Psyllid ID: psy8685

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL
Secondary Structure (PSIPRED)
cccEEEEEEccccccccccEEEEEEEEEccccEEHHHHHHHHHHHHHHHEEEEcccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccEEEEEEEEEc
Coil and Loop (DISEMBL)
mpgkknevqyeccpetyvDITFTIQIRRRTLYYFFNLIVPCVLISSMallgftlppdsgekLTLVINVLL
Flexible Loop (DISEMBL)
mpgkknevqyeccPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFtlppdsgeklTLVINVLL
Low Complexity Region (SEG)
MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL
Disordered region (IsUnstruct)
*******VQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINV**
Disordered Region (DISOPRED)
**GKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL
Disordered Region (DISEMBL)
********QYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL
Disordered Region (DISPRO)
***KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
Q05941	502	Neuronal acetylcholine re	yes	N/A	1.0	0.139	0.642	2e-21
P49582	502	Neuronal acetylcholine re	yes	N/A	1.0	0.139	0.642	2e-21
Q866A2	502	Neuronal acetylcholine re	yes	N/A	1.0	0.139	0.642	5e-21
P36544	502	Neuronal acetylcholine re	no	N/A	1.0	0.139	0.642	6e-21
Q494W8	412	CHRNA7-FAM7A fusion prote	no	N/A	1.0	0.169	0.642	7e-21
P54131	499	Neuronal acetylcholine re	yes	N/A	0.971	0.136	0.661	2e-20
P22770	502	Neuronal acetylcholine re	no	N/A	1.0	0.139	0.657	3e-20
A8WQK3	499	Acetylcholine receptor su	N/A	N/A	0.957	0.134	0.641	6e-20
P48180	498	Acetylcholine receptor su	no	N/A	0.957	0.134	0.641	7e-20
Q8JFN7	572	Neuronal acetylcholine re	N/A	N/A	1.0	0.122	0.542	2e-18

>sp|Q05941|ACHA7_RAT Neuronal acetylcholine receptor subunit alpha-7 OS=Rattus norvegicus GN=Chrna7 PE=1 SV=2

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           +PGK+NE  YECC E Y D+T+T+ +RRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct: 201 IPGKRNEKFYECCKEPYPDVTYTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 260

Query: 61  KLTLVINVLL 70
           K++L I VLL
Sbjct: 261 KISLGITVLL 270

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.
Rattus norvegicus (taxid: 10116)

>sp|P49582|ACHA7_MOUSE Neuronal acetylcholine receptor subunit alpha-7 OS=Mus musculus GN=Chrna7 PE=2 SV=1

 Score =  100 bits (249), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           +PGK+NE  YECC E Y D+T+T+ +RRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct: 201 IPGKRNEKFYECCKEPYPDVTYTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 260

Query: 61  KLTLVINVLL 70
           K++L I VLL
Sbjct: 261 KISLGITVLL 270

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Mus musculus (taxid: 10090)

>sp|Q866A2|ACHA7_MACMU Neuronal acetylcholine receptor subunit alpha-7 OS=Macaca mulatta GN=CHRNA7 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           +PGK++E  YECC E Y D+TFT+ +RRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct: 201 IPGKRSEKFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 260

Query: 61  KLTLVINVLL 70
           K++L I VLL
Sbjct: 261 KISLGITVLL 270

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Macaca mulatta (taxid: 9544)

>sp|P36544|ACHA7_HUMAN Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           +PGK++E  YECC E Y D+TFT+ +RRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct: 201 IPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 260

Query: 61  KLTLVINVLL 70
           K++L I VLL
Sbjct: 261 KISLGITVLL 270

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Homo sapiens (taxid: 9606)

>sp|Q494W8|CRFM7_HUMAN CHRNA7-FAM7A fusion protein OS=Homo sapiens GN=CHRFAM7A PE=2 SV=1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           +PGK++E  YECC E Y D+TFT+ +RRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct: 111 IPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 170

Query: 61  KLTLVINVLL 70
           K++L I VLL
Sbjct: 171 KISLGITVLL 180

Homo sapiens (taxid: 9606)

>sp|P54131|ACHA7_BOVIN Neuronal acetylcholine receptor subunit alpha-7 OS=Bos taurus GN=CHRNA7 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/68 (66%), Positives = 55/68 (80%)

Query: 3   GKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 62
           GK++E  YECC E Y D+TFT+ IRRRTLYY  NL++PCVLIS++ALL F LP DSGEK+
Sbjct: 200 GKRSEKFYECCKEPYPDVTFTVSIRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKI 259

Query: 63  TLVINVLL 70
           +L I VLL
Sbjct: 260 SLGITVLL 267

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Bos taurus (taxid: 9913)

>sp|P22770|ACHA7_CHICK Neuronal acetylcholine receptor subunit alpha-7 OS=Gallus gallus GN=CHRNA7 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 56/70 (80%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           +PGK+ E  YECC E Y DITFT+ +RRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct: 201 IPGKRTESFYECCKEPYPDITFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 260

Query: 61  KLTLVINVLL 70
           K++L I VLL
Sbjct: 261 KISLGITVLL 270

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|A8WQK3|ACH1_CAEBR Acetylcholine receptor subunit alpha-type acr-16 OS=Caenorhabditis briggsae GN=acr-16 PE=3 SV=2

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 54/67 (80%)

Query: 4   KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLT 63
           ++NE  Y+CCPE Y D+ F + +RRRTLYY FNLI+PC+L + M LLGFTLPPD+GEK+T
Sbjct: 203 ERNEKFYDCCPEPYPDVHFYLHMRRRTLYYGFNLIMPCILTTLMTLLGFTLPPDAGEKIT 262

Query: 64  LVINVLL 70
           L I VLL
Sbjct: 263 LQITVLL 269

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. A subunit of the levamisole-insensitive nicotinic receptor.

Caenorhabditis briggsae (taxid: 6238)

>sp|P48180|ACH1_CAEEL Acetylcholine receptor subunit alpha-type acr-16 OS=Caenorhabditis elegans GN=acr-16 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 54/67 (80%)

Query: 4   KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLT 63
           ++NE  Y+CCPE Y D+ F + +RRRTLYY FNLI+PC+L + M LLGFTLPPD+GEK+T
Sbjct: 203 ERNEKFYDCCPEPYPDVHFYLHMRRRTLYYGFNLIMPCILTTLMTLLGFTLPPDAGEKIT 262

Query: 64  LVINVLL 70
           L I VLL
Sbjct: 263 LQITVLL 269

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane (By similarity). A subunit of the levamisole-insensitive nicotinic receptor.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8JFN7|ACH91_ONCMY Neuronal acetylcholine receptor subunit alpha-9-I OS=Oncorhynchus mykiss GN=nachra9 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 53/70 (75%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MP  +N + Y CC + Y DIT+T+ ++RR+L+Y FNL++PC LIS +A LGF LP DSGE
Sbjct: 202 MPAVRNVIMYGCCSDPYPDITYTLHLKRRSLFYIFNLLLPCFLISFLAPLGFYLPADSGE 261

Query: 61  KLTLVINVLL 70
           K++L + VLL
Sbjct: 262 KVSLGVTVLL 271

Oncorhynchus mykiss (taxid: 8022)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
262091808	503	nicotinic acetylcholine receptor alpha 6	1.0	0.139	0.842	2e-29
157117637	501	nicotinic acetylcholine receptor subunit	1.0	0.139	0.871	3e-29
195118907	537	GI18200 [Drosophila mojavensis] gi|19391	1.0	0.130	0.871	5e-29
195053093	536	GH13056 [Drosophila grimshawi] gi|193900	1.0	0.130	0.871	5e-29
195385018	536	GJ14694 [Drosophila virilis] gi|19414766	1.0	0.130	0.871	5e-29
119113071	490	AGAP002152-PB [Anopheles gambiae str. PE	1.0	0.142	0.871	6e-29
267925197	481	nicotinic acetylcholine receptor subunit	1.0	0.145	0.857	6e-29
380014167	527	PREDICTED: neuronal acetylcholine recept	1.0	0.132	0.857	6e-29
350413781	544	PREDICTED: neuronal acetylcholine recept	1.0	0.128	0.857	6e-29
119369844	461	nicotinic acetylcholine receptor subunit	1.0	0.151	0.857	6e-29

>gi|262091808|gb|ACY25395.1| nicotinic acetylcholine receptor alpha 6 precursor variant [Plutella xylostella]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/70 (84%), Positives = 63/70 (90%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MPGKKN + Y CCPE YVD+TFTI IRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct: 201 MPGKKNTITYACCPEPYVDVTFTIMIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 260

Query: 61  KLTLVINVLL 70
           KLTL + +LL
Sbjct: 261 KLTLGVTILL 270

Source: Plutella xylostella

Species: Plutella xylostella

Genus: Plutella

Family: Plutellidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117637|ref|XP_001658863.1| nicotinic acetylcholine receptor subunit [Aedes aegypti] gi|108875952|gb|EAT40177.1| AAEL008055-PA, partial [Aedes aegypti]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MPGKKN + Y+CCPE YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct: 213 MPGKKNTITYQCCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 272

Query: 61  KLTLVINVLL 70
           KLTL + +LL
Sbjct: 273 KLTLGVTILL 282

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118907|ref|XP_002003973.1| GI18200 [Drosophila mojavensis] gi|193914548|gb|EDW13415.1| GI18200 [Drosophila mojavensis]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MPGKKN + Y+CCPE YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct: 222 MPGKKNTIVYQCCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 281

Query: 61  KLTLVINVLL 70
           KLTL + +LL
Sbjct: 282 KLTLGVTILL 291

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195053093|ref|XP_001993465.1| GH13056 [Drosophila grimshawi] gi|193900524|gb|EDV99390.1| GH13056 [Drosophila grimshawi]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MPGKKN + Y+CCPE YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct: 221 MPGKKNTIVYQCCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 280

Query: 61  KLTLVINVLL 70
           KLTL + +LL
Sbjct: 281 KLTLGVTILL 290

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385018|ref|XP_002051205.1| GJ14694 [Drosophila virilis] gi|194147662|gb|EDW63360.1| GJ14694 [Drosophila virilis]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MPGKKN + Y+CCPE YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct: 221 MPGKKNTIVYQCCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 280

Query: 61  KLTLVINVLL 70
           KLTL + +LL
Sbjct: 281 KLTLGVTILL 290

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119113071|ref|XP_308042.3| AGAP002152-PB [Anopheles gambiae str. PEST] gi|51873087|gb|AAU12509.1| nicotinic acetylcholine receptor subunit alpha 6 [Anopheles gambiae] gi|116132873|gb|EAA03696.4| AGAP002152-PB [Anopheles gambiae str. PEST]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MPGKKN + Y+CCPE YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct: 202 MPGKKNTITYQCCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 261

Query: 61  KLTLVINVLL 70
           KLTL + +LL
Sbjct: 262 KLTLGVTILL 271

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|267925197|gb|ACY82691.1| nicotinic acetylcholine receptor subunit alpha 6 [Nasonia vitripennis]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 65/70 (92%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MPGKKN + Y+CCPE YVD+TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct: 186 MPGKKNTIVYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 245

Query: 61  KLTLVINVLL 70
           KLTL + +LL
Sbjct: 246 KLTLGVTILL 255

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014167|ref|XP_003691111.1| PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Apis florea]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 65/70 (92%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MPGKKN + Y+CCPE YVD+TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct: 231 MPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 290

Query: 61  KLTLVINVLL 70
           KLTL + +LL
Sbjct: 291 KLTLGVTILL 300

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413781|ref|XP_003490109.1| PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Bombus impatiens]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 65/70 (92%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MPGKKN + Y+CCPE YVD+TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct: 219 MPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 278

Query: 61  KLTLVINVLL 70
           KLTL + +LL
Sbjct: 279 KLTLGVTILL 288

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119369844|gb|ABL67938.1| nicotinic acetylcholine receptor subunit alpha 6 transcript variant 2, partial [Apis mellifera]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 65/70 (92%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
           MPGKKN + Y+CCPE YVD+TFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct: 165 MPGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 224

Query: 61  KLTLVINVLL 70
           KLTL + +LL
Sbjct: 225 KLTLGVTILL 234

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0032151	523	nAcRalpha-30D "nicotinic Acety	1.0	0.133	0.871	6.6e-29
FB|FBgn0086778	564	gfA "giant fibre A" [Drosophil	1.0	0.124	0.771	2.6e-26
FB|FBgn0028875	808	nAcRalpha-34E "nicotinic Acety	1.0	0.086	0.771	5.3e-26
UNIPROTKB|F1SNR6	390	CHRNA7 "Uncharacterized protei	1.0	0.179	0.671	2.7e-21
UNIPROTKB|Q03481	511	LOC396120 "Alpha8 subunit of n	1.0	0.136	0.657	1.2e-20
UNIPROTKB|F1PU41	440	CHRNA7 "Uncharacterized protei	1.0	0.159	0.657	2e-20
MGI|MGI:99779	502	Chrna7 "cholinergic receptor,	1.0	0.139	0.642	4.1e-20
RGD|2348	502	Chrna7 "cholinergic receptor,	1.0	0.139	0.642	4.1e-20
UNIPROTKB|F1M9W0	502	Chrna7 "Neuronal acetylcholine	1.0	0.139	0.642	4.1e-20
UNIPROTKB|Q494W8	412	CHRFAM7A "CHRNA7-FAM7A fusion	1.0	0.169	0.642	4.2e-20

FB|FBgn0032151 nAcRalpha-30D "nicotinic Acetylcholine Receptor alpha 30D" [Drosophila melanogaster (taxid:7227)]

 Score = 325 (119.5 bits), Expect = 6.6e-29, P = 6.6e-29
 Identities = 61/70 (87%), Positives = 64/70 (91%)

Query:     1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
             MPGKKN + Y CCPE YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE
Sbjct:   208 MPGKKNTIVYACCPEPYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 267

Query:    61 KLTLVINVLL 70
             KLTL + +LL
Sbjct:   268 KLTLGVTILL 277

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;IDA;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;IDA;NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0017085 "response to insecticide" evidence=IMP;NAS

GO:0016021 "integral to membrane" evidence=IDA

GO:0046716 "muscle cell homeostasis" evidence=IMP

FB|FBgn0086778 gfA "giant fibre A" [Drosophila melanogaster (taxid:7227)]

 Score = 303 (111.7 bits), Expect = 2.6e-26, P = 2.6e-26
 Identities = 54/70 (77%), Positives = 63/70 (90%)

Query:     1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
             +PGK+NE+ Y CCPE Y+DITF I IRR+TLYYFFNLIVPCVLI+SMALLGFTLPPDSGE
Sbjct:   239 VPGKRNEIYYNCCPEPYIDITFAILIRRKTLYYFFNLIVPCVLIASMALLGFTLPPDSGE 298

Query:    61 KLTLVINVLL 70
             KL+L + +LL
Sbjct:   299 KLSLGVTILL 308

GO:0007630 "jump response" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IMP

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0060079 "regulation of excitatory postsynaptic membrane potential" evidence=IMP

GO:0007632 "visual behavior" evidence=IMP

GO:0030425 "dendrite" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

FB|FBgn0028875 nAcRalpha-34E "nicotinic Acetylcholine Receptor alpha 34E" [Drosophila melanogaster (taxid:7227)]

 Score = 304 (112.1 bits), Expect = 5.3e-26, P = 5.3e-26
 Identities = 54/70 (77%), Positives = 63/70 (90%)

Query:     1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
             +PGK+NE+ Y CCPE Y+DITF I IRRRTLYYFFNLI+PCVLI+SMALLGFTLPPDSGE
Sbjct:   491 VPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPPDSGE 550

Query:    61 KLTLVINVLL 70
             KL+L + +LL
Sbjct:   551 KLSLGVTILL 560

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;IDA;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;IDA;NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042166 "acetylcholine binding" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

UNIPROTKB|F1SNR6 CHRNA7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 251 (93.4 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 47/70 (67%), Positives = 57/70 (81%)

Query:     1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
             +PGK+NE  YECC E Y D+TFT+ IRRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct:    89 IPGKRNEKFYECCKEPYPDVTFTVTIRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 148

Query:    61 KLTLVINVLL 70
             K++L I VLL
Sbjct:   149 KISLGITVLL 158

GO:0060112 "generation of ovulation cycle rhythm" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048149 "behavioral response to ethanol" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

GO:0042110 "T cell activation" evidence=IEA

GO:0035095 "behavioral response to nicotine" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0032715 "negative regulation of interleukin-6 production" evidence=IEA

GO:0032691 "negative regulation of interleukin-1 beta production" evidence=IEA

GO:0032225 "regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0032094 "response to food" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0014061 "regulation of norepinephrine secretion" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008306 "associative learning" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0007271 "synaptic transmission, cholinergic" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0001988 "positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|Q03481 LOC396120 "Alpha8 subunit of nicotinic acetylcholine receptor" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 46/70 (65%), Positives = 57/70 (81%)

Query:     1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
             +PGK+NE+ YECC E Y D+T+TI +RRRTLYY  NL++PCVLIS +ALL F LP DSGE
Sbjct:   209 VPGKRNELYYECCKEPYPDVTYTITMRRRTLYYGLNLLIPCVLISGLALLVFLLPADSGE 268

Query:    61 KLTLVINVLL 70
             K++L I VLL
Sbjct:   269 KISLGITVLL 278

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1PU41 CHRNA7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 246 (91.7 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 46/70 (65%), Positives = 57/70 (81%)

Query:     1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
             +PGK++E  YECC E Y D+TFT+ IRRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct:   139 IPGKRSEKFYECCKEPYPDVTFTVTIRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 198

Query:    61 KLTLVINVLL 70
             K++L I VLL
Sbjct:   199 KISLGITVLL 208

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

MGI|MGI:99779 Chrna7 "cholinergic receptor, nicotinic, alpha polypeptide 7" [Mus musculus (taxid:10090)]

 Score = 245 (91.3 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query:     1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
             +PGK+NE  YECC E Y D+T+T+ +RRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct:   201 IPGKRNEKFYECCKEPYPDVTYTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 260

Query:    61 KLTLVINVLL 70
             K++L I VLL
Sbjct:   261 KISLGITVLL 270

GO:0000187 "activation of MAPK activity" evidence=ISO

GO:0001540 "beta-amyloid binding" evidence=ISO

GO:0001666 "response to hypoxia" evidence=ISO

GO:0001988 "positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure" evidence=IMP

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISO;IDA;IMP

GO:0005216 "ion channel activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005892 "acetylcholine-gated channel complex" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IMP

GO:0006812 "cation transport" evidence=IDA;IMP

GO:0006816 "calcium ion transport" evidence=ISO

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0006897 "endocytosis" evidence=IMP

GO:0007165 "signal transduction" evidence=ISO

GO:0007271 "synaptic transmission, cholinergic" evidence=ISO;IMP

GO:0007613 "memory" evidence=IMP

GO:0008144 "drug binding" evidence=ISO

GO:0008179 "adenylate cyclase binding" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0008306 "associative learning" evidence=IGI;IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0014061 "regulation of norepinephrine secretion" evidence=IMP

GO:0014069 "postsynaptic density" evidence=ISO

GO:0015464 "acetylcholine receptor activity" evidence=ISO

GO:0015643 "toxic substance binding" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0017081 "chloride channel regulator activity" evidence=ISO

GO:0019228 "regulation of action potential in neuron" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030317 "sperm motility" evidence=IMP

GO:0030424 "axon" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0030426 "growth cone" evidence=ISO

GO:0032094 "response to food" evidence=IMP

GO:0032225 "regulation of synaptic transmission, dopaminergic" evidence=IMP

GO:0032279 "asymmetric synapse" evidence=ISO

GO:0032691 "negative regulation of interleukin-1 beta production" evidence=IMP

GO:0032715 "negative regulation of interleukin-6 production" evidence=IMP

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=ISO;IMP

GO:0034220 "ion transmembrane transport" evidence=ISO;IDA;IMP

GO:0035094 "response to nicotine" evidence=ISO;IMP

GO:0035095 "behavioral response to nicotine" evidence=IGI

GO:0042110 "T cell activation" evidence=IMP

GO:0042113 "B cell activation" evidence=IMP

GO:0042166 "acetylcholine binding" evidence=ISO

GO:0042221 "response to chemical stimulus" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=ISO;IMP

GO:0042698 "ovulation cycle" evidence=IMP

GO:0042734 "presynaptic membrane" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0045471 "response to ethanol" evidence=IMP

GO:0045766 "positive regulation of angiogenesis" evidence=ISO

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0050727 "regulation of inflammatory response" evidence=IMP

GO:0050728 "negative regulation of inflammatory response" evidence=IMP

GO:0050890 "cognition" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

GO:0060112 "generation of ovulation cycle rhythm" evidence=IMP

GO:0097110 "scaffold protein binding" evidence=ISO

RGD|2348 Chrna7 "cholinergic receptor, nicotinic, alpha 7 (neuronal)" [Rattus norvegicus (taxid:10116)]

 Score = 245 (91.3 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query:     1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
             +PGK+NE  YECC E Y D+T+T+ +RRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct:   201 IPGKRNEKFYECCKEPYPDVTYTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 260

Query:    61 KLTLVINVLL 70
             K++L I VLL
Sbjct:   261 KISLGITVLL 270

GO:0000187 "activation of MAPK activity" evidence=ISO

GO:0001540 "beta-amyloid binding" evidence=ISO

GO:0001666 "response to hypoxia" evidence=ISO

GO:0001988 "positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure" evidence=IEA;ISO

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISO;IMP;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005892 "acetylcholine-gated channel complex" evidence=ISO;IDA;TAS

GO:0006811 "ion transport" evidence=ISO

GO:0006812 "cation transport" evidence=ISO

GO:0006816 "calcium ion transport" evidence=ISO;IMP

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0006897 "endocytosis" evidence=IEA;ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0007271 "synaptic transmission, cholinergic" evidence=ISO;IMP

GO:0007613 "memory" evidence=IEA;ISO

GO:0008144 "drug binding" evidence=IDA

GO:0008179 "adenylate cyclase binding" evidence=IPI

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0008306 "associative learning" evidence=IEA;ISO

GO:0009897 "external side of plasma membrane" evidence=IEA;ISO

GO:0014061 "regulation of norepinephrine secretion" evidence=IEA;ISO

GO:0014069 "postsynaptic density" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=ISO

GO:0015643 "toxic substance binding" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=IEA;ISO

GO:0017081 "chloride channel regulator activity" evidence=ISO

GO:0019228 "regulation of action potential in neuron" evidence=IDA;IMP

GO:0019901 "protein kinase binding" evidence=IPI

GO:0030054 "cell junction" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA;ISO

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0032094 "response to food" evidence=IEA;ISO

GO:0032225 "regulation of synaptic transmission, dopaminergic" evidence=IEA;ISO

GO:0032279 "asymmetric synapse" evidence=IDA

GO:0032691 "negative regulation of interleukin-1 beta production" evidence=IEA;ISO

GO:0032715 "negative regulation of interleukin-6 production" evidence=IEA;ISO

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA;ISO

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0035094 "response to nicotine" evidence=ISO

GO:0035095 "behavioral response to nicotine" evidence=IEA;ISO

GO:0042110 "T cell activation" evidence=IEA;ISO

GO:0042113 "B cell activation" evidence=IEA;ISO

GO:0042166 "acetylcholine binding" evidence=ISO;IDA;IMP

GO:0042221 "response to chemical stimulus" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=ISO;IMP;IDA

GO:0042416 "dopamine biosynthetic process" evidence=IEP

GO:0042698 "ovulation cycle" evidence=ISO

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0045471 "response to ethanol" evidence=ISO

GO:0045766 "positive regulation of angiogenesis" evidence=ISO

GO:0048149 "behavioral response to ethanol" evidence=IEA;ISO

GO:0050727 "regulation of inflammatory response" evidence=ISO

GO:0050728 "negative regulation of inflammatory response" evidence=IEA;ISO

GO:0050890 "cognition" evidence=ISO

GO:0051117 "ATPase binding" evidence=IDA

GO:0060112 "generation of ovulation cycle rhythm" evidence=IEA;ISO

GO:0097110 "scaffold protein binding" evidence=IDA

UNIPROTKB|F1M9W0 Chrna7 "Neuronal acetylcholine receptor subunit alpha-7" [Rattus norvegicus (taxid:10116)]

 Score = 245 (91.3 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query:     1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
             +PGK+NE  YECC E Y D+T+T+ +RRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct:   201 IPGKRNEKFYECCKEPYPDVTYTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 260

Query:    61 KLTLVINVLL 70
             K++L I VLL
Sbjct:   261 KISLGITVLL 270

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|Q494W8 CHRFAM7A "CHRNA7-FAM7A fusion protein" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 4.2e-20, P = 4.2e-20
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query:     1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
             +PGK++E  YECC E Y D+TFT+ +RRRTLYY  NL++PCVLIS++ALL F LP DSGE
Sbjct:   111 IPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGE 170

Query:    61 KLTLVINVLL 70
             K++L I VLL
Sbjct:   171 KISLGITVLL 180

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P54131	ACHA7_BOVIN	No assigned EC number	0.6617	0.9714	0.1362	yes	N/A
Q05941	ACHA7_RAT	No assigned EC number	0.6428	1.0	0.1394	yes	N/A
P49582	ACHA7_MOUSE	No assigned EC number	0.6428	1.0	0.1394	yes	N/A
Q866A2	ACHA7_MACMU	No assigned EC number	0.6428	1.0	0.1394	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	4e-16
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	4e-09
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	1e-06

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 70.1 bits (172), Expect = 4e-16
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 2   PGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD-SGE 60
            G +     E     Y  +TF+  +RRR LYY   L +P +LI  ++ + F LP D SG 
Sbjct: 213 YGTRYC-TSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGA 271

Query: 61  KLTLVINVLL 70
           +++L I  LL
Sbjct: 272 RVSLGITTLL 281

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 50.0 bits (120), Expect = 4e-09
 Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 1/35 (2%)

Query: 37 LIVPCVLISSMALLGFTLPPDSG-EKLTLVINVLL 70
          LI+PCVLIS ++ L F LP D+G EK+TL I  LL
Sbjct: 1  LIIPCVLISFLSWLVFWLPADAGPEKVTLGITTLL 35

This family includes the four transmembrane helices that form the ion channel. Length = 228

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score = 42.6 bits (101), Expect = 1e-06
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRT 30
           +P K+NE  Y C  E Y D+TF   +RR+ 
Sbjct: 186 VPAKRNEYPYGCYSELYPDVTFYFVLRRKP 215

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
KOG3646|consensus	486		99.81
TIGR00860	459	LIC Cation transporter family protein. selective w	99.77
KOG3645|consensus	449		99.73
KOG3643|consensus	459		99.44
KOG3644|consensus	457		99.44
KOG3642|consensus	466		99.35
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	98.98
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	95.6

>KOG3646|consensus

Probab=99.81  E-value=4.2e-21  Score=133.63  Aligned_cols=69  Identities=67%  Similarity=1.220  Sum_probs=66.7

Q ss_pred             CceeeeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685           2 PGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus         2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      +++|.+.+|+|||++|.+++|++.+|||..||-+|+++||+++.++++++|.+|||+|||+++++|++|
T Consensus       207 pakr~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilL  275 (486)
T KOG3646|consen  207 PAKREEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILL  275 (486)
T ss_pred             cccceeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHH
Confidence            568999999999999999999999999999999999999999999999999999999999999999875

>TIGR00860 LIC Cation transporter family protein

Probab=99.77  E-value=8.5e-19  Score=122.61  Aligned_cols=62  Identities=39%  Similarity=0.709  Sum_probs=59.8

Q ss_pred             ecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCC-CCceEEEEEeEeC
Q psy8685           9 QYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVINVLL   70 (70)
Q Consensus         9 ~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~-sger~~l~it~lL   70 (70)
                      .|.||+++|+++++++.+||+++||++++++||+++++++|++||+|++ +|||+++++|+||
T Consensus       219 ~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lL  281 (459)
T TIGR00860       219 TSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLL  281 (459)
T ss_pred             ecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHH
Confidence            6889999999999999999999999999999999999999999999999 6999999999875

selective while glycine receptors are anion selective).

>KOG3645|consensus

Probab=99.73  E-value=3.6e-18  Score=119.25  Aligned_cols=69  Identities=61%  Similarity=1.083  Sum_probs=63.7

Q ss_pred             CceeeeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCC-ceEEEEEeEeC
Q psy8685           2 PGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG-EKLTLVINVLL   70 (70)
Q Consensus         2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sg-er~~l~it~lL   70 (70)
                      .++++...|+||++.|++++|.+.+||||.||++++++||++++++++++||+|+++| ||+++++++||
T Consensus       211 ~~~~~~~~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll  280 (449)
T KOG3645|consen  211 TVVREEKKYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLL  280 (449)
T ss_pred             eeEEeecccCCCCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHH
Confidence            3467777888999999999999999999999999999999999999999999998885 99999999875

>KOG3643|consensus

Probab=99.44  E-value=1e-13  Score=96.66  Aligned_cols=57  Identities=23%  Similarity=0.504  Sum_probs=55.4

Q ss_pred             CCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCC-CceEEEEEeEeC
Q psy8685          14 PETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL   70 (70)
Q Consensus        14 ~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~s-ger~~l~it~lL   70 (70)
                      .|.|+.+...|.++|+.+||++++++|+++++++||++||+.-|+ .+|+.+|||++|
T Consensus       226 TG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVL  283 (459)
T KOG3643|consen  226 TGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVL  283 (459)
T ss_pred             cccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHH
Confidence            789999999999999999999999999999999999999999998 999999999876

>KOG3644|consensus

Probab=99.44  E-value=2.3e-14  Score=100.75  Aligned_cols=57  Identities=28%  Similarity=0.522  Sum_probs=54.9

Q ss_pred             CCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCC-CceEEEEEeEeC
Q psy8685          14 PETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL   70 (70)
Q Consensus        14 ~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~s-ger~~l~it~lL   70 (70)
                      .|.|++++.+++++|+.+||+++.++|+.+++++||++|||++++ .+|+++|+|+||
T Consensus       235 ~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLL  292 (457)
T KOG3644|consen  235 TGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLL  292 (457)
T ss_pred             CcceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHH
Confidence            578999999999999999999999999999999999999999999 899999999886

>KOG3642|consensus

Probab=99.35  E-value=4.1e-13  Score=93.94  Aligned_cols=58  Identities=21%  Similarity=0.493  Sum_probs=55.4

Q ss_pred             CCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCC-CceEEEEEeEeC
Q psy8685          13 CPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL   70 (70)
Q Consensus        13 ~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~s-ger~~l~it~lL   70 (70)
                      ..|.|+.++.+|.++|+.+||++|.++||++.++|||++||+..|+ .+|..+|||++|
T Consensus       233 ~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVL  291 (466)
T KOG3642|consen  233 SSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVL  291 (466)
T ss_pred             cCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeee
Confidence            3578999999999999999999999999999999999999999999 999999999986

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=98.98  E-value=1.2e-12  Score=79.46  Aligned_cols=34  Identities=56%  Similarity=1.027  Sum_probs=31.6

Q ss_pred             EeehhHHHHHHhhheeecCCCCC-ceEEEEEeEeC
Q psy8685          37 LIVPCVLISSMALLGFTLPPDSG-EKLTLVINVLL   70 (70)
Q Consensus        37 ~i~P~~ll~~ls~~~f~lp~~sg-er~~l~it~lL   70 (70)
                      +++||+++++++|++||+|+++| ||+++|||+||
T Consensus         1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL   35 (237)
T PF02932_consen    1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLL   35 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHH
T ss_pred             CeehHHHHHHHHHhheEeCccccccccccchhHHH
Confidence            36899999999999999999998 99999999875

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=95.60  E-value=0.027  Score=35.40  Aligned_cols=27  Identities=33%  Similarity=0.754  Sum_probs=22.9

Q ss_pred             eeeeeecccCCCC-eeeEEEEEEEeeec
Q psy8685           4 KKNEVQYECCPET-YVDITFTIQIRRRT   30 (70)
Q Consensus         4 ~~~~~~y~~~~~~-~~~i~~~~~l~R~~   30 (70)
                      .++...++||++. |+.+.+++.++|+|
T Consensus       190 ~~~~~~~~~~~~~~ys~l~~~~~l~R~~  217 (217)
T PF02931_consen  190 TRRETTYGCYNEPTYSMLSFTFTLKRRP  217 (217)
T ss_dssp             EEEEEEESTSSSCSEEEEEEEEEEEEST
T ss_pred             EEEEEccCCcCCCCEeeEEEEEEEEECc
Confidence            4555668888886 99999999999986

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	70
2bg9_A	370	Refined Structure Of The Nicotinic Acetylcholine Re		8e-14
4aq5_A	461	Gating Movement In Acetylcholine Receptor Analysed		1e-13
2bg9_C	369	Refined Structure Of The Nicotinic Acetylcholine Re		7e-11
4aq5_C	522	Gating Movement In Acetylcholine Receptor Analysed		7e-11
4aq5_B	493	Gating Movement In Acetylcholine Receptor Analysed		1e-10
2bg9_B	370	Refined Structure Of The Nicotinic Acetylcholine Re		1e-10
2ksr_A	164	Nmr Structures Of Tm Domain Of The N-Acetylcholine		5e-09
2lm2_A	137	Nmr Structures Of The Transmembrane Domains Of The		3e-07
2bg9_E	370	Refined Structure Of The Nicotinic Acetylcholine Re		3e-07
4aq5_E	488	Gating Movement In Acetylcholine Receptor Analysed		4e-07
1oed_C	260	Structure Of Acetylcholine Receptor Pore From Elect		8e-07
2k58_B	35	Nmr Structures Of The First Transmembrane Domain Of		8e-07
1oed_B	250	Structure Of Acetylcholine Receptor Pore From Elect		1e-06
1oed_A	227	Structure Of Acetylcholine Receptor Pore From Elect		3e-06
2lly_A	137	Nmr Structures Of The Transmembrane Domains Of The		3e-05
1oed_E	260	Structure Of Acetylcholine Receptor Pore From Elect		1e-04

>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 3   GKKNEVQYECCPET-YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEK 61
           G K+ V Y CCP+T Y+DIT+   ++R  LY+  N+I+PC+L S + +L F LP DSGEK
Sbjct: 183 GWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEK 242
Query: 62  LTLVINVLL 70
           +TL I+VLL
Sbjct: 243 MTLSISVLL 251

>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 3   GKKNEVQYECCPET-YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEK 61
           G K+ V Y CCP+T Y+DIT+   ++R  LY+  N+I+PC+L S + +L F LP DSGEK
Sbjct: 207 GWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEK 266
Query: 62  LTLVINVLL 70
           +TL I+VLL
Sbjct: 267 MTLSISVLL 275

>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 2   PGKKNEVQYECCPE--TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 59
           P KKN +  +  P    Y D+TF + IRR+ L+Y  N I PCVLIS +A L F LP +SG
Sbjct: 181 PAKKN-IYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESG 239
Query: 60  EKLTLVINVLL 70
           EK++  I VLL
Sbjct: 240 EKMSTAICVLL 250

>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 2   PGKKNEVQYECCPE--TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 59
           P KKN +  +  P    Y D+TF + IRR+ L+Y  N I PCVLIS +A L F LP +SG
Sbjct: 217 PAKKN-IYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESG 275
Query: 60  EKLTLVINVLL 70
           EK++  I VLL
Sbjct: 276 EKMSTAICVLL 286

>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 2   PGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEK 61
           P +KN   +     +Y D+TF + I+R+ L+Y    IVPC+LIS +A+L F LPPD+GEK
Sbjct: 216 PSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEK 272
Query: 62  LTLVIN 67
           ++L I+
Sbjct: 273 MSLSIS 278

>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 2   PGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEK 61
           P +KN   +     +Y D+TF + I+R+ L+Y    IVPC+LIS +A+L F LPPD+GEK
Sbjct: 183 PSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEK 239
Query: 62  LTLVIN 67
           ++L I+
Sbjct: 240 MSLSIS 245

>pdb|2KSR|A Chain A, Nmr Structures Of Tm Domain Of The N-Acetylcholine Receptor B2 Subunit Length = 164

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 19 DITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINV 68
          ++ F    RR+ L+Y  NLI+PCVLI+S+A+L F LP D GEK+TL I+V
Sbjct: 17 NLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISV 66

>pdb|2LM2|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Achr B2 Subunit Length = 137

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 27 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINV 68
              L+Y  NLI+PCVLI+S+A+L F LP D GEK+TL I+V
Sbjct: 4  EEEPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISV 45

>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 2   PGKKN-EVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-G 59
           P KKN   Q       + +I F + I+R+ L+Y  N+I PCVLISS+ +L + LP  + G
Sbjct: 182 PAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGG 241
Query: 60  EKLTLVINVLL 70
           +K TL I+VLL
Sbjct: 242 QKCTLSISVLL 252

>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 2   PGKKN-EVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-G 59
           P KKN   Q       + +I F + I+R+ L+Y  N+I PCVLISS+ +L + LP  + G
Sbjct: 189 PAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGG 248
Query: 60  EKLTLVINVLL 70
           +K TL I+VLL
Sbjct: 249 QKCTLSISVLL 259

>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          L+Y  N I PCVLIS +A L F LP +SGEK++  I+VLL
Sbjct: 2  LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLL 41

>pdb|2K58|B Chain B, Nmr Structures Of The First Transmembrane Domain Of The Neuronal Acetylcholine Receptor Beta 2 Subunit Length = 35

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 27 RRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEK 61
          RR+ L+Y  NLI+PCVLI+S+A+L F LP D GEK
Sbjct: 1  RRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEK 35

>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          L+Y    I+PC+LIS +A+L F LPPD+GEK++L I+ LL
Sbjct: 2  LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALL 41

>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 227

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          LY+  N+I+PC+L S +  L F LP DSGEK+TL I+VLL
Sbjct: 2  LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLL 41

>pdb|2LLY|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Nachr A4 Subunit Length = 137

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINV 68
          L+Y  NLI+PC+LIS + +L F LP + GEK+TL I+V
Sbjct: 8  LFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISV 45

>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL 70
          L+Y  N+I PCVLISS+ +L + LP  + G+K TL I+VLL
Sbjct: 2  LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 42

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	4e-31
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	3e-28
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	4e-27
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	6e-27
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	1e-26
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	2e-26
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	2e-26
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	1e-25
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	4e-25
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	8e-24
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	3e-21
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	7e-19
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	5e-17
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	8e-17
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	4e-16
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	6e-16
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	9e-16
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	1e-15
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	1e-15
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	2e-14
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	3e-12
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	5e-12
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	3e-10
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	3e-10
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	8e-10

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score =  111 bits (278), Expect = 4e-31
 Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 1   MPGKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 59
             G K+ V Y CCP+  Y+DIT+   ++R  LY+  N+I+PC+L S + +L F LP DSG
Sbjct: 205 YRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG 264

Query: 60  EKLTLVINVLL 70
           EK+TL I+VLL
Sbjct: 265 EKMTLSISVLL 275

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score =  102 bits (256), Expect = 3e-28
 Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 1   MPGKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 59
             G K+ V Y CCP+  Y+DIT+   ++R  LY+  N+I+PC+L S + +L F LP DSG
Sbjct: 181 YRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG 240

Query: 60  EKLTLVINVLL 70
           EK+TL I+VLL
Sbjct: 241 EKMTLSISVLL 251

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 99.6 bits (248), Expect = 4e-27
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
            P +KN   +     +Y D+TF + I+R+ L+Y    IVPC+LIS +A+L F LPPD+GE
Sbjct: 182 KPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGE 238

Query: 61  KLTLVINVLL 70
           K++L I+ LL
Sbjct: 239 KMSLSISALL 248

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 98.8 bits (246), Expect = 6e-27
 Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 1   MPGKKNEVQYEC-CPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 59
            P KKN    +      Y D+TF + IRR+ L+Y  N I PCVLIS +A L F LP +SG
Sbjct: 180 KPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESG 239

Query: 60  EKLTLVINVLL 70
           EK++  I VLL
Sbjct: 240 EKMSTAICVLL 250

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score = 99.5 bits (247), Expect = 1e-26
 Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 1   MPGKKNEVQYEC-CPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 59
            P KKN    +      Y D+TF + IRR+ L+Y  N I PCVLIS +A L F LP +SG
Sbjct: 216 KPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESG 275

Query: 60  EKLTLVINVLL 70
           EK++  I VLL
Sbjct: 276 EKMSTAICVLL 286

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164

 Score = 93.8 bits (233), Expect = 2e-26
 Identities = 29/67 (43%), Positives = 40/67 (59%)

Query: 4  KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLT 63
            +            ++ F    RR+ L+Y  NLI+PCVLI+S+A+L F LP D GEK+T
Sbjct: 2  HHHHHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMT 61

Query: 64 LVINVLL 70
          L I+VLL
Sbjct: 62 LCISVLL 68

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 97.7 bits (243), Expect = 2e-26
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 1   MPGKKNEVQYECCPET-YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD-S 58
            P KKN        +  + +I F + I+R+ L+Y  N+I PCVLISS+ +L + LP    
Sbjct: 181 RPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAG 240

Query: 59  GEKLTLVINVLL 70
           G+K TL I+VLL
Sbjct: 241 GQKCTLSISVLL 252

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score = 96.4 bits (239), Expect = 1e-25
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
            P +KN   +     +Y D+TF + I+R+ L+Y    IVPC+LIS +A+L F LPPD+GE
Sbjct: 215 KPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGE 271

Query: 61  KLTLVINVLL 70
           K++L I+ LL
Sbjct: 272 KMSLSISALL 281

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 94.8 bits (235), Expect = 4e-25
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 1   MPGKKNEVQYECCPET-YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS- 58
            P KKN        +  + +I F + I+R+ L+Y  N+I PCVLISS+ +L + LP  + 
Sbjct: 188 RPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAG 247

Query: 59  GEKLTLVINVLL 70
           G+K TL I+VLL
Sbjct: 248 GQKCTLSISVLL 259

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 90.0 bits (224), Expect = 8e-24
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
                    +         + + ++I R+   Y  N+I+P + I  ++   F        
Sbjct: 169 FTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAF-WSTSYEA 227

Query: 61  KLTLVINVLL 70
            +TLV++ L+
Sbjct: 228 NVTLVVSTLI 237

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140

 Score = 79.2 bits (195), Expect = 3e-21
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 10 YECCP-ETYVDITFTIQIRRRT------LYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 62
            C      V+    I++ +        LY+  N+I PC   S +  L F LP DSGEK+
Sbjct: 22 KICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKM 81

Query: 63 TLVINVLL 70
          T   +VL 
Sbjct: 82 TESKSVLK 89

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137

 Score = 73.3 bits (180), Expect = 7e-19
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 26 IRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
               L+Y  NLI+PC+LIS + +L F LP + GEK+TL I+VLL
Sbjct: 3  AEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLL 47

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228

 Score = 70.6 bits (173), Expect = 5e-17
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFF--NLI 38
               +    Y CCPE Y+D+   ++ R R     F  NL 
Sbjct: 188 ATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNLF 227

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230

 Score = 69.9 bits (171), Expect = 8e-17
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFN--LIVPC 41
              ++ EV Y CC   YV++ + + +R       ++  L    
Sbjct: 185 NSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSRDLAHHH 227

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260

 Score = 68.4 bits (166), Expect = 4e-16
 Identities = 23/40 (57%), Positives = 29/40 (72%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          L+Y  N I PCVLIS +A L F LP +SGEK++  I+VLL
Sbjct: 2  LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLL 41

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score = 68.5 bits (168), Expect = 6e-16
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 4   KKNEVQYECC------PETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD 57
             ++++Y+           +  IT  I   R   YY ++ I+P  LI + +   F L   
Sbjct: 169 HISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESF 228

Query: 58  SGEKLTLVINVLL 70
           S E+L     ++L
Sbjct: 229 S-ERLQTSFTLML 240

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score = 68.3 bits (167), Expect = 9e-16
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 4   KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKL 62
                        Y  +  TIQ++R   +Y   L +P  ++  ++ + F     +   ++
Sbjct: 187 STTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARV 246

Query: 63  TLVINVLL 70
           TL +  LL
Sbjct: 247 TLGVTTLL 254

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250

 Score = 67.2 bits (163), Expect = 1e-15
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          L+Y    I+PC+LIS +A+L F LPPD+GEK++L I+ LL
Sbjct: 2  LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALL 41

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227

 Score = 67.1 bits (163), Expect = 1e-15
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          LY+  N+I+PC+L S +  L F LP DSGEK+TL I+VLL
Sbjct: 2  LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLL 41

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211

 Score = 63.4 bits (154), Expect = 2e-14
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYY 33
           +  KKN V Y CCPE Y D+  ++  R++    
Sbjct: 177 VTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSE 209

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260

 Score = 58.0 bits (139), Expect = 3e-12
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSG-EKLTLVINVLL 70
          L+Y  N+I PCVLISS+ +L + LP  +G +K TL I+VLL
Sbjct: 2  LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 42

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203

 Score = 56.7 bits (137), Expect = 5e-12
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRR 29
                N  +Y CC   Y DI  T   R++
Sbjct: 175 ATQSLNRKKYSCCENMYDDIEITFAFRKK 203

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212

 Score = 52.0 bits (125), Expect = 3e-10
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 1   MPGKKNEVQYECCP-ETYVDITFTIQIRRR 29
             G K+ V Y CCP   Y+DIT+   ++R 
Sbjct: 182 ARGWKHWVFYSCCPTTPYLDITYHFVMQRL 211

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRR 29
           +  K++E  YECC E Y D+TFT+  R++
Sbjct: 175 VTQKRSERFYECCKEPYPDVTFTVTFRKK 203

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score = 50.8 bits (122), Expect = 8e-10
 Identities = 2/35 (5%), Positives = 10/35 (28%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFF 35
                    +         + + ++I R+  ++  
Sbjct: 165 FTAVVKPANFALEDRLESKLDYQLRISRQGGHHHH 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	99.81
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	99.81
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.75
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.74
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.73
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.72
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.72
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.69
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	99.68
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.65
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.63
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.61
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	99.57
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	99.51
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	99.15
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	99.14
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	99.13
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	99.1
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	98.75
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	98.52
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	98.49
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	98.17
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	98.02
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	97.95
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	97.84
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	97.7
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	97.62

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=99.81  E-value=1.1e-23  Score=130.31  Aligned_cols=65  Identities=45%  Similarity=0.745  Sum_probs=42.5

Q ss_pred             eeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685           6 NEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus         6 ~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      |.....|||++|++++|++.+||+++||.+|+++||+++++++|++||+|+|+|||+++|+|++|
T Consensus         4 ~~~~~~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~LL   68 (164)
T 2ksr_A            4 HHHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLL   68 (164)
T ss_dssp             ---------------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCCCCeEEEeeehHH
Confidence            33456799999999999999999999999999999999999999999999999999999998764

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A

Probab=99.81  E-value=1.3e-25  Score=136.16  Aligned_cols=68  Identities=31%  Similarity=0.373  Sum_probs=62.9

Q ss_pred             ceeeeeecccCCCCe--------eeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685           3 GKKNEVQYECCPETY--------VDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus         3 ~~~~~~~y~~~~~~~--------~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      ..++.+.|+|||++|        +++++++.+||+++||.+|+++||+++++++|++||+|+|+|||++++++++|
T Consensus        14 ~~~~~~~y~cC~~~y~~~~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~lL   89 (140)
T 2lkg_A           14 HILKCVFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTESKSVLK   89 (140)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSSSHHHHHHHHHHH
T ss_pred             cEEEEEEecCCCCCccccCCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCCCCEEEEeeehHH
Confidence            456778899999977        89999999999999999999999999999999999999999999999998764

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.75  E-value=3.7e-21  Score=129.99  Aligned_cols=68  Identities=49%  Similarity=0.739  Sum_probs=63.3

Q ss_pred             ceeeeee-cccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685           3 GKKNEVQ-YECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus         3 ~~~~~~~-y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      .+++... |+||+++|+++++++.+||+++||++++++||+++++++|++||+|+++|||+++|+|+||
T Consensus       182 ~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~~~Rv~lgit~lL  250 (369)
T 2bg9_C          182 AKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLL  250 (369)
T ss_dssp             EEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCCCCCeEEEEhHHHH
Confidence            3566666 9999999999999999999999999999999999999999999999999999999998875

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.74  E-value=5.1e-21  Score=129.28  Aligned_cols=68  Identities=51%  Similarity=0.965  Sum_probs=63.1

Q ss_pred             ceeeeeecccCC-CCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685           3 GKKNEVQYECCP-ETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      ..++...|+||+ ++|+++++++.+||+++||++++++||+++++++|++||+|+++|||+++|+|+||
T Consensus       183 ~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~~~Rv~lgit~lL  251 (370)
T 2bg9_A          183 GWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLL  251 (370)
T ss_dssp             EEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCCCCeEEEeHHHHH
Confidence            356677899999 58999999999999999999999999999999999999999999999999998865

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.73  E-value=8.2e-21  Score=131.75  Aligned_cols=68  Identities=51%  Similarity=0.979  Sum_probs=63.9

Q ss_pred             ceeeeeecccCCC-CeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685           3 GKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      ..++...|+||++ +|+++++++.+||+++||++++++||+++++++|++||+|+++|||+++++|+||
T Consensus       207 ~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~eRv~LgiT~LL  275 (461)
T 4aq5_A          207 GWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLL  275 (461)
T ss_dssp             EEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTHHHHHHH
T ss_pred             eEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccccceeehhHHHHH
Confidence            3567778999999 9999999999999999999999999999999999999999999999999998875

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.72  E-value=8.8e-21  Score=128.10  Aligned_cols=68  Identities=43%  Similarity=0.685  Sum_probs=62.5

Q ss_pred             ceeeeee-cccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCC-CCceEEEEEeEeC
Q psy8685           3 GKKNEVQ-YECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVINVLL   70 (70)
Q Consensus         3 ~~~~~~~-y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~-sger~~l~it~lL   70 (70)
                      .+++... |+||+++|+++++++.+||+++||++++++||+++++++|++||+|++ +|||+++|+|+||
T Consensus       183 ~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lL  252 (370)
T 2bg9_E          183 AKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL  252 (370)
T ss_dssp             CCEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             eEEEEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHH
Confidence            3455555 899999999999999999999999999999999999999999999999 6999999998775

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.72  E-value=3e-20  Score=125.62  Aligned_cols=61  Identities=48%  Similarity=0.888  Sum_probs=59.1

Q ss_pred             cccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685          10 YECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus        10 y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      |+||+++|+++++++.+||+++||++++++||+++++++|++||+|+++|||+++|+|+||
T Consensus       188 y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~~~~Rv~lgit~lL  248 (370)
T 2bg9_B          188 WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALL  248 (370)
T ss_dssp             CCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHH
T ss_pred             ecCCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCCCCceEEEEehHHH
Confidence            8999999999999999999999999999999999999999999999999999999998875

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.69  E-value=6.2e-20  Score=121.72  Aligned_cols=65  Identities=23%  Similarity=0.346  Sum_probs=60.6

Q ss_pred             eeeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685           5 KNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus         5 ~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      ++...|+||+++|+++++++.+||+++||++++++||+++++++|++||+| ++|||+++++|++|
T Consensus       176 ~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~~~~Rv~l~it~lL  240 (322)
T 3rqw_A          176 DHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-SFSERLQTSFTLML  240 (322)
T ss_dssp             TTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-SHHHHHHHHHHHHH
T ss_pred             ceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-CCCCcEEEEEehHH
Confidence            455678899999999999999999999999999999999999999999999 88999999998764

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=99.68  E-value=1.1e-19  Score=120.53  Aligned_cols=66  Identities=18%  Similarity=0.345  Sum_probs=61.3

Q ss_pred             eeeeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685           4 KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus         4 ~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      +++...|+||+++|+++++++.+||+++||++++++||+++++++|++|| |+++|||+++++|+||
T Consensus       172 ~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~~~~Rv~l~it~lL  237 (321)
T 3tlw_A          172 VVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STSYEANVTLVVSTLI  237 (321)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCCHHHHHHHHHHHHH
T ss_pred             EEeeEEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCCCCCcEEEEhhHHH
Confidence            45566789999999999999999999999999999999999999999999 8888999999998875

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.65  E-value=4.6e-19  Score=124.46  Aligned_cols=67  Identities=49%  Similarity=0.774  Sum_probs=59.0

Q ss_pred             eeeeeecccCCC-CeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685           4 KKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus         4 ~~~~~~y~~~~~-~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      +++...+.||++ .|++++|++.+||+++||++|+++||+++++++|++||+|+++|||+++++|+||
T Consensus       219 ~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d~~eRisLgIT~LL  286 (522)
T 4aq5_C          219 KKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLL  286 (522)
T ss_dssp             EEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHH
T ss_pred             EEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCCcCceEEehHHHHH
Confidence            344444455544 7999999999999999999999999999999999999999999999999999875

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.63  E-value=6e-19  Score=123.02  Aligned_cols=67  Identities=43%  Similarity=0.711  Sum_probs=58.8

Q ss_pred             eeeeeecccCCC-CeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCC-CCceEEEEEeEeC
Q psy8685           4 KKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVINVLL   70 (70)
Q Consensus         4 ~~~~~~y~~~~~-~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~-sger~~l~it~lL   70 (70)
                      +++...+.||++ .|+++++++.+||+++||++++++||+++++++|++||+|++ +|||+++++|+||
T Consensus       191 ~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LL  259 (488)
T 4aq5_E          191 KKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL  259 (488)
T ss_dssp             EEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHH
T ss_pred             EEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHH
Confidence            444444455554 699999999999999999999999999999999999999999 6999999999875

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.61  E-value=2.1e-18  Score=120.43  Aligned_cols=64  Identities=48%  Similarity=0.848  Sum_probs=57.7

Q ss_pred             eeeeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685           4 KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus         4 ~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      +++...|+|   .|+++++++.+||+++||++++++||+++++++|++||+|+++|||+++++|+||
T Consensus       218 ~~~~~~~~~---~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s~eRvsLgiT~LL  281 (493)
T 4aq5_B          218 RKNWRSDDP---SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALL  281 (493)
T ss_dssp             EECCCTTSS---SBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTCGGGGTHHHHHHH
T ss_pred             EEEeecCCC---CccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCCCceEEehHHHHH
Confidence            444444554   8999999999999999999999999999999999999999999999999999875

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=99.57  E-value=7.2e-18  Score=112.79  Aligned_cols=57  Identities=23%  Similarity=0.466  Sum_probs=54.4

Q ss_pred             CCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCC-CceEEEEEeEeC
Q psy8685          14 PETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL   70 (70)
Q Consensus        14 ~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~s-ger~~l~it~lL   70 (70)
                      .+.|+++++++.+||+++||++++++||+++++++|++||+|+++ |||+++|+|+||
T Consensus       197 ~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lL  254 (347)
T 3rhw_A          197 TGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLL  254 (347)
T ss_dssp             SCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHH
T ss_pred             ccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHH
Confidence            468999999999999999999999999999999999999999999 899999998875

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=99.51  E-value=1.2e-17  Score=100.73  Aligned_cols=46  Identities=50%  Similarity=0.907  Sum_probs=42.3

Q ss_pred             EEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685          25 QIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus        25 ~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      ++||+++||.+|+++||+++++++|++||+|+|+|||+++++|++|
T Consensus         2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s~eRv~lgit~lL   47 (137)
T 2lly_A            2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLL   47 (137)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHH
T ss_pred             ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCCCCeEEEEeeeHH
Confidence            4799999999999999999999999999999999999999998764

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=99.15  E-value=2.6e-14  Score=93.54  Aligned_cols=41  Identities=56%  Similarity=0.975  Sum_probs=38.7

Q ss_pred             cceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685          30 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus        30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      +.||++|+++||+++++++|++||+|+|+|||+++++|++|
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~gekv~l~it~lL   41 (260)
T 1oed_C            1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLL   41 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCeEeehHHHHH
Confidence            57999999999999999999999999999999999998875

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=99.14  E-value=2e-14  Score=92.53  Aligned_cols=41  Identities=56%  Similarity=0.947  Sum_probs=38.7

Q ss_pred             cceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685          30 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus        30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      |.||++|+++||+++++++|++||+|+|+|||+++++|++|
T Consensus         1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~sgerv~l~it~lL   41 (227)
T 1oed_A            1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLL   41 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             CeEEEehHHHHHHHHHHHHHHHheeCCCCCCeEeehHHHHH
Confidence            57999999999999999999999999999999999998864

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=99.13  E-value=2.6e-14  Score=93.10  Aligned_cols=41  Identities=54%  Similarity=1.020  Sum_probs=38.7

Q ss_pred             cceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685          30 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus        30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      +.||++|+++||+++++++|++||+|+|+|||+++++|++|
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~dsgerv~l~it~lL   41 (250)
T 1oed_B            1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALL   41 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHheeCCCCCCeEEehhhHHH
Confidence            57999999999999999999999999999999999998875

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=99.10  E-value=8.2e-14  Score=91.18  Aligned_cols=41  Identities=54%  Similarity=0.958  Sum_probs=38.5

Q ss_pred             cceEEEEEeehhHHHHHHhhheeecCCC-CCceEEEEEeEeC
Q psy8685          30 TLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVINVLL   70 (70)
Q Consensus        30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~-sger~~l~it~lL   70 (70)
                      ++||++|+++||+++++++|++||+|+| +|||+++++|++|
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lL   42 (260)
T 1oed_E            1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL   42 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHH
Confidence            5799999999999999999999999999 7999999998875

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=98.75  E-value=6.7e-09  Score=66.20  Aligned_cols=37  Identities=27%  Similarity=0.612  Sum_probs=25.7

Q ss_pred             ceeeeeecccCCCCeeeEEEEEEEeeecceEEEEEee
Q psy8685           3 GKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIV   39 (70)
Q Consensus         3 ~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~   39 (70)
                      ++++...|+||+++|++++|+|.+||+++||++++++
T Consensus       190 ~~~~~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil  226 (228)
T 2wn9_A          190 QTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL  226 (228)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred             EEEEEEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence            4677778999999999999999999999999999874

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=98.52  E-value=5.5e-08  Score=62.28  Aligned_cols=36  Identities=22%  Similarity=0.620  Sum_probs=25.6

Q ss_pred             CceeeeeecccCCCCeeeEEEEEEEeeecceEEEEE
Q psy8685           2 PGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNL   37 (70)
Q Consensus         2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~   37 (70)
                      .++|+...|+||+++|++++|++.+||+++||+.+-
T Consensus       186 ~~~~~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~~  221 (230)
T 4afh_A          186 SAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSR  221 (230)
T ss_dssp             EEEEEEECCTTCSSCEEEEEEEEEEECC--------
T ss_pred             EEEEEEEecCCCCCCccEEEEEEEEEEeechhhccc
Confidence            356788889999999999999999999999998764

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=98.49  E-value=9.2e-08  Score=60.12  Aligned_cols=33  Identities=36%  Similarity=0.813  Sum_probs=27.8

Q ss_pred             ceeeeeecccCCCCeeeEEEEEEEeeecceEEE
Q psy8685           3 GKKNEVQYECCPETYVDITFTIQIRRRTLYYFF   35 (70)
Q Consensus         3 ~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~   35 (70)
                      ++++...|+||+++|++++|+|.+||+++||++
T Consensus       179 ~~~~~~~y~~~~~~y~~l~~~~~l~R~~~yyil  211 (211)
T 1uw6_A          179 QKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL  211 (211)
T ss_dssp             EEEEEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred             EEEEEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence            457778899999999999999999999999974

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=98.17  E-value=6e-07  Score=56.64  Aligned_cols=27  Identities=30%  Similarity=0.832  Sum_probs=25.2

Q ss_pred             CceeeeeecccCCCCeeeEEEEEEEee
Q psy8685           2 PGKKNEVQYECCPETYVDITFTIQIRR   28 (70)
Q Consensus         2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R   28 (70)
                      +++|+...|+|||++|++++|++.+||
T Consensus       178 ~~~r~~~~Y~CC~~~y~dit~~i~lrR  204 (205)
T 4aoe_A          178 KQKVNKKTYPCCPQSFEDIELRVTFKK  204 (205)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCCCCcceEEEEEEEEE
Confidence            467899999999999999999999999

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=98.02  E-value=1.6e-06  Score=54.61  Aligned_cols=27  Identities=44%  Similarity=0.907  Sum_probs=24.7

Q ss_pred             CceeeeeecccCCCCeeeEEEEEEEee
Q psy8685           2 PGKKNEVQYECCPETYVDITFTIQIRR   28 (70)
Q Consensus         2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R   28 (70)
                      .++|+...|+|||++|++++|+|.+||
T Consensus       178 ~~~~~~~~Y~cc~~~Y~~it~~~~lrR  204 (205)
T 4aod_A          178 TQQVNRKQYPCCPETYEDTTLSFTFRK  204 (205)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEeCCCCCCcceEEEEEEEEC
Confidence            357899999999999999999999977

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=97.95  E-value=3.7e-06  Score=52.71  Aligned_cols=31  Identities=6%  Similarity=0.070  Sum_probs=17.5

Q ss_pred             ceeeeeecccCCCCeeeEEEEEEEeeecceE
Q psy8685           3 GKKNEVQYECCPETYVDITFTIQIRRRTLYY   33 (70)
Q Consensus         3 ~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y   33 (70)
                      ++|+...|+||+++|++++|++.+||+.+..
T Consensus       167 ~~~~~~~y~cc~~~y~~i~f~i~irR~~~~~  197 (201)
T 3igq_A          167 AVVKPANFALEDRLESKLDYQLRISRQGGHH  197 (201)
T ss_dssp             EEEEC--------CCCEEEEEEEEEEC----
T ss_pred             EEEEEEEeCCCCCccCeEEEEEEEEECCCCC
Confidence            5678888999999999999999999998764

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=97.84  E-value=1.1e-05  Score=50.39  Aligned_cols=28  Identities=46%  Similarity=0.966  Sum_probs=25.4

Q ss_pred             ceeeeeecccCCCCeeeEEEEEEEeeec
Q psy8685           3 GKKNEVQYECCPETYVDITFTIQIRRRT   30 (70)
Q Consensus         3 ~~~~~~~y~~~~~~~~~i~~~~~l~R~~   30 (70)
                      ++|+...|+||+++|++++|++.+|||.
T Consensus       177 ~~~~~~~y~~c~~~y~~i~~~~~lrRr~  204 (204)
T 3sq6_A          177 QKRSERFYECCKEPYPDVTFTVTFRKKG  204 (204)
T ss_dssp             EEEEEEECSSSSSEEEEEEEEEEEEECC
T ss_pred             EEEEEEeeCCCCCCcceEEEEEEEEECc
Confidence            5678889999999999999999999983

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=97.70  E-value=3.8e-05  Score=48.08  Aligned_cols=28  Identities=43%  Similarity=0.884  Sum_probs=25.1

Q ss_pred             ceeeeeecccCC-CCeeeEEEEEEEeeec
Q psy8685           3 GKKNEVQYECCP-ETYVDITFTIQIRRRT   30 (70)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~i~~~~~l~R~~   30 (70)
                      .+++...|+||+ ++|++++|+|.+||+|
T Consensus       184 ~~~~~~~y~~~~~~~y~~i~~~~~l~R~p  212 (212)
T 2qc1_B          184 GWKHWVFYSCCPTTPYLDITYHFVMQRLP  212 (212)
T ss_dssp             EEEEEEEETTCSSCCEEEEEEEEEEEECC
T ss_pred             EEEEEEecCCCCCCCeeEEEEEEEEEECc
Confidence            456778899999 8999999999999986

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=97.62  E-value=4.7e-05  Score=47.40  Aligned_cols=27  Identities=33%  Similarity=0.749  Sum_probs=24.5

Q ss_pred             ceeeeeecccCCCCeeeEEEEEEEeee
Q psy8685           3 GKKNEVQYECCPETYVDITFTIQIRRR   29 (70)
Q Consensus         3 ~~~~~~~y~~~~~~~~~i~~~~~l~R~   29 (70)
                      .+++...|+||+|+|++++|+|.+||+
T Consensus       177 ~~~~~~~y~~~~~~y~~l~~~~~l~R~  203 (203)
T 2bj0_A          177 QSLNRKKYSCCENMYDDIEITFAFRKK  203 (203)
T ss_dssp             EEEEEEECTTCSSEEEEEEEEEEEEEC
T ss_pred             EEEEEEecCCCCCCeeEEEEEEEEEEC
Confidence            467778899999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	3e-14
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	5e-14
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	2e-13
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	3e-12
d1uw6a_	208	b.96.1.1 (A:) Acetylcholine binding protein (ACHBP	4e-11

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 62.5 bits (151), Expect = 3e-14
 Identities = 23/40 (57%), Positives = 29/40 (72%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          L+Y  N I PCVLIS +A L F LP +SGEK++  I+VLL
Sbjct: 2  LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLL 41

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 61.7 bits (149), Expect = 5e-14
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          L+Y    I+PC+LIS +A+L F LPPD+GEK++L I+ LL
Sbjct: 2  LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALL 41

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 59.7 bits (144), Expect = 2e-13
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          LY+  N+I+PC+L S +  L F LP DSGEK+TL I+VLL
Sbjct: 2  LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLL 41

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 57.1 bits (137), Expect = 3e-12
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL 70
          L+Y  N+I PCVLISS+ +L + LP  + G+K TL I+VLL
Sbjct: 2  LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 42

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score = 53.6 bits (128), Expect = 4e-11
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRR 29
           +  KKN V Y CCPE Y D+  ++  R++
Sbjct: 177 VTQKKNSVTYSCCPEAYEDVEVSLNFRKK 205

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	99.31
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	99.28
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	99.27
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	99.25
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	98.23

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.31  E-value=8.1e-16  Score=97.23  Aligned_cols=41  Identities=54%  Similarity=0.963  Sum_probs=39.1

Q ss_pred             cceEEEEEeehhHHHHHHhhheeecCCCC-CceEEEEEeEeC
Q psy8685          30 TLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL   70 (70)
Q Consensus        30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~s-ger~~l~it~lL   70 (70)
                      |.||++|+++||+++++++|++||+|+|+ |||+++|||+||
T Consensus         1 PlyY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l~it~lL   42 (260)
T d1oede_           1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL   42 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             CcEEEEhHHHHHHHHHHHHHHheEecCCCCCCcEEeehhHHH
Confidence            68999999999999999999999999998 999999999875

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.28  E-value=1e-15  Score=96.44  Aligned_cols=41  Identities=56%  Similarity=0.975  Sum_probs=39.2

Q ss_pred             cceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685          30 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus        30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      |.||++|+++||+++++++|++||+|+|+|||+++++|+||
T Consensus         1 pl~y~~n~~~P~~~~~~l~~~~f~lp~~~~~r~~l~it~lL   41 (260)
T d1oedc_           1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLL   41 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CceEEEhHHHHHHHHHHHHHHHeeeCCCCCCcEEeeHHHHH
Confidence            68999999999999999999999999999999999999875

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.27  E-value=8.8e-16  Score=95.89  Aligned_cols=41  Identities=56%  Similarity=0.947  Sum_probs=39.2

Q ss_pred             cceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685          30 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus        30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      |.||++|+++||+++++++|++||+|+|+|||+++++|++|
T Consensus         1 plyy~~~li~P~~li~~ls~~~F~lp~~s~eRi~l~it~lL   41 (227)
T d1oeda_           1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLL   41 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             CcEEEehHHHHHHHHHHHHHHHheecCCCCccEEeeHHHHH
Confidence            68999999999999999999999999999999999999875

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.25  E-value=1.4e-15  Score=95.72  Aligned_cols=41  Identities=54%  Similarity=1.020  Sum_probs=39.2

Q ss_pred             cceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685          30 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL   70 (70)
Q Consensus        30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL   70 (70)
                      |.||++|+++||+++++++|++||+|+|+|||+++++|+||
T Consensus         1 pl~y~~~~~~P~~~i~~l~~~~f~~p~~~~er~~l~it~lL   41 (250)
T d1oedb_           1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALL   41 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             CcEEEEeHHHHHHHHHHHHHHHheecCCCCCcEEeeHHHHH
Confidence            68999999999999999999999999999999999999875

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=98.23  E-value=3.5e-07  Score=56.08  Aligned_cols=30  Identities=40%  Similarity=0.913  Sum_probs=27.3

Q ss_pred             CceeeeeecccCCCCeeeEEEEEEEeeecc
Q psy8685           2 PGKKNEVQYECCPETYVDITFTIQIRRRTL   31 (70)
Q Consensus         2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R~~~   31 (70)
                      .++|+...|+||+++|++++|++.+|||+.
T Consensus       178 ~~~~~~~~y~cc~~~y~~i~~~i~lrRr~~  207 (208)
T d1uw6a_         178 TQKKNSVTYSCCPEAYEDVEVSLNFRKKGR  207 (208)
T ss_dssp             EEEEEEEECTTCSSEEEEEEEEEEEEECCC
T ss_pred             EEEEEEEEeCCCCCCcceEEEEEEEEECCC
Confidence            357889999999999999999999999985