Psyllid ID: psy8679

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MNQVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDELC
Secondary Structure (PSIPRED)
cHHHHHHHccccEEEEEccccccccEEEccEEEEcccccccccccccHHHHHHHHHHHHHccccHHccccccccccEEEEEccEEEEEcHHHHHHcccccccccccccEEEEEEEEccEEEEEEccHHHHcccccEEEEEccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEccHHHHHHcccccEEEEEcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccEcEEEEcccEEEccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEEcHHHHHHHHcccHHcEEEEEEEEccccccccEEEEEEHHHHHHHHHccEEEEcccccccEEcccHHHHccccEEccccccccEEEEEEccccccccEEEEccHHHHHccccccEEEEEEcccHHHHccHHccc
Coil and Loop (DISEMBL)
MNQVIHNIGSNVkllidrpdgtycfrEMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLlidrpdgtycfrEMRDRVFYVSEKILTLAEnfgpdhllalgtcfgkftksgkfrlHITALSylapyaqfkvwvkpqaeqqfLYGHNILKSGlaritentpkYQGVIVLnmndvplgfGVAAKStaeckladplaivgfnqsdigeyiRCEDELC
Flexible Loop (DISEMBL)
mnqvihnigsnvkllidrpDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLAdplaivgfnqsdigeYIRCEDELC
Low Complexity Region (SEG)
MNQVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDELC
Disordered region (IsUnstruct)
***VIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRC*****
Disordered Region (DISOPRED)
*****HNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL*
Disordered Region (DISEMBL)
MNQVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDELC
Disordered Region (DISPRO)
MNQVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCE***C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDELC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q6DFH9	180	60S ribosome subunit biog	N/A	N/A	0.723	0.888	0.718	7e-66
A4QND5	180	60S ribosome subunit biog	yes	N/A	0.723	0.888	0.712	8e-66
Q503P2	180	60S ribosome subunit biog	yes	N/A	0.723	0.888	0.718	2e-65
Q56P27	180	60S ribosome subunit biog	yes	N/A	0.723	0.888	0.7	8e-65
Q4T2X8	180	60S ribosome subunit biog	N/A	N/A	0.723	0.888	0.693	2e-64
Q5R9J1	180	60S ribosome subunit biog	yes	N/A	0.723	0.888	0.687	3e-64
Q9Y221	180	60S ribosome subunit biog	yes	N/A	0.723	0.888	0.687	3e-64
Q9CXK8	180	60S ribosome subunit biog	yes	N/A	0.723	0.888	0.687	1e-63
Q9WV50	180	60S ribosome subunit biog	yes	N/A	0.723	0.888	0.693	1e-63
Q1MTQ9	180	60S ribosome subunit biog	yes	N/A	0.723	0.888	0.556	2e-52

>sp|Q6DFH9|NIP7_XENLA 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 PE=2 SV=1

 Score =  249 bits (637), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 135/160 (84%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N+KLL+DRPDGTYCFR   DRV+YVSEKIL LA N   D L++ GTCFGKFTK+ KF
Sbjct: 20  IGENIKLLVDRPDGTYCFRLHNDRVYYVSEKILKLATNIARDKLVSFGTCFGKFTKTQKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLH+TAL YLAPYA++KVWVKP AEQ FLYG+++LKSGL RITENT +YQGV+V +M DV
Sbjct: 80  RLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADV 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST EC+  DP+AIV F+Q+D+GEYIR ED L
Sbjct: 140 PLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHEDTL 179

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.
Xenopus laevis (taxid: 8355)

>sp|A4QND5|NIP7_XENTR 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=nip7 PE=2 SV=1

 Score =  249 bits (637), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 136/160 (85%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N+KLL+DRPDGTYCFR   DRV+YVSE+IL LA N   D L++LGTCFGKFTK+ KF
Sbjct: 20  IGENIKLLVDRPDGTYCFRLHNDRVYYVSERILKLATNIARDKLVSLGTCFGKFTKTHKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLH+TAL YLAPYA++KVWVKP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80  RLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST EC+  DP+AIV F+Q+D+GEYIR ED L
Sbjct: 140 PLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHEDTL 179

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.

Xenopus tropicalis (taxid: 8364)

>sp|Q503P2|NIP7_DANRE 60S ribosome subunit biogenesis protein NIP7 homolog OS=Danio rerio GN=nip7 PE=2 SV=1

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 136/160 (85%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N+KLLIDRPDGTYCFR   DRV+Y+SEKIL LA N   D L+++GTCFGKFTK+ KF
Sbjct: 20  IGENIKLLIDRPDGTYCFRLHNDRVYYMSEKILKLATNVSRDKLVSVGTCFGKFTKTQKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLHITAL +LAPYA+FKVWVKP +EQ FLYG++I+KSGL RITENT KYQGV+V +M DV
Sbjct: 80  RLHITALDFLAPYAKFKVWVKPGSEQSFLYGNHIMKSGLGRITENTDKYQGVLVYSMADV 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAA++T EC+  DP+AIV F+Q+DIGEYIR ED L
Sbjct: 140 PLGFGVAARTTQECRKVDPMAIVVFHQADIGEYIRSEDTL 179

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.

Danio rerio (taxid: 7955)

>sp|Q56P27|NIP7_PIG 60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa GN=NIP7 PE=2 SV=1

 Score =  246 bits (628), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 112/160 (70%), Positives = 136/160 (85%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N++LL+DRPDGTYCFR   DRV+YVSEKIL LA N   D L++LGTCFGKFTK+ KF
Sbjct: 20  IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKILKLAANISGDKLMSLGTCFGKFTKTHKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLHITAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80  RLHITALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.

Sus scrofa (taxid: 9823)

>sp|Q4T2X8|NIP7_TETNG 60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis GN=nip7 PE=3 SV=1

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 135/160 (84%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N+KLL+DRPDGTYCFR   DRV+Y+SE+IL LA N     L+++GTCFGKFTK+ KF
Sbjct: 20  IGENIKLLVDRPDGTYCFRLHNDRVYYMSERILKLATNIARQKLVSVGTCFGKFTKTSKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLHITAL +LAPYA+FKVWVKP AEQ FLYG+++LKSGL RITENT +YQGV+V +M DV
Sbjct: 80  RLHITALDFLAPYAKFKVWVKPGAEQSFLYGNHVLKSGLGRITENTAQYQGVVVYSMADV 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST EC+  DP++IV F+Q+D+GE+IR ED L
Sbjct: 140 PLGFGVAAKSTQECRRVDPMSIVVFHQADVGEFIRNEDSL 179

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.

Tetraodon nigroviridis (taxid: 99883)

>sp|Q5R9J1|NIP7_PONAB 60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo abelii GN=NIP7 PE=2 SV=1

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 110/160 (68%), Positives = 136/160 (85%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N++LL+DRPDGTYCFR   DRV+YVSEKI+ LA N   D L++LGTCFGKFTK+ KF
Sbjct: 20  IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLH+TAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80  RLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.

Pongo abelii (taxid: 9601)

>sp|Q9Y221|NIP7_HUMAN 60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=1 SV=1

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 110/160 (68%), Positives = 136/160 (85%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N++LL+DRPDGTYCFR   DRV+YVSEKI+ LA N   D L++LGTCFGKFTK+ KF
Sbjct: 20  IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLH+TAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80  RLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.

Homo sapiens (taxid: 9606)

>sp|Q9CXK8|NIP7_MOUSE 60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus musculus GN=Nip7 PE=2 SV=1

 Score =  242 bits (618), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 110/160 (68%), Positives = 135/160 (84%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N++LL+DRPDGTYCFR   DRV+YVSE +L LA N   D L++LGTCFGKFTK+ KF
Sbjct: 20  IGENLQLLVDRPDGTYCFRLHNDRVYYVSEMMLKLAANISGDKLVSLGTCFGKFTKTHKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLH+TAL YLAPYA++KVWVKP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80  RLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.

Mus musculus (taxid: 10090)

>sp|Q9WV50|NIP7_RAT 60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1

 Score =  242 bits (617), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 135/160 (84%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N++LL+DRPDGTYCFR   DRV+YVSE IL LA N   D L++LGTCFGKFTK+ KF
Sbjct: 20  IGENLQLLVDRPDGTYCFRLHNDRVYYVSEMILKLAANISGDKLVSLGTCFGKFTKTHKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLH+TAL +LAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M DV
Sbjct: 80  RLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADV 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST +C+  DP+AIV F+Q+DIGEYIR E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYIRHEETL 179

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.

Rattus norvegicus (taxid: 10116)

>sp|Q1MTQ9|NIP7_SCHPO 60S ribosome subunit biogenesis protein nip7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nip7 PE=3 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 124/160 (77%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N+  LIDRPD  +CFR  +DRV+YVSE+ + +A +    +L++LG CFGKFTK+ KF
Sbjct: 20  IGKNITHLIDRPDDPHCFRLQKDRVYYVSERAMKMATSVARQNLMSLGICFGKFTKTNKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLHITAL Y+A YA++K+WVK   E  FLYG+++LK+ + RIT++TP++QGV++ +MND 
Sbjct: 80  RLHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGRITDDTPQHQGVVIYSMNDT 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGV A+ST E +  +P AIV F+Q+D+GEY+R ED L
Sbjct: 140 PLGFGVTARSTLELRRLEPTAIVAFHQADVGEYLRDEDTL 179

Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
332021101	180	60S ribosome subunit biogenesis protein	0.723	0.888	0.768	2e-69
307183980	180	60S ribosome subunit biogenesis protein	0.723	0.888	0.756	2e-69
357626358	180	putative nuclear import 7-like protein [	0.723	0.888	0.712	1e-68
251823887	180	nuclear import 7 [Acyrthosiphon pisum] g	0.723	0.888	0.718	7e-68
156546920	180	PREDICTED: 60S ribosome subunit biogenes	0.723	0.888	0.731	2e-67
157108943	180	hypothetical protein AaeL_AAEL005163 [Ae	0.723	0.888	0.756	5e-67
307199094	180	60S ribosome subunit biogenesis protein	0.723	0.888	0.737	8e-67
383864079	180	PREDICTED: 60S ribosome subunit biogenes	0.723	0.888	0.731	1e-66
347967641	180	AGAP002330-PA [Anopheles gambiae str. PE	0.723	0.888	0.731	1e-66
322799318	180	hypothetical protein SINV_06893 [Solenop	0.723	0.888	0.725	2e-66

>gi|332021101|gb|EGI61488.1| 60S ribosome subunit biogenesis protein NIP7-like protein [Acromyrmex echinatior]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/160 (76%), Positives = 143/160 (89%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG+NVK LIDRPDG YCFRE +DRV+YVSEKIL+LA N   DHLL+LGTCFGKFTKSGKF
Sbjct: 20  IGTNVKNLIDRPDGIYCFREKKDRVYYVSEKILSLANNVESDHLLSLGTCFGKFTKSGKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLHITAL YLAPYAQ K+WVKP AEQQFLYG++I+KSGLARITE T +YQGV++ +MND+
Sbjct: 80  RLHITALHYLAPYAQHKIWVKPSAEQQFLYGNHIMKSGLARITEGTNQYQGVVIFSMNDL 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKSTA+CK ADP+A++ F+Q+DIGEYIR ED L
Sbjct: 140 PLGFGVAAKSTADCKHADPVAVICFHQADIGEYIRSEDTL 179

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183980|gb|EFN70551.1| 60S ribosome subunit biogenesis protein NIP7-like protein [Camponotus floridanus]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 121/160 (75%), Positives = 141/160 (88%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           +GSNVK LIDRPDG YCFRE +DRV+YVSEKIL+LA   G DHLL++GTCFGKFTKSGKF
Sbjct: 20  MGSNVKNLIDRPDGVYCFRENKDRVYYVSEKILSLASTVGSDHLLSVGTCFGKFTKSGKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLH+TAL YLAPYAQ K+WVK  AEQQFLYGH+I+KSGLARITE T +YQGV+V +M+DV
Sbjct: 80  RLHVTALHYLAPYAQHKIWVKSSAEQQFLYGHHIMKSGLARITEGTSQYQGVVVFSMSDV 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKSTA+CK ADP+A + F+Q+DIGEY+R ED L
Sbjct: 140 PLGFGVAAKSTADCKHADPMATICFHQADIGEYLRSEDTL 179

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626358|gb|EHJ76476.1| putative nuclear import 7-like protein [Danaus plexippus]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 141/160 (88%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG NVKLLIDRPDGTYCFRE +DRV+Y+SEK+L LA+   P+HL++ GTCFGKFTK+ KF
Sbjct: 20  IGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLQLAQTVKPEHLISAGTCFGKFTKTNKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLHITAL+Y+APYA +K+WVKP AEQQFLYGH+++KSGL RITENTPK+QGV++  M+D+
Sbjct: 80  RLHITALTYIAPYATYKIWVKPSAEQQFLYGHHVIKSGLGRITENTPKHQGVVINTMSDI 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           P+GFGVAA+ST EC+ ADPLA + F+Q+DIGEYIR ED L
Sbjct: 140 PIGFGVAARSTTECRHADPLATIAFHQADIGEYIRSEDTL 179

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|251823887|ref|NP_001156512.1| nuclear import 7 [Acyrthosiphon pisum] gi|239792558|dbj|BAH72609.1| ACYPI003208 [Acyrthosiphon pisum]

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 141/160 (88%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IGSN+KLLIDR DG YCFRE +DRV+YVSEK+L +     PD+++++GTCFGKFTKSGKF
Sbjct: 20  IGSNIKLLIDRSDGKYCFREKKDRVYYVSEKVLNMGSMMNPDNIISIGTCFGKFTKSGKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           R+HIT+L YLAPYAQ K+W+KP AEQQFLYGHN+LKSGL RITE+T +YQGV+V +M+DV
Sbjct: 80  RIHITSLDYLAPYAQHKMWIKPAAEQQFLYGHNVLKSGLGRITESTTQYQGVLVFSMSDV 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAK+T ECK  DPL++V FNQ+DIGE+IRCED+L
Sbjct: 140 PLGFGVAAKNTTECKHTDPLSVVCFNQADIGEFIRCEDDL 179

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546920|ref|XP_001601662.1| PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Nasonia vitripennis]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 139/160 (86%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG NVK LIDRPDGTYCFRE +DRV+YVSEKIL LA    P++L+++G+C GKFTK+GKF
Sbjct: 20  IGDNVKFLIDRPDGTYCFREKKDRVYYVSEKILALANTVAPENLMSVGSCIGKFTKTGKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLHITAL YLAPYAQ K+WVK  AEQQFLYG+++ K+GL RITENT KYQGV+V +MND+
Sbjct: 80  RLHITALHYLAPYAQHKIWVKSSAEQQFLYGNHVNKAGLGRITENTTKYQGVVVYSMNDL 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAK TAECKLADP+A++ F+Q+DIGEYIR ED L
Sbjct: 140 PLGFGVAAKGTAECKLADPMAVIAFHQADIGEYIRSEDTL 179

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108943|ref|XP_001650454.1| hypothetical protein AaeL_AAEL005163 [Aedes aegypti] gi|108879175|gb|EAT43400.1| AAEL005163-PA [Aedes aegypti]

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 121/160 (75%), Positives = 137/160 (85%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG NVKLLIDRPDGTYCFREM  RV+YVSEKIL LAE    + L++LGTCFGKFTK  KF
Sbjct: 20  IGPNVKLLIDRPDGTYCFREMNSRVYYVSEKILKLAEGLKKNELVSLGTCFGKFTKGNKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
            LHITAL++LAPYAQ+K+WVKP  EQQFLYG++I K+GL RITENTP YQGVIV++MND 
Sbjct: 80  ILHITALTFLAPYAQYKIWVKPSTEQQFLYGNHITKTGLGRITENTPMYQGVIVMSMNDT 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKSTA+CKLADPL  V F+Q+DIGEYIR ED L
Sbjct: 140 PLGFGVAAKSTADCKLADPLVTVCFHQADIGEYIRSEDTL 179

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199094|gb|EFN79804.1| 60S ribosome subunit biogenesis protein NIP7-like protein [Harpegnathos saltator]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 118/160 (73%), Positives = 139/160 (86%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG+NVK LIDRPDG YCFRE +DRV+YVSEKIL+LA   G +HLL+LGTCFGKFTKSGKF
Sbjct: 20  IGNNVKNLIDRPDGIYCFREKKDRVYYVSEKILSLANTIGSEHLLSLGTCFGKFTKSGKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           +LHITAL YLAPYAQ K+W+K  AEQQFLYGH+I KSGLARITE T +YQGV++ ++ND+
Sbjct: 80  KLHITALHYLAPYAQHKIWLKHSAEQQFLYGHHITKSGLARITEGTSQYQGVVIFSINDL 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST +CK ADP+A + F+Q+DIGEYIR ED L
Sbjct: 140 PLGFGVAAKSTVDCKHADPVATICFHQADIGEYIRSEDTL 179

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864079|ref|XP_003707507.1| PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Megachile rotundata]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 136/160 (85%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG NVKLLIDRPDG YCFR  +DRV+YVSEKIL LA    PDHL++ GTCFGKFTKSGKF
Sbjct: 20  IGGNVKLLIDRPDGIYCFRLRKDRVYYVSEKILPLASMVNPDHLISFGTCFGKFTKSGKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLHITAL +LAPYAQFK+W+KP AEQQFLYGH++ K GL+RITENTP+YQGV++ + N++
Sbjct: 80  RLHITALYHLAPYAQFKIWLKPSAEQQFLYGHHVSKGGLSRITENTPQYQGVVIFSTNNI 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGV AKST +CK ADP A V F+Q+DIGEYIR ED L
Sbjct: 140 PLGFGVTAKSTMDCKYADPTATVCFHQADIGEYIRSEDSL 179

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967641|ref|XP_312639.4| AGAP002330-PA [Anopheles gambiae str. PEST] gi|333468366|gb|EAA08036.4| AGAP002330-PA [Anopheles gambiae str. PEST]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 140/160 (87%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG+NVKLLIDR DGTYCFREM+ RV+Y+SEKIL LAE    +H++++GTCFGKFTK  KF
Sbjct: 20  IGTNVKLLIDRSDGTYCFREMKSRVYYMSEKILKLAETVPKEHMVSVGTCFGKFTKGNKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
            LHITAL+YLAPYAQ+K+W+KP AEQQFLYG+N+ KSG+ RITENTP YQGVIV++M+DV
Sbjct: 80  ILHITALTYLAPYAQYKIWLKPAAEQQFLYGNNVAKSGMGRITENTPVYQGVIVMSMSDV 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST +CKLADPL  V F+Q+DIGEYIR E+ L
Sbjct: 140 PLGFGVAAKSTNDCKLADPLVTVCFHQADIGEYIRSEENL 179

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799318|gb|EFZ20706.1| hypothetical protein SINV_06893 [Solenopsis invicta]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/160 (72%), Positives = 138/160 (86%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG NVK L+DRPDG YCFRE +DRV+YVSEK+L+LA    PDHLL+ GTCFGKFTK+GKF
Sbjct: 20  IGPNVKNLVDRPDGIYCFREKKDRVYYVSEKLLSLASTVKPDHLLSFGTCFGKFTKTGKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLHITAL +LAPYAQ K+WVKP AEQQF+YG++I+KSGLARITE T +YQGV+V +MN++
Sbjct: 80  RLHITALHHLAPYAQHKIWVKPSAEQQFVYGNHIMKSGLARITEGTSQYQGVVVFSMNNL 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST +CK ADP A + FNQ+DIG+YIR ED L
Sbjct: 140 PLGFGVAAKSTTDCKHADPTATICFNQADIGQYIRSEDTL 179

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
ZFIN|ZDB-GENE-050522-256	180	nip7 "nuclear import 7 homolog	0.723	0.888	0.718	6.4e-60
UNIPROTKB|Q56P27	180	NIP7 "60S ribosome subunit bio	0.723	0.888	0.7	1.3e-59
UNIPROTKB|E1BC14	180	NIP7 "60S ribosome subunit bio	0.723	0.888	0.706	1.3e-59
UNIPROTKB|J9NWQ0	190	NIP7 "60S ribosome subunit bio	0.723	0.842	0.706	2.2e-59
UNIPROTKB|Q9Y221	180	NIP7 "60S ribosome subunit bio	0.723	0.888	0.687	3.5e-59
RGD|620069	180	Nip7 "NIP7, nucleolar pre-rRNA	0.723	0.888	0.693	1.5e-58
MGI|MGI:1913414	180	Nip7 "nuclear import 7 homolog	0.723	0.888	0.687	1.5e-58
FB|FBgn0039233	180	CG7006 [Drosophila melanogaste	0.723	0.888	0.693	4e-58
UNIPROTKB|E1C494	180	NIP7 "60S ribosome subunit bio	0.723	0.888	0.681	1.7e-57
WB|WBGene00016607	180	C43E11.9 [Caenorhabditis elega	0.723	0.888	0.606	3.6e-50

ZFIN|ZDB-GENE-050522-256 nip7 "nuclear import 7 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 115/160 (71%), Positives = 136/160 (85%)

Query:    61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
             IG N+KLLIDRPDGTYCFR   DRV+Y+SEKIL LA N   D L+++GTCFGKFTK+ KF
Sbjct:    20 IGENIKLLIDRPDGTYCFRLHNDRVYYMSEKILKLATNVSRDKLVSVGTCFGKFTKTQKF 79

Query:   121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
             RLHITAL +LAPYA+FKVWVKP +EQ FLYG++I+KSGL RITENT KYQGV+V +M DV
Sbjct:    80 RLHITALDFLAPYAKFKVWVKPGSEQSFLYGNHIMKSGLGRITENTDKYQGVLVYSMADV 139

Query:   181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
             PLGFGVAA++T EC+  DP+AIV F+Q+DIGEYIR ED L
Sbjct:   140 PLGFGVAARTTQECRKVDPMAIVVFHQADIGEYIRSEDTL 179

GO:0005634 "nucleus" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q56P27 NIP7 "60S ribosome subunit biogenesis protein NIP7 homolog" [Sus scrofa (taxid:9823)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 112/160 (70%), Positives = 136/160 (85%)

Query:    61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
             IG N++LL+DRPDGTYCFR   DRV+YVSEKIL LA N   D L++LGTCFGKFTK+ KF
Sbjct:    20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKILKLAANISGDKLMSLGTCFGKFTKTHKF 79

Query:   121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
             RLHITAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct:    80 RLHITALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139

Query:   181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
             PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R E+ L
Sbjct:   140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

UNIPROTKB|E1BC14 NIP7 "60S ribosome subunit biogenesis protein NIP7 homolog" [Bos taurus (taxid:9913)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 113/160 (70%), Positives = 136/160 (85%)

Query:    61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
             IG N++LL+DRPDGTYCFR   DRV+YVSEKIL LA N   D L++LGTCFGKFTK+ KF
Sbjct:    20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKILKLAANISGDKLVSLGTCFGKFTKTHKF 79

Query:   121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
             RLHITAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M DV
Sbjct:    80 RLHITALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADV 139

Query:   181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
             PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R E+ L
Sbjct:   140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

UNIPROTKB|J9NWQ0 NIP7 "60S ribosome subunit biogenesis protein NIP7 homolog" [Canis lupus familiaris (taxid:9615)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 113/160 (70%), Positives = 136/160 (85%)

Query:    61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
             IG N++LL+DRPDGTYCFR   DRV+YVSEKIL LA N   D L++LGTCFGKFTKS +F
Sbjct:    30 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKILKLAANISGDKLVSLGTCFGKFTKSHRF 89

Query:   121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
             RLHITAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M DV
Sbjct:    90 RLHITALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTCQYQGVVVYSMADV 149

Query:   181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
             PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R E+ L
Sbjct:   150 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 189

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

UNIPROTKB|Q9Y221 NIP7 "60S ribosome subunit biogenesis protein NIP7 homolog" [Homo sapiens (taxid:9606)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 110/160 (68%), Positives = 136/160 (85%)

Query:    61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
             IG N++LL+DRPDGTYCFR   DRV+YVSEKI+ LA N   D L++LGTCFGKFTK+ KF
Sbjct:    20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKF 79

Query:   121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
             RLH+TAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct:    80 RLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139

Query:   181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
             PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R E+ L
Sbjct:   140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

GO:0042255 "ribosome assembly" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

RGD|620069 Nip7 "NIP7, nucleolar pre-rRNA processing protein" [Rattus norvegicus (taxid:10116)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 111/160 (69%), Positives = 135/160 (84%)

Query:    61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
             IG N++LL+DRPDGTYCFR   DRV+YVSE IL LA N   D L++LGTCFGKFTK+ KF
Sbjct:    20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEMILKLAANISGDKLVSLGTCFGKFTKTHKF 79

Query:   121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
             RLH+TAL +LAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M DV
Sbjct:    80 RLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADV 139

Query:   181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
             PLGFGVAAKST +C+  DP+AIV F+Q+DIGEYIR E+ L
Sbjct:   140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYIRHEETL 179

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

MGI|MGI:1913414 Nip7 "nuclear import 7 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 110/160 (68%), Positives = 135/160 (84%)

Query:    61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
             IG N++LL+DRPDGTYCFR   DRV+YVSE +L LA N   D L++LGTCFGKFTK+ KF
Sbjct:    20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEMMLKLAANISGDKLVSLGTCFGKFTKTHKF 79

Query:   121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
             RLH+TAL YLAPYA++KVWVKP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct:    80 RLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139

Query:   181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
             PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R E+ L
Sbjct:   140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

FB|FBgn0039233 CG7006 [Drosophila melanogaster (taxid:7227)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 111/160 (69%), Positives = 133/160 (83%)

Query:    61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
             IG+NVK LIDRPDGTYCFRE +DRV+YVSE+IL L+E FG   L+ +GTCFGKF+K+ K 
Sbjct:    20 IGTNVKHLIDRPDGTYCFREHKDRVYYVSERILKLSECFGYKQLVCVGTCFGKFSKTNKL 79

Query:   121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
             + HITAL YLAPYAQ+KVWVKP  EQQFLYG++I K+GL RITEN  +YQGV+V +MND+
Sbjct:    80 KFHITALYYLAPYAQYKVWVKPSFEQQFLYGNHIPKTGLGRITENAGQYQGVVVYSMNDL 139

Query:   181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
             PLGFGV A+ST +CK ADP+  V F+QSDIGEYIR ED L
Sbjct:   140 PLGFGVLARSTTDCKTADPMTTVCFHQSDIGEYIRAEDTL 179

GO:0005634 "nucleus" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E1C494 NIP7 "60S ribosome subunit biogenesis protein NIP7 homolog" [Gallus gallus (taxid:9031)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 109/160 (68%), Positives = 135/160 (84%)

Query:    61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
             IG N++LL+DRPDGTYCFR  RDRV+YVSEK+L  A +   D L+ALGTCFGKFTK+ KF
Sbjct:    20 IGENIQLLVDRPDGTYCFRLHRDRVYYVSEKLLKGAASIPRDSLVALGTCFGKFTKTQKF 79

Query:   121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
             RL +TAL +LAPYA++KVWVKP +EQ FLYG+++LKSGL RITENT +YQGV+V +M DV
Sbjct:    80 RLSVTALDFLAPYAKYKVWVKPGSEQSFLYGNHVLKSGLGRITENTAQYQGVVVYSMADV 139

Query:   181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
             PLGFGVAAKST +C+  DP+AIV F+Q+D+GEY+R ED L
Sbjct:   140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADVGEYVRNEDTL 179

GO:0042255 "ribosome assembly" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

WB|WBGene00016607 C43E11.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 97/160 (60%), Positives = 122/160 (76%)

Query:    61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
             IG NV +LIDR DG YCFR  ++RV+Y SE ++  A     + LL+ GTC GKFTKS KF
Sbjct:    20 IGDNVSMLIDRNDGDYCFRNHKERVYYCSENLMRQAACIAREPLLSFGTCLGKFTKSKKF 79

Query:   121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
              L ITAL YLAPYA+FKVW+KP AEQQFLYG+NILKSG+AR+T+ TP + G++V +M DV
Sbjct:    80 HLQITALDYLAPYAKFKVWLKPNAEQQFLYGNNILKSGIARMTDGTPTHAGIVVYSMTDV 139

Query:   181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
             PLGFGV+AK T++ K ADP A+V  +Q D+GEY+R E  L
Sbjct:   140 PLGFGVSAKGTSDSKRADPTALVVLHQCDLGEYLRNESHL 179

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WV50	NIP7_RAT	No assigned EC number	0.6937	0.7239	0.8888	yes	N/A
Q9Y221	NIP7_HUMAN	No assigned EC number	0.6875	0.7239	0.8888	yes	N/A
Q56P27	NIP7_PIG	No assigned EC number	0.7	0.7239	0.8888	yes	N/A
A4QND5	NIP7_XENTR	No assigned EC number	0.7125	0.7239	0.8888	yes	N/A
Q6DFH9	NIP7_XENLA	No assigned EC number	0.7187	0.7239	0.8888	N/A	N/A
B0G104	NIP7_DICDI	No assigned EC number	0.5632	0.7149	0.8826	yes	N/A
Q9CXK8	NIP7_MOUSE	No assigned EC number	0.6875	0.7239	0.8888	yes	N/A
Q5R9J1	NIP7_PONAB	No assigned EC number	0.6875	0.7239	0.8888	yes	N/A
Q1MTQ9	NIP7_SCHPO	No assigned EC number	0.5562	0.7239	0.8888	yes	N/A
Q503P2	NIP7_DANRE	No assigned EC number	0.7187	0.7239	0.8888	yes	N/A
Q08962	NIP7_YEAST	No assigned EC number	0.5	0.7330	0.8950	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	221
COG1374	176	COG1374, NIP7, Protein involved in ribosomal bioge	7e-34
smart00359	76	smart00359, PUA, Putative RNA-binding Domain in Ps	5e-15
pfam03657	161	pfam03657, UPF0113, Uncharacterized protein family	9e-06

>gnl|CDD|224293 COG1374, NIP7, Protein involved in ribosomal biogenesis, contains PUA domain [Translation, ribosomal structure and biogenesis]

 Score =  119 bits (299), Expect = 7e-34
 Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 61  IGSNVKLLIDRP-DGTYCFR---EMRDR-VFYVSEKILTLAENFGPDHLLALGTCFGKFT 115
            G  ++  + +  +  + F    +++DR V+ V+E +  LAE+    +  +LGT FGK  
Sbjct: 20  EGDLIRKELSKYGELDHLFFHLLKVKDRDVYEVNEVVWKLAESIERKNPYSLGTFFGKRV 79

Query: 116 KSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVL 175
           K G FR H+ +L  LA  A  K +VK + E  FLYG N LK  +  I +  P+  GV V 
Sbjct: 80  KGGLFRKHVESLEELARIAIIKNYVKERGEMLFLYG-NDLKDHVKEIIDEIPENGGVFVF 138

Query: 176 NMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCED 218
           NMNDVPLG GV A S +E    D   I      D+GEY+R   
Sbjct: 139 NMNDVPLGIGVGALSPSE----DGRLIKN-ALKDVGEYLRRGG 176

Length = 176

>gnl|CDD|214635 smart00359, PUA, Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase

 Score = 66.9 bits (164), Expect = 5e-15
 Identities = 18/75 (24%), Positives = 34/75 (45%)

Query: 137 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKL 196
           KV V   AE+  L G ++L  G+ R+  +  +   V++++    PLG G+A  S+ E   
Sbjct: 2   KVVVDDGAEKAILNGASLLAPGVVRVDGDIKEGDVVVIVDEKGEPLGIGLANMSSEEIAR 61

Query: 197 ADPLAIVGFNQSDIG 211
                +    +  + 
Sbjct: 62  IKGKGLAVKVRRAVM 76

Length = 76

>gnl|CDD|217662 pfam03657, UPF0113, Uncharacterized protein family (UPF0113)

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 20/135 (14%)

Query: 85  VFYVSEKILTLAENFGPDHL---LALGTCFGKFTKSGKFRLHITALSYLAPYAQFK-VWV 140
           V+YV   +    E    +     L +G+  G+  +  +FRL +     L   +  K   +
Sbjct: 42  VYYVPWGLRRAVERL-LNPYSAGLNVGSIIGERGR--RFRLSLEGFFALLCNSPNKYARL 98

Query: 141 KPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPL 200
            P+AE+ FLYG ++ K  +A  T       G +++  N  P G G+           D L
Sbjct: 99  NPKAEKLFLYGRDVFKDSIASHTS-----FGALIVVSNGQPDGLGIG-------NSRDDL 146

Query: 201 AIVGFNQSDIGEYIR 215
            I+  N  D+G Y+R
Sbjct: 147 KIIK-NLKDLGWYLR 160

Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
KOG3492|consensus	180		100.0
PF03657	162	UPF0113: Uncharacterised protein family (UPF0113);	100.0
COG1374	176	NIP7 Protein involved in ribosomal biogenesis, con	100.0
KOG3492|consensus	180		99.9
PF03657	162	UPF0113: Uncharacterised protein family (UPF0113);	99.08
smart00359	77	PUA Putative RNA-binding Domain in PseudoUridine s	98.76
TIGR00451	107	unchar_dom_2 uncharacterized domain 2. This unchar	98.36
COG1374	176	NIP7 Protein involved in ribosomal biogenesis, con	98.27
PRK14560	160	putative RNA-binding protein; Provisional	98.16
TIGR03684	150	arCOG00985 arCOG04150 universal archaeal PUA-domai	98.01
PF01472	74	PUA: PUA domain; InterPro: IPR002478 The PUA (Pseu	97.89
PRK13794	479	hypothetical protein; Provisional	97.81
PRK13534	639	7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr	97.74
PRK13795	636	hypothetical protein; Provisional	97.41
COG5270	202	PUA domain (predicted RNA-binding domain) [Transla	96.77
COG1370	155	Prefoldin, molecular chaperone implicated in de no	96.67
TIGR00432	540	arcsn_tRNA_tgt tRNA-guanine transglycosylase, arch	96.63
PF13636	102	Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome	96.48
COG2016	161	Predicted RNA-binding protein (contains PUA domain	95.95
PRK04270	300	H/ACA RNA-protein complex component Cbf5p; Reviewe	95.29
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	94.33
PRK05429	372	gamma-glutamyl kinase; Provisional	93.74
TIGR00425	322	CBF5 rRNA pseudouridine synthase, putative. This f	93.53
COG3270	127	Uncharacterized conserved protein [Function unknow	93.48
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	91.68
COG1549	519	Queuine tRNA-ribosyltransferases, contain PUA doma	90.31
PRK08557	417	hypothetical protein; Provisional	86.59

>KOG3492|consensus

Probab=100.00  E-value=1.1e-90  Score=580.11  Aligned_cols=169  Identities=64%  Similarity=1.099  Sum_probs=165.7

Q ss_pred             ecceecccccccccccccCCCCeeEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcc
Q psy8679          53 ALGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAP  132 (221)
Q Consensus        53 slGtc~GyiG~ni~~li~~~d~~y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~  132 (221)
                      -+-++.+|||+|+..||||||++||||+||||||||||.++++|++|+|+||+|+||||||||||+|||||||||+||||
T Consensus        12 vfekla~yIG~Nv~~lidr~D~~~cfrlhkdRVyyvsEr~~k~a~~isr~~L~s~Gtc~GKFTKt~kfrlhitaL~~La~   91 (180)
T KOG3492|consen   12 VFEKLAKYIGDNVSHLIDRPDGTYCFRLHKDRVYYVSERIMKLAACISRKNLVSLGTCFGKFTKTGKFRLHITALDYLAP   91 (180)
T ss_pred             HHHHHHHHHhhhhheeecCCCCceeeEeeCceEEeehHHHHHHHhhhcccceeEEeEEEeeeeccceEEEeeeehhhhhh
Confidence            35578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEeccccee
Q psy8679         133 YAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGE  212 (221)
Q Consensus       133 ~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~qaD~Ge  212 (221)
                      ||+|||||||+|||+|||||||+|||++||||++|+|+|||||||+|+|||||++||||++||++||+++||+||||+||
T Consensus        92 ~Ak~KvWiKp~~Em~flYGNhvlKs~vgRitd~~p~~~GVvVysm~DvPLGFGv~Akst~d~r~~dp~aiv~~hQaDiGE  171 (180)
T KOG3492|consen   92 YAKYKVWIKPNAEMQFLYGNHVLKSGVGRITDGIPQHQGVVVYSMNDVPLGFGVTAKSTQDCRKADPTAIVVLHQADIGE  171 (180)
T ss_pred             hhheeEEeccCcccceeecccchhcccceecCCCCCcceEEEEeccCCccccceeecCcccccccCCcEEEEEEecchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccccC
Q psy8679         213 YIRCEDELC  221 (221)
Q Consensus       213 YLR~E~~l~  221 (221)
                      |||+||+|.
T Consensus       172 YlR~E~~l~  180 (180)
T KOG3492|consen  172 YLRNEDTLF  180 (180)
T ss_pred             HhhcccccC
Confidence            999999973

>PF03657 UPF0113: Uncharacterised protein family (UPF0113); InterPro: IPR005155 This entry represents PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain containing proteins such as the ribosomal biogenesis factor NIP7 [, ]

Probab=100.00  E-value=3.1e-58  Score=385.26  Aligned_cols=147  Identities=60%  Similarity=0.988  Sum_probs=126.8

Q ss_pred             cceecccccccccccccCCCCeeEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecc-eEEEEeeehhhhcc
Q psy8679          54 LGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSG-KFRLHITALSYLAP  132 (221)
Q Consensus        54 lGtc~GyiG~ni~~li~~~d~~y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~-kFrl~ItaL~~La~  132 (221)
                      +..+.+|.+++   ++++. ..+|||+|++||||||+++++.|++  +++++|+|||+|+|||++ ||+|||||+++||+
T Consensus        15 ~~kL~~yg~~~---~l~~~-~~~~~~~~~~~Vyyvs~~l~~~~~~--~~~~~s~G~~~G~f~k~~~kf~l~i~~l~~la~   88 (162)
T PF03657_consen   15 FEKLSKYGGNN---LLDHF-DFYVFRLHKDRVYYVSEELMKLASN--RPNLYSLGTCLGKFTKKGKKFRLHITALDYLAP   88 (162)
T ss_dssp             HHHHHCCCCGH---CCEET-EEEEEECCTCEEEEEEHHHHCCCTT--CHHHHCCSEEEEEE-TTTSEEEEEGHHHHCCCC
T ss_pred             HHHHHHhcchh---hcccc-cceeeeeecceEEEECHHHHHHHhC--CCccceeceEEEEEecCCccceeeHHHHHHhhh
Confidence            34566774444   66655 5799999999999999999999998  899999999999999854 99999999999999


Q ss_pred             cCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEeccccee
Q psy8679         133 YAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGE  212 (221)
Q Consensus       133 ~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~qaD~Ge  212 (221)
                      ||++||||||+|||+|||||||+||||+||||++|+|  ||||||||+|||||        +++.+|++++|+||+|+||
T Consensus        89 ~~~~kvwvk~~~e~~FLYGndV~ks~i~~i~e~~~~~--VvV~n~~d~~LGfG--------~~~~~~~~~vv~~~~DiGe  158 (162)
T PF03657_consen   89 YAKNKVWVKPKAEMLFLYGNDVLKSSIGRITEDTPQN--VVVYNMNDVPLGFG--------CRKSDPDGKVVKNQADIGE  158 (162)
T ss_dssp             C-SSEEEE-HHHHHHHCTT--EEGGGEEEEETTS-TC--EEEEETTS-EEEEE--------ECSTCHCCCCCECCEEGGG
T ss_pred             ccceeEEECCCceEEeeecCCchHhhcEEecCCCCce--EEEEeCCCCeEEEE--------EeccCCCCEEEEEcCccee
Confidence            9999999999999999999999999999999999999  99999999999999        6688999999999999999


Q ss_pred             eecc
Q psy8679         213 YIRC  216 (221)
Q Consensus       213 YLR~  216 (221)
                      |||+
T Consensus       159 YLR~  162 (162)
T PF03657_consen  159 YLRE  162 (162)
T ss_dssp             T-S-
T ss_pred             eecC
Confidence            9995

PUA domains are predicted to bind RNA molecules with complex folded structures []. NIP7 is required for efficient 60S ribosome subunit biogenesis and has been shown to interact with another essential nucleolar protein, Nop8p, and the exosome subunit Rrp43p. These three proteins are required for 60S subunit synthesis and may be part of a dynamic complex involved in this process.; PDB: 1T5Y_A 1SQW_A 2P38_A.

>COG1374 NIP7 Protein involved in ribosomal biogenesis, contains PUA domain [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-44  Score=306.61  Aligned_cols=157  Identities=38%  Similarity=0.519  Sum_probs=149.2

Q ss_pred             eecccccccccccccCC-CCeeEEE--ee-CcE-EEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhh
Q psy8679          56 TCFGNIGSNVKLLIDRP-DGTYCFR--EM-RDR-VFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYL  130 (221)
Q Consensus        56 tc~GyiG~ni~~li~~~-d~~y~fr--lh-k~r-VyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~L  130 (221)
                      .+..|++++|..+++.. +..++|+  ++ ++| ||+|++...+.|+.++|+|++|+|||||+||++++||+|+++|++|
T Consensus        15 kl~~~e~~lI~~~l~~~g~~~~~f~~~~~~~~r~v~~V~~~~~~l~~~i~r~np~~~G~~~g~~~~~~~fR~~~~~l~~l   94 (176)
T COG1374          15 KLSSWEGDLIRKELSKYGELDHLFFHLLKVKDRDVYEVNEVVWKLAESIERKNPYSLGTFFGKRVKGGLFRKHVESLEEL   94 (176)
T ss_pred             cchhHHHHHHHHHHHhccccchhhhhheeeccccEEEEeeehhhhhhcccccCcceeceeecccccCCeeeeehhhhHHH
Confidence            45678999999999877 5567777  66 888 9999999999999999999999999999999999999999999999


Q ss_pred             cccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEecccc
Q psy8679         131 APYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDI  210 (221)
Q Consensus       131 a~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~qaD~  210 (221)
                      |+++.+|+||+|+|||+|||||| +|+|+.++++.+|++++|+||||||+|||||+++.|+++-+++-|++     |+|+
T Consensus        95 a~~~~~k~~v~~~~e~~FLYg~~-lkd~~~e~~~~~~~~~~v~V~~~nd~~lgiGvg~~s~~ed~~~i~~~-----l~D~  168 (176)
T COG1374          95 ARIAIIKNYVKERGEMLFLYGND-LKDHVKEIIDEIPENGGVFVFNMNDVPLGIGVGALSPSEDGRLIKNA-----LKDV  168 (176)
T ss_pred             HHHhheeeeeccCceeEEEeccc-cchhhhhhccccCCcceEEEEEcCCCceEEEecccCchhhccccccc-----cchh
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999987     9999


Q ss_pred             eeeecccc
Q psy8679         211 GEYIRCED  218 (221)
Q Consensus       211 GeYLR~E~  218 (221)
                      |||||+|+
T Consensus       169 GeYLRr~~  176 (176)
T COG1374         169 GEYLRRGG  176 (176)
T ss_pred             hhhhhcCC
Confidence            99999985

>KOG3492|consensus

Probab=99.90  E-value=5.4e-25  Score=185.01  Aligned_cols=77  Identities=47%  Similarity=0.820  Sum_probs=68.8

Q ss_pred             cccccccccccccccCCCCceeEEEeCCeEEEEcHHHHhhhcccCcccceecceecccccccccccccCCCCeeEEEeeC
Q psy8679           3 QVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGTYCFREMR   82 (221)
Q Consensus         3 ~~~~yiG~n~~~li~r~d~~y~FRlhk~RVyYvse~i~k~At~i~r~~L~slGtc~GyiG~ni~~li~~~d~~y~frlhk   82 (221)
                      .+|.|||+|+++||||||++|||||||||||||||.+||+|++|+|+||+|+|||+|-.-+.           .-||||=
T Consensus        15 kla~yIG~Nv~~lidr~D~~~cfrlhkdRVyyvsEr~~k~a~~isr~~L~s~Gtc~GKFTKt-----------~kfrlhi   83 (180)
T KOG3492|consen   15 KLAKYIGDNVSHLIDRPDGTYCFRLHKDRVYYVSERIMKLAACISRKNLVSLGTCFGKFTKT-----------GKFRLHI   83 (180)
T ss_pred             HHHHHHhhhhheeecCCCCceeeEeeCceEEeehHHHHHHHhhhcccceeEEeEEEeeeecc-----------ceEEEee
Confidence            47899999999999999999999999999999999999999999999999999999866433           4799997


Q ss_pred             cEEEEEcH
Q psy8679          83 DRVFYVSE   90 (221)
Q Consensus        83 ~rVyYvs~   90 (221)
                      .-..|++.
T Consensus        84 taL~~La~   91 (180)
T KOG3492|consen   84 TALDYLAP   91 (180)
T ss_pred             eehhhhhh
Confidence            77666543

>PF03657 UPF0113: Uncharacterised protein family (UPF0113); InterPro: IPR005155 This entry represents PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain containing proteins such as the ribosomal biogenesis factor NIP7 [, ]

Probab=99.08  E-value=4.5e-11  Score=100.79  Aligned_cols=56  Identities=43%  Similarity=0.773  Sum_probs=46.4

Q ss_pred             cccccccccccccccCCCCceeEEEeCCeEEEEcHHHHhhhcccCcccceecceeccccccc
Q psy8679           3 QVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSN   64 (221)
Q Consensus         3 ~~~~yiG~n~~~li~r~d~~y~FRlhk~RVyYvse~i~k~At~i~r~~L~slGtc~GyiG~n   64 (221)
                      .+++| |.|.  ++++.+ .+|||+|++|||||||++++.|++  +++++|+|||+|-+|++
T Consensus        17 kL~~y-g~~~--~l~~~~-~~~~~~~~~~Vyyvs~~l~~~~~~--~~~~~s~G~~~G~f~k~   72 (162)
T PF03657_consen   17 KLSKY-GGNN--LLDHFD-FYVFRLHKDRVYYVSEELMKLASN--RPNLYSLGTCLGKFTKK   72 (162)
T ss_dssp             HHHCC-CCGH--CCEETE-EEEEECCTCEEEEEEHHHHCCCTT--CHHHHCCSEEEEEE-TT
T ss_pred             HHHHh-cchh--hccccc-ceeeeeecceEEEECHHHHHHHhC--CCccceeceEEEEEecC
Confidence            35667 4444  666554 699999999999999999999999  99999999999999875

PUA domains are predicted to bind RNA molecules with complex folded structures []. NIP7 is required for efficient 60S ribosome subunit biogenesis and has been shown to interact with another essential nucleolar protein, Nop8p, and the exosome subunit Rrp43p. These three proteins are required for 60S subunit synthesis and may be part of a dynamic complex involved in this process.; PDB: 1T5Y_A 1SQW_A 2P38_A.

>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase

Probab=98.76  E-value=2e-08  Score=71.68  Aligned_cols=73  Identities=23%  Similarity=0.299  Sum_probs=66.9

Q ss_pred             ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcC-CCcEEEEecc
Q psy8679         136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLAD-PLAIVGFNQS  208 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~d-p~~ivv~~qa  208 (221)
                      .+++|++++++.+++|..|+.++|.+++.++...+-|.|++.++.|||.|.+..++.++.++. +.++++..+.
T Consensus         1 ~~i~v~~~~~~~i~~g~~v~~~~v~~~~~~~~~g~~V~v~~~~g~~vg~G~~~~~s~~~~~~~~~~g~~v~~~~   74 (77)
T smart00359        1 GKVVVDDGAVKAILNGASLLAPGVVRVDGGIKEGDVVVIVDEKGEPLGIGLANMSSEEMARIKGEKGLAVKVRR   74 (77)
T ss_pred             CEEEEchhHHHHHHcCCCcccceeEEEeCCcCCCCEEEEEcCCCCEEEEEEEeCCHHHHHHHhccCceEEEEEE
Confidence            379999999999999999999999999999999999999999999999999999999999987 6677776554

>TIGR00451 unchar_dom_2 uncharacterized domain 2

Probab=98.36  E-value=1.3e-06  Score=67.82  Aligned_cols=90  Identities=23%  Similarity=0.249  Sum_probs=76.7

Q ss_pred             eeecceEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecC-CCeeeEEeeeechh
Q psy8679         114 FTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMN-DVPLGFGVAAKSTA  192 (221)
Q Consensus       114 FtKs~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~n-d~pLGFGv~akst~  192 (221)
                      |...++|.+++.++..+-. ...+|+|++++...-+.|.+++..+|...++++.+++-|.|++.+ +.|+|.|++..|+.
T Consensus        10 ~~~~~~~~ptl~~~~~~~~-~~~~v~vd~~a~~~l~~Ga~L~~pGV~~~~~~~~~gd~V~I~~~~~~~~iavG~a~~~s~   88 (107)
T TIGR00451        10 FIYDDKVIPSLKGALKLME-DKKIVVVDNGAVKFLKNGADVMRPGIVDADEDIKEGDDVVVVDENKDRPLAVGIALMSGE   88 (107)
T ss_pred             EEECCeEcccHHHHHhChh-hCCEEEEChhHHHHHHCCccccCCeeEeCCCCcCCCCEEEEEECCCCeEEEEEEEecCHH
Confidence            3345689999988865544 368999999988766799999999999999999999999999987 89999999999999


Q ss_pred             HhhhcCCCcEEEE
Q psy8679         193 ECKLADPLAIVGF  205 (221)
Q Consensus       193 ~~~~~dp~~ivv~  205 (221)
                      |++..+ .+++|.
T Consensus        89 e~~~~~-~G~~v~  100 (107)
T TIGR00451        89 EMKEMD-KGKAVK  100 (107)
T ss_pred             HHHhcC-CCeEEE
Confidence            999884 466654

This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.

>COG1374 NIP7 Protein involved in ribosomal biogenesis, contains PUA domain [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=2.8e-07  Score=79.19  Aligned_cols=58  Identities=26%  Similarity=0.350  Sum_probs=53.7

Q ss_pred             ccccccccccccccccCC-CCceeEE--Ee-CCe-EEEEcHHHHhhhcccCcccceecceecc
Q psy8679           2 NQVIHNIGSNVKLLIDRP-DGTYCFR--EM-RDR-VFYVSEKILTLAENFGPDHLLALGTCFG   59 (221)
Q Consensus         2 ~~~~~yiG~n~~~li~r~-d~~y~FR--lh-k~R-VyYvse~i~k~At~i~r~~L~slGtc~G   59 (221)
                      .+.++++|++|..+++.. +..++|+  ++ ++| ||+|++...++|++|+|.|+.|+|||+|
T Consensus        14 rkl~~~e~~lI~~~l~~~g~~~~~f~~~~~~~~r~v~~V~~~~~~l~~~i~r~np~~~G~~~g   76 (176)
T COG1374          14 RKLSSWEGDLIRKELSKYGELDHLFFHLLKVKDRDVYEVNEVVWKLAESIERKNPYSLGTFFG   76 (176)
T ss_pred             ccchhHHHHHHHHHHHhccccchhhhhheeeccccEEEEeeehhhhhhcccccCcceeceeec
Confidence            467899999999999988 6678998  77 999 9999999999999999999999999998

>PRK14560 putative RNA-binding protein; Provisional

Probab=98.16  E-value=5.1e-06  Score=69.02  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=77.7

Q ss_pred             ecceEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecC-CCeeeEEeeeechhHh
Q psy8679         116 KSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMN-DVPLGFGVAAKSTAEC  194 (221)
Q Consensus       116 Ks~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~n-d~pLGFGv~akst~~~  194 (221)
                      .++.|.+++.++..+ |....+|.|.+.+....+.|.+++..||..+++++.+++-|+|++.+ +.|+|.|.+.-|+.++
T Consensus        58 ~d~~~~Ptl~~~~~~-~~~~~~v~Vd~~a~~~i~~Ga~lm~pGV~~~~~~~~~Gd~V~I~~~~~~~~vavG~~~~s~~ei  136 (160)
T PRK14560         58 VDDELFPTLRGALKL-KPEKRRVVVDAGAVKFVSNGADVMAPGIVEADEDIKEGDIVFVVEETHGKPLAVGRALMDGDEM  136 (160)
T ss_pred             eCCcccccHHHHHhC-CccCCEEEEeccHHHHHHCCCceecCeeeeCCCCCCCCCEEEEEECCCCeEEEEEEEeeCHHHH
Confidence            367899999998877 66678999999988888899999999999999999999999999987 9999999999999999


Q ss_pred             hhcCCCcEEEE
Q psy8679         195 KLADPLAIVGF  205 (221)
Q Consensus       195 ~~~dp~~ivv~  205 (221)
                      +..+ .|++|.
T Consensus       137 ~~~~-kG~~v~  146 (160)
T PRK14560        137 VEEK-KGKAVK  146 (160)
T ss_pred             hhcC-CceEEE
Confidence            8644 466654

>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein

Probab=98.01  E-value=1.5e-05  Score=65.48  Aligned_cols=91  Identities=22%  Similarity=0.277  Sum_probs=78.8

Q ss_pred             eeecceEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecC-CCeeeEEeeeechh
Q psy8679         114 FTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMN-DVPLGFGVAAKSTA  192 (221)
Q Consensus       114 FtKs~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~n-d~pLGFGv~akst~  192 (221)
                      |..++.|.+++.++..+.+ ...+|.|++.+...-+-|.|++..+|..+++++..++-|+|++.+ +.|+|.|.+.-|++
T Consensus        49 ~~~~~~~~Ptl~~~~~~~~-~~~~v~Vd~~a~~~l~~Ga~lm~pGV~~~~~~~~~Gd~V~I~~~~~~~~vavG~a~~ss~  127 (150)
T TIGR03684        49 FEKDGRLIPTLYLLLELNP-DKNRVVVDEGAVKFIINGADIMAPGIVSADPSIKEGDIVFVVDETHRKPLAVGIALMDAE  127 (150)
T ss_pred             EEeCCcccccHHHHHhCCc-cCCEEEECccHHHHHhcCcccccCceecCCCCCCCCCEEEEEECCCCeEEEEEEEeeCHH
Confidence            5557899999988876643 578999999988877899999999999999999999999999988 99999999999999


Q ss_pred             HhhhcCCCcEEEEe
Q psy8679         193 ECKLADPLAIVGFN  206 (221)
Q Consensus       193 ~~~~~dp~~ivv~~  206 (221)
                      +++... .|++|.+
T Consensus       128 ei~~~~-kG~av~~  140 (150)
T TIGR03684       128 EMEEEK-KGKAVKN  140 (150)
T ss_pred             HHhhcC-CCeEEEE
Confidence            998654 4666543

This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).

>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []

Probab=97.89  E-value=2.5e-05  Score=57.17  Aligned_cols=67  Identities=19%  Similarity=0.246  Sum_probs=59.8

Q ss_pred             eEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEE
Q psy8679         137 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVG  204 (221)
Q Consensus       137 Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv  204 (221)
                      +|||+.++....+.|.+++-.||.++.+++++.+-|.|++.++.++|.|.+..|..++.++.. +..+
T Consensus         2 ~vvVd~~a~~~i~~Ga~L~~~GV~~~~~~f~~gd~V~i~~~~g~~ia~G~a~~ss~ei~~~~~-g~~~   68 (74)
T PF01472_consen    2 RVVVDDGAVEAILNGASLFAPGVVEVDGDFRKGDEVAIVDEDGEVIAVGRANMSSEEIKKMKK-GKAV   68 (74)
T ss_dssp             EEEE-HHHHHHHHTTSEEEGGGEEEEETT--TTSEEEEEETTSSEEEEEEESSTHHHHHHHSS-SEEE
T ss_pred             EEEECccHHHHHHcCCCcchHHhEECCCCcCCCCEEEEEcCCCeEEEEEEEecCHHHHHHHcC-CcEe
Confidence            689999999999999999999999999999999999999999999999999999999999984 4544

PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....

>PRK13794 hypothetical protein; Provisional

Probab=97.81  E-value=0.0001  Score=71.12  Aligned_cols=108  Identities=22%  Similarity=0.273  Sum_probs=83.5

Q ss_pred             CCeeeeeeeeeeee---ecce--EEEEeeehhhhcccC-cceEEEccCccceee-cccccccccceeecccCCCcceEEE
Q psy8679         102 DHLLALGTCFGKFT---KSGK--FRLHITALSYLAPYA-QFKVWVKPQAEQQFL-YGHNILKSGLARITENTPKYQGVIV  174 (221)
Q Consensus       102 ~~L~S~Gtc~GkFt---Ks~k--Frl~ItaL~~La~~a-k~Kvwvk~~gE~~FL-YGn~V~Ks~l~rite~~~~~~GVvV  174 (221)
                      ++++.=|..+|-+.   ..++  |.|++.+...|-+.+ +.+|.|++.+...-+ .|.+|+..||..+++++..++-|+|
T Consensus        85 ~eVi~dg~~l~~l~~~~~~~~w~~~l~~~ga~~l~~~~~~~~V~Vd~ga~~~v~~~G~~v~~~GV~~~~~~i~~gd~V~I  164 (479)
T PRK13794         85 EEIIVDGAVVGIIRYNEKKHRWKIIPRPEGARRLIPTAKKKFIVVKDDVPKFIRNKGASVLRPGVAEASEDIEEGDDVII  164 (479)
T ss_pred             eEEEECCEEEEEEEeccccceeEEecCHHHHHHhhhccCCcEEEECccHHHHHHhCCCeecCCceEEecCCcCCCCEEEE
Confidence            45566688888732   3455  555666666665543 578999976666555 8999999999999999999999999


Q ss_pred             EecCCCeeeEEeeeechhHhhhcCCCcEEEEeccc
Q psy8679         175 LNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSD  209 (221)
Q Consensus       175 ~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~qaD  209 (221)
                      .+.+|.++|.|++.-|+.+++..+..-+|=.+.++
T Consensus       165 v~~~g~~iavG~a~~s~~ei~~~~~G~~Vkvr~~~  199 (479)
T PRK13794        165 LDENGDVVGVGRARMSYEEIVNMEKGMVVKVRKSE  199 (479)
T ss_pred             EcCCCcEEEEEEeecCHHHHHhccCceEEEEEecc
Confidence            99999999999999999999998775443333434

>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional

Probab=97.74  E-value=0.00014  Score=72.71  Aligned_cols=103  Identities=19%  Similarity=0.259  Sum_probs=87.6

Q ss_pred             Ceeeeeeeeeeee-ecceEEEEeeehhhhc---ccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecC
Q psy8679         103 HLLALGTCFGKFT-KSGKFRLHITALSYLA---PYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMN  178 (221)
Q Consensus       103 ~L~S~Gtc~GkFt-Ks~kFrl~ItaL~~La---~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~n  178 (221)
                      +++.=|..++-+. ..|.|.|++.|...|-   ++.+++|.|++.++..-.=|.+|+..||...++++..++-|+|.+.+
T Consensus       527 ~I~vdg~~l~~l~~~dg~~~pt~~GA~~l~~~~~~~~~~V~Vd~~a~~~v~~G~~v~apgVv~~d~~ir~gDeV~Vv~e~  606 (639)
T PRK13534        527 QVLDKGEILATMRANDGFLILSKEGAKRLHEKLPFPKYRVVVDKESEPFARKGKSVFAKFVIDCDEEIRPYDEVLVVNED  606 (639)
T ss_pred             EEEECCEEEEEEEecCCEEEEcHHHHHHHHhccCCCCcEEEECCcchhhhhCCCcccCCcceecCCCCCCCCEEEEEecC
Confidence            3444488888776 6789999999988884   34468999998888877789999999999999999999999999999


Q ss_pred             CCeeeEEeeeechhHhhhcCCCcEEEEe
Q psy8679         179 DVPLGFGVAAKSTAECKLADPLAIVGFN  206 (221)
Q Consensus       179 d~pLGFGv~akst~~~~~~dp~~ivv~~  206 (221)
                      |.|||.|++.-|..|+...+. |++|..
T Consensus       607 ~~~lavG~A~~~~~em~~~~~-G~avkv  633 (639)
T PRK13534        607 DELLAYGKALLNGRELMEFNY-GLAVKV  633 (639)
T ss_pred             CcEEEEEEEecCHHHHhhcCC-ceEEEE
Confidence            999999999999999998755 566643

>PRK13795 hypothetical protein; Provisional

Probab=97.41  E-value=0.00051  Score=68.39  Aligned_cols=101  Identities=18%  Similarity=0.165  Sum_probs=81.7

Q ss_pred             Ceeeeeeeeee--ee---ecceEEEEeeehhhhc-ccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEe
Q psy8679         103 HLLALGTCFGK--FT---KSGKFRLHITALSYLA-PYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLN  176 (221)
Q Consensus       103 ~L~S~Gtc~Gk--Ft---Ks~kFrl~ItaL~~La-~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n  176 (221)
                      .++.=|..+|-  |.   ...+|.|++.|...|. +..+.+|.|+..+...-.-|.+|+..||..+++++..++-|+|.+
T Consensus        88 ~vivdg~~~~~l~fd~~~~~~~~~p~l~ga~~l~~~~~~~~VvVd~ga~~~v~~Ga~l~~~GI~~~~~~i~~gd~V~I~~  167 (636)
T PRK13795         88 EIIVDGRVIGHLRFDLLELRWRFEPRLEGAKRLLKKRLKKWVIVDKGALEPIKNGKNVLAPGVVEADLDIKKGDEVVVVT  167 (636)
T ss_pred             EEEECCEEEEEEEeecccccceEecCHHHHHHHhhccCCcEEEEcccHHHHHHcCCcccCCceEEEeCCCCCCCEEEEEe
Confidence            34445677773  32   2336778887666664 466799999988877777999999999999999999999999999


Q ss_pred             cCCCeeeEEeeeechhHhhhcCCCcEEE
Q psy8679         177 MNDVPLGFGVAAKSTAECKLADPLAIVG  204 (221)
Q Consensus       177 ~nd~pLGFGv~akst~~~~~~dp~~ivv  204 (221)
                      .++.++|.|++.-|+.+++..+.. ++|
T Consensus       168 e~g~~vavG~a~~s~~e~~~~~kG-~~V  194 (636)
T PRK13795        168 EDGEVVGVGRAKMDGDDMIKRFRG-RAV  194 (636)
T ss_pred             CCCCEEEEEEeccCHHHHhhccCC-eEE
Confidence            999999999999999999988664 444

>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]

Probab=96.77  E-value=0.002  Score=56.49  Aligned_cols=97  Identities=24%  Similarity=0.315  Sum_probs=85.4

Q ss_pred             CCeeeeeeeeeee--e--ecc-eEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEe
Q psy8679         102 DHLLALGTCFGKF--T--KSG-KFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLN  176 (221)
Q Consensus       102 ~~L~S~Gtc~GkF--t--Ks~-kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n  176 (221)
                      +.++--|-.||-.  .  |-+ +|+|..++.-.|-.--+.=+||+-+++..-.-|.||+.-+|...++++++++-|+|.+
T Consensus        90 dEIvvdG~i~g~i~fd~~k~rW~~~lk~eGAk~L~e~~~k~~~i~~~~~E~~~Ng~nV~~~gV~e~~~~i~~~d~viVv~  169 (202)
T COG5270          90 DEIVVDGFIFGIIRFDLRKLRWRFGLKLEGAKLLLEKGKKGRKIDRGAVEPVKNGKNVLPPGVIEAEDSIERGDEVIVVS  169 (202)
T ss_pred             ceEEecceEEEEEEecchhcccccccChHHHHHHHHhcCccEEEEcccchhhhccCcccCCceeeccCCcccCCeEEEEe
Confidence            5788888888843  2  222 8999999988887766778999999999999999999999999999999999999999


Q ss_pred             cCCCeeeEEeeeechhHhhhcC
Q psy8679         177 MNDVPLGFGVAAKSTAECKLAD  198 (221)
Q Consensus       177 ~nd~pLGFGv~akst~~~~~~d  198 (221)
                      .|+.+.|+|.+.+|..+..+-.
T Consensus       170 ~ng~~vGVg~a~~~~~~~in~~  191 (202)
T COG5270         170 ENGRVVGVGIAKKSYEELINPE  191 (202)
T ss_pred             cCCEEEEEEEEecCHHHhcCcc
Confidence            9999999999999999887765

>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.0057  Score=51.96  Aligned_cols=90  Identities=23%  Similarity=0.266  Sum_probs=79.0

Q ss_pred             ecceEEEEeeehhhhcc---cCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechh
Q psy8679         116 KSGKFRLHITALSYLAP---YAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTA  192 (221)
Q Consensus       116 Ks~kFrl~ItaL~~La~---~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~  192 (221)
                      .+|-|.|++++-..|-.   +.+++|.|...+|---=-|++||-.++....|++-.++=|+|.|.+|..|+-|.+.-|..
T Consensus        58 ~DG~~tL~~~Ga~~L~~~l~~P~~RVvV~~E~e~f~r~Gk~VFaKfVi~~D~~iR~~dEvlVVne~d~LlAvGra~ls~~  137 (155)
T COG1370          58 NDGLFTLTIEGARRLHRALPFPRMRVVVSDEAEEFVRKGKSVFAKFVIDVDEEIRAGDEVLVVNEDDELLAVGRALLSGA  137 (155)
T ss_pred             CCceEEechhhhHHHHhcCCCCceEEEeccccHHHHHhccchhhhheeccCcccCCCCeEEEECCCCcEEEeeeEeecHH
Confidence            46778889988777754   777999999888876679999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEEe
Q psy8679         193 ECKLADPLAIVGFN  206 (221)
Q Consensus       193 ~~~~~dp~~ivv~~  206 (221)
                      |++.++- |+.|.-
T Consensus       138 E~~~~~~-G~AVkV  150 (155)
T COG1370         138 EMREFER-GMAVKV  150 (155)
T ss_pred             HHhhccc-cEEEEE
Confidence            9999886 555543

>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming

Probab=96.63  E-value=0.0045  Score=61.19  Aligned_cols=89  Identities=18%  Similarity=0.165  Sum_probs=78.9

Q ss_pred             ecceEEEEeeehhhhcc---cCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechh
Q psy8679         116 KSGKFRLHITALSYLAP---YAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTA  192 (221)
Q Consensus       116 Ks~kFrl~ItaL~~La~---~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~  192 (221)
                      ..|-|.|++.+-..|..   +.+++|+|++..+.-|.=|++||-.||....+++-.++=|+|.+.+|..||.|.+.-|..
T Consensus       444 ~dg~l~lt~~Ga~~l~~~~~~p~~rV~v~~~~~~f~~~g~~vfak~V~~ad~~IR~~dEV~vv~~~~~llavGra~lsg~  523 (540)
T TIGR00432       444 SDGLLVLGAEGAVRLHKGTDYPAWRVAVNEESEPFARKGKSVFAKFIIDCDNNIRANDEVLIVNADDELLATGKALLCAE  523 (540)
T ss_pred             CCCeEEeCHHHHHHHHhcCCCCceEEEECCcchhhccCCCcccCCccccCCCCCCCCCeEEEEcCCCcEEEEEehhcCHH
Confidence            46788888888877744   446999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEE
Q psy8679         193 ECKLADPLAIVGF  205 (221)
Q Consensus       193 ~~~~~dp~~ivv~  205 (221)
                      |+...+. |+.|.
T Consensus       524 em~~~~~-G~AVk  535 (540)
T TIGR00432       524 EMMDLNH-GQAVK  535 (540)
T ss_pred             HHHhhcC-ceEEE
Confidence            9998876 45543

This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.

>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A

Probab=96.48  E-value=0.0062  Score=47.35  Aligned_cols=81  Identities=20%  Similarity=0.327  Sum_probs=58.3

Q ss_pred             ccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcccCc-ceEEEccCccceeecccccccccceeecccCCCcceEEEEe
Q psy8679          98 NFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQ-FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLN  176 (221)
Q Consensus        98 ~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~ak-~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n  176 (221)
                      .+++-++...|+-+|++.| +.|+++-...-.+.+.+. +.|=++..--..||-|.++--+.         ...|-++..
T Consensus         9 ~~~~l~v~r~Gl~lg~~~k-~~f~Ps~~la~~~~~~~~~~~iel~~e~a~~yl~Ge~i~~~~---------~~~G~vlv~   78 (102)
T PF13636_consen    9 DLPGLKVLRAGLYLGEIKK-NRFEPSHALAMALGPEATKNVIELDDEQALRYLRGEDIELDP---------PDKGWVLVT   78 (102)
T ss_dssp             --TTSEECECSEEEEEEET-TEEEEBHHHHHCB--GCCS-EEEETCHHHHHHHCT--EE-SS-----------EEEEEEE
T ss_pred             ccCCCeEEecCcEeeeEeC-CcEEECHHHHHhhCccccceEEECCHHHHHHHHcCCcccCCC---------CCCcEEEEE
Confidence            3455589999999999976 899999988888877764 66777766667899999983332         367777777


Q ss_pred             cCCCeeeEEeee
Q psy8679         177 MNDVPLGFGVAA  188 (221)
Q Consensus       177 ~nd~pLGFGv~a  188 (221)
                      -.+.|||||...
T Consensus        79 ~~g~~LG~gk~~   90 (102)
T PF13636_consen   79 YEGFPLGWGKYV   90 (102)
T ss_dssp             ECCCEEEEEEEE
T ss_pred             ECCEeeEEEEee
Confidence            789999999984

>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]

Probab=95.95  E-value=0.046  Score=46.80  Aligned_cols=85  Identities=21%  Similarity=0.325  Sum_probs=74.7

Q ss_pred             eeecceEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecC-CCeeeEEeeeechh
Q psy8679         114 FTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMN-DVPLGFGVAAKSTA  192 (221)
Q Consensus       114 FtKs~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~n-d~pLGFGv~akst~  192 (221)
                      |...++.-+++-+|..+-+ +++.|-|...|...-+-|-||+.-||-...+++++.+.|||-... +-||..|++--|..
T Consensus        56 f~~~~~~iPTl~~l~~~~~-~~~~V~VD~GAvk~v~nGADvM~PGIv~~~~~ik~Gd~VvV~~e~~~~plAVG~alm~~~  134 (161)
T COG2016          56 FQRDDRLIPTLRLLLKLPP-GKYVVVVDEGAVKFVLNGADVMAPGIVSADGEIKEGDIVVVVDEKKGRPLAVGIALMSGK  134 (161)
T ss_pred             EEeCCeechhhHHHHhCCC-CccEEEEcCccHhhhcCCCceeccceeecCCCccCCCEEEEEEcCCCCeeEEEeeccCHH
Confidence            6666677777777776655 346999999999999999999999999999999999999999998 99999999999999


Q ss_pred             HhhhcCC
Q psy8679         193 ECKLADP  199 (221)
Q Consensus       193 ~~~~~dp  199 (221)
                      |+...+.
T Consensus       135 em~~~~k  141 (161)
T COG2016         135 EMEEKKK  141 (161)
T ss_pred             HHhhhcC
Confidence            9987665

>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed

Probab=95.29  E-value=0.027  Score=51.59  Aligned_cols=70  Identities=21%  Similarity=0.193  Sum_probs=60.3

Q ss_pred             ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEe
Q psy8679         136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFN  206 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~  206 (221)
                      -++.|.+.+...+..|+++...++.++.++....+-|+|++.++.++|.|.+..|++++++. +.|++|..
T Consensus       226 P~V~Lde~aa~~I~nG~~L~~~gi~~~~~~~~~gd~V~I~~~~G~~LAIG~~~~ss~el~~~-~kG~~vk~  295 (300)
T PRK04270        226 PKIIIKDSAVDAIAHGAPLYAPGIAKLEKGIKKGDLVAVFTLKGELVALGKALMDSDEILKA-EKGIVVDL  295 (300)
T ss_pred             CceEECHHHHHHHHcCCccccCCceecccccCCCCEEEEEeCCCcEEEEEEEccCHHHHHhc-CCceEEEE
Confidence            47888888888889999999888888877776777799999999999999999999999998 66787753

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=94.33  E-value=0.092  Score=51.09  Aligned_cols=102  Identities=16%  Similarity=0.252  Sum_probs=72.3

Q ss_pred             eEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcc-cCcceEEEccCccceeeccccc
Q psy8679          76 YCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAP-YAQFKVWVKPQAEQQFLYGHNI  154 (221)
Q Consensus        76 y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~-~ak~Kvwvk~~gE~~FLYGn~V  154 (221)
                      ..+..++++||++.+.+..   .+..-.++..|+.+|++.| +.|..+-...-.|.+ -.+..+=+...--..||-|..+
T Consensus       351 ~~~~~~~~~l~~~p~~~~~---~~~~l~v~r~Gl~lg~~kk-~rfePs~ala~~l~~~~~~~~~~l~~~~~~~Yl~ge~l  426 (470)
T PRK11933        351 LRLWQRDKEVWLFPAGIEP---LIGKVRFSRIGIKLAETHK-KGYRWQHEAVIALASPDNANAFELTPQEAEEWYMGRDI  426 (470)
T ss_pred             CcEEEECCEEEEeccccch---hhcCCeEeeeceeEeeeec-CCeeEcHHHHHHhCcccccceEecCHHHHHHHHCCCCc
Confidence            4577889999999997533   2444569999999999987 899998543333333 3345566665556679999987


Q ss_pred             ccccceeecccCCCcceEEEEecCCCeeeEEeeee
Q psy8679         155 LKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAK  189 (221)
Q Consensus       155 ~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~ak  189 (221)
                      --+      +++  ..|-++..-++.|||||....
T Consensus       427 ~~~------~~~--~~G~~lv~~~g~~lG~gK~~~  453 (470)
T PRK11933        427 YPQ------TAP--PAGEVIVTYQGQPIGLAKRVG  453 (470)
T ss_pred             cCC------CCC--CCCEEEEEECCEeeEEEEeeC
Confidence            422      222  257777777999999999964

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=93.74  E-value=0.091  Score=49.26  Aligned_cols=71  Identities=14%  Similarity=0.200  Sum_probs=62.7

Q ss_pred             hhccc--CcceEEEccCcccee-ecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCC
Q psy8679         129 YLAPY--AQFKVWVKPQAEQQF-LYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADP  199 (221)
Q Consensus       129 ~La~~--ak~Kvwvk~~gE~~F-LYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp  199 (221)
                      ||+-.  .+-+|+|+..|...- --|..++-.+|..++.++...+-|.|++.++.++|.|.+..|+.|+++...
T Consensus       272 wi~~~~~~~g~i~vd~gA~~al~~~g~sLl~~Gi~~v~g~f~~gd~V~i~~~~g~~va~G~~~~~s~e~~~~~g  345 (372)
T PRK05429        272 WIAGALQPAGEIVVDAGAVKALLERGKSLLPAGVTAVEGDFSRGDVVRIVDPDGREIARGLVNYSSDELRRIAG  345 (372)
T ss_pred             HHhcCCCCCCeEEECccHHHHHHhcCCccCccchhheECcccCCCEEEEECCCCCEEEEEEecCCHHHHHHHcC
Confidence            45433  457999998888777 689999999999999999999999999999999999999999999987743

>TIGR00425 CBF5 rRNA pseudouridine synthase, putative

Probab=93.53  E-value=0.11  Score=48.45  Aligned_cols=79  Identities=27%  Similarity=0.340  Sum_probs=62.5

Q ss_pred             ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEE---eccccee
Q psy8679         136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGF---NQSDIGE  212 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~---~qaD~Ge  212 (221)
                      -++-|.+.....+..|.++.-.++.+++++++..+-|+|++.++.+||.|.+.-|++++...+ .|++|-   ...|.|-
T Consensus       238 P~V~Vd~~~a~~I~NG~~I~~pgv~~~d~~i~~gd~V~V~~~~G~~LAIGea~~s~~ei~~~~-kG~vV~~~~~~~~~~~  316 (322)
T TIGR00425       238 KRVVVKDSAVDAICHGADLMVRGIARLEKGIEKGDTVAVITLKGEAVAVGIALMSTKDIANAD-KGVVADVKRVIMERGT  316 (322)
T ss_pred             CceEeCHHHHHHHHCCCccccccccccccccCCCCEEEEEECCCEEEEEEEEecCHHHHhhcC-CcEEEEEEEEeeCCCC
Confidence            366677777777889999988888877766666677999998999999999999999999877 567664   4567776


Q ss_pred             eec
Q psy8679         213 YIR  215 (221)
Q Consensus       213 YLR  215 (221)
                      |=+
T Consensus       317 ~~~  319 (322)
T TIGR00425       317 YPR  319 (322)
T ss_pred             CCC
Confidence            643

This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both.

>COG3270 Uncharacterized conserved protein [Function unknown]

Probab=93.48  E-value=0.12  Score=42.79  Aligned_cols=81  Identities=15%  Similarity=0.244  Sum_probs=67.4

Q ss_pred             cccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcccCc-ceEEEccCccceeecccccccccceeecccCCCcceEEEE
Q psy8679          97 ENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQ-FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVL  175 (221)
Q Consensus        97 ~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~ak-~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~  175 (221)
                      .++.+.+. ..|+-+|.|.| +.||+++++-..|+|-+. +=|=+.+..--.+.=|+||        .-+.+.++|=|+.
T Consensus        30 p~l~k~~~-r~GI~lg~~~k-kg~r~s~e~~~al~p~~~~nsiELd~e~a~~w~rG~dV--------~~~~~~~~g~viv   99 (127)
T COG3270          30 PCLFKEKI-HNGIKLGEIHK-KGYRWSHEGGFALAPPAVRNSIELDEEEAREWMRGRDV--------EPQESGPAGWVIV   99 (127)
T ss_pred             cchhhhhh-hcceEEEEEec-cCeeEEeeEEEEeCChhhcceEEeCHHHHHhhhcCCcc--------ccCCCCCCceEEE
Confidence            34555666 89999999988 679999999999999885 8899998888888899985        4455677778888


Q ss_pred             ecCCCeeeEEee
Q psy8679         176 NMNDVPLGFGVA  187 (221)
Q Consensus       176 n~nd~pLGFGv~  187 (221)
                      --++.+||||.-
T Consensus       100 ~~~~~~lG~aK~  111 (127)
T COG3270         100 KFQGNGLGLAKV  111 (127)
T ss_pred             EECCcccceeee
Confidence            888999999987

>TIGR01027 proB glutamate 5-kinase

Probab=91.68  E-value=0.26  Score=46.15  Aligned_cols=71  Identities=23%  Similarity=0.283  Sum_probs=62.9

Q ss_pred             hhhccc--CcceEEEccCccceeec-ccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcC
Q psy8679         128 SYLAPY--AQFKVWVKPQAEQQFLY-GHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLAD  198 (221)
Q Consensus       128 ~~La~~--ak~Kvwvk~~gE~~FLY-Gn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~d  198 (221)
                      .|||-.  .+-.|+|.+.++..-+- |..++-++|..+..++...+-|-|.+.++.|||-|.+..|..|+++..
T Consensus       263 ~wi~~~~~~~G~i~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~v~i~~~~~~~ia~g~~~y~s~~~~~i~  336 (363)
T TIGR01027       263 FWIAFASEPAGEITVDAGAEEALLERGKSLLPAGIVGVEGNFSRGEVVEILNPEGQDIGRGLVNYSSDELEKIK  336 (363)
T ss_pred             HHHhCCCCcCCeEEEChhHHHHHHhcCCccCCccceeeECcccCCCEEEEECCCCCEEEEEEecCCHHHHHHHc
Confidence            455543  45699999998888876 899999999999999999999999999999999999999999998764

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]

Probab=90.31  E-value=0.79  Score=45.58  Aligned_cols=92  Identities=23%  Similarity=0.276  Sum_probs=69.7

Q ss_pred             CeeeeeeeeeeeeecceEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCee
Q psy8679         103 HLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPL  182 (221)
Q Consensus       103 ~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pL  182 (221)
                      .++. |.-+|+|+-+ .-.++..+..+|-  . .+.||.=.   -|.=-.+|++.++.+.+|++-.|+-|+|.- ++..+
T Consensus       421 ~~~~-n~ql~~~~~~-~ls~t~~g~~~~~--~-~~~~VEId---~f~~~g~v~a~GV~da~edIrpnDeV~vv~-~~~v~  491 (519)
T COG1549         421 FLLI-NEQLGTFTPN-LLSLTPFGAELLY--G-GIYWVEID---DFIPRGSVFAPGVVDADEDIRPNDEVVVVH-GGEVR  491 (519)
T ss_pred             EEec-cceeeccccc-ceeccHhHhhhhh--c-CeeEEEcC---CccccccccccccccCCCCCCcCCEEEEEe-CCeEE
Confidence            4444 8899999975 3333333444443  2 67777522   277788999999999999999999997765 88999


Q ss_pred             eEEeeeechhHhhhcCCCcEEE
Q psy8679         183 GFGVAAKSTAECKLADPLAIVG  204 (221)
Q Consensus       183 GFGv~akst~~~~~~dp~~ivv  204 (221)
                      |.|+++-|..++..+.. |++|
T Consensus       492 gVGrA~msg~eM~~akk-GiaV  512 (519)
T COG1549         492 GVGRAVMSGREMVEAKK-GIAV  512 (519)
T ss_pred             EEeeeecChHHhcccCC-ceEE
Confidence            99999999999998876 4554

>PRK08557 hypothetical protein; Provisional

Probab=86.59  E-value=1.1  Score=43.15  Aligned_cols=106  Identities=19%  Similarity=0.188  Sum_probs=74.2

Q ss_pred             CCCeeeeeeeeeeee---ecceEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecc--cCCCcceEEEE
Q psy8679         101 PDHLLALGTCFGKFT---KSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITE--NTPKYQGVIVL  175 (221)
Q Consensus       101 r~~L~S~Gtc~GkFt---Ks~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite--~~~~~~GVvV~  175 (221)
                      .+.++.=|-+||-+.   ...+++++.++..++-.  +.+|-|+|  -..+|=|.+|....+..+.+  ++..++=|+|-
T Consensus        42 ~~ev~~~g~~~g~~~~~~~~~~w~~~p~~~~~~~~--~~~~~~~~--~~~~~~g~~v~~~~~~~~~~~~~~~~~~~v~~~  117 (417)
T PRK08557         42 RKRVYISEDQIGILEFDLLDLDWKFHPSPSYYLIE--EPKIKLKP--TKRRLKGKYIKEELIENPEELNEILENDYVGVE  117 (417)
T ss_pred             hhheeECCeEEEEEEEccccceeEEccchhhhhcc--Cceeeecc--cccccCCccccccccccccccccCCCCCEEEEe
Confidence            367888899999654   34577887777765533  56777776  45588999999998888777  77667734443


Q ss_pred             ecCCCeeeEEeeeechhHhhhcCCCcEEEEecccceeee
Q psy8679         176 NMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYI  214 (221)
Q Consensus       176 n~nd~pLGFGv~akst~~~~~~dp~~ivv~~qaD~GeYL  214 (221)
                      +  +..+|.|++..++...+++.+..  ....+|+-.++
T Consensus       118 ~--~~~~gvg~~~~~~~k~~~~~~~~--~~~~~~~~~~i  152 (417)
T PRK08557        118 I--GNFLGVGVKKEDRIKIKDLSLKK--ELDFEKIEDYL  152 (417)
T ss_pred             c--CCEEEEEEeecceEEEEecccCC--CCCcccHHHHH
Confidence            3  78999999988887777777644  23334444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
1sqw_A	188	Crystal Structure Of Kd93, A Novel Protein Expresse		2e-64
1t5y_A	190	Crystal Structure Of Northeast Structural Genomics		1e-63

>pdb|1SQW|A Chain A, Crystal Structure Of Kd93, A Novel Protein Expressed In The Human Pro Length = 188

Iteration: 1
 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 108/155 (69%), Positives = 133/155 (85%)
Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N++LL+DRPDGTYCFR   DRV+YVSEKI+ LA N   D L++LGTCFGKFTK+ KF
Sbjct: 20  IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLH+TAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80  RLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIR 215
           PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVR 174

>pdb|1T5Y|A Chain A, Crystal Structure Of Northeast Structural Genomics Consortium Target Hr2118: A Human Homolog Of Saccharomyces Cerevisiae Nip7p Length = 190

Iteration: 1
 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 133/160 (83%)
Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N++LL+DRPDGTYCFR   DRV+YVSEKI  LA N   D L++LGTCFGKFTK+ KF
Sbjct: 30  IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIXKLAANISGDKLVSLGTCFGKFTKTHKF 89
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLH+TAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +  D+
Sbjct: 90  RLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSXADI 149
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST +C+  DP AIV F+Q+DIGEY+R E+ L
Sbjct: 150 PLGFGVAAKSTQDCRKVDPXAIVVFHQADIGEYVRHEETL 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
1sqw_A	188	Saccharomyces cerevisiae NIP7P homolog; PUA, unkno	9e-94
2p38_A	166	Protein involved in ribosomal biogenesis; two alph	9e-38
1q7h_A	153	Conserved hypothetical protein; structural genomic	2e-05

>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A Length = 188

 Score =  271 bits (694), Expect = 9e-94
 Identities = 110/160 (68%), Positives = 136/160 (85%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N++LL+DRPDGTYCFR   DRV+YVSEKI+ LA N   D L++LGTCFGKFTK+ KF
Sbjct: 20  IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKF 79

Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
           RLH+TAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80  RLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139

Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
           PLGFGVAAKST +C+  DP+AIV F+Q+DIGEY+R E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179

>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi} Length = 166

 Score =  128 bits (322), Expect = 9e-38
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 16/138 (11%)

Query: 82  RDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSG----KFRLHITALSYLAPYAQFK 137
              V+ V+E++  + E+       +LGT  G          KF  ++     L    +  
Sbjct: 40  YRDVYAVNEEVWKIIEDINMR-PYSLGTFVGTIRVDENLVEKFYPNLEFF-SLIKLEKNY 97

Query: 138 VWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLA 197
           V + P+A   F  G +  K  +  I       + V+VLN     +G G+           
Sbjct: 98  VILGPKASFLFTTGKDAPKEAVREIKWQGS--KRVVVLNDLGDIIGIGLINP-------- 147

Query: 198 DPLAIVGFNQSDIGEYIR 215
                   N  D+GE++R
Sbjct: 148 KSDRRFIKNLKDVGEFLR 165

>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2 Length = 153

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 114 FTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVI 173
             ++G     +  L+Y    ++  V V   AE   L G ++   G+  + ++  K   + 
Sbjct: 50  VFQAGDLIPSVYLLNYR-NPSRNIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIF 108

Query: 174 VLNMNDVPLGFGVAAKSTAE 193
           V +     +  G+A     E
Sbjct: 109 VKSSKGYFIAVGMAEMDAGE 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
1sqw_A	188	Saccharomyces cerevisiae NIP7P homolog; PUA, unkno	100.0
2p38_A	166	Protein involved in ribosomal biogenesis; two alph	100.0
1sqw_A	188	Saccharomyces cerevisiae NIP7P homolog; PUA, unkno	99.82
1q7h_A	153	Conserved hypothetical protein; structural genomic	99.72
2p38_A	166	Protein involved in ribosomal biogenesis; two alph	98.96
2q07_A	306	Uncharacterized protein AF0587; monomer, structura	97.96
3d79_A	179	PUA domain, putative uncharacterized protein PH073	97.63
2cx0_A	187	Hypothetical protein APE0525; PUA domain, structur	97.4
3zv0_C	195	H/ACA ribonucleoprotein complex subunit 4; cell cy	97.38
1iq8_A	582	Archaeosine tRNA-guanine transglycosylase; (alpha/	97.35
3r90_A	188	Malignant T cell-amplified sequence 1; structural	97.23
3u28_A	400	H/ACA ribonucleoprotein complex subunit 4; pseudou	95.98
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.28
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	94.85
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	93.97
2aus_C	334	Pseudouridine synthase; isomerase, structural prot	89.97
2apo_A	357	Probable tRNA pseudouridine synthase B; protein-pr	89.37
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	87.68
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	87.47

>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A

Probab=100.00  E-value=1.3e-75  Score=499.59  Aligned_cols=166  Identities=66%  Similarity=1.151  Sum_probs=161.0

Q ss_pred             ceecccccccccccccCCCCeeEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcccC
Q psy8679          55 GTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYA  134 (221)
Q Consensus        55 Gtc~GyiG~ni~~li~~~d~~y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~a  134 (221)
                      -++++|||+|++.|++|||++||||+||+||||||++|++.|++|+|++|+|+|||||||||+|||+|||||+++|||||
T Consensus        14 ~kL~~yiG~n~~~li~~~~~~~~frl~~~rVyyv~~~i~~~a~~i~r~~l~s~Gtc~Gkftk~gkF~L~It~l~~La~~~   93 (188)
T 1sqw_A           14 EKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYA   93 (188)
T ss_dssp             HHHHHHHGGGTHHHHEETTEEEEEEEETTEEEEEEHHHHHTTTSSCHHHHHHHSEEEEEECTTSCEEECGGGHHHHGGGC
T ss_pred             HHHHHHhccCHHHHhcCCCCceEEEecCCEEEEECHHHHHHHhcCCcCCeeEeeeEEEEEecCCcEEEchhHHHHhhhcc
Confidence            35779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEecccceeee
Q psy8679         135 QFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYI  214 (221)
Q Consensus       135 k~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~qaD~GeYL  214 (221)
                      +|||||||+|||+|||||||+|+||+||||++|+++||||+||||+|||||++|+||+||+.+||+++||+||+|+||||
T Consensus        94 ~~kV~Vk~~~E~~flyG~nVfk~~V~~i~e~i~~~~~VvV~n~~d~pLG~G~a~~s~~e~~~~~~~~~vv~~q~D~GeYL  173 (188)
T 1sqw_A           94 KYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYV  173 (188)
T ss_dssp             SCEEEECHHHHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHSCTTSEEEEEEEEGGGTC
T ss_pred             CcEEEECCCceeeEEeccchhHHhhhhcCCCCCCCCEEEEEeCCCCEEEEEEeecCHHHHHhcCCCcEEEEEcccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q psy8679         215 RCEDEL  220 (221)
Q Consensus       215 R~E~~l  220 (221)
                      |+||+|
T Consensus       174 R~e~~~  179 (188)
T 1sqw_A          174 RHEETL  179 (188)
T ss_dssp             SCC---
T ss_pred             EcCcee
Confidence            999987

>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}

Probab=100.00  E-value=6.3e-53  Score=352.23  Aligned_cols=141  Identities=21%  Similarity=0.203  Sum_probs=127.5

Q ss_pred             ecccccccccccccCCCCeeEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeee----eecceEEEEeeehhhhcc
Q psy8679          57 CFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKF----TKSGKFRLHITALSYLAP  132 (221)
Q Consensus        57 c~GyiG~ni~~li~~~d~~y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkF----tKs~kFrl~ItaL~~La~  132 (221)
                      +..|+|.|.       |+.+|||+|++|||||++++++.|+++ |++|+|+|||||||    ||++||+|||||+++| +
T Consensus        22 L~~y~~~~~-------~~~~~~~~~~~~Vy~v~~~~~~~~~~~-~~~l~s~G~~~Gk~~~~~t~~~kf~pti~~l~~l-~   92 (166)
T 2p38_A           22 AEKYGELLH-------EFFCVVEGKYRDVYAVNEEVWKIIEDI-NMRPYSLGTFVGTIRVDENLVEKFYPNLEFFSLI-K   92 (166)
T ss_dssp             HHTTEEECC-------CCEEEEESSSEEEEEECHHHHHHTTTC-CCCGGGTEEEEEEEEECTTSCEEEEECHHHHTTE-E
T ss_pred             HHHhcCCCc-------ccEEEEEccCcEEEEECcHHHHHhhcc-CccceEEEEEEEEEEecccCCCeEEEehHHhhhc-c
Confidence            456665442       678999999999999999999999999 99999999999999    8899999999999999 9


Q ss_pred             cCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEeccccee
Q psy8679         133 YAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGE  212 (221)
Q Consensus       133 ~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~qaD~Ge  212 (221)
                      +++|||||+|+|||+||||+||+|+||.++|  +|++++|||+||+|.|||||++++|        |+++||+||+|+||
T Consensus        93 ~~k~kV~V~~~ae~~flyG~dV~k~gI~~~~--~~~~~~VvV~~~~~~pLG~G~a~~s--------~~gkvv~n~~dvGe  162 (166)
T 2p38_A           93 LEKNYVILGPKASFLFTTGKDAPKEAVREIK--WQGSKRVVVLNDLGDIIGIGLINPK--------SDRRFIKNLKDVGE  162 (166)
T ss_dssp             ECSSEEEECHHHHHHHHTTCCBCGGGEEEEE--CSSCSEEEEECTTSCEEEEEEECTT--------CSTTSEEEEEC---
T ss_pred             ccccEEEECCcceEeeecCCCcchhcceEEe--ecCCCEEEEEECCCcEEEEEEEEEC--------CCCEEEEEccccee
Confidence            9999999999999999999999999999999  9999999999999999999999988        89999999999999


Q ss_pred             eecc
Q psy8679         213 YIRC  216 (221)
Q Consensus       213 YLR~  216 (221)
                      |||+
T Consensus       163 YLR~  166 (166)
T 2p38_A          163 FLRR  166 (166)
T ss_dssp             ----
T ss_pred             eecC
Confidence            9995

>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A

Probab=99.82  E-value=7.3e-22  Score=168.44  Aligned_cols=62  Identities=56%  Similarity=1.056  Sum_probs=59.5

Q ss_pred             cccccccccccccccCCCCceeEEEeCCeEEEEcHHHHhhhcccCcccceecceeccccccc
Q psy8679           3 QVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSN   64 (221)
Q Consensus         3 ~~~~yiG~n~~~li~r~d~~y~FRlhk~RVyYvse~i~k~At~i~r~~L~slGtc~GyiG~n   64 (221)
                      .+++|||+|+++||+|||++|||||||+|||||||+|+++|+||+|++|+|+|||+|-+.+.
T Consensus        15 kL~~yiG~n~~~li~~~~~~~~frl~~~rVyyv~~~i~~~a~~i~r~~l~s~Gtc~Gkftk~   76 (188)
T 1sqw_A           15 KIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKT   76 (188)
T ss_dssp             HHHHHHGGGTHHHHEETTEEEEEEEETTEEEEEEHHHHHTTTSSCHHHHHHHSEEEEEECTT
T ss_pred             HHHHHhccCHHHHhcCCCCceEEEecCCEEEEECHHHHHHHhcCCcCCeeEeeeEEEEEecC
Confidence            47899999999999999999999999999999999999999999999999999999999753

>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2

Probab=99.72  E-value=1.7e-17  Score=134.08  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=103.6

Q ss_pred             ccCCCCeeEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcccCcceEEEccCcccee
Q psy8679          69 IDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQF  148 (221)
Q Consensus        69 i~~~d~~y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~F  148 (221)
                      +...+..+++|.++.++||++                  |.+++ |+ +|+|++|++++..+ |+++.+|||++.+++.+
T Consensus        25 ~~~~~~~~~~k~~~~~~~~v~------------------g~~l~-f~-~g~~~ptl~~l~~l-~~~~~~v~vd~ga~~~l   83 (153)
T 1q7h_A           25 DITGESLEVAAQKSASAYYIG------------------GKPMV-FQ-AGDLIPSVYLLNYR-NPSRNIVTVDEGAEPHI   83 (153)
T ss_dssp             CCTTCCCEEEECSSCEEEEET------------------TEEEE-EE-SSSEEECHHHHHHS-CCSSSEEEECTTTHHHH
T ss_pred             ccCCCcEEEEEeCCcEEEEEC------------------CEEEE-EE-CCeeeeehHHHhhC-CccCCEEEECHhHHHHH
Confidence            334567799999999999996                  44666 88 89999999999998 78999999999999999


Q ss_pred             ecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEe
Q psy8679         149 LYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFN  206 (221)
Q Consensus       149 LYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~  206 (221)
                      ++|.+++..||.++++++++++.|+|+++++.|+|+|+++.|++|+++.+ .|++|..
T Consensus        84 ~~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~~ia~G~~~~ss~e~~~~~-~G~~v~v  140 (153)
T 1q7h_A           84 LNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGEVMATK-RGKAARI  140 (153)
T ss_dssp             TTTCCEEGGGEEEECTTCCTTCEEEEEETTSCEEEEEEESSCHHHHHHHC-CSEEEEE
T ss_pred             HcCCCcCccccCcccCceeCCCEEEEEECCCCEEEEEEEecCHHHHHhcC-CCeEEEE
Confidence            99999999999999999999999999999999999999999999999864 4555544

>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}

Probab=98.96  E-value=2.4e-10  Score=95.15  Aligned_cols=80  Identities=14%  Similarity=0.064  Sum_probs=58.2

Q ss_pred             ccccccccccccccccCCCCceeEEEeCCeEEEEcHHHHhhhcccCcccceecceecccc------cccccccccCCCCe
Q psy8679           2 NQVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNI------GSNVKLLIDRPDGT   75 (221)
Q Consensus         2 ~~~~~yiG~n~~~li~r~d~~y~FRlhk~RVyYvse~i~k~At~i~r~~L~slGtc~Gyi------G~ni~~li~~~d~~   75 (221)
                      +.+++|+|.|.       |..+|||+|++|||||+++++++|+++ |++|+|+|||+|-+      ++.+...|.   +.
T Consensus        20 ~~L~~y~~~~~-------~~~~~~~~~~~~Vy~v~~~~~~~~~~~-~~~l~s~G~~~Gk~~~~~t~~~kf~pti~---~l   88 (166)
T 2p38_A           20 KEAEKYGELLH-------EFFCVVEGKYRDVYAVNEEVWKIIEDI-NMRPYSLGTFVGTIRVDENLVEKFYPNLE---FF   88 (166)
T ss_dssp             HHHHTTEEECC-------CCEEEEESSSEEEEEECHHHHHHTTTC-CCCGGGTEEEEEEEEECTTSCEEEEECHH---HH
T ss_pred             HHHHHhcCCCc-------ccEEEEEccCcEEEEECcHHHHHhhcc-CccceEEEEEEEEEEecccCCCeEEEehH---Hh
Confidence            35678877553       677999999999999999999999999 99999999999998      333333332   11


Q ss_pred             eEEEeeCcEEEEEcHHHH
Q psy8679          76 YCFREMRDRVFYVSEKIL   93 (221)
Q Consensus        76 y~frlhk~rVyYvs~~l~   93 (221)
                      +.....+.+| .|++.-.
T Consensus        89 ~~l~~~k~kV-~V~~~ae  105 (166)
T 2p38_A           89 SLIKLEKNYV-ILGPKAS  105 (166)
T ss_dssp             TTEEECSSEE-EECHHHH
T ss_pred             hhccccccEE-EECCcce
Confidence            1224445566 4666543

>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5

Probab=97.96  E-value=1.9e-05  Score=71.04  Aligned_cols=100  Identities=20%  Similarity=0.186  Sum_probs=83.5

Q ss_pred             cCCCCeeeeeeeeeeee-ecceEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEec
Q psy8679          99 FGPDHLLALGTCFGKFT-KSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNM  177 (221)
Q Consensus        99 i~r~~L~S~Gtc~GkFt-Ks~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~  177 (221)
                      ++|+.++.=|..++-|. ..|.|.+++.|...|.++.+++|+|+.     |+-+.+|+.-||...++++..++-|+|  .
T Consensus       193 ~p~~~v~vdg~~l~~~~~~dg~~~ptl~Ga~~l~~~~~~~V~Vd~-----~v~~G~v~~pGv~~~~~~i~~gd~V~V--~  265 (306)
T 2q07_A          193 YPELELLEGKKRLARVDRIYGMLDIYEKIAAYLLEKNIYTVEIGD-----FEVKGTIFAGGVLRADEKIRPNDVVVF--H  265 (306)
T ss_dssp             TTSCEEEETTEEEEEEETTTTEEEECHHHHHHHHHTTCSEEEECS-----SCCCSEEEGGGEEEECTTCCTTCEEEE--E
T ss_pred             CceEEEEECCEEEEEEEccCCeEEEcHHHHHHhhhCCCCEEEEcc-----cccCCceeCCeeEeCCCCcCCCCEEEE--E
Confidence            44566676789999775 578999999999999887789999997     654449999999999999999999999  7


Q ss_pred             CCCeeeEEeeeechhHhhhcCCCcEEEEe
Q psy8679         178 NDVPLGFGVAAKSTAECKLADPLAIVGFN  206 (221)
Q Consensus       178 nd~pLGFGv~akst~~~~~~dp~~ivv~~  206 (221)
                      ++.++|.|.+.-|++|++..+. |++|..
T Consensus       266 ~g~~vavG~a~ms~~em~~~~k-G~aV~v  293 (306)
T 2q07_A          266 NSRIFGVGLAAMSGKEMAGSEK-GIAINV  293 (306)
T ss_dssp             CSSCEEEEEESSCHHHHSCC---CEEEEE
T ss_pred             CCEEEEEEEEeeCHHHHhhcCC-ceEEEE
Confidence            7999999999999999998875 555543

>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}

Probab=97.63  E-value=0.00019  Score=59.44  Aligned_cols=89  Identities=20%  Similarity=0.207  Sum_probs=76.0

Q ss_pred             eeecceEEEEeeehhhhcccCc------ceEEEccCccceeecccccccccceeecccCCCcceEEEEec-CCCeeeEEe
Q psy8679         114 FTKSGKFRLHITALSYLAPYAQ------FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNM-NDVPLGFGV  186 (221)
Q Consensus       114 FtKs~kFrl~ItaL~~La~~ak------~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~-nd~pLGFGv  186 (221)
                      |...+.|-+++.++..+-+ ..      .+|+|.+.++.--+.|.+++-.||..++.++.+++-|.|++. ++.++|.|.
T Consensus        68 f~~dg~l~PTl~~l~~~p~-~~p~~~~~~~v~vd~gA~~~l~~GasL~~~GV~~~~g~f~~Gd~V~v~~~~~g~~iavG~  146 (179)
T 3d79_A           68 IRRKDLIFPLVIALYNLSD-EEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFVVEEKYGRPLAIGI  146 (179)
T ss_dssp             EEETTEEEECHHHHHHHTT-TSCGGGSTTEEEECGGGHHHHHTTCCEEGGGEEEECTTCCTTCEEEEEETTTCCEEEEEE
T ss_pred             EEeCCeEeehHHHHHhCch-hccccccCCEEEECccHHHHHhCCCCcCCCcEEEccCCccCCCEEEEEECCCCeEEEEEE
Confidence            3346899999999887643 44      799999998877779999999999999999999999999998 799999999


Q ss_pred             eeechhHhhhcCCCcEEE
Q psy8679         187 AAKSTAECKLADPLAIVG  204 (221)
Q Consensus       187 ~akst~~~~~~dp~~ivv  204 (221)
                      +.-|++|++..+. |++|
T Consensus       147 ~~~ss~e~~~~~k-G~av  163 (179)
T 3d79_A          147 ALMSGKVMKEKNR-GKAV  163 (179)
T ss_dssp             ESSCHHHHHHCSS-SEEE
T ss_pred             EEcCHHHHHhcCC-ceEE
Confidence            9999999987554 4444

>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A

Probab=97.40  E-value=0.00023  Score=59.53  Aligned_cols=77  Identities=17%  Similarity=0.207  Sum_probs=69.8

Q ss_pred             cceEEEEeeehhhhcccC--cceEEEccCccceeecccccccccceeecccCCCcceEEEEec-CCCeeeEEeeeechhH
Q psy8679         117 SGKFRLHITALSYLAPYA--QFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNM-NDVPLGFGVAAKSTAE  193 (221)
Q Consensus       117 s~kFrl~ItaL~~La~~a--k~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~-nd~pLGFGv~akst~~  193 (221)
                      .+.|.+++.++.-+ |..  +.+|+|.+.+...-+.|.+++-.||..+..++.+++-|.|.+. ++.|+|.|.+.-|+.|
T Consensus        73 dg~l~PTl~~l~~~-p~~~l~g~v~vd~gA~~al~~GasLl~~GV~~~~g~f~~Gd~V~I~~~~~g~~iA~G~~~~ss~e  151 (187)
T 2cx0_A           73 DGRIYPTLQCLKAF-GVDWLKGVVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMVGVAEVDSSA  151 (187)
T ss_dssp             TSCEEECHHHHHHH-CSTTSSEEEEECHHHHHHHHHTCCEEGGGEEEEEECCCTTCEEEEEETTTTEEEEEEEESSCHHH
T ss_pred             CCeEEEEHHHHHhC-CcccCCcEEEECccHHHHHhCCCCcCCCccEeCCCCcCCCCEEEEEECCCCeEEEEEEEecCHHH
Confidence            68999999999664 555  6699999988876679999999999999999999999999999 7999999999999999


Q ss_pred             h
Q psy8679         194 C  194 (221)
Q Consensus       194 ~  194 (221)
                      +
T Consensus       152 i  152 (187)
T 2cx0_A          152 L  152 (187)
T ss_dssp             H
T ss_pred             H
Confidence            9

>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.0002  Score=61.29  Aligned_cols=78  Identities=21%  Similarity=0.311  Sum_probs=69.8

Q ss_pred             ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEe---ccccee
Q psy8679         136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFN---QSDIGE  212 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~---qaD~Ge  212 (221)
                      -+|.|++.+....+.|.+++-.||.+++.++..++-|.|++.++.++|.|.+..|++|++..+ .|++|..   ..|.|-
T Consensus        76 g~VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~~GD~V~V~~~~G~~IAvG~a~~sS~Ei~~~~-kG~aVkv~rVimd~~~  154 (195)
T 3zv0_C           76 KRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCD-HGVVASVKRCIMERDL  154 (195)
T ss_dssp             EEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCS-SSEEEEEEEECBCTTS
T ss_pred             CeEEECHHHHHHHhcCCCccCCCcEecCCCcCCCCEEEEEcCCCCEEEEEEEcCCHHHHhhcC-CcEEEEEEEEEeCCCC
Confidence            589999999999999999999999999999999999999999999999999999999999998 5777654   456555


Q ss_pred             ee
Q psy8679         213 YI  214 (221)
Q Consensus       213 YL  214 (221)
                      |=
T Consensus       155 Yp  156 (195)
T 3zv0_C          155 YP  156 (195)
T ss_dssp             SC
T ss_pred             cC
Confidence            53

>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A

Probab=97.35  E-value=0.0004  Score=67.20  Aligned_cols=98  Identities=23%  Similarity=0.237  Sum_probs=82.0

Q ss_pred             eeeeeeee-ecceEEEEeeehhhhc---ccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeee
Q psy8679         108 GTCFGKFT-KSGKFRLHITALSYLA---PYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLG  183 (221)
Q Consensus       108 Gtc~GkFt-Ks~kFrl~ItaL~~La---~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLG  183 (221)
                      |.-++-.. ..|.|.+++.++..+-   +..+.+|+|.+.+...-+.|.+++-.||..+..++..++-|.|.+.++.++|
T Consensus       476 g~~l~~~~~~dg~~~ptl~g~~~~~~~~~~~~g~v~VD~gA~~av~~GasLl~~GV~~~~g~f~~Gd~V~V~~~~g~~ia  555 (582)
T 1iq8_A          476 GKRLATVRADDGLLTLGIEGAKRLHRVLPYPRMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLA  555 (582)
T ss_dssp             SSEEEEECTTTSCEEECHHHHHHHHHHSCTTTTEEEECTTTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEECTTCCEEE
T ss_pred             CEEEEEEECCCCcEEecHHHHHHHHhhccCCCCEEEECchHHHHHhcCCCcCCCceEecCCCcCCCCEEEEEeCCCCEEE
Confidence            44555332 3689999999986542   3456899999999888889999999999999999999999999999999999


Q ss_pred             EEeeeechhHhhhcCCCcEEEEe
Q psy8679         184 FGVAAKSTAECKLADPLAIVGFN  206 (221)
Q Consensus       184 FGv~akst~~~~~~dp~~ivv~~  206 (221)
                      .|.+.-|++|+++.+. |++|..
T Consensus       556 ~G~a~~ss~ei~~~~k-G~aV~v  577 (582)
T 1iq8_A          556 TGQALLSGREMIVFQY-GRAVKV  577 (582)
T ss_dssp             EEEESSCHHHHHHCCS-SEEEEE
T ss_pred             EEEEeeCHHHHHhcCC-ceEEEE
Confidence            9999999999999764 666643

>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}

Probab=97.23  E-value=0.00031  Score=59.07  Aligned_cols=87  Identities=22%  Similarity=0.175  Sum_probs=75.2

Q ss_pred             ceEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecc---cCCCcceEEEEec-CCCeeeEEeeeechhH
Q psy8679         118 GKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITE---NTPKYQGVIVLNM-NDVPLGFGVAAKSTAE  193 (221)
Q Consensus       118 ~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite---~~~~~~GVvV~n~-nd~pLGFGv~akst~~  193 (221)
                      |.+-+++-+|.-. |....+|+|++.+..--+.|.|++--||....+   ++.+++-|+|++. ++.|++.|++.-|++|
T Consensus        76 g~l~PTl~~l~~~-p~~lp~v~Vd~~av~~v~~GA~Lm~PGv~~~~~~~~~i~~Gd~V~V~~~~~~~~vAVG~a~mss~e  154 (188)
T 3r90_A           76 GPFYPTLRLLHKY-PFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAED  154 (188)
T ss_dssp             CCCEECHHHHHHS-GGGSCEEEECGGGHHHHTTTCCEETHHHHSTTCBCCCCCTTCEEEEEETTCSSCSEEEEESSCHHH
T ss_pred             CeEechHHHHhhC-cccCCEEEEChhHHHHhhcCCccccCeEEccCCCcccccCCCEEEEEECCCCcEEEEEEEEeCHHH
Confidence            5788888777554 566679999999999999999999999998886   8999999999998 8999999999999999


Q ss_pred             hhhcCCCcEEEEe
Q psy8679         194 CKLADPLAIVGFN  206 (221)
Q Consensus       194 ~~~~dp~~ivv~~  206 (221)
                      +...+ .|++|..
T Consensus       155 ~~~~~-kG~aV~v  166 (188)
T 3r90_A          155 IEKVN-KGIGIEN  166 (188)
T ss_dssp             HHHHC-CSEEEEE
T ss_pred             HhhcC-CcEEEEE
Confidence            99874 4676654

>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A

Probab=95.98  E-value=0.0068  Score=56.73  Aligned_cols=77  Identities=21%  Similarity=0.330  Sum_probs=67.3

Q ss_pred             ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEe---ccccee
Q psy8679         136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFN---QSDIGE  212 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~---qaD~Ge  212 (221)
                      -+|.|++.....+.+|+.+...++.+..++++.++.|+|++.++.+||.|.+.-+++++..++. |+||..   ..|.|-
T Consensus       267 p~V~L~deaa~~V~NGq~L~~pgVl~~~~~i~~gd~VvVvt~kGelLAIG~A~mss~em~~~~~-G~vvk~~rV~m~~~~  345 (400)
T 3u28_A          267 KRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDH-GVVASVKRCIMERDL  345 (400)
T ss_dssp             CEEEECHHHHHHHHHHSEEEGGGEEEECTTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCSS-SEEEEEEEECSCTTS
T ss_pred             CccccCHHHHHHHHCcCccccCccccccccCCCCCEEEEEeCCCcEEEEEEEEeCHHHHhhcCC-cEEEEEEEEeecCCC
Confidence            4799999999999999999999999999999999999999999999999999999999999976 666654   235555


Q ss_pred             e
Q psy8679         213 Y  213 (221)
Q Consensus       213 Y  213 (221)
                      |
T Consensus       346 y  346 (400)
T 3u28_A          346 Y  346 (400)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.28  E-value=0.034  Score=52.08  Aligned_cols=98  Identities=17%  Similarity=0.258  Sum_probs=73.7

Q ss_pred             eEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcccC-cceEEEccCccceeeccccc
Q psy8679          76 YCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYA-QFKVWVKPQAEQQFLYGHNI  154 (221)
Q Consensus        76 y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~a-k~Kvwvk~~gE~~FLYGn~V  154 (221)
                      +.+..+.++||++.+.+.    .+.+-.++..|..+|++.| ++|+.+-...-.|++-. ++.+=+...-...||-|+.+
T Consensus       343 ~~~~~~~~~~~~~p~~~~----~~~~l~~~r~G~~lg~~kk-~~f~p~~~la~~l~~~~~~~~~~l~~~~~~~yl~ge~i  417 (456)
T 3m4x_A          343 GRLLVFNDHLWEVPELAP----SLDGLKVVRTGLHLGDFKK-NRFEPSYALALATKKIENIPCLPITQKEWQSYTAGETF  417 (456)
T ss_dssp             SEEEEETTEEEEECTTCC----CCTTCCEEEESEEEEEEET-TEEEECHHHHHTCCCGGGSCEEEECHHHHHHHHHTCCE
T ss_pred             CceEEECCEEEEeccCcc----cccCCeEEEcCceeeEEeC-CceeECHHHHHhcCccccCcEEEcCHHHHHHHhCCCCc
Confidence            467788999999998762    3466789999999999976 89999865544455543 34677766666789999987


Q ss_pred             ccccceeecccCCCcceEEEEecCCCeeeEEeee
Q psy8679         155 LKSGLARITENTPKYQGVIVLNMNDVPLGFGVAA  188 (221)
Q Consensus       155 ~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~a  188 (221)
                      --      ++    ..|-++..-++.|||||...
T Consensus       418 ~~------~~----~~g~~lv~~~g~~lG~~k~~  441 (456)
T 3m4x_A          418 QR------DG----NQGWVLLVLDKIPVGFGKQV  441 (456)
T ss_dssp             EC------SC----CCEEEEEEETTEEEEEEEEE
T ss_pred             cc------CC----CCCEEEEEECCEeEEEEEee
Confidence            42      21    26877777799999999885

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=94.85  E-value=0.055  Score=50.61  Aligned_cols=103  Identities=15%  Similarity=0.240  Sum_probs=74.9

Q ss_pred             eEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcccCc-ceEEEccCccceeeccccc
Q psy8679          76 YCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQ-FKVWVKPQAEQQFLYGHNI  154 (221)
Q Consensus        76 y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~ak-~Kvwvk~~gE~~FLYGn~V  154 (221)
                      ..+....+++|++++.+...   ++.-.++..|..+|++.| +.|+++-...-.|.+.+. ..+=+...--..||-|+.|
T Consensus       355 ~~~~~~~~~~~~~p~~~~~~---~~~lr~~r~G~~lg~~kk-~rf~Ps~~la~~l~~~~~~~~~~l~~~~~~~yL~Ge~i  430 (479)
T 2frx_A          355 LRLWQRDKELWLFPVGIEAL---IGKVRFSRLGIKLAETHN-KGYRWQHEAVIALASPDNMNAFELTPQEAEEWYRGRDV  430 (479)
T ss_dssp             EEEEESSSEEEEEEHHHHTT---BTTBCCSEESEEEEEEET-TEEEECHHHHHHHBCSSSSSEEECCHHHHHHHHTTCCC
T ss_pred             ceEEEECCEEEEeccccchh---ccCcEEEecceEEEEEec-CCceEcHHHHHhcchhhcCcEEECCHHHHHHHhcCCCC
Confidence            56777789999999987543   344578999999999987 789999876666766553 4555654445579999987


Q ss_pred             ccccceeecccCCCcceEEEEecCCCeeeEEeeeec
Q psy8679         155 LKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKS  190 (221)
Q Consensus       155 ~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~aks  190 (221)
                      --.      ++  ...|-|+..-.+.|||||....+
T Consensus       431 ~~~------~~--~~~G~vlv~~~g~pLG~gK~~g~  458 (479)
T 2frx_A          431 YPQ------AA--PVADDVLVTFQHQPIGLAKRIGS  458 (479)
T ss_dssp             CCS------SC--CSCSEEEEEETTEEEEEEECTTT
T ss_pred             cCC------CC--CCCCEEEEEECCEeeEEEEeeCC
Confidence            432      11  23577777778999999998644

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=93.97  E-value=0.045  Score=51.39  Aligned_cols=100  Identities=17%  Similarity=0.225  Sum_probs=71.7

Q ss_pred             eEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhccc-----CcceEEEccCcc--cee
Q psy8679          76 YCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPY-----AQFKVWVKPQAE--QQF  148 (221)
Q Consensus        76 y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~-----ak~Kvwvk~~gE--~~F  148 (221)
                      +.+..+.++||++.+.+..    +.+-.++..|..+|++.| ++|+.+-...-.|++-     ++..+=+....|  ..|
T Consensus       336 ~~~~~~~~~~~~~p~~~~~----~~~l~~~r~G~~lg~~kk-~~f~p~~~la~~l~~~~~~~~~~~~~~l~~~~~~~~~y  410 (464)
T 3m6w_A          336 GPVLDRAGHLYLLPEGLPT----LLGLKAPAPGLYLGKVQK-GRFLPARALALAFGATLPWPEGLPRLALTPEDPRALAF  410 (464)
T ss_dssp             SCEEEETTEEEECCTTCBC----CTTSCCSBSSEEEEEEET-TEEEEBHHHHHHBTTTBCCCTTSCEEEECTTSHHHHHH
T ss_pred             ccEEEECCEEEEeccCccc----ccCCeEEEccceeeEEeC-CceeECHHHHHhcCcccccccccceEEecccHHHHHHH
Confidence            4577789999999986532    355688999999999976 8999986554445543     245566765553  389


Q ss_pred             ecccccccccceeecccCCCcceEEEE----ecCCCeeeEEeeee
Q psy8679         149 LYGHNILKSGLARITENTPKYQGVIVL----NMNDVPLGFGVAAK  189 (221)
Q Consensus       149 LYGn~V~Ks~l~rite~~~~~~GVvV~----n~nd~pLGFGv~ak  189 (221)
                      |-|+.+--      ++  +. .|.++.    .-++.|||||....
T Consensus       411 l~ge~i~~------~~--~~-~G~~lv~~~~~~~g~~lG~~k~~g  446 (464)
T 3m6w_A          411 ATGEGVAW------EG--ED-HPLALVVLKTAAGEFPLDFGKAKR  446 (464)
T ss_dssp             HTTCCEEC------CS--CC-EEEEEEEEEETTEEEEEEEEEEET
T ss_pred             HCCCCccC------CC--CC-CceEEEeeccEECCEeeEEEEccC
Confidence            99998742      22  12 577766    77899999998853

>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A

Probab=89.97  E-value=0.46  Score=43.03  Aligned_cols=65  Identities=23%  Similarity=0.306  Sum_probs=54.5

Q ss_pred             ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCC
Q psy8679         136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPL  200 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~  200 (221)
                      -+|.|++.....+..|+.+...++....++++..+-|.|++.++.+||.|.+..|..+....+..
T Consensus       251 p~V~L~de~a~~V~nGq~L~~~gv~~~~~~i~~gd~V~V~~~~G~fLAIGe~~~s~~e~~~~~~G  315 (334)
T 2aus_C          251 PKIWIKDSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIERSKG  315 (334)
T ss_dssp             CEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHCSSS
T ss_pred             cEEEECHHHHHHHHCCCccccCcccccccccCCCCEEEEEecCCeEEEEEEeccCchhccccCCC
Confidence            47889999999999999998777766777777777899999999999999988788887766553

>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2

Probab=89.37  E-value=0.51  Score=43.37  Aligned_cols=65  Identities=26%  Similarity=0.266  Sum_probs=54.1

Q ss_pred             ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCC
Q psy8679         136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPL  200 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~  200 (221)
                      -+|.|+++....+.+|+.+...++.+++++++..+.|+|++.++.+||.|.+..+++++...+..
T Consensus       270 P~v~l~~~~~~~i~nG~~L~~pgi~~~~~~i~~gd~V~v~~~~G~flAIGea~~~~~ei~~~~kG  334 (357)
T 2apo_A          270 KKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKG  334 (357)
T ss_dssp             EEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTSCEEEEEEESSCHHHHHHCSSS
T ss_pred             cEEEECHHHHHHHhCcCccCCCcccccccccCCCCeEEEEcCCCEEEEEEEeccccccccccCCC
Confidence            48899999999999999998777767777777777899999999999999987777777765543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=87.68  E-value=0.62  Score=41.48  Aligned_cols=55  Identities=13%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             eEEEccCccceeecccc-cccccceeecccCCCcceEEEEecCCCeeeEEeeeech
Q psy8679         137 KVWVKPQAEQQFLYGHN-ILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKST  191 (221)
Q Consensus       137 Kvwvk~~gE~~FLYGn~-V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst  191 (221)
                      +|.+|+++|...+-|.. |++..|.++..+....+-|.|++.++.|||.|...+.+
T Consensus         4 ~~~l~~~~~~~~~~~~pwv~~~~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~~~~s   59 (396)
T 3c0k_A            4 RLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPAS   59 (396)
T ss_dssp             EEEECTTCCHHHHTTCSEEEGGGEEEEESCCCTTCEEEEECTTCCEEEEEEECTTS
T ss_pred             EEEECchHHHHHhcCCCeEEhhHhhcccCCCCCCCEEEEEcCCCCEEEEEEECCCC
Confidence            69999999999888888 78888888888877888899999999999999987554

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A

Probab=87.47  E-value=0.44  Score=43.26  Aligned_cols=65  Identities=17%  Similarity=0.240  Sum_probs=58.1

Q ss_pred             cceEEEccCccceee-cccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCC
Q psy8679         135 QFKVWVKPQAEQQFL-YGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADP  199 (221)
Q Consensus       135 k~Kvwvk~~gE~~FL-YGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp  199 (221)
                      +-+|+|...+..--+ -|..++-++|..+..++...+-|.|.+.++.++|-|.+..|.+|+++...
T Consensus       275 ~G~v~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~V~i~~~~g~~ia~G~~~y~s~e~~~~~g  340 (367)
T 2j5v_A          275 AGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAG  340 (367)
T ss_dssp             SCEEEECHHHHHHHHHHCCCBCGGGEEEEESCCCTTCEEEEEETTCCEEEEEECSSCHHHHHHHTT
T ss_pred             CCEEEECcCHHHHHHhCCCccCCcccEEEECcccCCCEEEEECCCCCEEEEEEecCCHHHHHHHhC
Confidence            458888877777666 58899999999999999999999999999999999999999999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d1sqwa1	76	b.122.1.1 (A:95-170) Nip7p homolog, C-terminal dom	5e-46
d1sqwa2	94	d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain	1e-44
d1iq8a3	77	b.122.1.1 (A:506-582) Archaeosine tRNA-guanine tra	5e-04

>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Nip7p homolog, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (367), Expect = 5e-46
 Identities = 52/76 (68%), Positives = 66/76 (86%)

Query: 136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECK 195
           +KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+PLGFGVAAKST +C+
Sbjct: 1   YKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCR 60

Query: 196 LADPLAIVGFNQSDIG 211
             DP+AIV F+Q+DIG
Sbjct: 61  KVDPMAIVVFHQADIG 76

>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Pre-PUA domain
family: Nip7p homolog, N-terminal domain
domain: Nip7p homolog, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 1e-44
 Identities = 53/75 (70%), Positives = 63/75 (84%)

Query: 61  IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
           IG N++LL+DRPDGTYCFR   DRV+YVSEKI+ LA N   D L++LGTCFGKFTK+ KF
Sbjct: 20  IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKF 79

Query: 121 RLHITALSYLAPYAQ 135
           RLH+TAL YLAPYA+
Sbjct: 80  RLHVTALDYLAPYAK 94

>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 77

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Archaeosine tRNA-guanine transglycosylase, C3 domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 24/61 (39%)

Query: 135 QFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAEC 194
           + +V V  +AE     G ++    +         Y  V+V+N ND  L  G A  S  E 
Sbjct: 2   RMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREM 61

Query: 195 K 195
            
Sbjct: 62  I 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1sqwa1	76	Nip7p homolog, C-terminal domain {Human (Homo sapi	100.0
d1sqwa2	94	Nip7p homolog, N-terminal domain {Human (Homo sapi	100.0
d1sqwa2	94	Nip7p homolog, N-terminal domain {Human (Homo sapi	99.94
d1iq8a3	77	Archaeosine tRNA-guanine transglycosylase, C3 doma	98.58
d2ey4a1	84	Pseudouridine synthase II TruB, C-terminal domain	98.51
d2apoa1	85	Pseudouridine synthase II TruB, C-terminal domain	98.45
d1q7ha1	85	Hypothetical protein Ta1423, C-terminal domain {Ar	98.2
d1r3ea1	81	Pseudouridine synthase II TruB, C-terminal domain	97.9
d2cx1a1	93	Hypothetical protein APE0525, C-terminal domain {A	96.96
d2q07a1	68	Uncharacterized protein AF0587 {Archaeoglobus fulg	96.82
d2as0a1	72	Hypothetical protein PH1915, N-terminal domain {Ar	96.3

>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Nip7p homolog, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-48  Score=284.94  Aligned_cols=76  Identities=68%  Similarity=1.197  Sum_probs=75.5

Q ss_pred             ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEecccce
Q psy8679         136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIG  211 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~qaD~G  211 (221)
                      |||||||+|||+|||||||+||||+||||+||+|+|||||||+|+|||||++||||+|||++||++||||||||+|
T Consensus         1 ~KVWvKp~~E~~FLYGn~VlK~~l~rite~~p~~~GVvV~sm~D~PLGFGvaakst~e~r~~dp~~ivv~hQaDiG   76 (76)
T d1sqwa1           1 YKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG   76 (76)
T ss_dssp             CEEEECHHHHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHSCTTSEEEEEEEEGG
T ss_pred             CcEEecCCcccceeeccchhhhhcccccCCCCCCceEEEEeCCCCccceeeeccCHHHHhhCCCccEEEEEecCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999999998

>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Pre-PUA domain
family: Nip7p homolog, N-terminal domain
domain: Nip7p homolog, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-42  Score=265.92  Aligned_cols=82  Identities=65%  Similarity=1.115  Sum_probs=79.8

Q ss_pred             cceecccccccccccccCCCCeeEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhccc
Q psy8679          54 LGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPY  133 (221)
Q Consensus        54 lGtc~GyiG~ni~~li~~~d~~y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~  133 (221)
                      +-++++|||+|++.|||+||++||||||++|||||||+|+|+|++|+|+||+|+||||||||||||||||||||++||||
T Consensus        13 feKLa~yiG~Ni~~li~~~d~~y~FRLhk~RVyYvse~i~k~A~~i~r~~L~s~Gtc~GKFTKtgkFrL~ITaL~~La~y   92 (94)
T d1sqwa2          13 FEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPY   92 (94)
T ss_dssp             HHHHHHHHGGGTHHHHEETTEEEEEEEETTEEEEEEHHHHHTTTSSCHHHHHHHSEEEEEECTTSCEEECGGGHHHHGGG
T ss_pred             HHHHHHHHhhhHHHHhcCCCCCEEEEEeCCEEEEEhHHHHHHhhcCChhheeEeeeEEEEEecCCeEEEEEEehHhhhhh
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cc
Q psy8679         134 AQ  135 (221)
Q Consensus       134 ak  135 (221)
                      ||
T Consensus        93 Ak   94 (94)
T d1sqwa2          93 AK   94 (94)
T ss_dssp             CS
T ss_pred             cC
Confidence            96

>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Pre-PUA domain
family: Nip7p homolog, N-terminal domain
domain: Nip7p homolog, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.6e-29  Score=189.36  Aligned_cols=62  Identities=56%  Similarity=1.056  Sum_probs=58.3

Q ss_pred             cccccccccccccccCCCCceeEEEeCCeEEEEcHHHHhhhcccCcccceecceeccccccc
Q psy8679           3 QVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSN   64 (221)
Q Consensus         3 ~~~~yiG~n~~~li~r~d~~y~FRlhk~RVyYvse~i~k~At~i~r~~L~slGtc~GyiG~n   64 (221)
                      .+|+|||+|+++|||||||+|||||||||||||||+|||+|+||+|+||+|+|||+|=.-+.
T Consensus        15 KLa~yiG~Ni~~li~~~d~~y~FRLhk~RVyYvse~i~k~A~~i~r~~L~s~Gtc~GKFTKt   76 (94)
T d1sqwa2          15 KIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKT   76 (94)
T ss_dssp             HHHHHHGGGTHHHHEETTEEEEEEEETTEEEEEEHHHHHTTTSSCHHHHHHHSEEEEEECTT
T ss_pred             HHHHHHhhhHHHHhcCCCCCEEEEEeCCEEEEEhHHHHHHhhcCChhheeEeeeEEEEEecC
Confidence            46899999999999999999999999999999999999999999999999999999866443

>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Archaeosine tRNA-guanine transglycosylase, C3 domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.58  E-value=5e-08  Score=69.43  Aligned_cols=70  Identities=23%  Similarity=0.165  Sum_probs=65.8

Q ss_pred             cceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEE
Q psy8679         135 QFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGF  205 (221)
Q Consensus       135 k~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~  205 (221)
                      ++||||+..++..-..|.+++..||.++++++..++-|+|++.++.++|.|.+..|++|+..++. |++|.
T Consensus         2 ~~rV~Vd~gA~~~v~~Ga~l~~~GV~~~~~~~~~Gd~V~I~~~~g~~iavG~a~~ss~ei~~~~k-G~avk   71 (77)
T d1iq8a3           2 RMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREMIVFQY-GRAVK   71 (77)
T ss_dssp             TTEEEECTTTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCCS-SEEEE
T ss_pred             CEEEEECcchHHHHHhcCCcccCeEEEEcCCCCCCCEEEEEECCCcEEEEEEEecCHHHHHhcCC-cEEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999985 66664

>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.51  E-value=7.4e-08  Score=69.66  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=67.2

Q ss_pred             eEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEE--e-cccceee
Q psy8679         137 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGF--N-QSDIGEY  213 (221)
Q Consensus       137 Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~--~-qaD~GeY  213 (221)
                      ||||++++...-+.|.+++..||.++++++..++-|+|++.++.++|+|.+..|++|+...+.. +++-  | ..|.|.|
T Consensus         3 ~v~Vd~~A~~ai~~Ga~l~~~GV~~~~~~f~~Gd~V~I~~~~g~~iavG~a~~ss~ei~~~~kG-~av~~~~v~m~~~~y   81 (84)
T d2ey4a1           3 KVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKG-IAVDVEKVFMPRDWY   81 (84)
T ss_dssp             EEEECHHHHHHHTTTCCEEGGGEEEEETTCCTTCEEEEEETTSCEEEEEEESSCHHHHHHCCSS-EEEEEEEECSCTTSS
T ss_pred             EEEEChhHHHHHHcCCCcCCCeEEEEcCCCCCCCEEEEEeCCCceEEEEEEeeCHHHHHHhcCC-eEEEEEEEecCCCCC
Confidence            6999999999999999999999999999999999999999999999999999999999999864 4431  1 2556655

>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.45  E-value=1.2e-07  Score=68.82  Aligned_cols=78  Identities=27%  Similarity=0.294  Sum_probs=68.7

Q ss_pred             eEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEE---ecccceee
Q psy8679         137 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGF---NQSDIGEY  213 (221)
Q Consensus       137 Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~---~qaD~GeY  213 (221)
                      +|||+.+|...-++|.+++-.||.++++++..++-|+|++.++.++|.|.+..|++|+...++ |+++-   -..|.|.|
T Consensus         4 ~v~Vd~~Av~ai~~Ga~L~~pGV~~~~~~~~~Gd~V~V~~~~g~~iavG~~~~ss~ei~~~~~-G~av~~~~V~~~~~~Y   82 (85)
T d2apoa1           4 KVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADK-GVAVDVERVYMDRGTY   82 (85)
T ss_dssp             EEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTSCEEEEEEESSCHHHHHHCSS-SEEEEEEEECSCTTSS
T ss_pred             EEEECccHHHHHHcCCCccccEEEEEcCCCcCCCEEEEEeCCCCEEEEEEEeeCHHHHhhcCC-CEEEEEEEEecCCCCC
Confidence            799999999999999999999999999999999999999999999999999999999999876 55552   24566666


Q ss_pred             ec
Q psy8679         214 IR  215 (221)
Q Consensus       214 LR  215 (221)
                      =|
T Consensus        83 p~   84 (85)
T d2apoa1          83 PR   84 (85)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Hypothetical protein Ta1423, C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=1.5e-06  Score=62.56  Aligned_cols=71  Identities=17%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             CcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEE
Q psy8679         134 AQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGF  205 (221)
Q Consensus       134 ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~  205 (221)
                      .|..|+|+..++..-+.|.+++-.||.++.+++..++-|.|++.++.|+|.|.+..|++|++.... ++++.
T Consensus         1 ~k~~I~Vd~gA~~~l~~GA~L~~pGV~~~~~~~~~gd~V~I~~~~g~~iavG~a~~ss~e~~~~~~-G~~v~   71 (85)
T d1q7ha1           1 SRNIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGEVMATKR-GKAAR   71 (85)
T ss_dssp             SSSEEEECTTTHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTSCEEEEEEESSCHHHHHHHCC-SEEEE
T ss_pred             CCCEEEECcCHHHHHHCCCCcCCCccEECCCCCCCCCEEEEEeCCCCEEEEEEEEeCHHHHHhhcC-CEEEE
Confidence            367899999999999999999999999999999999999999999999999999999999998864 55544

>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.90  E-value=4.1e-06  Score=60.74  Aligned_cols=62  Identities=19%  Similarity=0.143  Sum_probs=58.9

Q ss_pred             eEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCC
Q psy8679         137 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADP  199 (221)
Q Consensus       137 Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp  199 (221)
                      ||||+.++...-++|.+++..||..+. ++..++-|.|++.++.++|+|.+..++++++++..
T Consensus         3 ~VvV~~~A~~~i~~Ga~l~~pGI~~~d-~~~~Gd~V~I~~~~g~~iaiG~a~~~S~ei~~~~K   64 (81)
T d1r3ea1           3 RVVVHQESTKMILNGSQIHLEMLKEWD-GFKKGEVVRVFNEEGRLLALAEAERNSSFLETLRK   64 (81)
T ss_dssp             EEECCTTTHHHHTTTCCEESSSCCEEC-CCCTTCEEEEECSSSCEEEEEEESSCTTCCCCSCC
T ss_pred             EEEEccchHHHHhcCCccccccceeec-ccCCCCEEEEEeCCCCEEEEEEEecCHHHHHHhhc
Confidence            799999999999999999999999996 79999999999999999999999999999988754

>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525, C-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Hypothetical protein APE0525, C-terminal domain
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.96  E-value=0.0004  Score=50.49  Aligned_cols=62  Identities=18%  Similarity=0.183  Sum_probs=56.3

Q ss_pred             ceEEEccCccceeecccccccccceeecccCCCcceEEEEecC-CCeeeEEeeeechhHhhhc
Q psy8679         136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMN-DVPLGFGVAAKSTAECKLA  197 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~n-d~pLGFGv~akst~~~~~~  197 (221)
                      -.|.|++.|...-+.|.+++-.+|..++.++++++-|.|.+.+ +.||+.|.+..|++|+++.
T Consensus         2 g~i~vd~gA~~al~~GA~Lm~pGIv~~~g~f~~Gd~V~I~~~~~~~~iAvG~~~~~s~ei~~~   64 (93)
T d2cx1a1           2 GVVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMVGVAEVDSSALEKL   64 (93)
T ss_dssp             EEEEECHHHHHHHHTTCCEEGGGEEEEEECCCTTCEEEEEETTTTEEEEEEEESSCHHHHHHH
T ss_pred             CEEEECcCHHHHHHCCCCcCccccEECCCCCCCCCEEEEEECCCCeEEEEEEEecCHHHHHHH
Confidence            3577888888888899999999999999999999999999974 7899999999999999864

>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Uncharacterized protein AF0587
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.82  E-value=0.0015  Score=45.42  Aligned_cols=62  Identities=24%  Similarity=0.249  Sum_probs=50.8

Q ss_pred             ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEE
Q psy8679         136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGF  205 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~  205 (221)
                      |.|+|.+     |+=-.+|+-.||.+.++++..++-|+|.  ++.|+|.|.+.-|+.|+..++. |++|.
T Consensus         1 y~V~idd-----fv~~G~v~apgI~~~d~~I~~GD~V~V~--~ge~vavG~A~ms~~Em~~~~k-G~aVk   62 (68)
T d2q07a1           1 YTVEIGD-----FEVKGTIFAGGVLRADEKIRPNDVVVFH--NSRIFGVGLAAMSGKEMAGSEK-GIAIN   62 (68)
T ss_dssp             SEEEECS-----SCCCSEEEGGGEEEECTTCCTTCEEEEE--CSSCEEEEEESSCHHHHSCC---CEEEE
T ss_pred             CEEEECC-----cccCCcccccchhhhCCCCCCCCEEEEE--eCCEEEEEEEeeCHHHHhhcCC-cEEEE
Confidence            5677774     4444499999999999999999999997  5899999999999999999886 56553

>d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Hypothetical RNA methyltransferase domain (HRMD)
domain: Hypothetical protein PH1915, N-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.30  E-value=0.00094  Score=45.94  Aligned_cols=56  Identities=25%  Similarity=0.253  Sum_probs=50.2

Q ss_pred             ceEEEccCccceeecccc-cccccceeecccCCCcceEEEEecCCCeeeEEeeeech
Q psy8679         136 FKVWVKPQAEQQFLYGHN-ILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKST  191 (221)
Q Consensus       136 ~Kvwvk~~gE~~FLYGn~-V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst  191 (221)
                      -||+|+|.++....=|.. |+..+|.+++.+.+..+-|-|++.++.+||.|....++
T Consensus         2 ~~v~l~~~a~~~l~~g~pwi~~~~i~~~~g~~~~Gd~V~v~d~~g~~lg~G~~n~~S   58 (72)
T d2as0a1           2 ARVVVDAQAARAIGKGAMIVFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFANPNS   58 (72)
T ss_dssp             CEEEECHHHHHHHHTTCCEEEGGGEEEEESCCCTTCEEEEEETTCCEEEEEEECTTS
T ss_pred             CEEEECHhHHHHHHcCCCeECHhhcccccCCcCCCcEEEEEeCCCcEEEEEEECCCC
Confidence            379999999999988866 99999999999999999999999999999999985433