (289)
T ss_dssp             ECCCEEEEEE
T ss_pred             ccccEEEEEE
Confidence            3567788876

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.82  E-value=2.3e-08  Score=63.89  Aligned_cols=93  Identities=17%  Similarity=0.116  Sum_probs=52.8

Q ss_pred             EecCCCEEEEEeeeccCCC-----eEEEEeCCEEeeccCC--------CCCceEEEccC----CcEEEEEEEcCCCccCC
Q psy8666           3 VAKNEPVTLNCKAEGKPEP-----TIEWYKDGELVETSKS--------DAKSQRVILPT----GSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p-----~v~w~k~g~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~i~~~~~~d~   65 (124)
                      +..|+.+.|.|.+.+.+.+     .+.|+|++........        ...........    ........|.+++.+|.
T Consensus        12 ~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~   91 (313)
T 4fqp_A           12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDE   91 (313)
T ss_dssp             CBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGC
T ss_pred             EecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhC
Confidence            4579999999999876655     3899998753211000        00001111000    00001134677799999


Q ss_pred             eEEEEEeEeCCccceeeeEEEEEEeeeeee
Q psy8666          66 GVYWCLARNSVGTAVSRNATLQVAVVIFFI   95 (124)
Q Consensus        66 g~y~C~~~~~~~~~~~~~~~l~v~~~~~~~   95 (124)
                      |.|.|.+.+......+..+.|.+...|.+.
T Consensus        92 G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~  121 (313)
T 4fqp_A           92 GNYTCLFVTFPQGSRSVDIWLRVLAKPQNT  121 (313)
T ss_dssp             EEEEEEEECSSSCEEEEEEEECCBBCCEEE
T ss_pred             EEEEEEEeeccCcceeeeeeeeeccCCcce
Confidence            999998865433333556666666655443

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.82  E-value=4.1e-08  Score=55.19  Aligned_cols=87  Identities=18%  Similarity=0.240  Sum_probs=51.5

Q ss_pred             EEecCCCEEEEEeeeccCC---CeEEEEeCCEEee-----------ccCC-CCCceEEEccCC--cEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE---PTIEWYKDGELVE-----------TSKS-DAKSQRVILPTG--SLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~---p~v~w~k~g~~~~-----------~~~~-~~~~~~~~~~~~--~~~~~~~i~~~~~~d   64 (124)
                      ....|+++.|.|.....+.   ..+.|+|++....           .... ....+.......  .......|.+++.+|
T Consensus        16 ~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D   95 (125)
T 4gos_A           16 AGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTD   95 (125)
T ss_dssp             EEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGGG
T ss_pred             EEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChHH
Confidence            3457999999999864332   3589998653110           0000 001111111111  001123467889999


Q ss_pred             CeEEEEEeEeCCccceeeeEEEEEE
Q psy8666          65 GGVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      .|.|.|.+.+..+.. ...+.|.|-
T Consensus        96 ~G~Y~C~v~~~~g~~-~~~v~LkVG  119 (125)
T 4gos_A           96 AGTYKCYIITSKGKG-NANLEYKTG  119 (125)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CEEEEEEEEeCCCeE-EEEEEEEEC
Confidence            999999999988877 567777763

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.81  E-value=4.2e-08  Score=67.39  Aligned_cols=79  Identities=13%  Similarity=0.125  Sum_probs=53.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+.|...+.|++++..+....     .. ...+.. .....|.+++..|.|.|.|.+.|..+.. .
T Consensus        59 ~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~-----~~-~~~~r~-~~SL~I~~v~~~D~G~Y~C~~~n~~~~~-~  130 (527)
T 3qs9_E           59 EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQP-----HF-DLQNRG-VVSMVILKMTETQAGEYLLFIQSEATNY-T  130 (527)
T ss_dssp             EECSSCCEEEEEECSCCSSCEEEEEETTEEECCCC-----BC------C-EEEEEESSCCSSSCSEEEEEEEC--CEE-E
T ss_pred             EEeccccEEEEEEEecCCceeEEEEecCCccCccc-----cc-CCCcce-EEEEEECcCChhhCeeEEEEEEeccccE-E
Confidence            47789999999999887888899999988765321     11 111222 2334578889999999999999987665 3


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.+.+
T Consensus       131 ~~~~v~v  137 (527)
T 3qs9_E          131 ILFTVSI  137 (527)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            3444444

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.81  E-value=2.1e-08  Score=63.23  Aligned_cols=84  Identities=14%  Similarity=0.134  Sum_probs=54.5

Q ss_pred             ecCCCEEEEEeeeccCC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceee
Q psy8666           4 AKNEPVTLNCKAEGKPE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      ..|+.+.|.|.+.+.|. +.+.|++++..+....    ................|..++.+|.|.|.|.+.|..|.. +.
T Consensus       199 ~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~  273 (292)
T 4dkd_C          199 IRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQ----QSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKH-ST  273 (292)
T ss_dssp             CSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCB----EEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEE-EE
T ss_pred             ecCCCEEEEEEecCCCCceEEEEeCCCcccccCc----cceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCc-ee
Confidence            57999999999988665 4577888877554210    111111111122234567889999999999999999987 56


Q ss_pred             eEEEEEEeee
Q psy8666          83 NATLQVAVVI   92 (124)
Q Consensus        83 ~~~l~v~~~~   92 (124)
                      .+.|.|....
T Consensus       274 ~~~l~V~~~~  283 (292)
T 4dkd_C          274 SMFFRVVESA  283 (292)
T ss_dssp             EEEECC----
T ss_pred             EEEEEEeeCC
Confidence            7777776654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.80  E-value=4.9e-08  Score=58.76  Aligned_cols=66  Identities=21%  Similarity=0.260  Sum_probs=41.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+.+|+.+.|.|.+.+ +.+.+.|+|+|..+...     ........+.......|.+++  |.|.|.|.+.+.
T Consensus       118 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-----~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          118 TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR-----LPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE-----EECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ccCCCCeEEEEEeCCC-CCceEEEEECCcccCcc-----cccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            3568999999999876 56789999998765421     000111111111112233445  999999999864

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.80  E-value=3.2e-08  Score=62.41  Aligned_cols=66  Identities=17%  Similarity=0.335  Sum_probs=44.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+.+|+.+.|.|.+.+.    +.|+|++..+.       ........+.......|..++..|.|.|.|.+.|..|.
T Consensus        11 ~v~~G~~v~L~C~~~~~----v~W~~~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   76 (289)
T 3mjg_X           11 VLNVSSTFVLTCSGSAP----VVWERMSQEPP-------QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGL   76 (289)
T ss_dssp             ECCTTCCEEEEEEESSC----CEEEBTTBCCS-------EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC----
T ss_pred             EEeCCCcEEEEEeccce----EEEECCCCCcc-------cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCC
Confidence            46789999999998764    99999987653       12222233322233456778999999999999998865

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.80  E-value=1.4e-07  Score=57.73  Aligned_cols=88  Identities=16%  Similarity=0.316  Sum_probs=53.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eecc----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VETS----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+++.|.|.+.+.|.+.+.|+|+.  ..   +...    ......+......... ....|.+++.+|.|.|.|.+
T Consensus        35 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~  113 (237)
T 3sob_L           35 SASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTD-FTLTISSLQPEDFATYYCQQ  113 (237)
T ss_dssp             EEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             EEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCE-EEEEECCCChhhCeEEEEee
Confidence            4678999999999988888999999842  11   1100    0000111111111111 22356888999999999999


Q ss_pred             EeCCccceeeeEEEEEEe
Q psy8666          73 RNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~   90 (124)
                      .+..+........|.|..
T Consensus       114 ~~~~~~~~~~~~~l~V~~  131 (237)
T 3sob_L          114 SYTTPPTFGQGTKVEIKR  131 (237)
T ss_dssp             CSSSSCEECCCEEEEEEC
T ss_pred             ccCCceEEcCcEEEEEec
Confidence            887654334455666633

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.80  E-value=5.2e-08  Score=53.29  Aligned_cols=75  Identities=17%  Similarity=0.294  Sum_probs=45.4

Q ss_pred             EEecCCCEEEEEe-eeccC-CCeEEEEeCCEEeec----cC-C--CCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCK-AEGKP-EPTIEWYKDGELVET----SK-S--DAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~-~~~~p-~p~v~w~k~g~~~~~----~~-~--~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+++.|.|. ..+.+ .+.+.|||.......    .. .  ....+..... .........|.+++.+|.|.|.|.
T Consensus        11 ~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   90 (109)
T 1pew_A           11 SESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQ   90 (109)
T ss_dssp             EECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEEEEEE
Confidence            5678999999999 76554 478999997622110    00 0  0011222220 122223345788899999999999


Q ss_pred             eEeCC
Q psy8666          72 ARNSV   76 (124)
Q Consensus        72 ~~~~~   76 (124)
                      +.+..
T Consensus        91 ~~~~~   95 (109)
T 1pew_A           91 SYDAR   95 (109)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            98753

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.79  E-value=1.4e-07  Score=57.96  Aligned_cols=75  Identities=19%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCE--E---eeccCCC----CCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGE--L---VETSKSD----AKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~--~---~~~~~~~----~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+..|+.+.|.|.+.+.|.|.+.|+|++.  .   +......    ........ ..........|..++.+|.|.|.|.
T Consensus       138 ~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  217 (238)
T 2p1y_A          138 TVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCA  217 (238)
T ss_dssp             EEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEE
T ss_pred             EEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEE
Confidence            46789999999999998999999998631  1   1100000    00111111 0111123346788899999999999


Q ss_pred             eEeCC
Q psy8666          72 ARNSV   76 (124)
Q Consensus        72 ~~~~~   76 (124)
                      +.|..
T Consensus       218 a~n~~  222 (238)
T 2p1y_A          218 AIDTN  222 (238)
T ss_dssp             EEETT
T ss_pred             EeeCC
Confidence            99973

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.79  E-value=1.1e-07  Score=53.62  Aligned_cols=75  Identities=24%  Similarity=0.334  Sum_probs=46.7

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeC--CEEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKD--GELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~--g~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+.+|+++.|.|...+.  +.+.+.|||+  +....... ....+... ...........|.+++.+|.|.|.|.+.+..
T Consensus        11 ~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li-~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~   89 (126)
T 3moq_A           11 TKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSI-SIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYVF   89 (126)
T ss_dssp             EEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEEC-CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEEE
T ss_pred             EEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEE-EeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEEEcC
Confidence            56789999999998765  5677999984  32211000 01112211 1112223445678889999999999998865


Q ss_pred             c
Q psy8666          77 G   77 (124)
Q Consensus        77 ~   77 (124)
                      +
T Consensus        90 ~   90 (126)
T 3moq_A           90 F   90 (126)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.79  E-value=1.5e-07  Score=58.25  Aligned_cols=89  Identities=15%  Similarity=0.290  Sum_probs=53.2

Q ss_pred             EEecCCCEEEEEeeeccC-----CCeEEEEeCC--EEe--eccCC-----CCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-----EPTIEWYKDG--ELV--ETSKS-----DAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-----~p~v~w~k~g--~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+.+.|.|.+.+.|     .+.+.|+|+.  ..+  .....     ....+......... ....|.+++.+|.|.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~   90 (247)
T 1svz_A           12 PVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTD-FTLKISRVEAEDLGI   90 (247)
T ss_dssp             EECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEE
T ss_pred             EecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCE-EEEEECCCCHHHCEE
Confidence            567899999999998877     6889999842  211  10000     00111111111111 234568889999999


Q ss_pred             EEEEeEeCCccceeeeEEEEEEee
Q psy8666          68 YWCLARNSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v~~~   91 (124)
                      |.|.+.|..+...+....|.|..+
T Consensus        91 Y~C~~~n~~~~~~~~~~~l~V~~~  114 (247)
T 1svz_A           91 YYCFQGSHFPPTFGGGTKLEIKGG  114 (247)
T ss_dssp             EEEEECSSSSCEECCCEEEEEC--
T ss_pred             EEEEEccCCccEECCCEEEEEECC
Confidence            999999876543334456666553

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.79  E-value=1.4e-08  Score=61.92  Aligned_cols=71  Identities=23%  Similarity=0.460  Sum_probs=43.6

Q ss_pred             cCCCE-EEEEee-eccCCCeEEEEeCCEEeeccCCCC-CceE----EEccCCcEE--EEEEEcCCCccCCeEEEEEeEeC
Q psy8666           5 KNEPV-TLNCKA-EGKPEPTIEWYKDGELVETSKSDA-KSQR----VILPTGSLF--FLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         5 ~G~~~-~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~-~~~~----~~~~~~~~~--~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .|+.+ .|.|.+ .+.|.|.+.|+|++..+....... ....    .....+...  ....+......|.|.|.|.+.|.
T Consensus       132 ~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          132 EDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            56766 999999 899999999999998876432100 0000    011122111  11233333445699999999995

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.79  E-value=5.2e-08  Score=62.79  Aligned_cols=80  Identities=23%  Similarity=0.447  Sum_probs=56.9

Q ss_pred             EecCCCEEEEEe-----eeccCCCeEEEEeCCEEeeccCCCCCceEEEccC-CcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           3 VAKNEPVTLNCK-----AEGKPEPTIEWYKDGELVETSKSDAKSQRVILPT-GSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G~~~~l~C~-----~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +..|+.+.|.|.     ..+.|.+.+.|+|++..+....    ........ +.+    .|..++..|.|.|.|.+.|..
T Consensus       132 ~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~----~~~~~~~~~~~L----~i~~v~~~d~G~Y~C~a~n~~  203 (339)
T 3o4o_C          132 LTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN----EKFLSVRGTTHL----LVHDVALEDAGYYRCVLTFAH  203 (339)
T ss_dssp             EETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTC----SSEEECTTSSEE----EESSCCGGGCEEEEEEEECCB
T ss_pred             EECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCC----ceeEEcCCcceE----EEcccCHhhCeEEEEEEEECC
Confidence            567999999999     7888999999999998765321    12222222 223    456679999999999999987


Q ss_pred             ccc---eeeeEEEEEEe
Q psy8666          77 GTA---VSRNATLQVAV   90 (124)
Q Consensus        77 ~~~---~~~~~~l~v~~   90 (124)
                      +..   .+..+.|.|..
T Consensus       204 g~~~~~~~~~~~l~V~~  220 (339)
T 3o4o_C          204 EGQQYNITRSIELRIKK  220 (339)
T ss_dssp             TTBCCEEEEEEEEEEEC
T ss_pred             CCeEEEEEEEEEEEEEc
Confidence            642   24566777754

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.78  E-value=8.6e-08  Score=65.27  Aligned_cols=86  Identities=17%  Similarity=0.294  Sum_probs=53.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EEee---cc----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--ELVE---TS----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~~~---~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|++  ..+.   ..    ......+........ .....|.+++.+|.|.|.|.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a   89 (523)
T 2rcj_C           11 SGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGT-SASLAISGLEAEDESDYYCAS   89 (523)
T ss_pred             EEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCC-EEEEEECCCChhhCEEEEEEE
Confidence            5788999999999998899999999974  2111   00    000011111111122 223456778999999999999


Q ss_pred             EeCCccc--eeeeEEEEE
Q psy8666          73 RNSVGTA--VSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~--~~~~~~l~v   88 (124)
                      .|..|..  .+....|.|
T Consensus        90 ~n~~g~~~~~~~~~~l~V  107 (523)
T 2rcj_C           90 WNSSDNSYVFGTGTKVTV  107 (523)
T ss_pred             ccCCCccccccCceEEEe
Confidence            9976532  123456666

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.78  E-value=3e-07  Score=50.44  Aligned_cols=89  Identities=16%  Similarity=0.277  Sum_probs=52.4

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEeCCE-----Eeec-cCCC---CCceEEEc-cCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYKDGE-----LVET-SKSD---AKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k~g~-----~~~~-~~~~---~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      .+.+|+.+.|.|...+.. ...+.|+|...     .+.. ....   ...+.... ..........|.+++.+|.|.|.|
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C   91 (113)
T 1zox_A           12 SGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC   91 (113)
T ss_dssp             EEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCEEEEE
Confidence            577899999999987643 34699998642     1111 0000   00111111 111112334568889999999999


Q ss_pred             EeEeCCccceeeeEEEEEEee
Q psy8666          71 LARNSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        71 ~~~~~~~~~~~~~~~l~v~~~   91 (124)
                      .+.+..... ...+.|.|...
T Consensus        92 ~v~~~~~~~-~~~v~L~V~~~  111 (113)
T 1zox_A           92 GITKGGLDP-MFKVTVNIGPV  111 (113)
T ss_dssp             EECCSSSCC-EEEEEEEEECC
T ss_pred             eeEcCCCCc-cEEEEEEEEcC
Confidence            998864333 55666666543

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.78  E-value=3.9e-07  Score=56.90  Aligned_cols=93  Identities=24%  Similarity=0.332  Sum_probs=54.9

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEee--ccCC----------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVE--TSKS----------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~--~~~~----------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|.+.+.|  .+.+.|+|+  +..+.  ....          ....+..... .........|..++.+|
T Consensus        11 ~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   90 (256)
T 1nqb_A           11 LVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSED   90 (256)
T ss_dssp             EECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChhh
Confidence            467899999999998765  678999984  32221  0000          0001111111 11111234567889999


Q ss_pred             CeEEEEEeEeCCcc----ceeeeEEEEEEeeeee
Q psy8666          65 GGVYWCLARNSVGT----AVSRNATLQVAVVIFF   94 (124)
Q Consensus        65 ~g~y~C~~~~~~~~----~~~~~~~l~v~~~~~~   94 (124)
                      .|.|.|.+.+..+.    .....+.|.|...+.+
T Consensus        91 sG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v  124 (256)
T 1nqb_A           91 SAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIEL  124 (256)
T ss_dssp             CEEEEEEECCTTSSSSCSEECCCEEEEECCCCCE
T ss_pred             CEEEEEEEeeccCccceeEEcCceeeeecccccE
Confidence            99999999998652    1223456766655443

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.78  E-value=1.2e-07  Score=51.96  Aligned_cols=74  Identities=18%  Similarity=0.336  Sum_probs=46.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--E---Eeecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--E---LVETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~---~~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+++.|.|...+.+.+.+.|||..  .   .+... .   .....+........ .....|.+++.+|.|.|.|.+
T Consensus        15 ~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~-~~~L~I~~v~~~DsG~Y~C~~   93 (111)
T 1i3g_L           15 STSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGT-DFTLTISNVQSEDLADYFCQQ   93 (111)
T ss_dssp             ECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCSEEEEEE
T ss_pred             EEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCC-EEEEEECCCCHHHCEEEEEEE
Confidence            4678999999999987777889999853  1   11100 0   00011121111111 233457888999999999998


Q ss_pred             EeCC
Q psy8666          73 RNSV   76 (124)
Q Consensus        73 ~~~~   76 (124)
                      .+..
T Consensus        94 ~~~~   97 (111)
T 1i3g_L           94 YSSY   97 (111)
T ss_dssp             CSSS
T ss_pred             ecCC
Confidence            8753

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.78  E-value=1.5e-07  Score=59.08  Aligned_cols=83  Identities=16%  Similarity=0.114  Sum_probs=52.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC----c
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV----G   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~----~   77 (124)
                      .+.+|++++|.|.+.+ +.+.+.|+|+|..+....     ...............|..++..|.|.|.|.+.+..    .
T Consensus        17 ~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~   90 (257)
T 1b6u_A           17 LVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLH-----LIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQL   90 (257)
T ss_dssp             EEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEE-----EECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSC
T ss_pred             EecCCCCEEEEEecCC-CCcEEEEEECCCCCCcce-----eeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccc
Confidence            4678999999999864 567899999886543110     00000111122233467789999999999998642    1


Q ss_pred             cceeeeEEEEEEe
Q psy8666          78 TAVSRNATLQVAV   90 (124)
Q Consensus        78 ~~~~~~~~l~v~~   90 (124)
                      ...+..+.|.|..
T Consensus        91 s~~S~~~~L~V~~  103 (257)
T 1b6u_A           91 SAPSDPLDIVITG  103 (257)
T ss_dssp             CCCCCCEEEEEEC
T ss_pred             cccCCCEEEeccc
Confidence            2235667777764

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.78  E-value=2e-07  Score=57.88  Aligned_cols=88  Identities=18%  Similarity=0.296  Sum_probs=53.2

Q ss_pred             EEecCCCEEEEEeeeccC-----CCeEEEEeCC--EEe---ecc----CCCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-----EPTIEWYKDG--ELV---ETS----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-----~p~v~w~k~g--~~~---~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+..|+.+.|.|.+.+.+     .+.+.|+|++  ...   ...    ......+......+.. ....|.+++.+|.|.
T Consensus        45 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~  123 (252)
T 3bkj_L           45 PVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTD-FTLRISRVEAEDLGV  123 (252)
T ss_dssp             EECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEE
T ss_pred             EEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCE-EEEEECCCCcccCEE
Confidence            467899999999998877     6889999854  111   100    0000111111111211 234567889999999


Q ss_pred             EEEEeEeCCccceeeeEEEEEEe
Q psy8666          68 YWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      |.|.+.+..+........|.|..
T Consensus       124 Y~C~~~~~~~~~~~~~~~l~V~~  146 (252)
T 3bkj_L          124 YYCFQASLVPLTFGAGTKLELKR  146 (252)
T ss_dssp             EEEEECSBSSCEECCCEEEEECC
T ss_pred             EEEEEEcCCccEECCCEEEEEeC
Confidence            99999987654333345666653

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.77  E-value=1.7e-07  Score=53.36  Aligned_cols=89  Identities=16%  Similarity=0.234  Sum_probs=54.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC---CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc-
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD---GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG-   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~-   77 (124)
                      .+.+|+++.|.|...+. .+.+.|||.   |..+..-.+ ...++....... .....|.+++.+|.|.|.|.+.+..+ 
T Consensus        29 ~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~-~~~rf~~~~~~~-~~~L~I~~~~~~Dsg~Y~C~~~~~~~~  105 (134)
T 3kg5_A           29 ARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKL-EKGRMEESQNES-LATLTIQGIRFEDNGIYFCQQKCNNTS  105 (134)
T ss_dssp             EEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCC-CTTTEEEEECSS-EEEEEECSCCTTTCEEEEEEEECTTTC
T ss_pred             EEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEE-ECCeEEEEccCC-EEEEEECCCCcCcCEEEEEEEEcCCCC
Confidence            57789999999998764 577899987   333221111 112222222333 33455688899999999999887621 


Q ss_pred             -cceeeeEEEEEEeeee
Q psy8666          78 -TAVSRNATLQVAVVIF   93 (124)
Q Consensus        78 -~~~~~~~~l~v~~~~~   93 (124)
                       ........|.|...|.
T Consensus       106 ~~~fg~GT~L~V~~~p~  122 (134)
T 3kg5_A          106 EVYQGCGTELRVMGFST  122 (134)
T ss_dssp             CEEECCCEEEEEECC--
T ss_pred             ceEECCCEEEEEecCCC
Confidence             2234566777766543

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.77  E-value=1e-07  Score=52.11  Aligned_cols=91  Identities=16%  Similarity=0.282  Sum_probs=52.1

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEeCCEE--e---ec-cCC--CCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYKDGEL--V---ET-SKS--DAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k~g~~--~---~~-~~~--~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.+.|.|...... .+.+.|||....  .   .. ...  ....+..... .........|.+++.+|.|.|.|.
T Consensus         7 ~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~   86 (110)
T 2q87_A            7 AGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCG   86 (110)
T ss_dssp             EECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEEEEE
Confidence            577899999999986543 468999986421  1   10 000  0011111111 111123455788899999999999


Q ss_pred             eEeCC-ccceeeeEEEEEEeee
Q psy8666          72 ARNSV-GTAVSRNATLQVAVVI   92 (124)
Q Consensus        72 ~~~~~-~~~~~~~~~l~v~~~~   92 (124)
                      +.+.. |......+.+.|.++|
T Consensus        87 ~~~~~~g~~~~~~~~v~v~V~p  108 (110)
T 2q87_A           87 VDTPWLQDFHDPVVEVEVSVFP  108 (110)
T ss_dssp             EECTTSCCBCCCSEEEEEEEC-
T ss_pred             EecCccCccCCccEEEEEEEec
Confidence            99875 4111234555555544

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.77  E-value=5.7e-08  Score=53.07  Aligned_cols=72  Identities=19%  Similarity=0.317  Sum_probs=44.5

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+.+|+.+.|.|...+.+  .+.+.|||+.  ....... ....+... ...........|.+++.+|.|.|.|.+.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           11 TKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTI-SIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             EECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEEC-CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEE-EeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            467899999999987653  5679999853  2111000 01112211 11122233455788899999999999887

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.77  E-value=2.8e-08  Score=61.82  Aligned_cols=80  Identities=18%  Similarity=0.186  Sum_probs=52.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC--ccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV--GTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~--~~~   79 (124)
                      .+.+|+++.|.|.+.+. .+.+.|+|+|..+...      .........+    .|..++.+|.|.|.|.+.|..  ...
T Consensus       112 ~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~------~~~~~~~~~l----~I~~v~~~d~G~Y~C~a~n~~~~~s~  180 (242)
T 1p6f_A          112 EVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ------RGYGKVQAEF----PLGPVTTAHRGTYRCFGSYNNHAWSF  180 (242)
T ss_dssp             EEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE------EEECSSEEEE----EEEECCGGGCEEEEEEEEEETTEECC
T ss_pred             ccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc------ccCCCceEEE----EeCCCccccCEEEEEEEECCCCcccC
Confidence            35689999999998653 5689999998755420      0001111222    344558999999999999863  333


Q ss_pred             eeeeEEEEEEeee
Q psy8666          80 VSRNATLQVAVVI   92 (124)
Q Consensus        80 ~~~~~~l~v~~~~   92 (124)
                      .+..+.|.|..++
T Consensus       181 ~S~~~~l~V~~~~  193 (242)
T 1p6f_A          181 PSEPVKLLVTGDI  193 (242)
T ss_dssp             CCCCEEEEEEC--
T ss_pred             CCCCEEEEEeccC
Confidence            4678888887643

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.76  E-value=1.3e-08  Score=61.54  Aligned_cols=72  Identities=17%  Similarity=0.298  Sum_probs=46.6

Q ss_pred             cCCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEE--EEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           5 KNEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLF--FLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .|+.+.|.|.+.+. |. +.+.|+|+|..+......  ..... ..+...  ....|..++..|.|.|.|.+.|..+..
T Consensus       128 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~--~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3mj8_L          128 KTNQATLVCMINGFYPADVAVTWEADGTPITQGVKT--TQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTV  203 (213)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE--CCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEE
T ss_pred             cCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCccc--CCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccE
Confidence            58899999999875 44 489999999987532100  00011 222221  223445567789999999999987554

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.76  E-value=1.8e-08  Score=64.11  Aligned_cols=84  Identities=19%  Similarity=0.275  Sum_probs=56.1

Q ss_pred             cCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCCccc-e
Q psy8666           5 KNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSVGTA-V   80 (124)
Q Consensus         5 ~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~~~~-~   80 (124)
                      .|+.+.+.|.. .+.|.|.+.|++++..+...       ........  ......+...+..|.|.|.|.+.|..+.. .
T Consensus       128 ~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~-------~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  200 (308)
T 4fom_A          128 GNETVAAICIAATGKPVAHIDWEGDLGEMEST-------TTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDI  200 (308)
T ss_dssp             CSCEEEEEEEEEEEBSCCEEEECCCSSBCCEE-------EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCE
T ss_pred             CCceEEEEEEecCCcCCceEEEEECCcccccc-------cceeeeecccccccceEEeeeecCCccEEEEEEccCCCCce
Confidence            46778999975 68899999999998766421       11111221  12234456678899999999999987654 2


Q ss_pred             eeeEEEEEEeeeeee
Q psy8666          81 SRNATLQVAVVIFFI   95 (124)
Q Consensus        81 ~~~~~l~v~~~~~~~   95 (124)
                      ...+.|.|..+|.+.
T Consensus       201 ~~~~~l~V~~~P~~~  215 (308)
T 4fom_A          201 RYSFILDIQYAPEVS  215 (308)
T ss_dssp             EEEEECCCCEEEEEC
T ss_pred             EEeEEEEEecCCeeE
Confidence            345566676666554

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.76  E-value=2.2e-07  Score=53.60  Aligned_cols=90  Identities=16%  Similarity=0.326  Sum_probs=53.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--E---Eeecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--E---LVETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~---~~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+++.|.|...+.+.+.+.|||..  .   .+... .   .....+........ .....|.+++.+|.|.|.|.+
T Consensus        27 ~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~-~~sL~I~~v~~~DsG~Y~C~~  105 (146)
T 2yc1_B           27 SVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGT-DFTLTISSLEPEDFAIYYCQQ  105 (146)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCSEEEEEE
T ss_pred             EEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCC-EEEEEECCCCHHHCEEEEEEE
Confidence            4778999999999987777789999853  1   11110 0   00011221111111 233457888999999999999


Q ss_pred             EeCCccceeeeEEEEEEeee
Q psy8666          73 RNSVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~~~   92 (124)
                      .+...........|.|..++
T Consensus       106 ~~~~~~~fg~GT~L~V~~~~  125 (146)
T 2yc1_B          106 YRYSPRTFGQGTKVEIKRAA  125 (146)
T ss_dssp             CSSSSCEECCCEEEEEC---
T ss_pred             ecCCCCeECCCEEEEEeCCc
Confidence            87543333455677775543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.76  E-value=7.4e-09  Score=65.30  Aligned_cols=86  Identities=17%  Similarity=0.176  Sum_probs=58.5

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+...     ..........+    .|..++..|.|.|.|.+.|..+.
T Consensus       100 ~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~L----~i~~~~~~d~G~Y~C~a~n~~~~  169 (292)
T 4dkd_C          100 VVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRH-----TNYSFSPWHGF----TIHRAKFIQSQDYQCSALMGGRK  169 (292)
T ss_dssp             EEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSS-----CCEECCSSSCC----EETTCCGGGCSEEEEEECSTTSC
T ss_pred             EEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccC-----CcccccCCceE----EECCCCHHHCeEEEEEEEeCCCc
Confidence            3568999999999987 44  78999987 4433321     12222233333    35667899999999999988776


Q ss_pred             ceeeeEEEEEEe----eeeeeee
Q psy8666          79 AVSRNATLQVAV----VIFFISF   97 (124)
Q Consensus        79 ~~~~~~~l~v~~----~~~~~~~   97 (124)
                      ..+..+.|.|..    +|.+...
T Consensus       170 ~~s~~~~l~V~~~~~~~p~i~~~  192 (292)
T 4dkd_C          170 VMSISIRLKVQKVIPGPPALTLV  192 (292)
T ss_dssp             EECCCEEEEEECCCCSSCEEEEE
T ss_pred             eeEEEEEEEEeCCCCCCCeEEcc
Confidence            656678888876    5554433

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.76  E-value=9.5e-09  Score=63.43  Aligned_cols=86  Identities=21%  Similarity=0.322  Sum_probs=54.6

Q ss_pred             EEecCCCEEEEEeeec---cCCCeEEEEeCCEEee----cc-C--------------------CCCCceEEEcc--CCcE
Q psy8666           2 VVAKNEPVTLNCKAEG---KPEPTIEWYKDGELVE----TS-K--------------------SDAKSQRVILP--TGSL   51 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~---~p~p~v~w~k~g~~~~----~~-~--------------------~~~~~~~~~~~--~~~~   51 (124)
                      .+.+|+.+.|.|.+.+   .|.+.+.|+|++....    .. .                    .....+.....  ... 
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-   91 (250)
T 2fbo_J           13 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPT-   91 (250)
T ss_dssp             EECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCC-
T ss_pred             EEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcce-
Confidence            4678999999999987   7888999999864320    00 0                    00000111111  122 


Q ss_pred             EEEEEEcCCCccCCeEEEEEeEeCCccce----eeeEEEEEEee
Q psy8666          52 FFLRVVHGKKEQDGGVYWCLARNSVGTAV----SRNATLQVAVV   91 (124)
Q Consensus        52 ~~~~~i~~~~~~d~g~y~C~~~~~~~~~~----~~~~~l~v~~~   91 (124)
                         ..|.+++.+|.|.|.|.+.+..+...    +..+.|.|..+
T Consensus        92 ---L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  132 (250)
T 2fbo_J           92 ---LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  132 (250)
T ss_dssp             ---EEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred             ---EEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc
Confidence               34677799999999999999776431    34677777654

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.75  E-value=4.6e-08  Score=53.66  Aligned_cols=73  Identities=16%  Similarity=0.292  Sum_probs=44.7

Q ss_pred             EEecCCCEEEEEeeeccC----CCeEEEEeCC--EE---eeccC----CCCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP----EPTIEWYKDG--EL---VETSK----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p----~p~v~w~k~g--~~---~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|+.+.|.|...+.+    .+.+.|||+.  ..   +....    .....+........ .....|.+++.+|.|.|
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~-~~~L~I~~v~~~DsG~Y   90 (111)
T 1j05_L           12 AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRT-DFTLIIDPVEADDVATY   90 (111)
T ss_dssp             ECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETT-EEEEEESSCCGGGCEEE
T ss_pred             EEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCC-EEEEEECCCCcccCEEE
Confidence            467899999999987766    4679999852  21   11000    00011222211111 22345788899999999


Q ss_pred             EEEeEeC
Q psy8666          69 WCLARNS   75 (124)
Q Consensus        69 ~C~~~~~   75 (124)
                      .|.+.+.
T Consensus        91 ~C~~~~~   97 (111)
T 1j05_L           91 YCQQTNE   97 (111)
T ss_dssp             EEEECSS
T ss_pred             EEEEecC
Confidence            9998875

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.75  E-value=8.1e-08  Score=53.95  Aligned_cols=88  Identities=16%  Similarity=0.272  Sum_probs=54.1

Q ss_pred             EEecCCCEEEEEeeeccC----CCeEEEEeCC--EE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP----EPTIEWYKDG--EL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p----~p~v~w~k~g--~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|+++.|.|...+.+    .+.+.|||..  ..   +... .   .....+........ .....|.+++.+|.|.|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~-~~sL~I~~v~~~DsG~Y   90 (126)
T 4ffy_L           12 AVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSET-DFTLTIDSVETDDAATY   90 (126)
T ss_dssp             EEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT-EEEEEESSCCGGGCEEE
T ss_pred             EEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCC-EEEEEECCCCHHHCEEE
Confidence            578899999999998765    5679999842  11   1100 0   00011111111112 23455788899999999


Q ss_pred             EEEeEeCCccceeeeEEEEEEe
Q psy8666          69 WCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      .|.+.+.........+.|.|..
T Consensus        91 ~C~~~~~~~~~fg~gT~L~V~~  112 (126)
T 4ffy_L           91 YCQQNNEDPYTFGGGTKLEIKG  112 (126)
T ss_dssp             EEEECSSSSCEECCCEEEEEEC
T ss_pred             EEEEecCCCcEECCCEEEEEec
Confidence            9999886544445566777754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.75  E-value=3.2e-08  Score=63.34  Aligned_cols=82  Identities=18%  Similarity=0.168  Sum_probs=45.7

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc----
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT----   78 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~----   78 (124)
                      +..|+.+.|.|.+. .|.+.+.|+|+|..+...     ........+.......|..++  |.|.|.|.+.|..+.    
T Consensus       230 v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~-----~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s  301 (316)
T 3vh8_G          230 VQAGESVTLSCSSR-SSYDMYHLSREGGAHERR-----LPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWS  301 (316)
T ss_dssp             CCTTSCCEEEEEES-SCCSEEEEEETTSSCCEE-----EECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEEC
T ss_pred             ecCCCcEEEEEECC-CCCcEEEEEECCCcCCCc-----eeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhcc
Confidence            45799999999987 477899999998765421     011111222222233445556  999999999996543    


Q ss_pred             ceeeeEEEEEEeee
Q psy8666          79 AVSRNATLQVAVVI   92 (124)
Q Consensus        79 ~~~~~~~l~v~~~~   92 (124)
                      ..+..+.|.|...|
T Consensus       302 ~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          302 DPSDPLLVSVTGNP  315 (316)
T ss_dssp             CCCCCEEC------
T ss_pred             CCCCcEEEEEeCCC
Confidence            34667777776544

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.74  E-value=2.9e-07  Score=55.89  Aligned_cols=89  Identities=18%  Similarity=0.313  Sum_probs=52.7

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEeecc--CCC----------CCceEEEccC-CcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVETS--KSD----------AKSQRVILPT-GSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~~~--~~~----------~~~~~~~~~~-~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|+|+  +..+...  ...          ...+...... ........|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   90 (219)
T 1c1e_H           11 LKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNED   90 (219)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCccc
Confidence            467899999999998765  678999986  3322100  000          0011111110 0111234567889999


Q ss_pred             CeEEEEEeEeCCcc---ceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSVGT---AVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~~~---~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+..+.   .....+.|.|..
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  119 (219)
T 1c1e_H           91 MATYFCARGTTIVRAMDYWGQGTSLTVSS  119 (219)
T ss_dssp             CEEEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred             CEEEEEEEeccCcccceeecCceEEEEec
Confidence            99999999997631   122345666654

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.74  E-value=7.4e-08  Score=57.76  Aligned_cols=57  Identities=19%  Similarity=0.330  Sum_probs=40.8

Q ss_pred             CC-CEEEEEeeecc-CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc-cCCeEEEEEeEeCCccc
Q psy8666           6 NE-PVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE-QDGGVYWCLARNSVGTA   79 (124)
Q Consensus         6 G~-~~~l~C~~~~~-p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~d~g~y~C~~~~~~~~~   79 (124)
                      |. .+.|.|.+.+. |.|.+.|+++|..+..             ...+.+...    .. .|.|.|.|.+.|..+..
T Consensus       123 g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------------~~~l~i~~~----~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          123 MTCELHLTCSVEDADDNVSFRWEALGNTLSS-------------QPNLTVSWD----PRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             SSEEEEEEEEEESCCTTCEEEEEETTEEEES-------------SSEEEEEEC----TTTCSCCEEEEEEEETTEEE
T ss_pred             CCceEEEEEEEecCCCceEEEEEeCCEEcCC-------------CCeEEEEec----cCcCCCCcEEEEEECCCCcc
Confidence            44 79999999885 5789999999976542             112222211    33 38999999999998876

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.74  E-value=3.8e-08  Score=61.32  Aligned_cols=90  Identities=18%  Similarity=0.319  Sum_probs=55.9

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeC--CEEeec--cC-----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKD--GELVET--SK-----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~--g~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+++.|.|.+.+.+.+ .+.|+|+  +..+..  ..     .....+........ .....|.+++.+|.|.|.|.
T Consensus       152 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~  230 (257)
T 3gkz_A          152 SASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGT-SYSLTISSMEAEDAASYFCH  230 (257)
T ss_dssp             EECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEEEEEE
T ss_pred             EEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCC-EEEEEECCCChHHCEEEEEE
Confidence            46689999999999888877 8999983  322110  00     00001111111111 12345678899999999999


Q ss_pred             eEeCCccceeeeEEEEEEeee
Q psy8666          72 ARNSVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        72 ~~~~~~~~~~~~~~l~v~~~~   92 (124)
                      +.+...........|.|...+
T Consensus       231 ~~~~~~~~fg~gt~l~v~~~~  251 (257)
T 3gkz_A          231 QWSSFPFTFGSGTKLEIKRAP  251 (257)
T ss_dssp             ECSSSSCEECCCEEEEECCC-
T ss_pred             EccCCceEEcCCEEEEEEeCC
Confidence            988655555667777776544

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.73  E-value=1.5e-07  Score=58.61  Aligned_cols=88  Identities=19%  Similarity=0.269  Sum_probs=52.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EEee--ccC--CC----CCceEEE--ccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--ELVE--TSK--SD----AKSQRVI--LPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~~~--~~~--~~----~~~~~~~--~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|.+.+.|.+.+.|+|..  ....  ...  ..    ...+...  ..... .....|.+++.+|.|.|.
T Consensus        14 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~sL~I~~v~~~DsG~Y~   92 (256)
T 3tf7_C           14 TVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDS-SFHLRKASVHRSDSAVYF   92 (256)
T ss_dssp             EEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTT-EEEEEESSCCGGGCSEEE
T ss_pred             EecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCC-EEEEEECCCCcccCEEEE
Confidence            5678999999999998899999999832  1110  000  00    0011111  11122 223456888999999999


Q ss_pred             EEeEeCCccc---eeeeEEEEEEe
Q psy8666          70 CLARNSVGTA---VSRNATLQVAV   90 (124)
Q Consensus        70 C~~~~~~~~~---~~~~~~l~v~~   90 (124)
                      |.+.+..+..   ......|.|..
T Consensus        93 C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           93 CAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             EEEECTTCTTCEEECCCEEEEEEC
T ss_pred             EEEecCCCccceEECCCeEEEEeC
Confidence            9999875421   22344566654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.73  E-value=1.6e-08  Score=63.10  Aligned_cols=86  Identities=19%  Similarity=0.305  Sum_probs=52.5

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEe--CCEEeeccCC-------CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYK--DGELVETSKS-------DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR   73 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k--~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~   73 (124)
                      +.+|+.+.|.|.+.+.|.+.+.|+|  +|..+....+       ....+........ .....|..++.+|.|.|.|.+.
T Consensus       151 v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~  229 (257)
T 1f3r_B          151 ASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGT-DYTLTISSLQPEDVATYFCYQY  229 (257)
T ss_dssp             CCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBT-EEEEEECSCCGGGCSEEEEEEE
T ss_pred             EcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCC-EEEEEECCCChhhCEEEEEEEe
Confidence            4679999999999988888999999  5543211000       0001111111111 1234567889999999999999


Q ss_pred             eCCccceeeeEEEEEEe
Q psy8666          74 NSVGTAVSRNATLQVAV   90 (124)
Q Consensus        74 ~~~~~~~~~~~~l~v~~   90 (124)
                      |.. ......+.|.|..
T Consensus       230 n~~-~~~g~gt~l~V~~  245 (257)
T 1f3r_B          230 NNG-YTFGAGTKLELKA  245 (257)
T ss_dssp             SSS-EEECCCCEECCSS
T ss_pred             CCC-CeECCCEEEEEeC
Confidence            965 3333445555543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.73  E-value=6.8e-07  Score=54.81  Aligned_cols=89  Identities=22%  Similarity=0.295  Sum_probs=52.6

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEee----ccC--C------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVE----TSK--S------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~----~~~--~------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|.+.+.+  .+.+.|||+.  ..+.    ...  .      ....+..... .........|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   90 (227)
T 1mju_H           11 LVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDD   90 (227)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCccc
Confidence            467899999999998776  6789999853  2211    000  0      0001111111 01112234568889999


Q ss_pred             CeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+..+......+.|.|..
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~L~V~~  116 (227)
T 1mju_H           91 SAVYYCANKLGWFPYWGQGTLVTVSA  116 (227)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEECS
T ss_pred             CEEEEEEECCCCceEEcCcEEEEEcC
Confidence            99999999986432223345666654

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.73  E-value=1.4e-07  Score=51.25  Aligned_cols=87  Identities=14%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             EEecCCCEEEEEeeeccCC---CeEEEEeCCEE--------eeccCCC----CCceEEEccC-CcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE---PTIEWYKDGEL--------VETSKSD----AKSQRVILPT-GSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~---p~v~w~k~g~~--------~~~~~~~----~~~~~~~~~~-~~~~~~~~i~~~~~~d~   65 (124)
                      .+..|+++.|.|...+.+.   ..+.|+|....        +......    ...+...... ........|.+++.+|.
T Consensus         5 ~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~   84 (109)
T 2oyp_A            5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDH   84 (109)
T ss_dssp             EECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGGC
T ss_pred             EEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChhC
Confidence            5678999999999876543   34899986521        0000000    0011111111 00011234677799999


Q ss_pred             eEEEEEeEeCCccceeeeEEEEEE
Q psy8666          66 GVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        66 g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      |.|.|.+.+..+.. ...+.|.|.
T Consensus        85 G~Y~C~v~~~~~~~-~~~~~l~V~  107 (109)
T 2oyp_A           85 GTYCCRIQFPGLMN-DKKLELKLD  107 (109)
T ss_dssp             EEEEEEECCSSTTC-CEEEEEEEE
T ss_pred             eEEEEEEEcCCccc-ceEEEEEEE
Confidence            99999999876554 345555554

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.73  E-value=1e-06  Score=54.77  Aligned_cols=90  Identities=16%  Similarity=0.212  Sum_probs=50.8

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCC--EE--eecc---------CCCCCceEEEcc-CCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDG--EL--VETS---------KSDAKSQRVILP-TGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g--~~--~~~~---------~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d~   65 (124)
                      .+.+|+.+.|.|.+.+.  +.+.+.|+|..  ..  ....         ......+..... .........|.+++.+|.
T Consensus        19 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds   98 (257)
T 3gkz_A           19 LVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSEDT   98 (257)
T ss_dssp             EECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             EEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhhC
Confidence            46789999999999874  47889999832  11  1100         000011111111 111122345688899999


Q ss_pred             eEEEEEeEeCCc---cceeeeEEEEEEee
Q psy8666          66 GVYWCLARNSVG---TAVSRNATLQVAVV   91 (124)
Q Consensus        66 g~y~C~~~~~~~---~~~~~~~~l~v~~~   91 (124)
                      |.|.|.+.|..+   ...+....|.|..+
T Consensus        99 G~Y~C~~~n~~~~~~~~~~~~~~l~V~~~  127 (257)
T 3gkz_A           99 ATYYCSYFDSDDYAMEYWGQGTSVTVSGG  127 (257)
T ss_dssp             EEEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred             EEEEEEEecCCCcceeEEcCCEEEeecCc
Confidence            999999998621   11233456666554

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.73  E-value=7.6e-07  Score=54.96  Aligned_cols=89  Identities=17%  Similarity=0.287  Sum_probs=52.3

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEe--ecc----------CCCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELV--ETS----------KSDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~--~~~----------~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.|  .+.+.|+|+.  ...  ...          ......+..... .........|.+++.+|
T Consensus        13 ~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   92 (247)
T 2ghw_B           13 VVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAED   92 (247)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHHH
Confidence            467899999999998877  5789999842  111  100          000011211111 11112234568889999


Q ss_pred             CeEEEEEeEeCCcc-ceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSVGT-AVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~~~-~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.|..+. .......|.|..
T Consensus        93 ~G~Y~C~~~n~~~~~~~~~~~~l~V~~  119 (247)
T 2ghw_B           93 TAVYYCARDRSYYLDYWGQGTLVTVSS  119 (247)
T ss_dssp             CEEEEEEEEETTEEEEECCCEEEEECS
T ss_pred             CEEEEEeeeccCCccccCCceEEEEec
Confidence            99999999997322 123345666654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.73  E-value=9.4e-08  Score=60.49  Aligned_cols=87  Identities=16%  Similarity=0.312  Sum_probs=54.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe--CCEEeeccCC-------CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK--DGELVETSKS-------DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k--~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|.+.+.+ +.+.|+|  ++..+.....       ....+......... ....|..++.+|.|.|.|.+
T Consensus       173 ~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~DsG~Y~C~a  250 (282)
T 1qok_A          173 SASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTS-YSLTISRMEAEDAATYYCQQ  250 (282)
T ss_dssp             EECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             EEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCE-EEEEEccCChhHCEEEEEEE
Confidence            356899999999999888 8999999  5543321000       00111111111111 23456788999999999999


Q ss_pred             EeCCccceeeeEEEEEEe
Q psy8666          73 RNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~   90 (124)
                      .+......+..+.|.|..
T Consensus       251 ~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          251 RSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             CSSSSCEECCCEEEEEC-
T ss_pred             eeCCCceEeCCEEEEEec
Confidence            986544445566777753

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.72  E-value=5.4e-08  Score=59.81  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=49.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--c--cC------CCCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--T--SK------SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~--~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|. .+.|.+.+.|+|+  +....  .  ..      .....+..............|.+++.+|.|.|.
T Consensus        11 ~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~   89 (238)
T 2p1y_A           11 VAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYF   89 (238)
T ss_dssp             EEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEEEE
T ss_pred             EEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCeeEE
Confidence            5778999999999 7778899999985  22111  0  00      000011111111111122456788999999999


Q ss_pred             EEeEeCCcc----ceeeeEEEEEEe
Q psy8666          70 CLARNSVGT----AVSRNATLQVAV   90 (124)
Q Consensus        70 C~~~~~~~~----~~~~~~~l~v~~   90 (124)
                      |.+.+..+.    .......|.|..
T Consensus        90 C~~~~~~g~~~~~~~~~~~~l~V~~  114 (238)
T 2p1y_A           90 CASGDLGQTNERLFFGHGTKLSVLG  114 (238)
T ss_dssp             EEEEC------CEEECCCEEEEEEC
T ss_pred             EEEEeCCCccccceeCCCeEEEEec
Confidence            999987542    112344566644

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.72  E-value=5.1e-07  Score=56.17  Aligned_cols=74  Identities=16%  Similarity=0.318  Sum_probs=45.7

Q ss_pred             CEEecCCCEEEEEeeec--cCCCeEEEEeCC--EEee---cc---------CCCCCceEEEc--cCCcEEEEEEEcCCCc
Q psy8666           1 MVVAKNEPVTLNCKAEG--KPEPTIEWYKDG--ELVE---TS---------KSDAKSQRVIL--PTGSLFFLRVVHGKKE   62 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~--~p~p~v~w~k~g--~~~~---~~---------~~~~~~~~~~~--~~~~~~~~~~i~~~~~   62 (124)
                      +.+.+|+.+.|.|.+.+  .+.+.+.|+|..  ..+.   ..         ......+....  ..... ....|.+++.
T Consensus        16 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~-~~L~I~~v~~   94 (256)
T 3juy_B           16 EVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT-AYMELRSLRS   94 (256)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE-EEEEECSCCG
T ss_pred             ceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE-EEEEECCCCc
Confidence            35778999999999987  367889999732  1110   00         00001112111  11222 2345688899


Q ss_pred             cCCeEEEEEeEeC
Q psy8666          63 QDGGVYWCLARNS   75 (124)
Q Consensus        63 ~d~g~y~C~~~~~   75 (124)
                      +|.|.|.|.+.+.
T Consensus        95 ~DsG~Y~C~~~~~  107 (256)
T 3juy_B           95 ADTAVYYCARVGE  107 (256)
T ss_dssp             GGCEEEEEEECCC
T ss_pred             ccCEEEEEeEEec
Confidence            9999999999986

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.72  E-value=4.3e-07  Score=55.90  Aligned_cols=85  Identities=13%  Similarity=0.184  Sum_probs=49.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--------------EEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--------------ELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+..|+.+.|.|.+.+ +.+.+.|||..              ........  ..+..............|.+++.+|.|.
T Consensus        13 ~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~sL~I~~v~~~D~G~   89 (240)
T 3q5y_A           13 IKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFL--PSRFSVQQFDDYHSEMNMSALELEDSAM   89 (240)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSC--CTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred             eecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCccc--CCeEEEEeCCCCEEEEEECcCChhHCEE
Confidence            4678999999999876 78899999821              11111000  0111111111112234568889999999


Q ss_pred             EEEEeEe--CCccceeeeEEEEEE
Q psy8666          68 YWCLARN--SVGTAVSRNATLQVA   89 (124)
Q Consensus        68 y~C~~~~--~~~~~~~~~~~l~v~   89 (124)
                      |.|.+.+  ...........|.|.
T Consensus        90 Y~C~~~~~~~~~~~~~~~~~l~V~  113 (240)
T 3q5y_A           90 YFCASSLRWGDEQYFGPGTRLTVL  113 (240)
T ss_dssp             EEEEEESSTTBCCEECCCEEEEEE
T ss_pred             EEEEEccCCCcceEEcCCEEEEEe
Confidence            9999973  222222334556665

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=1.1e-07  Score=53.98  Aligned_cols=91  Identities=21%  Similarity=0.342  Sum_probs=53.1

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCE----EeeccCCCCCceEEEc----cCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGE----LVETSKSDAKSQRVIL----PTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~----~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+++.|.|...+. +.+.+.|||++.    .+.........+....    ..........|.+++.+|.|.|.|.+
T Consensus        19 ~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   98 (136)
T 2d9c_A           19 SVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVK   98 (136)
T ss_dssp             EEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEEEE
T ss_pred             EEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            56789999999998765 567899999752    1111100000011000    00011223456788999999999999


Q ss_pred             EeCCcc-----ceeeeEEEEEEeee
Q psy8666          73 RNSVGT-----AVSRNATLQVAVVI   92 (124)
Q Consensus        73 ~~~~~~-----~~~~~~~l~v~~~~   92 (124)
                      .+....     .....+.|.|..+|
T Consensus        99 ~~~~~~~~~~~~~g~~t~L~V~~~~  123 (136)
T 2d9c_A           99 FRKGSPDDVEFKSGAGTELSVRAKP  123 (136)
T ss_dssp             EECCSSSCEEEEECCCEEEEEECCC
T ss_pred             EeCCCCcccceeeCCCeEEEEEeCC
Confidence            875321     11245677777654

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.72  E-value=1.3e-07  Score=58.91  Aligned_cols=86  Identities=14%  Similarity=0.307  Sum_probs=52.3

Q ss_pred             EEecCCCEEEEEeeeccCC-CeEEEEeC--CEEeec--cCC-----CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPE-PTIEWYKD--GELVET--SKS-----DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~-p~v~w~k~--g~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.+.|.|.+.+.+. +.+.|+|.  +..+..  ...     ....+......... ....|.+++.+|.|.|.|.
T Consensus       160 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~DsG~Y~C~  238 (256)
T 3juy_B          160 SLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTD-FTLTITRVEPEDFALYYCQ  238 (256)
T ss_dssp             EECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCSEEEEE
T ss_pred             EEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCE-EEEEECCCCHhHCEEEEEE
Confidence            4568999999999988776 89999983  222110  000     00011111111222 2345688899999999999


Q ss_pred             eEeCCccceeeeEEEEE
Q psy8666          72 ARNSVGTAVSRNATLQV   88 (124)
Q Consensus        72 ~~~~~~~~~~~~~~l~v   88 (124)
                      +.|......+..+.|.|
T Consensus       239 ~~~~~~~~~g~gt~l~V  255 (256)
T 3juy_B          239 VYGASSYTFGQGTKLER  255 (256)
T ss_dssp             ECCSSCCEECCCEEEEE
T ss_pred             EeeCCCceEcCCEEEEE
Confidence            99865544455555554

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.72  E-value=5.5e-08  Score=54.13  Aligned_cols=87  Identities=14%  Similarity=0.260  Sum_probs=49.8

Q ss_pred             EEecCCCEEEEEeeeccC----CCeEEEEeCC----EEeeccCCCCCceEEEcc-C---CcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP----EPTIEWYKDG----ELVETSKSDAKSQRVILP-T---GSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p----~p~v~w~k~g----~~~~~~~~~~~~~~~~~~-~---~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+++.|.|.....+    .+.+.|||+.    ..+.........+..... .   ........|.+++.+|.|.|.
T Consensus        18 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   97 (120)
T 3noi_A           18 RTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYV   97 (120)
T ss_dssp             EEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGGCEEEE
T ss_pred             EEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhhCEEEE
Confidence            567899999999987654    4568999864    332211111112221111 0   111123346788999999999


Q ss_pred             EEeEeCC-ccceeeeEEEEE
Q psy8666          70 CLARNSV-GTAVSRNATLQV   88 (124)
Q Consensus        70 C~~~~~~-~~~~~~~~~l~v   88 (124)
                      |.+.... +........|.|
T Consensus        98 C~v~~~~~~~~fg~GT~l~V  117 (120)
T 3noi_A           98 CRVEVLGLGVGTGNGTRLVV  117 (120)
T ss_dssp             EEEEETTTEEEECCCEEEEE
T ss_pred             EEEEECCccceeCCCeEEEE
Confidence            9987532 222334445544

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.72  E-value=1.2e-07  Score=53.53  Aligned_cols=91  Identities=19%  Similarity=0.281  Sum_probs=55.1

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEeC--CEE---eec-cC-C---CCCceEEEcc-CCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYKD--GEL---VET-SK-S---DAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k~--g~~---~~~-~~-~---~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|...+.. ...+.|||.  +..   +.. .. .   ....++.... .........|.+++.+|.|.|.
T Consensus        12 ~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~   91 (129)
T 3rrq_A           12 VVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYL   91 (129)
T ss_dssp             EEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             EEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChhHCEEEE
Confidence            577899999999987654 456899973  211   110 00 0   0011222221 1222344567888999999999


Q ss_pred             EEeEeCCccc---eeeeEEEEEEeee
Q psy8666          70 CLARNSVGTA---VSRNATLQVAVVI   92 (124)
Q Consensus        70 C~~~~~~~~~---~~~~~~l~v~~~~   92 (124)
                      |.+.+..+..   .+..+.|.|...+
T Consensus        92 C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           92 CGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             EEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             EEEEecCCCceeeEeceEEEEEecCc
Confidence            9999876543   2456788886644

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.72  E-value=4.6e-09  Score=64.45  Aligned_cols=88  Identities=17%  Similarity=0.294  Sum_probs=40.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EEee--cc---C--CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--ELVE--TS---K--SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~~~--~~---~--~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|+.  ....  ..   .  .....+..... ........|.+++.+|.|.|.|.+
T Consensus        34 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~  112 (233)
T 3bqu_C           34 SMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG-YGTDFVFTIENMLSEDVADYYCLQ  112 (233)
T ss_dssp             -------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE-EEEEEEEC-----CCCCSEEEEEE
T ss_pred             EEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec-cCCEEEEEECCCCHHHCEEEEEEE
Confidence            4678999999999988888889999853  2110  00   0  00000100000 111112345666899999999999


Q ss_pred             EeCCccceeeeEEEEEEe
Q psy8666          73 RNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~   90 (124)
                      .+..+...+....|.|..
T Consensus       113 ~~~~~~~~~~~~~l~V~~  130 (233)
T 3bqu_C          113 SDNLPYTFGGGTNLEIKR  130 (233)
T ss_dssp             CSSSSCCBCCCCBC---C
T ss_pred             ecCCceeecCCEEEEEeC
Confidence            987654323333455543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.71  E-value=5.3e-08  Score=66.29  Aligned_cols=74  Identities=15%  Similarity=0.173  Sum_probs=48.3

Q ss_pred             ecCCCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcE--EEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           4 AKNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSL--FFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      ..|+.+.|.|.+.+.|++  .+.|+|+|..+......  ........+..  .....|..++..|.|.|.|.+.|..+..
T Consensus       127 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  204 (523)
T 2rcj_C          127 LQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVET--TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  204 (523)
T ss_pred             cCCCceEEEEEeccccCCceEEEEecCCCCCCCceEe--ccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccc
Confidence            358899999999987664  89999999876532100  00001112221  1223455668899999999999987765

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.71  E-value=7.9e-07  Score=55.23  Aligned_cols=90  Identities=16%  Similarity=0.248  Sum_probs=52.5

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCC--EEee---cc-CC---CCCceEEEccCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDG--ELVE---TS-KS---DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g--~~~~---~~-~~---~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      .+.+|+.+.|.|.+.+.  +.+.+.|+|+.  ....   .. ..   ....+......... ....|.+++.+|.|.|.|
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~DsG~Y~C   91 (256)
T 3ux9_B           13 SGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTS-ASLAITGLQSEDEADYYC   91 (256)
T ss_dssp             EECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTE-EEEEECSCCGGGCEEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCE-EEEEECCCChhhCEEEEE
Confidence            46789999999999876  77889999842  1111   00 00   00112212111222 234568889999999999


Q ss_pred             EeEeCCcc--ceeeeEEEEEEeee
Q psy8666          71 LARNSVGT--AVSRNATLQVAVVI   92 (124)
Q Consensus        71 ~~~~~~~~--~~~~~~~l~v~~~~   92 (124)
                      .+.+..+.  .......|.|...+
T Consensus        92 ~~~~~~~~~~~~~~~~~l~V~~~~  115 (256)
T 3ux9_B           92 QVRDNNENEWVFGGGTKLTVLGSG  115 (256)
T ss_dssp             EEEETTTTEEEECCCEEEEEC---
T ss_pred             EEEECCCCceEECCCEEEEEECCC
Confidence            99986432  22344566665543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.71  E-value=2.7e-07  Score=57.49  Aligned_cols=90  Identities=16%  Similarity=0.242  Sum_probs=48.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEe---eccC---------CCCCceEEE-ccCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV---ETSK---------SDAKSQRVI-LPTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~---~~~~---------~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|+.+.|.|.+.+.+.+.+.|+|.  +...   ....         ......... ...........|.+++.+|.|
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG   92 (259)
T 3omz_A           13 IRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSG   92 (259)
T ss_dssp             EEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCE
T ss_pred             EecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcccCE
Confidence            567899999999999888899999982  2111   1000         000000000 001111122456788999999


Q ss_pred             EEEEEeEeCCcc--ceeeeEEEEEEee
Q psy8666          67 VYWCLARNSVGT--AVSRNATLQVAVV   91 (124)
Q Consensus        67 ~y~C~~~~~~~~--~~~~~~~l~v~~~   91 (124)
                      .|.|.+.+..+.  .......|.|...
T Consensus        93 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~  119 (259)
T 3omz_A           93 VYYCATWDQNYYKKLFGSGTSLVVTDK  119 (259)
T ss_dssp             EEEEEEECTTSSCEEECCCEEEEEEC-
T ss_pred             EEEEEEeeCCccccEECCCCEEEEecC
Confidence            999999987652  2244556666553

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.71  E-value=3.9e-08  Score=63.10  Aligned_cols=86  Identities=17%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             EEecCCCEEEEEeeecc-----CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGK-----PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-----p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+..|+++.|.|.+.+.     |.+.+.|+++|..+...      .......+.......|.+++..|.|.|.|.+.+..
T Consensus        11 ~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~------~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~   84 (313)
T 2d9q_B           11 IVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG------RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNS   84 (313)
T ss_dssp             EECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC------EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSS
T ss_pred             EEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCcc------ceEEEecCeEEEEEEEeccCCCccceEEeeecCCC
Confidence            46789999999999886     56889999999866421      11111222111223457778999999999886544


Q ss_pred             ccceeeeEEEEEEeeeee
Q psy8666          77 GTAVSRNATLQVAVVIFF   94 (124)
Q Consensus        77 ~~~~~~~~~l~v~~~~~~   94 (124)
                      +.. ...+.|.+..+|..
T Consensus        85 ~~~-~~~~~l~v~~~P~~  101 (313)
T 2d9q_B           85 LQI-LDQVELRAGYPPAI  101 (313)
T ss_dssp             EEE-EEEEEEEECCCCCC
T ss_pred             cee-EEEEEEccCCCCCC
Confidence            333 34566666665543

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.70  E-value=1.4e-07  Score=51.95  Aligned_cols=86  Identities=20%  Similarity=0.326  Sum_probs=49.8

Q ss_pred             EEecCCCEEEEEeeeccC------CCeEEEEeCC--EE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGKP------EPTIEWYKDG--EL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p------~p~v~w~k~g--~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|+.+.|.|...+.+      .+.+.|||..  ..   +... .   .....+........ .....|.+++.+|.|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~DsG   90 (114)
T 1eeq_A           12 AVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGT-DFTLTISSLQAEDVA   90 (114)
T ss_dssp             EECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCE
T ss_pred             EEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCC-EEEEEECCCCcccCE
Confidence            567899999999987765      3679999853  21   1100 0   00011221111111 223457888999999


Q ss_pred             EEEEEeEeCCccceeeeEEEEE
Q psy8666          67 VYWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        67 ~y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      .|.|.+.+...........|.|
T Consensus        91 ~Y~C~~~~~~~~~fg~GT~l~V  112 (114)
T 1eeq_A           91 VYYCQQYYSHPYSFGQGTKLEI  112 (114)
T ss_dssp             EEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEEEeeCCeEEECCCEEEEE
Confidence            9999988753322233444444

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.69  E-value=1.2e-07  Score=51.79  Aligned_cols=83  Identities=19%  Similarity=0.254  Sum_probs=50.5

Q ss_pred             EEecCCCEEEEEee-eccCCCeEEEEeC-CEEeecc--C-------CCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKA-EGKPEPTIEWYKD-GELVETS--K-------SDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~-g~~~~~~--~-------~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+..|+++.|.|.. .+.+.+.+.|++. +..+...  .       .....+.... ....+    .|.+++.+|.|.|.
T Consensus        14 ~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL----~I~~v~~~DsG~Y~   89 (110)
T 2ptt_A           14 NAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGAL----HISNVRKEDKGTYY   89 (110)
T ss_dssp             EEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCE----EESSCCGGGCEEEE
T ss_pred             EEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccE----EECCCCcccCeEEE
Confidence            56789999999998 6667788999984 2222110  0       0000122222 22333    46777999999999


Q ss_pred             EEeEeCCccceeeeEEEEEEe
Q psy8666          70 CLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        70 C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      |.+.+... . ...+.|.|..
T Consensus        90 C~v~~~~~-~-~~~~~L~V~d  108 (110)
T 2ptt_A           90 MRVLRETE-N-ELKITLEVFD  108 (110)
T ss_dssp             EEEESSSB-C-CEEEEEEEEC
T ss_pred             EEEEcCCC-c-EEEEEEEEEc
Confidence            99987652 2 3355565543

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.69  E-value=1.7e-07  Score=52.03  Aligned_cols=75  Identities=20%  Similarity=0.360  Sum_probs=44.1

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCE----EeeccC--CCCCc-eEEE-ccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGE----LVETSK--SDAKS-QRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~----~~~~~~--~~~~~-~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+++.|.|...+. +.+.+.|||++.    .+....  ..... .... ...........|.+++.+|.|.|.|.+
T Consensus        18 ~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   97 (120)
T 2yz1_A           18 SVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYCVK   97 (120)
T ss_dssp             EECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEEEE
T ss_pred             EEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHCEEEEEEE
Confidence            46789999999998765 567899999751    111100  00000 0000 011111122346777999999999998


Q ss_pred             EeCC
Q psy8666          73 RNSV   76 (124)
Q Consensus        73 ~~~~   76 (124)
                      .+..
T Consensus        98 ~~~~  101 (120)
T 2yz1_A           98 FQKG  101 (120)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            8753

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.69  E-value=2.7e-07  Score=58.14  Aligned_cols=90  Identities=17%  Similarity=0.268  Sum_probs=52.4

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEee--c--cC--------CCCCceEEEccC-CcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVE--T--SK--------SDAKSQRVILPT-GSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~--~--~~--------~~~~~~~~~~~~-~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|+|++  ....  .  ..        .....+...... ........|.+++.+|
T Consensus       145 ~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  224 (276)
T 3auv_A          145 LVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAED  224 (276)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhH
Confidence            356799999999998776  5889999963  2110  0  00        000111111111 1111234567889999


Q ss_pred             CeEEEEEeEeCC----ccceeeeEEEEEEee
Q psy8666          65 GGVYWCLARNSV----GTAVSRNATLQVAVV   91 (124)
Q Consensus        65 ~g~y~C~~~~~~----~~~~~~~~~l~v~~~   91 (124)
                      .|.|.|.+.|..    .......+.|.|...
T Consensus       225 sG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~  255 (276)
T 3auv_A          225 TAVYYCARFVFFLPYAMDYWGQGTLVTVSSA  255 (276)
T ss_dssp             CEEEEEEEECSSTTCSCCCBCCCEEEEEC--
T ss_pred             CEEEEEEEEcCcCCcCceEECCCEEEEEccc
Confidence            999999999972    223344567777543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.69  E-value=4e-07  Score=55.14  Aligned_cols=87  Identities=17%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             EEecCCCEEEEEee-eccC-CCeEEEEeCC--EEee--cc---C--CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           2 VVAKNEPVTLNCKA-EGKP-EPTIEWYKDG--ELVE--TS---K--SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~~~p-~p~v~w~k~g--~~~~--~~---~--~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      .+..|+.+.|.|.+ .+.+ .+.+.|+|++  ..+.  ..   .  .....+......... ....|.+++.+|.|.|.|
T Consensus        11 ~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C   89 (216)
T 2xzc_L           11 SAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTS-ATLGITGLQTGDEADYYC   89 (216)
T ss_dssp             EECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTE-EEEEECSCCGGGCEEEEE
T ss_pred             EecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCE-EEEEECCCCcccCEEEEE
Confidence            46789999999995 4432 5789999843  2211  00   0  000111111111211 234567889999999999


Q ss_pred             EeEeCCc-cceeeeEEEEEE
Q psy8666          71 LARNSVG-TAVSRNATLQVA   89 (124)
Q Consensus        71 ~~~~~~~-~~~~~~~~l~v~   89 (124)
                      .+.|..+ ........|.|.
T Consensus        90 ~~~~~~~~~~~~~~~~l~V~  109 (216)
T 2xzc_L           90 GTWDSSLNPVFGGGTKLEIK  109 (216)
T ss_dssp             EEECTTSCEEEBCCEEEEEC
T ss_pred             EEEeCCCcceECCCEEEEEc
Confidence            9999875 222334556664

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.68  E-value=2.7e-07  Score=51.81  Aligned_cols=74  Identities=22%  Similarity=0.400  Sum_probs=44.2

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCEE----eeccCCCCCceEEEc----cCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGEL----VETSKSDAKSQRVIL----PTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~----~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+++.|.|...+. +.+.+.|||++..    +.........+....    ..........|.+++.+|.|.|.|.+
T Consensus        14 ~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   93 (127)
T 2jju_A           14 SVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVK   93 (127)
T ss_dssp             EEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGCEEEEEEE
T ss_pred             EEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHCEEEEEEE
Confidence            57789999999998765 5678999996521    111100000111110    00001122356778999999999999


Q ss_pred             EeC
Q psy8666          73 RNS   75 (124)
Q Consensus        73 ~~~   75 (124)
                      .+.
T Consensus        94 ~~~   96 (127)
T 2jju_A           94 FRK   96 (127)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            875

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.68  E-value=6.6e-07  Score=49.12  Aligned_cols=77  Identities=18%  Similarity=0.154  Sum_probs=44.8

Q ss_pred             EEecCCCEEEEEeeec-cCCCeEEEEeCCEE--------eeccCC----CCCceEEEccC-CcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDGEL--------VETSKS----DAKSQRVILPT-GSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~--------~~~~~~----~~~~~~~~~~~-~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+..|+.+.|.|.... ...+.+.|+|....        +.....    ....+...... ........|.+++.+|.|.
T Consensus         8 ~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~   87 (116)
T 2or8_A            8 KGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGL   87 (116)
T ss_dssp             EEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEE
T ss_pred             EEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccCEE
Confidence            5778999999999765 34567999997521        100000    00011111100 0011123467889999999


Q ss_pred             EEEEeEeCCcc
Q psy8666          68 YWCLARNSVGT   78 (124)
Q Consensus        68 y~C~~~~~~~~   78 (124)
                      |.|.+.+..+.
T Consensus        88 Y~C~v~~~~~~   98 (116)
T 2or8_A           88 YCCRVEIPGWF   98 (116)
T ss_dssp             EEEEECCSSTT
T ss_pred             EEEEEEcCCcc
Confidence            99999886543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.68  E-value=7.5e-07  Score=54.32  Aligned_cols=89  Identities=15%  Similarity=0.272  Sum_probs=53.0

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EE---eecc-C--------CCCCceEEEccC-CcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--EL---VETS-K--------SDAKSQRVILPT-GSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~---~~~~-~--------~~~~~~~~~~~~-~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|||+.  ..   +... .        .....+...... ........|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   90 (220)
T 2fbj_H           11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSED   90 (220)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGG
T ss_pred             EecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChhh
Confidence            467899999999998765  5789999842  21   1100 0        000112222211 1122334568889999


Q ss_pred             CeEEEEEeEeCCcc--ceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSVGT--AVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~~~--~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+..+.  .....+.|.|..
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~L~V~~  118 (220)
T 2fbj_H           91 TALYYCARLHYYGYNAYWGQGTLVTVSA  118 (220)
T ss_dssp             CEEEEEEEEETTTEEEEECCCEEEEECS
T ss_pred             CEEEEEEEeccccccceecCCEEEEecC
Confidence            99999999987542  123345677653

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.68  E-value=4.7e-07  Score=49.38  Aligned_cols=75  Identities=16%  Similarity=0.257  Sum_probs=46.7

Q ss_pred             CEEecCCCEEEEEeeeccCCC-----eEEEEeCCEE-e--eccCC--------CCCceEEEc-cCCcEEEEEEEcCCCcc
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEP-----TIEWYKDGEL-V--ETSKS--------DAKSQRVIL-PTGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p-----~v~w~k~g~~-~--~~~~~--------~~~~~~~~~-~~~~~~~~~~i~~~~~~   63 (124)
                      +.+..|+++.|.|...+.|.+     .+.|+|++.. +  .....        ....+.... .+..    ..|.+++.+
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~s----L~I~~v~~~   79 (110)
T 1ncn_A            4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWT----LRLHNLQIK   79 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTE----EEECSCCGG
T ss_pred             EEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEE----EEEcCCChH
Confidence            357789999999998765543     3899997642 1  00000        001111111 2222    346777999


Q ss_pred             CCeEEEEEeEeCCccc
Q psy8666          64 DGGVYWCLARNSVGTA   79 (124)
Q Consensus        64 d~g~y~C~~~~~~~~~   79 (124)
                      |.|.|.|.+.+..+..
T Consensus        80 D~G~Y~C~v~~~~~~~   95 (110)
T 1ncn_A           80 DKGLYQCIIHHKKPTG   95 (110)
T ss_dssp             GCEEEEEEEEEECSSS
T ss_pred             HCEEEEEEEEcCCCCc
Confidence            9999999999877654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.68  E-value=1.3e-07  Score=60.18  Aligned_cols=91  Identities=18%  Similarity=0.272  Sum_probs=55.1

Q ss_pred             EEecCCCEEEEEeeeccCCC------eEEEEeC--CEEee--ccCC-----CCCceEEEccCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP------TIEWYKD--GELVE--TSKS-----DAKSQRVILPTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p------~v~w~k~--g~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|+.+.|.|.+.+.+.+      .+.|+|+  +..+.  ....     ....+......... ....|.+++.+|.|
T Consensus       170 ~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~DsG  248 (291)
T 2gki_A          170 AVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTD-FTLTISSVQAEDLA  248 (291)
T ss_dssp             EEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCE
T ss_pred             EEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCE-EEEEECCCCHHHCE
Confidence            46789999999999887765      8999985  22111  0000     00111111111111 23456888999999


Q ss_pred             EEEEEeEeCCccceeeeEEEEEEeeee
Q psy8666          67 VYWCLARNSVGTAVSRNATLQVAVVIF   93 (124)
Q Consensus        67 ~y~C~~~~~~~~~~~~~~~l~v~~~~~   93 (124)
                      .|.|.+.+...........|.|...+.
T Consensus       249 ~Y~C~a~~~~~~~fg~gt~l~v~~~~~  275 (291)
T 2gki_A          249 VYYCKQSYYHMYTFGSGTKLEIKHHHH  275 (291)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEECC--
T ss_pred             EEEEEEccCCceEEcCCEEEEEEeeEc
Confidence            999999996554445566777766553

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.68  E-value=8.8e-07  Score=56.49  Aligned_cols=82  Identities=15%  Similarity=0.055  Sum_probs=51.8

Q ss_pred             EEecCCCEEEEEeeecc-------CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGK-------PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-------p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+..|+++.|.|.+.+.       |.|.+.|+|+|..+...      +...... . .....|.++...+ |.|.|.+.+
T Consensus        15 ~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~------~~~~~~~-~-~~~L~i~~~~~~~-g~Y~C~a~~   85 (303)
T 1i1r_A           15 VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE------QYTIINR-T-ASSVTFTDIASLN-IQLTCNILT   85 (303)
T ss_dssp             EEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG------GCEEEET-T-EEEEEECSCCCSE-EEEEEEEEE
T ss_pred             eEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh------heeeeCC-c-EEEEEEcCcCCCc-eEEEEeccc
Confidence            57789999999999863       77899999999877532      1111121 1 1223455666664 999999988


Q ss_pred             CCccce--eeeEEEEEEeeee
Q psy8666          75 SVGTAV--SRNATLQVAVVIF   93 (124)
Q Consensus        75 ~~~~~~--~~~~~l~v~~~~~   93 (124)
                      . |...  ...+.+.+..+|.
T Consensus        86 ~-g~~~~~~~~~~l~v~~~P~  105 (303)
T 1i1r_A           86 F-GQLEQNVYGITIISGLPPE  105 (303)
T ss_dssp             T-TTEEEEEEEEEEEEECCCC
T ss_pred             C-CCcceEEEEEEEeccCCCC
Confidence            4 3221  2334555555443

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.68  E-value=1.1e-06  Score=54.19  Aligned_cols=86  Identities=24%  Similarity=0.360  Sum_probs=49.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--------------CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--------------GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+..|+.+.|.| ..+.+.+.+.|||.              +......... ..+..............|.+++.+|.|.
T Consensus        13 ~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~sL~I~~v~~~D~G~   90 (245)
T 4ei6_B           13 IIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLF-KDQFSVERPDGSYFTLKIQPTALEDSAV   90 (245)
T ss_dssp             EEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTC-CTTEEEECCTTSCEEEEECSCCGGGCEE
T ss_pred             EecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCc-cCCEEEEeccCceEEEEECCCCHhHCEE
Confidence            567899999999 65778889999981              1111111000 0122222211112234568889999999


Q ss_pred             EEEEeEeCC---ccceeeeEEEEEE
Q psy8666          68 YWCLARNSV---GTAVSRNATLQVA   89 (124)
Q Consensus        68 y~C~~~~~~---~~~~~~~~~l~v~   89 (124)
                      |.|.+.+..   .........|.|.
T Consensus        91 Y~C~~~~~~~~~~~~~~~~~~l~V~  115 (245)
T 4ei6_B           91 YFCASSFWGAYAEQFFGPGTRLTVL  115 (245)
T ss_dssp             EEEEEECSSTTCCCEECCCEEEEEE
T ss_pred             EEEEEccCCCcceEEEcCCcEEEEe
Confidence            999998532   1222344566665

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.67  E-value=5.4e-08  Score=59.39  Aligned_cols=73  Identities=11%  Similarity=0.125  Sum_probs=47.5

Q ss_pred             EecCCCEEEEEeeecc---CC-CeEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           3 VAKNEPVTLNCKAEGK---PE-PTIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~---p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +..|+.+.|.|.+.+.   |. +.+.|+|++..+....   .........+.  ......|..++..|.|.|.|.+.|..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~---~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~   99 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ---TQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKD   99 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCE---EEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETT
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcc---cccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCc
Confidence            4579999999999877   33 6899999997654210   00011111111  11234456667899999999999986


Q ss_pred             cc
Q psy8666          77 GT   78 (124)
Q Consensus        77 ~~   78 (124)
                      +.
T Consensus       100 ~~  101 (218)
T 2rgs_A          100 LP  101 (218)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.67  E-value=1.3e-06  Score=53.39  Aligned_cols=89  Identities=18%  Similarity=0.291  Sum_probs=53.0

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEee--c--c--------CCCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVE--T--S--------KSDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~--~--~--------~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|||+.  ..+.  .  .        ......+..... .........|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   90 (225)
T 1op3_H           11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVED   90 (225)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChhh
Confidence            467899999999998766  6789999852  2111  0  0        000011111111 11112234568889999


Q ss_pred             CeEEEEEeEeCCc-----c--ceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSVG-----T--AVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~~-----~--~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+..+     .  .....+.|.|..
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (225)
T 1op3_H           91 TAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSP  123 (225)
T ss_dssp             CEEEEEEEECCSSCCSSCCEEEECCCEEEEEES
T ss_pred             CEEEEEEEecCCCccccccceeecCCEEEeccc
Confidence            9999999998754     1  122345777764

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.67  E-value=3.5e-08  Score=59.63  Aligned_cols=63  Identities=17%  Similarity=0.342  Sum_probs=42.0

Q ss_pred             ecCCCEEEEEeeecc----CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           4 AKNEPVTLNCKAEGK----PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~----p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+|+.+.|.|.+.+.    |.|.+.|+|++......      .  ....+.+    .|..+...|.|.|.|.+.|..+.
T Consensus       136 ~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~------~--~~~~~~L----~i~~~~~~~~g~Y~C~a~n~~~~  202 (214)
T 2zg1_A          136 ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP------E--TTRSSEL----TLTPRPEDHGTNLTCQMKRQGAQ  202 (214)
T ss_dssp             CTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS------S--CCCSSEE----EECCCTTCCSCEEEEEEECC---
T ss_pred             cCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC------C--ceeEEEE----EEecccHHcCcEEEEEEEeCCCC
Confidence            468999999998764    78999999988543211      0  0122223    23445788899999999997543

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.67  E-value=2.1e-07  Score=61.86  Aligned_cols=88  Identities=16%  Similarity=0.293  Sum_probs=54.0

Q ss_pred             EEecCCCEEEEEeeeccCC----CeEEEEeCC--EEee--cc-----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPE----PTIEWYKDG--ELVE--TS-----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~----p~v~w~k~g--~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|+.+.|.|.+.+.|.    +.+.|+|++  ..+.  ..     ......+......... ....|.+++.+|.|.|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y   90 (438)
T 1qgc_4           12 AVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTD-FTLTIDPVEADDVATY   90 (438)
T ss_dssp             EECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTE-EEEEESSCCGGGCEEE
T ss_pred             EeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCc-EEEEeCCCcCcCCeeE
Confidence            4678999999999988776    489999963  2221  00     0000111111111111 2345678899999999


Q ss_pred             EEEeEeCCccceeeeEEEEEEe
Q psy8666          69 WCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      .|.+.|..+...+....|.|..
T Consensus        91 ~C~a~n~~~~~~~~~~~l~V~~  112 (438)
T 1qgc_4           91 YCQQSNEVPLTFGAGTKLDLKR  112 (438)
T ss_dssp             EEEECSSTTCCBCCCEEEEECC
T ss_pred             EEEEecCCCccccCceeEEecC
Confidence            9999998765434456666643

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.66  E-value=3.3e-08  Score=69.50  Aligned_cols=87  Identities=20%  Similarity=0.326  Sum_probs=56.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc---
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT---   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~---   78 (124)
                      .+..|+.+.|.|.+.+ |.|.+.|++++..+....    ..+.....+.+.    |..++..|.|.|.|.+.+..+.   
T Consensus       544 ~v~~g~~~~L~C~~~s-p~a~v~W~~~~~~l~~~~----~~~~~~~~~~Ll----I~~v~~~DsG~Y~C~A~e~~~~~~~  614 (663)
T 1olz_A          544 FFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAES----PKYGLMGRKNLL----IFNLSEGDSGVYQCLSEERVKNKTV  614 (663)
T ss_dssp             EEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCS----SSBCCTTTTCEE----ECSCCGGGCEEEEEEEEEECSSSEE
T ss_pred             EEecCCcEEEEccCCC-CCCcEEEEECCeeccccC----cceEEecCCeEE----EEecCcccCeEEEEEEEECccCCCc
Confidence            4678999999999988 999999999997654211    111222344443    4555899999999999997421   


Q ss_pred             c-eeeeEEEEEEeeeeeeee
Q psy8666          79 A-VSRNATLQVAVVIFFISF   97 (124)
Q Consensus        79 ~-~~~~~~l~v~~~~~~~~~   97 (124)
                      . ......|.|..+|.+...
T Consensus       615 ~~~~~~~~l~V~v~P~~~~~  634 (663)
T 1olz_A          615 FQVVAKHVLEVKVVPKPVVA  634 (663)
T ss_dssp             EEEEEEEEEEEEC-------
T ss_pred             eEEEEEEEEEEEeCCccCCC
Confidence            1 135677888887765544

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.66  E-value=3.9e-08  Score=61.76  Aligned_cols=81  Identities=20%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc---cCCcEEEEEEEcCCCccCCeEEEEEeEeCC---
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL---PTGSLFFLRVVHGKKEQDGGVYWCLARNSV---   76 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~---   76 (124)
                      +.+|+++.|.|.+.+. .+.+.|+|+|..+.....    .....   ....+.    |.+++  |.|.|.|.+.+..   
T Consensus       118 V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~----~~~~~~~~~~~~l~----I~~v~--D~G~Y~C~a~~~~~p~  186 (257)
T 1b6u_A          118 VLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFS----AGPKVNGTFQADFP----LGPAT--HGGTYRCFGSFRDSPY  186 (257)
T ss_dssp             CBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCB----CBCCSSSCCBEEEE----EEECC--SCEEEEEEEECSSCTT
T ss_pred             cCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccc----cccccCCceeEEEE----ecccc--cCEEEEEEEEcCCCCc
Confidence            4679999999998764 468999999976543210    00000   012222    23335  9999999999752   


Q ss_pred             -ccceeeeEEEEEEeeeee
Q psy8666          77 -GTAVSRNATLQVAVVIFF   94 (124)
Q Consensus        77 -~~~~~~~~~l~v~~~~~~   94 (124)
                       ....+..+.|.|..+|..
T Consensus       187 ~~s~~S~pl~L~V~g~p~~  205 (257)
T 1b6u_A          187 EWSNSSDPLLVSVTGNPSN  205 (257)
T ss_dssp             BBCCCCCCEEECCBCCC--
T ss_pred             ccccCCCCEEEEEeccCCC
Confidence             233467788888877543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.66  E-value=8.3e-08  Score=57.97  Aligned_cols=72  Identities=18%  Similarity=0.373  Sum_probs=45.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEeec--c-----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVET--S-----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|+  +..+..  .     ......+......... ....|.+++.+|.|.|.|.+
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~   88 (212)
T 1nfd_E           10 SVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTT-ATLTISGAQPEDEAAYYCLS   88 (212)
T ss_dssp             EEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTE-EEEEETTCCGGGCSEEEEEE
T ss_pred             EEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCE-EEEEECcCCcccCEEEEEEE
Confidence            577899999999988888888999984  332210  0     0000111111111111 23456888999999999999


Q ss_pred             Ee
Q psy8666          73 RN   74 (124)
Q Consensus        73 ~~   74 (124)
                      .|
T Consensus        89 ~n   90 (212)
T 1nfd_E           89 SY   90 (212)
T ss_dssp             EE
T ss_pred             Ec
Confidence            97

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.66  E-value=1.2e-06  Score=53.22  Aligned_cols=90  Identities=13%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             CEEecCCCEEEEEeeeccC--CCeEEEEeCC--EEee---c---c--------CCCCCceEEEcc-CCcEEEEEEEcCCC
Q psy8666           1 MVVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVE---T---S--------KSDAKSQRVILP-TGSLFFLRVVHGKK   61 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~---~---~--------~~~~~~~~~~~~-~~~~~~~~~i~~~~   61 (124)
                      +.+..|+.+.|.|.+.+.+  .+.+.|+|+.  ....   .   .        ......+..... .........|.+++
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   89 (222)
T 1q9r_B           10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (222)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCC
Confidence            3577899999999998765  6789999842  2110   0   0        000011111111 11112234568889


Q ss_pred             ccCCeEEEEEeEeCCcc----ceeeeEEEEEEe
Q psy8666          62 EQDGGVYWCLARNSVGT----AVSRNATLQVAV   90 (124)
Q Consensus        62 ~~d~g~y~C~~~~~~~~----~~~~~~~l~v~~   90 (124)
                      .+|.|.|.|.+.+..+.    .......|.|..
T Consensus        90 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  122 (222)
T 1q9r_B           90 AEDSATYYCARDHDGYYERFSYWGQGTLVTVSA  122 (222)
T ss_dssp             GGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS
T ss_pred             cccCeEEEEEEeccCCcccceEeCCceEEEecc
Confidence            99999999999986541    112345666653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.66  E-value=1.6e-07  Score=58.97  Aligned_cols=89  Identities=21%  Similarity=0.322  Sum_probs=54.2

Q ss_pred             EEecCCCEEEEEeeeccC------CCeEEEEeC--CEEee--ccC-----CCCCceEEEccCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGKP------EPTIEWYKD--GELVE--TSK-----SDAKSQRVILPTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p------~p~v~w~k~--g~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|+.+.|.|.+.+.+      .+.+.|+|+  +..+.  ...     .....+........ .....|.+++.+|.|
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~-~~~L~I~~v~~~DsG   94 (264)
T 2gjj_A           16 PVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGT-DFTLTIGSVKAEDLA   94 (264)
T ss_dssp             EEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT-EEEEEESSCCGGGCE
T ss_pred             EecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCC-EEEEEECCCCHHHCE
Confidence            577899999999998877      678999984  32111  000     00011111111111 123456888999999


Q ss_pred             EEEEEeEeCCccceeeeEEEEEEee
Q psy8666          67 VYWCLARNSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        67 ~y~C~~~~~~~~~~~~~~~l~v~~~   91 (124)
                      .|.|.+.+..+........|.|..+
T Consensus        95 ~Y~C~~~~~~~~~~~~~~~L~V~~~  119 (264)
T 2gjj_A           95 VYYCQQYSNYPWTFGGGTRLEIKRG  119 (264)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEECC
T ss_pred             EEEEEEecCCccEecCCEEEEEEcC
Confidence            9999999875433334556777654

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.65  E-value=5.5e-08  Score=54.33  Aligned_cols=88  Identities=19%  Similarity=0.237  Sum_probs=54.3

Q ss_pred             CEEecCCCEEEEEee-eccCCCeEEEEeCCE-EeeccC--------CCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGE-LVETSK--------SDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~-~~~~~~--------~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      +.+.+|+++.|.|.. .......+.||+... .+....        .....+.... .++++    .|.+++.+|.|.|.
T Consensus        14 v~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL----~I~nv~~~DsG~Y~   89 (121)
T 2edo_A           14 MTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGAL----YISKVQKEDNSTYI   89 (121)
T ss_dssp             CEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCE----EESSCCGGGCSEEE
T ss_pred             EEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceE----EEeCCCHHHCeEEE
Confidence            357789999999986 333455789998653 221100        0001111222 33444    45677999999999


Q ss_pred             EEeEeCCccceeeeEEEEEEeee
Q psy8666          70 CLARNSVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        70 C~~~~~~~~~~~~~~~l~v~~~~   92 (124)
                      |...+..+......+.|.|..++
T Consensus        90 c~v~~~~~~~~~~~~~L~V~~~~  112 (121)
T 2edo_A           90 MRVLKKTGNEQEWKIKLQVLDPV  112 (121)
T ss_dssp             EEEEETTTEEEECCEECEEECCS
T ss_pred             EEEEcCCCcEEEEEEEEEEECCC
Confidence            99988665444567778776643

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.65  E-value=6.4e-07  Score=49.68  Aligned_cols=87  Identities=22%  Similarity=0.252  Sum_probs=49.1

Q ss_pred             EEecCCCEEEEEeeecc----CCCeEEEEeCCEE------eecc--C-------CCCCceEEEc-----cCCcEEEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGK----PEPTIEWYKDGEL------VETS--K-------SDAKSQRVIL-----PTGSLFFLRVV   57 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~----p~p~v~w~k~g~~------~~~~--~-------~~~~~~~~~~-----~~~~~~~~~~i   57 (124)
                      .+..|+.+.|.|.....    +.+.+.|++++..      +...  .       .....+....     .+.+    ..|
T Consensus        10 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s----L~I   85 (124)
T 1neu_A           10 YGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS----IVI   85 (124)
T ss_dssp             EEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC----EEE
T ss_pred             EEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEE----EEE
Confidence            56789999999997542    4678999975320      1100  0       0001111111     1122    346


Q ss_pred             cCCCccCCeEEEEEeEeCCcc-ceeeeEEEEEEeee
Q psy8666          58 HGKKEQDGGVYWCLARNSVGT-AVSRNATLQVAVVI   92 (124)
Q Consensus        58 ~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~~   92 (124)
                      .+++.+|.|.|.|.+.+..+. .....+.|.|...|
T Consensus        86 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           86 HNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV  121 (124)
T ss_dssp             CSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC--
T ss_pred             ccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence            777999999999999987654 23456677776544

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.65  E-value=5.9e-08  Score=58.62  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=44.7

Q ss_pred             cCCCEEEEEeeeccC-CC-eEEEEeCCEEeeccCCCCCceEEEccCCcE--EEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           5 KNEPVTLNCKAEGKP-EP-TIEWYKDGELVETSKSDAKSQRVILPTGSL--FFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p-~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .|+.+.|.|.+.+.+ .+ .+.|+|+|..+.....  .........+..  .....|...+..|.|.|.|.+.|....
T Consensus       129 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~--~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          129 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGME--TTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE--ECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             cCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCee--cCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            477899999998754 43 7999999988753210  000111122221  122334444667899999999997543

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.65  E-value=1.7e-07  Score=51.86  Aligned_cols=73  Identities=19%  Similarity=0.356  Sum_probs=44.6

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCC--E--Eee--cc--CCC--CCceEEEc-cCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDG--E--LVE--TS--KSD--AKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g--~--~~~--~~--~~~--~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|...+. +.+.+.|||..  .  .+.  ..  ...  ...+.... ..........|.+++.+|.|.|.
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   90 (116)
T 1fo0_A           11 SVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYF   90 (116)
T ss_dssp             EEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             EEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEE
Confidence            57789999999998765 55689999842  2  111  00  000  01112221 11112234557888999999999


Q ss_pred             EEeEe
Q psy8666          70 CLARN   74 (124)
Q Consensus        70 C~~~~   74 (124)
                      |.+.+
T Consensus        91 C~~~~   95 (116)
T 1fo0_A           91 CAMRG   95 (116)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99887

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.65  E-value=4.9e-07  Score=60.37  Aligned_cols=79  Identities=15%  Similarity=0.169  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEEeeecc-C--CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCe--EEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGK-P--EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG--VYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p--~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g--~y~C~~~~~~   76 (124)
                      .+..|+.+.|.|.+.+. |  .+.+.|++++..+..       .. ............+ .++.+|.|  .|.|.+.|..
T Consensus       199 ~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~-------~~-~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~  269 (450)
T 1z7z_I          199 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-------TV-TYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGN  269 (450)
T ss_dssp             EEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC-------EE-EEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETT
T ss_pred             eEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc-------eE-EecCCceeEEEEE-EeEhhhCCcEEEEEEEccCC
Confidence            46789999999999988 7  789999999987652       11 1122222222121 44789999  9999999998


Q ss_pred             ccceeeeEEEEEEe
Q psy8666          77 GTAVSRNATLQVAV   90 (124)
Q Consensus        77 ~~~~~~~~~l~v~~   90 (124)
                      +.. .....|.|..
T Consensus       270 g~~-~~~~~l~V~~  282 (450)
T 1z7z_I          270 QSQ-ETLQTVTIYS  282 (450)
T ss_dssp             EEE-EEEEEEEEEC
T ss_pred             ccE-EEEEEEEEec
Confidence            876 4567777776

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.65  E-value=3.5e-07  Score=50.81  Aligned_cols=89  Identities=17%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             EEecCCCEEEEEeeeccC---CCeEEEEeCC--EEe--eccC-----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP---EPTIEWYKDG--ELV--ETSK-----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p---~p~v~w~k~g--~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|...+.+   .+.+.|||..  ...  ....     .....+........ .....|.+++.+|.|.|.
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~-~~~L~I~~~~~~DsG~Y~   89 (120)
T 1oaq_L           11 TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGN-KAALTITGAQTEDEAIYF   89 (120)
T ss_dssp             EECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETT-EEEEEEESCCGGGCEEEE
T ss_pred             EEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCC-eEEEEECCCChhhCeEEE
Confidence            567899999999987665   5679999842  211  1000     00011221211122 233456788999999999


Q ss_pred             EEeEeCCccceeeeEEEEEEee
Q psy8666          70 CLARNSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        70 C~~~~~~~~~~~~~~~l~v~~~   91 (124)
                      |.+.+...........|.|...
T Consensus        90 C~~~~~~~~~fg~gt~L~V~~~  111 (120)
T 1oaq_L           90 CALWYSNHLVFGGGTKLTVLGQ  111 (120)
T ss_dssp             EEEEETTEEEECCCEEEEECC-
T ss_pred             EEEccCCCcEECCCEEEEEcCC
Confidence            9998764333344557776554

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.65  E-value=2.8e-07  Score=59.74  Aligned_cols=87  Identities=22%  Similarity=0.381  Sum_probs=52.4

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEeec--c----------CCCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVET--S----------KSDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~~--~----------~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|+|+  +..+..  .          ......+..... .........|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   90 (344)
T 1za6_B           11 VVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSED   90 (344)
T ss_dssp             EECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCccc
Confidence            467899999999998763  678999986  332210  0          000011121111 11111234568889999


Q ss_pred             CeEEEEEeEeCCccceeeeEEEEEE
Q psy8666          65 GGVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      .|.|.|.+.|..+.. .....|.|.
T Consensus        91 ~G~Y~C~~~n~~~~~-~~~~~l~V~  114 (344)
T 1za6_B           91 TAVYFCTRSLNMAYW-GQGTLVTVS  114 (344)
T ss_dssp             CEEEEEEETTTTCEE-CCCEEEEEC
T ss_pred             CEEEEEEEecCccee-cCcEEEEEe
Confidence            999999999854332 345667765

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.64  E-value=3.6e-07  Score=56.76  Aligned_cols=73  Identities=21%  Similarity=0.347  Sum_probs=45.2

Q ss_pred             EecCCCEEEEEeeeccC--CCeEEEEeC--CEEeecc--CCC----------CCceEEEc-cCCcEEEEEEEcCCCccCC
Q psy8666           3 VAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVETS--KSD----------AKSQRVIL-PTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~~~--~~~----------~~~~~~~~-~~~~~~~~~~i~~~~~~d~   65 (124)
                      +.+|+.+.|.|.+.+.+  .+.+.|+|+  +..+...  ...          ...+.... ..........|.+++.+|.
T Consensus       146 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds  225 (256)
T 3ux9_B          146 VQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDT  225 (256)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhC
Confidence            56799999999998766  788999986  3322100  000          00111111 1111122345688899999


Q ss_pred             eEEEEEeEeC
Q psy8666          66 GVYWCLARNS   75 (124)
Q Consensus        66 g~y~C~~~~~   75 (124)
                      |.|.|.+.|.
T Consensus       226 G~Y~C~~~~~  235 (256)
T 3ux9_B          226 AVYYCARYID  235 (256)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEEEcC
Confidence            9999999985

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.64  E-value=1.3e-06  Score=54.38  Aligned_cols=89  Identities=21%  Similarity=0.359  Sum_probs=51.3

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEeecc--C----------CCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVETS--K----------SDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~~~--~----------~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|.+.+.+  .+.+.|||.  +..+...  .          .....+..... .........|.+++.+|
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   92 (256)
T 3umt_A           13 LVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSED   92 (256)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCccc
Confidence            467899999999998765  678999973  2211100  0          00001111111 11112224568889999


Q ss_pred             CeEEEEEeEeCCc---cceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSVG---TAVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~~---~~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+..+   ........|.|..
T Consensus        93 sG~Y~C~~~~~~~~~~~~~~~~~~L~V~~  121 (256)
T 3umt_A           93 SAVYYCARDDRYPAWFAYWGQGTTVTVSS  121 (256)
T ss_dssp             CEEEEEEECCSTTCCSCEECCCEEEEECC
T ss_pred             CEEEEEEEccCCCccccEECCCEEEEEcC
Confidence            9999999998721   1123455666653

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.64  E-value=4.1e-07  Score=49.97  Aligned_cols=86  Identities=16%  Similarity=0.316  Sum_probs=49.2

Q ss_pred             EEecCCCEEEEEeeeccC-----CCeEEEEeCC--EE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-----EPTIEWYKDG--EL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-----~p~v~w~k~g--~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+.+.|.|...+.+     .+.+.|||..  ..   +... .   .....+........ .....|.+++.+|.|.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~-~~~L~I~~v~~~DsG~   90 (113)
T 1dlf_L           12 PVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGT-DFTLKISRVEAEDLGV   90 (113)
T ss_dssp             EECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEECSCCGGGCEE
T ss_pred             EEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCC-EEEEEECCCChHHCEE
Confidence            567899999999987655     4679999843  21   1100 0   00011111111112 2234568889999999


Q ss_pred             EEEEeEeCCccceeeeEEEEE
Q psy8666          68 YWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      |.|.+.+...........|.|
T Consensus        91 Y~C~~~~~~~~~fg~gT~l~V  111 (113)
T 1dlf_L           91 YFCSQSTHVPFTFGSGTKLEI  111 (113)
T ss_dssp             EEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEEecCCCcEECCCEEEEE
Confidence            999988753222233444443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.64  E-value=3.3e-08  Score=59.72  Aligned_cols=73  Identities=12%  Similarity=0.168  Sum_probs=45.8

Q ss_pred             cCCCEEEEEeeec-cCCC-eEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           5 KNEPVTLNCKAEG-KPEP-TIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         5 ~G~~~~l~C~~~~-~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .|+.+.|.|.+.+ .|.+ .+.|+|+|..+..... .........++.  ......|..++..|.|.|.|.+.|....
T Consensus       126 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          126 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL-NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE-EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee-ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence            4778999999987 5665 7999999988763200 000000011111  1223345566789999999999997654

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.64  E-value=5e-07  Score=60.06  Aligned_cols=88  Identities=18%  Similarity=0.336  Sum_probs=52.3

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEeeccC--C----------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVETSK--S----------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~~~~--~----------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.|  .+.+.|+|+  +..+....  .          .......... .........|..++.+|
T Consensus       229 ~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  308 (438)
T 1qgc_4          229 LVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSAD  308 (438)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhh
Confidence            356899999999999888  678999986  54332100  0          0001111111 11112234567889999


Q ss_pred             CeEEEEEeEeCCcc----ceeeeEEEEEE
Q psy8666          65 GGVYWCLARNSVGT----AVSRNATLQVA   89 (124)
Q Consensus        65 ~g~y~C~~~~~~~~----~~~~~~~l~v~   89 (124)
                      .|.|.|.+.|..+.    .......+.|.
T Consensus       309 ~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~  337 (438)
T 1qgc_4          309 TAMYYCVRREDGGDEGFAYWGQGTVVTVS  337 (438)
T ss_dssp             CCEEEEEECCSSSCCCCCSBCCCEEEEEC
T ss_pred             CEEEEEEEEccCCCccceeeCCCEEEEEe
Confidence            99999999984431    11234566665

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.64  E-value=6.1e-08  Score=57.35  Aligned_cols=74  Identities=19%  Similarity=0.329  Sum_probs=47.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeecc--C-------CCCCceEEEc----cCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETS--K-------SDAKSQRVIL----PTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~--~-------~~~~~~~~~~----~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+..|+.+.|.|.+.+.|.+.+.|+|++......  .       .....+....    ..+.  ....|.+++..|.|.|
T Consensus         6 ~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN--FPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTB--CCEEECSCCGGGCEEE
T ss_pred             EEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCe--EEEEEecCCHHHCEEE
Confidence            5788999999999988899999999987532110  0       0000111111    1111  1124567799999999


Q ss_pred             EEEeEeCCc
Q psy8666          69 WCLARNSVG   77 (124)
Q Consensus        69 ~C~~~~~~~   77 (124)
                      .|.+.+..+
T Consensus        84 ~C~~~~~~~   92 (184)
T 2ny1_B           84 ICEVEDQKE   92 (184)
T ss_dssp             EEEETTEEE
T ss_pred             EEEEEcCCC
Confidence            999988643

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.64  E-value=8e-08  Score=54.25  Aligned_cols=74  Identities=20%  Similarity=0.299  Sum_probs=44.1

Q ss_pred             EEecCCCEEEEEeeec---cCCCeEEEEeCCEEe-----eccC--CC----------------CC--ceEEEccCCcEEE
Q psy8666           2 VVAKNEPVTLNCKAEG---KPEPTIEWYKDGELV-----ETSK--SD----------------AK--SQRVILPTGSLFF   53 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~---~p~p~v~w~k~g~~~-----~~~~--~~----------------~~--~~~~~~~~~~~~~   53 (124)
                      .+..|+++.|.|....   .+.+.+.|+|+....     ....  ..                ..  .+......+.  .
T Consensus        15 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~   92 (135)
T 1xt5_A           15 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAA--P   92 (135)
T ss_dssp             EEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESCTTS--C
T ss_pred             EEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEecCCC--C
Confidence            4678999999999753   567889999864321     1000  00                00  1111111100  1


Q ss_pred             EEEEcCCCccCCeEEEEEeEeCCc
Q psy8666          54 LRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus        54 ~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      ...|.+++.+|.|.|.|.+.+...
T Consensus        93 sL~I~~v~~~D~G~Y~C~v~~~~~  116 (135)
T 1xt5_A           93 TLRLTHVHPQDGGRYWCQVAQWSI  116 (135)
T ss_dssp             CEEECSCCGGGCEEEEEEEECSSC
T ss_pred             eEEECCCChhhCcEEEEEEEcCCc
Confidence            234677799999999999998643

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.64  E-value=5e-08  Score=59.10  Aligned_cols=55  Identities=22%  Similarity=0.465  Sum_probs=41.2

Q ss_pred             ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      ..|+.+.|.|.+   |.|.+.|+|+|..+...         ......+.+.    .++..|.|.|.|.+.+
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~---------~~~~~~L~i~----~v~~~DsG~Y~C~~~~   70 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFKDGKMIGFL---------TEDKKKWNLG----SNAKDPRGMYQCKGSQ   70 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEEEEE---------ESSCCCEEEE----EGGGCCEEEEEEESSS
T ss_pred             cCCCeEEEEEcC---CCCEEEEEECCEECCCC---------CCCCCeEEeC----CCCcCCCEEEEEEecC
Confidence            578999999988   78899999999877531         1123445433    4489999999999655

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.63  E-value=3.8e-07  Score=49.97  Aligned_cols=73  Identities=26%  Similarity=0.495  Sum_probs=45.6

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeC--CEE---eec-c--CCC------C-CceEEEccCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKD--GEL---VET-S--KSD------A-KSQRVILPTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~--g~~---~~~-~--~~~------~-~~~~~~~~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+.+|+.+.|.|... +.+.+.+.|||.  +..   +.. .  ...      . ..+........ .....|.+++.+|.
T Consensus        10 ~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~L~I~~~~~~Ds   88 (111)
T 2qhl_A           10 TVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQ-KFDLNIIGTREDDG   88 (111)
T ss_dssp             ECCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSS-BEEEEESSCCGGGC
T ss_pred             EEeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcCC-eEEEEECCCChhHC
Confidence            467899999999987 666778999984  221   110 0  000      0 12222222222 23345788899999


Q ss_pred             eEEEEEeEeC
Q psy8666          66 GVYWCLARNS   75 (124)
Q Consensus        66 g~y~C~~~~~   75 (124)
                      |.|.|.+.+.
T Consensus        89 G~Y~C~~~~~   98 (111)
T 2qhl_A           89 GEYFCGEVEG   98 (111)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEEccC
Confidence            9999998874

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.63  E-value=1.8e-07  Score=57.95  Aligned_cols=73  Identities=21%  Similarity=0.335  Sum_probs=44.9

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEeeccC--C----------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVETSK--S----------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~~~~--~----------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|.+.+.+  .+.+.|+|+  +..+....  .          ....+..... .........|.+++.+|
T Consensus       142 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  221 (250)
T 3esu_F          142 LVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVD  221 (250)
T ss_dssp             EECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCccc
Confidence            356899999999998766  788999987  43321100  0          0001111111 11111234568889999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .|.|.|.+.+
T Consensus       222 sG~Y~C~~~~  231 (250)
T 3esu_F          222 SAVYFCARSG  231 (250)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            9999999997

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.63  E-value=3.3e-06  Score=53.38  Aligned_cols=90  Identities=20%  Similarity=0.332  Sum_probs=52.8

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEee--ccCC----------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVE--TSKS----------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~--~~~~----------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|.+.+.+  .+.+.|+|++  ..+.  ....          ....+..... .........|.+++.+|
T Consensus        37 ~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D  116 (282)
T 1qok_A           37 LVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSED  116 (282)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChhh
Confidence            467899999999998765  5789999853  2111  0000          0001111111 11112234568889999


Q ss_pred             CeEEEEEeEeCCcc----ceeeeEEEEEEee
Q psy8666          65 GGVYWCLARNSVGT----AVSRNATLQVAVV   91 (124)
Q Consensus        65 ~g~y~C~~~~~~~~----~~~~~~~l~v~~~   91 (124)
                      .|.|.|.+.|..|.    .....+.|.|...
T Consensus       117 sG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~  147 (282)
T 1qok_A          117 TAVYYCNEGTPTGPYYFDYWGQGTTVTVSSG  147 (282)
T ss_dssp             CEEEEEEEECSSSSCCCEEECCCEEEEEEC-
T ss_pred             CEEEEEEeccCCCccceeeeCCCEEEEEecC
Confidence            99999999998651    1223456676654

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.62  E-value=3e-07  Score=54.61  Aligned_cols=84  Identities=15%  Similarity=0.175  Sum_probs=52.9

Q ss_pred             EEecCCCEEEEEeeec-cCCCeEEEEeC-CEEeeccC---------CCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEPTIEWYKD-GELVETSK---------SDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~-g~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|...+ .+.+.+.|+|. +..+....         .....+..+ ..++++    .|.+++.+|.|.|.
T Consensus        10 ~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL----~I~~v~~~D~G~Y~   85 (180)
T 2dru_A           10 NAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGAL----RIYNVSKEDRGDYY   85 (180)
T ss_dssp             EEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCE----EECSCCGGGCEEEE
T ss_pred             EEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccE----EEcCCCHHHCeEEE
Confidence            5678999999998744 34688999994 33222100         000012222 234444    35667999999999


Q ss_pred             EEeEeCCccceeeeEEEEEEee
Q psy8666          70 CLARNSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        70 C~~~~~~~~~~~~~~~l~v~~~   91 (124)
                      |.+.+.. .. ...+.|.|..+
T Consensus        86 C~v~~~~-~~-~~~~~L~V~~~  105 (180)
T 2dru_A           86 MRMLHET-ED-QWKITMEVYEM  105 (180)
T ss_dssp             EEEESSS-EE-EEEEEEEEECC
T ss_pred             EEEEcCC-eE-EEEEEEEEECC
Confidence            9987765 33 55677777654

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.62  E-value=4.3e-08  Score=59.18  Aligned_cols=73  Identities=14%  Similarity=0.157  Sum_probs=46.1

Q ss_pred             cCCCEEEEEeeecc--CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEE--EEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           5 KNEPVTLNCKAEGK--PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLF--FLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         5 ~G~~~~l~C~~~~~--p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .|+.+.|.|.+.+.  |.+.+.|+|+|..+.....  .........+...  ....+...+..|.|.|.|.+.|..+..
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~--~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~  201 (211)
T 3tv3_L          125 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVE--TTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  201 (211)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEE--ECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEE
T ss_pred             cCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcc--cCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCE
Confidence            48999999999875  3578999999988753100  0011111222221  223344445678999999999987554

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.62  E-value=7.6e-07  Score=55.49  Aligned_cols=76  Identities=22%  Similarity=0.343  Sum_probs=46.5

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEeec---cC--------CCCCceEEEccC-CcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVET---SK--------SDAKSQRVILPT-GSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~~---~~--------~~~~~~~~~~~~-~~~~~~~~i~~~~~~d~   65 (124)
                      .+.+|+.+.|.|.+.+.|  .+.+.|+|+  +..+..   ..        .....+...... ........|.+++.+|.
T Consensus        11 ~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   90 (257)
T 1f3r_B           11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (257)
T ss_dssp             EECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTCC
T ss_pred             cccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcccC
Confidence            567899999999998875  688999985  221110   00        000111111111 11112345677899999


Q ss_pred             eEEEEEeEeCCc
Q psy8666          66 GVYWCLARNSVG   77 (124)
Q Consensus        66 g~y~C~~~~~~~   77 (124)
                      |.|.|.+.|..|
T Consensus        91 G~Y~C~a~n~~g  102 (257)
T 1f3r_B           91 GTYYCTRDLYGG  102 (257)
T ss_dssp             EEEEEEEESSSS
T ss_pred             EEEEEEEccccc
Confidence            999999999753

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.62  E-value=1e-06  Score=53.50  Aligned_cols=88  Identities=19%  Similarity=0.369  Sum_probs=51.5

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EE---ee-ccC--CC--------CCceEEEccC-CcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--EL---VE-TSK--SD--------AKSQRVILPT-GSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~---~~-~~~--~~--------~~~~~~~~~~-~~~~~~~~i~~~~~   62 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|+|++  ..   +. ...  ..        ...+...... ........|.+++.
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   90 (220)
T 1pz5_B           11 LVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRA   90 (220)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCH
Confidence            467899999999998766  6889999853  21   10 000  00        0011111110 11112345678899


Q ss_pred             cCCeEEEEEeEeCCcc--ceeeeEEEEEE
Q psy8666          63 QDGGVYWCLARNSVGT--AVSRNATLQVA   89 (124)
Q Consensus        63 ~d~g~y~C~~~~~~~~--~~~~~~~l~v~   89 (124)
                      +|.|.|.|.+.+..+.  .......|.|.
T Consensus        91 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~  119 (220)
T 1pz5_B           91 EDTGIYYCTRGGAVGAMDYWGQGTSVTVS  119 (220)
T ss_dssp             GGCEEEEEEEECTTSSEEEECCCEEEEEC
T ss_pred             HHCEEEEEEEecCCcccceECCCEEEEEc
Confidence            9999999999987532  11234566665

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.61  E-value=8.3e-07  Score=48.90  Aligned_cols=88  Identities=11%  Similarity=0.171  Sum_probs=50.2

Q ss_pred             EEecCCCEEEEEeeecc---CCCeEEEEeCC--E---Eeec-c-------CCCCCceEEEccC-CcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGK---PEPTIEWYKDG--E---LVET-S-------KSDAKSQRVILPT-GSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~---p~p~v~w~k~g--~---~~~~-~-------~~~~~~~~~~~~~-~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|.....   +...+.|||..  .   .+.. .       ......+...... ........|.+++.+|
T Consensus         9 ~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   88 (116)
T 3bj9_1            9 SSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPED   88 (116)
T ss_dssp             EEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCCChhH
Confidence            57789999999998643   45679999843  1   1110 0       0000111111111 1112345578889999


Q ss_pred             CeEEEEEeEeCCccceeeeEEEEEE
Q psy8666          65 GGVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      .|.|.|.+.+...........|.|.
T Consensus        89 sG~Y~C~~~~~~~~~fg~gT~L~V~  113 (116)
T 3bj9_1           89 EAMYYCAMGARSTHVFGSGTQLTVL  113 (116)
T ss_dssp             CEEEEEEECCSSCCEECCCEEEEEE
T ss_pred             CEEEEEEEeCCCCcEECCCEEEEEe
Confidence            9999999887543333344555554

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.61  E-value=1.1e-06  Score=47.89  Aligned_cols=84  Identities=14%  Similarity=0.111  Sum_probs=51.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC-ccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV-GTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~-~~~~   80 (124)
                      .+..|++++|.|.... ....+.|+|+|.......    ................|..++..|.|.|+|...+.. .+..
T Consensus        19 vv~~G~~VtL~C~~~~-~~~~f~l~k~g~~~~~~~----~~~~~~~~~~~~~~f~i~~vt~~~aG~Y~C~~~~~~~~S~~   93 (106)
T 3kgr_A           19 VIPLGSHVTFVCRGPV-GVQTFRLERESRSTYNDT----EDVSQASPSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQ   93 (106)
T ss_dssp             EEETTCCEEEEEEECT-TCCEEEEEEGGGTEEEEE----CCCEEEETTEEEEEEEESSCCGGGCEEEEEEEEETTEECCC
T ss_pred             ccCCCCeEEEEEEccC-CCcEEEEEECCCcccccc----ccccccCCCCcceEEEecCCCcCCCceEEEEeeCCCcccCC
Confidence            3668999999998754 335688999986542100    000001111222333457779999999999988754 3344


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus        94 Sdpl~L~Vtg  103 (106)
T 3kgr_A           94 SDYLELLVKE  103 (106)
T ss_dssp             CCCEEEEEEC
T ss_pred             CCCEEEEEeC
Confidence            6677777654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.61  E-value=4e-07  Score=54.99  Aligned_cols=72  Identities=22%  Similarity=0.288  Sum_probs=45.6

Q ss_pred             ecCCCEEEEEeeeccCC----CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCC
Q psy8666           4 AKNEPVTLNCKAEGKPE----PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSV   76 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~----p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~   76 (124)
                      ..|+.+.|.|.+.+.++    +.+.|+|++..+....   .........+.+.+... ..+...|   .|.|.|.+.|..
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~---~~~~~~~~~g~~~~~~~-l~i~~~d~~d~g~Y~C~a~n~~   91 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK---TKPREEQYNSTYRVVSV-LTVLHQDWLNGKEYKCKVSNKA   91 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCE---ECCCEECTTSCEEEEEE-EECCHHHHHTTCCEEEEEECTT
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcc---cCCceeccCCcEEEEEE-EEEEHHHccCCceEEEEEEcCc
Confidence            47999999999988753    4899999998765321   01111223344333222 1124445   999999999987


Q ss_pred             ccc
Q psy8666          77 GTA   79 (124)
Q Consensus        77 ~~~   79 (124)
                      +..
T Consensus        92 ~~~   94 (207)
T 1l6x_A           92 LPA   94 (207)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            653

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.60  E-value=3.5e-07  Score=51.19  Aligned_cols=27  Identities=15%  Similarity=0.208  Sum_probs=22.0

Q ss_pred             EEecCCCEEEEEeeeccCCC----eEEEEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP----TIEWYKD   28 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p----~v~w~k~   28 (124)
                      .+..|+.+.|.|.....+.+    .+.|+|.
T Consensus        13 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~   43 (128)
T 3r0n_A           13 RGQLGGTVELPCHLLPPVPGLYISLVTWQRP   43 (128)
T ss_dssp             ECCTTSCEEECCEEESCCTTCEEEEEEEECT
T ss_pred             EEEcCCCEEEEEEeecCCCCCcEEEEEEEEe
Confidence            45679999999998876655    7899996

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.60  E-value=3e-06  Score=45.87  Aligned_cols=76  Identities=17%  Similarity=0.165  Sum_probs=48.6

Q ss_pred             EecCCCEEEEEeeeccCC----CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc-
Q psy8666           3 VAKNEPVTLNCKAEGKPE----PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG-   77 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~----p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~-   77 (124)
                      +..|++++|.| .. ...    -.+.|+|+|......         ............|..++..|.|.|+|...+..+ 
T Consensus        20 v~~G~~VTL~C-~~-~~~~~~~~~f~l~k~g~~~~~~---------~~~~~~~~a~f~i~~vt~~~aG~Y~C~~~~~~~~   88 (102)
T 4esk_A           20 ISQGTFVTVVC-SY-SDKHDLYNMVRLEKDGSTFMEK---------STEPYKTEDEFEIGPVNETITGHYSCIYSKGITW   88 (102)
T ss_dssp             EETTCCEEEEE-EC-TTTGGGCCEEEEEETTEEEEEE---------ECCSSCSEEEEEECSCCGGGCEEEEEEEEETTTE
T ss_pred             ccCCCcEEEEE-CC-CcCCCcccEEEEEECCcccccc---------ccCCCCcceEEEeCcCCcccCeeEEEEEeCCCcc
Confidence            56799999999 63 233    467899999754310         111111122334567799999999999887654 


Q ss_pred             cceeeeEEEEEE
Q psy8666          78 TAVSRNATLQVA   89 (124)
Q Consensus        78 ~~~~~~~~l~v~   89 (124)
                      +..+..+.|.|.
T Consensus        89 S~~Sdpl~L~Vt  100 (102)
T 4esk_A           89 SERSKTLELKVI  100 (102)
T ss_dssp             EEECCCEEEEEE
T ss_pred             ccCcCCEEEEEE
Confidence            334666666654

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.60  E-value=3.5e-07  Score=55.19  Aligned_cols=90  Identities=17%  Similarity=0.284  Sum_probs=53.1

Q ss_pred             EEecCCCEEEEEeeecc-------CCCeEEEEeCCEEe------eccC------CCCCceEEEccCC-cEEEEEEEcCCC
Q psy8666           2 VVAKNEPVTLNCKAEGK-------PEPTIEWYKDGELV------ETSK------SDAKSQRVILPTG-SLFFLRVVHGKK   61 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-------p~p~v~w~k~g~~~------~~~~------~~~~~~~~~~~~~-~~~~~~~i~~~~   61 (124)
                      .+..|+.+.|.|.+.+.       +.+.+.|+|++...      ....      .....+.....+. .......|.+++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   90 (214)
T 2zg1_A           11 TVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDAR   90 (214)
T ss_dssp             EEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred             EEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCC
Confidence            56789999999998753       46789999986531      1000      0001122222110 000113457779


Q ss_pred             ccCCeEEEEEeEeCCccce---eeeEEEEEEee
Q psy8666          62 EQDGGVYWCLARNSVGTAV---SRNATLQVAVV   91 (124)
Q Consensus        62 ~~d~g~y~C~~~~~~~~~~---~~~~~l~v~~~   91 (124)
                      .+|.|.|.|.+.+..+...   +..+.|.|..+
T Consensus        91 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~  123 (214)
T 2zg1_A           91 MEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL  123 (214)
T ss_dssp             GGGCEEEEEEEEETTTEEEECCSSCEEEEEECC
T ss_pred             HhhCceEEEEEEcCCCceeeecCCceEEEEecC
Confidence            9999999999998753221   24667777664

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.60  E-value=9.1e-08  Score=57.93  Aligned_cols=72  Identities=14%  Similarity=0.266  Sum_probs=41.9

Q ss_pred             cCCCEEEEEeeec-cCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEE--EEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           5 KNEPVTLNCKAEG-KPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLF--FLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         5 ~G~~~~l~C~~~~-~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .|+.+.|.|.+.+ .|.| .+.|+|+|..+.....   ........+...  ....+...+..|.|.|.|.+.|..+..
T Consensus       135 ~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~---~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~  210 (218)
T 3s96_B          135 KENKATLVCLISNFSPSGVTVAWKANGTPITQGVD---TSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTV  210 (218)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEEC-----------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEE
T ss_pred             cCCcEEEEEEECcccCCCeEEEEEECCEECcCcee---cCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcc
Confidence            3677999999987 5667 8999999988763210   000011122222  112233335567999999999987654

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.58  E-value=1.7e-06  Score=54.10  Aligned_cols=88  Identities=18%  Similarity=0.229  Sum_probs=50.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe--CCEEeec---c-------CCCCC-ceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK--DGELVET---S-------KSDAK-SQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k--~g~~~~~---~-------~~~~~-~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+..|+.+.|.|.+. .+.+.+.|||  .+.....   .       ..... .+..............|.+++.+|.|.|
T Consensus        37 ~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y  115 (268)
T 3pl6_D           37 VTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVY  115 (268)
T ss_dssp             EEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCEEE
T ss_pred             EecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCEEE
Confidence            467899999999986 5778999998  2221100   0       00000 1111221111112345678899999999


Q ss_pred             EEEeEeC-CccceeeeEEEEEEe
Q psy8666          69 WCLARNS-VGTAVSRNATLQVAV   90 (124)
Q Consensus        69 ~C~~~~~-~~~~~~~~~~l~v~~   90 (124)
                      .|.+.+. ..........|.|..
T Consensus       116 ~C~~~~~~~~~~~~~~~~l~V~~  138 (268)
T 3pl6_D          116 LCATSALGDTQYFGPGTRLTVLE  138 (268)
T ss_dssp             EEEEESSSSSCEECCCEEEEEES
T ss_pred             EEEEecCCCceeeCCcEEEEEec
Confidence            9999974 112223445666654

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.58  E-value=1.3e-06  Score=52.64  Aligned_cols=86  Identities=19%  Similarity=0.317  Sum_probs=50.2

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEee--ccCCC---------CCceEEEcc-CCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVE--TSKSD---------AKSQRVILP-TGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~--~~~~~---------~~~~~~~~~-~~~~~~~~~i~~~~~~d~   65 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|+|+  +....  .....         ...+..... .........|.+++.+|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~   90 (210)
T 3d9a_H           11 LVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDT   90 (210)
T ss_dssp             EECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             EecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcccC
Confidence            577899999999998765  478999985  32211  00000         001111111 011112345688899999


Q ss_pred             eEEEEEeEeCCccceeeeEEEEEE
Q psy8666          66 GVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        66 g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      |.|.|.+.+....  .....|.|.
T Consensus        91 G~Y~C~~~~~~~~--~~~~~l~V~  112 (210)
T 3d9a_H           91 ATYYCANWDGDYW--GQGTLVTVS  112 (210)
T ss_dssp             EEEEEEETTSSCB--CCCEEEEEC
T ss_pred             EEEEEEEecCccc--ccceEEEec
Confidence            9999999986411  233556654

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.58  E-value=7.5e-07  Score=63.07  Aligned_cols=92  Identities=17%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             EEecCCCEEEEEeeec--cCCCeEEEEeCCEEeeccCCCCCceEEEc---cCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEG--KPEPTIEWYKDGELVETSKSDAKSQRVIL---PTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~--~p~p~v~w~k~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+..|+.+.|.|.+.+  .+.+.+.|++++..+....... ......   ..........|..++..|.|.|.|.+.|..
T Consensus       235 ~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~  313 (772)
T 3v2a_R          235 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVN-RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL  313 (772)
T ss_dssp             EEETTCCEEEEEEEEECTTCCCEEEEECC--------CEE-EEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSS
T ss_pred             EEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeee-ccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCC
Confidence            4678999999999987  4456799999987654210000 000000   111122344567889999999999999988


Q ss_pred             ccceeeeEEEEEEeeeeee
Q psy8666          77 GTAVSRNATLQVAVVIFFI   95 (124)
Q Consensus        77 ~~~~~~~~~l~v~~~~~~~   95 (124)
                      +.. +..+.|.|..+|.+.
T Consensus       314 ~~~-~~~~~l~V~~~p~~~  331 (772)
T 3v2a_R          314 MTK-KNSTFVRVHEKPFVA  331 (772)
T ss_dssp             CEE-EEEEEEEEECCCC--
T ss_pred             cce-eEEEEEEEeCCCeeE
Confidence            765 567888887766543

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.58  E-value=8.6e-07  Score=55.94  Aligned_cols=74  Identities=18%  Similarity=0.311  Sum_probs=46.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EEee----ccC-----C---CCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--ELVE----TSK-----S---DAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~~~----~~~-----~---~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+.+.|.|.+.+.+.+.+.|+|+.  ....    ...     .   ....+..............|.+++.+|.|.
T Consensus        35 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~  114 (279)
T 2wbj_D           35 ISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSF  114 (279)
T ss_dssp             EEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGCEE
T ss_pred             EecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCCEE
Confidence            4678999999999987788899999853  1110    000     0   001122222111112234568889999999


Q ss_pred             EEEEeEeC
Q psy8666          68 YWCLARNS   75 (124)
Q Consensus        68 y~C~~~~~   75 (124)
                      |.|.+.+.
T Consensus       115 Y~C~~~~~  122 (279)
T 2wbj_D          115 YICSARDL  122 (279)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEccc
Confidence            99999984

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.58  E-value=1.1e-08  Score=61.84  Aligned_cols=73  Identities=12%  Similarity=0.173  Sum_probs=45.5

Q ss_pred             cCCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCC-cEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           5 KNEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTG-SLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .|+.+.|.|.+.+. |. |.+.|+|+|..+.......  .......+ .......|..++.+|.|.|.|.+.|..+..
T Consensus       127 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~--~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          127 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT--KPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC--CCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             cCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC--CceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            47889999999887 54 7999999998876321100  00000111 001112234447789999999999986553

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.00  E-value=6.2e-09  Score=57.16  Aligned_cols=74  Identities=18%  Similarity=0.245  Sum_probs=44.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCE--Eeec----cC---CCCCceEEEccC-CcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGE--LVET----SK---SDAKSQRVILPT-GSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~--~~~~----~~---~~~~~~~~~~~~-~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.+.|.|...+.+.+.+.|+|+..  .+..    ..   .....+...... ........|.+++.+|.|.|.|.
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   89 (110)
T 1u3h_A           10 TVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCA   89 (110)
Confidence            46789999999998877778899998642  1110    00   000111111110 11112234566699999999999


Q ss_pred             eEeC
Q psy8666          72 ARNS   75 (124)
Q Consensus        72 ~~~~   75 (124)
                      +.+.
T Consensus        90 ~~~~   93 (110)
T 1u3h_A           90 ASAN   93 (110)
Confidence            8874

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.58  E-value=5.1e-07  Score=57.09  Aligned_cols=75  Identities=16%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             CEEecCCCEEEEEeeecc--CCCeEEEEeCC--EEee---ccC-C--------CCCceEEEcc-CCcEEEEEEEcCCCcc
Q psy8666           1 MVVAKNEPVTLNCKAEGK--PEPTIEWYKDG--ELVE---TSK-S--------DAKSQRVILP-TGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~--p~p~v~w~k~g--~~~~---~~~-~--------~~~~~~~~~~-~~~~~~~~~i~~~~~~   63 (124)
                      +.+.+|+.+.|.|.+.+.  +.+.+.|||..  ....   ... .        ....+..... .........|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (280)
T 3fku_X           10 EVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSE   89 (280)
T ss_dssp             CEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCST
T ss_pred             EEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            457889999999998765  56789999742  1110   000 0        0001111110 1111233456888999


Q ss_pred             CCeEEEEEeEeC
Q psy8666          64 DGGVYWCLARNS   75 (124)
Q Consensus        64 d~g~y~C~~~~~   75 (124)
                      |.|.|.|.+.+.
T Consensus        90 DsG~Y~C~~~~~  101 (280)
T 3fku_X           90 DTAVYYCARSPS  101 (280)
T ss_dssp             TCEECCEEECSS
T ss_pred             hCEEEEEEEecC
Confidence            999999999886

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.58  E-value=5.2e-08  Score=59.69  Aligned_cols=73  Identities=15%  Similarity=0.169  Sum_probs=45.0

Q ss_pred             cCCCEEEEEeeeccC-C-CeEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           5 KNEPVTLNCKAEGKP-E-PTIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p-~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .|+.+.|.|.+.+.+ . +.+.|+|+|..+......  .......++.  ......|...+..|.|.|.|.+.|.....
T Consensus       149 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  225 (234)
T 2j6e_L          149 QANKATLVCLISDFFPGAVTVAWKADGAPVKAGVET--TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  225 (234)
T ss_dssp             TTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEE--CCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred             cCCceEEEEEEEEEcCCceEEEEEECCEECCCCccc--cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence            477899999998754 3 389999999877532000  0000001111  11223345557788999999999986553

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.57  E-value=8.3e-08  Score=58.07  Aligned_cols=74  Identities=12%  Similarity=0.140  Sum_probs=47.3

Q ss_pred             EecCCCEEEEEeeeccC---C-CeEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           3 VAKNEPVTLNCKAEGKP---E-PTIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p---~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +..|+.+.|.|.+.+.+   . +.+.|+|++..+.....   ........+.  ......|..++..|.|.|.|.+.+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~   91 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQT---KPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAA   91 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEE---ECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCcccccccc---CCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccC
Confidence            45799999999998874   2 48999999976542100   0000011111  11233456667899999999999987


Q ss_pred             ccc
Q psy8666          77 GTA   79 (124)
Q Consensus        77 ~~~   79 (124)
                      +..
T Consensus        92 ~~~   94 (207)
T 2vol_A           92 FPA   94 (207)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            753

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.57  E-value=7.1e-08  Score=58.24  Aligned_cols=73  Identities=10%  Similarity=0.150  Sum_probs=44.8

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .|+.+.|.|.+.+. |.+ .+.|+|+|..+..... .........++.  ......|..++..|.|.|.|.+.|....
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          125 ATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVL-DSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEE-EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCce-EccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            47889999999874 554 7999999987653200 000000011222  1122344555778999999999997643

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.56  E-value=3.5e-06  Score=46.84  Aligned_cols=79  Identities=16%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             EEecCCCEEEEEeeeccCC----CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE----PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~----p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .+..|++++|.| .. ...    -.+.|+|+|......         ............|..++..|.|.|+|...+..+
T Consensus        19 vV~~G~~VTL~C-~~-~~~~~~~~~f~L~k~g~~~~~~---------~~~~~~~~a~f~i~~vt~~daG~Y~C~y~~~~~   87 (118)
T 4ety_A           19 MISQGTFVTVVC-SY-SDKHDLYNMVRLEKDGSTFMEK---------STEPYKTEDEFEIGPVNETITGHYSCIYSKGIT   87 (118)
T ss_dssp             EEETTCCEEEEE-EC-TTTGGGCCEEEEEETTEEEEEE---------ECCSSSSEEEEEECSCCGGGCEEEEEEEEC---
T ss_pred             cccCCCcEEEEE-CC-CCCCcccCEEEEEECCcCcccc---------ccCCCCcceEEEeCccCccCCeEEEEEeeCCCc
Confidence            356899999999 53 233    467899999754310         111111122334567799999999999877654


Q ss_pred             -cceeeeEEEEEEee
Q psy8666          78 -TAVSRNATLQVAVV   91 (124)
Q Consensus        78 -~~~~~~~~l~v~~~   91 (124)
                       +..+..+.|.|...
T Consensus        88 wS~~Sdpl~L~Vtg~  102 (118)
T 4ety_A           88 WSERSKTLELKVIKE  102 (118)
T ss_dssp             -CEECCCEEEEEECC
T ss_pred             cccccCCEEEEEEEe
Confidence             33467778877664

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.56  E-value=1.5e-07  Score=52.60  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=47.5

Q ss_pred             EEecCCCEEEEEeeeccCC---CeEEEEeCCEEe-----e--ccCCCC------CceEEEccC--CcEEEEEEEcCCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE---PTIEWYKDGELV-----E--TSKSDA------KSQRVILPT--GSLFFLRVVHGKKEQ   63 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~---p~v~w~k~g~~~-----~--~~~~~~------~~~~~~~~~--~~~~~~~~i~~~~~~   63 (124)
                      .+..|+++.|.|...+.+.   ..+.|+|.....     .  ......      ..+......  ........|.+++.+
T Consensus        11 tv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   90 (123)
T 4gjt_B           11 TVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQA   90 (123)
T ss_dssp             ECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCCSS
T ss_pred             EEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCChH
Confidence            5678999999999876543   347899854211     0  000000      001111100  000111345677999


Q ss_pred             CCeEEEEEeEeC-CccceeeeEEEEEEe
Q psy8666          64 DGGVYWCLARNS-VGTAVSRNATLQVAV   90 (124)
Q Consensus        64 d~g~y~C~~~~~-~~~~~~~~~~l~v~~   90 (124)
                      |.|.|.|.+.+. .|.. ...+.|.|..
T Consensus        91 DsG~Y~C~v~t~~~g~~-~~~~~L~VlE  117 (123)
T 4gjt_B           91 DEGEYECRVSTFPAGSF-QARLRLRVLE  117 (123)
T ss_dssp             SCSEEEEEEEESSSCEE-EEEEEEEC--
T ss_pred             HCEEEEEEEEECCCCeE-EeEEEEEEEE
Confidence            999999988764 4443 4566666643

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.55  E-value=1.9e-06  Score=48.89  Aligned_cols=91  Identities=19%  Similarity=0.251  Sum_probs=53.5

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEeC--CEE--eec--c-C---CCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYKD--GEL--VET--S-K---SDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k~--g~~--~~~--~-~---~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|...... ...+.|||.  +..  +..  . .   .....++... ..........|.+++.+|.|.|.
T Consensus        20 ~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~   99 (134)
T 3bik_B           20 TVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYL   99 (134)
T ss_dssp             EEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCGGGCEEEE
T ss_pred             EEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCChHHCEEEE
Confidence            577899999999987543 467999984  321  110  0 0   0011222221 11222334567888999999999


Q ss_pred             EEeEeCCcc---ceeeeEEEEEEeee
Q psy8666          70 CLARNSVGT---AVSRNATLQVAVVI   92 (124)
Q Consensus        70 C~~~~~~~~---~~~~~~~l~v~~~~   92 (124)
                      |.+.+....   .....+.|.|...+
T Consensus       100 C~~~~~~~~~~~~~~~gt~L~V~~~~  125 (134)
T 3bik_B          100 CGAISLHPKAKIEESPGAELVVTERI  125 (134)
T ss_dssp             EEEEECSSSCEEEECCCEEEEEECCC
T ss_pred             EEEEeCCCCceEEEcCCEEEEEeCCC
Confidence            998875432   12345677775543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.55  E-value=5e-07  Score=56.28  Aligned_cols=83  Identities=19%  Similarity=0.347  Sum_probs=49.7

Q ss_pred             EEecCCCEEEEEeee---ccCCCeEEEEeCCEEeeccC-----C--------CCCceEEEc-----cCCcEEEEEEEcCC
Q psy8666           2 VVAKNEPVTLNCKAE---GKPEPTIEWYKDGELVETSK-----S--------DAKSQRVIL-----PTGSLFFLRVVHGK   60 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~---~~p~p~v~w~k~g~~~~~~~-----~--------~~~~~~~~~-----~~~~~~~~~~i~~~   60 (124)
                      .+.+|+.+.|.|.+.   +.+.+.+.|+|++.......     .        .........     .+..    ..|.++
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~----L~I~~v   91 (268)
T 3mj6_A           16 RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS----LLLQDV   91 (268)
T ss_dssp             EEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC----EEECSC
T ss_pred             EEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE----EEECCC
Confidence            567899999999987   66777899998543211000     0        000111110     0122    346777


Q ss_pred             CccCCeEEEEEeEeCCccc-eeeeEEEEE
Q psy8666          61 KEQDGGVYWCLARNSVGTA-VSRNATLQV   88 (124)
Q Consensus        61 ~~~d~g~y~C~~~~~~~~~-~~~~~~l~v   88 (124)
                      +.+|.|.|.|.+.+..+.. ....+.|.|
T Consensus        92 ~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V  120 (268)
T 3mj6_A           92 QKADEGIYTCEIRLKNESMVMKKPVELWV  120 (268)
T ss_dssp             CGGGCEEEEEEEEETTCCCEEEEEEEEEE
T ss_pred             CHhHCEEEEEEEEecCCcceEEEEEEEEE
Confidence            9999999999999875543 233444444

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.55  E-value=4.8e-08  Score=59.32  Aligned_cols=85  Identities=21%  Similarity=0.305  Sum_probs=50.4

Q ss_pred             CEEecCCCEEEEEeeeccCC-----CeEEEEeCCEEeeccCC--------CCCceEEEcc------CCcEEEEEEEcCCC
Q psy8666           1 MVVAKNEPVTLNCKAEGKPE-----PTIEWYKDGELVETSKS--------DAKSQRVILP------TGSLFFLRVVHGKK   61 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~-----p~v~w~k~g~~~~~~~~--------~~~~~~~~~~------~~~~~~~~~i~~~~   61 (124)
                      +.+..|+.+.|.|.+.+.|.     +.+.|++++........        ....+.....      ...+    .|.+++
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL----~I~~v~   80 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASL----RLQRVR   80 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCE----EECSCC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEE----EECCcc
Confidence            34678999999999887653     67999997643210000        0001111111      2233    456779


Q ss_pred             ccCCeEEEEEeEeCCccceeeeEEEEEEee
Q psy8666          62 EQDGGVYWCLARNSVGTAVSRNATLQVAVV   91 (124)
Q Consensus        62 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~   91 (124)
                      ..|.|.|.|.+.+.. .. +..+.|.|..+
T Consensus        81 ~~D~G~Y~C~~~~~~-~~-~~~~~l~V~~~  108 (222)
T 4i0k_A           81 VTDEGSYTCFVSIQD-FD-SAAVSLQVAAP  108 (222)
T ss_dssp             GGGCSCEEEEEEECC-CC-CCCCCCCCCBC
T ss_pred             cccCEEEEEEEEeCC-Cc-eEEEEEEEEcC
Confidence            999999999999853 22 33445555443

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.55  E-value=2.6e-06  Score=48.95  Aligned_cols=87  Identities=17%  Similarity=0.366  Sum_probs=52.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|++++|.|.....+...+.|||.  +..   +... .   .....++....... .....|.+++.+|.|.|.|.+
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~-~~sL~I~~l~~~DsG~Y~C~~   89 (143)
T 3u6r_L           11 SLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGT-DFTLTISNLEPEDFAVYYCQQ   89 (143)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEECSCCGGGCEEEEEEE
T ss_pred             EEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCC-EEEEEEccCcccCCEEEEEEE
Confidence            567899999999988766778999984  221   1100 0   00111222211122 234457888999999999998


Q ss_pred             EeCCccceeeeEEEEEEe
Q psy8666          73 RNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v~~   90 (124)
                      .+.. ........|.|..
T Consensus        90 ~~~~-~~fg~gt~L~V~~  106 (143)
T 3u6r_L           90 RSDW-VTFGGGTKVEIKA  106 (143)
T ss_dssp             CSSB-CEECCCEEEEEC-
T ss_pred             ecCC-CEECCCEEEEECC
Confidence            8754 3334456677754

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.55  E-value=1.7e-06  Score=48.29  Aligned_cols=72  Identities=24%  Similarity=0.350  Sum_probs=44.0

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEeeccCCCCCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVETSKSDAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+.+|+++.|.|...+..  .+.+.|||..  ....... ....+... ...........|.+++.+|.|.|.|.+..
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (121)
T 2i24_N           11 TKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESI-SDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCKPES   87 (121)
T ss_dssp             EEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEE-CSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeE-ecCCCeEEEecCCCCEEEEEECCCChhhCEEEEEEEec
Confidence            577899999999987543  4578999853  2111000 00112211 11122234456788899999999999875

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=98.54  E-value=2.3e-06  Score=47.31  Aligned_cols=88  Identities=18%  Similarity=0.265  Sum_probs=51.1

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEeC--CE--Eeec--cC----CCCCceEEEcc-CCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYKD--GE--LVET--SK----SDAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k~--g~--~~~~--~~----~~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|...... ...+.|||.  +.  .+..  ..    .....++.... .........|.+++.+|.|.|.
T Consensus        10 ~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~   89 (117)
T 3bp6_A           10 TVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYL   89 (117)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             EEeCCCCEEEEeEeecCCCCCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcCCCCEEEEEECcCCHHHCEEEE
Confidence            577899999999987543 467999984  32  1110  00    00112222211 1222334567888999999999


Q ss_pred             EEeEeCCccc---eeeeEEEEEE
Q psy8666          70 CLARNSVGTA---VSRNATLQVA   89 (124)
Q Consensus        70 C~~~~~~~~~---~~~~~~l~v~   89 (124)
                      |.+.+.....   .+..+.|.|.
T Consensus        90 C~~~~~~~~~~~~~~~~t~L~V~  112 (117)
T 3bp6_A           90 CGAISLHPKLKIEESPGAELVVT  112 (117)
T ss_dssp             EEEEECSSSCEEEECCCEEEEEC
T ss_pred             EEEEecCCccccccCCcEEEEEE
Confidence            9988754321   2334555554

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.54  E-value=7.9e-08  Score=59.65  Aligned_cols=74  Identities=11%  Similarity=0.147  Sum_probs=47.9

Q ss_pred             EecCCCEEEEEeeecc---CCC-eEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           3 VAKNEPVTLNCKAEGK---PEP-TIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~---p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +..|+.+.|.|.+.+.   |.+ .+.|+|++..+.....   ........+.  ......|..++..|.|.|.|.+.+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~---~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~  105 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQT---HAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA  105 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEE---CCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCccc---ccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEeccc
Confidence            3579999999999877   766 8999998865432100   0001111111  12234455667889999999999987


Q ss_pred             ccc
Q psy8666          77 GTA   79 (124)
Q Consensus        77 ~~~   79 (124)
                      +..
T Consensus       106 ~~~  108 (239)
T 1i1c_A          106 FPA  108 (239)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            753

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.54  E-value=3.3e-06  Score=51.25  Aligned_cols=89  Identities=18%  Similarity=0.318  Sum_probs=52.2

Q ss_pred             CEEecCCCEEEEEeeeccC--CCeEEEEeCC--EEe---e-ccC-------CCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           1 MVVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELV---E-TSK-------SDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~---~-~~~-------~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      +.+..|+.+.|.|.+.+.+  .+.+.|+|+.  ...   . ...       .....+..... .........|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (215)
T 1c5d_H           10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (215)
T ss_dssp             CEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGG
T ss_pred             eeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCccc
Confidence            3577899999999998764  5789999852  211   0 000       00111222211 11112234568889999


Q ss_pred             CeEEEEEeEeCCcc--ceeeeEEEEEE
Q psy8666          65 GGVYWCLARNSVGT--AVSRNATLQVA   89 (124)
Q Consensus        65 ~g~y~C~~~~~~~~--~~~~~~~l~v~   89 (124)
                      .|.|.|.+.+..+.  .....+.|.|.
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~L~V~  116 (215)
T 1c5d_H           90 TAIYFCTREDGWNYFDYWGPGTMVTVS  116 (215)
T ss_dssp             CEEEEEEECCSSSCSCCBCCCEEEEEC
T ss_pred             CEEEEEEEecCCcccceEcCCEEEEec
Confidence            99999999986421  12234567775

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.54  E-value=2.3e-07  Score=54.70  Aligned_cols=54  Identities=17%  Similarity=0.226  Sum_probs=40.2

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      ..|.|.+.+.|.|.+.|++++..+...           ....  +...    ...|.|.|.|.+.|..+..
T Consensus       108 ~~L~C~~~~~p~p~i~W~~~~~~l~~~-----------~~~~--l~~~----~~~~~g~Y~C~a~N~~~~~  161 (171)
T 1ccz_A          108 ATLTCEVLEGTDVELKLYQGKEHLRSL-----------RQKT--MSYQ----WTNLRAPFKCKAVNRVSQE  161 (171)
T ss_dssp             TEEEEECSSCSSCEEEEEETTEEEEEE-----------SSSE--EEEE----CSCCSSCEEEEEEETTEEE
T ss_pred             cEEEEEeCCCCCcEEEEEECCEECcCC-----------cceE--EEEe----ccCCCceEEEEEEcccCcc
Confidence            478999988899999999999877631           1111  1122    4678899999999998775

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.54  E-value=2.8e-07  Score=55.02  Aligned_cols=58  Identities=19%  Similarity=0.342  Sum_probs=42.3

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      +..+.|.|.+.+.|.|.+.|+++|..+..            ....+. ...    ...|.|.|.|.+.|..+...
T Consensus       115 ~~~v~L~C~~~~~p~~~~~W~~~g~~l~~------------~~~~i~-~~~----~~~d~G~Y~C~a~N~~~~~~  172 (182)
T 1hnf_A          115 CINTTLTCEVMNGTDPELNLYQDGKHLKL------------SQRVIT-HKW----TTSLSAKFKCTAGNKVSKES  172 (182)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEESSCEEEE------------ESSCEE-EEC----CSCEEEEEEEEEECSSCEEE
T ss_pred             cCcEEEEeEccCCCCCEEEEEECCEECCC------------CCcEEE-Eec----ccCCCcEEEEEEEeCCCCcE
Confidence            34688999999888999999999987621            111121 111    46889999999999998763

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.53  E-value=1.4e-07  Score=57.12  Aligned_cols=73  Identities=12%  Similarity=0.166  Sum_probs=44.6

Q ss_pred             cCCCEEEEEeeec-cCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcE--EEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           5 KNEPVTLNCKAEG-KPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSL--FFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         5 ~G~~~~l~C~~~~-~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .|+.+.|.|.+.+ .|.| .+.|+|+|..+..... .........++..  .....|...+..|.|.|.|.+.|....
T Consensus       128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~-~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          128 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ-ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE-EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEEEeEcCCceEEEEEECCeecCCCee-EecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            3778999999987 4555 8999999987653200 0000000112221  122334455678899999999997644

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.53  E-value=5.9e-07  Score=49.35  Aligned_cols=70  Identities=17%  Similarity=0.382  Sum_probs=41.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE---eec-cCCCCC-------ceEEEc--cCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VET-SKSDAK-------SQRVIL--PTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~~-~~~~~~-------~~~~~~--~~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|+.+.|.|.....+.+.+.|||.  +..   +.. ......       .+....  ....+    .|.+++.+|.|
T Consensus        12 ~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~L----~I~~~~~~Dsg   87 (112)
T 1fo0_B           12 LVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTEL----RLQVANMSQGR   87 (112)
T ss_dssp             ECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEE----EEEEESCCSCE
T ss_pred             EEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCCeE----EEcCCCHhHCE
Confidence            467899999999986666778999984  221   110 000000       111111  11133    34555999999


Q ss_pred             EEEEEeEeC
Q psy8666          67 VYWCLARNS   75 (124)
Q Consensus        67 ~y~C~~~~~   75 (124)
                      .|.|.+.+.
T Consensus        88 ~Y~C~~~~~   96 (112)
T 1fo0_B           88 TLYCTCSAD   96 (112)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEEcC
Confidence            999998764

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.53  E-value=3.8e-06  Score=52.18  Aligned_cols=71  Identities=14%  Similarity=0.301  Sum_probs=43.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE--eeccCCCCC--------c-eEEEccCCc--EEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL--VETSKSDAK--------S-QRVILPTGS--LFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~--~~~~~~~~~--------~-~~~~~~~~~--~~~~~~i~~~~~~d~g   66 (124)
                      .+..|+.+.|.|...+.+.+.+.|||.  +..  +........        . +........  +.+    .+++.+|.|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I----~~v~~~DsG   87 (253)
T 3to4_D           12 LVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRL----QVANMSQGR   87 (253)
T ss_dssp             EEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEE----EEESCSSCE
T ss_pred             EEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEE----ccCChhhCe
Confidence            467899999999988888899999982  211  110000000        0 111111111  443    444999999


Q ss_pred             EEEEEeEeCC
Q psy8666          67 VYWCLARNSV   76 (124)
Q Consensus        67 ~y~C~~~~~~   76 (124)
                      .|.|.+.+..
T Consensus        88 ~Y~C~~~~~~   97 (253)
T 3to4_D           88 TLYCTSSADH   97 (253)
T ss_dssp             EEEEEEECSC
T ss_pred             EEEEEEecCC
Confidence            9999998653

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.52  E-value=1.8e-07  Score=57.89  Aligned_cols=84  Identities=21%  Similarity=0.354  Sum_probs=45.3

Q ss_pred             cCCCEEEEEeeec-cCCC-eEEEEeCCEEeeccCC-CCC---ceEEEccCCcEE--EEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEG-KPEP-TIEWYKDGELVETSKS-DAK---SQRVILPTGSLF--FLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~-~p~p-~v~w~k~g~~~~~~~~-~~~---~~~~~~~~~~~~--~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .|+.+.|.|.+.+ .|.| .+.|+++|..+..... ...   ........+...  ....+......|.|.|.|.+.|..
T Consensus       132 ~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~  211 (248)
T 3pv7_A          132 KENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHAS  211 (248)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTT
T ss_pred             cCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCC
Confidence            4667789999988 7888 9999999864321100 000   011112222222  223344556778899999999987


Q ss_pred             ccc-eeeeEEEEE
Q psy8666          77 GTA-VSRNATLQV   88 (124)
Q Consensus        77 ~~~-~~~~~~l~v   88 (124)
                      +.. ....+.|.|
T Consensus       212 ~~~~~~~~v~l~V  224 (248)
T 3pv7_A          212 LHTPLRSNFTLTA  224 (248)
T ss_dssp             CSSCEEEEECC--
T ss_pred             CCCCcEEEEEEEE
Confidence            753 244555555

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.52  E-value=3.4e-07  Score=57.41  Aligned_cols=88  Identities=16%  Similarity=0.303  Sum_probs=50.5

Q ss_pred             EEecCCCEEEEEeeeccC-----CCeEEEEeCC--EE---eeccC----CCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-----EPTIEWYKDG--EL---VETSK----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-----~p~v~w~k~g--~~---~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+.+.|.|.+.+.+     .+.+.|+|+.  ..   +....    .....+......... ....|.+++.+|.|.
T Consensus        26 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~DsG~  104 (268)
T 1x9q_A           26 PVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTD-FTLKINRVEAEDLGV  104 (268)
T ss_dssp             CCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE-EEEEESSCCGGGCEE
T ss_pred             EecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCE-EEEEECCCChhHCEE
Confidence            356899999999998776     4789999852  21   11000    000111111111111 234568889999999


Q ss_pred             EEEEeEeCCccceeeeEEEEEEe
Q psy8666          68 YWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      |.|.+.+..+........|.|..
T Consensus       105 Y~C~~~~~~~~~~~~~~~L~V~~  127 (268)
T 1x9q_A          105 YFCSQSTHVPWTFGGGTKLEIKS  127 (268)
T ss_dssp             EEEEECSSSSCEECCCEEEC---
T ss_pred             EEEEEecCCCceEcCCEEEEEcc
Confidence            99999987543323345566554

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.52  E-value=4e-07  Score=60.86  Aligned_cols=73  Identities=12%  Similarity=0.138  Sum_probs=49.1

Q ss_pred             ecCCCEEEEEeeeccC----CCeEEEEeCCEEeeccCCCCCceEEEccCC--cEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           4 AKNEPVTLNCKAEGKP----EPTIEWYKDGELVETSKSDAKSQRVILPTG--SLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p----~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      ..|+.+.|.|.+.+.+    .+.+.|+|++..+....   .........+  .......|..++..|.|.|.|.+.|..+
T Consensus       253 ~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~  329 (444)
T 1igt_B          253 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ---TQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  329 (444)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTT---CBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             ecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcc---cccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCC
Confidence            5699999999998874    35899999998765321   0111111122  1222345566688999999999999887


Q ss_pred             cc
Q psy8666          78 TA   79 (124)
Q Consensus        78 ~~   79 (124)
                      ..
T Consensus       330 ~~  331 (444)
T 1igt_B          330 PA  331 (444)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=98.52  E-value=6.5e-06  Score=45.82  Aligned_cols=87  Identities=17%  Similarity=0.291  Sum_probs=49.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--E---Eee-ccCCC------CCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--E---LVE-TSKSD------AKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~---~~~-~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+++.|.|... .....+.|||..  .   .+. .....      ...+..............|.+++.+|.|.|.
T Consensus        12 ~v~~G~~vtL~C~~~-~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~   90 (121)
T 2oi9_C           12 VAVTGEKVTLSCNQT-NNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYF   90 (121)
T ss_dssp             EEETTCCEEEEEEES-SCCSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCSSSEEEEEESSCCGGGCEEEE
T ss_pred             EecCCCcEEEEEEec-CCCCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCCCCEEEEEECCCCHHHCEEEE
Confidence            577899999999964 345679999842  1   111 10000      0112222222222344567888999999999


Q ss_pred             EEeEeCCccceeeeEEEEEE
Q psy8666          70 CLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        70 C~~~~~~~~~~~~~~~l~v~   89 (124)
                      |.+.+...........|.|.
T Consensus        91 C~~~~~~~~~fg~GT~l~v~  110 (121)
T 2oi9_C           91 CASGGGGTLYFGAGTRLSVL  110 (121)
T ss_dssp             EEEESSSCEEECCCEEEEEE
T ss_pred             EEEccCCccEECCCeEEEEe
Confidence            99876432222334455543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.52  E-value=3.7e-06  Score=51.31  Aligned_cols=89  Identities=16%  Similarity=0.256  Sum_probs=52.3

Q ss_pred             CEEecCCCEEEEEeeeccC--CCeEEEEeCC--EEe--ecc--C--------CCCCceEEEcc-CCcEEEEEEEcCCCcc
Q psy8666           1 MVVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELV--ETS--K--------SDAKSQRVILP-TGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~--~~~--~--------~~~~~~~~~~~-~~~~~~~~~i~~~~~~   63 (124)
                      +.+.+|+.+.|.|.+.+.+  .+.+.|||+.  ...  ...  .        .....+..... .........|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (223)
T 1dee_B           10 GVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE   89 (223)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHH
Confidence            4578899999999998765  4789999843  211  100  0        00011222111 1111223456888999


Q ss_pred             CCeEEEEEeEeCCc----c-ceeeeEEEEEE
Q psy8666          64 DGGVYWCLARNSVG----T-AVSRNATLQVA   89 (124)
Q Consensus        64 d~g~y~C~~~~~~~----~-~~~~~~~l~v~   89 (124)
                      |.|.|.|.+.+..+    . .....+.|.|.
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~  120 (223)
T 1dee_B           90 DTAVYYCAKVKFYDPTAPNDYWGQGTLVTVS  120 (223)
T ss_dssp             GCEEEEEEEESSSSTTCCEEEECCCEEEEEC
T ss_pred             HCEEEEEEEeccccCcccceeecCcEEEEEc
Confidence            99999999998642    1 11234567776

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.52  E-value=3.3e-06  Score=51.67  Aligned_cols=77  Identities=17%  Similarity=0.317  Sum_probs=47.3

Q ss_pred             CEEecCCCEEEEEeeeccCC----CeEEEEeC--CEEe---eccCC--------CCCceEEEcc-CCcEEEEEEEcCCCc
Q psy8666           1 MVVAKNEPVTLNCKAEGKPE----PTIEWYKD--GELV---ETSKS--------DAKSQRVILP-TGSLFFLRVVHGKKE   62 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~----p~v~w~k~--g~~~---~~~~~--------~~~~~~~~~~-~~~~~~~~~i~~~~~   62 (124)
                      +.+..|+.+.|.|.+.+.|.    +.+.|+|+  +..+   .....        ....+..... .........|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   89 (228)
T 3bae_H           10 GLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDT   89 (228)
T ss_dssp             SEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCG
T ss_pred             eeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCc
Confidence            35778999999999988764    88999984  2221   10000        0011222111 111113345688899


Q ss_pred             cCCeEEEEEeEeCCc
Q psy8666          63 QDGGVYWCLARNSVG   77 (124)
Q Consensus        63 ~d~g~y~C~~~~~~~   77 (124)
                      +|.|.|.|.+.+..+
T Consensus        90 ~D~G~Y~C~~~~~~g  104 (228)
T 3bae_H           90 ADTATYYCARRGFYG  104 (228)
T ss_dssp             GGCEEEEEEEEEEST
T ss_pred             ccCEEEEEEEecCCC
Confidence            999999999998654

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.51  E-value=3.8e-06  Score=46.86  Aligned_cols=87  Identities=22%  Similarity=0.376  Sum_probs=49.6

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCCE-----Eeec-cCC---CCCceEEEc-cCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDGE-----LVET-SKS---DAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g~-----~~~~-~~~---~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+++.|.|.....  ....+.|||...     .+.. ...   ....+.... ..........|.+++.+|.|.|.
T Consensus        21 ~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~  100 (122)
T 1hkf_A           21 QSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYW  100 (122)
T ss_dssp             EECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             EEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCHHHCEEEE
Confidence            56789999999997643  235789998532     1211 110   011222221 11222334567888999999999


Q ss_pred             EEeEeCCccceeeeEEEEE
Q psy8666          70 CLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        70 C~~~~~~~~~~~~~~~l~v   88 (124)
                      |...............|.+
T Consensus       101 C~v~~~~~~~~~~~~~l~L  119 (122)
T 1hkf_A          101 CRIYRPSDNSVSKSVRFYL  119 (122)
T ss_dssp             EEEECTTTCCEEEEEEEEE
T ss_pred             EEEEcCCCCcccccEEEEE
Confidence            9988754333233344433

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.51  E-value=1.2e-06  Score=48.00  Aligned_cols=72  Identities=18%  Similarity=0.306  Sum_probs=43.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eec-cCCCC---CceEEEc-cCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VET-SKSDA---KSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~-~~~~~---~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.+.|.|...+.+.+.+.|||..  ..   +.. .....   ..+.... ..........|.+++.+|.|.|.|.
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~   90 (112)
T 2z35_A           11 ALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCA   90 (112)
T ss_dssp             EEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCSEEEEE
T ss_pred             EEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEE
Confidence            5778999999999877677889999843  11   110 00000   0111111 1111112245678899999999999


Q ss_pred             eE
Q psy8666          72 AR   73 (124)
Q Consensus        72 ~~   73 (124)
                      +.
T Consensus        91 ~~   92 (112)
T 2z35_A           91 LS   92 (112)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.51  E-value=4e-06  Score=51.43  Aligned_cols=73  Identities=22%  Similarity=0.332  Sum_probs=43.8

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEeecc--CC----------CCCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVETS--KS----------DAKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~~~--~~----------~~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.|  .+.+.|+|+  +..+...  ..          ....+.... ..........|.+++.+|
T Consensus       130 ~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  209 (240)
T 1moe_A          130 LVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSED  209 (240)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHH
Confidence            356799999999998876  358999995  3221100  00          000111111 111112334568889999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .|.|.|.+.+
T Consensus       210 ~G~Y~C~a~~  219 (240)
T 1moe_A          210 TAVYYCAPFG  219 (240)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEEEe
Confidence            9999999984

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.51  E-value=1.2e-07  Score=57.68  Aligned_cols=70  Identities=20%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             ecCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcE--EEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           4 AKNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSL--FFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      ..|+.+.|.|.+.+. |.| .+.|+++|..+...     ........+..  .....|...+..| |.|.|.+.|..+..
T Consensus       140 ~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~-----~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~  213 (222)
T 1q9r_B          140 QTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH-----TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  213 (222)
T ss_dssp             CCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE-----EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             cCCCcEEEEEEEccEECCCCEEEEecCCeEcceE-----eccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCC
Confidence            368889999999886 888 99999998654210     01111122211  1223445556778 99999999988764

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.50  E-value=1.6e-06  Score=47.75  Aligned_cols=74  Identities=18%  Similarity=0.305  Sum_probs=45.0

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeC--CEE---eec-cC-----C--CCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKD--GEL---VET-SK-----S--DAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~--g~~---~~~-~~-----~--~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+++.|.|...+. +.+.+.|||.  +..   +.. ..     .  ....+........ .....|.+++.+|.|.
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~L~I~~~~~~Dsg~   90 (115)
T 2otu_A           12 SFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGA-DRYLSISNIQPEDEAI   90 (115)
T ss_dssp             ECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEE
T ss_pred             EECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccCC-EEEEEECCCChhHCEE
Confidence            46789999999998765 5678999983  221   110 00     0  0011121111111 2345578889999999


Q ss_pred             EEEEeEeCC
Q psy8666          68 YWCLARNSV   76 (124)
Q Consensus        68 y~C~~~~~~   76 (124)
                      |.|.+.+..
T Consensus        91 Y~C~~~~~~   99 (115)
T 2otu_A           91 YICGVGDTI   99 (115)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEecCC
Confidence            999988743

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.50  E-value=2e-07  Score=60.13  Aligned_cols=78  Identities=21%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             EecCCCEEEEEeeeccC-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKP-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+++.|.|.+.+.+ .+.+.|++++..+...     ........+.+    .|..++..|.|.|.|..   .|.. .
T Consensus        18 ~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~L----~i~~v~~~d~G~Y~C~~---~g~~-~   84 (325)
T 1n26_A           18 SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH-----PSRWAGMGRRL----LLRSVQLHDSGNYSCYR---AGRP-A   84 (325)
T ss_dssp             ECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC-----CEEEEEESSEE----EECSCCGGGCEEEEEES---SSSC-S
T ss_pred             CCCCCcEEEEeCCCCCCCCceEEEEECCccCCcc-----ccccccccceE----EecccchhhCeEeEEEe---CCEE-e
Confidence            35899999999987654 7899999977654211     11122233333    35666899999999993   5555 4


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|..+|.
T Consensus        85 ~~~~L~V~~pP~   96 (325)
T 1n26_A           85 GTVHLLVDVPPE   96 (325)
T ss_dssp             CEEEEEECCCCC
T ss_pred             eeEEEEeccCCC
Confidence            567888877654

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.50  E-value=1.8e-06  Score=53.76  Aligned_cols=88  Identities=17%  Similarity=0.323  Sum_probs=50.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EEee--cc--CCC------CCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--ELVE--TS--KSD------AKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~~~--~~--~~~------~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+..|+.+.|.|.+.+. .|.+.|+|+.  ....  ..  ...      ...++.............|.+++.+|.|.|.
T Consensus       148 ~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~  226 (256)
T 3tf7_C          148 VTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYF  226 (256)
T ss_dssp             EEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEE
T ss_pred             EEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEE
Confidence            35689999999999876 7789999832  1111  00  000      0001111111111123456788999999999


Q ss_pred             EEeEeCCccc-eeeeEEEEEEe
Q psy8666          70 CLARNSVGTA-VSRNATLQVAV   90 (124)
Q Consensus        70 C~~~~~~~~~-~~~~~~l~v~~   90 (124)
                      |.+.|..|.. ......|.|..
T Consensus       227 C~a~n~~g~~~fG~gt~l~v~~  248 (256)
T 3tf7_C          227 CASSDAPGQLYFGEGSKLTVLE  248 (256)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC
T ss_pred             EEecCCCCccEECCCeEEEEEc
Confidence            9999876542 33445566543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.49  E-value=4.1e-06  Score=52.47  Aligned_cols=88  Identities=13%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--ccCCCCC--------c-eEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--TSKSDAK--------S-QRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~~~~~~~--------~-~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+..|+.+.|.|.+.+ +.+.+.|||.  +....  .......        . +..............|.+++.+|.|.|
T Consensus        38 ~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y  116 (270)
T 3qib_D           38 VKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALY  116 (270)
T ss_dssp             EEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEE
T ss_pred             EEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEE
Confidence            4678999999999865 7789999982  21110  0000000        0 111111111122345688899999999


Q ss_pred             EEEeEeCCc---cceeeeEEEEEEe
Q psy8666          69 WCLARNSVG---TAVSRNATLQVAV   90 (124)
Q Consensus        69 ~C~~~~~~~---~~~~~~~~l~v~~   90 (124)
                      .|.+.+...   ........|.|..
T Consensus       117 ~C~~~~~~~~~~~~~~~~~~l~V~~  141 (270)
T 3qib_D          117 LCASSLNWSQDTQYFGPGTRLLVLE  141 (270)
T ss_dssp             EEEEESCTTCCCCEECCCEEEEEES
T ss_pred             EEEEecCCCccceEECCcEEEEEcc
Confidence            999986321   1123345666654

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.48  E-value=3.4e-06  Score=56.38  Aligned_cols=89  Identities=17%  Similarity=0.269  Sum_probs=52.4

Q ss_pred             CEEecCCCEEEEEeeeccC--CCeEEEEeC--CEEee--ccCC----------CCCceEEEcc-CCcEEEEEEEcCCCcc
Q psy8666           1 MVVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVE--TSKS----------DAKSQRVILP-TGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~--~~~~----------~~~~~~~~~~-~~~~~~~~~i~~~~~~   63 (124)
                      +.+..|+.+.|.|.+.+.+  .+.+.|||+  +..+.  ....          ....+..... .........|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (444)
T 1igt_B           10 GLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSE   89 (444)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHH
Confidence            3577899999999998764  578999985  32211  0000          0001111111 1111123456788999


Q ss_pred             CCeEEEEEeEeCCcc--ceeeeEEEEEE
Q psy8666          64 DGGVYWCLARNSVGT--AVSRNATLQVA   89 (124)
Q Consensus        64 d~g~y~C~~~~~~~~--~~~~~~~l~v~   89 (124)
                      |.|.|.|.+.+..+.  .......|.|.
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~  117 (444)
T 1igt_B           90 DTAMYYCARHGGYYAMDYWGQGTTVTVS  117 (444)
T ss_dssp             GCEEEEEEEECSSSCEEEEBCCEEEEEC
T ss_pred             HCEEEEEEEecCCcccccccCcEEEEec
Confidence            999999999987543  22334566665

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.48  E-value=3.6e-06  Score=52.83  Aligned_cols=89  Identities=21%  Similarity=0.273  Sum_probs=52.0

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEee--ccCCC----------CCceEEEccC-CcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVE--TSKSD----------AKSQRVILPT-GSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~--~~~~~----------~~~~~~~~~~-~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|||+.  ..+.  .....          ...+...... ........|.+++.+|
T Consensus        17 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   96 (261)
T 2xqy_G           17 LVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSED   96 (261)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCccc
Confidence            467899999999998766  6789999863  2211  00000          0011111110 1112234568889999


Q ss_pred             CeEEEEEeEeCCcc--ceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSVGT--AVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~~~--~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+..+.  .....+.|.|..
T Consensus        97 sG~Y~C~~~~~~~~~~~~~~~~~L~V~~  124 (261)
T 2xqy_G           97 SAVYYCGRLGYVYGFDYWGQGTTLTVSS  124 (261)
T ss_dssp             CEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             CeEEEEEEecCCCcceEECCCEEEEEcc
Confidence            99999999985421  112345666654

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.48  E-value=2.5e-06  Score=46.92  Aligned_cols=73  Identities=21%  Similarity=0.420  Sum_probs=43.8

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCE-----E---eec-cC--------CCCCceEEEcc--CCcEEEEEEEcCCC
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGE-----L---VET-SK--------SDAKSQRVILP--TGSLFFLRVVHGKK   61 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~-----~---~~~-~~--------~~~~~~~~~~~--~~~~~~~~~i~~~~   61 (124)
                      .+.+|+++.|.|...+. +...+.|||...     .   +.. ..        .....+.....  .... ....|.+++
T Consensus         9 ~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~-~~L~I~~~~   87 (115)
T 2atp_B            9 LVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRR-PFLSIMNVK   87 (115)
T ss_dssp             EECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSS-CEEEECSCC
T ss_pred             EEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCE-EEEEECCCC
Confidence            57789999999998754 466799998542     1   110 00        00011222211  1111 234567889


Q ss_pred             ccCCeEEEEEeEeC
Q psy8666          62 EQDGGVYWCLARNS   75 (124)
Q Consensus        62 ~~d~g~y~C~~~~~   75 (124)
                      .+|.|.|.|.+...
T Consensus        88 ~~DsG~Y~C~~~~~  101 (115)
T 2atp_B           88 PEDSDFYFCATVGS  101 (115)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             HHHCEEEEEeEccC
Confidence            99999999988753

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=98.47  E-value=5.5e-06  Score=46.37  Aligned_cols=88  Identities=18%  Similarity=0.247  Sum_probs=49.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE--eeccC-C-C------CCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL--VETSK-S-D------AKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~--~~~~~-~-~------~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+++.|.|.........+.|||.  +..  +.... . .      ...+..............|.+++.+|.|.|.
T Consensus        16 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~~~~~~sL~I~~~~~~Dsg~Y~   95 (125)
T 3r8b_B           16 VAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPSQENFSLILELATPSQTSVYF   95 (125)
T ss_dssp             EEETTCCEEEEEEEESCCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             EEcCCCcEEEEEEECCCCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEecCCCEEEEEECCCChhhCEEEE
Confidence            467899999999987655558999984  221  11100 0 0      0011111111112344567888999999999


Q ss_pred             EEeEeCCccceeeeEEEEEE
Q psy8666          70 CLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        70 C~~~~~~~~~~~~~~~l~v~   89 (124)
                      |.+...........+.|.|.
T Consensus        96 C~~~~~~~~~fg~GT~l~V~  115 (125)
T 3r8b_B           96 CASGGGGTLYFGAGTRLSVL  115 (125)
T ss_dssp             EEEEETTEEEECCCEEEEEE
T ss_pred             EEEcCCCCcEECCCEEEEEe
Confidence            98876432222334455554

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.47  E-value=6.1e-06  Score=45.38  Aligned_cols=73  Identities=22%  Similarity=0.347  Sum_probs=44.2

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCC--EE---ee-ccCCC------CCceEEEcc--CCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDG--EL---VE-TSKSD------AKSQRVILP--TGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g--~~---~~-~~~~~------~~~~~~~~~--~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|+++.|.|..... +.+.+.|||..  ..   +. .....      ...+.....  ... .....|.+++.+|.|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~-~~~L~I~~~~~~DsG   89 (116)
T 1tvd_A           11 TVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQK-AFHLVISPVRTEDSA   89 (116)
T ss_dssp             EEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGT-EEEEEESSCCGGGCE
T ss_pred             EEecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCC-EEEEEEccCChHHCE
Confidence            57789999999998754 56679999843  21   11 00000      011111111  111 223457888999999


Q ss_pred             EEEEEeEeC
Q psy8666          67 VYWCLARNS   75 (124)
Q Consensus        67 ~y~C~~~~~   75 (124)
                      .|.|.+.+.
T Consensus        90 ~Y~C~~~~~   98 (116)
T 1tvd_A           90 TYYCAFTLP   98 (116)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEeCC
Confidence            999999873

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.47  E-value=1.9e-06  Score=48.98  Aligned_cols=88  Identities=17%  Similarity=0.247  Sum_probs=50.3

Q ss_pred             EEecCCCEEEEEeeeccC---CCeEEEEeCC--EEe--eccC-----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP---EPTIEWYKDG--ELV--ETSK-----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p---~p~v~w~k~g--~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+++.|.|.....+   .+.+.|||..  ..+  ....     .....+........ .....|.+++.+|.|.|.
T Consensus        16 ~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~-~~sL~I~~v~~~DsG~Y~   94 (135)
T 1p4b_L           16 TTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGD-KAALTITGAQTEDEAIYF   94 (135)
T ss_dssp             EECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEETT-EEEEEEESCCGGGCEEEE
T ss_pred             EEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCCC-EEEEEECCCChhHCEEEE
Confidence            577899999999987654   4679999842  111  1000     00011221111111 234456888999999999


Q ss_pred             EEeEeCCccceeeeEEEEEEe
Q psy8666          70 CLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        70 C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      |.+.+.........+.|.|..
T Consensus        95 C~~~~~~~~~fg~GT~L~V~~  115 (135)
T 1p4b_L           95 CALWYSNHWVFGGGTKLTVLG  115 (135)
T ss_dssp             EEEECSSCEEECCCEEEEEC-
T ss_pred             EEEecCCCCEECCCEEEEEEc
Confidence            998875332223345555543

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=98.47  E-value=3.9e-06  Score=50.80  Aligned_cols=89  Identities=16%  Similarity=0.250  Sum_probs=49.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---ee-ccCCCC--CceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VE-TSKSDA--KSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~-~~~~~~--~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|...+.....+.|||..  ..   +. ......  ..+.... ..........|.+++.+|.|.|.|.+
T Consensus        10 ~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~   89 (200)
T 2nw2_A           10 TATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAV   89 (200)
T ss_dssp             EEETTCCEEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEccCCCEEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccCCcEEEEE
Confidence            5789999999999876556689999843  21   11 000000  1111111 11112234557888999999999998


Q ss_pred             EeC---CccceeeeEEEEEEe
Q psy8666          73 RNS---VGTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~---~~~~~~~~~~l~v~~   90 (124)
                      .+.   ..........|.|..
T Consensus        90 ~~~~~~~~~~fg~gt~L~V~~  110 (200)
T 2nw2_A           90 QASGGSYIPTFGRGTSLIVHP  110 (200)
T ss_dssp             C---CCCCCEECCCEEEEEEC
T ss_pred             EcCCcceeeeeCCCEEEEEec
Confidence            751   111122345666654

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.47  E-value=7.9e-06  Score=45.34  Aligned_cols=74  Identities=18%  Similarity=0.333  Sum_probs=44.5

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--E--E-eec-cC-C------CCCceEEEccC-CcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--E--L-VET-SK-S------DAKSQRVILPT-GSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~--~-~~~-~~-~------~~~~~~~~~~~-~~~~~~~~i~~~~~~d~   65 (124)
                      .+.+|+.+.|.|...+.+  ...+.|||..  .  . +.. .. .      ....+.....+ ........|.+++.+|.
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Ds   90 (121)
T 1kxv_C           11 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   90 (121)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             EEcCCCcEEEEEEecCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHHC
Confidence            567899999999987543  4578999842  2  1 110 00 0      00112222211 12223455788899999


Q ss_pred             eEEEEEeEeC
Q psy8666          66 GVYWCLARNS   75 (124)
Q Consensus        66 g~y~C~~~~~   75 (124)
                      |.|.|.+.+.
T Consensus        91 g~Y~C~~~~~  100 (121)
T 1kxv_C           91 AMYYCKPSLR  100 (121)
T ss_dssp             EEEEEEEEES
T ss_pred             EEEEEEEEec
Confidence            9999998875

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.47  E-value=7.6e-06  Score=54.92  Aligned_cols=76  Identities=18%  Similarity=0.338  Sum_probs=46.7

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEee----c--c------CCCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVE----T--S------KSDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~----~--~------~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|||+  +....    .  .      ......+..... .........|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   90 (457)
T 1hzh_H           11 VKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSAD   90 (457)
T ss_dssp             EECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCccc
Confidence            467899999999998776  678999984  32111    0  0      000011211111 11111234568889999


Q ss_pred             CeEEEEEeEeCCc
Q psy8666          65 GGVYWCLARNSVG   77 (124)
Q Consensus        65 ~g~y~C~~~~~~~   77 (124)
                      .|.|.|.+.|..+
T Consensus        91 ~G~Y~C~~~~~~~  103 (457)
T 1hzh_H           91 TAVYYCARVGPYS  103 (457)
T ss_dssp             CEEEEEEECCCCC
T ss_pred             CEEEEEEEecCCc
Confidence            9999999998764

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=98.46  E-value=9.3e-06  Score=45.16  Aligned_cols=74  Identities=19%  Similarity=0.386  Sum_probs=45.1

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCCE--E---eec-cCC--------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDGE--L---VET-SKS--------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g~--~---~~~-~~~--------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|...+..  ...+.|||...  .   +.. ...        ....+..... .........|.+++.+|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   90 (123)
T 2wzp_D           11 LVQAGGSLRLSCTASRRTGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMNSLKPED   90 (123)
T ss_dssp             EEETTCCEEEEEEESSCCSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEETTEEEEEEEECSCCGGG
T ss_pred             EEcCCCcEEEEEEecCCCccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeCCCCEEEEEECCCCHHH
Confidence            577899999999987533  45789998531  1   110 000        0011222211 12233455678889999


Q ss_pred             CeEEEEEeEeC
Q psy8666          65 GGVYWCLARNS   75 (124)
Q Consensus        65 ~g~y~C~~~~~   75 (124)
                      .|.|.|.+.+.
T Consensus        91 sg~Y~C~~~~~  101 (123)
T 2wzp_D           91 TAIYYCAARSG  101 (123)
T ss_dssp             CEEEEEEEEES
T ss_pred             CEEEEEEEecC
Confidence            99999998875

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.46  E-value=3.8e-06  Score=51.23  Aligned_cols=89  Identities=16%  Similarity=0.284  Sum_probs=51.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eec--cCCC--CCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VET--SKSD--AKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~--~~~~--~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.+.|.|...+...+.+.|||..  ..   +..  ....  ...+.... ..........|.+++.+|.|.|.|.
T Consensus        14 ~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~   93 (210)
T 2eys_A           14 IILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICV   93 (210)
T ss_dssp             EEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEE
Confidence            5778999999999877666789999842  21   111  1000  01111111 1111223456788899999999999


Q ss_pred             eEeCC---c-cceeeeEEEEEEe
Q psy8666          72 ARNSV---G-TAVSRNATLQVAV   90 (124)
Q Consensus        72 ~~~~~---~-~~~~~~~~l~v~~   90 (124)
                      +.+..   . ........|.|..
T Consensus        94 ~~~~~~~~~~~~fg~gt~L~V~~  116 (210)
T 2eys_A           94 VSDRGSTLGRLYFGRGTQLTVWP  116 (210)
T ss_dssp             EESCSSTTCCEEECCCEEEEEEC
T ss_pred             EEccCCCcccceECCCEEEEEEC
Confidence            88732   1 1122345666653

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.46  E-value=1.2e-06  Score=49.41  Aligned_cols=91  Identities=13%  Similarity=0.183  Sum_probs=50.0

Q ss_pred             EEecCCCEEEEEeeec-------cCCCeEEEEeCCEE------eeccCC------CCCceEEEccCC-cEEEEEEEcCCC
Q psy8666           2 VVAKNEPVTLNCKAEG-------KPEPTIEWYKDGEL------VETSKS------DAKSQRVILPTG-SLFFLRVVHGKK   61 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-------~p~p~v~w~k~g~~------~~~~~~------~~~~~~~~~~~~-~~~~~~~i~~~~   61 (124)
                      .+..|+.+.|.|....       ...+.+.|||....      +.....      ....+.....+. .......|.+++
T Consensus        17 ~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   96 (132)
T 1nko_A           17 TVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDAR   96 (132)
T ss_dssp             EEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCEEECSCC
T ss_pred             EEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEEEEcccC
Confidence            5678999999999862       34578999986542      111100      001122222110 111123567789


Q ss_pred             ccCCeEEEEEeEeCCccc-e-eeeEEEEEEeee
Q psy8666          62 EQDGGVYWCLARNSVGTA-V-SRNATLQVAVVI   92 (124)
Q Consensus        62 ~~d~g~y~C~~~~~~~~~-~-~~~~~l~v~~~~   92 (124)
                      .+|.|.|.|.+.+..... . ...+.|.|..++
T Consensus        97 ~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V~~~~  129 (132)
T 1nko_A           97 MSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALT  129 (132)
T ss_dssp             GGGCEEEEEEEEETTEEEECTTSCEEEEEECCC
T ss_pred             cccCeeEEEEEEcCCCcccccCCceEEEecccC
Confidence            999999999988753111 1 234566665443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.45  E-value=1.4e-07  Score=57.81  Aligned_cols=75  Identities=13%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             EEecCCCEEEEEeeeccC-CC-eEEEEeCC--EEe---ecc--CC--CCCceEEEccCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EP-TIEWYKDG--ELV---ETS--KS--DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p-~v~w~k~g--~~~---~~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      .+..|+.+.|.|.+.+.+ .+ .+.|+|+.  ...   ...  ..  ....+......... ....|.+++.+|.|.|.|
T Consensus        30 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C  108 (234)
T 2j6e_L           30 SGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTS-ASLAISGLRSEDEADYYC  108 (234)
T ss_dssp             CBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTE-EEEEEESCCSTTCSEEEE
T ss_pred             EeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCe-EEEEECCCCHHHCEEEEE
Confidence            457899999999998754 34 69999863  221   100  00  00111111111111 233467779999999999


Q ss_pred             EeEeCCc
Q psy8666          71 LARNSVG   77 (124)
Q Consensus        71 ~~~~~~~   77 (124)
                      .+.+..+
T Consensus       109 ~~~~~~~  115 (234)
T 2j6e_L          109 ATWDDSL  115 (234)
T ss_dssp             EEEETTT
T ss_pred             EEEcCCc
Confidence            9999876

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.45  E-value=2.8e-06  Score=53.25  Aligned_cols=73  Identities=16%  Similarity=0.301  Sum_probs=43.8

Q ss_pred             EecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccC------------CCCCceEEEcc-CCcEEEEEEEcCCCcc
Q psy8666           3 VAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSK------------SDAKSQRVILP-TGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~------------~~~~~~~~~~~-~~~~~~~~~i~~~~~~   63 (124)
                      +.+|+.+.|.|.+.+.+.  +.+.|+|+  +..+.  ...            .....+..... .........|.+++.+
T Consensus       163 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  242 (268)
T 1x9q_A          163 VQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVE  242 (268)
T ss_dssp             ECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHH
Confidence            567999999999987653  78999985  32211  000            00011111111 1111123456788999


Q ss_pred             CCeEEEEEeEeC
Q psy8666          64 DGGVYWCLARNS   75 (124)
Q Consensus        64 d~g~y~C~~~~~   75 (124)
                      |.|.|.|.+.+.
T Consensus       243 DsG~Y~C~a~~~  254 (268)
T 1x9q_A          243 DTGIYYCTGASY  254 (268)
T ss_dssp             GCEEEEEEEEET
T ss_pred             HCEEEEEEEccC
Confidence            999999999874

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.45  E-value=5.9e-06  Score=51.03  Aligned_cols=89  Identities=16%  Similarity=0.286  Sum_probs=52.0

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCC--EEe---e-ccC-------CC-CCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDG--ELV---E-TSK-------SD-AKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g--~~~---~-~~~-------~~-~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.  +.+.+.|||+.  ..+   . ...       .. ...+.... ..........|.+++.+|
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   91 (242)
T 1hxm_B           12 TKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQD   91 (242)
T ss_dssp             EEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCccc
Confidence            56789999999998875  56789999842  211   1 000       00 11122111 111112234567889999


Q ss_pred             CeEEEEEeEeCCc------cceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSVG------TAVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~~------~~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+...      ........|.|..
T Consensus        92 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (242)
T 1hxm_B           92 IATYYCALWEAQQELGKKIKVFGPGTKLIITD  123 (242)
T ss_dssp             CEEEEEEEEEECSSTTCEEEEECCCEEEEEES
T ss_pred             CEEEEEeeecCCccccccceeEcCcEEEEEcc
Confidence            9999999988531      1122345777765

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.45  E-value=1.5e-05  Score=48.97  Aligned_cols=90  Identities=18%  Similarity=0.273  Sum_probs=51.2

Q ss_pred             CEEecCCCEEEEEeeeccC--CCeEEEEeCC--EE---ee-ccC-------CCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           1 MVVAKNEPVTLNCKAEGKP--EPTIEWYKDG--EL---VE-TSK-------SDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~---~~-~~~-------~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      +.+..|+.+.|.|.+.+.+  .+.+.|||+.  ..   +. ...       .....+..... .........|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (232)
T 1dn0_B           10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (232)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCccc
Confidence            3577899999999998764  5789999842  21   11 000       00011222111 11112234568889999


Q ss_pred             CeEEEEEeEeCC--cc---ceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSV--GT---AVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~--~~---~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+..  +.   .....+.|.|..
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  120 (232)
T 1dn0_B           90 TAVYYCARPPHDTSGHYWNYWGQGTLVTVSS  120 (232)
T ss_dssp             CEEEEEEECSSTTSCSCCSEECCCEEEEECS
T ss_pred             CEEEEEEEecCCcCCchhhhcccceEEEEcc
Confidence            999999998321  11   122345777754

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.44  E-value=4.9e-06  Score=52.16  Aligned_cols=76  Identities=18%  Similarity=0.320  Sum_probs=45.9

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEee--ccCC----------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVE--TSKS----------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~--~~~~----------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|||..  ..+.  ....          ....+..... .........|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   90 (257)
T 3bn9_D           11 LVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAED   90 (257)
T ss_dssp             EECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGGG
T ss_pred             EEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChhh
Confidence            467899999999998765  6789999853  2111  0000          0011111111 11111234567789999


Q ss_pred             CeEEEEEeEeCCc
Q psy8666          65 GGVYWCLARNSVG   77 (124)
Q Consensus        65 ~g~y~C~~~~~~~   77 (124)
                      .|.|.|.+.+..+
T Consensus        91 sG~Y~C~~~~~~g  103 (257)
T 3bn9_D           91 TAVYYCARPYLTY  103 (257)
T ss_dssp             CEEEEEEEECCSS
T ss_pred             CEEEEEEEecCCC
Confidence            9999999998754

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.44  E-value=1.6e-06  Score=54.77  Aligned_cols=90  Identities=14%  Similarity=0.226  Sum_probs=51.8

Q ss_pred             EEecCCCEEEEEeeec-cC-CCeEEEEeC--CEEeeccCCC-------CCceEEEccCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           2 VVAKNEPVTLNCKAEG-KP-EPTIEWYKD--GELVETSKSD-------AKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p-~p~v~w~k~--g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      .+.+|+++.|.|.+.+ .+ .+.+.|||.  +..+....+.       ...+......... ....|.+++.+|.|.|.|
T Consensus       150 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~DsG~Y~C  228 (280)
T 3fku_X          150 SKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNT-ASLTITGLQPEDEADYYC  228 (280)
T ss_dssp             EECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTE-EEEEECSCCGGGCSEEEE
T ss_pred             EEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCE-EEEEECCCCHHHCEEEEE
Confidence            4678999999999987 44 478999983  2222100000       0111111112222 234568889999999999


Q ss_pred             EeEeCC--ccceeeeEEEEEEeee
Q psy8666          71 LARNSV--GTAVSRNATLQVAVVI   92 (124)
Q Consensus        71 ~~~~~~--~~~~~~~~~l~v~~~~   92 (124)
                      .+.+..  .......+.|.|...+
T Consensus       229 ~~~~~~~~~~~~g~~t~l~V~~~~  252 (280)
T 3fku_X          229 STWDSSLSAVVFGGGTKLTVLGQP  252 (280)
T ss_dssp             EEEETTTTEEEEBCCCEEEEC---
T ss_pred             EEecCCCCceEECCCEEEEECCCC
Confidence            999876  2223445566665433

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.44  E-value=6.6e-06  Score=49.96  Aligned_cols=88  Identities=16%  Similarity=0.311  Sum_probs=50.1

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEe--eccCCC------------CCceEEEccC-CcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELV--ETSKSD------------AKSQRVILPT-GSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~--~~~~~~------------~~~~~~~~~~-~~~~~~~~i~~~~~   62 (124)
                      .+..|+.+.|.|.+.+.+  .+.+.|||..  ...  ......            ...+...... ........|.+++.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   90 (221)
T 3m8o_H           11 LVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLKS   90 (221)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCCG
T ss_pred             EEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCCH
Confidence            467899999999998643  6789999732  111  100000            0011111111 11122345688899


Q ss_pred             cCCeEEEEEeEeCCc-cceeeeEEEEEE
Q psy8666          63 QDGGVYWCLARNSVG-TAVSRNATLQVA   89 (124)
Q Consensus        63 ~d~g~y~C~~~~~~~-~~~~~~~~l~v~   89 (124)
                      +|.|.|.|.+.+... ........|.|.
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~~l~V~  118 (221)
T 3m8o_H           91 DDTAMYYCVIRGDVYNRQWGQGTLVTVS  118 (221)
T ss_dssp             GGCEEEEEEEESCTTCCCBBCCEEEEEC
T ss_pred             HHCEEEEEEEECCChhheECCCEEEEEe
Confidence            999999999988631 222334556664

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.44  E-value=2.1e-06  Score=52.98  Aligned_cols=73  Identities=18%  Similarity=0.335  Sum_probs=44.1

Q ss_pred             EecCCCEEEEEeeeccC--CCeEEEEeCC--EEee--c--cCCC--------CCceEEEcc-CCcEEEEEEEcCCCccCC
Q psy8666           3 VAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVE--T--SKSD--------AKSQRVILP-TGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~--~--~~~~--------~~~~~~~~~-~~~~~~~~~i~~~~~~d~   65 (124)
                      +..|+.+.|.|.+.+.+  .+.+.|+|+.  ..+.  .  ....        ...+..... .........|.+++.+|.
T Consensus       139 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds  218 (247)
T 1svz_A          139 KKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDT  218 (247)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHC
Confidence            56799999999998764  5689999853  2111  0  0000        001111111 011122345678899999


Q ss_pred             eEEEEEeEeC
Q psy8666          66 GVYWCLARNS   75 (124)
Q Consensus        66 g~y~C~~~~~   75 (124)
                      |.|.|.+.|.
T Consensus       219 G~Y~C~a~n~  228 (247)
T 1svz_A          219 ATYFCVRDRH  228 (247)
T ss_dssp             EEEEEEEEEG
T ss_pred             EEEEEEEecc
Confidence            9999999985

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=98.44  E-value=5.7e-06  Score=51.12  Aligned_cols=89  Identities=19%  Similarity=0.320  Sum_probs=50.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--ccCCCC-----CceEEEc-cCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--TSKSDA-----KSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~~~~~~-----~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.+.|.|...+.....+.|||.  |..+.  ......     ..+.... ..........|.+++.+|.|.|.|.
T Consensus        12 ~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~   91 (229)
T 2q86_A           12 VVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCV   91 (229)
T ss_dssp             EEETTCCEEEEEEECCSCCSCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEecCCCEEEEEEECCCCCcEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCcccCccEEEE
Confidence            567899999999987666678999984  22111  000000     0111111 1111223455788899999999999


Q ss_pred             eEeCCccceeeeEEEEEEe
Q psy8666          72 ARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        72 ~~~~~~~~~~~~~~l~v~~   90 (124)
                      +.+...........|.|..
T Consensus        92 ~~~~~~~~~g~gt~L~V~~  110 (229)
T 2q86_A           92 VGDRGSALFGSGTQLIVIP  110 (229)
T ss_dssp             ESCGGGCEECCCEEEEEEC
T ss_pred             EEecCcccccCCEEEEEEC
Confidence            8763211222344666653

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.44  E-value=1.7e-07  Score=58.17  Aligned_cols=73  Identities=12%  Similarity=0.154  Sum_probs=44.4

Q ss_pred             cCCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           5 KNEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .|+.+.|.|.+.+. |. +.+.|+|+|..+..... .........++.  ......|..++.+|.|.|.|.+.|....
T Consensus       168 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~-~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          168 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL-NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEE-EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEEecccCCCcEEEEEECCCcccCcce-eccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence            36789999999874 44 45999999987653200 000000011111  1223344555788999999999997654

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.44  E-value=3.8e-06  Score=46.99  Aligned_cols=88  Identities=16%  Similarity=0.287  Sum_probs=50.4

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GEL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      .+.+|+++.|.|...+.+  ...+.|||.  +..   +... .   .....+........ .....|.+++.+|.|.|.|
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~-~~sL~I~~l~~~DsG~Y~C   89 (123)
T 3t0v_A           11 SGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGT-SASLAISGLRSEDEADYYC   89 (123)
T ss_dssp             EECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEECSCCGGGCEEEEE
T ss_pred             EEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccCC-EEEEEECCCCHHHCEEEEE
Confidence            577899999999987654  467999984  221   1110 0   00011222211112 2345678889999999999


Q ss_pred             EeEeCCc--cceeeeEEEEEEe
Q psy8666          71 LARNSVG--TAVSRNATLQVAV   90 (124)
Q Consensus        71 ~~~~~~~--~~~~~~~~l~v~~   90 (124)
                      .+.+...  ........|.|..
T Consensus        90 ~~~~~~~~~~~fG~GT~l~V~~  111 (123)
T 3t0v_A           90 LSWDDSLNGWVFGGGTKVTVLD  111 (123)
T ss_dssp             EEEETTTTEEEEBCCEEEEECC
T ss_pred             EEEcCCCCceEECCCEEEEEcc
Confidence            9887531  1223344555543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.44  E-value=1.2e-06  Score=53.34  Aligned_cols=73  Identities=15%  Similarity=0.278  Sum_probs=47.1

Q ss_pred             ecCCCEEEEEeeecc-CC--CeEEEEeCCEEeeccCCCCCceEEEccCCcEE--EEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           4 AKNEPVTLNCKAEGK-PE--PTIEWYKDGELVETSKSDAKSQRVILPTGSLF--FLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~--p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      ..|+.+.|.|.+.+. |.  +.+.|++++..+....    .......++...  ....|......|.|.|.|.+.|..+.
T Consensus       135 ~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~----~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~  210 (220)
T 2fbj_H          135 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN----FPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP  210 (220)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE----CCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             cCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEe----cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCc
Confidence            468899999999876 66  6899999986542100    011112222222  22344555667899999999999877


Q ss_pred             ce
Q psy8666          79 AV   80 (124)
Q Consensus        79 ~~   80 (124)
                      ..
T Consensus       211 ~~  212 (220)
T 2fbj_H          211 VQ  212 (220)
T ss_dssp             CE
T ss_pred             eE
Confidence            63

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.43  E-value=4.1e-06  Score=52.52  Aligned_cols=87  Identities=21%  Similarity=0.313  Sum_probs=50.2

Q ss_pred             EecCCCEEEEEeeeccCC--CeEEEEeCC--EEee--cc--CCC--------CCceEEEc-cCCcEEEEEEEcCCCccCC
Q psy8666           3 VAKNEPVTLNCKAEGKPE--PTIEWYKDG--ELVE--TS--KSD--------AKSQRVIL-PTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~--p~v~w~k~g--~~~~--~~--~~~--------~~~~~~~~-~~~~~~~~~~i~~~~~~d~   65 (124)
                      +..|+.+.|.|.+.+.+.  +.+.|+|+.  ..+.  ..  ...        ...+.... ..........|.+++.+|.
T Consensus       150 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds  229 (264)
T 2gjj_A          150 VKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDS  229 (264)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccC
Confidence            567999999999987764  789999863  2111  00  000        00111111 1111123345688899999


Q ss_pred             eEEEEEeEeCC---c-cceeeeEEEEEE
Q psy8666          66 GVYWCLARNSV---G-TAVSRNATLQVA   89 (124)
Q Consensus        66 g~y~C~~~~~~---~-~~~~~~~~l~v~   89 (124)
                      |.|.|.+.|..   . ........|.|.
T Consensus       230 G~Y~C~a~n~~~~~~~~~fg~gt~l~v~  257 (264)
T 2gjj_A          230 ADYYCVRSGNYEEYAMDYWGQGTSVTVS  257 (264)
T ss_dssp             EEEEEEEECSGGGCSCCCBCCCEEEEEC
T ss_pred             EEEEEEEecCCCCcceEEECCCEEEEEe
Confidence            99999999851   1 112345566654

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.43  E-value=4.4e-06  Score=51.42  Aligned_cols=88  Identities=17%  Similarity=0.272  Sum_probs=50.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EEe--ec--cCC------CCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--ELV--ET--SKS------DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~~--~~--~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|.+. .+.+.+.|||+.  ...  ..  ...      ....+..............|.+++.+|.|.|.
T Consensus        10 ~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~   88 (238)
T 1bec_A           10 VAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVYF   88 (238)
T ss_dssp             EEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEEEE
T ss_pred             EEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEEEE
Confidence            577899999999985 467889999853  111  00  000      00011111111111233456888999999999


Q ss_pred             EEeEeCCc----cceeeeEEEEEEe
Q psy8666          70 CLARNSVG----TAVSRNATLQVAV   90 (124)
Q Consensus        70 C~~~~~~~----~~~~~~~~l~v~~   90 (124)
                      |.+.+..+    ........|.|..
T Consensus        89 C~~~~~~~~~~~~~~~~~~~l~V~~  113 (238)
T 1bec_A           89 CASGGGRGSYAEQFFGPGTRLTVLE  113 (238)
T ss_dssp             EEEESCTTCGGGCEECCCEEEEEES
T ss_pred             EEEecCCCCccccccCCCEEEEEec
Confidence            99998642    1112344566654

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.43  E-value=2.4e-06  Score=51.40  Aligned_cols=69  Identities=14%  Similarity=0.189  Sum_probs=43.9

Q ss_pred             CCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcE--EEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           6 NEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSL--FFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         6 G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      ++...+.|.. .+.|.+.+.|++++......     ........+..  .....|..++..|.|.|.|.+.|..+..
T Consensus       136 ~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~  207 (225)
T 4fmk_A          136 QSVAVARCVSTGGRPPARITWISSLGGEAKD-----TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEE  207 (225)
T ss_dssp             SCEEEEEEEEEEEBSCCEEEEECSSCCEEEE-----EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSS
T ss_pred             eeeeeeeeeecCCCCCCEEEEEECCccccCC-----cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCe
Confidence            4555566654 56788899999987654421     11112222322  2234556778999999999999987765

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.43  E-value=2.1e-07  Score=56.94  Aligned_cols=74  Identities=14%  Similarity=0.182  Sum_probs=44.8

Q ss_pred             cCCCEEEEEeeecc-C-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEE--EEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           5 KNEPVTLNCKAEGK-P-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLF--FLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .|+.+.|.|.+.+. | .+.+.|+|+|..+..... .........++...  ....+...+.+|.|.|.|.+.|.....
T Consensus       149 ~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~-~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  226 (237)
T 3sob_L          149 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ-ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  226 (237)
T ss_dssp             HHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE-EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEcccCCCceEEEEEECCCCCCCcee-ecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence            46779999999874 5 589999999987653100 00000011222221  222334446678999999999986543

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=98.43  E-value=6.9e-06  Score=45.46  Aligned_cols=74  Identities=19%  Similarity=0.315  Sum_probs=44.1

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEe---e-ccC--------CCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELV---E-TSK--------SDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~---~-~~~--------~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|...+.+  ...+.|||..  ...   . ...        .....+..... .........|.+++.+|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   90 (120)
T 3b9v_A           11 LVQPGGSLRLSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAED   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEeCCccEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEECCCCHHH
Confidence            567899999999987533  5679999842  211   1 000        00011222111 11122345578889999


Q ss_pred             CeEEEEEeEeC
Q psy8666          65 GGVYWCLARNS   75 (124)
Q Consensus        65 ~g~y~C~~~~~   75 (124)
                      .|.|.|.+.+.
T Consensus        91 sg~Y~C~~~~~  101 (120)
T 3b9v_A           91 TAVYYCARWGG  101 (120)
T ss_dssp             CEEEEEEEECT
T ss_pred             CEEEEEEEEcC
Confidence            99999998864

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=98.42  E-value=1.1e-05  Score=44.98  Aligned_cols=75  Identities=16%  Similarity=0.332  Sum_probs=44.8

Q ss_pred             CEEecCCCEEEEEeeecc--CCCeEEEEeC--CEE---ee-c---c--C-----CCCCceEEEcc-CCcEEEEEEEcCCC
Q psy8666           1 MVVAKNEPVTLNCKAEGK--PEPTIEWYKD--GEL---VE-T---S--K-----SDAKSQRVILP-TGSLFFLRVVHGKK   61 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~--p~p~v~w~k~--g~~---~~-~---~--~-----~~~~~~~~~~~-~~~~~~~~~i~~~~   61 (124)
                      +.+.+|+.+.|.|...+.  ....+.|||.  +..   +. .   .  .     .....+..... .........|.+++
T Consensus        10 ~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~y~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   89 (124)
T 1dlf_H           10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (124)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             EEEcCCCCEEEEeECCCccCCCCeEEEEEECCCCCceEEEEEEeccCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            457889999999998753  2567999973  221   11 1   0  0     00111222221 11222345578889


Q ss_pred             ccCCeEEEEEeEeC
Q psy8666          62 EQDGGVYWCLARNS   75 (124)
Q Consensus        62 ~~d~g~y~C~~~~~   75 (124)
                      .+|.|.|.|.+.+.
T Consensus        90 ~~Dsg~Y~C~~~~~  103 (124)
T 1dlf_H           90 AEDTGIYYCTGIYY  103 (124)
T ss_dssp             GGGCEEEEEEEEBT
T ss_pred             HHHCEEEEEEEEeC
Confidence            99999999998864

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=98.41  E-value=2.4e-06  Score=47.01  Aligned_cols=76  Identities=9%  Similarity=0.196  Sum_probs=45.3

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCC--EE---eeccC-CCC------CceEEEcc-CCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDG--EL---VETSK-SDA------KSQRVILP-TGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g--~~---~~~~~-~~~------~~~~~~~~-~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|+++.|.|...+.  ....+.|||..  ..   +.... ...      ..+..... .........|.+++.+|.|
T Consensus        10 ~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg   89 (114)
T 1u9k_A           10 DLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSG   89 (114)
T ss_dssp             EECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             EEeCCCcEEEEeEecCcccCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEEEEECCCChHHCE
Confidence            57789999999998643  34579999852  21   11100 000      01111111 1112234557888999999


Q ss_pred             EEEEEeEeCCc
Q psy8666          67 VYWCLARNSVG   77 (124)
Q Consensus        67 ~y~C~~~~~~~   77 (124)
                      .|.|.+.+..+
T Consensus        90 ~Y~C~~~~~~~  100 (114)
T 1u9k_A           90 LYRCVIYHPPN  100 (114)
T ss_dssp             EEEEEEECTTS
T ss_pred             EEEEEEecCCC
Confidence            99999988653

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.41  E-value=3.4e-06  Score=51.08  Aligned_cols=74  Identities=12%  Similarity=0.233  Sum_probs=44.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE--eec-cCC--CCCceEEEccC--CcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL--VET-SKS--DAKSQRVILPT--GSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~--~~~-~~~--~~~~~~~~~~~--~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+..|+.+.|.|...+.+ +.+.|||..  ..  +.. ...  ....+......  ........|.+++.+|.|.|.|.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   90 (207)
T 1ypz_E           12 SLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAA   90 (207)
T ss_dssp             EEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            577899999999987643 579999843  21  110 000  00011212211  122233456888999999999999


Q ss_pred             EeCC
Q psy8666          73 RNSV   76 (124)
Q Consensus        73 ~~~~   76 (124)
                      .+..
T Consensus        91 ~~~~   94 (207)
T 1ypz_E           91 DTWH   94 (207)
T ss_dssp             ECBC
T ss_pred             ecCC
Confidence            8863

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=98.41  E-value=1.5e-05  Score=44.07  Aligned_cols=74  Identities=20%  Similarity=0.370  Sum_probs=44.0

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--E--E-ee-ccC--------CCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--E--L-VE-TSK--------SDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~--~-~~-~~~--------~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|...+.+  ...+.|||..  .  . +. ...        .....+..... .........|.+++.+|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   90 (120)
T 1n4x_H           11 LKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNED   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEcCCCeEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCHHH
Confidence            567899999999987533  4679999843  1  1 11 000        00111222211 11122345578889999


Q ss_pred             CeEEEEEeEeC
Q psy8666          65 GGVYWCLARNS   75 (124)
Q Consensus        65 ~g~y~C~~~~~   75 (124)
                      .|.|.|.+.+.
T Consensus        91 sG~Y~C~~~~~  101 (120)
T 1n4x_H           91 TATYFCVRDRH  101 (120)
T ss_dssp             CEEEEEEEESS
T ss_pred             CEEEEEEEEcc
Confidence            99999998864

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.41  E-value=9.5e-06  Score=51.53  Aligned_cols=89  Identities=19%  Similarity=0.312  Sum_probs=50.6

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEee--ccCC----------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELVE--TSKS----------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~~--~~~~----------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|.+.+.+  .+.+.|+|+.  ....  ....          ....+..... .........|.+++.+|
T Consensus        33 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D  112 (291)
T 2gki_A           33 LVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSED  112 (291)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGGG
T ss_pred             EecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHHH
Confidence            467899999999988766  5789999853  2110  0000          0001111110 01112234567889999


Q ss_pred             CeEEEEEeEeCC-cc---ceeeeEEEEEEe
Q psy8666          65 GGVYWCLARNSV-GT---AVSRNATLQVAV   90 (124)
Q Consensus        65 ~g~y~C~~~~~~-~~---~~~~~~~l~v~~   90 (124)
                      .|.|.|.+.+.. +.   .......|.|..
T Consensus       113 sG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~  142 (291)
T 2gki_A          113 SAVYYCARGAYKRGYAMDYWGQGTSVTVSS  142 (291)
T ss_dssp             CEEEEEEEECGGGTTCEEEECCCEEEEECC
T ss_pred             CEEEEEEEeccccccccceeCCCcEEEEec
Confidence            999999999864 21   112234666655

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.41  E-value=9.6e-06  Score=50.42  Aligned_cols=89  Identities=15%  Similarity=0.238  Sum_probs=49.9

Q ss_pred             CEEecCCCEEEEEeeecc--CCCeEEEEeCC--E--EeeccCC----------CCCceEEEcc-CCcEEEEEEEcCCCcc
Q psy8666           1 MVVAKNEPVTLNCKAEGK--PEPTIEWYKDG--E--LVETSKS----------DAKSQRVILP-TGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~--p~p~v~w~k~g--~--~~~~~~~----------~~~~~~~~~~-~~~~~~~~~i~~~~~~   63 (124)
                      +.+.+|+.+.|.|.+.+.  +.+.+.|||..  .  .......          ....+..... .........|.+++.+
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (253)
T 3liz_H           10 GLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSE   89 (253)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            357789999999998763  35679999842  1  1110000          0001111111 1111223456888999


Q ss_pred             CCeEEEEEeEeCC---ccceeeeEEEEEE
Q psy8666          64 DGGVYWCLARNSV---GTAVSRNATLQVA   89 (124)
Q Consensus        64 d~g~y~C~~~~~~---~~~~~~~~~l~v~   89 (124)
                      |.|.|.|.+.+..   .........|.|.
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~  118 (253)
T 3liz_H           90 DTAMYYCTRDPAGRAWFAYWGQGTLVTVS  118 (253)
T ss_dssp             GCEEEEEEECCBTTTBCCEECCCEEEEEC
T ss_pred             hCEEEEEEEecCCcceeeEECCCEEEEEe
Confidence            9999999998752   1111334566664

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.41  E-value=7.3e-06  Score=50.31  Aligned_cols=88  Identities=15%  Similarity=0.256  Sum_probs=51.4

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCC--EE---ee-ccCCC-------CCceEEEcc-CCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDG--EL---VE-TSKSD-------AKSQRVILP-TGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g--~~---~~-~~~~~-------~~~~~~~~~-~~~~~~~~~i~~~~~~d~   65 (124)
                      .+.+|+.+.|.|.+.+.  +.+.+.|||..  ..   +. .....       ...+..... .........|.+++.+|.
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   91 (230)
T 1ypz_F           12 SRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDE   91 (230)
T ss_dssp             EEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGC
T ss_pred             EEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhhC
Confidence            56789999999998764  56789999842  21   11 00000       112222221 121223445688899999


Q ss_pred             eEEEEEeEeC---CccceeeeEEEEEE
Q psy8666          66 GVYWCLARNS---VGTAVSRNATLQVA   89 (124)
Q Consensus        66 g~y~C~~~~~---~~~~~~~~~~l~v~   89 (124)
                      |.|.|.+.+.   ........+.|.|.
T Consensus        92 G~Y~C~~~~~~~~~~~~~~~~~~L~V~  118 (230)
T 1ypz_F           92 AIYYCSYGEGSSGFHKVFAEGTKLIVI  118 (230)
T ss_dssp             SEEEEEECCTTTCCCCEECSCEEEEEE
T ss_pred             EEEEEEEECCCCCcccccCCCEEEEEe
Confidence            9999999874   11112234567775

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=98.41  E-value=1.6e-05  Score=44.41  Aligned_cols=74  Identities=20%  Similarity=0.393  Sum_probs=44.1

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EE---ee-cc-CC------CCCceEEEcc-CCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--EL---VE-TS-KS------DAKSQRVILP-TGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~---~~-~~-~~------~~~~~~~~~~-~~~~~~~~~i~~~~~~d~   65 (124)
                      .+.+|+++.|.|...+.+  ...+.|||..  ..   +. .. ..      ....+..... .........|.+++.+|.
T Consensus        11 ~~~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Ds   90 (124)
T 1yc7_A           11 SVQAGGSLRLSCAVSGSTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDT   90 (124)
T ss_dssp             EECTTCCEEEEEEEESCCSSCEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEecCCCEEEEEEEeCCCcCCCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCHHHC
Confidence            567899999999987543  4568999842  21   11 00 00      0011222111 111223455788899999


Q ss_pred             eEEEEEeEeC
Q psy8666          66 GVYWCLARNS   75 (124)
Q Consensus        66 g~y~C~~~~~   75 (124)
                      |.|.|.+.+.
T Consensus        91 g~Y~C~~~~~  100 (124)
T 1yc7_A           91 GMYYCQIQCG  100 (124)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEeC
Confidence            9999998875

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.40  E-value=4.2e-07  Score=54.81  Aligned_cols=73  Identities=12%  Similarity=0.104  Sum_probs=43.4

Q ss_pred             cCCCEEEEEeeeccCC--CeEEEEeCCEEeeccCCCCCceEEEccCCcEE--EEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           5 KNEPVTLNCKAEGKPE--PTIEWYKDGELVETSKSDAKSQRVILPTGSLF--FLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~--p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .|+.+.|.|.+.+.++  +.+.|+|+|..+..... ..........+...  ....+...+..|.|.|.|.+.|....
T Consensus       126 ~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~-~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          126 GTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVL-QSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             TTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE-EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             CCCCcEEEEEEeeecCCceEEEEEECCcccCCceE-eccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            4667999999987654  37999999988763100 00000011222222  12233334566799999999997643

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=98.40  E-value=3.1e-05  Score=42.78  Aligned_cols=74  Identities=19%  Similarity=0.368  Sum_probs=44.2

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEE---ee-cc--------CCCCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GEL---VE-TS--------KSDAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~---~~-~~--------~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|...+..  ...+.|||.  +..   +. ..        ......+..... .........|.+++.+|
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   90 (120)
T 1mfa_H           11 VARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSED   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEeCCCCEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeCCCCEEEEEECCCCHHH
Confidence            467899999999987533  467999973  221   11 00        000111222221 11222344578889999


Q ss_pred             CeEEEEEeEeC
Q psy8666          65 GGVYWCLARNS   75 (124)
Q Consensus        65 ~g~y~C~~~~~   75 (124)
                      .|.|.|.+.+.
T Consensus        91 sg~Y~C~~~~~  101 (120)
T 1mfa_H           91 SAVYYCTRGGH  101 (120)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEecC
Confidence            99999998875

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.38  E-value=3.8e-06  Score=46.11  Aligned_cols=88  Identities=17%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             CEEecCCCEEEEEeeecc--CCCeEEEEeCC-------EEe-eccCCC----CCceEEEccC-CcEEEEEEEcCCCccCC
Q psy8666           1 MVVAKNEPVTLNCKAEGK--PEPTIEWYKDG-------ELV-ETSKSD----AKSQRVILPT-GSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~--p~p~v~w~k~g-------~~~-~~~~~~----~~~~~~~~~~-~~~~~~~~i~~~~~~d~   65 (124)
                      +.+..|+++.|.|.....  ....+.|+|..       ..+ ......    ...+...... ........|.+++.+|.
T Consensus         7 v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   86 (115)
T 2or7_A            7 VQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDG   86 (115)
T ss_dssp             EEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGC
T ss_pred             EEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHHHC
Confidence            357789999999997643  35679999974       111 111000    0111111110 00012235678899999


Q ss_pred             eEEEEEeEeCCccceeeeEEEEEE
Q psy8666          66 GVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        66 g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      |.|.|.+....... ...+.|.|.
T Consensus        87 G~Y~C~v~~~~~~~-~~~v~L~V~  109 (115)
T 2or7_A           87 GPYCCVVEIPGAFH-FVDYMLEVK  109 (115)
T ss_dssp             EEEEEEECCTTSCE-EEEEEEEEE
T ss_pred             EEEEEEEECCCcee-EEEEEEEEc
Confidence            99999988754333 344555543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.38  E-value=6.1e-07  Score=54.52  Aligned_cols=70  Identities=23%  Similarity=0.341  Sum_probs=43.4

Q ss_pred             ecCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           4 AKNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      ..|+.+.|.|.+.+. |.| .+.|++++.......  . ... . ..+.  ......|......+ |.|.|.+.|..+..
T Consensus       138 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~--~-~~~-~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  211 (220)
T 1pz5_B          138 TSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRT--V-SSV-L-QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKV  211 (220)
T ss_dssp             SCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEE--C-CCE-E-ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTE
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEE--c-CCc-c-cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccE
Confidence            468899999999887 888 999999876310000  0 000 0 1111  11223344445545 99999999998865

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.38  E-value=1e-07  Score=58.36  Aligned_cols=72  Identities=11%  Similarity=0.153  Sum_probs=38.4

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .|+.+.|.|.+.+. |.+ .+.|+|+|..+..... .........++.  ......|...+.+|.|.|.|.+.|...
T Consensus       148 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          148 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL-NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             HTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE-EEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             cCCceEEEEEEccccCCceEEEEEECCeeCCCCce-EecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            48889999999885 444 6999999987653100 000000011222  112233444466789999999999643

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.37  E-value=2.8e-07  Score=56.51  Aligned_cols=70  Identities=19%  Similarity=0.267  Sum_probs=40.9

Q ss_pred             ecCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           4 AKNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      ..|+.+.|.|.+.+. |.| .+.|++++..+....  . ... . ..+.  ......|...+..| |.|.|.+.|..+..
T Consensus       134 ~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~--~-~~~-~-~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  207 (227)
T 1mju_H          134 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT--F-PAV-L-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  207 (227)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE--C-CCE-E-ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTE
T ss_pred             cCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEE--C-Cce-e-cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCc
Confidence            468899999999875 777 899999886532100  0 011 1 1121  12233445555567 99999999976543

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=98.37  E-value=8.3e-06  Score=44.90  Aligned_cols=74  Identities=19%  Similarity=0.357  Sum_probs=44.0

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EE---ee-ccC--C------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--EL---VE-TSK--S------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~---~~-~~~--~------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|...+..  ...+.|||..  ..   +. ...  .      ....+..... .........|.+++.+|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   90 (117)
T 2yc1_A           11 LVQPGGSLRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMNSLRAED   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEcCCCeEEEEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEECCCCHHH
Confidence            467899999999987533  4679999842  21   11 000  0      0011222111 11222345578889999


Q ss_pred             CeEEEEEeEeC
Q psy8666          65 GGVYWCLARNS   75 (124)
Q Consensus        65 ~g~y~C~~~~~   75 (124)
                      .|.|.|.+.+.
T Consensus        91 sg~Y~C~~~~~  101 (117)
T 2yc1_A           91 TAVYYCARGGV  101 (117)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEEeC
Confidence            99999998764

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.37  E-value=2.3e-06  Score=47.97  Aligned_cols=87  Identities=9%  Similarity=0.139  Sum_probs=49.1

Q ss_pred             EEecCCCEEEEEeeecc---CCCeEEEEeCC--E---Eeec---cC---C--CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGK---PEPTIEWYKDG--E---LVET---SK---S--DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~---p~p~v~w~k~g--~---~~~~---~~---~--~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|...+.   ....+.|||..  .   .+..   ..   .  ....+..... .........|.+++.+|
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~D   90 (126)
T 2h32_A           11 SSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPED   90 (126)
T ss_dssp             EEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCCChhH
Confidence            57789999999998753   24679999842  1   1110   00   0  0011222211 11122345678889999


Q ss_pred             CeEEEEEeEeCCccceeeeEEEEEE
Q psy8666          65 GGVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      .|.|.|.+.+..+.. ...+.|.|.
T Consensus        91 sG~Y~C~~~~~~~~~-~~~t~l~v~  114 (126)
T 2h32_A           91 EAMYYCAMGARSSEK-EEREREWEE  114 (126)
T ss_dssp             CEEEEEEEECSCCCC-CCTTCC---
T ss_pred             CEEEEEEEEcCCCCc-ceeEEEeec
Confidence            999999998866544 334444443

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=98.37  E-value=1.3e-05  Score=44.53  Aligned_cols=74  Identities=20%  Similarity=0.377  Sum_probs=44.9

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCC--EE---ee-ccC--C------CCCceEEEccC-CcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDG--EL---VE-TSK--S------DAKSQRVILPT-GSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g--~~---~~-~~~--~------~~~~~~~~~~~-~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|...+.  ....+.|||..  ..   +. ...  .      ....+.....+ ........|.+++.+|
T Consensus        13 ~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   92 (123)
T 2p45_B           13 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMDSLKPED   92 (123)
T ss_dssp             EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEESSCCGGG
T ss_pred             EEeCCCCEEEEEEecCccCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEECCCCHHH
Confidence            56789999999998753  35679999842  21   11 000  0      01122222221 1223345678889999


Q ss_pred             CeEEEEEeEeC
Q psy8666          65 GGVYWCLARNS   75 (124)
Q Consensus        65 ~g~y~C~~~~~   75 (124)
                      .|.|.|.+.+.
T Consensus        93 sg~Y~C~~~~~  103 (123)
T 2p45_B           93 TATYYCAAGGY  103 (123)
T ss_dssp             CEEEEEEESSC
T ss_pred             CEEEEEEEEec
Confidence            99999998763

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=98.36  E-value=1.1e-05  Score=44.36  Aligned_cols=75  Identities=16%  Similarity=0.280  Sum_probs=44.7

Q ss_pred             CEEecCCCEEEEEeeeccC--CCeEEEEeCC--EE---ee-ccC-------CCCCceEEEccC-CcEEEEEEEcCCCccC
Q psy8666           1 MVVAKNEPVTLNCKAEGKP--EPTIEWYKDG--EL---VE-TSK-------SDAKSQRVILPT-GSLFFLRVVHGKKEQD   64 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~---~~-~~~-------~~~~~~~~~~~~-~~~~~~~~i~~~~~~d   64 (124)
                      +.+.+|+++.|.|...+.+  ...+.|||..  ..   +. ...       .....+.....+ ........|.+++.+|
T Consensus        10 ~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   89 (116)
T 1a2y_B           10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEEeCCCcEEEEEEEcCCCcCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHH
Confidence            3577899999999987543  4679999842  21   11 000       000112222111 1122345568889999


Q ss_pred             CeEEEEEeEeC
Q psy8666          65 GGVYWCLARNS   75 (124)
Q Consensus        65 ~g~y~C~~~~~   75 (124)
                      .|.|.|.+.+.
T Consensus        90 sg~Y~C~~~~~  100 (116)
T 1a2y_B           90 TARYYCARERD  100 (116)
T ss_dssp             CEEEEEEEESS
T ss_pred             CEEEEEEEecC
Confidence            99999998864

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.35  E-value=3.2e-05  Score=43.14  Aligned_cols=90  Identities=12%  Similarity=0.191  Sum_probs=52.2

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEeCCE-----Eeec-cCCC---CCceEEEc-cCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYKDGE-----LVET-SKSD---AKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k~g~-----~~~~-~~~~---~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      .+.+|+.+.|.|...... ...+.|||...     .+.. ....   ...+.... ......+...|.+++.+|.|.|.|
T Consensus        13 ~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C   92 (124)
T 2nms_A           13 NGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWC   92 (124)
T ss_dssp             EEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHCEEEEE
Confidence            467899999999986543 23589998532     1111 1000   01111121 111223345578889999999999


Q ss_pred             EeEeCCccceeeeEEEEEEeee
Q psy8666          71 LARNSVGTAVSRNATLQVAVVI   92 (124)
Q Consensus        71 ~~~~~~~~~~~~~~~l~v~~~~   92 (124)
                      ....... .....+.|.|...|
T Consensus        93 ~~~~~~~-~~~~~v~L~V~~~~  113 (124)
T 2nms_A           93 GIEKTGN-DLGVTVQVTIDPAP  113 (124)
T ss_dssp             EEEETTE-EEEEEEEEEEECCC
T ss_pred             EEEcCCC-CccEEEEEEEeCCC
Confidence            9887543 33445666665543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.35  E-value=2.1e-07  Score=56.49  Aligned_cols=70  Identities=21%  Similarity=0.296  Sum_probs=43.1

Q ss_pred             ecCCCEEEEEeeec-cCCC-eEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           4 AKNEPVTLNCKAEG-KPEP-TIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         4 ~~G~~~~l~C~~~~-~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      ..|+.+.|.|.+.+ .|.| .+.|+|++..+....    ...... .+.  ......|.. ...|.|.|.|.+.|..+..
T Consensus       137 ~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~----~~~~~~-~~~~~~~s~L~i~~-~~~d~g~Y~C~a~n~~~~~  210 (219)
T 1c1e_H          137 QTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT----FPAVLQ-SDLYTLSSSVTVPS-SPRPSETVTCNVAHPASST  210 (219)
T ss_dssp             CCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE----CCCEES-SSCEEEEEEEEEES-SSTTTSCCEEEEEEGGGTE
T ss_pred             ccCCeEEEEEEcccccCCCeEEEEEeCCcccceEe----cCCccc-CCeEEEEEEEEEec-ccCCCCEEEEEEEeCCCCc
Confidence            46889999999988 7998 999999987532100    000011 122  111222322 3335699999999977654

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=98.35  E-value=2.7e-05  Score=43.09  Aligned_cols=74  Identities=20%  Similarity=0.335  Sum_probs=43.9

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EEe---e-ccCC--------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--ELV---E-TSKS--------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~~---~-~~~~--------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+.+.|.|...+.+  ...+.|||..  ...   . ....        ....+..... .........|.+++.+|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   90 (121)
T 1j05_H           11 LVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEeCCCcEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCCHHH
Confidence            467899999999987543  4679999842  211   1 0000        0001111111 11112335578889999


Q ss_pred             CeEEEEEeEeC
Q psy8666          65 GGVYWCLARNS   75 (124)
Q Consensus        65 ~g~y~C~~~~~   75 (124)
                      .|.|.|.+.+.
T Consensus        91 sg~Y~C~~~~~  101 (121)
T 1j05_H           91 TAVYYCAPFGY  101 (121)
T ss_dssp             CEEEEEEEEBT
T ss_pred             CEEEEEEEEcC
Confidence            99999998875

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.35  E-value=2.6e-06  Score=52.38  Aligned_cols=71  Identities=14%  Similarity=0.276  Sum_probs=43.1

Q ss_pred             cC-CCEEEEEeeecc-CCC-eEEEEe-CCEEeeccCCCCCceEEEccCCcE--EEEEEEcCCCc--cCCeEEEEEeEeCC
Q psy8666           5 KN-EPVTLNCKAEGK-PEP-TIEWYK-DGELVETSKSDAKSQRVILPTGSL--FFLRVVHGKKE--QDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G-~~~~l~C~~~~~-p~p-~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~--~d~g~y~C~~~~~~   76 (124)
                      .| +.+.|.|.+.+. |.| .+.|++ +|..+... ... ... . ..+..  .....|.....  .|.|.|.|.+.|..
T Consensus       139 ~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~-~~~-~~~-~-~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~  214 (232)
T 1dn0_B          139 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISST-RGF-PSV-L-RGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPN  214 (232)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCE-EEC-CCE-E-ETTEEEEEEEEEECTTCC---CCCEEEEEEECTT
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeE-EEC-Ccc-c-cCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCC
Confidence            56 889999999876 777 899999 88776421 000 000 0 11221  12233444444  67899999999987


Q ss_pred             ccc
Q psy8666          77 GTA   79 (124)
Q Consensus        77 ~~~   79 (124)
                      +..
T Consensus       215 ~~~  217 (232)
T 1dn0_B          215 GNK  217 (232)
T ss_dssp             CCE
T ss_pred             CCc
Confidence            764

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=98.35  E-value=3.8e-06  Score=50.55  Aligned_cols=73  Identities=19%  Similarity=0.279  Sum_probs=43.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCC--EE---ee-ccCC---CCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VE-TSKS---DAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~-~~~~---~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.+.|.|...+.....+.|||..  ..   +. ....   ....+..... .........|..++.+|.|.|.|.
T Consensus        12 ~v~~G~~v~L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~   91 (194)
T 1lp9_E           12 TLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCA   91 (194)
T ss_dssp             EEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEE
T ss_pred             EEecCCCEEEEEEeCCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCcccCeeEEEE
Confidence            5678999999999877666789999843  21   11 1000   0011222211 000112235677899999999999


Q ss_pred             eEe
Q psy8666          72 ARN   74 (124)
Q Consensus        72 ~~~   74 (124)
                      +.+
T Consensus        92 ~~~   94 (194)
T 1lp9_E           92 LFL   94 (194)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            986

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=98.34  E-value=7.7e-06  Score=49.54  Aligned_cols=89  Identities=13%  Similarity=0.237  Sum_probs=52.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE---eec-cCCC---CCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VET-SKSD---AKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~~-~~~~---~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.+.|.|...+.....+.|||.  |..   +.. ....   ...+.... ..........|.+++.+|.|.|.|.
T Consensus        11 ~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca   90 (199)
T 3gsn_A           11 HVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCA   90 (199)
T ss_dssp             EEETTCCCEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCGGGCEEEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCcccCCccEEEE
Confidence            578899999999987655568999984  322   111 0000   01111111 1222334456788899999999999


Q ss_pred             eEeCCccceeeeEEEEEEe
Q psy8666          72 ARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        72 ~~~~~~~~~~~~~~l~v~~   90 (124)
                      +.............|.|..
T Consensus        91 ~~~~~~~~fG~GT~L~V~~  109 (199)
T 3gsn_A           91 RNTGNQFYFGTGTSLTVIP  109 (199)
T ss_dssp             EESSSCEEECSCEEEEEEC
T ss_pred             EcccccccCCCCEEEEEec
Confidence            8653222223445666655

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.34  E-value=1.5e-05  Score=49.15  Aligned_cols=74  Identities=18%  Similarity=0.306  Sum_probs=44.8

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEeec--cC-CC--------CCceEEEcc-CCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVET--SK-SD--------AKSQRVILP-TGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~~--~~-~~--------~~~~~~~~~-~~~~~~~~~i~~~~~~d~   65 (124)
                      .+.+|+.+.|.|.+.+.|  .+.+.|+|+  +..+..  .. ..        ...+..... .........|..++.+|.
T Consensus       133 ~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~  212 (242)
T 2znx_A          133 LVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDT  212 (242)
T ss_dssp             EECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcC
Confidence            356799999999998775  478999984  332210  00 00        011111111 111122345678899999


Q ss_pred             eEEEEEeEeC
Q psy8666          66 GVYWCLARNS   75 (124)
Q Consensus        66 g~y~C~~~~~   75 (124)
                      |.|.|.+.|.
T Consensus       213 G~Y~C~a~~~  222 (242)
T 2znx_A          213 ATYYCANXDG  222 (242)
T ss_dssp             EEEEEEETTS
T ss_pred             EEEEEeccCC
Confidence            9999999873

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=98.34  E-value=3e-05  Score=43.36  Aligned_cols=75  Identities=20%  Similarity=0.332  Sum_probs=43.7

Q ss_pred             CEEecCCCEEEEEeeeccCC---CeEEEEeC--CEE---ee-cc--C-----CCCCceEEEc-cCCcEEEEEEEcCCCcc
Q psy8666           1 MVVAKNEPVTLNCKAEGKPE---PTIEWYKD--GEL---VE-TS--K-----SDAKSQRVIL-PTGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~---p~v~w~k~--g~~---~~-~~--~-----~~~~~~~~~~-~~~~~~~~~~i~~~~~~   63 (124)
                      +.+.+|+.+.|.|...+.+.   ..+.||+.  +..   +. ..  .     .....+.... ..........|.+++.+
T Consensus        10 ~~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   89 (127)
T 3cx5_J           10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             EEEcCCCCEEEEEEEeCcccCCCcEEEEEEECCCCCcEEEEEEeCCCCeeECcccCCcEEEEEeCCCCEEEEEECCCCHH
Confidence            35778999999999876432   67999983  221   11 00  0     0000111111 11122234557888999


Q ss_pred             CCeEEEEEeEeC
Q psy8666          64 DGGVYWCLARNS   75 (124)
Q Consensus        64 d~g~y~C~~~~~   75 (124)
                      |.|.|.|.+.+.
T Consensus        90 Dsg~Y~C~~~~~  101 (127)
T 3cx5_J           90 DTATYYCARSEY  101 (127)
T ss_dssp             GCEEEEEEEEEE
T ss_pred             HCEEEEEEEEeC
Confidence            999999988763

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=98.34  E-value=4.7e-06  Score=50.82  Aligned_cols=89  Identities=19%  Similarity=0.309  Sum_probs=49.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--ccCCC----CCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--TSKSD----AKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~~~~~----~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|...+.....+.|||.  |+.+.  .....    ...+.... ..........|..++.+|.|.|.|.+
T Consensus        13 ~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~DsG~Y~Ca~   92 (208)
T 4ei6_A           13 SVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAA   92 (208)
T ss_dssp             EEETTCCEECEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCGGGCEEEEEEE
T ss_pred             EEECCCCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcccCCCcEEEEE
Confidence            578899999999987654557899984  22211  00000    00111111 01111123346778999999999998


Q ss_pred             EeCC----ccceeeeEEEEEEe
Q psy8666          73 RNSV----GTAVSRNATLQVAV   90 (124)
Q Consensus        73 ~~~~----~~~~~~~~~l~v~~   90 (124)
                      ....    .........|.|..
T Consensus        93 ~~~~~~~~~~~fG~GT~L~V~~  114 (208)
T 4ei6_A           93 SEQNNYAQGLTFGLGTRVSVFP  114 (208)
T ss_dssp             EECCSSCCCCEECCCEEEEEEC
T ss_pred             ecCCCccccccCCCCEEEEEeC
Confidence            7521    12223455777755

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.33  E-value=6.8e-07  Score=55.01  Aligned_cols=71  Identities=10%  Similarity=0.078  Sum_probs=46.4

Q ss_pred             ecCCCEEEEEeeecc-CC-C-eEEEEeCCEEe-eccCCCCCceEEEccCCcE--EEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           4 AKNEPVTLNCKAEGK-PE-P-TIEWYKDGELV-ETSKSDAKSQRVILPTGSL--FFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~-p-~v~w~k~g~~~-~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      ..|+.+.|.|.+.+. |. | .+.|+++|..+ ...    ........++..  .....|..++..|.|.|.|.+.+..+
T Consensus        26 ~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~----~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~  101 (231)
T 2w59_A           26 YISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPD----PMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEEL  101 (231)
T ss_dssp             HTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCC----CCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred             ccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccc----cccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCC
Confidence            479999999999885 64 5 89999998766 211    011111122221  22334555677899999999999765


Q ss_pred             c
Q psy8666          78 T   78 (124)
Q Consensus        78 ~   78 (124)
                      .
T Consensus       102 ~  102 (231)
T 2w59_A          102 P  102 (231)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.33  E-value=4.3e-06  Score=56.09  Aligned_cols=71  Identities=21%  Similarity=0.287  Sum_probs=45.5

Q ss_pred             ecCCCEEEEEeeeccCCC----eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCC
Q psy8666           4 AKNEPVTLNCKAEGKPEP----TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSV   76 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p----~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~   76 (124)
                      ..|+.+.|.|.+.+.|++    .+.|+|++..+....   .........+.+.+... ..+...|   .|.|.|.+.|..
T Consensus       262 ~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~---~~~~~~~~~g~~~~~~~-l~i~~~d~~d~G~Y~C~a~n~~  337 (457)
T 1hzh_H          262 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK---TKPREEQYNSTYRVVSV-LTVLHQDWLNGKEYKCKVSNKA  337 (457)
T ss_dssp             CTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCE---EEEEEECTTSCEEEEEE-ECCCHHHHHHTCCEEEEEECTT
T ss_pred             ccCCceEEEEEEEcccCCCCceEEEEEeCCccccccc---cccceecCCCcEEEEEE-EEECHHHccCCCcEEEEEeCCC
Confidence            459999999999987543    899999998765210   01112233444433332 2234555   999999999865


Q ss_pred             cc
Q psy8666          77 GT   78 (124)
Q Consensus        77 ~~   78 (124)
                      +.
T Consensus       338 ~~  339 (457)
T 1hzh_H          338 LP  339 (457)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.33  E-value=1.8e-06  Score=51.23  Aligned_cols=56  Identities=21%  Similarity=0.331  Sum_probs=40.3

Q ss_pred             CCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           6 NEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         6 G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      +..+.|.|.+ .+ |.|.+.|++++..+..           .....+.  ..    ...|.|.|.|.+.|..+..
T Consensus       115 ~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~-----------~~~~~l~--~~----~~~d~g~Y~C~a~N~~~~~  171 (180)
T 2dru_A          115 CSNATLTCEVLEG-TDVELKLYQGKEHLRS-----------LRQKTMS--YQ----WTNLRAPFKCKAVNRVSQE  171 (180)
T ss_dssp             GGGTEEEEECSSC-TTCEEEEEETTEEEEE-----------ESSSEEE--EE----CSCCSSCEEEEEEETTEEE
T ss_pred             CCCEEEEEEeCCC-CCCEEEEEECCeECcC-----------CCCCEEE--EE----EhhcCccEEEEEecCcCcc
Confidence            4558899999 56 9999999999987641           1111221  11    2678999999999998765

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.32  E-value=4.6e-07  Score=56.26  Aligned_cols=73  Identities=12%  Similarity=0.163  Sum_probs=44.2

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .|+.+.|.|.+.+. |.+ .+.|+|+|..+..... .........++.  ......|..++..|.|.|.|.+.|....
T Consensus       164 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~-~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          164 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL-NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             HHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEE-EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCee-eecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            47789999999874 544 6999999987653100 000000111222  1122334455678899999999997544

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=98.32  E-value=1.3e-05  Score=46.33  Aligned_cols=88  Identities=19%  Similarity=0.370  Sum_probs=51.7

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeC-----CEEee---c--c------CCCC-CceEEEc--cCCcEEEEEEEcCCC
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKD-----GELVE---T--S------KSDA-KSQRVIL--PTGSLFFLRVVHGKK   61 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~-----g~~~~---~--~------~~~~-~~~~~~~--~~~~~~~~~~i~~~~   61 (124)
                      .+.+|+.+.|.|...+. ....+.||+.     +..+.   .  .      .... ..++...  .... .....|.+++
T Consensus        12 ~v~~G~svtL~C~~s~~~~~~~v~Wyrq~~g~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~-~~sL~I~~l~   90 (150)
T 3dmm_D           12 LVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSR-RPFLSIMNVK   90 (150)
T ss_dssp             EEETTSCEEEEEECCCSSCCCEEEEEEEECCSSCCEEEEEEEEETTTEEEECTTTTTTCCEEEESTTSS-SCEEEESSCC
T ss_pred             EEeCCCcEEEEEEecCCCCCceEEEEEeCCCCCCCccEEEEEEecCCceEeCCCCccCcEEEEEcCCCC-EEEEEECCCC
Confidence            57889999999998764 5667999985     22211   0  0      0000 1222222  2212 2234568889


Q ss_pred             ccCCeEEEEEeEeCCccceeeeEEEEEEe
Q psy8666          62 EQDGGVYWCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        62 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      .+|.|.|.|.+.............|.|..
T Consensus        91 ~~Dsg~Y~C~~~~~~~~~fG~GT~L~V~~  119 (150)
T 3dmm_D           91 PEDSDFYFCATVGSPKMVFGTGTKLTVVD  119 (150)
T ss_dssp             GGGCEEEEEEEECSSCEEECCCEEEEEES
T ss_pred             hhhCEEEEEEEecCCcceECCCEEEEEeC
Confidence            99999999998764322233455666654

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=98.32  E-value=1.5e-05  Score=44.26  Aligned_cols=72  Identities=19%  Similarity=0.429  Sum_probs=43.0

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeCC--EE---ee-ccCC--------CCCceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKDG--EL---VE-TSKS--------DAKSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~g--~~---~~-~~~~--------~~~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+.+|+++.|.|...+.+  ...+.|||..  ..   +. ....        ....+..... .........|.+++.+|
T Consensus        13 ~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   92 (121)
T 2xt1_B           13 LVQAGGSLRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQMNDLKPED   92 (121)
T ss_dssp             EEETTCCEEEEEEEESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEeCCCCEEEEEEecCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEECCCCHHH
Confidence            577899999999987543  5679999842  21   11 0000        0011221111 11122345578889999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .|.|.|.+.
T Consensus        93 sG~Y~C~~~  101 (121)
T 2xt1_B           93 TAMYYCKAS  101 (121)
T ss_dssp             CEEEEEEET
T ss_pred             CEEEEEEEE
Confidence            999999886

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.32  E-value=2.7e-06  Score=51.92  Aligned_cols=72  Identities=15%  Similarity=0.290  Sum_probs=44.4

Q ss_pred             ecCCCEEEEEeeecc-CCC-eEEEEe-CCEEeeccCCCCCceEEEccCCcE--EEEEEEcCCCc--cCCeEEEEEeEeCC
Q psy8666           4 AKNEPVTLNCKAEGK-PEP-TIEWYK-DGELVETSKSDAKSQRVILPTGSL--FFLRVVHGKKE--QDGGVYWCLARNSV   76 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~p-~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~--~d~g~y~C~~~~~~   76 (124)
                      ..|+.+.|.|.+.+. |.| .+.|++ +|..+... ... ..  ....+..  .....+.....  .|.|.|.|.+.|..
T Consensus       139 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~-~~~-~~--~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~  214 (223)
T 1dee_B          139 NPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISST-RGF-PS--VLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPN  214 (223)
T ss_dssp             CSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCE-EEC-CC--EEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTT
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEeEccCCCcccee-EEC-Cc--cccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCC
Confidence            367889999999877 777 899999 88765420 000 00  0011221  11223333333  56899999999988


Q ss_pred             ccc
Q psy8666          77 GTA   79 (124)
Q Consensus        77 ~~~   79 (124)
                      +..
T Consensus       215 ~~~  217 (223)
T 1dee_B          215 GNK  217 (223)
T ss_dssp             CCE
T ss_pred             CCC
Confidence            765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	7e-17
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-15
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	4e-15
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-14
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	4e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-13
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	7e-13
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	7e-13
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-11
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	5e-11
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	6e-11
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-10
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-10
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-10
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-10
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	6e-10
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	8e-10
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	9e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-09
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-09
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-09
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-09
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	5e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	5e-08
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	1e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	1e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	3e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	8e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-06
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	2e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-06
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	3e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	7e-06
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	9e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	9e-06
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	9e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	3e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	5e-05
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	1e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	2e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	2e-04
d1ucta2	96	b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (C	5e-04
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	5e-04
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	6e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	7e-04
d1k5nb_	100	b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapi	9e-04
d1fp5a2	105	b.1.1.2 (A:439-543) Immunoglobulin heavy chain eps	0.002
d1olla2	93	b.1.1.4 (A:96-188) Ligand binding domain of NK rec	0.002
d1jbja1	86	b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fra	0.003

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 7e-17
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + V++ +PV LNC  EG  EP I+W KD         +     + +          +   
Sbjct: 6  LTVSQGQPVKLNCSVEGMEEPDIQWVKD----GAVVQNLDQLYIPVSEQHWIGFLSLKSV 61

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVA 89
          +  D G YWC   +   T +S+   L V 
Sbjct: 62 ERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.2 bits (155), Expect = 2e-15
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 6  NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDG 65
           E VTL C+A   P  T  W  +G  ++         R  L  G L     V     +D 
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDS----RYRLVAGDLVISNPVK---AKDA 74

Query: 66 GVYWCLARNSVGTAVSRNATLQ 87
          G Y C+A N+ GT VSR A+L+
Sbjct: 75 GSYQCVATNARGTVVSREASLR 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 4e-15
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           V     V   C A G P PT+ W K+G+  +         +V     SL    ++    
Sbjct: 16 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-HRIGGYKVRNQHWSL----IMESVV 70

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
            D G Y C+  N  G+  +    L V
Sbjct: 71 PSDKGNYTCVVENEYGSI-NHTYHLDV 96

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 2e-14
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKS-------DAKSQRVILPTGSLFF 53
                   V   CK     +P I+W K  E   +                 +  T     
Sbjct: 15  ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIE 74

Query: 54  LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           +  +     +D G Y CLA NS+G +   +A L V
Sbjct: 75  VLYIRNVTFEDAGEYTCLAGNSIGIS-FHSAWLTV 108

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.4 bits (148), Expect = 4e-14
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                + VTL C A+G PEPT+ W KDGE +E  + D +       +  L         
Sbjct: 15 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTI----RNV 70

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           + D   Y C+A N  G     +  L+V
Sbjct: 71 DKNDEAEYVCIAENKAGEQ-DASIHLKV 97

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 59.8 bits (144), Expect = 9e-14
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          +VV + + VT+ CK  G P P + W  + + +          R  +    L    V    
Sbjct: 13 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-------RATVTDSGLVIKGV---- 61

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
          K  D G Y C A N  G        +QV
Sbjct: 62 KNGDKGYYGCRATNEHGDK-YFETLVQV 88

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 3e-13
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V   E V L  K  G    T  W K  + ++ S         +  + +   L ++  +
Sbjct: 10 QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-----EHMKVENSENGSKLTILAAR 64

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
          +E   G Y  L  N +G+       L V
Sbjct: 65 QE-HCGCYTLLVENKLGSR-QAQVNLTV 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.9 bits (139), Expect = 7e-13
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 13/88 (14%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                + VTL C A G P P I+W K           +++ + +     L    V    
Sbjct: 15 TYALTGQMVTLECFAFGNPVPQIKWRKL--------DGSQTSKWLSSEPLLHIQNV---- 62

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +D G Y C A N  G   +    + +
Sbjct: 63 DFEDEGTYECEAENIKGRD-TYQGRIII 89

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 58.0 bits (139), Expect = 7e-13
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          M+    +   + C     P     ++K+G+ V  +  D  ++        L F       
Sbjct: 13 MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT---- 68

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +D GVY C   N VG     +  L V
Sbjct: 69 LPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-11
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          M V + E    +C  +G+P PT+ W + G+++ TS     +      T        +   
Sbjct: 9  MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST------FEISSV 62

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
          +  D G Y  +  NS G       TL +
Sbjct: 63 QASDEGNYSVVVENSEGKQ-EAEFTLTI 89

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-11
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + V   +  T  C A G+       +  G  V  +              + F +      
Sbjct: 11 VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNT--- 67

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
           ++D G Y C+ R   G  +S  A L V
Sbjct: 68 TKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 6e-11
 Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 2/89 (2%)

Query: 1   MVVAKNEPVTLNCKAEGKPE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
             +   +P  L C  +     P + W K        K + +           FF+     
Sbjct: 13  HSILAGDPFELECPVKYCANRPHVTWCKLNGTT-CVKLEDRQTSWKEEKNISFFILHFEP 71

Query: 60  KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
               D G Y C A        S + TL V
Sbjct: 72  VLPNDNGSYRCSANFQSNLIESHSTTLYV 100

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 1e-10
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 6/88 (6%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V +        +  GKP+P  EWYK+G  +E        +             V+   
Sbjct: 14 QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER-----SDRIYWYWPEDNVCELVIRDV 68

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +D       A N  G   S +A L V
Sbjct: 69 TGEDSASIMVKAINIAGETSS-HAFLLV 95

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-10
 Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 8/97 (8%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFF------- 53
           M V     + L C   G+      W  +G +++            +   +          
Sbjct: 12  MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 71

Query: 54  LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           L +   +       + C A+N+ G   +    L   V
Sbjct: 72  LNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIYPV 107

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.0 bits (121), Expect = 3e-10
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V + +     C+      P + W+KD       +   +S + +       +   ++  
Sbjct: 11 TEVGEGQSANFYCRVIASSPPVVTWHKD------DRELKQSVKYMKRYNGNDYGLTINRV 64

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
          K  D G Y   A+NS GT       L V
Sbjct: 65 KGDDKGEYTVRAKNSYGTK-EEIVFLNV 91

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 4e-10
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQR--VILPTGSLFFLRVVH 58
             + + E   L CK+E  P  T   +      E       S+    +  +     L + +
Sbjct: 12  EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN 71

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
              E D G Y C   +S G+      TL+V
Sbjct: 72  LNMEADPGQYRCNGTSSKGSD-QAIITLRV 100

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 4e-10
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 24/111 (21%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKS----------------------- 37
           +VV     + L+    G P PT+ W K       + +                       
Sbjct: 19  IVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLL 78

Query: 38  DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
                RV + T     +  V G +++D GVY    +N VG     N T++V
Sbjct: 79  CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKV 128

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 5e-10
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 5   KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK-KEQ 63
           +     +    +G+P P++ W  +G ++  +              ++    +   +    
Sbjct: 14  EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 73

Query: 64  DGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
           + G Y  LA N  G A S +         F  +
Sbjct: 74  NNGNYTLLAANPFGQA-SASIMAAFMDNPFEFN 105

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 6e-10
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 3   VAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETS--KSDAKSQRVILPTGSLFFLRVVHG 59
           V       L C   +G P     W+KDG  + T+  K                   +   
Sbjct: 14  VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 73

Query: 60  KKEQDGGVYWCLARNSVGTAV-SRNATLQVAVV 91
               D G Y+C A+N  GTA+ S  A +    +
Sbjct: 74  VTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 106

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 50.0 bits (118), Expect = 8e-10
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          ++  +N P  L C  EG  +     +K     ++      +  +    GSL FLR     
Sbjct: 12 VLFRENNPTVLECIIEGNDQGVKYSWKKDG--KSYNWQEHNAALRKDEGSLVFLRPQA-- 67

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
             D G Y C A    G A SR  + + 
Sbjct: 68 --SDEGHYQCFAETPAGVASSRVISFRK 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 9e-10
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 1  MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
          +V + NE     C     + + TI WYKD    +T  S  ++ R+      L+F+     
Sbjct: 12 LVSSANEIDVRPCPLNPNEHKGTITWYKDDS--KTPVSTEQASRIHQHKEKLWFVPA--- 66

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           K +D G Y+C+ RNS         + + 
Sbjct: 67 -KVEDSGHYYCVVRNSSYCL-RIKISAKF 93

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.1 bits (116), Expect = 2e-09
 Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 8/90 (8%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
              + E   + C       PTI W   G        D   ++ +           + G 
Sbjct: 11 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGR-------DVILKKDVRFIVLSNNYLQIRGI 63

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
          K+ D G Y C  R            +QV V
Sbjct: 64 KKTDEGTYRCEGRILAR-GEINFKDIQVIV 92

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.7 bits (115), Expect = 2e-09
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                  +  +C A GKP P + W +DG+ + +      S   +               
Sbjct: 11 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGEL----------RFSKL 60

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +D G+Y C+A N  GT    +A L V
Sbjct: 61 VLEDSGMYQCVAENKHGTV-YASAELTV 87

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-09
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 16/89 (17%)

Query: 1  MVVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
          + V  N P  L+C+A       TI W++    +                       V++ 
Sbjct: 11 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------------SPSVLNV 55

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
                 ++ C A N  G A SR AT+ +
Sbjct: 56 TGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 49.1 bits (116), Expect = 2e-09
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
           M V +      +CK EG P+P + W+KD   V+ S+                    +   
Sbjct: 18  MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD-----EEGNCSLTISEV 72

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
              D   Y C A NS+G A    A L V  +
Sbjct: 73  CGDDDAKYTCKAVNSLGEATC-TAELLVETM 102

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 3e-09
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 9/94 (9%)

Query: 3   VAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSK----SDAKSQRVILPTGSLFFLRVV 57
                   L C   +G P     W+KDG ++ T+     + + S  V+ PT        +
Sbjct: 14  ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 73

Query: 58  HGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
                 D G Y C ARN  GT ++ +  +++  V
Sbjct: 74  ---SASDTGEYSCEARNGYGTPMT-SNAVRMEAV 103

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 4e-08
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYK--DGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
                 E   + C     P P    +   +  L   +      + +    G +  L + +
Sbjct: 16  QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISN 75

Query: 59  GKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
             +     +Y C A NS G+  +    L+ 
Sbjct: 76  IVRADFQTIYNCTAWNSFGSD-TEIIRLKE 104

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 5e-08
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
                E V L C+   + +  ++W+K+GE +          RV      L    ++ G 
Sbjct: 10 TTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL----IIEGA 64

Query: 61 KEQDGGVYWCLARNSVGTA 79
           + D   Y  +      +A
Sbjct: 65 TKADAAEYSVMTTGGQSSA 83

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 5e-08
 Identities = 22/89 (24%), Positives = 27/89 (30%), Gaps = 13/89 (14%)

Query: 1  MVVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
            V     VT  C A+   P  T+ W +       S       R +   G L    V   
Sbjct: 12 QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-------RAMDFNGILTIRNV--- 61

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           +  D G Y C   N         ATL V
Sbjct: 62 -QPSDAGTYVCTGSNMFAMD-QGTATLHV 88

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-07
 Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 15/88 (17%)

Query: 2  VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             + E + L C +   KP   + ++++G+  + S                     +   
Sbjct: 11 EFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS--------------RSDPNFSIPQA 56

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
               G Y C          S+  T+ V
Sbjct: 57 NHSHSGDYHCTGNIGYTLYSSKPVTITV 84

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-07
 Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 20/88 (22%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
              +N   T  C+A G P P ++  K                          +      
Sbjct: 14 WTWPENSQQTPMCQAWGNPLPELKCLK-------------------DGTFPLPIGESVTV 54

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
               G Y C AR++ G   +R  T+ V
Sbjct: 55 TRDLEGTYLCRARSTQGEV-TREVTVNV 81

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 1e-07
 Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 8  PVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV 67
          P     K E    P ++WYKD +          +         L  + V     E+  G 
Sbjct: 22 PYMEFFKNENNELPKLQWYKDCK-----PLLLDNIHFSGVKDRLIVMNV----AEKHRGN 72

Query: 68 YWCLARNSVGTA-VSRNATLQVAVV 91
          Y C A  +           ++   +
Sbjct: 73 YTCHASYTYLGKQYPITRVIEFITL 97

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-07
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 7/82 (8%)

Query: 1  MVVAKNEPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVV 57
           +VA  +  T+ C+          T+  ++  E +        +      T +       
Sbjct: 12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD- 70

Query: 58 HGKKEQDGGVYWCLARNSVGTA 79
             +E     + CLA   + + 
Sbjct: 71 ---REDGHRNFSCLAVLDLMSR 89

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-07
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 5  KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
           +    +    +G P+P ++W+ +G ++  SK       V   T     L++ +     +
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM-N 73

Query: 65 GGVYWCLARNSVGTAVSRNATLQV 88
           G Y  +A+N  G    +  +   
Sbjct: 74 NGDYTLIAKNEYGKD-EKQISAHF 96

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 3e-07
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 1   MVVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVETSKSDAKSQRV----ILPTGSLFF 53
             V     +T + +  G      P ++W+K   +  +SK     Q            LF 
Sbjct: 14  GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73

Query: 54  LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           L +   +     G Y C            N  L V
Sbjct: 74  LHITDAQPA-FTGGYRCEVSTKDKFD-CSNFNLTV 106

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (97), Expect = 8e-07
 Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 7/88 (7%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + +       L     G P+PT  W         +       +                 
Sbjct: 12 IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSS------TTSIFFPSA 65

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
          K  D G Y    +N +G        + V
Sbjct: 66 KRADSGNYKLKVKNELGED-EAIFEVIV 92

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-06
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 9  VTLNCKAEGKPEPTIEWYKDGELVETS--KSDAKSQRVILPTGSLFFLRVVHGKKEQDGG 66
            +     G P PT+ W  +G+ +  S        Q   +  G L F +  H     + G
Sbjct: 20 HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH----YNNG 75

Query: 67 VYWCLARNSVGTAVSRNATLQV 88
           Y  +A+N +GTA ++      
Sbjct: 76 NYTLIAKNPLGTA-NQTINGHF 96

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 2e-06
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 1   MVVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
           + + +   V   C      P  +  W  +             + V   TG+L+  +    
Sbjct: 14  VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADG--RRFVSQTTGNLYIAKT--- 68

Query: 60  KKEQDGGVYWCLARNSVGTA----VSRNATLQVAV 90
            +  D G Y C A + +        S+ + L +A 
Sbjct: 69  -EASDLGNYSCFATSHIDFITKSVFSKFSQLSLAA 102

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-06
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 3  VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE 62
          V+K   + L  +     +  ++W K+G         + S+ +    G+   L +      
Sbjct: 18 VSKGHKIRLTVEL-ADHDAEVKWLKNG----QEIQMSGSKYIFESIGAKRTLTISQCSLA 72

Query: 63 QDGGVYWCLARNSVGTA 79
           D   Y C+      + 
Sbjct: 73 -DDAAYQCVVGGEKCST 88

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-06
 Identities = 9/88 (10%), Positives = 22/88 (25%), Gaps = 15/88 (17%)

Query: 2  VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          V  + +P+ L C +        + + ++                            +   
Sbjct: 13 VFKEEDPIHLRCHSWKNTALHKVTYLQN--------------GKDRKYFHHNSDFHIPKA 58

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +D G Y+C          S    + +
Sbjct: 59 TLKDSGSYFCRGLVGSKNVSSETVNITI 86

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 7e-06
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 19/97 (19%)

Query: 2   VVAKNEPVTLNCKAEG---KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVH 58
                + +TL C+ EG   + + T+   +  + ++   +  +   V            V 
Sbjct: 15  WQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTT---------TVL 65

Query: 59  GKKEQDGGVYWCLARNSVGTA-------VSRNATLQV 88
            +++  G  + C     +           S    LQ 
Sbjct: 66  VRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQT 102

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 9e-06
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 15/88 (17%)

Query: 2  VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          VV + +P+ L C          + +YKDG          ++ +      ++         
Sbjct: 11 VVMEGQPLFLRCHGWRNWDVYKVIYYKDG----------EALKYWYENHNISITNATV-- 58

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQV 88
            +D G Y+C  +       S    + V
Sbjct: 59 --EDSGTYYCTGKVWQLDYESEPLNITV 84

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 9e-06
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELV------ETSKSDAKSQRVILPTGSLFFL 54
           + V +NE + L C   G   P +EW              +  +   + RV   +  + F 
Sbjct: 11  VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFS 70

Query: 55  RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
            V      +D G Y C+     G       ++ + V+
Sbjct: 71  SV----TRKDNGEYTCMVSEEGGQNYG-EVSIHLTVL 102

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 9e-06
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 11/97 (11%)

Query: 1   MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKS------DAKSQRVILPTGSLFFL 54
           + + +N PV L+C   G   P +EW  D                +   RV      +   
Sbjct: 14  VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGI--- 70

Query: 55  RVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
                   +D G Y C+     G +      +++ V+
Sbjct: 71  -TFKSVTREDTGTYTCMVSEEGGNSYG-EVKVKLIVL 105

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-05
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 1   MVVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVETSKSDAKSQR----VILPTGSLFF 53
             V   E +T   K + +    +PTI+W+K   +   SK+    Q             F 
Sbjct: 10  GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 69

Query: 54  LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQV 88
           ++++  K     G Y C          S +  L+V
Sbjct: 70  MQIIKAKDN-FAGNYRCEVTYKDKFD-SCSFDLEV 102

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 3e-05
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 8/89 (8%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V   + V L C+ EG+      W         +   +     +  T       + +  
Sbjct: 12 ASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLT-------LANVT 64

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVA 89
           + +     C A N VG A   +  + V+
Sbjct: 65 SDLNRKNVTCWAENDVGRA-EVSVQVNVS 92

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 5e-05
 Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 14/91 (15%)

Query: 1  MVVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHG 59
          +     + VTL C      +  T+ W           +           G    LR V  
Sbjct: 16 LTSLPGDSVTLTCPGVEPEDNATVHWVLR------KPAAGSHPSRWAGMGRRLLLRSV-- 67

Query: 60 KKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
           +  D G Y C               L V V
Sbjct: 68 -QLHDSGNYSCYRAGRPA----GTVHLLVDV 93

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 1e-04
 Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 9/90 (10%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
            V + + VTL C +          +    L  T +        IL    +         
Sbjct: 13 TTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPI--------- 63

Query: 61 KEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
          K +D G Y C   N V    S +  L +  
Sbjct: 64 KREDAGEYQCEISNPVSVRRSNSIKLDIIF 93

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 13/87 (14%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK--------SDAKSQRVILPTGSLF 52
          +       VT +  +   P   + W K  + V   +        S      +   +GSL 
Sbjct: 5  IYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT 63

Query: 53 FLRVVHGKKEQDGGVYWCLARNSVGTA 79
             +       D   Y   + N   T 
Sbjct: 64 IYNL----TSSDEDEYEMESPNITDTM 86

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 12/97 (12%)

Query: 1  MVVAKNEPVTLNCK--AEGKPEPTIEWYKDGELVETSKSDAKSQ-----RVILPTGSLFF 53
          +  A    + LN            + W +   LV   K   K         IL  G L  
Sbjct: 5  VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 64

Query: 54 LRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAV 90
            +       D G Y     ++ GT +  N  L + +
Sbjct: 65 KNL----TRDDSGTYNVTVYSTNGTRIL-NKALDLRI 96

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 2e-04
 Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 18/112 (16%)

Query: 2   VVAKNEPVTLNCKAEGKPEPT--------------IEWYKDGELVETSKSDAKSQRVILP 47
                +   L C+       T              +  Y++G+  +  ++     R  L 
Sbjct: 13  RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 72

Query: 48  TGSLFFLRV---VHGKKEQDGGVYWCLARNSVGTAVSRNATLQVAVVIFFIS 96
             S+   +V   +   +  D G Y C  R+           L+V    ++I+
Sbjct: 73  KESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFYWIN 123

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.8 bits (81), Expect = 2e-04
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 3   VAKNEPVTLNCKAEGKP-EPTIEWYKDG-ELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
             +  P  L+C       +P I W K        +      +R+        +  +V  +
Sbjct: 14  PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKE 73

Query: 61  KEQDGGVYWCLARNSVGTAVSRNATLQVAVV 91
              D   Y C A+N+           ++  V
Sbjct: 74  DVSDIYKYVCTAKNAAVDEEVVLVEYEIKGV 104

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 5e-04
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 10/69 (14%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          V+   E ++L C +   P       K+GEL        +           F L  V    
Sbjct: 15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPA-------NFSLGPV---D 64

Query: 62 EQDGGVYWC 70
              G+Y C
Sbjct: 65 LNVSGIYRC 73

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (78), Expect = 5e-04
 Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 4/87 (4%)

Query: 3  VAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
          ++  E     C+      +  I W+       +      S        S   +       
Sbjct: 12 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA---N 68

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
            D G+Y C+     GT       +++
Sbjct: 69 IDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 6e-04
 Identities = 16/87 (18%), Positives = 22/87 (25%), Gaps = 18/87 (20%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           V + + VTL C+    PE     +                       S      +    
Sbjct: 16 SVLEKDSVTLKCQGAYSPEDNSTQW---------------FHNESLISSQASSYFIDAAT 60

Query: 62 EQDGGVYWCLARNSVGTAVSRNATLQV 88
            D G Y C    S     S    L+V
Sbjct: 61 VNDSGEYRCQTNLSTL---SDPVQLEV 84

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 7e-04
 Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 7/79 (8%)

Query: 1  MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGK 60
          + V   E      +   +P+   +W          +    S    +       + ++H  
Sbjct: 11 VEVFVGETAHFEIEL-SEPDVHGQWKLK------GQPLTASPDCEIIEDGKKHILILHNC 63

Query: 61 KEQDGGVYWCLARNSVGTA 79
          +    G     A N+   A
Sbjct: 64 QLGMTGEVSFQAANAKSAA 82

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 9e-04
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 6  NEPVTLNCKAEG--KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ 63
           +   LNC   G    +  ++  K+GE +E  +    S          F+L         
Sbjct: 19 GKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS----KDWSFYLLYYTEFTPT 74

Query: 64 DGGVYWC 70
          +   Y C
Sbjct: 75 EKDEYAC 81

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.002
 Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 6  NEPVTLNCKAEGK--PEPTIEWYKDGELVETSK-SDAKSQRVILPTGSLFFLRVVHGKKE 62
           +  TL C  +     + +++W  +   +  ++ S  + ++       +F    V   + 
Sbjct: 19 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEW 78

Query: 63 QDGGVYWC 70
          +    + C
Sbjct: 79 EQKDEFIC 86

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.002
 Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 11/74 (14%)

Query: 2  VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK 61
           V   E VT  C+ +      +   K+G      +   K Q         F L  V    
Sbjct: 14 EVISGEKVTFYCRLDTATSMFL-LLKEGRSSHVQRGYGKVQA-------EFPLGPV---T 62

Query: 62 EQDGGVYWCLARNS 75
              G Y C    +
Sbjct: 63 TAHRGTYRCFGSYN 76

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (74), Expect = 0.003
 Identities = 21/85 (24%), Positives = 27/85 (31%), Gaps = 24/85 (28%)

Query: 5  KNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD 64
           +  V L C      + TI+W KDG     S  +A      L            G   +D
Sbjct: 21 GDGSVLLTCGL---TDKTIKWLKDGS--IISPLNATKNTWNL------------GNNAKD 63

Query: 65 G-GVYWCLARNSVGTAVSRNATLQV 88
            G Y C        A   +  LQV
Sbjct: 64 PRGTYQC------QGAKETSNPLQV 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.7
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.69
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.68
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.67
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.67
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.67
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.65
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.65
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.64
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.62
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.61
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.61
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.59
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.59
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.58
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.57
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.57
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.56
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.56
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.55
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.55
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.54
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.54
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.54
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.54
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.53
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.53
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.52
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d2avga1	110	Cardiac myosin binding protein C, different domain	99.5
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.49
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.49
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.49
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.48
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.47
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.47
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.47
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.45
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.45
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.43
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.41
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.38
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.36
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.36
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.35
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.34
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.33
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.33
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.32
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.31
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.29
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.28
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.25
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.21
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.2
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.18
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.1
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.0
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.94
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.78
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.71
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.69
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.61
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.59
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.57
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.49
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.49
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.48
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.46
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.43
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.43
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.41
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.4
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.37
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.37
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.36
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.36
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.35
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.34
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.34
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.34
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.31
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.31
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.29
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.29
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.29
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.27
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.26
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.26
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.25
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.2
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.19
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.18
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.18
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.17
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.16
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.15
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.15
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.14
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.14
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.13
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.13
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.12
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.12
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.12
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.11
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.11
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.09
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.09
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.09
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.07
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.06
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.05
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.02
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.02
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.02
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.99
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.99
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.95
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.93
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.86
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.86
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.85
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.84
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.84
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.83
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.82
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.81
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.81
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.8
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.77
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.76
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.76
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.75
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.73
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.71
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.71
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.69
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.67
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.64
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.62
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.62
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.59
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.58
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.56
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.56
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.54
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.53
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.52
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.48
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.47
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.46
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.42
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.42
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.4
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.39
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.39
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.3
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.3
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.29
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.26
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.26
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.19
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.18
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.17
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.16
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.11
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.08
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.08
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.07
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.05
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.05
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.04
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.03
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.02
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.01
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.0
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.99
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.98
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.97
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.96
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.91
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.9
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.89
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.85
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.84
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.83
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.83
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.8
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.8
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.8
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.79
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.79
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.79
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.74
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.73
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.73
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.72
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.72
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.71
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.67
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.67
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.66
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.65
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.64
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.64
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.61
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.58
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.58
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.55
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.55
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.54
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.53
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.51
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.47
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.39
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.38
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.38
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.36
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.33
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.26
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.24
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.16
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.16
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.02
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.95
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	95.95
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.95
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	95.95
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	95.94
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	95.93
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	95.8
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	95.7
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	95.52
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.51
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	95.48
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	95.47
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	95.39
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	95.35
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	95.31
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	95.27
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	95.27
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	95.1
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	94.64
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	94.25
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	94.18
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	93.92
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	93.92
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	93.84
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	93.76
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	91.47
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	91.07
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	90.52
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	90.25
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	82.76

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.7e-16  Score=82.49  Aligned_cols=85  Identities=29%  Similarity=0.582  Sum_probs=64.4

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      +.+..|+.+.|.|.+.+.|.|.+.|+|++..+....    ................|..++..|.|.|.|.+.|..|...
T Consensus         6 ~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           6 LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLD----QLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSE----EEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             EEEcCCCeEEEEEEEEecCCceEEEEEeecccccce----eeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            357889999999999999999999999998876321    1122222333334456788899999999999999999765


Q ss_pred             eeeEEEEEE
Q psy8666          81 SRNATLQVA   89 (124)
Q Consensus        81 ~~~~~l~v~   89 (124)
                      +..+.|.|.
T Consensus        82 S~~~~l~V~   90 (91)
T d1rhfa1          82 SQPVWLTVE   90 (91)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence            667777764

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.9e-16  Score=83.98  Aligned_cols=85  Identities=20%  Similarity=0.200  Sum_probs=66.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|++..+...     ........... ....|..++..|.|.|.|.+.|..|.. +
T Consensus        11 ~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~-----~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~   83 (101)
T d2cqva1          11 KVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-----EHMKVENSENG-SKLTILAARQEHCGCYTLLVENKLGSR-Q   83 (101)
T ss_dssp             EEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS-----SSEEEEECSSE-EEEEETTCCTTTCEEEEEEEECSSCEE-E
T ss_pred             EEeCCCcEEEEEEEEecCCCEEEEEeCceeeccC-----CcEEEEEecce-eEEEEeeCCcccCEEEEEEEEECCCEE-E
Confidence            4678999999999999999999999999887542     22222223333 334568889999999999999999988 6


Q ss_pred             eeEEEEEEeeee
Q psy8666          82 RNATLQVAVVIF   93 (124)
Q Consensus        82 ~~~~l~v~~~~~   93 (124)
                      ..+.|.|...|.
T Consensus        84 ~~~~l~V~~~P~   95 (101)
T d2cqva1          84 AQVNLTVVDKPD   95 (101)
T ss_dssp             CCEEEEEECSCS
T ss_pred             EEEEEEEEecCC
Confidence            788899887664

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.69  E-value=8.2e-16  Score=82.80  Aligned_cols=82  Identities=29%  Similarity=0.417  Sum_probs=62.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|+|..+...     ................|.+++..|.|.|.|.+.|..|.. +
T Consensus        19 ~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~   92 (102)
T d1fhga_          19 EVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-----RHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA-T   92 (102)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEETTEECCCS-----SSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEecCCcEEEEEEEEeccCCeEEEEeeeccccce-----eeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEE-E
Confidence            4678999999999999999999999999987643     222222222222334568889999999999999999987 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus        93 ~~~~L~V~  100 (102)
T d1fhga_          93 CTAELLVE  100 (102)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            67777764

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.68  E-value=4.3e-16  Score=83.34  Aligned_cols=82  Identities=27%  Similarity=0.407  Sum_probs=62.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|++..+....    ........... ....|.++...|.|.|.|.+.|..|.. +
T Consensus        15 ~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~----~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~   88 (98)
T d1g1ca_          15 TVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD----RIYWYWPEDNV-CELVIRDVTGEDSASIMVKAINIAGET-S   88 (98)
T ss_dssp             EEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS----SEEEEEEETTE-EEEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeee----eeEEEeccceE-EEEEeccCccccCEEEEEEEEECCcEE-E
Confidence            46789999999999999999999999999876431    11222222222 234568889999999999999999988 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus        89 ~~~~L~V~   96 (98)
T d1g1ca_          89 SHAFLLVQ   96 (98)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            67777775

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=2.5e-16  Score=82.89  Aligned_cols=77  Identities=29%  Similarity=0.542  Sum_probs=60.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|+|..+...     ... ....+.+    .|..+...|.|.|.|.+.|..|.. .
T Consensus        12 ~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~-----~~~-~~~~~~L----~i~~v~~~D~G~Y~C~a~N~~G~~-~   80 (89)
T d1cs6a4          12 EADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ-----NRI-EVSGGEL----RFSKLVLEDSGMYQCVAENKHGTV-Y   80 (89)
T ss_dssp             EEETTCCEEEECEEEEESCCEEEEEETTEECCCC-----SSE-EEETTEE----EESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EECCCCcEEEEEEEEEEcCCEEEEEEeecccccc-----cee-eeeeeeE----EEEeecccCCEEEEEEEEeCCCEE-E
Confidence            4678999999999999999999999999987642     122 2233443    356679999999999999999987 4


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ....|.|.
T Consensus        81 ~~~~l~V~   88 (89)
T d1cs6a4          81 ASAELTVQ   88 (89)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56777764

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.6e-16  Score=84.50  Aligned_cols=81  Identities=32%  Similarity=0.616  Sum_probs=59.2

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      +..|+++.|.|.+.|.|.|.+.|+++|..+....... ....... ...+    .|..++.+|.|.|.|.+.|..|.. +
T Consensus        17 ~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~-~~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~G~~-~   90 (100)
T d1qz1a3          17 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD-EKHIFSDDSSEL----TIRNVDKNDEAEYVCIAENKAGEQ-D   90 (100)
T ss_dssp             TTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CC-SSEEECTTSCEE----EECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccc-eeEEeecCceEE----EeCCCCcccCEEEEEEEEECCCEE-E
Confidence            3569999999999999999999999999876432111 1112222 2223    456779999999999999999987 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus        91 ~~~~l~V~   98 (100)
T d1qz1a3          91 ASIHLKVF   98 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56777764

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.67  E-value=1.8e-16  Score=83.50  Aligned_cols=75  Identities=31%  Similarity=0.572  Sum_probs=58.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|++..+...      +... ....+    .|..++..|.|.|.|.+.|..|.. .
T Consensus        14 ~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~------~~~~-~~~~L----~i~~v~~~d~G~Y~C~a~N~~G~~-~   81 (89)
T d1biha4          14 VVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG------RATV-TDSGL----VIKGVKNGDKGYYGCRATNEHGDK-Y   81 (89)
T ss_dssp             EECTTSCEEEECEEEEESCCCCEEEETTEECCSS------SEEE-ETTEE----EESSCCSTTCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc------cEEE-eeeeE----EECCCChhhCEEEEEEEEECCCEE-E
Confidence            4678999999999999999999999999987532      2222 23333    456779999999999999999987 5


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        82 ~~~~l~V   88 (89)
T d1biha4          82 FETLVQV   88 (89)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5666665

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.65  E-value=8.2e-16  Score=82.09  Aligned_cols=83  Identities=18%  Similarity=0.258  Sum_probs=60.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+++.|.|.+.|.|.|.+.|+|+|..+.....   ... ............|..++..|.|.|.|.+.|..|...+
T Consensus        14 ~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~---~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          14 MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPE---DRI-TRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             EEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTT---SSE-ESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             EEecCCeEEEEEEEEEecCCEEEEEEeeeeccccce---eee-eeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            467899999999999999999999999998764211   111 1111111112346777999999999999999998756


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        90 ~s~~L~V   96 (97)
T d1biha3          90 HSLKLTV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6677766

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.65  E-value=8e-16  Score=82.12  Aligned_cols=83  Identities=23%  Similarity=0.329  Sum_probs=62.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|++..+....     .......+.. ....|..++..|.|.|.|.+.|..|.. +
T Consensus        12 ~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~-----~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~   84 (97)
T d1koaa1          12 EVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV-----KYMKRYNGND-YGLTINRVKGDDKGEYTVRAKNSYGTK-E   84 (97)
T ss_dssp             EEETTSCEEEEEEEECSSCCEEEEEETTEECCSBT-----TBBCCCSTTE-EEEEESCCCSGGGSCEEEEEEETTEEE-E
T ss_pred             EEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceee-----EEEEEecCCe-eEEEeCCCceecCEEEEEEEEECCCEE-E
Confidence            56789999999999999999999999999876431     1112222332 234567889999999999999999987 5


Q ss_pred             eeEEEEEEee
Q psy8666          82 RNATLQVAVV   91 (124)
Q Consensus        82 ~~~~l~v~~~   91 (124)
                      ..+.|.|...
T Consensus        85 ~~~~l~V~~~   94 (97)
T d1koaa1          85 EIVFLNVTRH   94 (97)
T ss_dssp             EEECCEEECS
T ss_pred             EEEEEEEeec
Confidence            5677776543

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.64  E-value=1.4e-15  Score=81.15  Aligned_cols=81  Identities=27%  Similarity=0.489  Sum_probs=60.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|+|..+....... ..........+    .|..++..|.|.|.|.+.|..|.. +
T Consensus        16 ~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~-~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~G~~-~   89 (97)
T d3dara1          16 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSL----IMESVVPSDKGNYTCVVENEYGSI-N   89 (97)
T ss_dssp             EECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTT-CCEEEGGGTEE----EECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EECCCCcEEEEEEEeEECCCEEEEEECCEeccccCcee-eEEEcCCcEEE----EECCCCcccCEEEEEEEEECCCEE-E
Confidence            35789999999999999999999999999886432111 11122233333    356679999999999999999987 5


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5677665

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.62  E-value=1.5e-15  Score=80.40  Aligned_cols=80  Identities=18%  Similarity=0.203  Sum_probs=60.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|++++..+....     .......... ....|..++..|.|.|.|.+.|..|.. +
T Consensus        13 ~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~-----~~~~~~~~~~-~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~   85 (93)
T d1wiua_          13 KIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP-----ELLVDAKSST-TSIFFPSAKRADSGNYKLKVKNELGED-E   85 (93)
T ss_dssp             EECSSBCCEEEEEEECCSSCEEEEECSSSSCBCST-----TSEEEEETTE-EEEECTTBCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeee-----eeeecccccc-eeeccccccccccEEEEEEEEECCCEE-E
Confidence            56789999999999999999999999998765431     1111222222 223567889999999999999999987 5


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        86 ~~~~l~V   92 (93)
T d1wiua_          86 AIFEVIV   92 (93)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5666665

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.5e-15  Score=77.73  Aligned_cols=72  Identities=31%  Similarity=0.529  Sum_probs=55.0

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+.+.|.|.+.|.|.| .+.|+|+|..+...           ....+.+..    ...+|.|.|.|.+.|..|...
T Consensus        12 ~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~-----------~~~~~~l~~----~~~~d~G~Y~C~A~N~~G~~~   76 (85)
T d1rhfa2          12 AVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-----------APSPSVLNV----TGVTQSTMFSCEAHNLKGLAS   76 (85)
T ss_dssp             EECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS-----------EESSEEEEE----CCCSSCEEEEEEEEETTEEEE
T ss_pred             EEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC-----------CCcceEEec----CCccccEEEEEEEEcCCCcEE
Confidence            46789999999999999988 89999999877632           112222222    267899999999999999765


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      +....|.|
T Consensus        77 S~~~~v~V   84 (85)
T d1rhfa2          77 SRTATVHL   84 (85)
T ss_dssp             CCCEEEEE
T ss_pred             EEEEEEEE
Confidence            66676665

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-14  Score=78.44  Aligned_cols=88  Identities=20%  Similarity=0.271  Sum_probs=62.3

Q ss_pred             EEecCCCEEEEEeeeccC-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKP-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+++.|.|.+.+.| .|.++|+|++..+....... ................|..++.+|.|.|.|.+.|..|...
T Consensus        14 ~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   92 (104)
T d2aw2a1          14 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDR-QTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIE   92 (104)
T ss_dssp             EEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSS-CEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEeCCCeEEEEEEEEeeCCCCEEEEEecCccccccccee-eeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEE
Confidence            467899999999999998 58999999876554321111 1112222333344455788899999999999999999765


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus        93 s~~~~l~V~e  102 (104)
T d2aw2a1          93 SHSTTLYVTD  102 (104)
T ss_dssp             CCCEEEEEEC
T ss_pred             EEEEEEEEEE
Confidence            6677777643

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.1e-15  Score=78.45  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=57.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|++++.....            ....+    .|..++..|.|.|.|.+.|..|.. .
T Consensus        10 ~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~------------~~~~l----~i~~v~~~DsG~Y~C~a~N~~g~~-~   72 (84)
T d2nxyb2          10 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------------GGKTL----SVSQLELQDSGTWTCTVLQNQKKV-E   72 (84)
T ss_dssp             CEETTCCEEEEEECCTTCCCEEEEECTTCCEEE------------ESSEE----EESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEECCCeEEEEEEeEcCCchheEEEeeccccee------------eeeee----eeeecccccccEEEEEEEeCCCEE-E
Confidence            367899999999999999999999998765432            12222    356779999999999999999887 5


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|...|
T Consensus        73 ~~~~v~V~~~~   83 (84)
T d2nxyb2          73 FKIDIVVLAFQ   83 (84)
T ss_dssp             EEEEECEECCC
T ss_pred             EEEEEEEEecC
Confidence            56777765543

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=2.1e-15  Score=79.55  Aligned_cols=75  Identities=25%  Similarity=0.373  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|++......        .....+.+    .|.+++..|.|.|.|.+.|..|.. +
T Consensus        16 ~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~--------~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~G~~-~   82 (91)
T d1cs6a3          16 YALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--------WLSSEPLL----HIQNVDFEDEGTYECEAENIKGRD-T   82 (91)
T ss_dssp             EEETTCCEEEECEEEEESCCEEEEEECCSCCSCC--------CSBSSSEE----EECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEecCCcEEEEEEEEEccCCEEEEEecccccceE--------eeeeeeEE----EeCCCCccCCEEEEEEEEECCCEE-E
Confidence            4678999999999999999999999976433211        01122333    356779999999999999999987 5


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1cs6a3          83 YQGRIIIH   90 (91)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56777664

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.58  E-value=1.5e-15  Score=80.16  Aligned_cols=80  Identities=25%  Similarity=0.471  Sum_probs=59.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+++.|.|.+.|.|.|.+.|+++|..+....     .......... ....|.+++..|.|.|.|.+.|..|.. +
T Consensus        10 ~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~-----~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~   82 (91)
T d1tnna_          10 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-----RHQVTTTKYK-STFEISSVQASDEGNYSVVVENSEGKQ-E   82 (91)
T ss_dssp             ECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSS-----SCEEEECSSE-EEEECSSCCSCCCEEEEEECBCSSCBC-C
T ss_pred             EEeCCCcEEEEEEEEEEeCCeEEEEEeeccccccc-----ceeeeeecce-eEEeecCCCHHHCEEEEEEEEECCCEE-E
Confidence            46789999999999999999999999998765321     1112222222 223567889999999999999999987 4


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ..+.|.|
T Consensus        83 ~~~~l~V   89 (91)
T d1tnna_          83 AEFTLTI   89 (91)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            5666655

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=9.2e-15  Score=77.77  Aligned_cols=82  Identities=21%  Similarity=0.336  Sum_probs=61.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.+ +.+.+.|++++..+....    ..........+    .|..++.+|.|.|.|.+.|..|...+
T Consensus        14 ~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~----~~~~~~~~~~L----~I~~v~~~d~G~Y~C~a~N~~g~~~S   84 (96)
T d1l6za2          14 TVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTE----RMTLSQNNSIL----RIDPIKREDAGEYQCEISNPVSVRRS   84 (96)
T ss_dssp             EECTTSCEEEEECCCC-SSCEEEEEETTEECCCCT----TEEEETTTTEE----EECSCCGGGCEEEEEEEESSSCCEEC
T ss_pred             EEeCCCeEEEEEccCC-CCCCEEEEEeeeeccccc----ceeccCCceEE----EEeccchhhceEEEEEEEeCCCCeEE
Confidence            4678999999999866 568899999998876421    12222233333    35667999999999999999988767


Q ss_pred             eeEEEEEEeee
Q psy8666          82 RNATLQVAVVI   92 (124)
Q Consensus        82 ~~~~l~v~~~~   92 (124)
                      ..+.|.|..+|
T Consensus        85 ~~~~L~V~~~P   95 (96)
T d1l6za2          85 NSIKLDIIFDP   95 (96)
T ss_dssp             CCCEEEECCSC
T ss_pred             EeEEEEEEcCC
Confidence            78888887765

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=8.1e-15  Score=77.42  Aligned_cols=79  Identities=25%  Similarity=0.387  Sum_probs=58.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|++..+....   .........+.+    .|.+++..|.|.|.|.+.|..+.. .
T Consensus        12 ~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~---~~~~~~~~~~~L----~I~~~~~~D~G~Y~C~a~n~~~~~-~   83 (92)
T d1epfa2          12 EFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK---DVRFIVLSNNYL----QIRGIKKTDEGTYRCEGRILARGE-I   83 (92)
T ss_dssp             ECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGC---CTTEEECTTSCE----EETTCCGGGCEEEEEEEEEGGGTE-E
T ss_pred             EEeCCCcEEEEEEEeecCCCeEEEEEcCccccccc---ceeeeeeeeeeE----EECCCCHHhCEEEEEEEEECcCCE-E
Confidence            45789999999999999999999999998876431   122333444444    356779999999999999976654 3


Q ss_pred             eeEEEEE
Q psy8666          82 RNATLQV   88 (124)
Q Consensus        82 ~~~~l~v   88 (124)
                      ....+.|
T Consensus        84 ~~~~i~V   90 (92)
T d1epfa2          84 NFKDIQV   90 (92)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            3444444

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.9e-15  Score=76.95  Aligned_cols=78  Identities=13%  Similarity=0.217  Sum_probs=57.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|++++......      .....  ... ....|..++.+|.|.|.|.+.|..|.. +
T Consensus        12 ~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~------~~~~~--~~~-~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~   81 (90)
T d1vcaa2          12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG------KVTNE--GTT-STLTMNPVSFGNEHSYLCTATCESRKL-E   81 (90)
T ss_dssp             EEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS------EEEEE--TTE-EEEEESSCCGGGCSEEEEEEEETTEEE-E
T ss_pred             EEECCCEEEEEEeccCCCCceEEEEecCccceee------eeeee--cCC-cEEEEecccccccceEEEEEEeCCCEE-E
Confidence            3568999999999999999999999987654321      11111  111 223567889999999999999999987 6


Q ss_pred             eeEEEEEE
Q psy8666          82 RNATLQVA   89 (124)
Q Consensus        82 ~~~~l~v~   89 (124)
                      ..+.|.|.
T Consensus        82 ~~~~v~V~   89 (90)
T d1vcaa2          82 KGIQVEIY   89 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            67777664

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=5.4e-14  Score=74.85  Aligned_cols=83  Identities=16%  Similarity=0.363  Sum_probs=56.4

Q ss_pred             EEecCCCEEEEEeeeccCC-CeEEEEe-CCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE-PTIEWYK-DGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~-p~v~w~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+..|+.+.|.|.+.+.|. |.+.|+| +|..+....    ................|..++..|.|.|.|.+.|..|..
T Consensus        11 ~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   86 (97)
T d1epfa1          11 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ----QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   86 (97)
T ss_dssp             EEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBS----SSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             EEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeecc----ccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcE
Confidence            4678999999999998874 7999998 455443221    111111111112234567889999999999999999876


Q ss_pred             eeeeEEEEE
Q psy8666          80 VSRNATLQV   88 (124)
Q Consensus        80 ~~~~~~l~v   88 (124)
                      .+..+.|.|
T Consensus        87 ~~~tv~l~V   95 (97)
T d1epfa1          87 SEATVNVKI   95 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            455666665

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2e-15  Score=78.43  Aligned_cols=69  Identities=29%  Similarity=0.439  Sum_probs=54.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcccee
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVS   81 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~   81 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|+|++..+...             ..+      ..++..|.|.|.|.+.|..|.. +
T Consensus        15 ~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-------------~~~------~~v~~~d~G~Y~C~A~N~~G~~-~   74 (84)
T d2oz4a3          15 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------GES------VTVTRDLEGTYLCRARSTQGEV-T   74 (84)
T ss_dssp             EEETTCEECCCCCCEEESCCEEEEEETTTEECCT-------------TSC------EECCGGGCEEEEEEEEETTEEE-E
T ss_pred             EEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-------------eee------eccccCCCCEEEEEEEcCCCEE-E
Confidence            5678999999999999999999999998765421             111      1237899999999999999987 5


Q ss_pred             eeEEEEEEe
Q psy8666          82 RNATLQVAV   90 (124)
Q Consensus        82 ~~~~l~v~~   90 (124)
                      ..+.|.|..
T Consensus        75 ~~~~l~V~~   83 (84)
T d2oz4a3          75 REVTVNVLS   83 (84)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            677777754

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.7e-14  Score=75.93  Aligned_cols=86  Identities=14%  Similarity=0.260  Sum_probs=61.0

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      +....+.|.+.|.|.|.+.|+|+|..+..... ..................|..++..|.|.|.|.+.|..|.. +..+.
T Consensus        16 ~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~   93 (103)
T d1wwbx_          16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKY-ICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQIS   93 (103)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEEECCCSS-EEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEE
T ss_pred             ceeEEEEEEEEEeCCCEEEEEECCEEeeeeee-eeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEE-EEEEE
Confidence            44566889999999999999999998864311 00111111222233445667889999999999999999998 67888


Q ss_pred             EEEEeeee
Q psy8666          86 LQVAVVIF   93 (124)
Q Consensus        86 l~v~~~~~   93 (124)
                      |.|...|.
T Consensus        94 v~V~~~P~  101 (103)
T d1wwbx_          94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEEEeCCC
Confidence            87776654

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.2e-14  Score=76.26  Aligned_cols=75  Identities=27%  Similarity=0.375  Sum_probs=56.7

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+. +.|.|.+.|+|++..+...      . .....+.+    .|.+++..|.|.|.|.+.|..|.. 
T Consensus        13 ~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~------~-~~~~~~~L----~i~~v~~~d~G~Y~C~a~N~~G~~-   80 (89)
T d1gl4b_          13 SVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS------R-AMDFNGIL----TIRNVQPSDAGTYVCTGSNMFAMD-   80 (89)
T ss_dssp             EECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT------T-EEEETTEE----EECSCCGGGCEEEEEEEECSSCEE-
T ss_pred             EEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc------c-cEeeceEE----EEecCCcccCEEEEEEEEECCCEE-
Confidence            467899999999986 6788999999988765421      1 12233443    356779999999999999999987 


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      +..+.|.|
T Consensus        81 ~~~~~l~V   88 (89)
T d1gl4b_          81 QGTATLHV   88 (89)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            55666665

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.8e-14  Score=75.76  Aligned_cols=81  Identities=20%  Similarity=0.272  Sum_probs=58.0

Q ss_pred             EEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEEEE
Q psy8666           9 VTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNATLQ   87 (124)
Q Consensus         9 ~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~   87 (124)
                      ..+.|.+.|.|.|.+.|+|+|..+....   ....... ..........|..++..|.|.|.|.+.|..|.. +..+.|.
T Consensus        20 ~~i~~~v~G~P~P~v~W~~n~~~i~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~   95 (105)
T d1wwca_          20 HCIEFVVRGNPPPTLHWLHNGQPLRESK---IIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGH   95 (105)
T ss_dssp             EEEEEEEECSSCCEEEEEETTEECCCSS---SEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEEC
T ss_pred             EEEEEEEEEeCCCeEEEEeCccccCCCc---ceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEE-EEEEEEE
Confidence            4467788999999999999999876431   1111112 222333445567789999999999999999988 6677887


Q ss_pred             EEeeee
Q psy8666          88 VAVVIF   93 (124)
Q Consensus        88 v~~~~~   93 (124)
                      |..+|.
T Consensus        96 V~~~P~  101 (105)
T d1wwca_          96 FLKEPF  101 (105)
T ss_dssp             CSCCCC
T ss_pred             EEeCCC
Confidence            766654

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.54  E-value=9.7e-14  Score=75.18  Aligned_cols=86  Identities=24%  Similarity=0.315  Sum_probs=56.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCC-C------ceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDA-K------SQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~-~------~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|+|++.......... .      ................|.++...|.|.|.|.+.|
T Consensus        16 tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   95 (109)
T d2fdbp2          16 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGN   95 (109)
T ss_dssp             EECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEE
Confidence            56789999999999999999999998764322110000 0      0001111222234456788899999999999999


Q ss_pred             CCccceeeeEEEEE
Q psy8666          75 SVGTAVSRNATLQV   88 (124)
Q Consensus        75 ~~~~~~~~~~~l~v   88 (124)
                      ..|.. ...+.|.|
T Consensus        96 ~~G~~-~~~~~L~V  108 (109)
T d2fdbp2          96 SIGIS-FHSAWLTV  108 (109)
T ss_dssp             SSCEE-EEEEEEEE
T ss_pred             CCCEE-EEEEEEEE
Confidence            99988 45666665

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-13  Score=75.47  Aligned_cols=92  Identities=21%  Similarity=0.197  Sum_probs=63.1

Q ss_pred             CEEecCCCEEEEEeeeccC---CCeEEEEeCCEEeeccCCCCC--ceEE-EccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           1 MVVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVETSKSDAK--SQRV-ILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p---~p~v~w~k~g~~~~~~~~~~~--~~~~-~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      +.+..|+++.|.|.+.|.|   .|.+.|+|++...........  .... ............|.+++..|.|.|.|.+.|
T Consensus        10 ~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   89 (113)
T d2dava1          10 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTY   89 (113)
T ss_dssp             CEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEEC
T ss_pred             EEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEe
Confidence            4678899999999999988   579999998643221100000  1111 112222333456788899999999999999


Q ss_pred             CCccceeeeEEEEEEeeee
Q psy8666          75 SVGTAVSRNATLQVAVVIF   93 (124)
Q Consensus        75 ~~~~~~~~~~~l~v~~~~~   93 (124)
                      ..|.. +..+.|.|..++.
T Consensus        90 ~~G~~-~~~~~L~V~~~~~  107 (113)
T d2dava1          90 KDKFD-SCSFDLEVHESTG  107 (113)
T ss_dssp             SSCEE-EECCEEEEECCCC
T ss_pred             CCCEE-EEEEEEEEEcCCC
Confidence            99987 6688888876543

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.53  E-value=3.1e-14  Score=74.53  Aligned_cols=76  Identities=16%  Similarity=0.298  Sum_probs=57.7

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+++.|.|.+.+. |.+.+.|||+|..+...          .....+    .|..++.+|.|.|.|.+.|..+...
T Consensus        11 ~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~----------~~~~~l----~i~~v~~~dsG~Y~C~a~n~~g~~~   76 (88)
T d2fcba2          11 EFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS----------RSDPNF----SIPQANHSHSGDYHCTGNIGYTLYS   76 (88)
T ss_dssp             EECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE----------SSCCEE----EETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEecCCeEEEEEEecCCCCCcEEEEEeeccccccc----------cccccc----ccCccCHHHCCeEEEEEEeCCCCEE
Confidence            46789999999998654 56689999999876531          112222    3567799999999999999988765


Q ss_pred             eeeEEEEEEee
Q psy8666          81 SRNATLQVAVV   91 (124)
Q Consensus        81 ~~~~~l~v~~~   91 (124)
                      +..+.|.|..|
T Consensus        77 S~~v~l~V~~P   87 (88)
T d2fcba2          77 SKPVTITVQAP   87 (88)
T ss_dssp             CCCEEEEECCC
T ss_pred             eeeEEEEEeCC
Confidence            67778887654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.53  E-value=1.8e-14  Score=76.30  Aligned_cols=79  Identities=29%  Similarity=0.512  Sum_probs=57.5

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.| .+.|+++|..+....   .........+.+    .|..++.+|.|.|.|.+.|..|...
T Consensus        13 ~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~---~~~~~~~~~~~L----~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          13 LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE---HNAALRKDEGSL----VFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             EEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTT---TTEEECTTSCCE----EESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeec---ceeeecccceEE----EEeccChhcCeEEEEEEEeCCCEEE
Confidence            56789999999999999876 699999998875321   112222233444    3567799999999999999999765


Q ss_pred             eeeEEEE
Q psy8666          81 SRNATLQ   87 (124)
Q Consensus        81 ~~~~~l~   87 (124)
                      +..+.|.
T Consensus        86 s~~v~l~   92 (94)
T d1biha1          86 SRVISFR   92 (94)
T ss_dssp             CCCEEEE
T ss_pred             EEEEEEE
Confidence            5554443

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.8e-14  Score=75.50  Aligned_cols=85  Identities=24%  Similarity=0.350  Sum_probs=56.3

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCC-CceEEEccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDA-KSQRVILPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~~   78 (124)
                      .+.+|+.+.|.|.+.+.|.| .+.|+|++.......... ............. ...|.++. ..|.|.|.|.+.|..|.
T Consensus        13 ~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~I~~v~~~~D~G~Y~C~A~N~~G~   91 (101)
T d3b5ha1          13 HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRS-ELHIENLNMEADPGQYRCNGTSSKGS   91 (101)
T ss_dssp             EECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEE-EEEECSCCTTTSSEEEEEEEEETTEE
T ss_pred             EECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEE-EEEEeccccccCCEEEEEEEEECCCE
Confidence            46789999999999999887 699999764332111111 1222222222222 33456666 57999999999999998


Q ss_pred             ceeeeEEEEE
Q psy8666          79 AVSRNATLQV   88 (124)
Q Consensus        79 ~~~~~~~l~v   88 (124)
                      . +..+.|.|
T Consensus        92 ~-~~~~~L~V  100 (101)
T d3b5ha1          92 D-QAIITLRV  100 (101)
T ss_dssp             E-EEEEEEEE
T ss_pred             E-EEEEEEEE
Confidence            8 55677765

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.52  E-value=8.7e-14  Score=72.93  Aligned_cols=74  Identities=14%  Similarity=0.314  Sum_probs=55.8

Q ss_pred             EEecCCCEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+++.|.|.+.+ .|.+.+.|||+|..+...          .....+    .|..++.+|.|.|.|.+.|..+...
T Consensus        13 ~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~----------~~~~~l----~I~~v~~~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2          13 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF----------HHNSDF----HIPKATLKDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             EEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE----------EECCCE----EESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEccCCeEEEEEEecCCCCCcEEEEEEccccccee----------cccccc----EECccceeccceEEEEEEeCCCCeE
Confidence            4679999999999864 456689999999876531          122333    3566799999999999999888765


Q ss_pred             eeeEEEEEE
Q psy8666          81 SRNATLQVA   89 (124)
Q Consensus        81 ~~~~~l~v~   89 (124)
                      +..+.|.|.
T Consensus        79 S~~v~itV~   87 (89)
T d1fnla2          79 SETVNITIT   87 (89)
T ss_dssp             CCCEEEEEE
T ss_pred             EeeEEEEEE
Confidence            667777664

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.2e-13  Score=73.35  Aligned_cols=88  Identities=18%  Similarity=0.234  Sum_probs=60.8

Q ss_pred             EEecCCCEEEEEeeeccC---CCeEEEEeCCEEeeccCCCCCce--E-EEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVETSKSDAKSQ--R-VILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p---~p~v~w~k~g~~~~~~~~~~~~~--~-~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+..|+++.|.|.+.|.|   .|.+.|+|++.............  . .............|.+++..|.|.|.|.+.|.
T Consensus        15 ~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   94 (110)
T d2avga1          15 EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTK   94 (110)
T ss_dssp             EEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEET
T ss_pred             EEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEEC
Confidence            567899999999999988   57899999875332211111111  1 11122223344567888999999999999999


Q ss_pred             CccceeeeEEEEEEe
Q psy8666          76 VGTAVSRNATLQVAV   90 (124)
Q Consensus        76 ~~~~~~~~~~l~v~~   90 (124)
                      .|.. ++.+.|.|..
T Consensus        95 ~G~~-~~~~~L~V~~  108 (110)
T d2avga1          95 DKFD-CSNFNLTVHE  108 (110)
T ss_dssp             TEEE-EEEEEEEEES
T ss_pred             CCeE-EEEEEEEEEe
Confidence            9998 6788888764

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7e-14  Score=73.29  Aligned_cols=77  Identities=21%  Similarity=0.330  Sum_probs=58.9

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+. |...+.|||+|..+....          ....+    .|..++.+|.|.|.|.+.|..+...
T Consensus        11 ~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~----------~~~~l----~i~~~~~~dsG~Y~C~a~n~~~~~~   76 (89)
T d1f2qa2          11 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----------ENHNI----SITNATVEDSGTYYCTGKVWQLDYE   76 (89)
T ss_dssp             EEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----------CSSEE----EESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc----------ccceE----EEeeeeeecCcEEEEEEEeCCCCeE
Confidence            46789999999998765 445789999998775320          11222    3566799999999999999888766


Q ss_pred             eeeEEEEEEeee
Q psy8666          81 SRNATLQVAVVI   92 (124)
Q Consensus        81 ~~~~~l~v~~~~   92 (124)
                      +..+.|.|..+|
T Consensus        77 S~~v~i~V~~~P   88 (89)
T d1f2qa2          77 SEPLNITVIKAP   88 (89)
T ss_dssp             CCCEEEEEECSC
T ss_pred             eeeEEEEEEeCC
Confidence            788888888765

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.49  E-value=2.7e-14  Score=76.04  Aligned_cols=75  Identities=37%  Similarity=0.630  Sum_probs=54.7

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccceeeeEE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAVSRNAT   85 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~   85 (124)
                      ++.+.|.|.+.|.|.|.+.|+++|..+....   .... ....+.+   .++..++.+|.|.|.|.+.|..|...+..+.
T Consensus        22 ~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~---~~~~-~~~~~~~---l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~   94 (97)
T d1cs6a1          22 EEKVTLTCRARANPPATYRWKMNGTELKMGP---DSRY-RLVAGDL---VISNPVKAKDAGSYQCVATNARGTVVSREAS   94 (97)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEECCCST---TSSE-EEETTEE---EEESCCHHHHCEEEEEEEEETTEEEECCCEE
T ss_pred             CCeEEEEEEEEEeCCCEEEEEEeeeeccCCC---CceE-EeeeeeE---EEEecccccCCEEEEEEEEECCCEEEEEEEE
Confidence            3679999999999999999999999876431   1122 2223322   2455668899999999999999987565665


Q ss_pred             EE
Q psy8666          86 LQ   87 (124)
Q Consensus        86 l~   87 (124)
                      |.
T Consensus        95 L~   96 (97)
T d1cs6a1          95 LR   96 (97)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.8e-14  Score=76.37  Aligned_cols=84  Identities=17%  Similarity=0.215  Sum_probs=58.7

Q ss_pred             cCCCEEE---EEeeeccCCCeEEEEeCCEEeeccCCCCCceEEE-cc---CCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           5 KNEPVTL---NCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVI-LP---TGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         5 ~G~~~~l---~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~-~~---~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .|....+   .|.+.|.|.|.+.|+++|+.+.....   ..... ..   .........|..+...|.|.|.|.+.|..|
T Consensus        11 ~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G   87 (107)
T d1he7a_          11 TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF---IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (107)
T ss_dssp             CCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSS---EEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccc---eeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence            4455554   45889999999999999998764311   11111 11   122334456677899999999999999999


Q ss_pred             cceeeeEEEEEEeee
Q psy8666          78 TAVSRNATLQVAVVI   92 (124)
Q Consensus        78 ~~~~~~~~l~v~~~~   92 (124)
                      .. ...+.|.|..+|
T Consensus        88 ~~-~~~i~v~v~~~P  101 (107)
T d1he7a_          88 QA-SASIMAAFMDNP  101 (107)
T ss_dssp             EE-EEEEEECCCSCT
T ss_pred             EE-EEEEEEEEEcCC
Confidence            88 667888877766

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.3e-13  Score=72.20  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=55.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe--C-CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK--D-GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+..|+++.|.|.+.|.|.|.+.|++  + +.....      ................|.+++.+|.|.|.|.+.|..|.
T Consensus        12 ~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   85 (96)
T d2c9aa1          12 EVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL------KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV   85 (96)
T ss_dssp             EECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCE------EEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEE
T ss_pred             EEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecC------CceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCe
Confidence            57789999999999999988766543  2 222211      11112222222333456788999999999999999998


Q ss_pred             ceeeeEEEEE
Q psy8666          79 AVSRNATLQV   88 (124)
Q Consensus        79 ~~~~~~~l~v   88 (124)
                      ..+....|.|
T Consensus        86 ~~s~~a~L~V   95 (96)
T d2c9aa1          86 GISNYAELVV   95 (96)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            7666667766

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.6e-14  Score=73.10  Aligned_cols=75  Identities=15%  Similarity=0.198  Sum_probs=54.6

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+..|+++.|.|.+. +.|.|.+.|++.+..+..       .......+    ...|.+++.+|.|.|.|.+.|..+.. 
T Consensus        14 ~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-------~~~~~~~~----~L~i~~v~~~D~G~Y~C~Asn~~g~~-   81 (90)
T d1gsma1          14 AVALGASRQLTCRLACADRGASVQWRGLDTSLGA-------VQSDTGRS----VLTVRNASLSAAGTRVCVGSCGGRTF-   81 (90)
T ss_dssp             EEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-------EEEESSEE----EEEECSCCGGGCEEEEEEEEETTEEE-
T ss_pred             EEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-------eeccCcee----eEEcCccChhhCCcEEEEEEeCCCcE-
Confidence            467899999999875 788999999987654321       11111111    23567789999999999999998876 


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      ...+.|.|
T Consensus        82 ~~s~~l~V   89 (90)
T d1gsma1          82 QHTVQLLV   89 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            56777765

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-14  Score=75.63  Aligned_cols=78  Identities=18%  Similarity=0.179  Sum_probs=54.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCe-EEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGG-VYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g-~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.|.|.|.+.|++++..+....       ........ ....|..+..+|.| .|.|.+.|..|.. 
T Consensus        13 ~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~-------~~~~~~~~-~~L~i~~~~~~d~G~~Y~C~a~N~~G~~-   83 (92)
T d2ifga1          13 SVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV-------MKSGGLPS-LGLTLANVTSDLNRKNVTCWAENDVGRA-   83 (92)
T ss_dssp             CCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE-------CCCCCSSE-EEEEEESCCSTTTTCCEEECCEETTEEC-
T ss_pred             EEeCCCEEEEeeeccCCCCcEEEEEECCceeeeee-------eeeeeccc-eeEEEccccccccceEEEEEEEcCCCEE-
Confidence            45789999999999999999999999986654210       01111111 12345666889998 6999999999987 


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      ...+.|.|
T Consensus        84 ~~s~~l~V   91 (92)
T d2ifga1          84 EVSVQVNV   91 (92)
T ss_dssp             CEEECCCC
T ss_pred             EEEEEEEE
Confidence            44555443

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7e-14  Score=77.77  Aligned_cols=86  Identities=26%  Similarity=0.369  Sum_probs=59.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCC------------------------CceEEEccCCcEEEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDA------------------------KSQRVILPTGSLFFLRVV   57 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~i   57 (124)
                      .+..|+.+.|.|.+.|.|.|.+.|++++..+.......                        ..+....... ......|
T Consensus        20 ~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I   98 (130)
T d1gxea_          20 VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK-DRSIFTV   98 (130)
T ss_dssp             EESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET-TEEEEEC
T ss_pred             EEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC-CEEEEEE
Confidence            57789999999999999999999999765443211000                        0000011111 1234567


Q ss_pred             cCCCccCCeEEEEEeEeCCccceeeeEEEEEE
Q psy8666          58 HGKKEQDGGVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        58 ~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      .+++.+|.|.|.|.+.|..|.. +..+.|.|.
T Consensus        99 ~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  129 (130)
T d1gxea_          99 EGAEKEDEGVYTVTVKNPVGED-QVNLTVKVI  129 (130)
T ss_dssp             SCCCTTTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             CcCChhcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            8889999999999999999987 567777664

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.9e-13  Score=72.02  Aligned_cols=69  Identities=17%  Similarity=0.383  Sum_probs=52.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+.+|+++.|.|.+.+ |.|.+.|+++|..+....    ........+.+    .|.+++.+|.|.|.|.+.|..+..
T Consensus         8 ~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~----~~~~~~~~~~L----~I~~v~~~DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1           8 FFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAES----PKYGLMGRKNL----LIFNLSEGDSGVYQCLSEERVKNK   76 (92)
T ss_dssp             EEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCS----SSBCCTTTTCE----EECSCCGGGCEEEEEEEEEECSSS
T ss_pred             eEeCCCEEEEEEEeec-cCCceeeecCcccceeee----eeeecceeeEE----EECCCCHHHCcEEEEEEEEcCCCE
Confidence            4789999999999988 778999999998776421    22223445554    356679999999999999988765

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.1e-13  Score=71.31  Aligned_cols=84  Identities=14%  Similarity=0.245  Sum_probs=58.9

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceE-EEc-----cCCcEEEEEEEcCCCccCCe-EEEEEeEeC
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQR-VIL-----PTGSLFFLRVVHGKKEQDGG-VYWCLARNS   75 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~i~~~~~~d~g-~y~C~~~~~   75 (124)
                      +..|+.+.|.|.+.+.|.|.+.|+++|..+........... ...     ..........|..++.+|.| .|.|.|.|.
T Consensus        14 v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~   93 (107)
T d1iray3          14 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT   93 (107)
T ss_dssp             CCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECS
T ss_pred             EeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeC
Confidence            56799999999999999999999999987754321111111 111     11123445667888999999 599999999


Q ss_pred             CccceeeeEEEE
Q psy8666          76 VGTAVSRNATLQ   87 (124)
Q Consensus        76 ~~~~~~~~~~l~   87 (124)
                      .|.. +..+.|.
T Consensus        94 ~G~~-~~~i~L~  104 (107)
T d1iray3          94 HGID-AAYIQLI  104 (107)
T ss_dssp             SCEE-EEEEEEE
T ss_pred             CCeE-EEEEEEE
Confidence            9987 4455553

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.43  E-value=1.2e-13  Score=74.59  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             EEecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCCCceEE-EccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccc
Q psy8666           2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDAKSQRV-ILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~   79 (124)
                      .+.+|+.+.|.|.+ .+.|.|.+.|+|+|..+...   ...... ....+.+    .|..++.+|.|.|.|.+.|..|..
T Consensus        15 ~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~---~~~~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2          15 KITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIP---ADGRRFVSQTTGNL----YIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             EEETTSCEEECCCCCSEESCCEEEEEESSTTCBCC---CCSSEEECTTTCCE----EESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEeCCCeEEEEEEccCCCCCCEEEEEEeecccccc---ccceeeeecCCCEE----eecccccccCcEEEEEEEECCCCE
Confidence            57889999999997 68899999999998765432   112222 2334444    356779999999999999988776

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.6e-13  Score=73.80  Aligned_cols=83  Identities=20%  Similarity=0.388  Sum_probs=54.8

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCC------CceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDA------KSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      +.+.+|+++.|.|.+.+.|.|.+.|+|++..+.......      ...........    ..|.+++.+|.|.|.|.+.|
T Consensus        14 v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~I~~v~~~D~G~Y~C~a~n   89 (105)
T d1nbqa1          14 VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG----ITFKSVTREDTGTYTCMVSE   89 (105)
T ss_dssp             CCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTE----EECSCCCTTSCSEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCce----EEEecccccceeeEEEEEEE
Confidence            357789999999999999999999999764433211000      00000111122    34677799999999999999


Q ss_pred             CCccceeeeEEEEE
Q psy8666          75 SVGTAVSRNATLQV   88 (124)
Q Consensus        75 ~~~~~~~~~~~l~v   88 (124)
                      ..|... ..+.+.+
T Consensus        90 ~~G~~~-~~~~v~v  102 (105)
T d1nbqa1          90 EGGNSY-GEVKVKL  102 (105)
T ss_dssp             TTSSCE-ECCEEEC
T ss_pred             CCCCEE-EEEEEEE
Confidence            999873 3444443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=7.6e-13  Score=70.84  Aligned_cols=82  Identities=21%  Similarity=0.398  Sum_probs=53.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccC-CC----CC-ceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSK-SD----AK-SQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~-~~----~~-~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+.+|+++.|.|.+.+.|.|.+.|++++....... ..    .. ........+.    ..|.+++.+|.|.|.|.+.|.
T Consensus        12 ~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t----L~I~~v~~~D~G~Y~C~a~n~   87 (102)
T d1f97a1          12 QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSG----ITFSSVTRKDNGEYTCMVSEE   87 (102)
T ss_dssp             EEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTE----EEESCCCGGGCEEEEEEEEET
T ss_pred             EEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCE----EEEeECCccCCEEEEEEEEEC
Confidence            56789999999999999999999998543221100 00    00 0011112222    346777999999999999999


Q ss_pred             CccceeeeEEEEE
Q psy8666          76 VGTAVSRNATLQV   88 (124)
Q Consensus        76 ~~~~~~~~~~l~v   88 (124)
                      .|.. ...+.+.+
T Consensus        88 ~g~~-~~~~~v~v   99 (102)
T d1f97a1          88 GGQN-YGEVSIHL   99 (102)
T ss_dssp             TSSS-EEEEEEEE
T ss_pred             CCCE-EEEEEEEE
Confidence            9886 33444444

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.2e-13  Score=70.78  Aligned_cols=66  Identities=18%  Similarity=0.297  Sum_probs=48.4

Q ss_pred             EEecCCCEEEEEeeeccCC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+.+|+.+.|.|.+.+.|. +.++|+|++..+...     ..........+    .|.+++.+|.|.|.|.+.|..
T Consensus        17 ~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~-----~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          17 TSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH-----PSRWAGMGRRL----LLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             EECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC-----CEEEEEESSEE----EECSCCGGGCEEEEEESSSSC
T ss_pred             EEeCCCcEEEEEEeecCCCCceEEEEEccccccce-----eeEEecCCCEE----EECCCChhcCEEEEEEECCcc
Confidence            4678999999999988665 589999998776532     22223334433    456779999999999998754

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=4.5e-12  Score=68.61  Aligned_cols=85  Identities=29%  Similarity=0.520  Sum_probs=56.5

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCC-----CceEEEc-cCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDA-----KSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      .+..|+.+.|.|.+. +.|.+.+.|+|++..+.......     ....... ....+    .|..++..|.|.|.|.+.|
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~I~~v~~~D~G~Y~C~a~N   88 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDL----IFDPVTAFDSGEYYCQAQN   88 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCE----EESSCCGGGCEEEEEEEEC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccce----EECCCCccCCEEEEEEEEE
Confidence            367899999999975 78999999999998765321100     1111111 12222    3567799999999999999


Q ss_pred             CCccce-eeeEEEEEEe
Q psy8666          75 SVGTAV-SRNATLQVAV   90 (124)
Q Consensus        75 ~~~~~~-~~~~~l~v~~   90 (124)
                      ..|... +..+.|.|..
T Consensus        89 ~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          89 GYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SSSCCEECCCEEEEEES
T ss_pred             CCCcEEEEEEEEEEEEe
Confidence            998763 3355555543

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.4e-12  Score=68.42  Aligned_cols=67  Identities=24%  Similarity=0.334  Sum_probs=50.9

Q ss_pred             EecCCCEEEEE------eeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           3 VAKNEPVTLNC------KAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G~~~~l~C------~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +..|....|.|      ...+.|.|.+.|+|+|..+...     ........+.+    .|..+..+|.|.|.|.+.|..
T Consensus        11 ~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~-----~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~n~~   81 (103)
T d1iray2          11 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-----NIHFSGVKDRL----IVMNVAEKHRGNYTCHASYTY   81 (103)
T ss_dssp             EESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCC-----SSSEEEETTEE----EESSCCGGGCEEEEEEEEEEE
T ss_pred             EecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCC-----CcEEEecCCEE----EEcccccccCcEEEEEEEECc
Confidence            56799999999      4568899999999999988642     22223334443    457779999999999999977


Q ss_pred             cc
Q psy8666          77 GT   78 (124)
Q Consensus        77 ~~   78 (124)
                      +.
T Consensus        82 ~g   83 (103)
T d1iray2          82 LG   83 (103)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.7e-12  Score=68.55  Aligned_cols=68  Identities=18%  Similarity=0.356  Sum_probs=48.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+..|+.+.|.|.+. .|.|.+.|||+|..+....    ........+.. ....|.++...|.|.|.|.+.|.
T Consensus        17 ~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~----~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          17 QVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSG----SKYIFESIGAK-RTLTISQCSLADDAAYQCVVGGE   84 (94)
T ss_dssp             EEETTSCEEEEEECS-SSSSCCEEEESSSEECCCS----SSSEEEEETTE-EEEEECSCSSSSCEEEEEEETTE
T ss_pred             EECcCCeEEEEEEEC-CCCceEEEEEcCccceeee----eeEeeeccCCe-EEeecCCCCceecEEEEEEEeeE
Confidence            467899999999985 4889999999999886431    11112222222 23456888999999999998774

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-12  Score=69.73  Aligned_cols=82  Identities=26%  Similarity=0.365  Sum_probs=58.4

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+. +.|.+.+.|+|++..+..... . ........+.+    .|..++..|.|.|.|.+.|..|.. 
T Consensus        13 ~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~-~-~~~~~~~~~~L----~I~~v~~~D~G~Y~C~a~N~~g~~-   85 (101)
T d1iray1          13 VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-Q-ASRIHQHKEKL----WFVPAKVEDSGHYYCVVRNSSYCL-   85 (101)
T ss_dssp             EEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCC-T-TSSEEEETTEE----EETTCCGGGCEEEEEEEEETTEEE-
T ss_pred             EEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccc-c-ceEEeccCCEE----EeccceecCCEEEEEEEECCCCeE-
Confidence            466799999999885 678999999998865442211 1 11122334444    356779999999999999999887 


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      ...+.|.|..
T Consensus        86 ~~~~~L~V~~   95 (101)
T d1iray1          86 RIKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEe
Confidence            4577777754

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.1e-13  Score=72.61  Aligned_cols=74  Identities=30%  Similarity=0.538  Sum_probs=52.2

Q ss_pred             EEecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCCCC---Cce-E-EEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKSDA---KSQ-R-VILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~~~---~~~-~-~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+..|+.+.|.|.+ .+.|.|.+.|+|++..+.......   ... . .......+    .|..++..|.|.|.|.+.|.
T Consensus        13 ~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l----~I~~v~~~D~G~Y~C~a~N~   88 (104)
T d1nbqa2          13 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL----VFDPLSASDTGEYSCEARNG   88 (104)
T ss_dssp             EEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCE----EESSCCGGGCCCEEEEEECS
T ss_pred             EEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccce----EECCCCcccCcEEEEEEEEC
Confidence            36789999999997 578999999999998765432111   000 0 01112223    35677999999999999999


Q ss_pred             Cccc
Q psy8666          76 VGTA   79 (124)
Q Consensus        76 ~~~~   79 (124)
                      .|..
T Consensus        89 ~G~~   92 (104)
T d1nbqa2          89 YGTP   92 (104)
T ss_dssp             SSCC
T ss_pred             CCce
Confidence            9976

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.32  E-value=2.3e-12  Score=70.06  Aligned_cols=74  Identities=26%  Similarity=0.438  Sum_probs=53.2

Q ss_pred             EecCCCEEEEEee-eccCCCeEEEEeCCEEeeccCC--CCCceEEEccCCcEEEEEEEcCCCccCC---eEEEEEeEeCC
Q psy8666           3 VAKNEPVTLNCKA-EGKPEPTIEWYKDGELVETSKS--DAKSQRVILPTGSLFFLRVVHGKKEQDG---GVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G~~~~l~C~~-~~~p~p~v~w~k~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~d~---g~y~C~~~~~~   76 (124)
                      +.+|+.+.|.|.+ .|.|.|.+.|+|++..+.....  ...........+.+.+..+    +..|.   |.|.|.+.|..
T Consensus        14 ~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v----~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          14 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV----TKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             CBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEE----CGGGCCSSEEEEEEEECTT
T ss_pred             ccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeee----EeeccCCceEEEEEEEeCC
Confidence            4579999999986 8999999999998766543221  1122334556677776666    66655   47999999999


Q ss_pred             ccce
Q psy8666          77 GTAV   80 (124)
Q Consensus        77 ~~~~   80 (124)
                      |...
T Consensus        90 g~~~   93 (111)
T d1biha2          90 VDEE   93 (111)
T ss_dssp             CSSC
T ss_pred             CCce
Confidence            8773

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.3e-12  Score=65.29  Aligned_cols=69  Identities=22%  Similarity=0.448  Sum_probs=47.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+..|+.+.|.|.+. .|.|.+.|+|++..+....   .........+.... ..|.+++.+|.|.|.|.+.|.
T Consensus        11 ~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~---~~~~~~~~~~~~~~-L~I~~v~~~D~G~Y~C~a~n~   79 (90)
T d1x44a1          11 TAYCGERVELECEVS-EDDANVKWFKNGEEIIPGP---KSRYRIRVEGKKHI-LIIEGATKADAAEYSVMTTGG   79 (90)
T ss_dssp             EEETTEEEEEEEECS-SSSCCCEEEETTEECCCST---TCSEEEEEETTEEE-EEEEEECTTTCSEEEEEETTE
T ss_pred             EEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCC---CccEEEEEeCCccE-EEECccccccCEEEEEEEecc
Confidence            567899999999984 5888999999998876431   11222222222222 234555999999999998774

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.3e-13  Score=73.28  Aligned_cols=87  Identities=18%  Similarity=0.274  Sum_probs=59.2

Q ss_pred             EecCCCEEEEEeeecc-CCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC-CeEEEEEeEeCCccce
Q psy8666           3 VAKNEPVTLNCKAEGK-PEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD-GGVYWCLARNSVGTAV   80 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~-p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d-~g~y~C~~~~~~~~~~   80 (124)
                      +.+|+.+.|.|.+.+. |.+.+.|++++..+........................|.+++..| .|.|.|.+.|..|.. 
T Consensus        18 ~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~-   96 (115)
T d2crya1          18 ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD-   96 (115)
T ss_dssp             CCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEE-
T ss_pred             EecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeE-
Confidence            4579999999999886 4567899999887754311110111111222333445678888898 599999999999988 


Q ss_pred             eeeEEEEEEe
Q psy8666          81 SRNATLQVAV   90 (124)
Q Consensus        81 ~~~~~l~v~~   90 (124)
                      +..+.|.|..
T Consensus        97 ~~~~~L~V~~  106 (115)
T d2crya1          97 TEIIRLKEQG  106 (115)
T ss_dssp             EEEECCCCSC
T ss_pred             EEEEEEEEEC
Confidence            6677776654

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4e-11  Score=64.17  Aligned_cols=81  Identities=12%  Similarity=0.194  Sum_probs=55.5

Q ss_pred             EEecCCCEEEEEeeec-cCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEG-KPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+..|+.+.|.|.+.| .|.|  .+.|++++..+....         ...........+...+..|.|.|.|.|.|..|.
T Consensus        15 ~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~---------~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~   85 (103)
T d1iama1          15 WQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP---------AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRP   85 (103)
T ss_dssp             EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE---------CCTTTEEEEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred             eEeCCCEEEEEEEecCCCCCCceEEEEccccccccccc---------cccccceEEEEEeeehhHCCCEEEEEEEeCCCC
Confidence            3668999999999985 5666  478999998876421         111222223344555788899999999999987


Q ss_pred             ceeeeEEEEEEeee
Q psy8666          79 AVSRNATLQVAVVI   92 (124)
Q Consensus        79 ~~~~~~~l~v~~~~   92 (124)
                      . +....+.+..++
T Consensus        86 ~-~~~~~~~~s~p~   98 (103)
T d1iama1          86 Q-GLELFENTSAPY   98 (103)
T ss_dssp             G-TSCEEEEECCCE
T ss_pred             c-cCeEeeeEcCCC
Confidence            6 445566655443

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.25  E-value=2.5e-11  Score=62.75  Aligned_cols=69  Identities=29%  Similarity=0.589  Sum_probs=50.3

Q ss_pred             EEecCCCEEEEEeeeccCCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.+ .+.|+++|..+..            ....+.+..+    +.+|.|.|.|.+.|..+   
T Consensus        15 ~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~------------~~~~l~i~~v----~~~dsG~Y~C~a~ns~~---   75 (85)
T d2fcba1          15 NVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT------------HTQPSYRFKA----NNNDSGEYTCQTGQTSL---   75 (85)
T ss_dssp             EEETTCEEEEEEECSSCCCTTCCEEEETTEECTT------------CCSSEEEEEC----CGGGCEEEEEECTTSBC---
T ss_pred             EEcCCCeEEEEEEEeeccceeEEEeecccccccc------------cccceEEeec----cccCCcEEEEECCCCcc---
Confidence            46789999999999888876 4778999987652            1234444444    89999999999987643   


Q ss_pred             eeeEEEEEE
Q psy8666          81 SRNATLQVA   89 (124)
Q Consensus        81 ~~~~~l~v~   89 (124)
                      +..+.|.|.
T Consensus        76 S~~v~l~V~   84 (85)
T d2fcba1          76 SDPVHLTVL   84 (85)
T ss_dssp             CCCEEEEEE
T ss_pred             cccEEEEEE
Confidence            445666653

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.21  E-value=1.2e-12  Score=68.45  Aligned_cols=68  Identities=18%  Similarity=0.221  Sum_probs=50.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .+.+|+++.|.|.+ +.|.|.+.|+|+|..+...     ........+.. ....|.+++..|.|.|.|.+.|..
T Consensus        12 ~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~-----~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~c~a~n~~   79 (89)
T d1tiua_          12 EVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTAS-----PDCEIIEDGKK-HILILHNCQLGMTGEVSFQAANAK   79 (89)
T ss_dssp             EEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSS-----SSCEEEECSSC-EEEECCSCCSCCCSEECCBCSSCB
T ss_pred             EEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccc-----eeEEEEeecee-EEEEEcCCChhcCEEEEEEECceE
Confidence            57789999999997 5688999999999887643     22222333333 234568889999999999987743

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.1e-11  Score=64.46  Aligned_cols=82  Identities=15%  Similarity=0.175  Sum_probs=50.6

Q ss_pred             EEecCCCEEEEEeeec-cC--CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           2 VVAKNEPVTLNCKAEG-KP--EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~-~p--~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .+..|+.+.|.|.+.| .|  .+.+.|+|++..+.........    ...........+...+..|.|.|.|.|.|..+.
T Consensus        13 ~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~----~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~   88 (106)
T d1zxqa1          13 LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAA----PAPQEATATFNSTADREDGHRNFSCLAVLDLMS   88 (106)
T ss_dssp             EECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSST----TCTTCEEEEEEEECCGGGGGCEEEEEEEEECGG
T ss_pred             EEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEe----ecccceeEEEEEeeehhcCCcEEEEEEEecCCC
Confidence            3668999999999975 44  4578999999987643111000    111122222233344566778999999999876


Q ss_pred             ceeeeEEEEE
Q psy8666          79 AVSRNATLQV   88 (124)
Q Consensus        79 ~~~~~~~l~v   88 (124)
                      . ...+.+.+
T Consensus        89 ~-~~~~~~~~   97 (106)
T d1zxqa1          89 R-GGNIFHKH   97 (106)
T ss_dssp             G-TCCEEEEE
T ss_pred             C-CCeeEecc
Confidence            5 33444444

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.18  E-value=6.5e-11  Score=61.03  Aligned_cols=68  Identities=26%  Similarity=0.524  Sum_probs=49.2

Q ss_pred             EEecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.+. +.|++++..+...            ...+    .|..++.+|.|.|.|.+.+...   
T Consensus        16 ~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~------------~~~l----~i~~~~~~d~G~Y~C~a~~s~~---   76 (84)
T d1fnla1          16 SVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------------ASSY----FIDAATVNDSGEYRCQTNLSTL---   76 (84)
T ss_dssp             EEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS------------CSEE----EESSCCGGGCEEEEEECSSSCC---
T ss_pred             EEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec------------ceee----EecCCcccCCEEEEEEccCCCc---
Confidence            577899999999999988876 5567888766521            1222    3567799999999999887543   


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      +..+.|.|
T Consensus        77 S~~v~L~V   84 (84)
T d1fnla1          77 SDPVQLEV   84 (84)
T ss_dssp             CCCEEEEE
T ss_pred             cccEEEEC
Confidence            44555543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.1e-10  Score=59.93  Aligned_cols=69  Identities=30%  Similarity=0.476  Sum_probs=46.8

Q ss_pred             EEecCCCEEEEEeeeccCCCe-EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPT-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~-v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~   80 (124)
                      .+.+|+.+.|.|.+.+.|.+. +.|++++..+...            ...+    .|..++.+|.|.|.|.+.|...   
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~------------~~~l----~i~~v~~~d~G~Y~C~a~~s~~---   72 (82)
T d1f2qa1          12 RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------------NSSL----NIVNAKFEDSGEYKCQHQQVNE---   72 (82)
T ss_dssp             EEETTCCEEEECCTTCC----CCEEEETTEECSCC------------SSEE----EECSCCGGGCEEEEEECTTSSC---
T ss_pred             EEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc------------ccee----EECCCChhhCCcEEEEecCCCC---
Confidence            467899999999999888875 4567888765421            1222    3567799999999999887543   


Q ss_pred             eeeEEEEEE
Q psy8666          81 SRNATLQVA   89 (124)
Q Consensus        81 ~~~~~l~v~   89 (124)
                      +..+.|.|.
T Consensus        73 S~~v~l~V~   81 (82)
T d1f2qa1          73 SEPVYLEVF   81 (82)
T ss_dssp             CCCEEEEEE
T ss_pred             cccEEEEEE
Confidence            445666653

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=3.1e-09  Score=58.31  Aligned_cols=91  Identities=14%  Similarity=0.239  Sum_probs=54.5

Q ss_pred             EEecCCCEEEEEeeeccC---CCeEEEEeCCEEee----c-------cC-CCCCceEEEccC--CcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP---EPTIEWYKDGELVE----T-------SK-SDAKSQRVILPT--GSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p---~p~v~w~k~g~~~~----~-------~~-~~~~~~~~~~~~--~~~~~~~~i~~~~~~d   64 (124)
                      .+..|+++.|.|......   ...+.|++.+....    .       .. .....+......  ........|.+++..|
T Consensus        13 ~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   92 (126)
T d1pkoa_          13 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSD   92 (126)
T ss_dssp             EEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGG
T ss_pred             EEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhH
Confidence            567899999999875322   34589998643210    0       00 001111111111  1112345578889999


Q ss_pred             CeEEEEEeEeCCccceeeeEEEEEEeeee
Q psy8666          65 GGVYWCLARNSVGTAVSRNATLQVAVVIF   93 (124)
Q Consensus        65 ~g~y~C~~~~~~~~~~~~~~~l~v~~~~~   93 (124)
                      .|.|.|.+.+..+.. ...+.|.|..|..
T Consensus        93 ~G~Y~C~v~~~~~~~-~~~v~L~V~~P~~  120 (126)
T d1pkoa_          93 EGGYTCFFRDHSYQE-EAAVELKVEDPFY  120 (126)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEEEECTTT
T ss_pred             CeEEEEEEEECCCEE-EEEEEEEEeCCCE
Confidence            999999999987766 5677888876543

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.2e-09  Score=56.02  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=47.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCC-----C--CceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSD-----A--KSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLAR   73 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~-----~--~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~   73 (124)
                      ....|++++|.|... .|.+.+.|++++..+......     .  ...... ...+.+    .|.+++.+|.|.|.|.+.
T Consensus         6 ~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL----~I~~l~~~DsG~Y~c~~~   80 (93)
T d1ccza1           6 YGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL----TIYNLTSSDEDEYEMESP   80 (93)
T ss_dssp             EEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCE----EECSCCGGGCEEEEEECT
T ss_pred             EEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEE----EEEecChhhCEEEEEEEE
Confidence            456899999999864 588899999988765321100     0  001111 122334    467779999999999988


Q ss_pred             eCCccc
Q psy8666          74 NSVGTA   79 (124)
Q Consensus        74 ~~~~~~   79 (124)
                      |..+..
T Consensus        81 n~~~t~   86 (93)
T d1ccza1          81 NITDTM   86 (93)
T ss_dssp             TCCSCE
T ss_pred             CCCcEE
Confidence            865543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=2.2e-08  Score=52.71  Aligned_cols=84  Identities=20%  Similarity=0.245  Sum_probs=54.1

Q ss_pred             EEecCCCEEEEEeee-c-cCCCeEEEEeCCEEeeccCC-----CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAE-G-KPEPTIEWYKDGELVETSKS-----DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~-~p~p~v~w~k~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      ....|+++.|.|... . .....+.|++++..+.....     ..........++++.    |.+++.+|.|.|.|.+.+
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~----I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK----IKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEE----ESSCCGGGCEEEEEEEEE
T ss_pred             EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEE----EeCCCHHHCEEEEEEEEe
Confidence            345799999999632 2 23346999998876642110     011223344556554    566699999999999999


Q ss_pred             CCccc-eeeeEEEEEE
Q psy8666          75 SVGTA-VSRNATLQVA   89 (124)
Q Consensus        75 ~~~~~-~~~~~~l~v~   89 (124)
                      ..|.. ....+.|.|.
T Consensus        82 ~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          82 TNGTRILNKALDLRIL   97 (98)
T ss_dssp             TTCCEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEE
Confidence            88875 2445566653

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=2.3e-07  Score=46.71  Aligned_cols=86  Identities=17%  Similarity=0.278  Sum_probs=56.3

Q ss_pred             EEecCCCEEEEEeee-ccCCCeEEEEe-CCEEeeccCCCCCc--eEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           2 VVAKNEPVTLNCKAE-GKPEPTIEWYK-DGELVETSKSDAKS--QRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~-~~p~p~v~w~k-~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      .+..|+.+.+.|++. -...|.++|-| +|..-.......+.  ......+-+.+++.. ..+..+|.|.|+|.+.-..+
T Consensus        14 s~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF-~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          14 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHF-KPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEE-TTCCGGGCEEEEEEEEETTE
T ss_pred             eEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEe-eeeeecCCCceEEecCCChh
Confidence            367899999999975 55789999987 45432211111111  122233445555554 67789999999999988877


Q ss_pred             cceeeeEEEEE
Q psy8666          78 TAVSRNATLQV   88 (124)
Q Consensus        78 ~~~~~~~~l~v   88 (124)
                      ...+.++.+.|
T Consensus        93 vieSHSvti~V  103 (104)
T d1xaua_          93 VINSHSVTIHV  103 (104)
T ss_dssp             EEECCCEEEEE
T ss_pred             heecceEEEEe
Confidence            66666666554

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=3.8e-08  Score=52.61  Aligned_cols=82  Identities=20%  Similarity=0.229  Sum_probs=50.3

Q ss_pred             EecCCCEEEEEeeeccCCCeEEEEeCCEEeec-------cC-------CCCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           3 VAKNEPVTLNCKAEGKPEPTIEWYKDGELVET-------SK-------SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      +.+|+++.|.|.........+.|+|.......       ..       .....+.....++++.    |.+++.+|.|.|
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~----I~~v~~~D~G~Y   86 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL----FQMITMKDMGVY   86 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEE----ECSCCGGGCEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEE----EcCCCchhCEEE
Confidence            45899999999754444567899985431110       00       0011233445566654    566699999999


Q ss_pred             EEEeEeCCccceeeeEEEEE
Q psy8666          69 WCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l~v   88 (124)
                      .|.+.+..+......+.|.|
T Consensus        87 ~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          87 TLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEETTEEECCCCEEECC
T ss_pred             EEEEEECCCCEEEEEEEEEE
Confidence            99998876544344555543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=8.1e-07  Score=46.25  Aligned_cols=79  Identities=19%  Similarity=0.207  Sum_probs=49.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc-cce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG-TAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~-~~~   80 (124)
                      .+..|++++|.|... .+...+.|+|+|........       ............|..++..|.|.|.|...+... +..
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-------~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~   85 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-------KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEP   85 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-------SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCC
T ss_pred             cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-------ccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCC
Confidence            366899999999763 24556788999865432100       011122222334677799999999999877644 334


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      |..+.|.|
T Consensus        86 Sd~leL~V   93 (95)
T d1olla1          86 SNLLDLVV   93 (95)
T ss_dssp             CCCEEEEE
T ss_pred             CCCEEEEE
Confidence            66666665

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.4e-07  Score=49.65  Aligned_cols=81  Identities=16%  Similarity=0.063  Sum_probs=47.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc-cce
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG-TAV   80 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~-~~~   80 (124)
                      .+..|++++|.|... .+...+.|+|+|......     ................|..++..|.|.|.|...+... +..
T Consensus        17 ~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~-----~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~   90 (99)
T d1ucta1          17 VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYRE-----IGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRY   90 (99)
T ss_dssp             EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEE-----CSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCcee-----ccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCC
Confidence            367899999999764 345567888876432211     0000001111111123567799999999999888654 334


Q ss_pred             eeeEEEEE
Q psy8666          81 SRNATLQV   88 (124)
Q Consensus        81 ~~~~~l~v   88 (124)
                      |..+.|.|
T Consensus        91 Sdpl~L~V   98 (99)
T d1ucta1          91 SDTLELVV   98 (99)
T ss_dssp             CCCEEEEE
T ss_pred             CCCEEEEe
Confidence            66666655

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.57  E-value=2.1e-07  Score=49.28  Aligned_cols=74  Identities=19%  Similarity=0.397  Sum_probs=43.9

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--cc--C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--TS--K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~~--~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      +.+.+|++++|.|.........+.|||.  |..+.  ..  .   ...........+... ....|.+++.+|.+.|.|.
T Consensus         8 l~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           8 VSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTT-VTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTE-EEEEETTCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCc-cCceEcCcchhHCceEEee
Confidence            3578999999999876555567899973  32211  10  0   000111112222222 3345788899999999997


Q ss_pred             eEeC
Q psy8666          72 ARNS   75 (124)
Q Consensus        72 ~~~~   75 (124)
                      +...
T Consensus        87 ~~~~   90 (103)
T d8faba1          87 AWDN   90 (103)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            6543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.9e-06  Score=46.88  Aligned_cols=72  Identities=14%  Similarity=0.266  Sum_probs=43.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEe-------eccCCCC----------CceEEEc-cCCcEEEEEEEcCCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV-------ETSKSDA----------KSQRVIL-PTGSLFFLRVVHGKK   61 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~-------~~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~   61 (124)
                      .+.+|+++.|.|...+...+.+.|||.  |..+       .......          ....... ..+.. ....|.+++
T Consensus        12 ~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~L~I~~~~   90 (122)
T d1nezg_          12 DAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK-YVLTLNKFS   90 (122)
T ss_dssp             EECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE-EEEEESSCC
T ss_pred             EECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE-eEEEEcccc
Confidence            567899999999987777778999972  2211       0000000          0011111 12222 345568889


Q ss_pred             ccCCeEEEEEeEe
Q psy8666          62 EQDGGVYWCLARN   74 (124)
Q Consensus        62 ~~d~g~y~C~~~~   74 (124)
                      .+|.|.|.|.+..
T Consensus        91 ~~Dsg~YyCa~~~  103 (122)
T d1nezg_          91 KENEGYYFCSVIS  103 (122)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCCEEEEeeEeC
Confidence            9999999997664

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=5.1e-07  Score=48.04  Aligned_cols=86  Identities=20%  Similarity=0.314  Sum_probs=49.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEeec---c----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVET---S----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~~---~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|++++|.|.........+.||+.  +.....   .    ............... .....|.+++.+|.+.|.|.+
T Consensus        12 ~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~l~~~DSa~YyCa~   90 (107)
T d1kcvl1          12 GMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSAT-DFTLTISSVQADDDADYYCGQ   90 (107)
T ss_dssp             EEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEEEEEEE
T ss_pred             eECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCC-eeecEEHhheecCCceEEEEe
Confidence            577899999999987655667999973  221110   0    000111111111222 234567888999999999976


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      .............|.|
T Consensus        91 ~~~~~~~FG~GT~L~V  106 (107)
T d1kcvl1          91 SYSSPLTFGGGTKLEL  106 (107)
T ss_dssp             CSSSSCEECCCEEEEE
T ss_pred             cCCCceeECCCEEEEE
Confidence            5433333333444444

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=5.2e-07  Score=48.06  Aligned_cols=86  Identities=20%  Similarity=0.319  Sum_probs=48.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEeec--c-----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVET--S-----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|++++|.|.........+.|||.  |..+..  .     ......+........ .....|.+++.+|.+.|.|.+
T Consensus        12 tv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~-~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d1ospl1          12 SVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGK-DYTLSITSLQTEDVATYFCQQ   90 (107)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSS-SEEEEESSCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCC-eEEeEEcccccccCCcEEEee
Confidence            578899999999886655567999983  221110  0     000111222222222 234567888999999999976


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      .......+.....|.|
T Consensus        91 ~~~~~~~FG~GT~LtV  106 (107)
T d1ospl1          91 YWSPPPTFGGGTKLEI  106 (107)
T ss_dssp             CSSSSCEECCCEEEEE
T ss_pred             ccCCCCeECCCEEEEE
Confidence            5433332333344443

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.48  E-value=2.1e-06  Score=46.14  Aligned_cols=73  Identities=18%  Similarity=0.382  Sum_probs=41.9

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeC-----CEEee-----ccCC-------CCCceE-EEccCCcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKD-----GELVE-----TSKS-------DAKSQR-VILPTGSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~-----g~~~~-----~~~~-------~~~~~~-~~~~~~~~~~~~~i~~~~~   62 (124)
                      .+.+|+.+.|.|...+. ....+.||+.     ++.+.     ....       ...... .............|.+++.
T Consensus         9 ~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   88 (115)
T d2atpb1           9 LVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKP   88 (115)
T ss_dssp             EECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCG
T ss_pred             EEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccCC
Confidence            57899999999998653 4567899974     22110     0000       000111 1111222222345678899


Q ss_pred             cCCeEEEEEeEe
Q psy8666          63 QDGGVYWCLARN   74 (124)
Q Consensus        63 ~d~g~y~C~~~~   74 (124)
                      +|.|.|.|.+..
T Consensus        89 ~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          89 EDSDFYFCATVG  100 (115)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCCcEEEEeEcC
Confidence            999999997654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.6e-07  Score=50.08  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=26.0

Q ss_pred             EEcCCCccCCeEEEEEeEeCCccceeeeEEEEEE
Q psy8666          56 VVHGKKEQDGGVYWCLARNSVGTAVSRNATLQVA   89 (124)
Q Consensus        56 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~   89 (124)
                      .|.+++..|.|.|.|.+.+..+.. ...+.|.|.
T Consensus        91 ~I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~  123 (124)
T d1eaja_          91 NVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVVL  123 (124)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEcccEEccCEEEEEEEEECCCeE-EeEEEEEEE
Confidence            467779999999999999887655 556666664

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.43  E-value=6.6e-07  Score=47.56  Aligned_cols=72  Identities=26%  Similarity=0.470  Sum_probs=43.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEeec---c----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVET---S----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~~---~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.++|.|.........+.|||.  |.....   .    ......+........ .....|.+++.+|.|.|.|.+
T Consensus        12 sv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~-~~~L~I~~~~~~Dsa~YyCa~   90 (106)
T d1i8ka_          12 SVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGT-DFVFTIENTLSEDVGDYYCLQ   90 (106)
T ss_dssp             ECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT-EEEEEESSCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCC-eeeecccCCccccCEEEeEec
Confidence            467899999999876655667899973  322110   0    000111111111222 234567888999999999975


Q ss_pred             Ee
Q psy8666          73 RN   74 (124)
Q Consensus        73 ~~   74 (124)
                      ..
T Consensus        91 ~~   92 (106)
T d1i8ka_          91 SF   92 (106)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.43  E-value=2.5e-06  Score=45.28  Aligned_cols=86  Identities=16%  Similarity=0.319  Sum_probs=49.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEe---e-cc---CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV---E-TS---KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~---~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.++|.|.........+.|||.  |..+   . ..   ............... .....|.+++.+|.+.|.|..
T Consensus        12 ~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~l~~~DsA~YyCa~   90 (107)
T d1tjgl1          12 SASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGT-EFTLTISTLRPEDFATYYCQQ   90 (107)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT-EEEEEESSCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCC-EEEEEeccceeCcCceEEEEE
Confidence            577899999999987555678899973  2211   1 00   000111122222222 234556888999999999965


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      ...........+.|.|
T Consensus        91 ~~~~~~~FG~GT~LtV  106 (107)
T d1tjgl1          91 LHFYPHTFGGGTRVDV  106 (107)
T ss_dssp             CSBSSCEECCCEEEEE
T ss_pred             CcCCcCeECCCEEEEE
Confidence            5433333333444444

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.41  E-value=2.2e-06  Score=45.57  Aligned_cols=86  Identities=17%  Similarity=0.298  Sum_probs=49.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe--CCEEee---cc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK--DGELVE---TS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k--~g~~~~---~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|++++|.|.........+.|||  .|+.+.   .. .   .............. .....|.+++.+|.|.|.|.+
T Consensus        12 ~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~l~~~Dsa~YyCa~   90 (107)
T d1c5cl1          12 SASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGS-DYSLTISSLESEDFADYYCLQ   90 (107)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETT-EEEEEESSCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCC-EEEEEEhhhcccCCeEEEEec
Confidence            47789999999997765666789997  333211   00 0   00011111112222 234567888999999999976


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      .+...........|.|
T Consensus        91 ~~~~~~~FG~GT~LtV  106 (107)
T d1c5cl1          91 YASFPRTFGGGTKLEI  106 (107)
T ss_dssp             CSSSSCEECCCEEEEE
T ss_pred             CcCCcCeECCCEEEEE
Confidence            5543333333444444

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=2.9e-06  Score=45.06  Aligned_cols=86  Identities=22%  Similarity=0.369  Sum_probs=48.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--c--c---CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--T--S---KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~--~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|++++|.|.........+.|||.  |..+.  .  .   ......+......... ....|.+++.+|.|.|.|..
T Consensus        12 ~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~-~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d1j1pl_          12 SVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTD-FTLSINSVETEDFGMYFCQQ   90 (107)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCE-EEEEEcccCcCCCEEEEEEc
Confidence            578899999999876555667999973  22211  0  0   0001112222222222 34556888999999999976


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      .+.....+.....|.|
T Consensus        91 ~~~~~~~FG~GT~LtV  106 (107)
T d1j1pl_          91 ANSWPYTFGGGTKLEI  106 (107)
T ss_dssp             CSSSSCEECCCEEEEE
T ss_pred             CCCCccEECCCeEEEE
Confidence            5433222333334443

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=3.6e-06  Score=44.55  Aligned_cols=73  Identities=21%  Similarity=0.420  Sum_probs=43.9

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeC--CEE---eecc----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VETS----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      +.+.+|++++|.|.........+.|||.  |..   +...    ................ ....|.+++.+|.+.|.|.
T Consensus        10 ~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~-~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1          10 LTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTD-FTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCE-EEeEECCcChhhCCCcccc
Confidence            3578999999999987656667899973  221   1100    0011112222222222 3456788899999999996


Q ss_pred             eEe
Q psy8666          72 ARN   74 (124)
Q Consensus        72 ~~~   74 (124)
                      ...
T Consensus        89 ~~~   91 (106)
T d1lk3l1          89 QSW   91 (106)
T ss_dssp             ECS
T ss_pred             ccc
Confidence            543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=9.6e-07  Score=46.98  Aligned_cols=72  Identities=19%  Similarity=0.358  Sum_probs=43.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEe---ecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV---ETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~---~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|++++|.|.........+.|||.  |..+   ... .   .....++....... .....|.+++.+|.+.|.|.+
T Consensus        12 ~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~-~~~L~I~~~~~~DsA~YyCa~   90 (107)
T d1mexl1          12 STSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGT-DFTLTINNVQSEDLAEYFCQQ   90 (107)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT-EEEEEESSCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCC-eeeeeechhheecceeEEEeE
Confidence            567899999999876555567899973  3221   100 0   00111122222222 234567889999999999975


Q ss_pred             Ee
Q psy8666          73 RN   74 (124)
Q Consensus        73 ~~   74 (124)
                      ..
T Consensus        91 ~~   92 (107)
T d1mexl1          91 YN   92 (107)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.36  E-value=3.7e-06  Score=45.04  Aligned_cols=73  Identities=25%  Similarity=0.334  Sum_probs=43.0

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeC--CEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKD--GELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      ...+|+.++|.|...+.  ....+.||+.  +.......................+...|.+++.+|.|.|.|.+..
T Consensus        11 ~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          11 TKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             EECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            46789999999988643  4456899973  3221111001111111112222234456788899999999998754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=2.2e-06  Score=45.65  Aligned_cols=86  Identities=21%  Similarity=0.388  Sum_probs=49.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE---eec-c---CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VET-S---KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|.........+.||+.  +..   +.. .   ................ ....|.+++.+|.+.|.|-.
T Consensus        12 ~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~i~~l~~~Dsa~YyCA~   90 (108)
T d1jhll_          12 VASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTD-FTLTISSLEPEDFAMYICQQ   90 (108)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSE-EEEEECSCCTTCCSEEEEEE
T ss_pred             EecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCE-EEeEeeeeEeccceEEEEee
Confidence            567899999999886655667999973  221   110 0   0001111222223332 33456788999999999976


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      .+.....+.....|.|
T Consensus        91 ~~~~~~~FG~GT~LtV  106 (108)
T d1jhll_          91 HNEYPWTFGGGTKLEI  106 (108)
T ss_dssp             CSSSSCEECCCEEEEE
T ss_pred             CCCcccEECCCeEEEE
Confidence            5543333344445554

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.8e-07  Score=48.16  Aligned_cols=73  Identities=18%  Similarity=0.270  Sum_probs=42.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEe--eccC-------CCCCceEEE--ccCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELV--ETSK-------SDAKSQRVI--LPTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~--~~~~-------~~~~~~~~~--~~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      ...+|+++.|.|.........+.|++.....  ....       .........  ...........|.+++.+|.|.|.|
T Consensus         5 ~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C   84 (97)
T d2nxyb1           5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC   84 (97)
T ss_dssp             EEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             EEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence            4578999999999876666788999854321  1110       000011111  0001111223567889999999999


Q ss_pred             EeEe
Q psy8666          71 LARN   74 (124)
Q Consensus        71 ~~~~   74 (124)
                      .+.+
T Consensus        85 ~v~~   88 (97)
T d2nxyb1          85 EVED   88 (97)
T ss_dssp             EETT
T ss_pred             EEec
Confidence            8765

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=5.3e-06  Score=44.06  Aligned_cols=71  Identities=17%  Similarity=0.239  Sum_probs=41.8

Q ss_pred             EecCCCEEEEEeeec-cCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEE--EEEEEcCCCccC-CeEEEEEeEeCC
Q psy8666           3 VAKNEPVTLNCKAEG-KPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLF--FLRVVHGKKEQD-GGVYWCLARNSV   76 (124)
Q Consensus         3 ~~~G~~~~l~C~~~~-~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~d-~g~y~C~~~~~~   76 (124)
                      +..|+.+.+.|.+.+ .|.+  .+.|++++..+........    ....+...  ....+ ...+.| ...|.|.+.+..
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~----~~~~~~~~~~s~l~~-~~~~~D~g~~ltC~a~~~~   87 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED----ADRKSLETKSLEVTF-TPVIEDIGKVLVCRAKLHI   87 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC----CSSCCCEEEEEEEEE-CCCGGGTTCEEEEEEEECS
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccc----cccCCcceeeEEEEc-cCChHHCCcEEEEEEEcCc
Confidence            468999999999864 5754  5889999987763211000    01111111  11121 224445 558999999876


Q ss_pred             cc
Q psy8666          77 GT   78 (124)
Q Consensus        77 ~~   78 (124)
                      +.
T Consensus        88 ~~   89 (109)
T d1vcaa1          88 DE   89 (109)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.34  E-value=4.4e-06  Score=44.24  Aligned_cols=73  Identities=21%  Similarity=0.378  Sum_probs=43.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE---eec-c---CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VET-S---KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+++.|.|.........+.||+.  |+.   +.. .   ......+......... ....|.+++.+|.+.|.|.+
T Consensus        11 ~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~-~~L~I~~~~~~Dsa~YyCa~   89 (106)
T d1op3k1          11 SASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTE-FTLTISGLQFDDFATYHCQH   89 (106)
T ss_dssp             EECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE-EEEEEESCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCE-EEEEEccccccCCCcEeeee
Confidence            567899999999886655667899974  221   110 0   0001112222222222 33456788999999999976


Q ss_pred             EeC
Q psy8666          73 RNS   75 (124)
Q Consensus        73 ~~~   75 (124)
                      ...
T Consensus        90 ~~~   92 (106)
T d1op3k1          90 YAG   92 (106)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.34  E-value=8.4e-06  Score=43.62  Aligned_cols=75  Identities=15%  Similarity=0.322  Sum_probs=45.7

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeCC--EE---eec-cCCCC---CceEEEc-cCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKDG--EL---VET-SKSDA---KSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~g--~~---~~~-~~~~~---~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      +.+.+|+.++|.|.........+.||+..  ..   +.. .....   ....... ..........|..++.+|.|.|.|
T Consensus        10 ~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~C   89 (114)
T d2cdea1          10 LIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYIC   89 (114)
T ss_dssp             EEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccce
Confidence            35789999999999876666789999732  11   110 00000   0111111 122234455668889999999999


Q ss_pred             EeEeC
Q psy8666          71 LARNS   75 (124)
Q Consensus        71 ~~~~~   75 (124)
                      .+...
T Consensus        90 a~~~~   94 (114)
T d2cdea1          90 VVSDR   94 (114)
T ss_dssp             EEECS
T ss_pred             eeecC
Confidence            88764

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=2e-06  Score=45.71  Aligned_cols=86  Identities=19%  Similarity=0.374  Sum_probs=48.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE---eecc-C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VETS-K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|++++|.|.........+.||+.  +..   +... .   ......+........ ....|..++.+|.+.|.|..
T Consensus        12 ~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~-~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d1d5il1          12 YASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQD-YSLTISSLEYEDMGIYYCLQ   90 (107)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCE-EEccccccCCcCCEEEEeee
Confidence            567899999999876655667899973  221   1100 0   000111221222222 34567888999999999976


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      .......+.....|.|
T Consensus        91 ~~~~~~~FG~GTkLtV  106 (107)
T d1d5il1          91 YDEFPYTFGSGTKLEI  106 (107)
T ss_dssp             CSSSSCEECCCEEEEE
T ss_pred             ccCCcceECCCEEEEE
Confidence            5433222333444443

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.31  E-value=6.2e-06  Score=44.08  Aligned_cols=75  Identities=16%  Similarity=0.352  Sum_probs=45.1

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--c--cCCC-----CCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--T--SKSD-----AKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~--~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      +.+.+|+.+.|.|.........+.|||.  |..+.  .  ....     ............ .....|.+++.+|.|.|.
T Consensus        10 v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~Dsg~Yy   88 (113)
T d2bnqd1          10 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSG-RSTLYIAASQPGDSATYL   88 (113)
T ss_dssp             EEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTT-EEEEEESSCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCC-EEEeeeecCCCCCCcEEe
Confidence            3578899999999987655567889983  32111  0  0000     001111112222 334457888999999999


Q ss_pred             EEeEeCC
Q psy8666          70 CLARNSV   76 (124)
Q Consensus        70 C~~~~~~   76 (124)
                      |.+....
T Consensus        89 Ca~~~~~   95 (113)
T d2bnqd1          89 CAVRPTS   95 (113)
T ss_dssp             EEEEESS
T ss_pred             EeEecCC
Confidence            9887544

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.29  E-value=5.5e-06  Score=44.31  Aligned_cols=73  Identities=25%  Similarity=0.377  Sum_probs=44.0

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeC--CEEeeccCCCCCceE-EEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKD--GELVETSKSDAKSQR-VILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~--g~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+..|+.++|.|...+.  ....+.||+.  |+...... ...... ....+....+...|.+++.+|.|.|.|.+...
T Consensus        10 t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~-~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          10 TKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESI-SKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             EECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEEC-CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             EEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeee-ccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecC
Confidence            46789999999987543  4567899973  32211110 011111 11223333345567888999999999976654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.29  E-value=1e-05  Score=42.97  Aligned_cols=72  Identities=17%  Similarity=0.344  Sum_probs=43.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE---eecc----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VETS----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.+.|.|...+.....+.||+.  ++.   +...    .............+... ...|..++.+|.+.|.|-+
T Consensus        14 ~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~-~L~I~~l~~~Dsa~YyCA~   92 (109)
T d1bwwa_          14 SASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDY-TFTISSLQPEDIATYYCQQ   92 (109)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE-EEEESSCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEe-EEEEeeceeCcCceEEEee
Confidence            567899999999987655667899973  221   1100    00111122222222222 3456888999999999976


Q ss_pred             Ee
Q psy8666          73 RN   74 (124)
Q Consensus        73 ~~   74 (124)
                      ..
T Consensus        93 ~~   94 (109)
T d1bwwa_          93 YQ   94 (109)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.29  E-value=7.1e-06  Score=43.72  Aligned_cols=76  Identities=16%  Similarity=0.310  Sum_probs=44.0

Q ss_pred             CEEecCCCEEEEEeeeccC--CCeEEEEeC--CEEee----ccCCC---CCceE-EEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVE----TSKSD---AKSQR-VILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~----~~~~~---~~~~~-~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      +.+.+|++++|.|...+..  ...+.|||.  ++.+.    .....   ...+. .............|.+++.+|.+.|
T Consensus        10 ~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Y   89 (111)
T d1cd0a_          10 VSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADY   89 (111)
T ss_dssp             EEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEE
Confidence            3578999999999876543  234899973  32211    00000   01111 1112222244455688899999999


Q ss_pred             EEEeEeCC
Q psy8666          69 WCLARNSV   76 (124)
Q Consensus        69 ~C~~~~~~   76 (124)
                      .|......
T Consensus        90 yCA~~~~~   97 (111)
T d1cd0a_          90 YCQSYDAR   97 (111)
T ss_dssp             EEEEEETT
T ss_pred             EEeeccCC
Confidence            99765543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.27  E-value=2.4e-05  Score=42.08  Aligned_cols=75  Identities=19%  Similarity=0.340  Sum_probs=45.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--c---c--C----C-CCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--T---S--K----S-DAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~---~--~----~-~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+.+.|.|.........+.|||.  |+.+.  .   .  .    . ...................|.+++.+|.|.
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~   91 (118)
T d2ij0c1          12 IVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSGF   91 (118)
T ss_dssp             EECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCEE
T ss_pred             EEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCce
Confidence            577899999999976666678999983  32211  0   0  0    0 001122222222223345678889999999


Q ss_pred             EEEEeEeCC
Q psy8666          68 YWCLARNSV   76 (124)
Q Consensus        68 y~C~~~~~~   76 (124)
                      |.|.+....
T Consensus        92 YyCa~~~~~  100 (118)
T d2ij0c1          92 YVCSALAGS  100 (118)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEecCC
Confidence            999876543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.26  E-value=7.3e-06  Score=43.61  Aligned_cols=72  Identities=19%  Similarity=0.418  Sum_probs=41.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEe---e-ccCCC------CCceEEE-ccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV---E-TSKSD------AKSQRVI-LPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~---~-~~~~~------~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|++++|.|.... ....+.|||.  |..+   . .....      ....... ...... ....|.+++.+|.|.|
T Consensus        12 ~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~~~~~Dsa~Y   89 (110)
T d2aq2a1          12 VAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQ-FSLILESATPSQTSVY   89 (110)
T ss_dssp             EECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTE-EEEEESSCCGGGCEEE
T ss_pred             EEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCE-EEEEECCCCHhhCEEE
Confidence            4678999999998654 4567899983  3211   1 00000      0011111 111222 3345678899999999


Q ss_pred             EEEeEeC
Q psy8666          69 WCLARNS   75 (124)
Q Consensus        69 ~C~~~~~   75 (124)
                      .|.....
T Consensus        90 yCa~~~~   96 (110)
T d2aq2a1          90 FCASGGG   96 (110)
T ss_dssp             EEEEEET
T ss_pred             EEeeCCC
Confidence            9976643

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=3.5e-05  Score=41.15  Aligned_cols=74  Identities=18%  Similarity=0.354  Sum_probs=43.7

Q ss_pred             CEEecCCCEEEEEeeecc-CCCeEEEEeC--CEEee----c-c---CCCCCceEEEc--cCCcEEEEEEEcCCCccCCeE
Q psy8666           1 MVVAKNEPVTLNCKAEGK-PEPTIEWYKD--GELVE----T-S---KSDAKSQRVIL--PTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~-p~p~v~w~k~--g~~~~----~-~---~~~~~~~~~~~--~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      +.+.+|+++.|.|..... ....+.|||.  |..+.    . .   ......+....  ..... ....|.+++.+|.|.
T Consensus         9 l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~-~~L~I~~~~~~Dsg~   87 (114)
T d3bp5a1           9 LTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHD-FHMNILDTRRNDSGI   87 (114)
T ss_dssp             EEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSE-EEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCE-EEEEECccCcCCCeE
Confidence            357899999999987543 3456889973  32111    0 0   00111222222  22222 334578889999999


Q ss_pred             EEEEeEeC
Q psy8666          68 YWCLARNS   75 (124)
Q Consensus        68 y~C~~~~~   75 (124)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (114)
T d3bp5a1          88 YLCGAISL   95 (114)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEeC
Confidence            99987654

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.2e-05  Score=41.40  Aligned_cols=75  Identities=21%  Similarity=0.385  Sum_probs=42.6

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeCCE--E---e-eccCC---CCCceEEE-ccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKDGE--L---V-ETSKS---DAKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~g~--~---~-~~~~~---~~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      ...+|+.+.|.|.....  ....+.|+|...  .   + .....   ........ .......+...|.+++.+|.|.|.
T Consensus         7 ~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~   86 (108)
T d1hkfa_           7 QSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYW   86 (108)
T ss_dssp             EECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             EEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEE
Confidence            46789999999986433  234568997321  1   1 11110   01111211 112222344557888999999999


Q ss_pred             EEeEeCC
Q psy8666          70 CLARNSV   76 (124)
Q Consensus        70 C~~~~~~   76 (124)
                      |......
T Consensus        87 C~v~~~~   93 (108)
T d1hkfa_          87 CRIYRPS   93 (108)
T ss_dssp             EEEECTT
T ss_pred             EEEecCC
Confidence            9877543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.20  E-value=4.4e-06  Score=44.86  Aligned_cols=75  Identities=19%  Similarity=0.293  Sum_probs=43.5

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeC--CEE--ee-c-cCC--C-CCceEEEc-cCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL--VE-T-SKS--D-AKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~--~~-~-~~~--~-~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      +.+.+|++++|.|.........+.|||.  |..  +. . ...  . ........ ..........|..++.+|.|.|.|
T Consensus        11 v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyC   90 (115)
T d1lp9e1          11 VTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYC   90 (115)
T ss_dssp             EEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceE
Confidence            3578999999999987666778999983  221  11 0 100  0 01111111 111111223467779999999999


Q ss_pred             EeEeC
Q psy8666          71 LARNS   75 (124)
Q Consensus        71 ~~~~~   75 (124)
                      .+...
T Consensus        91 a~~~~   95 (115)
T d1lp9e1          91 ALFLA   95 (115)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            76553

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.19  E-value=1.7e-05  Score=42.43  Aligned_cols=89  Identities=16%  Similarity=0.261  Sum_probs=48.2

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEe--CCEE--eecc--CCCC-----CceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYK--DGEL--VETS--KSDA-----KSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k--~g~~--~~~~--~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      +.+.+|++++|.|.......+.+.|||  .|..  +...  ....     .................|.+++.+|.|.|.
T Consensus        10 v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Yy   89 (115)
T d1i9ea_          10 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYF   89 (115)
T ss_dssp             EEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEE
T ss_pred             EEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceec
Confidence            357899999999997665567789997  2321  1110  0000     011111111111123456888999999999


Q ss_pred             EEeEeCCcc-ceeeeEEEEEE
Q psy8666          70 CLARNSVGT-AVSRNATLQVA   89 (124)
Q Consensus        70 C~~~~~~~~-~~~~~~~l~v~   89 (124)
                      |.+...... .......|.|.
T Consensus        90 Ca~~~~~~~~~FG~GT~L~V~  110 (115)
T d1i9ea_          90 CAVSGFASALTFGSGTKVIVL  110 (115)
T ss_dssp             EEEEETTEEEEECCCEEEEEE
T ss_pred             ccccCCCCCCEECCCEEEEEe
Confidence            976543211 12234455554

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=5.3e-06  Score=43.91  Aligned_cols=85  Identities=19%  Similarity=0.328  Sum_probs=47.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--cc--C---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--TS--K---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~~--~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.++|.|.........+.||+.  |..+.  ..  .   ...........+... ....|.+++.+|.+.|.|.+
T Consensus        11 ~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~L~I~~~~~~DsA~YyCa~   89 (106)
T d1a0ql1          11 SASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRD-YSFSISNLEPEDIATYYCLQ   89 (106)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTE-EEEEECSCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCE-eeeEehhhcccCCEeEEEEE
Confidence            578999999999876555567999973  22111  00  0   000111111122222 33457888999999999976


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      .... ........|.|
T Consensus        90 ~~~~-~~FG~GT~LtV  104 (106)
T d1a0ql1          90 YYNL-RTFGGGTKLEI  104 (106)
T ss_dssp             CSSS-CEECCCEEEEE
T ss_pred             eCCC-CeECCCeEEEE
Confidence            5432 12233444544

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.18  E-value=1.8e-05  Score=42.48  Aligned_cols=76  Identities=18%  Similarity=0.313  Sum_probs=43.8

Q ss_pred             CEEecCCCEEEEEeeecc-CCCeEEEEe--CCEEee--c--cCCC------CCceEEEc-cCCcEEEEEEEcCCCccCCe
Q psy8666           1 MVVAKNEPVTLNCKAEGK-PEPTIEWYK--DGELVE--T--SKSD------AKSQRVIL-PTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~-p~p~v~w~k--~g~~~~--~--~~~~------~~~~~~~~-~~~~~~~~~~i~~~~~~d~g   66 (124)
                      +.+.+|+.++|.|..... ....+.|||  .+..+.  .  ....      ...+.... ......+...|.+++.+|.|
T Consensus        10 ~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg   89 (116)
T d1tvda_          10 QTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSA   89 (116)
T ss_dssp             EEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccc
Confidence            357899999999987543 466789997  222111  0  0000      00111111 11122234567888999999


Q ss_pred             EEEEEeEeCC
Q psy8666          67 VYWCLARNSV   76 (124)
Q Consensus        67 ~y~C~~~~~~   76 (124)
                      .|.|......
T Consensus        90 ~YyCa~~~~~   99 (116)
T d1tvda_          90 TYYCAFTLPP   99 (116)
T ss_dssp             EEEEEEECTT
T ss_pred             cceeeEecCC
Confidence            9999766543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.17  E-value=5.7e-07  Score=47.88  Aligned_cols=72  Identities=15%  Similarity=0.374  Sum_probs=42.2

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--c--c---CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--T--S---KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~--~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      +.+.+|+.++|.|.........+.||+.  |..+.  .  .   ............... .....|.+++.+|.|.|.|.
T Consensus        11 ~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~-~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d3cx5k1          11 LAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGT-DYSLTISNLEPEDIATYFCQ   89 (107)
T ss_dssp             CCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETT-EEEEECSCCCSCCCSEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCC-EEEEEEeEeeecCCCcEEee
Confidence            3467899999999876656667899973  32211  0  0   000001111111122 23456788899999999996


Q ss_pred             eE
Q psy8666          72 AR   73 (124)
Q Consensus        72 ~~   73 (124)
                      ..
T Consensus        90 ~~   91 (107)
T d3cx5k1          90 HH   91 (107)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.16  E-value=8.1e-06  Score=43.53  Aligned_cols=73  Identities=18%  Similarity=0.332  Sum_probs=42.3

Q ss_pred             EEecCCCEEEEEeeecc----CCCeEEEEeC--CEEee----ccC---CCCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGK----PEPTIEWYKD--GELVE----TSK---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~----p~p~v~w~k~--g~~~~----~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|+.++|.|.....    ....+.||+.  |..+.    ...   ............. ......|.+++.+|.+.|
T Consensus        12 ~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~Dsa~Y   90 (111)
T d1j05a_          12 AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR-TDFTLIIDPVEADDVATY   90 (111)
T ss_dssp             ECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS-SEEEEEESSCCGGGCEEE
T ss_pred             EECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCC-CEEEEEEcccccccCccE
Confidence            46789999999986431    2334899973  33211    110   0111122222222 234556788999999999


Q ss_pred             EEEeEeC
Q psy8666          69 WCLARNS   75 (124)
Q Consensus        69 ~C~~~~~   75 (124)
                      .|.+.+.
T Consensus        91 yCa~~~~   97 (111)
T d1j05a_          91 YCQQTNE   97 (111)
T ss_dssp             EEEECSS
T ss_pred             EEeecCC
Confidence            9976543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=8.8e-06  Score=42.28  Aligned_cols=77  Identities=21%  Similarity=0.205  Sum_probs=46.0

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC----c
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV----G   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~----~   77 (124)
                      .+..|++++|.|.......-.+.|+|+|.....       .. ......  ....+..++..|.|.|.|......    .
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~-------~~-~~~~~~--a~F~l~~v~~~~~G~Y~C~y~~~~~p~~~   84 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLP-------QH-QSGEHP--ANFSLGPVDLNVSGIYRCYGWYNRSPYLW   84 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCC-------SE-EECSSS--EEEECCSCCGGGCEEEEEEEECTTSTTEE
T ss_pred             ccCCCCeEEEEEeCCCCCceEEEEEECCcccce-------EE-cCCCcc--cEEEEeccccccCcEEEEEEEcCCCCCCc
Confidence            367899999999863333446789999853321       11 111111  223456678999999999765432    2


Q ss_pred             cceeeeEEEEE
Q psy8666          78 TAVSRNATLQV   88 (124)
Q Consensus        78 ~~~~~~~~l~v   88 (124)
                      +..+..+.|.|
T Consensus        85 S~~Sd~leL~V   95 (96)
T d1ucta2          85 SFPSNALELVV   95 (96)
T ss_dssp             CCCCCCEEEEE
T ss_pred             cCCCCCEEEEE
Confidence            33355555554

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.15  E-value=7.7e-06  Score=43.36  Aligned_cols=72  Identities=21%  Similarity=0.397  Sum_probs=42.0

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeC--CEE---eec-cCC---CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKD--GEL---VET-SKS---DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~--g~~---~~~-~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.+.|.|..... ....+.|||.  |..   +.. ...   .............. ....|.+++.+|.|.|.|.
T Consensus        12 ~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~-~~L~I~~~~~~Dsa~YyCa   90 (108)
T d2fx7l1          12 SLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTD-FTLTISRLEPEDFAVYYCQ   90 (108)
T ss_dssp             EECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTE-EEEEESSCCGGGCSEEEEE
T ss_pred             EECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCE-EEEEehHheecccEEEeee
Confidence            57789999999987543 3446889973  321   110 000   01111222222222 3455688899999999997


Q ss_pred             eEe
Q psy8666          72 ARN   74 (124)
Q Consensus        72 ~~~   74 (124)
                      +..
T Consensus        91 ~~~   93 (108)
T d2fx7l1          91 QYG   93 (108)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            654

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.14  E-value=3.1e-05  Score=41.20  Aligned_cols=86  Identities=19%  Similarity=0.346  Sum_probs=47.0

Q ss_pred             EEecCCCEEEEEeeecc-C---CCeEEEEeC--CEEe---ecc----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGK-P---EPTIEWYKD--GELV---ETS----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p---~p~v~w~k~--g~~~---~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|+.++|.|..... .   ...+.||+.  |..+   ...    ......+........ .....|..++.+|.+.|
T Consensus        12 s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~-~~~L~I~~~~~~DsA~Y   90 (111)
T d2gsia1          12 AVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGT-DFTLNIHPVEEEDAATY   90 (111)
T ss_dssp             EEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEEE
T ss_pred             EECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCC-chhcccccccccCCceE
Confidence            57899999999986532 2   234889973  3221   110    001111222222222 23456788899999999


Q ss_pred             EEEeEeCCccceeeeEEEEE
Q psy8666          69 WCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l~v   88 (124)
                      .|.+.............|.|
T Consensus        91 yCa~~~~~~~~FG~GT~LtV  110 (111)
T d2gsia1          91 YCSHIRELPRSSGGGTKLEI  110 (111)
T ss_dssp             EEEECSSSSCEECCCEEEEE
T ss_pred             EEEECCCCCCEECCCEEEEE
Confidence            99765443333333444444

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.9e-05  Score=40.11  Aligned_cols=69  Identities=17%  Similarity=0.295  Sum_probs=42.6

Q ss_pred             cCCCEEEEEeeec-cCCCeEEEEeCCEEeeccCCCCCceEEEcc-CCcEEEEEEEcCCCccCCeEEEEEeEeCCcc
Q psy8666           5 KNEPVTLNCKAEG-KPEPTIEWYKDGELVETSKSDAKSQRVILP-TGSLFFLRVVHGKKEQDGGVYWCLARNSVGT   78 (124)
Q Consensus         5 ~G~~~~l~C~~~~-~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~   78 (124)
                      .++.+.|.|.+.| .|.+.+.|+++|..+....    ....... .+...+... ..+...+...|.|.+......
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~----~~~~~~~~~g~y~v~S~-L~v~~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAIN----TTVSQDPETELYAVSSK-LDFNMTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSE----EEEEECTTTCCEEEEEE-EEEETTSCEEEEEEEEETTCC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccc----eeeEecCCCccEEEEEE-EEccCCccceEEEEEEecCCC
Confidence            4666889999986 5888999999998775321    1111222 233222222 122455678999999886543

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.13  E-value=3e-05  Score=41.12  Aligned_cols=88  Identities=20%  Similarity=0.331  Sum_probs=49.2

Q ss_pred             CEEecCCCEEEEEeeecc-CCCeEEEEeC--CEEee----ccC---CCCCceEEEccCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGK-PEPTIEWYKD--GELVE----TSK---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~-p~p~v~w~k~--g~~~~----~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      +.+.+|++++|.|..... ....+.|||.  |..+.    ...   .............. .....|.+++.+|.|.|.|
T Consensus         8 vsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~Dsa~YyC   86 (110)
T d2esvd1           8 MDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRK-SSTLILPHATLRDTAVYYC   86 (110)
T ss_dssp             EEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCS-EEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCC-eeeehhcccccCCceEEEE
Confidence            357889999999986543 3456889983  32211    000   01111222223333 3445568889999999999


Q ss_pred             EeEeCCcc---ceeeeEEEEEE
Q psy8666          71 LARNSVGT---AVSRNATLQVA   89 (124)
Q Consensus        71 ~~~~~~~~---~~~~~~~l~v~   89 (124)
                      .+....+.   .......|.|.
T Consensus        87 a~~~~~~~~~~~FG~GT~L~V~  108 (110)
T d2esvd1          87 IVVRSSNTGKLIFGQGTTLQVK  108 (110)
T ss_dssp             EEEESCSSCCCCCCCCEEEEEE
T ss_pred             EEeCCCCCCccEECCCEEEEEE
Confidence            87543221   12234556653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.13  E-value=3.2e-05  Score=41.23  Aligned_cols=86  Identities=17%  Similarity=0.358  Sum_probs=47.4

Q ss_pred             EEecCCCEEEEEeeeccC-----CCeEEEEeC--CEEee--c-c----CCCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGKP-----EPTIEWYKD--GELVE--T-S----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p-----~p~v~w~k~--g~~~~--~-~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+.++|.|...+..     ...+.||+.  |..+.  . .    .............+.. ....|.+++.+|.+.
T Consensus        12 s~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~-~~L~I~~~~~eDsAv   90 (112)
T d1ncwl1          12 SVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTD-FTLKISRVEAEDLGV   90 (112)
T ss_dssp             EEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEE
T ss_pred             EECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCE-EEEEECccccCcCEe
Confidence            577899999999865322     245889973  32211  0 0    0001111211122222 345678889999999


Q ss_pred             EEEEeEeCCccceeeeEEEEE
Q psy8666          68 YWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      |.|...+.....+.....|.|
T Consensus        91 YYC~~~~~~~~~FG~GTkLtV  111 (112)
T d1ncwl1          91 YYCWQGTHFPYTFGGGTKLEI  111 (112)
T ss_dssp             EEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEcCCCcccEECCCeEEEE
Confidence            999655444333344445554

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.12  E-value=2.5e-05  Score=41.31  Aligned_cols=73  Identities=21%  Similarity=0.317  Sum_probs=43.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee---ccCCCC-----CceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE---TSKSDA-----KSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.++|.|.........+.||+.  |....   ......     .................|.+++.+|.|.|.|.
T Consensus        10 ~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (110)
T d1u3ha1          10 TVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCA   89 (110)
T ss_dssp             EEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEEC
T ss_pred             EEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeee
Confidence            578999999999876544556899974  22111   000000     01111111222234556788999999999997


Q ss_pred             eEe
Q psy8666          72 ARN   74 (124)
Q Consensus        72 ~~~   74 (124)
                      +..
T Consensus        90 ~~~   92 (110)
T d1u3ha1          90 ASA   92 (110)
T ss_dssp             CEE
T ss_pred             ecC
Confidence            654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.12  E-value=7.8e-05  Score=39.49  Aligned_cols=87  Identities=18%  Similarity=0.273  Sum_probs=48.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--c--cCCCC---CceEE-EccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--T--SKSDA---KSQRV-ILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~--~~~~~---~~~~~-~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.++|.|.........+.||+.  |..+.  .  .....   ..... ............|..++.+|.|.|.|.
T Consensus        11 ~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   90 (111)
T d1bd2d1          11 SVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCA   90 (111)
T ss_dssp             EEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEee
Confidence            578999999999876656667899973  32211  0  00000   01111 111222234445788899999999997


Q ss_pred             eEeCCcc-ceeeeEEEEE
Q psy8666          72 ARNSVGT-AVSRNATLQV   88 (124)
Q Consensus        72 ~~~~~~~-~~~~~~~l~v   88 (124)
                      +...... .....+.|.|
T Consensus        91 ~~~~~~~~~FG~GT~LtV  108 (111)
T d1bd2d1          91 AMEGAQKLVFGQGTRLTI  108 (111)
T ss_dssp             EESSTTCEEECCCEEEEE
T ss_pred             ccCCCCCcEeCCCEEEEE
Confidence            6532211 1233445555

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.12  E-value=1.5e-05  Score=42.57  Aligned_cols=72  Identities=21%  Similarity=0.413  Sum_probs=42.0

Q ss_pred             EEecCCCEEEEEeeecc-----CCCeEEEEeC--CEEee----ccC---CCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGK-----PEPTIEWYKD--GELVE----TSK---SDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-----p~p~v~w~k~--g~~~~----~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+.++|.|...+.     ....+.||+.  |..+.    ...   .....+........ .....|.+++.+|.+.
T Consensus        12 sv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~-~~~L~Is~~~~~DsAv   90 (112)
T d1mjul1          12 PVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGT-AFTLRISRVEAEDVGV   90 (112)
T ss_dssp             EECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSS-EEEEEESSCCGGGCEE
T ss_pred             EECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCC-EEEEEECCccccCCce
Confidence            46789999999987542     2346899973  32211    110   01111222222233 3445678899999999


Q ss_pred             EEEEeEe
Q psy8666          68 YWCLARN   74 (124)
Q Consensus        68 y~C~~~~   74 (124)
                      |.|....
T Consensus        91 YyCa~~~   97 (112)
T d1mjul1          91 YYCLQHL   97 (112)
T ss_dssp             EEEEECS
T ss_pred             EEEEeCC
Confidence            9996443

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.11  E-value=2.3e-05  Score=41.88  Aligned_cols=86  Identities=16%  Similarity=0.371  Sum_probs=47.8

Q ss_pred             EEecCCCEEEEEeeecc-----CCCeEEEEeC--CEEee----cc---CCCCCceEEEccCCcEEEEEEEcCCCccCCeE
Q psy8666           2 VVAKNEPVTLNCKAEGK-----PEPTIEWYKD--GELVE----TS---KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-----p~p~v~w~k~--g~~~~----~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      .+.+|+.++|.|...+.     ....+.||+.  |....    ..   .......+........ ....|..++.+|.+.
T Consensus        13 ~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~-~~L~I~~~~~~Dsav   91 (113)
T d1n4xl_          13 PVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTD-FTLKISRVEAEDLGI   91 (113)
T ss_dssp             EECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSE-EEEEESSCCGGGCEE
T ss_pred             EECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCc-ccCccCCCCcccCEE
Confidence            56789999999987542     2346899973  32111    00   0011112222222332 345678889999999


Q ss_pred             EEEEeEeCCccceeeeEEEEE
Q psy8666          68 YWCLARNSVGTAVSRNATLQV   88 (124)
Q Consensus        68 y~C~~~~~~~~~~~~~~~l~v   88 (124)
                      |.|...+.....+.....|.|
T Consensus        92 YyCa~~~~~~~~FG~GTkLtV  112 (113)
T d1n4xl_          92 YYCFQGSHFPPTFGGGTKLEI  112 (113)
T ss_dssp             EEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEECCCCCCEECCCEEEEE
Confidence            999655443333333445544

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=8.4e-06  Score=43.43  Aligned_cols=73  Identities=18%  Similarity=0.324  Sum_probs=42.3

Q ss_pred             EEecCCCEEEEEeeeccCCC---eEEEEe--CCEEeec----cC-C--CCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP---TIEWYK--DGELVET----SK-S--DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p---~v~w~k--~g~~~~~----~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|++++|.|...+....   .+.||+  .|+.+..    .. +  ....++....... .....|.+++.+|.|.|.
T Consensus        11 svs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~-~~~L~I~~~~~~Dsa~Yy   89 (110)
T d1oaql_          11 TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGN-KAALTITGAQTEDEAIYF   89 (110)
T ss_dssp             EECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETT-EEEEEEESCCGGGCEEEE
T ss_pred             EeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeeccccc-ceeeecCCCCccccEeEE
Confidence            57789999999998643322   388997  3332211    00 0  0111222222222 234556788999999999


Q ss_pred             EEeEeC
Q psy8666          70 CLARNS   75 (124)
Q Consensus        70 C~~~~~   75 (124)
                      |.....
T Consensus        90 Ca~~~~   95 (110)
T d1oaql_          90 CALWYS   95 (110)
T ss_dssp             EEEEET
T ss_pred             EEcccC
Confidence            986653

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.09  E-value=6e-05  Score=38.99  Aligned_cols=81  Identities=16%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC----c
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV----G   77 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~----~   77 (124)
                      .+..|++++|.|... .....+.++|+|......     ................|..++..|.|.|.|.-....    .
T Consensus        12 ~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~-----~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~w   85 (96)
T d1nkra1          12 LVKSEETVILQCWSD-VMFEHFLLHREGMFNDTL-----RLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQV   85 (96)
T ss_dssp             EEETTCCEEEEEEES-SCCSEEEEEEESSSCEEE-----EEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCC
T ss_pred             ccCCCCcEEEEECCC-CCCCEEEEEECCCcCCce-----eeeeeecCCceEEEEEEcccCcccCeEEEEEEEcCCCCCcc
Confidence            467899999999864 234556778876432110     000011223333344567779999999999765432    2


Q ss_pred             cceeeeEEEEE
Q psy8666          78 TAVSRNATLQV   88 (124)
Q Consensus        78 ~~~~~~~~l~v   88 (124)
                      +..|..+.|.|
T Consensus        86 S~pSdpLeL~V   96 (96)
T d1nkra1          86 SAPSDPLDIVI   96 (96)
T ss_dssp             CCCCCCEEEEE
T ss_pred             cCCCCCEEEEC
Confidence            33355555543

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.09  E-value=5.8e-05  Score=40.17  Aligned_cols=75  Identities=23%  Similarity=0.334  Sum_probs=43.8

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeC--CEEee----ccCCCCC------ceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKD--GELVE----TSKSDAK------SQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~--g~~~~----~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|++++|.|..... ....+.|||.  +..+.    .......      .......... .....|..++.+|.|.|
T Consensus        11 ~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~Dsg~Y   89 (114)
T d2ak4d1          11 SVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTS-SFNFTITASQVVDSAVY   89 (114)
T ss_dssp             EEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTT-EEEEEESSCCGGGCEEE
T ss_pred             EEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCC-EEEEeecccccccCCCc
Confidence            57899999999986533 3456889983  32211    0000010      0111122222 34456788899999999


Q ss_pred             EEEeEeCCc
Q psy8666          69 WCLARNSVG   77 (124)
Q Consensus        69 ~C~~~~~~~   77 (124)
                      .|.+....+
T Consensus        90 yCa~~~~~~   98 (114)
T d2ak4d1          90 FCALSGFYN   98 (114)
T ss_dssp             EEEEECSBT
T ss_pred             eEeCCCCCC
Confidence            997765443

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.09  E-value=1.2e-05  Score=42.79  Aligned_cols=72  Identities=21%  Similarity=0.377  Sum_probs=43.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE---ee-cc---CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VE-TS---KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.++|.|.........+.||+.  +..   +. ..   ............... .....|.+++.+|.|.|.|.+
T Consensus        12 ~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~-~~~L~I~~~~~~DSa~YyCA~   90 (109)
T d1mqkl_          12 SASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGT-QFSLKINSLLPEDFGSYYCQH   90 (109)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCC-EEEEEEccccccCCeeEEEee
Confidence            467899999999986555667999983  221   11 10   001111222222222 234566888999999999976


Q ss_pred             Ee
Q psy8666          73 RN   74 (124)
Q Consensus        73 ~~   74 (124)
                      ..
T Consensus        91 ~~   92 (109)
T d1mqkl_          91 HY   92 (109)
T ss_dssp             CS
T ss_pred             eC
Confidence            53

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=5.5e-05  Score=40.19  Aligned_cols=73  Identities=23%  Similarity=0.392  Sum_probs=43.2

Q ss_pred             CEEecCCCEEEEEeeeccC-CCeEEEEeC--CEEee----ccCC---CCCceEEEccCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKP-EPTIEWYKD--GELVE----TSKS---DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p-~p~v~w~k~--g~~~~----~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      +.+.+|++++|.|...+.. ...+.|||.  |+.+.    ....   ............. .....|..++.+|.|.|.|
T Consensus         8 ~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~Dsa~YyC   86 (112)
T d1kgcd1           8 MESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRK-SSTLILHRATLRDAAVYYC   86 (112)
T ss_dssp             EEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSS-EEEEEESSCCGGGCEEEEE
T ss_pred             EEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCC-eeEEEEeecccccceeEee
Confidence            3567899999999876543 455899983  33221    1000   0111222222232 2345568889999999999


Q ss_pred             EeEe
Q psy8666          71 LARN   74 (124)
Q Consensus        71 ~~~~   74 (124)
                      ....
T Consensus        87 a~~~   90 (112)
T d1kgcd1          87 ILPL   90 (112)
T ss_dssp             ECCC
T ss_pred             eEec
Confidence            7654

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=1e-05  Score=43.31  Aligned_cols=75  Identities=16%  Similarity=0.261  Sum_probs=43.3

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeC--CEE---ee-ccCCCC----CceEE-EccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VE-TSKSDA----KSQRV-ILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~-~~~~~~----~~~~~-~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      +.+.+|+.+.|.|.........+.|||.  |+.   +. ......    ..... ............|..++.+|.|.|.
T Consensus        10 v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   89 (115)
T d1j8hd1          10 VSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYF   89 (115)
T ss_dssp             EEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccce
Confidence            3578999999999987655677999973  221   11 010000    01111 1111111122356788999999999


Q ss_pred             EEeEeC
Q psy8666          70 CLARNS   75 (124)
Q Consensus        70 C~~~~~   75 (124)
                      |.+...
T Consensus        90 Ca~~~~   95 (115)
T d1j8hd1          90 CAVSES   95 (115)
T ss_dssp             EEEESS
T ss_pred             eeecCC
Confidence            987653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.07  E-value=3.4e-05  Score=41.09  Aligned_cols=88  Identities=14%  Similarity=0.340  Sum_probs=48.6

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeC--CEEee----ccCC-C--CCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE----TSKS-D--AKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~----~~~~-~--~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      +.+.+|+.+.|.|.... ....+.|||.  +..+.    .... .  ..................|..++.+|.|.|.|.
T Consensus        11 ~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (113)
T d1h5ba_          11 LSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCA   89 (113)
T ss_dssp             EEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEE
Confidence            35789999999998754 4557899983  22111    0000 0  001111111222233455688899999999998


Q ss_pred             eEeCCcc---ceeeeEEEEEE
Q psy8666          72 ARNSVGT---AVSRNATLQVA   89 (124)
Q Consensus        72 ~~~~~~~---~~~~~~~l~v~   89 (124)
                      +....+.   .......|.|.
T Consensus        90 ~~~~~~~~~~~FG~GT~L~V~  110 (113)
T d1h5ba_          90 AEASSGSWQLIFGSGTQLTVM  110 (113)
T ss_dssp             EECSSSSSSCEECCCEEEEEE
T ss_pred             ecCCCCCCeeEECcCEEEEEE
Confidence            7654322   12334455553

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.2e-05  Score=41.90  Aligned_cols=88  Identities=15%  Similarity=0.191  Sum_probs=46.5

Q ss_pred             EEecCCCEEEEEeeecc---CCCeEEEEeCCE--E---eeccC-C---CCCceE-EEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGK---PEPTIEWYKDGE--L---VETSK-S---DAKSQR-VILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~---p~p~v~w~k~g~--~---~~~~~-~---~~~~~~-~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|+++.|.|.....   ....+.|+|...  .   +.... .   ...... .........+...|.+++.+|.|.|
T Consensus        10 ~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y   89 (116)
T d1xeda_          10 NSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRY   89 (116)
T ss_dssp             EEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCEEE
Confidence            56789999999986421   234578987431  1   11110 0   001111 1111222223445788899999999


Q ss_pred             EEEeEeCCccceeeeEEEEEEe
Q psy8666          69 WCLARNSVGTAVSRNATLQVAV   90 (124)
Q Consensus        69 ~C~~~~~~~~~~~~~~~l~v~~   90 (124)
                      .|.+.... ......+.|.|..
T Consensus        90 ~C~v~~~~-~~~~~~v~L~V~~  110 (116)
T d1xeda_          90 KCGLGINS-RGLSFDVSLEVLE  110 (116)
T ss_dssp             EEEESCGG-GCCEEEEEEEEEC
T ss_pred             EEEEEcCC-CCceEeEEEEEEC
Confidence            99876433 2223345555543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.05  E-value=2.5e-05  Score=41.81  Aligned_cols=88  Identities=16%  Similarity=0.259  Sum_probs=49.1

Q ss_pred             CEEecCCCEEEEEeeecc--CCCeEEEEeCC--EE--eecc---CC--CCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGK--PEPTIEWYKDG--EL--VETS---KS--DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~--p~p~v~w~k~g--~~--~~~~---~~--~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      +.+.+|++++|.|...+.  ....+.||+..  ..  +...   ..  ....+........ .....|.+++.+|.+.|.
T Consensus        10 ~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_          10 ASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGT-SASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETT-EEEEEESSCCGGGCEEEE
T ss_pred             EEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCC-eeeeEecccCcccCceEE
Confidence            357789999999987654  34678999742  21  1110   00  0111222222222 234567888999999999


Q ss_pred             EEeEeCCcc--ceeeeEEEEEE
Q psy8666          70 CLARNSVGT--AVSRNATLQVA   89 (124)
Q Consensus        70 C~~~~~~~~--~~~~~~~l~v~   89 (124)
                      |........  .......|.|.
T Consensus        89 CA~~~~~~~~~~FG~GT~LtVl  110 (114)
T d2rhea_          89 CAAWNDSLDEPGFGGGTKLTVL  110 (114)
T ss_dssp             EEEEETTTTEEEECCCEEEEEC
T ss_pred             EeecCCCCCCCEECCCeEEEEC
Confidence            976542211  12334456654

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=4.8e-05  Score=40.71  Aligned_cols=72  Identities=11%  Similarity=0.183  Sum_probs=40.0

Q ss_pred             EEecCCCEEEEEeeeccCCC---eEEEEeC--CEEe--eccCCCCCce--------EEEccCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP---TIEWYKD--GELV--ETSKSDAKSQ--------RVILPTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p---~v~w~k~--g~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+..|+.+.|.|.......+   .+.|||.  |+.+  ..........        .....+.. .....|.+++.+|.|
T Consensus        10 ~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~l~~~Dsa   88 (117)
T d1dqta_          10 LASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNES-RVNLTIQGLRAVDTG   88 (117)
T ss_dssp             ECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETT-EEEEEECSCCGGGCE
T ss_pred             EEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCC-EEEEEhhcCccccCE
Confidence            45689999999997543222   3789983  3321  1100000000        01111111 234467888999999


Q ss_pred             EEEEEeEe
Q psy8666          67 VYWCLARN   74 (124)
Q Consensus        67 ~y~C~~~~   74 (124)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (117)
T d1dqta_          89 LYLCKVEL   96 (117)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEec
Confidence            99997654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.8e-05  Score=40.08  Aligned_cols=76  Identities=18%  Similarity=0.152  Sum_probs=43.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe-CC-ccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN-SV-GTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~-~~-~~~   79 (124)
                      .+..|++++|.|.... +.-.+.|+|+|.....       . .... .. .....|..++..|.|.|+|.... .. .+.
T Consensus        14 ~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~-------~-~~~~-~~-~a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~   82 (93)
T d1olla2          14 EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV-------Q-RGYG-KV-QAEFPLGPVTTAHRGTYRCFGSYNNHAWSF   82 (93)
T ss_dssp             EEETTCEEEEEEECSS-SCSEEEEEEESSSCEE-------E-EEEC-SS-EEEEEEEECCGGGCEEEEEECEEETTEECC
T ss_pred             cccCCCcEEEEECCCC-CCCEEEEEECCCccce-------e-ecCC-Cc-eeEEEecccChhcCceEEEEeECCCCCcCC
Confidence            4678999999998632 4456778888754321       1 1111 11 12223455589999999996432 22 233


Q ss_pred             eeeeEEEEE
Q psy8666          80 VSRNATLQV   88 (124)
Q Consensus        80 ~~~~~~l~v   88 (124)
                      .|..+.|.|
T Consensus        83 ~SdpLeL~V   91 (93)
T d1olla2          83 PSEPVKLLV   91 (93)
T ss_dssp             CCCCEEEEE
T ss_pred             CCCCEEEEe
Confidence            355555554

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.02  E-value=7.3e-05  Score=39.61  Aligned_cols=72  Identities=25%  Similarity=0.497  Sum_probs=41.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEeec-----c---C--C-CCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVET-----S---K--S-DAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~~-----~---~--~-~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|++++|.|.... ....+.|||.  |..+..     .   .  . ...............+...|.+++.+|.|.|
T Consensus        10 ~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~Y   88 (111)
T d2esve1          10 VIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVY   88 (111)
T ss_dssp             EEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEE
T ss_pred             EECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceE
Confidence            5789999999997543 3457899973  321110     0   0  0 0111122222222223455688899999999


Q ss_pred             EEEeEe
Q psy8666          69 WCLARN   74 (124)
Q Consensus        69 ~C~~~~   74 (124)
                      .|.+..
T Consensus        89 yCa~~~   94 (111)
T d2esve1          89 FCASSQ   94 (111)
T ss_dssp             EEEEES
T ss_pred             EEeeeC
Confidence            997543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=8.3e-05  Score=39.44  Aligned_cols=72  Identities=18%  Similarity=0.319  Sum_probs=41.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEe---e---cc----CC-CCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV---E---TS----KS-DAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~---~---~~----~~-~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      .+.+|+.++|.|.... ....+.|||.  ++.+   .   ..    .. ...................|.+++.+|.+.|
T Consensus        10 ~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   88 (112)
T d1kgce1          10 VAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVY   88 (112)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEE
T ss_pred             EECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEE
Confidence            5689999999998543 4567899983  2211   0   00    00 0111121211221223345688899999999


Q ss_pred             EEEeEe
Q psy8666          69 WCLARN   74 (124)
Q Consensus        69 ~C~~~~   74 (124)
                      .|.+..
T Consensus        89 yCa~~~   94 (112)
T d1kgce1          89 LCASSL   94 (112)
T ss_dssp             EEEEES
T ss_pred             EEeeeC
Confidence            997653

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.99  E-value=0.00014  Score=37.34  Aligned_cols=69  Identities=17%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeC--CEE--eeccCCC----CCceEEE-ccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKD--GEL--VETSKSD----AKSQRVI-LPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~--g~~--~~~~~~~----~~~~~~~-~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      |++++|.|.........+.|||.  ++.  +......    ....... ...........|..++.+|.|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            78999999987667778999973  221  1100000    0011111 11222234456788899999999997654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.99  E-value=2.4e-05  Score=40.76  Aligned_cols=77  Identities=22%  Similarity=0.238  Sum_probs=42.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCc--EEEEEEEcCCCccCCeEEEEEeEeCC---
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGS--LFFLRVVHGKKEQDGGVYWCLARNSV---   76 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~d~g~y~C~~~~~~---   76 (124)
                      .+..|++++|.|.... +.-.+.|+|+|......     ..........  ..+...    ...|.|.|+|......   
T Consensus        16 ~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~-----~~~~~~~~~~~~f~~~~~----~~~~~G~Y~C~y~~~~~p~   85 (99)
T d1nkra2          16 TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR-----LPAGPKVNGTFQADFPLG----PATHGGTYRCFGSFHDSPY   85 (99)
T ss_dssp             EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE-----EECEEEETTEEEEEEEEE----ECCSCEEEEEEEEETTEEE
T ss_pred             cccCCCeEEEEECCCC-CccEEEEEECCCccccE-----EEccccCCccEEEEEecc----ccccCEEEEEEeecCCCCC
Confidence            3678999999997643 45567889988543211     0001111111  122222    6778999999755432   


Q ss_pred             -ccceeeeEEEEE
Q psy8666          77 -GTAVSRNATLQV   88 (124)
Q Consensus        77 -~~~~~~~~~l~v   88 (124)
                       .+..|..+.|.|
T Consensus        86 ~wS~~SdpLeL~V   98 (99)
T d1nkra2          86 EWSKSSDPLLVSV   98 (99)
T ss_dssp             EECCCCCCEEEEE
T ss_pred             CccCCCCCEEEEE
Confidence             233355555544

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.95  E-value=0.00013  Score=38.71  Aligned_cols=72  Identities=15%  Similarity=0.219  Sum_probs=41.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEe--CCEEeeccCC----------CCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYK--DGELVETSKS----------DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k--~g~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|.... ....+.|||  .+..+..-.+          ...............+...|.+++.+|.+.|.
T Consensus        10 ~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (113)
T d2ntsp1          10 IKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYL   88 (113)
T ss_dssp             EEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEE
T ss_pred             EECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeee
Confidence            5789999999998644 346789998  3332210000          00111111111111233457888999999999


Q ss_pred             EEeEe
Q psy8666          70 CLARN   74 (124)
Q Consensus        70 C~~~~   74 (124)
                      |.+..
T Consensus        89 CA~~~   93 (113)
T d2ntsp1          89 CASSL   93 (113)
T ss_dssp             EEEES
T ss_pred             eeeeC
Confidence            97654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.93  E-value=2.2e-05  Score=41.69  Aligned_cols=73  Identities=14%  Similarity=0.323  Sum_probs=43.3

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeC--CEEee----ccCCC---CCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE----TSKSD---AKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~----~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      +.+.+|++++|.|.........+.||+.  |..+.    .....   ............ .....|.+++.+|.+.|.|.
T Consensus        10 l~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1          10 VSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGN-MATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETT-EEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCC-ccceEEeeeccCCCEEEEEE
Confidence            3577899999999865544556899973  32211    11000   111121222222 23445788899999999997


Q ss_pred             eEe
Q psy8666          72 ARN   74 (124)
Q Consensus        72 ~~~   74 (124)
                      ...
T Consensus        89 ~~~   91 (109)
T d1w72l1          89 VWD   91 (109)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.0001  Score=39.27  Aligned_cols=72  Identities=18%  Similarity=0.265  Sum_probs=42.1

Q ss_pred             EEecCCCEEEEEeeecc-CCCeEEEEeCC--EE----e--eccCC-------CCCceEEEccCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGK-PEPTIEWYKDG--EL----V--ETSKS-------DAKSQRVILPTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~-p~p~v~w~k~g--~~----~--~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~d~   65 (124)
                      ++.+|++++|.|..... ....+.|||..  ..    +  .....       ....+........ .....|.+++.+|.
T Consensus        11 t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~-~~~L~I~~l~~~Ds   89 (114)
T d1akjd_          11 TWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGD-TFVLTLSDFRRENE   89 (114)
T ss_dssp             CCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETT-EEEEEESSCCGGGC
T ss_pred             eccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCC-ChhcEEccCCCCCC
Confidence            46789999999987543 34568999832  11    1  00000       0011122222222 23456788899999


Q ss_pred             eEEEEEeEe
Q psy8666          66 GVYWCLARN   74 (124)
Q Consensus        66 g~y~C~~~~   74 (124)
                      |.|.|.+..
T Consensus        90 g~YyCa~~~   98 (114)
T d1akjd_          90 GYYFCSALS   98 (114)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEeEeEcC
Confidence            999998664

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.86  E-value=0.00017  Score=38.29  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=39.4

Q ss_pred             EEecCCCEEEEEeeecc----CCCeEEEEeC--CE----Eeec---------cCCCCCceEEEccC-CcEEEEEEEcCCC
Q psy8666           2 VVAKNEPVTLNCKAEGK----PEPTIEWYKD--GE----LVET---------SKSDAKSQRVILPT-GSLFFLRVVHGKK   61 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~----p~p~v~w~k~--g~----~~~~---------~~~~~~~~~~~~~~-~~~~~~~~i~~~~   61 (124)
                      .+..|+.+.|.|.....    ....+.|++.  +.    .+..         .......+.....+ ........|.+++
T Consensus        10 ~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   89 (119)
T d1neua_          10 YGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLD   89 (119)
T ss_dssp             EEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCC
T ss_pred             EEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCC
Confidence            45679999999986432    2346899862  21    1100         00000011111110 0000123467779


Q ss_pred             ccCCeEEEEEeEeCCc
Q psy8666          62 EQDGGVYWCLARNSVG   77 (124)
Q Consensus        62 ~~d~g~y~C~~~~~~~   77 (124)
                      ..|.|.|.|.+.+..+
T Consensus        90 ~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          90 YSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             GGGCEEEEEEEEC---
T ss_pred             hHHCEEEEEEEEECCC
Confidence            9999999999987543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.86  E-value=0.00033  Score=37.26  Aligned_cols=87  Identities=17%  Similarity=0.331  Sum_probs=49.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEe--ecc-CCCC----CceE-EEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV--ETS-KSDA----KSQR-VILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~--~~~-~~~~----~~~~-~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      .+.+|+.+.|.|...+ ....+.||+.  |..+  ... ....    .... .............|.+++.+|.|.|.|.
T Consensus        11 ~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (115)
T d1ogad1          11 SIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCA   89 (115)
T ss_dssp             EEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEE
T ss_pred             EECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEccc
Confidence            5789999999998754 3457899983  2211  100 0000    0111 1112222234456788999999999997


Q ss_pred             eEeCCcc-ceeeeEEEEEE
Q psy8666          72 ARNSVGT-AVSRNATLQVA   89 (124)
Q Consensus        72 ~~~~~~~-~~~~~~~l~v~   89 (124)
                      +....+. .+.....|.|.
T Consensus        90 ~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          90 GAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             EECTTSSEEECCCEEEEEE
T ss_pred             ccCCCCCcEECCCEEEEEe
Confidence            7644322 23445667765

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.85  E-value=7.1e-05  Score=39.75  Aligned_cols=74  Identities=14%  Similarity=0.311  Sum_probs=42.4

Q ss_pred             CEEecCCCEEEEEeeeccC---CCeEEEEeC--CEEe---ec-cCC---CCCceEEEccCCcEEEEEEEcCCCccCCeEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKP---EPTIEWYKD--GELV---ET-SKS---DAKSQRVILPTGSLFFLRVVHGKKEQDGGVY   68 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p---~p~v~w~k~--g~~~---~~-~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y   68 (124)
                      +.+.+|+++.|.|...+..   ...+.|||.  |..+   .. ...   .............. ....|..++.+|.+.|
T Consensus        10 ~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~l~~~Dsa~Y   88 (112)
T d1lgva1          10 VSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNS-ASLTISGLQAEDEADY   88 (112)
T ss_dssp             EEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTE-EEEEECSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCE-eeEEeCcCccccCEEE
Confidence            3577899999999876432   345889973  2211   11 000   01111111222222 3345688899999999


Q ss_pred             EEEeEeC
Q psy8666          69 WCLARNS   75 (124)
Q Consensus        69 ~C~~~~~   75 (124)
                      .|.+...
T Consensus        89 yCa~~~~   95 (112)
T d1lgva1          89 YCSSYDG   95 (112)
T ss_dssp             EEEEECS
T ss_pred             EEeeecC
Confidence            9977643

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=0.00022  Score=37.78  Aligned_cols=74  Identities=11%  Similarity=0.251  Sum_probs=42.6

Q ss_pred             EEecCCCEEEEEeeec--cCCCeEEEEeC--CEE---eec-cCCCCC------ceEEEc-cCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEG--KPEPTIEWYKD--GEL---VET-SKSDAK------SQRVIL-PTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~--~p~p~v~w~k~--g~~---~~~-~~~~~~------~~~~~~-~~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|++++|.|...+  .....+.|||.  +..   +.. ......      .+.... ......+...|.+++.+|.|
T Consensus        10 ~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg   89 (113)
T d1smoa_          10 ELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSG   89 (113)
T ss_dssp             ECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCc
Confidence            4568999999998753  24456889973  221   111 000000      111111 12223344567888999999


Q ss_pred             EEEEEeEeC
Q psy8666          67 VYWCLARNS   75 (124)
Q Consensus        67 ~y~C~~~~~   75 (124)
                      .|.|.+...
T Consensus        90 ~Y~Cav~~~   98 (113)
T d1smoa_          90 LYQCVIYQP   98 (113)
T ss_dssp             EEEEEECCT
T ss_pred             eEEEEEECC
Confidence            999976543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.84  E-value=5.3e-05  Score=40.19  Aligned_cols=73  Identities=19%  Similarity=0.360  Sum_probs=43.1

Q ss_pred             CEEecCCCEEEEEeeecc--CCCeEEEEeC--CEE---eecc----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGK--PEPTIEWYKD--GEL---VETS----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~--p~p~v~w~k~--g~~---~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      +.+.+|+.++|.|...+.  ....+.||+.  +..   +...    ............+... ....|.+++.+|.+.|.
T Consensus        10 ~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1          10 VSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTS-ATLGITGLQTGDEADYY   88 (111)
T ss_dssp             EEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTE-EEEEESSCCGGGCSEEE
T ss_pred             eEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCE-eeeEEeeeccccCcceE
Confidence            357889999999987543  2345899973  221   1110    0011112222222333 34567889999999999


Q ss_pred             EEeEe
Q psy8666          70 CLARN   74 (124)
Q Consensus        70 C~~~~   74 (124)
                      |.+..
T Consensus        89 CA~~~   93 (111)
T d1rzfl1          89 CGTWD   93 (111)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            97654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=6.9e-05  Score=39.17  Aligned_cols=76  Identities=24%  Similarity=0.319  Sum_probs=43.9

Q ss_pred             CEEecCCCEEEEEeeeccC----CCeEEEEeCCEEeeccCCC---C----CceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKP----EPTIEWYKDGELVETSKSD---A----KSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p----~p~v~w~k~g~~~~~~~~~---~----~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      |+...|+.+.|.|......    .-.+.|.+++..+......   .    .........+..  ...|.+++.+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~--sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL--SIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTT--EEEECSCCGGGCEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcE--EEEECcCChHHCeEEE
Confidence            4567899999999865322    1346787777554211000   0    011111222221  2346778999999999


Q ss_pred             EEeEeCCcc
Q psy8666          70 CLARNSVGT   78 (124)
Q Consensus        70 C~~~~~~~~   78 (124)
                      |.+.+..+.
T Consensus        82 C~V~~~~~~   90 (105)
T d1dr9a1          82 CVVLKYEKD   90 (105)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEeCCCC
Confidence            998875443

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.0001  Score=37.96  Aligned_cols=70  Identities=17%  Similarity=0.270  Sum_probs=42.5

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .++..+|.|.+.+. |.. .+.|++||..+...... .........+....... ..+...+...|.|.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~-~~~~~~~~~~t~~~~s~-l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFE-PKDVLPNGDGTYQGWIT-LAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSC-CCEEEECTTSCEEEEEE-EEECTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCccc-ccceEeCCCceEEEEEE-EEECCCCCCEEEEEEEeCC
Confidence            46678999999985 644 68999999987643211 12222233333333322 2224556678999998863

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.81  E-value=0.00012  Score=38.98  Aligned_cols=75  Identities=19%  Similarity=0.335  Sum_probs=43.3

Q ss_pred             CEEecCCCEEEEEeeec-cCCCeEEEEeC--CEEee----ccCCCC----CceEE--EccCCcEEEEEEEcCCCccCCeE
Q psy8666           1 MVVAKNEPVTLNCKAEG-KPEPTIEWYKD--GELVE----TSKSDA----KSQRV--ILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~-~p~p~v~w~k~--g~~~~----~~~~~~----~~~~~--~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      +.+.+|+.++|.|.... .....+.|||.  |..+.    ......    .....  ...... .....|.+++.+|.|.
T Consensus         9 v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~Dsa~   87 (115)
T d1fo0a_           9 ISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKS-SIGLIITATQIEDSAV   87 (115)
T ss_dssp             EEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGT-EEEEEECSCCGGGCEE
T ss_pred             EEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCC-EEEEEECCCCcccccc
Confidence            35789999999998653 34456889983  22211    000000    01111  111222 2345578889999999


Q ss_pred             EEEEeEeCC
Q psy8666          68 YWCLARNSV   76 (124)
Q Consensus        68 y~C~~~~~~   76 (124)
                      |.|.+....
T Consensus        88 YyCa~~~~~   96 (115)
T d1fo0a_          88 YFCAMRGDY   96 (115)
T ss_dssp             EEEEEECCC
T ss_pred             ccceeecCC
Confidence            999876543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.81  E-value=0.00014  Score=38.07  Aligned_cols=70  Identities=19%  Similarity=0.335  Sum_probs=40.1

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEe--ecc-----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV--ETS-----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.++|.|.... ....+.||+.  +..+  ...     ............... .....|.+++.+|.+.|.|..
T Consensus        11 ~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~L~I~~~~~~Dsa~YyCa~   88 (104)
T d1yqvl1          11 SASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGT-SYSLTISSMETEDAATYYCQQ   88 (104)
T ss_dssp             EECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCC-EEEEEecccCcccCCeEEEEe
Confidence            5678999999998643 3445789973  2211  100     000111111112222 234556888999999999965


Q ss_pred             E
Q psy8666          73 R   73 (124)
Q Consensus        73 ~   73 (124)
                      .
T Consensus        89 ~   89 (104)
T d1yqvl1          89 W   89 (104)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.80  E-value=0.00039  Score=36.60  Aligned_cols=73  Identities=19%  Similarity=0.345  Sum_probs=39.9

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeC--CEEe--ec--cCCCC---CceEEE--ccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV--ET--SKSDA---KSQRVI--LPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~--~~--~~~~~---~~~~~~--~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      +.+.+|+.+.|.|.........+.|||.  |+.+  ..  .....   ...+..  ..... .....|.+++.+|.+.|.
T Consensus        10 ~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~-~~~L~i~~~~~~Dsa~Yy   88 (110)
T d1ac6a_          10 VALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEAT-SFHLQKASVQESDSAVYY   88 (110)
T ss_dssp             EEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTT-BCCEEEEEECGGGCEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCC-EEeeeecCcCcCCCcccc
Confidence            3578899999999876555567899973  3211  11  00000   011111  11111 111223444899999999


Q ss_pred             EEeEe
Q psy8666          70 CLARN   74 (124)
Q Consensus        70 C~~~~   74 (124)
                      |.+..
T Consensus        89 CA~~~   93 (110)
T d1ac6a_          89 CALSG   93 (110)
T ss_dssp             EEEEE
T ss_pred             eeecC
Confidence            97654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.77  E-value=7.3e-05  Score=39.51  Aligned_cols=72  Identities=17%  Similarity=0.382  Sum_probs=42.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee--c--cC-C--CCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE--T--SK-S--DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~--~--~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|++++|.|.........+.||+.  |..+.  .  .. .  ....++........ ....|..++.+|.+.|.|.+
T Consensus        10 ~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~-~~L~I~~l~~~Dsa~YyCA~   88 (108)
T d1nfde1          10 SVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTT-ATLTISGAQPEDEAAYYCLS   88 (108)
T ss_dssp             EEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTE-EEEEETTCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCE-eeeeEcCccccCCceEEEEe
Confidence            577899999999875444456899973  33221  1  10 0  11111222222222 23457888999999999976


Q ss_pred             Ee
Q psy8666          73 RN   74 (124)
Q Consensus        73 ~~   74 (124)
                      ..
T Consensus        89 ~~   90 (108)
T d1nfde1          89 SY   90 (108)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=0.00029  Score=37.28  Aligned_cols=72  Identities=15%  Similarity=0.283  Sum_probs=40.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee---c-cCCC------CCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE---T-SKSD------AKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~---~-~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+++.|.|... .....+.|||.  |..+.   . ....      ..................|..++.+|.|.|.
T Consensus        11 ~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   89 (113)
T d1j8he1          11 VKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMYL   89 (113)
T ss_dssp             EEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEEE
T ss_pred             EECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccEE
Confidence            567899999999753 24567889973  32211   0 0000      0111111111111233456788999999999


Q ss_pred             EEeEe
Q psy8666          70 CLARN   74 (124)
Q Consensus        70 C~~~~   74 (124)
                      |.+..
T Consensus        90 Ca~~~   94 (113)
T d1j8he1          90 CASSS   94 (113)
T ss_dssp             EEEEC
T ss_pred             eeEcc
Confidence            98764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=7.4e-05  Score=38.93  Aligned_cols=69  Identities=20%  Similarity=0.326  Sum_probs=42.9

Q ss_pred             ecCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           4 AKNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ..|+...|.|.+.|. |.. .++|.++|..+.....   .......+++..+... ..+...+.+.|.|.+....
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~---~~~~~~~dgty~~~s~-l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH---SDLSFSKDWSFYLLYY-TEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEE---CCCEECTTSCEEEEEE-EEECCCSSCCEEEEEECTT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccc---cceecCCCCcEEEEEE-eEECCCCCCEEEEEEEeCC
Confidence            457888999999987 443 5899999987753211   1122233444333322 2225566789999988754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=0.00028  Score=37.00  Aligned_cols=21  Identities=24%  Similarity=0.559  Sum_probs=17.1

Q ss_pred             EEcCCCccCCeEEEEEeEeCC
Q psy8666          56 VVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus        56 ~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .|.+++.+|.|.|.|.+....
T Consensus        72 ~I~~v~~~D~G~Y~C~V~~~~   92 (110)
T d1ncna_          72 RLHNLQIKDKGLYQCIIHHKK   92 (110)
T ss_dssp             EECSCCGGGCEEEEEEEEEEC
T ss_pred             EECCCChhHCEEEEEEEEecC
Confidence            467889999999999986543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.75  E-value=0.00055  Score=36.67  Aligned_cols=73  Identities=23%  Similarity=0.438  Sum_probs=42.9

Q ss_pred             CEEecCCCEEEEEeeeccC--CCeEEEEeC--CEEee--c--c-C--CCCCceE--EEccCCcEEEEEEEcCCCccCCeE
Q psy8666           1 MVVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVE--T--S-K--SDAKSQR--VILPTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~--~--~-~--~~~~~~~--~~~~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      +.+.+|++++|.|...+..  ...+.|||.  |+.+.  .  . .  .....+.  ....... .....|..++.+|.|.
T Consensus        11 v~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~-~~~L~i~~~~~~Dsa~   89 (120)
T d1hxma1          11 VPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKN-LAVLKILAPSERDEGS   89 (120)
T ss_dssp             EEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGT-EEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeecccccc-ceecccccccccCCce
Confidence            3578999999999987543  356899973  32111  0  0 0  0001111  1111222 3445668889999999


Q ss_pred             EEEEeEe
Q psy8666          68 YWCLARN   74 (124)
Q Consensus        68 y~C~~~~   74 (124)
                      |.|....
T Consensus        90 YyCA~~~   96 (120)
T d1hxma1          90 YYCACDT   96 (120)
T ss_dssp             EEEEEEC
T ss_pred             eecCccc
Confidence            9997554

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=0.00019  Score=37.16  Aligned_cols=68  Identities=19%  Similarity=0.306  Sum_probs=41.8

Q ss_pred             cCCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .|+...|.|.+.|. |. -.++|+++|..+....   ........+++...... ..+...+.+.|.|.+....
T Consensus        17 ~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~---~~~~~~~~dgtf~~~s~-l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          17 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVE---MSDMSFSKDWSFYILAH-TEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCE---EEEEEECTTCCEEEEEE-EEECCCSSCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcE---ECceeECCCCCEEEEEE-eEecCcCCCEEEEEEEeCC
Confidence            57778999999886 43 3689999998765321   11122233444333322 2235566778999988754

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.71  E-value=0.0004  Score=36.77  Aligned_cols=87  Identities=15%  Similarity=0.250  Sum_probs=46.7

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEe--ecc--CCCC------CceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV--ETS--KSDA------KSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~--~~~--~~~~------~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.++|.|... .....+.||+.  |..+  ...  ....      .............+...|..++.+|.+.|.
T Consensus        10 ~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~Yy   88 (114)
T d1ogae1          10 FRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYL   88 (114)
T ss_dssp             EEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEE
T ss_pred             EEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeEE
Confidence            578899999999875 34567899973  3211  110  0000      011111111111223456778999999999


Q ss_pred             EEeEeCCcc--ceeeeEEEEEE
Q psy8666          70 CLARNSVGT--AVSRNATLQVA   89 (124)
Q Consensus        70 C~~~~~~~~--~~~~~~~l~v~   89 (124)
                      |......+.  .......|.|.
T Consensus        89 Ca~~~~~~~~~~FG~GT~LtV~  110 (114)
T d1ogae1          89 CASSSRSSYEQYFGPGTRLTVT  110 (114)
T ss_dssp             EEEESSTTSCCEECCCEEEEEE
T ss_pred             EeeccCCCCccEECCCEEEEEC
Confidence            976543221  12334555554

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.71  E-value=0.00068  Score=36.47  Aligned_cols=73  Identities=18%  Similarity=0.372  Sum_probs=42.3

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEee--c--c---C--C---CCCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVE--T--S---K--S---DAKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~--~--~---~--~---~~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      ...+|+++.|.|.+.+..  ...+.|||.  |+.+.  .  .   .  .   ....++... ..........|.+++.+|
T Consensus        12 t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~D   91 (123)
T d1hxmb1          12 TKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQD   91 (123)
T ss_dssp             EEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccccc
Confidence            456799999999987653  346899973  32111  0  0   0  0   001122222 112223344567889999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|-...
T Consensus        92 sa~YyCA~~~  101 (123)
T d1hxmb1          92 IATYYCALWE  101 (123)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEeeeC
Confidence            9999997654

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00014  Score=38.86  Aligned_cols=72  Identities=10%  Similarity=0.225  Sum_probs=40.5

Q ss_pred             EEecCCCEEEEEeeeccCCC---eEEEEeC--CEEe--e----ccCCCCC--ceE--EEccCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP---TIEWYKD--GELV--E----TSKSDAK--SQR--VILPTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p---~v~w~k~--g~~~--~----~~~~~~~--~~~--~~~~~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|+.+.|.|.......+   .+.|||.  ++.+  .    .......  ...  ....... .....|.+++.+|.|
T Consensus        10 ~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~l~~~Dsa   88 (118)
T d1i8lc_          10 LASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGN-QVNLTIQGLRAMDTG   88 (118)
T ss_dssp             ECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSS-EEEEEECSCCGGGCE
T ss_pred             EEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCC-EEEEEeeccccCCCE
Confidence            45678999999997543333   4889973  3211  1    0100000  000  0111222 344556888999999


Q ss_pred             EEEEEeEe
Q psy8666          67 VYWCLARN   74 (124)
Q Consensus        67 ~y~C~~~~   74 (124)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (118)
T d1i8lc_          89 LYICKVEL   96 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeEec
Confidence            99997654

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00065  Score=35.05  Aligned_cols=68  Identities=24%  Similarity=0.186  Sum_probs=36.4

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceE-EEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQR-VILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+..|++++|.|... ...-.+.++|+|......     ... .............|..++..|.|.|+|.....
T Consensus        14 ~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~-----~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          14 VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQ-----CLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             EEETTCCEEEEEECS-SCCSEEEEEEC------C-----EEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcE-----eeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            467899999999763 234456677887643311     000 00111222223345677899999999976543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.64  E-value=0.00029  Score=37.40  Aligned_cols=72  Identities=22%  Similarity=0.415  Sum_probs=40.4

Q ss_pred             EEecCCCEEEEEeeecc------CCCeEEEEeC--CEEee--c-c----CCCCCceEEEccCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGK------PEPTIEWYKD--GELVE--T-S----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~------p~p~v~w~k~--g~~~~--~-~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|+.+.|.|...+.      ....+.|||.  |..+.  . .    ............... .....|..++.+|.|
T Consensus        12 ~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~-~~~L~I~~l~~~Dsa   90 (113)
T d1q9ra1          12 AVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGT-DFTLTITSVQAEDLA   90 (113)
T ss_dssp             EEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT-EEEEEESSCCGGGCE
T ss_pred             EECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCC-eEeEEecccccCCCe
Confidence            57889999999986531      1234889973  32111  0 0    000011111111222 234567888999999


Q ss_pred             EEEEEeEe
Q psy8666          67 VYWCLARN   74 (124)
Q Consensus        67 ~y~C~~~~   74 (124)
                      .|.|-+..
T Consensus        91 ~YyCA~~~   98 (113)
T d1q9ra1          91 VYYCKQSY   98 (113)
T ss_dssp             EEEEEECS
T ss_pred             EEEecccC
Confidence            99997543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=3.5e-05  Score=41.49  Aligned_cols=85  Identities=20%  Similarity=0.399  Sum_probs=46.9

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEE---eecc----CCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GEL---VETS----KSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~---~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .+.+|+.++|.|.........+.|||.  +..   +...    .......+....... .....|.+++.+|.+.|.|..
T Consensus        12 ~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~-~~~L~I~~~~~~DsavYyCa~   90 (119)
T d1f3rb2          12 SASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGT-DYTLTISSLQPEDVATYFCYQ   90 (119)
T ss_dssp             CCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBT-EEEEEECSCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCC-EEEEEcccCccCCCeEEEeec
Confidence            356899999999876555567899973  221   1111    000111111111122 234556888999999999976


Q ss_pred             EeCCccceeeeEEEEE
Q psy8666          73 RNSVGTAVSRNATLQV   88 (124)
Q Consensus        73 ~~~~~~~~~~~~~l~v   88 (124)
                      ... +..+...+.|.|
T Consensus        91 ~~~-~~~FG~GT~LtV  105 (119)
T d1f3rb2          91 YNN-GYTFGAGTKLEL  105 (119)
T ss_dssp             ESS-SEEECCCCEECC
T ss_pred             cCC-CCeECCCeEEEE
Confidence            542 222233445555

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.8e-05  Score=41.02  Aligned_cols=79  Identities=18%  Similarity=0.329  Sum_probs=44.6

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC--ccc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV--GTA   79 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~--~~~   79 (124)
                      .+..|++++|.|... .+.-.+.++|+|.......... ..  .......    .|..++..|.|.|.|......  .+.
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~-~~--~~~~a~F----~i~~v~~~~~G~Y~C~y~~~~~~~S~   85 (96)
T d1ugna1          14 VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIP-QE--LVKKGQF----PIPSITWEHTGRYRCYYGSDTAGRSE   85 (96)
T ss_dssp             EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSC-HH--HHTTTEE----EESSCCGGGCEEEEEEEEETTTEECC
T ss_pred             ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEcc-CC--CCCEEEE----EEEecCHHHCCeEEEEEeCCCCCccc
Confidence            467899999999863 3445577788875322100000 00  0011122    356679999999999865431  233


Q ss_pred             eeeeEEEEE
Q psy8666          80 VSRNATLQV   88 (124)
Q Consensus        80 ~~~~~~l~v   88 (124)
                      .+..+.|.|
T Consensus        86 ~Sd~leL~V   94 (96)
T d1ugna1          86 SSDPLELVV   94 (96)
T ss_dssp             CCCCEEEEE
T ss_pred             cCCCEEEEE
Confidence            355555554

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.59  E-value=0.00014  Score=38.64  Aligned_cols=72  Identities=15%  Similarity=0.270  Sum_probs=40.2

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee-----ccCC-----CCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE-----TSKS-----DAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.+.|.|.... ....+.|||.  |+.+.     ....     .....+.............|..++.+|.+.|.
T Consensus        12 ~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   90 (113)
T d1nfdb1          12 IKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYF   90 (113)
T ss_dssp             EEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEEC
T ss_pred             EEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCceeEE
Confidence            5778999999998643 3457899984  22111     0000     00011111111111233456888999999999


Q ss_pred             EEeEe
Q psy8666          70 CLARN   74 (124)
Q Consensus        70 C~~~~   74 (124)
                      |.+..
T Consensus        91 Ca~~~   95 (113)
T d1nfdb1          91 CASSL   95 (113)
T ss_dssp             EEEES
T ss_pred             EEeec
Confidence            97654

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00012  Score=39.22  Aligned_cols=75  Identities=12%  Similarity=0.202  Sum_probs=40.5

Q ss_pred             CEEecCCCEEEEEeeecc----C---CCeEEEEeCCEEeec-------cC-C----CCCceEEEccC-CcEEEEEEEcCC
Q psy8666           1 MVVAKNEPVTLNCKAEGK----P---EPTIEWYKDGELVET-------SK-S----DAKSQRVILPT-GSLFFLRVVHGK   60 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~----p---~p~v~w~k~g~~~~~-------~~-~----~~~~~~~~~~~-~~~~~~~~i~~~   60 (124)
                      |++.+|+.+.|.|.....    .   ...+.|++....-..       .. .    ....+..+..+ ........|.++
T Consensus        11 vtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   90 (121)
T d2g5ra1          11 VTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDA   90 (121)
T ss_dssp             EEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             EEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCC
Confidence            467899999999987421    1   124679875432110       00 0    00112222211 111122346788


Q ss_pred             CccCCeEEEEEeEeC
Q psy8666          61 KEQDGGVYWCLARNS   75 (124)
Q Consensus        61 ~~~d~g~y~C~~~~~   75 (124)
                      +.+|.|.|.|.+...
T Consensus        91 ~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          91 RMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChHHCEEEEEEEEeC
Confidence            999999999988653

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.56  E-value=0.00022  Score=37.16  Aligned_cols=69  Identities=16%  Similarity=0.173  Sum_probs=40.6

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .|+...|.|.+.+. |.. .+.|+++|..+.....  ........+++..+... ..+...+...|.|.+....
T Consensus        18 ~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~--~~~~~~~~dgty~~~S~-L~v~~~~~~~ytC~V~H~s   88 (101)
T d1fnga1          18 LGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVS--ETVFLPRDDHLFRKFHY-LTFLPSTDDFYDCEVDHWG   88 (101)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEE--ECCCEECSSSCEEEEEE-EEECCCTTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcE--eCeEEECCCCcEEEEEE-eEEcCCCCCEEEEEEEECC
Confidence            46778899999886 543 6899999987753210  01111223333333322 1224455668999998754

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.56  E-value=0.00012  Score=38.10  Aligned_cols=70  Identities=19%  Similarity=0.232  Sum_probs=41.3

Q ss_pred             ecCCCEEEEEeeecc-C-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           4 AKNEPVTLNCKAEGK-P-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ..|+..+|.|.+.+. | .-.+.|+++|..+.....  ........++....... ..+...+.+.|.|.+....
T Consensus        15 ~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~--~t~~~~~~dgtf~~~s~-l~v~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          15 LLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVY--ETSFFVNRDYSFHKLSY-LTFIPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEE--ECCCEECTTSCEEEEEE-EEECCCTTCCEEEEEECTT
T ss_pred             ccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCce--eeeeEECCCCCEEEEEE-eEEcCCCCCEEEEEEEECC
Confidence            357788999999987 3 346899999977652100  01111223333332222 2224566778999998754

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.54  E-value=0.00032  Score=36.29  Aligned_cols=69  Identities=29%  Similarity=0.390  Sum_probs=41.0

Q ss_pred             cCCCEEEEEeeecc-C-CCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-P-EPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p-~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .++.+.|.|.+.+. | .-.++|+++|..+.....  ........++...+...+ .+...+...|.|.+....
T Consensus        16 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~--~~~~~~~~dgty~~~s~L-~v~~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          16 TREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSA--HKTAQPNGDWTYQTLSHL-ALTPSYGDTYTCVVEHIG   86 (98)
T ss_dssp             SSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCS--BCCCEECSSSCEEEEEEE-EECCCTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeE--eCceEECCCCCEEEEEEe-EcCCCCCCEEEEEEEeCC
Confidence            46678899999986 4 346899999987753211  111122233333322221 224556678999998854

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00073  Score=34.52  Aligned_cols=68  Identities=24%  Similarity=0.341  Sum_probs=41.3

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .|+.+.|.|.+.|. |.. .+.|.++|..+...   .........++....... ..+...+...|.|.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~---~~~~~~~~~~~t~~~~s~-l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPE---LRGDVLHNGNGTYQSWVV-VAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCS---EEEEEEETTTTEEEEEEE-EEECTTCCSCEEEEEEETT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCc---EEeeeecCCCCeEEEEEE-eEeCCCCCCEEEEEEEECC
Confidence            46789999999986 543 58999999876521   011111222333333322 2335566778999998864

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.52  E-value=0.00042  Score=36.59  Aligned_cols=71  Identities=15%  Similarity=0.340  Sum_probs=40.3

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEee------ccC----CCCCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE------TSK----SDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~------~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|++++|.|.... ....+.||+.  |+.+.      ...    ....................|..+..+|.+.|.
T Consensus        10 ~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYy   88 (112)
T d2bnub1          10 VLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYF   88 (112)
T ss_dssp             EEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEE
T ss_pred             EECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEEE
Confidence            4778999999998643 4567899973  32211      000    000011111111111223456778999999999


Q ss_pred             EEeE
Q psy8666          70 CLAR   73 (124)
Q Consensus        70 C~~~   73 (124)
                      |...
T Consensus        89 CA~~   92 (112)
T d2bnub1          89 CASS   92 (112)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            9764

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.001  Score=32.64  Aligned_cols=57  Identities=16%  Similarity=0.261  Sum_probs=36.4

Q ss_pred             ecCCCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666           4 AKNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR   73 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~   73 (124)
                      ..|..+.|.|.....+.+  -..|.|+|..+....           .....+...+.  ...+.|+|.|.-.
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~-----------~~~~~tey~V~--~~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-----------LPGQKTEFKVD--SDDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTT-----------CCCSEEEEEEC--GGGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccC-----------CCCCceEEEEe--cCCCCceEEEEEc
Confidence            457788999998765443  467999999988531           11111222222  3567899999854

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.47  E-value=0.00061  Score=36.49  Aligned_cols=73  Identities=18%  Similarity=0.374  Sum_probs=41.7

Q ss_pred             EEecCCCEEEEEeeeccCC----CeEEEEeC--CEEee--cc----CC---C--CCceEEEc-cCCcEEEEEEEcCCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE----PTIEWYKD--GELVE--TS----KS---D--AKSQRVIL-PTGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~----p~v~w~k~--g~~~~--~~----~~---~--~~~~~~~~-~~~~~~~~~~i~~~~~~   63 (124)
                      .+++|+.+.|.|.+.|...    ..+.|+|.  |+.+.  ..    ..   .  ...+.... ......+...|.+++.+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            3578999999999876532    35789973  32211  00    00   0  01122221 12222344556788999


Q ss_pred             CCeEEEEEeEe
Q psy8666          64 DGGVYWCLARN   74 (124)
Q Consensus        64 d~g~y~C~~~~   74 (124)
                      |.+.|.|....
T Consensus        91 DsAvYyCAr~~  101 (120)
T d2agjh1          91 DTATYYCARTS  101 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEeeEecC
Confidence            99999996443

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.46  E-value=0.00018  Score=38.05  Aligned_cols=73  Identities=15%  Similarity=0.356  Sum_probs=40.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC--CEEe---e-ccCCC------CCceEEEccCCcEEEEEEEcCCCccCCeEEE
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD--GELV---E-TSKSD------AKSQRVILPTGSLFFLRVVHGKKEQDGGVYW   69 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~---~-~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~   69 (124)
                      .+.+|+.++|.|.... ....+.||+.  |..+   . .....      ..................|..++.+|.+.|.
T Consensus         9 ~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   87 (112)
T d2cdeb1           9 VIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYL   87 (112)
T ss_dssp             EEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEE
T ss_pred             EECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccEE
Confidence            5678999999998643 3467899983  2211   1 00000      0011111111111223456777999999999


Q ss_pred             EEeEeC
Q psy8666          70 CLARNS   75 (124)
Q Consensus        70 C~~~~~   75 (124)
                      |.+...
T Consensus        88 CA~~~~   93 (112)
T d2cdeb1          88 CASSEN   93 (112)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            976543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.42  E-value=0.00086  Score=35.34  Aligned_cols=27  Identities=26%  Similarity=0.704  Sum_probs=21.5

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWYKD   28 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~k~   28 (124)
                      .+.+|+.+.|.|.........+.|||.
T Consensus        12 ~~~~G~~vtL~C~~~~~~~~~~~WYrQ   38 (112)
T d1fo0b_          12 LVPRGQAVNLRCILKNSQYPWMSWYQQ   38 (112)
T ss_dssp             ECCTTCCEEEEEEESCTTCCEEEEEEE
T ss_pred             EECCCCCEEEEEEEecCCCCcEEEEeE
Confidence            467899999999876555667899984

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.42  E-value=0.002  Score=34.44  Aligned_cols=73  Identities=15%  Similarity=0.306  Sum_probs=41.8

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEE---ee-c-cCCC------CCceEEEcc-CCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GEL---VE-T-SKSD------AKSQRVILP-TGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~---~~-~-~~~~------~~~~~~~~~-~~~~~~~~~i~~~~~~d~   65 (124)
                      ...+|+.+.|.|...+..  ...+.|||.  |+.   +. . ....      ...+..... .........|.+++.+|.
T Consensus        12 ~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Ds   91 (120)
T d1ypzf1          12 SRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDE   91 (120)
T ss_dssp             EEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGC
T ss_pred             EecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccc
Confidence            456899999999876532  456899983  221   11 0 0000      011222221 222233456788899999


Q ss_pred             eEEEEEeEe
Q psy8666          66 GVYWCLARN   74 (124)
Q Consensus        66 g~y~C~~~~   74 (124)
                      +.|.|....
T Consensus        92 a~YyCA~~~  100 (120)
T d1ypzf1          92 AIYYCSYGE  100 (120)
T ss_dssp             SEEEEEECC
T ss_pred             eeEEEEEcC
Confidence            999996543

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.40  E-value=0.00044  Score=35.81  Aligned_cols=70  Identities=20%  Similarity=0.302  Sum_probs=41.0

Q ss_pred             ecCCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           4 AKNEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ..|+...|.|.+.+. |. -.++|.++|..+.....  ........++...+... ..+...+...|.|.+....
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~--~~~~~~~~dgtf~~~s~-l~v~~~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVS--ETSFLSKSDHSFFKISY-LTFLPSADEIYDCKVEHWG   88 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEE--ECCCEECTTSCEEEEEE-EEECCCTTCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcE--ecceEECCCCCEEEEEE-EEEcCCCCCEEEEEEEeCC
Confidence            356778899999987 43 35899999987753210  01111222333332222 1224556678999998753

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.39  E-value=0.00044  Score=35.20  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=39.5

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      +..+.|.|.+.|. |.. .++|.++|..+...    ........++...+...+ .+...+...|.|.+....
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~----~~~~~~~~dgty~~~S~l-~v~~~~~~~ytC~V~H~s   82 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSG----NCSTGPNGDGSFHAWSLL-EVKRGDEHHYQCQVEHEG   82 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCC----EEEEEECSSSCEEEEEEE-EEETTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCcc----CccceecCCCCEeEEEEE-EECCCCCCEEEEEEEeCC
Confidence            4468899999986 544 58999999876421    111122233443333221 224456678999988754

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.39  E-value=0.0014  Score=34.12  Aligned_cols=69  Identities=16%  Similarity=0.231  Sum_probs=42.0

Q ss_pred             ecCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           4 AKNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ..|+..+|.|.+.+. |.. .+.|.++|..+...   .........++...+...+ .+...+...|.|.+....
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~---~~~~~~~~~dgty~~~S~L-~v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGF---GPTFVSAVDGLSFQAFSYL-NFTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSC---CCEEEEEETTTEEEEEEEE-EECCCTTCCEEEEEEETT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCc---EeceEEeCCCCcEEEEEEE-EEecCCCCEEEEEEEeCC
Confidence            457788999999986 433 57999999875432   1122222334443333221 224556677999999863

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.30  E-value=0.00036  Score=35.93  Aligned_cols=68  Identities=12%  Similarity=0.235  Sum_probs=40.5

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCc
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVG   77 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~   77 (124)
                      ++.+.|.|.+.+. |.. .++|++++.......   ........++....... ..+..++...|.|.+....-
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~---~~~~~~~~dgty~~~S~-L~v~~~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQ---LGDILPNANWTWYLRAT-LDVADGEAAGLSCRVKHSSL   85 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCE---ECCCEECTTSCEEEEEE-EEEEGGGCTTEEEEEEEGGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCCCce---eCccEeCCCCcEEEEEE-EEEeCccCCEEEEEEEeCCC
Confidence            4568999999886 655 689999988654321   11112233344332222 22245667789999888653

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.30  E-value=0.00044  Score=35.71  Aligned_cols=68  Identities=18%  Similarity=0.358  Sum_probs=39.1

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ++...|.|.+.+. |.. .++|+++|..+.....  ........++.......+ .+...+...|.|.+....
T Consensus        18 ~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~--~~~~~~~~dgtf~~~s~l-~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          18 QHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVV--STGLIQNGDWTFQTLVML-ETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEETTEECCSSEE--ECCCEECSSSCEEEEEEE-ECCCCTTCEEEEEEECTT
T ss_pred             CCceEEEEEEeeeECCCcEEEEEECCEEcCCCCE--ECeEEeCCCcEEEEEEEe-eEcCCCCCEEEEEEEECC
Confidence            5556799999886 433 6899999987753210  011112233444333332 235667789999998864

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.29  E-value=0.0029  Score=33.73  Aligned_cols=71  Identities=24%  Similarity=0.389  Sum_probs=42.1

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee------ccC-----CCCCceEEEc-cCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE------TSK-----SDAKSQRVIL-PTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~------~~~-----~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.      ...     .....+..+. ..........|.+++.+|.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            46789999999999887544  4789973  33221      000     0001222222 1222233345678899999


Q ss_pred             eEEEEEe
Q psy8666          66 GVYWCLA   72 (124)
Q Consensus        66 g~y~C~~   72 (124)
                      +.|.|-.
T Consensus        91 A~YYCAr   97 (120)
T d1dn0b1          91 AVYYCAR   97 (120)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            9999953

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.26  E-value=0.0032  Score=33.55  Aligned_cols=74  Identities=19%  Similarity=0.329  Sum_probs=43.6

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEe--eccCC-C------C--CceEEEc-cCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELV--ETSKS-D------A--KSQRVIL-PTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~--~~~~~-~------~--~~~~~~~-~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+  ..... .      .  ..+..+. ......+...|..++.+|.
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence            46889999999999886543  4789984  3222  11000 0      0  0122222 2222334445678899999


Q ss_pred             eEEEEEeEeC
Q psy8666          66 GVYWCLARNS   75 (124)
Q Consensus        66 g~y~C~~~~~   75 (124)
                      +.|.|.....
T Consensus        90 A~YYCAr~~~   99 (119)
T d1kxvc_          90 AMYYCKPSLR   99 (119)
T ss_dssp             EEEEEEEEES
T ss_pred             ceEeeeeccc
Confidence            9999976543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.0013  Score=34.28  Aligned_cols=75  Identities=17%  Similarity=0.164  Sum_probs=39.3

Q ss_pred             CEEecCCCEEEEEeeec---cCC---CeEEEEeCCE----EeeccC------CCCCceEEEccC-CcEEEEEEEcCCCcc
Q psy8666           1 MVVAKNEPVTLNCKAEG---KPE---PTIEWYKDGE----LVETSK------SDAKSQRVILPT-GSLFFLRVVHGKKEQ   63 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~---~p~---p~v~w~k~g~----~~~~~~------~~~~~~~~~~~~-~~~~~~~~i~~~~~~   63 (124)
                      |.+.+|+.+.|.|....   .+.   -.+.|++...    .+....      .....+.....+ ........|.+++.+
T Consensus        10 v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   89 (118)
T d1qfoa_          10 VQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPE   89 (118)
T ss_dssp             EEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             EEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCChh
Confidence            35678999999998752   111   1345776321    111110      001112222211 111122346778999


Q ss_pred             CCeEEEEEeEeC
Q psy8666          64 DGGVYWCLARNS   75 (124)
Q Consensus        64 d~g~y~C~~~~~   75 (124)
                      |.|.|.|.+...
T Consensus        90 DsG~Y~C~v~~~  101 (118)
T d1qfoa_          90 DSGTYNFRFEIS  101 (118)
T ss_dssp             GCEEEEEEEECC
T ss_pred             HCEEEEEEEEeC
Confidence            999999988654

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.19  E-value=0.002  Score=34.81  Aligned_cols=73  Identities=21%  Similarity=0.410  Sum_probs=41.5

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEe--ec----cCC-----------CCCceEEEc-cCCcEEEEEEEcC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELV--ET----SKS-----------DAKSQRVIL-PTGSLFFLRVVHG   59 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~--~~----~~~-----------~~~~~~~~~-~~~~~~~~~~i~~   59 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+  ..    ...           ....+..+. ..........|.+
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~   90 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS   90 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence            3578999999999987643  35789974  2211  10    000           000111111 1122233345678


Q ss_pred             CCccCCeEEEEEeEe
Q psy8666          60 KKEQDGGVYWCLARN   74 (124)
Q Consensus        60 ~~~~d~g~y~C~~~~   74 (124)
                      ++.+|.+.|.|-...
T Consensus        91 l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          91 LKPEDTAVYYCAAKT  105 (127)
T ss_dssp             CCGGGCEEEEEEEES
T ss_pred             ccccceeEEEEEEEe
Confidence            899999999997543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.0038  Score=32.78  Aligned_cols=75  Identities=11%  Similarity=0.250  Sum_probs=44.4

Q ss_pred             EEecCCCEEEEEeeecc--CCCeEEEEeC--CEE---eeccCC-CCC------ceEEEc-cCCcEEEEEEEcCCCccCCe
Q psy8666           2 VVAKNEPVTLNCKAEGK--PEPTIEWYKD--GEL---VETSKS-DAK------SQRVIL-PTGSLFFLRVVHGKKEQDGG   66 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~--p~p~v~w~k~--g~~---~~~~~~-~~~------~~~~~~-~~~~~~~~~~i~~~~~~d~g   66 (124)
                      .+.+|+++++.|...+.  ......|+|.  |+.   +..... ...      .+..+. ......+...|.+++.+|.|
T Consensus         6 ~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa   85 (110)
T d1u9ka_           6 DLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSG   85 (110)
T ss_dssp             EECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             cCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCE
Confidence            57899999999998653  4456789984  331   111100 000      111121 12223344557888999999


Q ss_pred             EEEEEeEeCC
Q psy8666          67 VYWCLARNSV   76 (124)
Q Consensus        67 ~y~C~~~~~~   76 (124)
                      .|.|......
T Consensus        86 ~YyCa~~~~~   95 (110)
T d1u9ka_          86 LYRCVIYHPP   95 (110)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEeCCC
Confidence            9999875443

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.00049  Score=34.86  Aligned_cols=68  Identities=21%  Similarity=0.207  Sum_probs=38.5

Q ss_pred             cCCCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           5 KNEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .++.+.|.|.+.+.-+.  .++|.++|..+.....  ........++.......+ .+...+...|.|.+...
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~--~~~~~~~~~gt~~~~s~l-~v~~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDME--LVETRPAGDGTFQKWASV-VVPLGKEQYYTCHVYHQ   83 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCE--ECCCEECSSSCEEEEEEE-EEESSTTTTCEEEEECS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEE--ECcEecCCCCcEEEEEEE-EecCcCCCEEEEEEEEC
Confidence            35578999999986333  4799999988763211  011122233333222221 12344556799988764

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.16  E-value=0.0041  Score=32.82  Aligned_cols=72  Identities=18%  Similarity=0.373  Sum_probs=42.3

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  ..+.|+|.  |+.+.  ......          ..+..+. .+....+...|.+++.+|
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eD   90 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSED   90 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCc
Confidence            4678999999999988653  35789973  33221  000000          1122221 122333344567889999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        91 tAvYYCA~~   99 (114)
T d1indh1          91 TALYFCASH   99 (114)
T ss_dssp             CEEEEEECG
T ss_pred             ccEEEECCC
Confidence            999999643

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.16  E-value=1.4e-05  Score=41.48  Aligned_cols=76  Identities=16%  Similarity=0.402  Sum_probs=42.3

Q ss_pred             CEEecCCCEEEEEeeeccCCCeEEEEeC--CEEee------ccC-CCCCceEEEc-cCCcEEEEEEEcCCCccCCeEEEE
Q psy8666           1 MVVAKNEPVTLNCKAEGKPEPTIEWYKD--GELVE------TSK-SDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGVYWC   70 (124)
Q Consensus         1 v~~~~G~~~~l~C~~~~~p~p~v~w~k~--g~~~~------~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~y~C   70 (124)
                      +.+.+|++++|.|.... ....+.|||.  |..+.      ... .....+.... ..........|.+++.+|.|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            46789999999998653 3456899983  32211      000 0011111111 001111223467789999999999


Q ss_pred             EeEeCCc
Q psy8666          71 LARNSVG   77 (124)
Q Consensus        71 ~~~~~~~   77 (124)
                      -+....+
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            7665443

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.15  E-value=0.0044  Score=32.99  Aligned_cols=72  Identities=25%  Similarity=0.400  Sum_probs=39.2

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee------cc-C---C--CCCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE------TS-K---S--DAKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~------~~-~---~--~~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+.      .. .   +  ....+..+. ..........|.+++.+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            4678999999999887543  34789973  43221      00 0   0  001122111 111112223344558999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        91 sAvYYCA~~   99 (119)
T d1qnzh_          91 SAVYYCAIH   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            999999543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.11  E-value=0.0046  Score=32.76  Aligned_cols=72  Identities=18%  Similarity=0.327  Sum_probs=41.4

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+.  ......          ..+..+. ..........+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eD   90 (117)
T d1jpth1          11 LVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAED   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCC
Confidence            4678999999999988653  35789873  33221  000000          1111111 111222333457779999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        91 TAvYYCAr~   99 (117)
T d1jpth1          91 TAVYYCARD   99 (117)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999654

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.08  E-value=0.0045  Score=32.91  Aligned_cols=71  Identities=24%  Similarity=0.380  Sum_probs=40.8

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+.  ......          ..+..+. ......+...+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCc
Confidence            4678999999999988654  35789973  33221  000000          0111111 111222334467789999


Q ss_pred             CeEEEEEe
Q psy8666          65 GGVYWCLA   72 (124)
Q Consensus        65 ~g~y~C~~   72 (124)
                      .+.|.|..
T Consensus        91 TAvYYCAr   98 (119)
T d1eapb1          91 SAVYFCKR   98 (119)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEE
Confidence            99999954

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.08  E-value=0.0053  Score=32.73  Aligned_cols=72  Identities=22%  Similarity=0.367  Sum_probs=41.7

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.+...  ..+.|+|.  |+.+.  ......          ..+..+. ..........|..++.+|
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eD   90 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSND   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCc
Confidence            4678999999999887543  35789973  43221  000000          0111111 122223334567789999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        91 tA~YYCAr~   99 (120)
T d1pg7x1          91 SAVYYCARE   99 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeec
Confidence            999999754

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.07  E-value=0.0052  Score=32.51  Aligned_cols=73  Identities=19%  Similarity=0.366  Sum_probs=42.6

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCC-C--------CCceEEEc-cCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKS-D--------AKSQRVIL-PTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~-~--------~~~~~~~~-~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  .... .        ...+..+. .+....+...+.+++.+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT   90 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence            46789999999999886544  4789873  33221  0000 0        01122111 1222233345678899999


Q ss_pred             eEEEEEeEe
Q psy8666          66 GVYWCLARN   74 (124)
Q Consensus        66 g~y~C~~~~   74 (124)
                      +.|.|-...
T Consensus        91 AvYYCAr~~   99 (116)
T d1a2yb_          91 ARYYCARER   99 (116)
T ss_dssp             EEEEEEEES
T ss_pred             eEEEEEEeC
Confidence            999997543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.0006  Score=34.95  Aligned_cols=68  Identities=19%  Similarity=0.213  Sum_probs=38.7

Q ss_pred             CCCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ++.+.|.|.+.+.-+.  .++|.++|..+.....  .........+.......+ .+...+...|.|.+....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~--~~~~~~~~~~~~~~~s~l-~v~~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTE--LVETRPAGDRTFQKWAAV-VVPSGEEQRYTCHVQHEG   84 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCE--ECCCEECSSSCEEEEEEE-EEETTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCce--eccEEcCCCCeEEEEEEE-EEEcCCCCEEEEEEEECc
Confidence            4568999999987443  4799999987653210  011112223333222221 223445567999988753

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.07  E-value=0.0054  Score=32.60  Aligned_cols=73  Identities=21%  Similarity=0.374  Sum_probs=42.3

Q ss_pred             EEecCCCEEEEEeeeccCCC---eEEEEe--CCEEee--ccCCC-C--------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP---TIEWYK--DGELVE--TSKSD-A--------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p---~v~w~k--~g~~~~--~~~~~-~--------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....   .+.|+|  .|+.+.  ..... .        ..+..+. ......+...+.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eD   90 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTED   90 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCC
Confidence            47789999999999987653   367987  343321  00000 0        0111111 122222334467789999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      ...|.|-...
T Consensus        91 TAvYYCAr~~  100 (119)
T d1ncwh1          91 TATYYCAGLL  100 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeEec
Confidence            9999996443

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.05  E-value=0.0061  Score=33.03  Aligned_cols=73  Identities=21%  Similarity=0.368  Sum_probs=41.7

Q ss_pred             EEecCCCEEEEEeeeccCC----CeEEEEeC--CEEe--eccC--CCC-------CceEEEc-cCCcEEEEEEEcCCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE----PTIEWYKD--GELV--ETSK--SDA-------KSQRVIL-PTGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~----p~v~w~k~--g~~~--~~~~--~~~-------~~~~~~~-~~~~~~~~~~i~~~~~~   63 (124)
                      .+++|+.+.|.|.+.|...    ..+.|+|.  |+.+  ....  ...       ..+..+. .+....+...|..++.+
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            4678999999999887542    24789973  3221  1000  000       0111111 12222344556788999


Q ss_pred             CCeEEEEEeEe
Q psy8666          64 DGGVYWCLARN   74 (124)
Q Consensus        64 d~g~y~C~~~~   74 (124)
                      |.+.|.|-...
T Consensus        91 DtAvYYCAr~~  101 (132)
T d1tjgh1          91 DTATYFCAHRR  101 (132)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEEEec
Confidence            99999996443

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.05  E-value=0.00099  Score=34.25  Aligned_cols=69  Identities=14%  Similarity=0.234  Sum_probs=38.1

Q ss_pred             cCCCEEEEEeeeccCC--CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGKPE--PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~--p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      .++...|.|.+.+.-+  -.+.|.++|..+.....  ........++.......+ .+...+...|.|.+....
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~--~~~~~~~~dgty~~~s~l-~v~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVV--STPLIRNGDWTFQILVML-EMTPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEE--ECCCEECSSSCEEEEEEE-ECCSCTTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcE--eceeecCCCceEEEEEEe-ccCCCCCCEEEEEEEeCC
Confidence            3556789999988633  35899999987653210  011112233333333322 235566788999988754

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.04  E-value=0.0058  Score=32.35  Aligned_cols=73  Identities=21%  Similarity=0.395  Sum_probs=42.7

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee------ccCC---C--CCceEEEc-cCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE------TSKS---D--AKSQRVIL-PTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~------~~~~---~--~~~~~~~~-~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.      ....   .  ...+..+. ..........|..++.+|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt   90 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence            46789999999999886543  5789973  33221      0000   0  00111111 1222233445678899999


Q ss_pred             eEEEEEeEe
Q psy8666          66 GVYWCLARN   74 (124)
Q Consensus        66 g~y~C~~~~   74 (124)
                      +.|.|....
T Consensus        91 AvYyCAr~~   99 (116)
T d7fabh1          91 AVYYCARNL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEeeeec
Confidence            999997543

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.03  E-value=0.0053  Score=32.56  Aligned_cols=71  Identities=20%  Similarity=0.341  Sum_probs=40.8

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+.  ......          ..+..+. ..........+.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eD   90 (118)
T d1nlbh1          11 LKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCc
Confidence            4678999999999987653  35789873  33221  100000          1111111 112222334467789999


Q ss_pred             CeEEEEEe
Q psy8666          65 GGVYWCLA   72 (124)
Q Consensus        65 ~g~y~C~~   72 (124)
                      .+.|.|-.
T Consensus        91 tAvYYCAr   98 (118)
T d1nlbh1          91 TATYFCAR   98 (118)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999953

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.0059  Score=32.28  Aligned_cols=71  Identities=24%  Similarity=0.407  Sum_probs=41.2

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEe--CCEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYK--DGELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k--~g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|..  ...+.|++  .|+.+.  ......          ..+..+. ..........|.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eD   90 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFED   90 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCC
Confidence            467899999999988754  34588997  343322  000000          0111111 112222334567889999


Q ss_pred             CeEEEEEe
Q psy8666          65 GGVYWCLA   72 (124)
Q Consensus        65 ~g~y~C~~   72 (124)
                      .+.|.|-.
T Consensus        91 tAvYYCAr   98 (115)
T d1f3dh1          91 SAVYYCAN   98 (115)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEec
Confidence            99999954

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.02  E-value=0.006  Score=32.31  Aligned_cols=72  Identities=22%  Similarity=0.442  Sum_probs=42.5

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCC---------CCCceEEEc-cCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKS---------DAKSQRVIL-PTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~---------~~~~~~~~~-~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|+  |+.+.  ....         ....+..+. ......+...+.+++.+|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            4678999999999988654  35789973  33221  0000         001122221 2222233445678899999


Q ss_pred             eEEEEEeE
Q psy8666          66 GVYWCLAR   73 (124)
Q Consensus        66 g~y~C~~~   73 (124)
                      +.|.|-..
T Consensus        91 AvYYCAr~   98 (117)
T d1c5db1          91 AIYFCTRE   98 (117)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEecc
Confidence            99999644

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.01  E-value=0.0039  Score=33.35  Aligned_cols=73  Identities=19%  Similarity=0.384  Sum_probs=42.1

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee------ccCC----C--CCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE------TSKS----D--AKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~------~~~~----~--~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.      ....    .  ...+..+. ..........+.+++.+|
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eD   90 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSED   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCc
Confidence            46789999999999886533  4789873  33221      0000    0  01112221 112222334467789999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|-...
T Consensus        91 tAvYYCAr~~  100 (123)
T d1mqkh_          91 TAMYYCVRHE  100 (123)
T ss_dssp             CEEEEEEEEE
T ss_pred             ccceeEEecC
Confidence            9999996554

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.00  E-value=0.0063  Score=32.24  Aligned_cols=73  Identities=19%  Similarity=0.335  Sum_probs=42.2

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCC--C--------CCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKS--D--------AKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~--~--------~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  ....  .        ...+..+. ..........|.+++.+|
T Consensus        10 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eD   89 (117)
T d1um5h1          10 LVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSED   89 (117)
T ss_dssp             EECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCc
Confidence            46789999999999886543  5789973  33221  0000  0        01112111 122222334467789999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|....
T Consensus        90 tAvYYCAr~~   99 (117)
T d1um5h1          90 SAVYYCARSS   99 (117)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeecc
Confidence            9999996443

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.99  E-value=0.0028  Score=33.07  Aligned_cols=72  Identities=22%  Similarity=0.442  Sum_probs=39.9

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEee------ccC-----CCCCceEEEc-cCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVE------TSK-----SDAKSQRVIL-PTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~------~~~-----~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+++|+.+.|.|.+.|..  ...+.|+|+  |+.+.      ...     .....+..+. ......+...|.+++.+|.
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            367899999999988753  345789974  32211      000     0001122222 1222233344678899999


Q ss_pred             eEEEEEeE
Q psy8666          66 GVYWCLAR   73 (124)
Q Consensus        66 g~y~C~~~   73 (124)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999643

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.98  E-value=0.0071  Score=32.40  Aligned_cols=72  Identities=21%  Similarity=0.385  Sum_probs=41.2

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  ......          ..+..+. .+........+..++.+|
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD   89 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED   89 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence            35789999999999886543  5789983  33221  000000          0111111 111222333457778999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|...
T Consensus        90 tAvYYCAr~   98 (124)
T d1zvya1          90 TAIYTCGAT   98 (124)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999654

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0022  Score=33.30  Aligned_cols=66  Identities=15%  Similarity=0.268  Sum_probs=37.4

Q ss_pred             CCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCC
Q psy8666           7 EPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSV   76 (124)
Q Consensus         7 ~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~   76 (124)
                      ..+.|.|.+.+. |.. .++|+++|..+....   ........++..... ....+...+   ...|.|.+....
T Consensus        22 ~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~---~~~~~~~~~~~y~~~-S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          22 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDL---STASTTQEGELASTQ-SELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGG---EEEEEEEETTEEEEE-EEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CeEEEEEEEEEEECCCcEEEEEECCEEccCCc---eeeeEeCCCCeEEEE-EEEEECHHHcCCCCEEEEEEEECC
Confidence            457799999885 544 489999998876321   111112223322221 112223433   577999999864

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.96  E-value=0.0066  Score=31.74  Aligned_cols=72  Identities=19%  Similarity=0.449  Sum_probs=42.0

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee------ccCCC--------CCceEEEc-cCCcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE------TSKSD--------AKSQRVIL-PTGSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~------~~~~~--------~~~~~~~~-~~~~~~~~~~i~~~~~   62 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.      .....        ...+..+. ..........+.+++.
T Consensus        11 ~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~   90 (109)
T d2ck0h1          11 LVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKT   90 (109)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCH
Confidence            46889999999999876543  5789873  33221      00000        01122222 1222223344677899


Q ss_pred             cCCeEEEEEeE
Q psy8666          63 QDGGVYWCLAR   73 (124)
Q Consensus        63 ~d~g~y~C~~~   73 (124)
                      +|.+.|.|-..
T Consensus        91 eDTAvYYCAr~  101 (109)
T d2ck0h1          91 EDTGIYYCVRG  101 (109)
T ss_dssp             GGCEEEEEEEE
T ss_pred             hHCEEEEEEEc
Confidence            99999999643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.95  E-value=0.0075  Score=32.34  Aligned_cols=73  Identities=19%  Similarity=0.354  Sum_probs=42.0

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEe--CCEEee--ccCCCC----------CceEEE-ccCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYK--DGELVE--TSKSDA----------KSQRVI-LPTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k--~g~~~~--~~~~~~----------~~~~~~-~~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|  .|+.+.  ......          ..+..+ .......+...+.+++.+|
T Consensus        11 l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eD   90 (125)
T d1rihh1          11 LAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSED   90 (125)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCccc
Confidence            4678999999999987653  3578987  333221  000000          011111 1222223334457789999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|-...
T Consensus        91 tAvYYCAR~~  100 (125)
T d1rihh1          91 SAVYYCARES  100 (125)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEEeeeC
Confidence            9999997543

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.92  E-value=0.0079  Score=32.03  Aligned_cols=73  Identities=22%  Similarity=0.413  Sum_probs=42.2

Q ss_pred             EEecCCCEEEEEeeeccCC--C--eEEEEeC--CEEee--ccCC-CC--------CceEEEc-cCCcEEEEEEEcCCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--P--TIEWYKD--GELVE--TSKS-DA--------KSQRVIL-PTGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p--~v~w~k~--g~~~~--~~~~-~~--------~~~~~~~-~~~~~~~~~~i~~~~~~   63 (124)
                      .+++|+.+.|.|.+.|...  .  .+.|+|.  |+.+.  .... ..        ..+..+. ......+...|..++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            4678999999999987543  2  3679973  33221  0000 00        0111111 12222344456788999


Q ss_pred             CCeEEEEEeEe
Q psy8666          64 DGGVYWCLARN   74 (124)
Q Consensus        64 d~g~y~C~~~~   74 (124)
                      |.+.|.|....
T Consensus        91 DtAvYYCAr~~  101 (120)
T d1ai1h1          91 DTAMYYCSREN  101 (120)
T ss_dssp             GCEEEEEEEEE
T ss_pred             ceeEEEEEecC
Confidence            99999996544

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.91  E-value=0.0072  Score=32.27  Aligned_cols=73  Identities=18%  Similarity=0.322  Sum_probs=41.9

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  ......          ..+..+. .+....+...+.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eD   90 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSED   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccC
Confidence            36789999999999886543  4789973  33221  100000          0111111 111222334456778999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|....
T Consensus        91 TAvYYCAr~~  100 (122)
T d1bz7b1          91 TAIYYCTRGG  100 (122)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeecCC
Confidence            9999997544

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.90  E-value=0.0083  Score=31.98  Aligned_cols=72  Identities=21%  Similarity=0.355  Sum_probs=41.4

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+.  ......          ..+..+. .+........+.+++.+|
T Consensus        12 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eD   91 (122)
T d1vgeh1          12 VKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPED   91 (122)
T ss_dssp             EECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCc
Confidence            4688999999999988654  34789973  33221  000000          1111111 122222333457778999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        92 tA~YYCAr~  100 (122)
T d1vgeh1          92 TAVYYCARD  100 (122)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999654

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.89  E-value=0.0087  Score=32.15  Aligned_cols=72  Identities=18%  Similarity=0.353  Sum_probs=41.9

Q ss_pred             EEecCCCEEEEEeeeccCC---CeEEEEeC--CEEee------ccCC---C--CCceEE-EccCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE---PTIEWYKD--GELVE------TSKS---D--AKSQRV-ILPTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~---p~v~w~k~--g~~~~------~~~~---~--~~~~~~-~~~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...   -.+.|+|+  |+.+.      ....   .  ...+.. ........+...+..++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            4678999999999988654   24789973  44321      0000   0  001111 11122223344467889999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        91 tAvYyCAr~   99 (127)
T d3cx5j1          91 TATYYCARS   99 (127)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeee
Confidence            999999644

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.85  E-value=0.0089  Score=31.69  Aligned_cols=71  Identities=18%  Similarity=0.341  Sum_probs=40.6

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCC--CCC--------ceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKS--DAK--------SQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~--~~~--------~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  ....  ...        .+..+. ..........+.+++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eD   90 (118)
T d2jelh1          11 LVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCc
Confidence            46789999999999886543  5789973  33221  0000  000        111111 112222333457779999


Q ss_pred             CeEEEEEe
Q psy8666          65 GGVYWCLA   72 (124)
Q Consensus        65 ~g~y~C~~   72 (124)
                      .+.|.|-.
T Consensus        91 TAvYYCAr   98 (118)
T d2jelh1          91 SAIYYCAR   98 (118)
T ss_dssp             CEEEEEEE
T ss_pred             ceeeeEEE
Confidence            99999953

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.84  E-value=0.0091  Score=31.52  Aligned_cols=73  Identities=26%  Similarity=0.395  Sum_probs=41.9

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEe--CCEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYK--DGELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k--~g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|  .|+.+.  ......          ..+..+. ..........+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eD   90 (116)
T d1mjuh1          11 LVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDD   90 (116)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCC
Confidence            46789999999999886543  478987  333221  000000          0122111 122222333457778999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|-...
T Consensus        91 tAvYYCAr~~  100 (116)
T d1mjuh1          91 SAVYYCANKL  100 (116)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEcccC
Confidence            9999996543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.83  E-value=0.0093  Score=31.57  Aligned_cols=71  Identities=21%  Similarity=0.359  Sum_probs=40.8

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEe--CCEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYK--DGELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k--~g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  ..+.|+|  .|+.+.  ......          ..+..+. ..........|.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eD   90 (117)
T d1mfah1          11 VARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSED   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCc
Confidence            4678999999999987543  3578987  344221  000000          1111111 122222334467788999


Q ss_pred             CeEEEEEe
Q psy8666          65 GGVYWCLA   72 (124)
Q Consensus        65 ~g~y~C~~   72 (124)
                      .+.|.|-.
T Consensus        91 tAvYYCAr   98 (117)
T d1mfah1          91 SAVYYCTR   98 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEec
Confidence            99999964

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.83  E-value=0.0094  Score=31.53  Aligned_cols=72  Identities=18%  Similarity=0.356  Sum_probs=41.4

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee-------ccC---C--CCCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE-------TSK---S--DAKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~-------~~~---~--~~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.       ...   +  ....+..+. .+........+.+++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eD   90 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSED   90 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCc
Confidence            35789999999999986544  4789973  33221       100   0  001122221 122223334467789999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|...
T Consensus        91 TAvYYCAr~   99 (117)
T d1jnhb1          91 SAVYSCSRG   99 (117)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999643

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.80  E-value=0.01  Score=31.57  Aligned_cols=72  Identities=22%  Similarity=0.413  Sum_probs=42.0

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee------ccCCCC------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE------TSKSDA------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~------~~~~~~------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  ..+.|+|.  |+.+.      ......      ..+..+. ......+...+.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eD   90 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPED   90 (121)
T ss_dssp             EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccc
Confidence            4688999999999987654  34789973  33211      000000      1122222 222233334467778999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|...
T Consensus        91 tAvYYCAr~   99 (121)
T d2p49b1          91 TATYYCAAG   99 (121)
T ss_dssp             CEEEEEEES
T ss_pred             eeEEeeecc
Confidence            999999754

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.80  E-value=0.011  Score=31.76  Aligned_cols=73  Identities=18%  Similarity=0.433  Sum_probs=41.8

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEe------ecc-CC---C--CCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELV------ETS-KS---D--AKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~------~~~-~~---~--~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+      ... ..   .  ...+..+. .+....+...|.+++.+|
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eD   89 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPED   89 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCccc
Confidence            46889999999999876543  4789973  3322      100 00   0  01122221 222333445567889999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|-...
T Consensus        90 TAvYYCAr~~   99 (126)
T d1rjca1          90 TAMYYCAADT   99 (126)
T ss_dssp             CEEEEEEECC
T ss_pred             CceeEEEeec
Confidence            9999997543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.80  E-value=0.0093  Score=31.88  Aligned_cols=72  Identities=19%  Similarity=0.389  Sum_probs=40.4

Q ss_pred             EEecCCCEEEEEeeeccCCC----eEEEEeC--CEEee------ccCCC-----CCceEEEc-cCCcEEEEEEEcCCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP----TIEWYKD--GELVE------TSKSD-----AKSQRVIL-PTGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p----~v~w~k~--g~~~~------~~~~~-----~~~~~~~~-~~~~~~~~~~i~~~~~~   63 (124)
                      .+++|+.+.|.|.+.|....    .+.|+|.  |+.+.      .....     ...+..+. ......+...|..++.+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            46789999999998875422    3679973  33221      10000     01112111 11222233456778999


Q ss_pred             CCeEEEEEeE
Q psy8666          64 DGGVYWCLAR   73 (124)
Q Consensus        64 d~g~y~C~~~   73 (124)
                      |.+.|.|-..
T Consensus        91 DsAvYyCAr~  100 (123)
T d1r0ah1          91 DTAIYYCAQS  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeccc
Confidence            9999999654

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0027  Score=32.79  Aligned_cols=68  Identities=18%  Similarity=0.248  Sum_probs=37.6

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc---cCCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE---QDGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~   76 (124)
                      ++.+.|.|.+.+. |. -.+.|+++|..+......  .......++....... ..+..   .....|.|.+....
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t--~~~~~~~dgtys~~S~-L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMET--TQPSKQSNNKYMASSY-LTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE--CCCEECTTSCEEEEEE-EEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEe--cccEEcCCCCEEEEEE-EEECHHHhCCCCEEEEEEEECC
Confidence            4567899999876 43 368999999876532100  0111122333222211 11133   23678999998754

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.79  E-value=0.011  Score=31.85  Aligned_cols=73  Identities=18%  Similarity=0.314  Sum_probs=42.3

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee-------ccCC---CC--CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE-------TSKS---DA--KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~-------~~~~---~~--~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+.       ....   ..  ..+..+. .+....+...+..++.+|
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (130)
T d1rhhb1          10 VKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDD   89 (130)
T ss_dssp             EECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCC
Confidence            4678999999999988653  34789873  33221       0000   00  0121111 122223334467789999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|....
T Consensus        90 tAvYyCAr~~   99 (130)
T d1rhhb1          90 TAVYYCARDF   99 (130)
T ss_dssp             CEEEEEEEEC
T ss_pred             cEEEEEEeec
Confidence            9999997553

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.79  E-value=0.01  Score=31.44  Aligned_cols=74  Identities=18%  Similarity=0.323  Sum_probs=43.8

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCCC----------CCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKSD----------AKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~~----------~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  .....          ...+..+. .+....+...+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCc
Confidence            46789999999999886544  4789873  33221  00000          01122222 122333444567889999


Q ss_pred             CeEEEEEeEeC
Q psy8666          65 GGVYWCLARNS   75 (124)
Q Consensus        65 ~g~y~C~~~~~   75 (124)
                      .+.|.|.....
T Consensus        91 tAvYYCAr~~~  101 (118)
T d2fbjh1          91 TALYYCARLHY  101 (118)
T ss_dssp             CEEEEEEEEET
T ss_pred             ceEEEeeEecC
Confidence            99999976553

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.74  E-value=0.0087  Score=31.85  Aligned_cols=72  Identities=15%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEe--CCEEee--ccCC--CCC----------ceEEEc-cCCcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYK--DGELVE--TSKS--DAK----------SQRVIL-PTGSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k--~g~~~~--~~~~--~~~----------~~~~~~-~~~~~~~~~~i~~~~~   62 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|  .|+.+.  ....  ...          .+..+. ......+...+.+++.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~~   90 (121)
T d1nfdf1          11 LVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRV   90 (121)
T ss_dssp             EECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCCG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccCC
Confidence            46789999999999886544  368997  343321  0000  000          111111 1122233344567799


Q ss_pred             cCCeEEEEEeE
Q psy8666          63 QDGGVYWCLAR   73 (124)
Q Consensus        63 ~d~g~y~C~~~   73 (124)
                      +|.+.|.|-..
T Consensus        91 eDTAvYYCAr~  101 (121)
T d1nfdf1          91 DDTAIYYCTRA  101 (121)
T ss_dssp             GGCEECEEEEE
T ss_pred             CcceEEEEecc
Confidence            99999999644

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0074  Score=30.77  Aligned_cols=65  Identities=9%  Similarity=0.186  Sum_probs=40.8

Q ss_pred             EEecCCCEEEEEeeeccCCCeEEEE-eCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEPTIEWY-KDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p~v~w~-k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      .+.+|+.+.+.|.+.. |...++.+ .++..+....    ......+....    +|...+..+.|.|.|.+...
T Consensus        16 ~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g----~~v~~Dpk~Gf----~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          16 HMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDG----KRIIWDSRKGF----IISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCS----SSEEEETTTEE----EESSCCGGGCEEEEEEEEET
T ss_pred             EEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCC----CEEEECCCCCE----EEeCCCcccCeEEEEEEEEC
Confidence            4778999999999864 65666544 3555443211    12222233333    34556889999999998765

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.73  E-value=0.0094  Score=32.13  Aligned_cols=72  Identities=19%  Similarity=0.348  Sum_probs=41.1

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  ..+.|+|.  |+.+.  ......          ..+..+. .+........+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (130)
T d1rzga1          11 VKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSED   90 (130)
T ss_dssp             EECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCc
Confidence            4678999999999987643  45789873  33221  000000          0111111 122223333457778999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        91 tA~YYCAr~   99 (130)
T d1rzga1          91 TAVFYCASP   99 (130)
T ss_dssp             CEEEEEEEC
T ss_pred             cEEEEEEEe
Confidence            999999643

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.72  E-value=0.012  Score=31.18  Aligned_cols=73  Identities=19%  Similarity=0.389  Sum_probs=42.7

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee------c-cCC-----CCCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE------T-SKS-----DAKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~------~-~~~-----~~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+.      . ...     ....+..+. ......+...|..++.+|
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eD   90 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDD   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCc
Confidence            4678999999999987643  34789973  33221      0 000     001122222 122223344567889999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|-...
T Consensus        91 tAvYYCA~~~  100 (117)
T d1iqdb1          91 TAVYYCAVPD  100 (117)
T ss_dssp             CEEEEEEECS
T ss_pred             ceEEEEeEcC
Confidence            9999997554

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.72  E-value=0.012  Score=31.25  Aligned_cols=72  Identities=21%  Similarity=0.368  Sum_probs=41.5

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCC--C------C--CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKS--D------A--KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~--~------~--~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  ....  .      .  ..+..+. .+....+...+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eD   90 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSED   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCc
Confidence            46789999999999876543  5789873  33221  0000  0      0  0111111 122223334467789999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|...
T Consensus        91 TAvYYCAr~   99 (120)
T d1ad9b1          91 TAFYFCARE   99 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEc
Confidence            999999654

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.71  E-value=0.013  Score=31.46  Aligned_cols=72  Identities=21%  Similarity=0.333  Sum_probs=40.7

Q ss_pred             EEecCCCEEEEEeeeccCC----CeEEEEeC--CEEee--ccCCC---------CCceEEE-ccCCcEEEEEEEcCCCcc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE----PTIEWYKD--GELVE--TSKSD---------AKSQRVI-LPTGSLFFLRVVHGKKEQ   63 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~----p~v~w~k~--g~~~~--~~~~~---------~~~~~~~-~~~~~~~~~~~i~~~~~~   63 (124)
                      .+++|+.+.|.|.+.|...    ..+.|+|.  |+.+.  .....         ...+..+ ..+....+...|.+++.+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            4678999999999887532    24579863  32211  00000         0111211 122223344556788999


Q ss_pred             CCeEEEEEeE
Q psy8666          64 DGGVYWCLAR   73 (124)
Q Consensus        64 d~g~y~C~~~   73 (124)
                      |.+.|.|-..
T Consensus        91 DtAvYyCAr~  100 (126)
T d1etzb1          91 DTATYHCARR  100 (126)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccceEEEEEe
Confidence            9999999643

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.67  E-value=0.014  Score=31.32  Aligned_cols=73  Identities=21%  Similarity=0.341  Sum_probs=42.1

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEe--CCEEee-------ccCC---C--CCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYK--DGELVE-------TSKS---D--AKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k--~g~~~~-------~~~~---~--~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|  .|+.+.       ....   .  ...+..+. ......+...+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eD   90 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCccc
Confidence            3678999999999988654  3478987  333221       1000   0  01111111 122222334457788999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|....
T Consensus        91 TavYYCAR~~  100 (127)
T d2fx7h1          91 TAVYYCAREG  100 (127)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeecc
Confidence            9999997554

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.67  E-value=0.014  Score=31.35  Aligned_cols=73  Identities=19%  Similarity=0.351  Sum_probs=42.2

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee-------ccC---CC--CCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE-------TSK---SD--AKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~-------~~~---~~--~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.       ...   +.  ...+..+. .+...+....+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDD   90 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccC
Confidence            46789999999999986654  3678873  32221       000   00  01122221 222223334457778999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|....
T Consensus        91 TA~YYCAr~~  100 (128)
T d2nxyd1          91 TAVYFCAGVY  100 (128)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeEEe
Confidence            9999997654

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.66  E-value=0.014  Score=31.28  Aligned_cols=71  Identities=20%  Similarity=0.331  Sum_probs=40.6

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEe--CCEEee--cc--CCCC--------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYK--DGELVE--TS--KSDA--------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k--~g~~~~--~~--~~~~--------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|  .|+.+.  ..  ....        ..+..+. .........-+..++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~eD   90 (127)
T d1n0xh1          11 VKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSAD   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCCC
Confidence            4678999999999988654  3578987  333221  00  0000        1111111 111222333456778999


Q ss_pred             CeEEEEEe
Q psy8666          65 GGVYWCLA   72 (124)
Q Consensus        65 ~g~y~C~~   72 (124)
                      .+.|.|-.
T Consensus        91 tAvYYCAR   98 (127)
T d1n0xh1          91 TAVYYCAR   98 (127)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEe
Confidence            99999964

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.65  E-value=0.015  Score=31.46  Aligned_cols=73  Identities=21%  Similarity=0.389  Sum_probs=41.9

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCC--C--------CCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKS--D--------AKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~--~--------~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+.  ....  .        ...+..+. ..........+.+++.+|
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eD   90 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSED   90 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSS
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCccc
Confidence            4678999999999988653  34789973  33221  0000  0        01122222 112222233356778999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|....
T Consensus        91 TAvYYCAr~~  100 (135)
T d1ieha_          91 TAVYYCAKYS  100 (135)
T ss_dssp             CEEEEEEEBS
T ss_pred             ceeeEEEEec
Confidence            9999997653

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0077  Score=31.74  Aligned_cols=21  Identities=10%  Similarity=0.218  Sum_probs=16.6

Q ss_pred             EEEEcCCCccCCeEEEEEeEe
Q psy8666          54 LRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus        54 ~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      ...|.+++.+|.+.|.|.+..
T Consensus        78 ~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          78 TFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEESCCGGGCEEEEEEEEE
T ss_pred             EEEECCCCcccCeEEEEEEec
Confidence            345678899999999997554

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.64  E-value=0.0017  Score=33.43  Aligned_cols=70  Identities=16%  Similarity=0.099  Sum_probs=38.8

Q ss_pred             CCCEEEEEeeeccCCC--eEEEEeCCEEeeccCCC--CCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGKPEP--TIEWYKDGELVETSKSD--AKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~   76 (124)
                      ...+.|.|.+.+.-+.  .+.|+++|..+......  .........+++...... ..+...+...|.|.+....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~-l~v~~~~~~~ytC~V~H~s   87 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHID-VYVDGGLEHVYSCRVKGIA   87 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEE-EEECTTCGGGEEEEEEEGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEE-EEECCCCCCEEEEEEEeCC
Confidence            3468899999987433  47899988654322111  011111223344433332 2225556678999987643

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.64  E-value=0.014  Score=30.98  Aligned_cols=72  Identities=24%  Similarity=0.361  Sum_probs=41.6

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCC--C--------CCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKS--D--------AKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~--~--------~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  ....  .        ...+..+. .+........+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eD   90 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCccc
Confidence            36789999999999886543  5789873  32221  0000  0        01122111 122222334457789999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|...
T Consensus        91 TAvYYCAr~   99 (119)
T d1rz7h1          91 TAVYYCAAD   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999654

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.61  E-value=0.0059  Score=31.73  Aligned_cols=70  Identities=13%  Similarity=0.167  Sum_probs=38.3

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC-CeEEEEEeEeCCcc
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD-GGVYWCLARNSVGT   78 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d-~g~y~C~~~~~~~~   78 (124)
                      .+..+.|.|.+.+. |.. .+.|+++|..+.....   .......++....... ..+..++ ...|.|.+......
T Consensus        23 ~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~---~~~~~~~~gt~~~~S~-L~v~~~~w~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          23 LQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQ---EGNTMKTNDTYMKFSW-LTVPEKSLDKEHRCIVRHENNK   95 (107)
T ss_dssp             SSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCE---ECCCEECSSSEEEEEE-EEECTGGGGSCEEEEEEETTSG
T ss_pred             cCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEE---ccceecCCCeEEEEEE-EEEecccCCCeEEEEEEECCCC
Confidence            35678999999886 433 4799999876543210   0011122333322221 1223333 34699999986544

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.58  E-value=0.015  Score=30.75  Aligned_cols=72  Identities=24%  Similarity=0.399  Sum_probs=40.8

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEe--CCEEee------c-cC---CCC--CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYK--DGELVE------T-SK---SDA--KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k--~g~~~~------~-~~---~~~--~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|  .|+.+.      . ..   +..  ..+..+. ..........+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eD   90 (118)
T d1ct8b1          11 LVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCc
Confidence            4678999999999988653  3578987  343221      0 00   000  1111111 111222333456778999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        91 tAvYYCAr~   99 (118)
T d1ct8b1          91 SAIYYCARY   99 (118)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeee
Confidence            999999653

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.58  E-value=0.016  Score=30.99  Aligned_cols=72  Identities=22%  Similarity=0.373  Sum_probs=41.9

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEe--CCEEe------ecc-CC---CC--CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYK--DGELV------ETS-KS---DA--KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k--~g~~~------~~~-~~---~~--~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|  .|+.+      ... ..   ..  ..+..+. ......+...+.+++.+|
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eD   89 (126)
T d1lmka1          10 LMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSED   89 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCc
Confidence            46789999999999987544  468987  33322      100 00   00  1121111 222223334467889999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        90 TAvYYCAr~   98 (126)
T d1lmka1          90 SAVYYCARG   98 (126)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999643

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0023  Score=33.06  Aligned_cols=68  Identities=15%  Similarity=0.190  Sum_probs=38.3

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~   76 (124)
                      ++.+.|.|.+.+. |.. .+.|+++|..+......  .......++....... ..+...+   ...|.|.+....
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~--~~~~~~~dgtys~~S~-L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET--TTPSKQSNNKYAASSY-LSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE--CCCEECTTSCEEEEEE-EEECHHHHHHSSCEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEe--CCcEECCCCEEEEEEE-EEECHHHhCCCCEEEEEEEECC
Confidence            5678999999885 433 58999999876532100  1111222333222221 2224433   567999998853

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.55  E-value=0.017  Score=30.82  Aligned_cols=72  Identities=25%  Similarity=0.386  Sum_probs=41.1

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  ......          ..+..+. .+........+...+.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eD   90 (124)
T d1yedb1          11 LVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSED   90 (124)
T ss_dssp             EECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCc
Confidence            46789999999999886543  5789873  33221  000000          1111111 122222333456778999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        91 TAvYYCAR~   99 (124)
T d1yedb1          91 SAVYFCTRW   99 (124)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEeccc
Confidence            999999654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.54  E-value=0.017  Score=30.75  Aligned_cols=73  Identities=19%  Similarity=0.407  Sum_probs=41.9

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+.  ......          ..+..+. .+........|.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eD   90 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccccc
Confidence            3678999999999987543  34789873  33221  000000          1111111 222223334467889999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|....
T Consensus        91 tAvYYCAr~~  100 (121)
T d1ol0a_          91 TAVYYCAREP  100 (121)
T ss_dssp             CEEEEEEECC
T ss_pred             ceEEEEEEec
Confidence            9999996543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0032  Score=32.80  Aligned_cols=30  Identities=33%  Similarity=0.616  Sum_probs=23.5

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCEEeec
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGELVET   34 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~   34 (124)
                      .++.+.|.|.+.+. |.. .+.|+++|..+..
T Consensus        19 ~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~   50 (108)
T d1ow0a2          19 LNELVTLTCLARGFSPKDVLVRWLQGSQELPR   50 (108)
T ss_dssp             SSSEEEEEEEEEEESSSCCEEEEEETTEECCG
T ss_pred             cCCceEEEEEEEEeECCCEEEEEEECCeEcCC
Confidence            36679999999875 443 6899999987764

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.51  E-value=0.0033  Score=31.94  Aligned_cols=68  Identities=18%  Similarity=0.297  Sum_probs=37.6

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      ++.+.|.|.+.+. |.. .+.|+++|..+...... ........++.......+ .+...+...|.|.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~-~~~~~~~~~~ty~~~s~l-~v~~~~~~~ytC~V~H~   84 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQ-WGDVLPDGNGTYQTWVAT-RICQGEEQRFTCYMEHS   84 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSE-ECCCEECSSSCEEEEEEE-EEETTCGGGEEEEEEET
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEE-cCceEECCCCcEEEEEEE-EEcCCCCCEEEEEEEEC
Confidence            3457899999986 544 58999999877532110 011111223333322221 22444556799998764

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.47  E-value=0.02  Score=30.68  Aligned_cols=73  Identities=19%  Similarity=0.355  Sum_probs=42.4

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  ..+.|+|.  |+.+.  ......          ..+..+. .+....+...+.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eD   90 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAED   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCc
Confidence            3678999999999988653  35789973  33221  110000          0111111 122223334467779999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|....
T Consensus        91 tavYYCAr~~  100 (126)
T d1dfbh1          91 MALYYCVKGR  100 (126)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEEecc
Confidence            9999996554

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.39  E-value=0.022  Score=30.31  Aligned_cols=73  Identities=23%  Similarity=0.338  Sum_probs=41.5

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCCC----------ceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDAK----------SQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~~----------~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  ..+.|+|.  |+.+.  .......          .+..+. ..........|.+++.+|
T Consensus        11 ~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eD   90 (121)
T d1j05b_          11 LVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCc
Confidence            4678999999999887543  45789873  33221  0000000          111111 111222334567889999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|....
T Consensus        91 tAvYYCAr~~  100 (121)
T d1j05b_          91 TAVYYCAPFG  100 (121)
T ss_dssp             CEEEEEEEEB
T ss_pred             ceEEEeEeec
Confidence            9999996543

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.38  E-value=0.023  Score=30.35  Aligned_cols=73  Identities=18%  Similarity=0.267  Sum_probs=41.6

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  ......          ..+..+. .+........+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eD   90 (124)
T d2b1hh1          11 VKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSD   90 (124)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccccc
Confidence            46789999999999986543  4789872  33221  000000          1111111 122222333457778999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|-...
T Consensus        91 TA~YYCAR~~  100 (124)
T d2b1hh1          91 TALYYCARLG  100 (124)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeecC
Confidence            9999995443

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0047  Score=30.88  Aligned_cols=76  Identities=17%  Similarity=0.270  Sum_probs=41.1

Q ss_pred             ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCC-ccCCeEEEEEeEeCCccceee
Q psy8666           4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKK-EQDGGVYWCLARNSVGTAVSR   82 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~d~g~y~C~~~~~~~~~~~~   82 (124)
                      .-|+.+.+.|+..  ....+.|.+++..+....  .+.. .......+.    +.... .++.|-|.|.+..........
T Consensus         8 ISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~--~~~~-~~~~~~~l~----L~dfSe~e~sGyY~C~~~~~~~~~~~~   78 (91)
T d1xiwa_           8 ISGTTVILTCPQY--PGSEILWQHNDKNIGGDE--DDKN-IGSDEDHLS----LKEFSELEQSGYYVCYPRGSKPEDANF   78 (91)
T ss_dssp             EETTEEEEECSSC--TTSCEEEEETTEEESSSC--SCTT-EEEETTEEE----ETTCCHHHHCEEEEEEETTSCGGGCCE
T ss_pred             EeCCEEEEECCCC--CCCceeeeeccccccCCC--cccc-cccccceEE----ecccCccccCceEEEEcCCCCCCCcce
Confidence            4588999999742  446799999988766421  0000 011111221    12223 368999999876543333223


Q ss_pred             eEEEEE
Q psy8666          83 NATLQV   88 (124)
Q Consensus        83 ~~~l~v   88 (124)
                      .+.|..
T Consensus        79 ~LYLKA   84 (91)
T d1xiwa_          79 YLYLRA   84 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            344443

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.36  E-value=0.02  Score=29.55  Aligned_cols=71  Identities=24%  Similarity=0.344  Sum_probs=36.1

Q ss_pred             cCCCEEEEEeeeccCCC--eEEEEeC--CEEee------ccC------CCCCceEEEc-cCCcEEEEEEEcCCCccCCeE
Q psy8666           5 KNEPVTLNCKAEGKPEP--TIEWYKD--GELVE------TSK------SDAKSQRVIL-PTGSLFFLRVVHGKKEQDGGV   67 (124)
Q Consensus         5 ~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~------~~~------~~~~~~~~~~-~~~~~~~~~~i~~~~~~d~g~   67 (124)
                      +|+.++|.|.+.|....  .+.|+|.  |+.+.      ...      .....+..+. ......+...+.+++.+|.+.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            58899999999886543  5889973  33221      000      0011222222 122233344567789999999


Q ss_pred             EEEEeEeC
Q psy8666          68 YWCLARNS   75 (124)
Q Consensus        68 y~C~~~~~   75 (124)
                      |.|-....
T Consensus        81 YYCAr~~~   88 (103)
T d1oari_          81 YYCARMWY   88 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEeEEECC
Confidence            99975443

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.33  E-value=0.024  Score=30.16  Aligned_cols=73  Identities=16%  Similarity=0.400  Sum_probs=42.5

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee------ccCCC--------CCceEEEc-cCCcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE------TSKSD--------AKSQRVIL-PTGSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~------~~~~~--------~~~~~~~~-~~~~~~~~~~i~~~~~   62 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.      .....        ...+..+. ......+...+..++.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   90 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRA   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeecc
Confidence            46789999999999876543  5789973  33221      00000        01122221 1222233344577799


Q ss_pred             cCCeEEEEEeEe
Q psy8666          63 QDGGVYWCLARN   74 (124)
Q Consensus        63 ~d~g~y~C~~~~   74 (124)
                      +|.+.|.|....
T Consensus        91 eDTAvYYCar~~  102 (122)
T d1q9rb1          91 EDSATYYCARDH  102 (122)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CcceEEEEEecC
Confidence            999999997543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.26  E-value=0.0079  Score=30.45  Aligned_cols=53  Identities=21%  Similarity=0.517  Sum_probs=33.6

Q ss_pred             ecCCCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEe
Q psy8666           4 AKNEPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLA   72 (124)
Q Consensus         4 ~~G~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~   72 (124)
                      .-|+.+.|.|+..+  ...+.|.+++..+...           ....+....+   ...+++|.|.|..
T Consensus        12 ISGTtV~LTCP~~~--~~~I~Wkkn~~~i~g~-----------~~~~L~L~~F---SE~e~SGyY~C~~   64 (100)
T d1jbja2          12 ISGTSVELTCPLDS--DENLKWEKNGQELPQK-----------HDKHLVLQDF---SEVEDSGYYVCYT   64 (100)
T ss_dssp             EETTEEEEECSSCC--CTTCEEEETTEEECSC-----------CCSEEEEESC---CTTTSCEEEEEEC
T ss_pred             EeCCEEEEECCCCC--CCceEEeeccccCCCC-----------CCcEEEEccc---cccccCcceEEec
Confidence            35889999998654  3569999999877632           0111111111   1347899999963

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.24  E-value=0.028  Score=30.03  Aligned_cols=73  Identities=21%  Similarity=0.371  Sum_probs=42.0

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee------ccC----CCC--CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE------TSK----SDA--KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~------~~~----~~~--~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  ..+.|+|.  |+.+.      ...    +..  ..+..+. .+........|.+++.+|
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eD   90 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVED   90 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCcc
Confidence            3678999999999987543  35789973  33221      000    000  1112111 122223334467789999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|-...
T Consensus        91 TAvYYCAr~~  100 (125)
T d1op3h1          91 TAIYYCARKG  100 (125)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceeEeEeecc
Confidence            9999997543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.16  E-value=0.03  Score=29.67  Aligned_cols=73  Identities=16%  Similarity=0.344  Sum_probs=42.5

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEe--CCEEee------ccCCC--------CCceEEEc-cCCcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYK--DGELVE------TSKSD--------AKSQRVIL-PTGSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k--~g~~~~------~~~~~--------~~~~~~~~-~~~~~~~~~~i~~~~~   62 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|  .|+.+.      .....        ...+..+. ......+...+.+++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~   90 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC
Confidence            4678999999999987643  3578997  344321      00000        01122221 2222233344577899


Q ss_pred             cCCeEEEEEeEe
Q psy8666          63 QDGGVYWCLARN   74 (124)
Q Consensus        63 ~d~g~y~C~~~~   74 (124)
                      +|.+.|.|....
T Consensus        91 eDtAvYYCA~~~  102 (120)
T d1dlfh_          91 EDTGIYYCTGIY  102 (120)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CCceEEEeeEec
Confidence            999999996543

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.023  Score=29.06  Aligned_cols=69  Identities=16%  Similarity=0.308  Sum_probs=36.2

Q ss_pred             cCCCEEEEEeeecc-CCC-e-EEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCCcc
Q psy8666           5 KNEPVTLNCKAEGK-PEP-T-IEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSVGT   78 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~-v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~~~   78 (124)
                      .++.+.|.|.+.+. |.. . +.|.+++..+....    .......++....... ..+...+   ...|.|.+......
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~----~~~~~~~~gtys~~S~-L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN----FPPALASGGRYTMSNQ-LTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE----CCCEECSSSCEEEEEE-EEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeE----eeeEecCCCCEEEEEE-EEEeHHHccCCCEEEEEEEECCCC
Confidence            35678999999985 553 3 45667765443210    1111223333222211 1223333   56799999886443

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.02  E-value=0.039  Score=29.69  Aligned_cols=72  Identities=21%  Similarity=0.317  Sum_probs=41.1

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCC----C--------CCceEEEc-cCCcEEEEEEEcCCCc
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKS----D--------AKSQRVIL-PTGSLFFLRVVHGKKE   62 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~----~--------~~~~~~~~-~~~~~~~~~~i~~~~~   62 (124)
                      .+++|+.+.|.|.+.|...  ..+.|+|.  |+.+.  ....    .        ...+..+. .+....+...+.+++.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~   90 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKT   90 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecccc
Confidence            4678999999999987653  35789973  33221  0000    0        01111111 1112223334567799


Q ss_pred             cCCeEEEEEeE
Q psy8666          63 QDGGVYWCLAR   73 (124)
Q Consensus        63 ~d~g~y~C~~~   73 (124)
                      +|.+.|.|-..
T Consensus        91 eDTAvYYCAR~  101 (131)
T d3c2ah1          91 EDTAVYSCTTD  101 (131)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEecc
Confidence            99999999644

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=95.95  E-value=0.039  Score=29.13  Aligned_cols=73  Identities=21%  Similarity=0.345  Sum_probs=42.1

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEeC--CEEee--ccCC-C--------CCceEEEc-cCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYKD--GELVE--TSKS-D--------AKSQRVIL-PTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k~--g~~~~--~~~~-~--------~~~~~~~~-~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|.  |+.+.  .... .        ...+..+. .+........+...+.+|.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence            46789999999999887544  5789973  33221  0000 0        00111111 1222223334577789999


Q ss_pred             eEEEEEeEe
Q psy8666          66 GVYWCLARN   74 (124)
Q Consensus        66 g~y~C~~~~   74 (124)
                      +.|.|-...
T Consensus        91 A~YyCAr~~   99 (118)
T d1lo4h1          91 AIYYCARGT   99 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEecccC
Confidence            999996543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0091  Score=30.87  Aligned_cols=70  Identities=14%  Similarity=0.299  Sum_probs=38.5

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc---CCeEEEEEeEeCCc
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ---DGGVYWCLARNSVG   77 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---d~g~y~C~~~~~~~   77 (124)
                      ++.++|.|.+.+. |. -.+.|+++|..+....... .......++....... ..+..+   ....|.|.+.....
T Consensus        19 ~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~-~~~~~~~~gtys~~S~-L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          19 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHST-TQPRKTKGSGFFVFSR-LEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEE-CCCEECSSSCEEEEEE-EEECHHHHTTGGGEEEEEECTTS
T ss_pred             CCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEe-eeeEecCCCCEEEEEE-EEECHHHcCCCCEEEEEEEECCC
Confidence            5678999999875 43 4789999998765321000 0111122333322211 112332   34679999987543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=95.95  E-value=0.042  Score=29.42  Aligned_cols=73  Identities=22%  Similarity=0.373  Sum_probs=42.1

Q ss_pred             EEecCCCEEEEEeeeccCC--CeEEEEeC--CEEee--ccCCCC----------CceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPE--PTIEWYKD--GELVE--TSKSDA----------KSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~--p~v~w~k~--g~~~~--~~~~~~----------~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|...  -.+.|+|.  |+.+.  ......          ..+..+. ..........+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eD   90 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecc
Confidence            4678999999999987643  35789873  33221  000000          0111111 222223334467778999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|....
T Consensus        91 TA~YYCAr~~  100 (127)
T d2fb4h1          91 TGVYFCARDG  100 (127)
T ss_dssp             CEEEEEEEEC
T ss_pred             eeEEEEEEec
Confidence            9999997554

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.006  Score=31.70  Aligned_cols=69  Identities=12%  Similarity=0.169  Sum_probs=37.1

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~   76 (124)
                      +..+.|.|.+.+. |. -.+.|+++|..+...... ........++....... ..+...+   ...|.|.+....
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~-~~~~~~~~dgtys~~S~-L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN-SWTDQDSKDSTYSMSST-LTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE-EECCCCTTTCCEEEEEE-EEEEHHHHHTCCEEEEEEECTT
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEccCCeEe-ccccEecCCCCEEEEEE-EEECHHHhCCCCEEEEEEEECC
Confidence            4567899999875 44 368999999876532000 00000112233222111 1224433   678999998754

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.94  E-value=0.035  Score=29.26  Aligned_cols=72  Identities=25%  Similarity=0.405  Sum_probs=41.4

Q ss_pred             EEecCCCEEEEEeeeccC--CCeEEEEeC--CEEee--ccCC--CC--------CceEEEcc-CCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKP--EPTIEWYKD--GELVE--TSKS--DA--------KSQRVILP-TGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p--~p~v~w~k~--g~~~~--~~~~--~~--------~~~~~~~~-~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|..  .-.+.|+|.  |+.+.  ....  ..        ..+..+.. .........+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eD   90 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPED   90 (117)
T ss_dssp             EECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCc
Confidence            468899999999998753  345679873  32211  0000  00        01222221 22223334467789999


Q ss_pred             CeEEEEEeE
Q psy8666          65 GGVYWCLAR   73 (124)
Q Consensus        65 ~g~y~C~~~   73 (124)
                      .+.|.|-..
T Consensus        91 TAvYYCAr~   99 (117)
T d1b2wh1          91 TAVYYCARG   99 (117)
T ss_dssp             CEEEECCEE
T ss_pred             ceEEEEccc
Confidence            999999543

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.93  E-value=0.024  Score=28.16  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=35.1

Q ss_pred             CCEEEEEeeeccCCC--eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEeC
Q psy8666           7 EPVTLNCKAEGKPEP--TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARNS   75 (124)
Q Consensus         7 ~~~~l~C~~~~~p~p--~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~   75 (124)
                      +...+.|.+.+.-++  .+.|.++|......     .......++........   +-.....|.|.+...
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~-----~~~~~~~~gtys~~s~~---~~~~~~~yTC~V~H~   76 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFD-----PAIVISPSGKYNAVKLG---KYEDSNSVTCSVQHD   76 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECC-----CEEEECTTSSEEEEEEE---EETTTTTCEEEEEET
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCc-----EEeeeccCCcEEEEEEE---ecCCCCEEEEEEEEC
Confidence            446899999887333  47899999876532     11222334443333322   122344699998874

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.031  Score=28.76  Aligned_cols=69  Identities=17%  Similarity=0.217  Sum_probs=37.3

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC-----CeEEEEEeEeCCcc
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD-----GGVYWCLARNSVGT   78 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d-----~g~y~C~~~~~~~~   78 (124)
                      ...+.|.|.+.+. |. -.++|.++|.........  .. ....++..... ....+...+     ...|.|.+......
T Consensus        21 ~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~--~~-~~~~~gtys~~-S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          21 TSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRG--FP-SVLRGGKYAAT-SQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEE--CC-CEEETTEEEEE-EEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             CCceEEEEEEecccCCcEEEEEEECCccccCCEEc--ce-EEccCCCEEEE-EEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            4668899999885 54 358999988765422100  00 11123332222 112223333     24799999986543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.70  E-value=0.012  Score=31.16  Aligned_cols=73  Identities=21%  Similarity=0.341  Sum_probs=40.0

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEe--CCEEee--ccCCC-CC--------ceEEEc-cCCcEEEEEEEcCCCccCC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYK--DGELVE--TSKSD-AK--------SQRVIL-PTGSLFFLRVVHGKKEQDG   65 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k--~g~~~~--~~~~~-~~--------~~~~~~-~~~~~~~~~~i~~~~~~d~   65 (124)
                      .+++|+.++|.|.+.|....  .+.|+|  .|+.+.  ..... ..        .+..+. ..........+.+++.+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            35789999999999886543  478997  343321  11000 00        010000 1111122233456789999


Q ss_pred             eEEEEEeEe
Q psy8666          66 GVYWCLARN   74 (124)
Q Consensus        66 g~y~C~~~~   74 (124)
                      +.|.|-...
T Consensus        91 AvYyCAr~~   99 (116)
T d1fn4b1          91 GTYYCTRDL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999996543

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.52  E-value=0.068  Score=28.78  Aligned_cols=73  Identities=19%  Similarity=0.375  Sum_probs=41.7

Q ss_pred             EEecCCCEEEEEeeeccCCC--eEEEEe--CCEEee--ccCC--C--------CCceEEEc-cCCcEEEEEEEcCCCccC
Q psy8666           2 VVAKNEPVTLNCKAEGKPEP--TIEWYK--DGELVE--TSKS--D--------AKSQRVIL-PTGSLFFLRVVHGKKEQD   64 (124)
Q Consensus         2 ~~~~G~~~~l~C~~~~~p~p--~v~w~k--~g~~~~--~~~~--~--------~~~~~~~~-~~~~~~~~~~i~~~~~~d   64 (124)
                      .+++|+.+.|.|.+.|....  .+.|+|  .|+.+.  ....  .        ...+..+. .+........+.+++.+|
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eD   89 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDD   89 (133)
T ss_dssp             EECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCC
Confidence            46789999999999886544  467987  333221  0000  0        01111111 122223333456778999


Q ss_pred             CeEEEEEeEe
Q psy8666          65 GGVYWCLARN   74 (124)
Q Consensus        65 ~g~y~C~~~~   74 (124)
                      .+.|.|-...
T Consensus        90 tA~YYCAr~~   99 (133)
T d1rzfh1          90 TAVYYCASNS   99 (133)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEeeecc
Confidence            9999996544

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.51  E-value=0.0087  Score=30.86  Aligned_cols=68  Identities=12%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc---cCCeEEEEEeEeCCc
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE---QDGGVYWCLARNSVG   77 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~~   77 (124)
                      +..+.+.|.+.+. |.. .+.|+++|..+......   ......++... ......+..   .+...|.|.+.....
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~---~~~~~~~~tys-~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKT---TKPSKQGQNYM-TSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBC---CCCBCSSSCEE-EEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEe---ccccCCCceEE-EEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            4567899999885 433 68999999987643111   11111223222 222222233   235679999988643

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.025  Score=28.96  Aligned_cols=68  Identities=13%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             cCCCEEEEEeeecc-CC---CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc---CCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PE---PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ---DGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~---p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---d~g~y~C~~~~~~   76 (124)
                      .+..+.+.|.+.+. |.   -.++|+++|........   .......++..... ....+..+   ....|.|.+....
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~---~~~~~~~~gtys~~-S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQT---HAPEKQSNSTLRSV-SELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEE---CCCEECTTSCEEEE-EEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEE---CCcEECCCCCEEEE-EEEEECHHHhcCCCEEEEEEEeCC
Confidence            35668899999875 43   36789999887653210   11112233332222 22233443   2456999998754

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.023  Score=29.04  Aligned_cols=67  Identities=25%  Similarity=0.504  Sum_probs=37.7

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc---cCCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE---QDGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~   76 (124)
                      ++.+.|.|.+.+. |. -.++|+++|.......   ........++....... ..+..   .....|.|.+....
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~---~~~~~~~~dgtys~~S~-L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK---TTPPVLDSDGSFFLYSK-LTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE---ECCCEECTTSCEEEEEE-EEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEECCCeE---EcceEECCCCCEEEEEE-EEECHHHcCCCCEEEEEEEeCC
Confidence            5668899999885 43 3689999998755321   01111223343322222 11122   23457999998854

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.061  Score=27.41  Aligned_cols=68  Identities=15%  Similarity=0.258  Sum_probs=36.4

Q ss_pred             cCCCEEEEEeeecc-CC---CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PE---PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~---p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~   76 (124)
                      .++.++|.|.+.+. |.   -.+.|++++......   .........++...... ...+..++   ...|.|.+....
T Consensus        15 ~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~---~~~~~~~~~~gt~s~~S-~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          15 IRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNH---STRKEEKQRNGTLTVTS-TLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             TTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCC---CEEEEEEETTTEEEEEE-EEECCHHHHHTTCCEEEEEECSS
T ss_pred             hCCCeEEEEEEEeeECCCceEEEEEcCCCceeccc---EEcccEECCCCCEEEEE-EEEEcHHHhCCCCeEEEEEEECC
Confidence            35678999999875 43   245788877654321   11111222333322222 22234433   578999998754

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.036  Score=27.10  Aligned_cols=51  Identities=24%  Similarity=0.453  Sum_probs=29.8

Q ss_pred             CCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeE
Q psy8666           7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLAR   73 (124)
Q Consensus         7 ~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~   73 (124)
                      ..+.|.|..   ...+++|++++..+...         .....++-.-..    -....|.|.|...
T Consensus        18 g~V~L~Cn~---~~k~i~W~kdg~~i~~~---------~~~~ktlnLG~~----~~DPRG~Y~C~~~   68 (81)
T d1sy6a1          18 GSVLLTCDA---EAKNITWFKDGKMIGFL---------TEDKKKWNLGSN----AKDPRGMYQCKGS   68 (81)
T ss_dssp             SEEEEEECS---CSSEEEEEETTEEEEEE---------ESSCCCEEEEEG----GGCCEEEEEEESS
T ss_pred             CeEEEEeCC---CCcEEEEecCCeEeecc---------cCCcceeecCCc----ccCCCcceEcCCC
Confidence            347788843   45589999999865521         112223322222    3445799999653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.31  E-value=0.016  Score=29.62  Aligned_cols=67  Identities=24%  Similarity=0.415  Sum_probs=37.4

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc---CCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ---DGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---d~g~y~C~~~~~~   76 (124)
                      ++.+.|.|.+.+. |. -.++|.++|.......   ........++....... ..+..+   ....|.|.+....
T Consensus        19 ~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~---~~~~~~~~dgtys~~S~-L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          19 KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYK---NTEPVLDSDGSYFMYSK-LRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEE---ECCCEECTTSCEEEEEE-EEEEHHHHHTCCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcE---EccceeCCCCcEEEEEE-EEECHHHcCCCCEEEEEEEeCC
Confidence            5568899999885 53 4689999997643211   01111223333222221 122443   3567999998754

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.27  E-value=0.07  Score=28.00  Aligned_cols=68  Identities=15%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             cCCCEEEEEeeecc-CC---CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc---CCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PE---PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ---DGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~---p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---d~g~y~C~~~~~~   76 (124)
                      .+..+.+.|.+.+. |.   -.++|+++|.......   ........++....... ..+..+   ....|.|.+....
T Consensus        31 ~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~---~~~~~~~~~gt~s~~S~-L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          31 ISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ---TQTHREDYNSTLRVVSA-LPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             TTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTT---CBCCEEECSSSEEEEEE-EECCHHHHHTTCEEEEEEECTT
T ss_pred             cCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCE---ECccEECCCCcEEEEEE-EEEeHHHhCCCCeEEEEEEECC
Confidence            36678999999875 43   3578999998765321   11112223343322222 223443   3567999999754

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.27  E-value=0.017  Score=29.59  Aligned_cols=67  Identities=25%  Similarity=0.458  Sum_probs=37.4

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc---cCCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE---QDGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~   76 (124)
                      .+.+.|.|.+.+. |. -.++|+++|........   .......++....... ..+..   .....|.|.+....
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~---~~~~~~~dgtys~~S~-L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKN---TQPIMDTDGSYFVYSK-LNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEE---CCCEECTTSCEEEEEE-EEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEE---eeeecCCCCcEEEEEE-EEECHHHhCCCCEEEEEEEECC
Confidence            3457899999885 53 36899999987543210   1111223333222221 11233   23577999998753

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.10  E-value=0.025  Score=28.90  Aligned_cols=67  Identities=24%  Similarity=0.431  Sum_probs=36.8

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCc---cCCeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKE---QDGGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~d~g~y~C~~~~~~   76 (124)
                      .+.+.|.|.+.+. |. -.++|+++|.......   ........++....... ..+..   .....|.|.+....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~---~~~~~~~~dgt~s~~S~-L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYK---NTPPTMDTDGSYFLYSK-LNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEE---ECCCEECTTSCEEEEEE-EEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcE---EcccEeCCCCCEEEEEE-EEECHHHhCCCCEEEEEEEeCC
Confidence            4568899999876 33 3689999998654211   01111223333222211 11132   33567999998853

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.078  Score=27.03  Aligned_cols=68  Identities=22%  Similarity=0.321  Sum_probs=39.2

Q ss_pred             cCCCEEEEEeeecc-CC---CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCcc---CCeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK-PE---PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQ---DGGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~---p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---d~g~y~C~~~~~~   76 (124)
                      .+..+.|.|.+.+. |.   -.+.|.+++..+.....   .......++...+... ..+..+   ....|.|.+....
T Consensus        17 ~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~---~~~~~~~~gtys~~S~-L~v~~~~W~~g~~ytC~V~H~~   91 (105)
T d1l6xa1          17 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT---KPREEQYNSTYRVVSV-LTVLHQDWLNGKEYKCKVSNKA   91 (105)
T ss_dssp             TTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE---CCCEECTTSCEEEEEE-EECCHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEE---CCcEECCCCcEEEEEE-EEEcHHHcCCCCEEEEEEEeCC
Confidence            36678999999875 43   35679999987653211   1111233344333222 223443   3568999998754

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.25  E-value=0.047  Score=26.92  Aligned_cols=23  Identities=39%  Similarity=0.885  Sum_probs=17.3

Q ss_pred             CEEEEEeeeccCCCeEEEEeCCEEee
Q psy8666           8 PVTLNCKAEGKPEPTIEWYKDGELVE   33 (124)
Q Consensus         8 ~~~l~C~~~~~p~p~v~w~k~g~~~~   33 (124)
                      .+.|.|..   ....++|++++..+.
T Consensus        24 sV~L~Cn~---~~k~i~W~kdg~~i~   46 (86)
T d1jbja1          24 SVLLTCGL---TDKTIKWLKDGSIIS   46 (86)
T ss_dssp             EEEEECSS---SCSCEEEEETTEECC
T ss_pred             eEEEEeCC---CCcEEEEecCCceec
Confidence            47788844   345899999998765

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.061  Score=27.62  Aligned_cols=28  Identities=18%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEee
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVE   33 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~   33 (124)
                      .+.+.|.|.+.+. |. -.++|+++|....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQS   49 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECC
Confidence            4568899999875 54 3689999998665

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.076  Score=26.17  Aligned_cols=48  Identities=29%  Similarity=0.390  Sum_probs=26.7

Q ss_pred             CCCEEEEEeeeccCCCeEEEEeCCEE-eeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEE
Q psy8666           6 NEPVTLNCKAEGKPEPTIEWYKDGEL-VETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCL   71 (124)
Q Consensus         6 G~~~~l~C~~~~~p~p~v~w~k~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~   71 (124)
                      |..+.+.|...  ....|.|-+++.. +..            ....+.+..-    ...+.|.|+|.
T Consensus        21 ~~~V~L~C~t~--eE~~I~W~kd~~se~~~------------~GntltV~Vk----E~~~aGnYTCh   69 (87)
T d3d85d1          21 GEMVVLTCDTP--EEDGITWTLDQSSEVLG------------SGKTLTIQVK----EFGDAGQYTCH   69 (87)
T ss_dssp             CEEEEEECSSS--CCSSCEEEETTCCCCCE------------ESSEEEEEEC----SGGGCEEEEEE
T ss_pred             ccEEEEecCCC--cccccEEeeCCcccccc------------CCCEEEEEEE----eccCCcceeEe
Confidence            44577788432  1246899998754 211            1122222211    34688999997

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.92  E-value=0.082  Score=28.02  Aligned_cols=28  Identities=32%  Similarity=0.723  Sum_probs=21.5

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEee
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVE   33 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~   33 (124)
                      +..+.|.|.+.+. |.. .+.|+++|..+.
T Consensus        20 ~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~   49 (127)
T d1ogae2          20 TQKATLVCLATGFYPDHVELSWWVNGKEVH   49 (127)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CCcEEEEEEEEeccCCCeEEEEEECCEEcc
Confidence            4568899999886 433 589999998775

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.84  E-value=0.023  Score=29.12  Aligned_cols=26  Identities=38%  Similarity=0.785  Sum_probs=17.3

Q ss_pred             cCCCEEEEEeeecc-CCC-eEEEEeCCE
Q psy8666           5 KNEPVTLNCKAEGK-PEP-TIEWYKDGE   30 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~p-~v~w~k~g~   30 (124)
                      .++.+.|.|.+.+. |.. .+.|.+++.
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~   46 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSL   46 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCc
Confidence            35679999999886 433 589976653

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.76  E-value=0.014  Score=29.84  Aligned_cols=27  Identities=33%  Similarity=0.618  Sum_probs=19.6

Q ss_pred             cCCCEEEEEeeecc-CC-CeEEEEeCCEE
Q psy8666           5 KNEPVTLNCKAEGK-PE-PTIEWYKDGEL   31 (124)
Q Consensus         5 ~G~~~~l~C~~~~~-p~-p~v~w~k~g~~   31 (124)
                      .++.+.|.|.+.+. |. -.+.|.+++..
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~   47 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALS   47 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCc
Confidence            35678999999885 43 35899877753

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.059  Score=27.47  Aligned_cols=67  Identities=19%  Similarity=0.334  Sum_probs=34.3

Q ss_pred             CCCEEEEEeeecc-CCC-eEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC--CeEEEEEeEeCCc
Q psy8666           6 NEPVTLNCKAEGK-PEP-TIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD--GGVYWCLARNSVG   77 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~p-~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d--~g~y~C~~~~~~~   77 (124)
                      +..+.|.|.+.+. |.. .++|.+++......    ........++...+...+ .+...+  ...|.|.+.....
T Consensus        20 ~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~----t~~~~~~~~gtys~~S~L-~v~~~~w~~~~ytC~V~H~~~   90 (103)
T d1c5ch2          20 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVH----TFPAVLQSSGLYSLSSVV-TVPSSSLGTQTYICNVNHKPS   90 (103)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE----ECCCEECTTSCEEEEEEE-EEEGGGGGTCCCEEEEEEGGG
T ss_pred             CCeEEEEEEEEeEeCCCeEEEECcCCCCCCEE----ECCCeECCCCCEEEEEEE-EECccccCCCeEEEEEEeCCC
Confidence            4568899999876 433 58998776432110    011112233332222111 112222  4569999998654

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.014  Score=29.81  Aligned_cols=66  Identities=15%  Similarity=0.152  Sum_probs=36.1

Q ss_pred             cCCCEEEEEeeecc--CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCC
Q psy8666           5 KNEPVTLNCKAEGK--PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSV   76 (124)
Q Consensus         5 ~G~~~~l~C~~~~~--p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~   76 (124)
                      .++.+.|.|.+.+.  |. -.++|++++.......     ......++..... ....+...+   ...|.|.+....
T Consensus        17 ~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~-----~~~~~~~gt~s~~-S~L~v~~~~W~~g~~ftC~V~H~~   88 (101)
T d1ow0a1          17 LGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQG-----PPERDLCGCYSVS-SVLPGCAEPWNHGKTFTCTAAYPE   88 (101)
T ss_dssp             HCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEEC-----CCCCCSTTCCCEE-EECTTTHHHHHHTCEEEEEECCSS
T ss_pred             cCCCeEEEEEEeCCCCCcceEEEEEECCceeeeec-----ceEECCCCCEEEE-EEEEEcHHHcCCCCeEEEEEEeCC
Confidence            46788999999875  33 3689998765322110     0011122222222 223334443   679999998754

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.43  Score=22.67  Aligned_cols=47  Identities=19%  Similarity=0.311  Sum_probs=24.7

Q ss_pred             CCEEEEEeeeccCCCeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccCCeEEEEEeEe
Q psy8666           7 EPVTLNCKAEGKPEPTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQDGGVYWCLARN   74 (124)
Q Consensus         7 ~~~~l~C~~~~~p~p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~   74 (124)
                      +.+.+.|.      .++.|++++.....           .....+-.-..    -....|.|.|.+..
T Consensus        10 ~~V~L~Cn------~si~W~k~~~~~~~-----------~~~k~lnLG~~----~~DPRG~Y~C~~~e   56 (74)
T d1xiwb_          10 DRVFVNCN------TSITWVEGTVGTLL-----------SDITRLDLGKR----ILDPRGIYRCNGTD   56 (74)
T ss_dssp             TEEEEECS------SCEEEEEECCCEEE-----------GGGTEEEEEEG----GGCCEEEEEEC---
T ss_pred             CeEEEEcc------CeeEEecCCccccc-----------CCccEeecCCc----ccCCCcceEeCCcc
Confidence            35778883      57999997643321           11122211221    24457999996553

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.25  E-value=0.088  Score=27.21  Aligned_cols=65  Identities=20%  Similarity=0.360  Sum_probs=35.1

Q ss_pred             CCCEEEEEeeecc-CC-CeEEEEeCCEEeeccCCCCCceEEEccCCcEEEEEEEcCCCccC---CeEEEEEeEeCC
Q psy8666           6 NEPVTLNCKAEGK-PE-PTIEWYKDGELVETSKSDAKSQRVILPTGSLFFLRVVHGKKEQD---GGVYWCLARNSV   76 (124)
Q Consensus         6 G~~~~l~C~~~~~-p~-p~v~w~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d---~g~y~C~~~~~~   76 (124)
                      +..+.|.|.+.+. |. -.+.|.+++.....     ........++...... ...+..++   ...|.|.+....
T Consensus        27 ~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~-----~~~~~~~~dgtys~~S-~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          27 KKKVSLTCMITGFYPADINVEWDSSEPSDYK-----NTPPVFDTDGSFFLYS-RLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             TTSCCEEEEEESCCSSCCEEESSSCCTTTEE-----EEEEECCSSCCCEEEE-EECCCSSCCHHHHCCEEEEEETT
T ss_pred             CCceEEEEEEEeeECCCcEEEEeeCCCCCcE-----EcccEECCCCcEEEEE-EEEECHHHhCCCCEEEEEEEeCC
Confidence            4567899999885 32 46899887642110     0111112233322222 23335544   456999998854

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.76  E-value=1.8  Score=21.72  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=30.3

Q ss_pred             EEEccCCcEEEEEEEcCCCccCCeEEEEEeEeCCccce-eeeEEEEE
Q psy8666          43 RVILPTGSLFFLRVVHGKKEQDGGVYWCLARNSVGTAV-SRNATLQV   88 (124)
Q Consensus        43 ~~~~~~~~~~~~~~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l~v   88 (124)
                      +....++++.+    ..+.+.|.|.|.-.+.+.-|... ...+.|.+
T Consensus        57 y~i~~nGtLkI----K~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI   99 (101)
T d1hnfa1          57 YKLFKNGTLKI----KHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI   99 (101)
T ss_dssp             EEECTTSCEEE----CSCCGGGCEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             EEEccCCcEEe----eeeeecCCCcEEEEEEcCCCcEeeeeeEEEEe
Confidence            45667888764    45589999999999999888752 33455554